Query 010933
Match_columns 497
No_of_seqs 472 out of 2417
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dw8_B Serine/threonine-protei 100.0 6.8E-48 2.3E-52 376.3 39.8 435 10-497 8-444 (447)
2 1nr0_A Actin interacting prote 100.0 1.6E-46 5.4E-51 380.2 45.3 398 29-496 56-564 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 7.8E-44 2.7E-48 359.2 43.2 354 30-496 219-577 (577)
4 1nr0_A Actin interacting prote 100.0 7.5E-44 2.5E-48 360.6 41.5 383 30-496 16-519 (611)
5 2ymu_A WD-40 repeat protein; u 100.0 2.2E-43 7.4E-48 356.0 44.1 367 29-496 13-454 (577)
6 1vyh_C Platelet-activating fac 100.0 3.4E-43 1.1E-47 338.3 37.7 280 29-456 105-407 (410)
7 2ynn_A Coatomer subunit beta'; 100.0 8.9E-43 3E-47 321.6 37.8 284 30-456 11-298 (304)
8 3ow8_A WD repeat-containing pr 100.0 7.9E-43 2.7E-47 324.1 36.9 282 29-456 29-317 (321)
9 4g56_B MGC81050 protein; prote 100.0 9.8E-43 3.4E-47 328.4 34.2 291 28-456 38-339 (357)
10 1got_B GT-beta; complex (GTP-b 100.0 2.2E-41 7.5E-46 317.5 38.4 284 30-456 53-339 (340)
11 4gqb_B Methylosome protein 50; 100.0 1.2E-41 4E-46 318.5 34.5 299 27-457 25-328 (344)
12 2pbi_B Guanine nucleotide-bind 100.0 1.5E-40 5.1E-45 313.3 37.7 288 29-456 61-353 (354)
13 1vyh_C Platelet-activating fac 100.0 1.1E-40 3.9E-45 320.6 37.5 283 89-496 100-408 (410)
14 4ery_A WD repeat-containing pr 100.0 6.3E-40 2.1E-44 304.1 40.1 283 30-496 21-309 (312)
15 3ow8_A WD repeat-containing pr 100.0 2.2E-40 7.4E-45 307.6 35.8 286 90-496 25-318 (321)
16 3frx_A Guanine nucleotide-bind 100.0 8.8E-40 3E-44 303.6 39.3 291 30-496 15-314 (319)
17 3sfz_A APAF-1, apoptotic pepti 100.0 6.9E-40 2.3E-44 359.0 43.8 383 29-496 612-1155(1249)
18 2ynn_A Coatomer subunit beta'; 100.0 7.2E-40 2.5E-44 302.1 36.0 285 88-496 4-299 (304)
19 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.1E-40 1.7E-44 308.7 35.5 289 30-456 13-331 (345)
20 1erj_A Transcriptional repress 100.0 4.3E-40 1.5E-44 315.0 34.0 281 30-433 62-362 (393)
21 2oaj_A Protein SNI1; WD40 repe 100.0 5.6E-40 1.9E-44 344.0 37.9 386 29-496 14-658 (902)
22 3iz6_a 40S ribosomal protein R 100.0 2.7E-40 9.2E-45 314.9 31.2 301 29-457 63-372 (380)
23 1got_B GT-beta; complex (GTP-b 100.0 4.6E-39 1.6E-43 301.7 37.5 287 88-496 46-340 (340)
24 2pm9_A Protein WEB1, protein t 100.0 9.8E-41 3.4E-45 322.5 26.4 338 29-497 9-412 (416)
25 1r5m_A SIR4-interacting protei 100.0 2.5E-39 8.6E-44 313.3 35.5 328 28-496 41-422 (425)
26 3vl1_A 26S proteasome regulato 100.0 1.5E-39 5.1E-44 314.7 33.2 328 33-496 57-416 (420)
27 2hes_X YDR267CP; beta-propelle 100.0 5.2E-39 1.8E-43 299.9 34.7 293 30-457 12-325 (330)
28 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-38 6.3E-43 298.1 38.1 293 87-496 5-332 (345)
29 1pgu_A Actin interacting prote 100.0 4.9E-38 1.7E-42 319.3 44.1 385 29-496 15-611 (615)
30 2j04_B YDR362CP, TAU91; beta p 100.0 8.7E-40 3E-44 320.9 27.8 338 28-496 129-514 (524)
31 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-38 4.5E-43 348.9 39.9 381 30-496 655-1204(1249)
32 3mkq_A Coatomer beta'-subunit; 100.0 6.2E-38 2.1E-42 329.1 41.0 323 30-496 11-383 (814)
33 1gxr_A ESG1, transducin-like e 100.0 3.3E-38 1.1E-42 295.5 34.7 321 31-496 8-334 (337)
34 3iz6_a 40S ribosomal protein R 100.0 5.5E-39 1.9E-43 305.9 29.3 298 88-496 57-372 (380)
35 2pbi_B Guanine nucleotide-bind 100.0 6.7E-38 2.3E-42 295.2 36.2 290 88-496 55-354 (354)
36 2xzm_R RACK1; ribosome, transl 100.0 1.9E-37 6.3E-42 291.2 38.9 294 87-496 11-337 (343)
37 4aow_A Guanine nucleotide-bind 100.0 1E-37 3.5E-42 292.7 37.1 301 29-413 35-339 (340)
38 2xzm_R RACK1; ribosome, transl 100.0 2.4E-37 8.1E-42 290.5 38.8 288 30-456 19-336 (343)
39 4e54_B DNA damage-binding prot 100.0 2.4E-38 8.1E-43 307.3 30.4 295 30-496 117-427 (435)
40 4gqb_B Methylosome protein 50; 100.0 1.2E-37 4.2E-42 291.2 34.0 290 110-496 31-328 (344)
41 2hes_X YDR267CP; beta-propelle 100.0 4E-37 1.4E-41 287.2 33.7 290 88-496 5-325 (330)
42 2pm7_B Protein transport prote 100.0 3E-37 1E-41 283.6 31.1 256 30-411 7-285 (297)
43 3dm0_A Maltose-binding peripla 100.0 1.9E-36 6.4E-41 311.5 39.7 307 29-496 379-690 (694)
44 3ei3_B DNA damage-binding prot 100.0 7.4E-37 2.5E-41 292.0 33.4 301 29-497 70-380 (383)
45 3frx_A Guanine nucleotide-bind 100.0 2E-36 6.8E-41 281.0 32.7 249 30-412 63-318 (319)
46 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-36 7.4E-41 287.4 33.6 302 31-456 7-357 (372)
47 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-35 3.6E-40 289.8 37.9 305 30-496 116-439 (445)
48 1gxr_A ESG1, transducin-like e 100.0 1.6E-35 5.5E-40 277.3 37.6 281 29-456 48-333 (337)
49 2oaj_A Protein SNI1; WD40 repe 100.0 4E-36 1.4E-40 314.9 37.1 397 29-496 55-729 (902)
50 4g56_B MGC81050 protein; prote 100.0 3E-36 1E-40 284.1 31.1 251 29-414 91-346 (357)
51 3bg1_A Protein SEC13 homolog; 100.0 7.7E-37 2.6E-41 283.4 26.4 256 30-411 11-293 (316)
52 3zwl_B Eukaryotic translation 100.0 1.6E-35 5.5E-40 280.9 36.0 286 29-456 29-342 (369)
53 3gre_A Serine/threonine-protei 100.0 1.4E-35 4.7E-40 288.4 35.2 343 30-496 61-437 (437)
54 3dwl_C Actin-related protein 2 100.0 7.6E-37 2.6E-41 291.2 25.7 262 31-411 10-281 (377)
55 3v7d_B Cell division control p 100.0 4.6E-35 1.6E-39 287.0 38.7 315 30-495 119-458 (464)
56 1erj_A Transcriptional repress 100.0 8.3E-36 2.8E-40 285.3 32.1 257 33-411 124-389 (393)
57 2pm9_A Protein WEB1, protein t 100.0 6.1E-36 2.1E-40 288.8 31.0 318 13-456 49-410 (416)
58 1sq9_A Antiviral protein SKI8; 100.0 2.2E-35 7.5E-40 283.2 33.3 300 30-456 14-391 (397)
59 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-34 4.4E-39 268.2 37.1 273 30-456 16-292 (313)
60 4aow_A Guanine nucleotide-bind 100.0 1.8E-34 6E-39 270.7 37.7 288 88-496 29-334 (340)
61 3zwl_B Eukaryotic translation 100.0 3.1E-34 1.1E-38 272.0 38.8 293 89-496 24-343 (369)
62 3jrp_A Fusion protein of prote 100.0 2.9E-35 1E-39 280.2 30.4 257 30-413 9-289 (379)
63 4a11_B DNA excision repair pro 100.0 1.9E-34 6.5E-39 277.5 36.3 348 30-496 41-402 (408)
64 3k26_A Polycomb protein EED; W 100.0 1.4E-34 4.7E-39 274.2 34.3 306 30-456 16-362 (366)
65 3i2n_A WD repeat-containing pr 100.0 5E-35 1.7E-39 276.3 30.9 286 30-456 16-349 (357)
66 4h5i_A Guanine nucleotide-exch 100.0 4.1E-35 1.4E-39 277.1 29.7 295 33-458 15-341 (365)
67 1r5m_A SIR4-interacting protei 100.0 1.1E-34 3.7E-39 280.7 31.9 292 31-457 107-422 (425)
68 1pgu_A Actin interacting prote 100.0 4.6E-34 1.6E-38 290.0 37.9 343 30-456 61-610 (615)
69 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-34 7.4E-39 302.2 36.0 365 30-496 53-457 (814)
70 4gga_A P55CDC, cell division c 100.0 9.9E-34 3.4E-38 273.5 37.1 278 34-457 107-392 (420)
71 2j04_A TAU60, YPL007P, hypothe 100.0 4.7E-35 1.6E-39 279.9 27.2 320 32-488 15-349 (588)
72 1yfq_A Cell cycle arrest prote 100.0 2.1E-34 7.2E-39 270.4 30.5 285 30-453 9-315 (342)
73 4aez_A CDC20, WD repeat-contai 100.0 3.8E-34 1.3E-38 274.7 32.2 271 35-456 96-376 (401)
74 3vl1_A 26S proteasome regulato 100.0 7E-34 2.4E-38 274.8 32.7 285 33-456 98-415 (420)
75 1k8k_C P40, ARP2/3 complex 41 100.0 1.7E-33 5.9E-38 267.4 34.8 282 110-496 9-358 (372)
76 4ery_A WD repeat-containing pr 100.0 2.9E-33 9.8E-38 259.2 35.2 245 30-410 63-311 (312)
77 3f3f_A Nucleoporin SEH1; struc 100.0 8E-34 2.7E-38 266.8 31.6 271 30-415 9-341 (351)
78 3k26_A Polycomb protein EED; W 100.0 6.6E-34 2.3E-38 269.5 30.8 285 110-497 19-364 (366)
79 1sq9_A Antiviral protein SKI8; 100.0 1.3E-33 4.4E-38 270.8 32.0 299 88-496 7-392 (397)
80 3dm0_A Maltose-binding peripla 100.0 1.4E-33 4.7E-38 290.2 32.9 259 29-410 427-692 (694)
81 4aez_A CDC20, WD repeat-contai 100.0 4.4E-33 1.5E-37 267.4 32.9 254 30-424 132-393 (401)
82 4ggc_A P55CDC, cell division c 100.0 2.2E-32 7.4E-37 253.9 36.5 278 34-457 27-312 (318)
83 2pm7_B Protein transport prote 100.0 7E-33 2.4E-37 254.4 32.5 247 91-456 3-281 (297)
84 3mmy_A MRNA export factor; mRN 100.0 6.3E-33 2.1E-37 262.9 31.8 292 30-456 37-342 (368)
85 3i2n_A WD repeat-containing pr 100.0 4.5E-33 1.6E-37 262.9 29.4 280 110-496 19-350 (357)
86 3jro_A Fusion protein of prote 100.0 4.9E-34 1.7E-38 295.1 24.4 257 30-413 7-287 (753)
87 3bg1_A Protein SEC13 homolog; 100.0 3.5E-33 1.2E-37 258.7 27.3 242 110-456 14-289 (316)
88 3v7d_B Cell division control p 100.0 4.5E-32 1.5E-36 265.7 36.3 297 30-456 160-459 (464)
89 4gga_A P55CDC, cell division c 100.0 1.4E-32 4.6E-37 265.6 32.1 248 30-414 145-398 (420)
90 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-32 5.6E-37 266.3 32.8 270 30-457 131-411 (435)
91 2j04_B YDR362CP, TAU91; beta p 100.0 2.6E-33 9E-38 274.9 23.3 297 30-459 205-516 (524)
92 2aq5_A Coronin-1A; WD40 repeat 100.0 6.5E-32 2.2E-36 259.4 31.5 286 34-456 36-338 (402)
93 4a11_B DNA excision repair pro 100.0 3.9E-32 1.3E-36 261.3 29.4 312 90-496 36-362 (408)
94 3f3f_A Nucleoporin SEH1; struc 100.0 1.3E-31 4.6E-36 251.6 31.5 299 91-496 5-334 (351)
95 4h5i_A Guanine nucleotide-exch 100.0 2.4E-32 8.1E-37 258.1 26.0 290 110-496 15-340 (365)
96 1yfq_A Cell cycle arrest prote 100.0 1.3E-31 4.6E-36 251.3 30.5 268 110-492 12-315 (342)
97 3gre_A Serine/threonine-protei 100.0 1.1E-32 3.9E-37 267.8 21.9 302 39-496 34-356 (437)
98 4gq1_A NUP37; propeller, trans 100.0 1.3E-31 4.4E-36 256.0 28.1 261 121-496 99-386 (393)
99 3dwl_C Actin-related protein 2 100.0 4.4E-32 1.5E-36 258.3 24.4 210 29-352 52-280 (377)
100 3ei3_B DNA damage-binding prot 100.0 2E-31 6.7E-36 254.3 28.8 254 30-411 116-382 (383)
101 3jrp_A Fusion protein of prote 100.0 8.6E-31 2.9E-35 249.3 32.5 213 89-413 3-242 (379)
102 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-30 4E-35 254.4 34.0 238 110-433 103-364 (450)
103 3lrv_A PRE-mRNA-splicing facto 100.0 4.7E-31 1.6E-35 247.6 29.5 261 38-433 42-309 (343)
104 2xyi_A Probable histone-bindin 100.0 4.4E-31 1.5E-35 255.6 29.5 266 28-412 124-411 (430)
105 3mmy_A MRNA export factor; mRN 100.0 2.6E-30 8.9E-35 244.8 34.3 279 88-490 30-336 (368)
106 4e54_B DNA damage-binding prot 100.0 5E-32 1.7E-36 262.8 22.3 256 28-414 160-433 (435)
107 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.9E-30 2.4E-34 248.7 35.9 264 30-453 157-430 (445)
108 4ggc_A P55CDC, cell division c 100.0 3.4E-30 1.2E-34 239.1 31.0 246 30-412 65-316 (318)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-30 6.8E-35 249.0 29.4 255 29-414 78-345 (402)
110 3odt_A Protein DOA1; ubiquitin 100.0 8.3E-30 2.8E-34 235.8 31.7 242 30-415 57-300 (313)
111 3vu4_A KMHSV2; beta-propeller 100.0 7.2E-30 2.5E-34 240.4 30.5 249 30-413 17-273 (355)
112 1p22_A F-BOX/WD-repeat protein 100.0 1.7E-29 5.8E-34 245.1 32.2 263 110-496 134-411 (435)
113 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-31 4E-36 256.6 16.4 288 110-496 16-318 (588)
114 2xyi_A Probable histone-bindin 100.0 1.3E-29 4.4E-34 245.3 30.2 263 105-456 124-406 (430)
115 3dw8_B Serine/threonine-protei 100.0 1.2E-29 4E-34 247.3 26.8 247 110-424 29-328 (447)
116 3jro_A Fusion protein of prote 100.0 4.5E-29 1.5E-33 258.0 29.2 250 91-457 3-282 (753)
117 3bws_A Protein LP49; two-domai 100.0 3.3E-28 1.1E-32 236.0 32.7 280 31-496 121-429 (433)
118 4gq1_A NUP37; propeller, trans 100.0 3.1E-29 1.1E-33 239.5 21.6 265 31-409 88-387 (393)
119 2w18_A PALB2, fancn, partner a 100.0 1.2E-27 4.2E-32 215.0 29.3 272 34-409 41-355 (356)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-27 4.2E-32 233.0 30.2 259 30-412 100-392 (450)
121 1l0q_A Surface layer protein; 100.0 1.7E-26 5.7E-31 220.8 34.3 251 30-426 29-289 (391)
122 3lrv_A PRE-mRNA-splicing facto 100.0 6E-28 2.1E-32 226.4 22.8 262 121-494 46-328 (343)
123 2ecf_A Dipeptidyl peptidase IV 100.0 2.1E-26 7.1E-31 238.9 35.0 326 32-488 36-443 (741)
124 1l0q_A Surface layer protein; 100.0 3.2E-26 1.1E-30 218.9 32.4 259 45-456 3-271 (391)
125 1nir_A Nitrite reductase; hemo 100.0 1.4E-25 4.9E-30 221.9 33.7 320 39-496 144-511 (543)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.1E-26 3.8E-31 223.1 24.1 302 32-483 62-411 (415)
127 3bws_A Protein LP49; two-domai 99.9 1.6E-25 5.4E-30 217.1 29.5 239 30-411 167-432 (433)
128 1k32_A Tricorn protease; prote 99.9 1E-24 3.5E-29 233.9 32.9 365 28-489 48-491 (1045)
129 3vu4_A KMHSV2; beta-propeller 99.9 2.2E-24 7.7E-29 202.8 30.1 270 90-496 12-333 (355)
130 1xfd_A DIP, dipeptidyl aminope 99.9 6.3E-25 2.2E-29 227.2 27.1 322 34-488 18-428 (723)
131 2w18_A PALB2, fancn, partner a 99.9 1E-24 3.5E-29 196.1 24.5 194 212-456 134-353 (356)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-23 4.3E-28 201.8 32.3 243 44-434 143-408 (415)
133 2z3z_A Dipeptidyl aminopeptida 99.9 2.1E-23 7.1E-28 215.1 30.4 334 34-496 27-432 (706)
134 1k32_A Tricorn protease; prote 99.9 5.8E-23 2E-27 220.3 33.8 363 30-496 201-634 (1045)
135 2ojh_A Uncharacterized protein 99.9 7.2E-23 2.5E-27 187.3 22.8 226 49-414 17-261 (297)
136 3u4y_A Uncharacterized protein 99.9 2.1E-21 7.2E-26 180.9 31.9 238 38-414 3-255 (331)
137 1nir_A Nitrite reductase; hemo 99.9 9.6E-22 3.3E-26 194.5 31.0 278 34-439 180-492 (543)
138 3vgz_A Uncharacterized protein 99.9 2.8E-21 9.6E-26 181.7 31.9 254 31-414 39-306 (353)
139 1ri6_A Putative isomerase YBHE 99.9 3.6E-21 1.2E-25 180.1 29.2 279 29-433 34-332 (343)
140 2ecf_A Dipeptidyl peptidase IV 99.9 2.5E-21 8.5E-26 200.8 29.7 309 110-496 37-410 (741)
141 1z68_A Fibroblast activation p 99.9 1.3E-21 4.3E-26 202.2 25.7 318 37-488 20-428 (719)
142 3hfq_A Uncharacterized protein 99.9 5E-21 1.7E-25 179.7 27.3 266 30-410 37-316 (347)
143 2ojh_A Uncharacterized protein 99.9 4.7E-21 1.6E-25 175.1 25.7 234 28-402 37-293 (297)
144 3u4y_A Uncharacterized protein 99.9 3.8E-20 1.3E-24 172.3 29.6 253 32-412 40-305 (331)
145 1ri6_A Putative isomerase YBHE 99.9 1.9E-20 6.5E-25 175.1 27.6 275 110-482 38-335 (343)
146 1xfd_A DIP, dipeptidyl aminope 99.9 5.7E-21 1.9E-25 197.5 25.5 289 110-496 17-390 (723)
147 2z3z_A Dipeptidyl aminopeptida 99.9 9.4E-21 3.2E-25 195.3 27.1 280 33-439 82-414 (706)
148 3o4h_A Acylamino-acid-releasin 99.9 1.3E-20 4.3E-25 189.7 25.2 271 32-456 21-309 (582)
149 4a5s_A Dipeptidyl peptidase 4 99.9 1.7E-19 5.8E-24 186.4 32.7 324 34-490 18-436 (740)
150 2oit_A Nucleoporin 214KDA; NH2 99.9 2E-19 6.9E-24 173.1 29.6 282 32-411 36-333 (434)
151 3o4h_A Acylamino-acid-releasin 99.9 4.6E-20 1.6E-24 185.6 25.2 257 110-490 22-302 (582)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 3.7E-19 1.3E-23 171.2 30.2 229 29-352 89-332 (434)
153 3hfq_A Uncharacterized protein 99.9 4.6E-19 1.6E-23 166.2 28.6 216 110-411 40-271 (347)
154 3scy_A Hypothetical bacterial 99.9 9.6E-19 3.3E-23 165.0 30.9 263 31-410 48-336 (361)
155 1pby_B Quinohemoprotein amine 99.9 1.5E-19 5E-24 168.6 24.0 232 216-496 35-307 (337)
156 1jmx_B Amine dehydrogenase; ox 99.8 1E-19 3.6E-24 170.6 22.2 256 37-415 4-329 (349)
157 1pby_B Quinohemoprotein amine 99.8 6.8E-19 2.3E-23 164.1 26.6 250 45-422 2-320 (337)
158 3vgz_A Uncharacterized protein 99.8 2.3E-18 7.8E-23 161.7 29.2 240 32-402 88-335 (353)
159 3pe7_A Oligogalacturonate lyas 99.8 5E-19 1.7E-23 168.7 22.7 238 38-412 41-330 (388)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.2E-18 7.6E-23 162.6 25.5 258 33-412 40-342 (365)
161 3scy_A Hypothetical bacterial 99.8 3.4E-17 1.2E-21 154.3 31.5 272 110-478 50-360 (361)
162 1z68_A Fibroblast activation p 99.8 5.4E-18 1.8E-22 175.0 21.3 271 113-489 19-375 (719)
163 3azo_A Aminopeptidase; POP fam 99.8 2.4E-17 8.1E-22 168.6 25.0 297 30-456 21-363 (662)
164 1q7f_A NHL, brain tumor CG1071 99.8 6.5E-16 2.2E-20 140.4 31.8 261 12-412 11-281 (286)
165 4a5s_A Dipeptidyl peptidase 4 99.8 2.2E-16 7.5E-21 163.1 30.1 278 110-489 17-382 (740)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.1E-16 7.1E-21 149.1 26.9 237 110-433 40-316 (365)
167 1jmx_B Amine dehydrogenase; ox 99.8 1.8E-16 6.1E-21 148.5 25.5 288 120-496 8-322 (349)
168 3c5m_A Oligogalacturonate lyas 99.7 2.1E-16 7.2E-21 150.8 21.4 291 34-410 37-381 (396)
169 3fvz_A Peptidyl-glycine alpha- 99.7 1.8E-15 6.2E-20 140.3 26.5 258 33-411 24-322 (329)
170 3pe7_A Oligogalacturonate lyas 99.7 5.7E-16 1.9E-20 147.4 21.9 276 32-410 80-381 (388)
171 2oiz_A Aromatic amine dehydrog 99.7 1.5E-14 5E-19 135.8 29.6 302 43-482 14-360 (361)
172 2oiz_A Aromatic amine dehydrog 99.7 5.8E-15 2E-19 138.5 26.8 275 37-433 54-357 (361)
173 2dg1_A DRP35, lactonase; beta 99.7 3.9E-15 1.3E-19 138.5 24.6 244 33-410 6-262 (333)
174 3azo_A Aminopeptidase; POP fam 99.7 4.3E-15 1.5E-19 151.8 26.1 210 223-485 87-350 (662)
175 1q7f_A NHL, brain tumor CG1071 99.7 8.2E-14 2.8E-18 126.5 29.2 203 110-410 30-237 (286)
176 3e5z_A Putative gluconolactona 99.7 3.3E-14 1.1E-18 129.8 25.4 241 31-412 26-287 (296)
177 2xdw_A Prolyl endopeptidase; a 99.6 3.6E-14 1.2E-18 146.0 26.6 250 31-413 123-416 (710)
178 3c5m_A Oligogalacturonate lyas 99.6 3.1E-15 1.1E-19 142.6 17.0 219 219-489 85-370 (396)
179 2bkl_A Prolyl endopeptidase; m 99.6 1.6E-14 5.6E-19 148.1 22.1 248 31-413 119-399 (695)
180 2gop_A Trilobed protease; beta 99.6 1.8E-13 6.3E-18 127.9 27.0 256 29-456 11-327 (347)
181 3fvz_A Peptidyl-glycine alpha- 99.6 1.9E-13 6.4E-18 126.7 26.4 244 110-414 24-280 (329)
182 1qks_A Cytochrome CD1 nitrite 99.6 2.7E-12 9.2E-17 126.6 35.3 318 41-496 164-535 (567)
183 1rwi_B Serine/threonine-protei 99.6 1.9E-13 6.5E-18 122.8 24.4 239 34-413 25-266 (270)
184 2z2n_A Virginiamycin B lyase; 99.6 8.6E-12 3E-16 113.7 35.8 239 31-409 13-253 (299)
185 2dg1_A DRP35, lactonase; beta 99.6 1.1E-12 3.8E-17 121.8 29.6 245 31-402 43-301 (333)
186 2xdw_A Prolyl endopeptidase; a 99.6 2.4E-13 8.3E-18 139.7 27.5 239 212-496 122-411 (710)
187 2gop_A Trilobed protease; beta 99.6 2.5E-13 8.7E-18 126.9 23.4 248 33-410 59-330 (347)
188 3no2_A Uncharacterized protein 99.6 1.6E-12 5.4E-17 116.8 26.1 245 43-419 4-259 (276)
189 3e5z_A Putative gluconolactona 99.6 1.8E-12 6.2E-17 118.2 26.5 235 212-496 25-283 (296)
190 2bkl_A Prolyl endopeptidase; m 99.5 6.5E-13 2.2E-17 136.2 23.6 238 211-496 117-394 (695)
191 3dsm_A Uncharacterized protein 99.5 8.4E-12 2.9E-16 115.4 27.4 160 215-414 84-256 (328)
192 1yr2_A Prolyl oligopeptidase; 99.5 2E-12 6.7E-17 133.5 24.1 245 33-413 163-443 (741)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-11 4.5E-16 113.4 27.3 247 33-412 18-300 (314)
194 1qks_A Cytochrome CD1 nitrite 99.5 7.7E-11 2.6E-15 116.2 33.4 318 32-420 196-546 (567)
195 2qc5_A Streptogramin B lactona 99.5 2.6E-10 9E-15 103.8 34.4 237 32-409 19-258 (300)
196 3no2_A Uncharacterized protein 99.5 2.3E-11 7.8E-16 109.2 25.8 198 122-421 4-204 (276)
197 1rwi_B Serine/threonine-protei 99.5 5.4E-11 1.8E-15 106.7 27.5 197 111-412 25-223 (270)
198 3dsm_A Uncharacterized protein 99.5 2.1E-11 7.2E-16 112.7 25.1 248 33-421 44-310 (328)
199 1yr2_A Prolyl oligopeptidase; 99.4 1.2E-11 4.1E-16 127.7 23.2 236 212-496 160-438 (741)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.3E-10 4.5E-15 106.7 27.0 206 110-414 18-259 (314)
201 2mad_H Methylamine dehydrogena 99.4 6.8E-10 2.3E-14 104.1 31.0 256 37-415 70-354 (373)
202 3g4e_A Regucalcin; six bladed 99.4 1.7E-10 5.8E-15 105.0 26.0 232 34-400 14-261 (297)
203 2z2n_A Virginiamycin B lyase; 99.4 1.2E-09 4.2E-14 99.3 30.9 239 32-412 56-296 (299)
204 3iuj_A Prolyl endopeptidase; h 99.4 7.3E-11 2.5E-15 120.7 24.4 246 31-413 127-407 (693)
205 3sjl_D Methylamine dehydrogena 99.4 4.8E-10 1.6E-14 103.8 27.1 267 37-434 37-341 (386)
206 3dr2_A Exported gluconolactona 99.4 2.6E-10 8.8E-15 104.3 24.8 233 31-404 43-300 (305)
207 3hrp_A Uncharacterized protein 99.3 1.4E-09 4.7E-14 103.5 29.1 270 33-410 131-409 (409)
208 2mad_H Methylamine dehydrogena 99.3 5.6E-09 1.9E-13 97.8 31.6 254 39-415 27-311 (373)
209 1xip_A Nucleoporin NUP159; bet 99.3 4E-11 1.4E-15 111.4 16.2 189 33-340 38-230 (388)
210 3sjl_D Methylamine dehydrogena 99.3 1.9E-09 6.5E-14 99.7 27.0 139 269-433 231-383 (386)
211 3g4e_A Regucalcin; six bladed 99.3 2.7E-09 9.2E-14 97.0 26.3 180 214-432 53-249 (297)
212 2ghs_A AGR_C_1268P; regucalcin 99.3 3.7E-09 1.3E-13 97.5 27.2 228 34-400 50-291 (326)
213 1xip_A Nucleoporin NUP159; bet 99.3 2.9E-10 9.8E-15 105.7 18.1 193 110-399 38-232 (388)
214 3dr2_A Exported gluconolactona 99.3 2.9E-09 1E-13 97.2 24.8 233 213-496 43-303 (305)
215 2qc5_A Streptogramin B lactona 99.2 2.1E-08 7.2E-13 91.0 30.3 237 32-410 61-299 (300)
216 2qe8_A Uncharacterized protein 99.2 1.2E-09 4.1E-14 101.6 22.2 275 33-456 17-317 (343)
217 3c75_H MADH, methylamine dehyd 99.2 6.6E-09 2.3E-13 97.9 27.3 297 42-419 82-409 (426)
218 2ghs_A AGR_C_1268P; regucalcin 99.2 6.6E-09 2.3E-13 95.8 26.1 158 215-410 90-259 (326)
219 2ece_A 462AA long hypothetical 99.1 6.9E-08 2.4E-12 90.0 27.2 172 218-399 191-399 (462)
220 3hrp_A Uncharacterized protein 99.1 5E-08 1.7E-12 92.7 26.3 236 215-495 131-406 (409)
221 2qe8_A Uncharacterized protein 99.1 2E-08 6.9E-13 93.3 22.6 222 212-488 64-309 (343)
222 1mda_H Methylamine dehydrogena 99.0 2.7E-08 9.3E-13 92.2 21.3 79 328-424 268-358 (368)
223 3iuj_A Prolyl endopeptidase; h 99.0 2.2E-08 7.7E-13 102.3 21.4 238 211-496 125-402 (693)
224 3c75_H MADH, methylamine dehyd 99.0 3.8E-07 1.3E-11 86.0 25.8 231 219-496 122-399 (426)
225 3q7m_A Lipoprotein YFGL, BAMB; 98.9 1.1E-06 3.8E-11 82.6 28.2 153 227-415 144-300 (376)
226 1npe_A Nidogen, entactin; glyc 98.9 4.1E-06 1.4E-10 74.5 29.8 174 215-434 79-261 (267)
227 1kb0_A Quinohemoprotein alcoho 98.9 2.9E-07 9.9E-12 93.3 24.6 195 218-433 246-529 (677)
228 1yiq_A Quinohemoprotein alcoho 98.9 2.2E-06 7.4E-11 87.1 29.9 195 219-433 239-527 (689)
229 4a2l_A BT_4663, two-component 98.9 2.3E-05 7.9E-10 81.5 37.2 248 214-496 262-523 (795)
230 1mda_H Methylamine dehydrogena 98.8 9.2E-08 3.1E-12 88.7 16.4 254 37-367 69-359 (368)
231 3hxj_A Pyrrolo-quinoline quino 98.8 3.5E-07 1.2E-11 84.2 19.7 211 226-495 107-320 (330)
232 2hz6_A Endoplasmic reticulum t 98.8 1.3E-09 4.5E-14 102.2 2.8 186 122-420 8-200 (369)
233 2hz6_A Endoplasmic reticulum t 98.8 4E-09 1.4E-13 99.0 5.4 189 43-363 8-201 (369)
234 2fp8_A Strictosidine synthase; 98.7 4.6E-06 1.6E-10 76.5 23.5 157 216-412 127-314 (322)
235 4a2l_A BT_4663, two-component 98.7 0.00016 5.5E-09 75.1 37.7 245 214-496 309-568 (795)
236 3q7m_A Lipoprotein YFGL, BAMB; 98.6 1E-05 3.5E-10 76.0 24.0 147 227-415 189-341 (376)
237 1npe_A Nidogen, entactin; glyc 98.6 5.1E-05 1.8E-09 67.3 27.0 220 33-393 36-263 (267)
238 2p4o_A Hypothetical protein; p 98.6 5.4E-05 1.9E-09 68.7 27.4 235 33-402 32-279 (306)
239 2iwa_A Glutamine cyclotransfer 98.6 4.8E-05 1.6E-09 66.5 25.6 172 204-415 10-185 (266)
240 2ece_A 462AA long hypothetical 98.6 7.3E-06 2.5E-10 76.5 21.4 156 224-412 93-290 (462)
241 3hxj_A Pyrrolo-quinoline quino 98.6 6.2E-06 2.1E-10 75.8 19.5 180 215-453 137-316 (330)
242 2iwa_A Glutamine cyclotransfer 98.5 3.3E-05 1.1E-09 67.5 22.6 165 219-412 70-238 (266)
243 2p4o_A Hypothetical protein; p 98.5 0.00019 6.6E-09 65.0 28.6 162 216-410 73-241 (306)
244 1kb0_A Quinohemoprotein alcoho 98.5 2E-05 6.7E-10 79.9 24.0 93 286-411 457-567 (677)
245 3nol_A Glutamine cyclotransfer 98.5 3.9E-05 1.3E-09 66.2 21.4 170 204-415 32-205 (262)
246 3v9f_A Two-component system se 98.5 0.00051 1.7E-08 71.2 34.2 248 214-496 257-521 (781)
247 1kv9_A Type II quinohemoprotei 98.5 0.00014 4.9E-09 73.5 29.2 178 219-421 234-497 (668)
248 1fwx_A Nitrous oxide reductase 98.4 8.2E-06 2.8E-10 78.9 17.5 164 234-425 174-384 (595)
249 1fwx_A Nitrous oxide reductase 98.4 1.3E-05 4.5E-10 77.6 18.8 147 224-412 99-309 (595)
250 3nok_A Glutaminyl cyclase; bet 98.4 6.5E-05 2.2E-09 64.9 21.2 187 204-434 44-245 (268)
251 3mbr_X Glutamine cyclotransfer 98.4 0.00038 1.3E-08 59.6 25.7 170 204-415 10-183 (243)
252 3qqz_A Putative uncharacterize 98.4 0.0008 2.7E-08 58.4 28.5 178 215-410 70-252 (255)
253 3nol_A Glutamine cyclotransfer 98.4 2.3E-05 7.7E-10 67.7 17.6 146 226-400 96-244 (262)
254 1yiq_A Quinohemoprotein alcoho 98.4 4.4E-05 1.5E-09 77.5 22.8 79 285-396 454-533 (689)
255 3v64_C Agrin; beta propeller, 98.4 0.0015 5E-08 60.3 31.0 173 216-431 117-294 (349)
256 3nok_A Glutaminyl cyclase; bet 98.4 7E-05 2.4E-09 64.7 19.6 198 110-400 55-254 (268)
257 3v65_B Low-density lipoprotein 98.4 0.0008 2.7E-08 63.1 28.9 171 217-431 161-337 (386)
258 3v9f_A Two-component system se 98.4 0.004 1.4E-07 64.5 37.0 239 214-496 312-565 (781)
259 3mbr_X Glutamine cyclotransfer 98.4 9.8E-05 3.4E-09 63.2 20.2 210 86-400 8-223 (243)
260 2xe4_A Oligopeptidase B; hydro 98.3 0.00061 2.1E-08 70.1 29.7 74 215-295 271-354 (751)
261 2ad6_A Methanol dehydrogenase 98.3 0.00033 1.1E-08 69.4 24.8 59 344-420 444-502 (571)
262 1k3i_A Galactose oxidase precu 98.2 0.00022 7.4E-09 72.3 23.0 76 37-147 190-279 (656)
263 3tc9_A Hypothetical hydrolase; 98.2 0.0015 5.2E-08 62.1 27.5 71 217-295 228-301 (430)
264 2fp8_A Strictosidine synthase; 98.2 0.0008 2.7E-08 61.4 24.4 162 216-411 20-216 (322)
265 3qqz_A Putative uncharacterize 98.2 0.00084 2.9E-08 58.3 22.9 219 33-351 27-251 (255)
266 2xbg_A YCF48-like protein; pho 98.1 0.0048 1.7E-07 56.3 30.5 156 216-412 123-279 (327)
267 4hw6_A Hypothetical protein, I 98.1 0.0032 1.1E-07 59.9 26.8 180 216-410 229-432 (433)
268 2xe4_A Oligopeptidase B; hydro 98.0 0.00053 1.8E-08 70.5 21.8 118 212-353 170-304 (751)
269 1w6s_A Methanol dehydrogenase 98.0 0.0013 4.3E-08 65.3 23.4 59 344-420 453-511 (599)
270 1flg_A Protein (quinoprotein e 98.0 0.0014 4.9E-08 64.9 23.3 60 344-421 466-525 (582)
271 1ijq_A LDL receptor, low-densi 97.9 0.012 4.1E-07 53.4 31.6 158 216-415 78-242 (316)
272 3p5b_L Low density lipoprotein 97.8 0.021 7.2E-07 53.6 31.7 174 215-431 159-339 (400)
273 2ad6_A Methanol dehydrogenase 97.8 0.0082 2.8E-07 59.4 25.5 25 123-147 115-139 (571)
274 3ei3_A DNA damage-binding prot 97.8 0.054 1.8E-06 58.0 34.0 121 277-432 845-978 (1158)
275 3tc9_A Hypothetical hydrolase; 97.8 0.015 5.2E-07 55.2 25.6 154 216-411 138-301 (430)
276 2xbg_A YCF48-like protein; pho 97.8 0.023 7.9E-07 51.7 27.7 159 213-409 161-320 (327)
277 3v65_B Low-density lipoprotein 97.7 0.0097 3.3E-07 55.7 23.1 157 215-412 116-278 (386)
278 3v64_C Agrin; beta propeller, 97.7 0.026 8.9E-07 51.9 25.5 156 216-412 74-235 (349)
279 3sov_A LRP-6, low-density lipo 97.7 0.029 9.8E-07 50.8 28.4 157 216-415 80-242 (318)
280 1kv9_A Type II quinohemoprotei 97.6 0.017 5.7E-07 58.4 24.7 63 285-366 437-500 (668)
281 1flg_A Protein (quinoprotein e 97.6 0.062 2.1E-06 53.2 30.1 25 123-147 117-141 (582)
282 3m0c_C LDL receptor, low-densi 97.6 0.084 2.9E-06 54.1 31.3 158 215-415 471-636 (791)
283 3sre_A PON1, serum paraoxonase 97.6 0.031 1.1E-06 51.1 23.4 167 216-411 51-252 (355)
284 4hw6_A Hypothetical protein, I 97.5 0.0064 2.2E-07 57.8 19.1 170 215-409 182-372 (433)
285 3amr_A 3-phytase; beta-propell 97.5 0.027 9.4E-07 50.8 21.4 150 234-410 98-262 (355)
286 2p9w_A MAL S 1 allergenic prot 97.5 0.02 7E-07 51.2 19.6 182 212-412 10-216 (334)
287 1ijq_A LDL receptor, low-densi 97.5 0.06 2.1E-06 48.6 26.6 122 215-362 120-246 (316)
288 1k3i_A Galactose oxidase precu 97.4 0.028 9.7E-07 56.7 22.3 76 214-297 242-325 (656)
289 1n7d_A LDL receptor, low-densi 97.4 0.0021 7.2E-08 65.2 13.9 157 217-414 455-617 (699)
290 3p5b_L Low density lipoprotein 97.4 0.099 3.4E-06 49.0 27.0 122 215-362 202-328 (400)
291 2ism_A Putative oxidoreductase 97.4 0.088 3E-06 48.4 24.1 114 215-341 31-152 (352)
292 3m0c_C LDL receptor, low-densi 97.3 0.16 5.5E-06 52.0 27.1 119 215-360 514-638 (791)
293 2p9w_A MAL S 1 allergenic prot 97.3 0.0094 3.2E-07 53.3 15.6 76 216-295 138-215 (334)
294 4a0p_A LRP6, LRP-6, low-densit 97.3 0.19 6.5E-06 50.1 32.3 154 216-415 81-241 (628)
295 3sov_A LRP-6, low-density lipo 97.2 0.097 3.3E-06 47.3 22.2 120 215-362 122-246 (318)
296 1w6s_A Methanol dehydrogenase 97.2 0.089 3.1E-06 52.1 23.6 33 333-366 482-515 (599)
297 3kya_A Putative phosphatase; s 97.2 0.036 1.2E-06 53.0 19.8 117 216-352 187-340 (496)
298 3ei3_A DNA damage-binding prot 97.2 0.35 1.2E-05 51.9 34.4 37 110-146 554-595 (1158)
299 3sre_A PON1, serum paraoxonase 97.2 0.13 4.6E-06 46.9 22.7 154 216-410 113-297 (355)
300 2ism_A Putative oxidoreductase 97.1 0.18 6.2E-06 46.2 24.2 27 33-60 31-57 (352)
301 1n7d_A LDL receptor, low-densi 97.0 0.0058 2E-07 62.0 12.6 121 216-362 497-622 (699)
302 3pbp_A Nucleoporin NUP82; beta 96.9 0.14 4.8E-06 47.4 19.3 126 216-349 67-208 (452)
303 3a9g_A Putative uncharacterize 96.9 0.27 9.4E-06 45.1 23.7 27 33-60 29-55 (354)
304 3s94_A LRP-6, low-density lipo 96.8 0.45 1.6E-05 47.3 27.1 155 215-414 84-246 (619)
305 3s25_A Hypothetical 7-bladed b 96.8 0.13 4.6E-06 45.9 18.6 137 221-411 110-255 (302)
306 2xzh_A Clathrin heavy chain 1; 96.8 0.26 9E-06 43.8 26.8 169 215-415 152-336 (365)
307 3amr_A 3-phytase; beta-propell 96.8 0.3 1E-05 44.2 23.1 130 216-365 129-275 (355)
308 3kya_A Putative phosphatase; s 96.7 0.44 1.5E-05 45.6 28.0 160 216-410 140-340 (496)
309 1bpo_A Protein (clathrin); cla 96.6 0.45 1.5E-05 44.2 27.9 169 215-415 151-335 (494)
310 3pbp_A Nucleoporin NUP82; beta 96.6 0.47 1.6E-05 44.0 22.1 82 325-415 67-162 (452)
311 2vpj_A Kelch-like protein 12; 96.5 0.41 1.4E-05 42.6 20.1 22 391-412 253-279 (301)
312 3s94_A LRP-6, low-density lipo 96.5 0.8 2.8E-05 45.5 39.9 205 31-298 38-246 (619)
313 2xzh_A Clathrin heavy chain 1; 96.4 0.46 1.6E-05 42.3 21.8 129 268-430 71-206 (365)
314 3a9g_A Putative uncharacterize 96.4 0.11 3.7E-06 47.8 15.5 114 214-341 28-152 (354)
315 1cru_A Protein (soluble quinop 96.0 0.51 1.8E-05 44.9 18.3 116 215-342 27-162 (454)
316 4a0p_A LRP6, LRP-6, low-densit 96.0 1.5 5E-05 43.7 43.4 200 32-297 36-239 (628)
317 2g8s_A Glucose/sorbosone dehyd 95.8 1.1 3.6E-05 41.1 26.2 30 110-141 18-47 (353)
318 2g8s_A Glucose/sorbosone dehyd 95.8 1.1 3.6E-05 41.1 26.4 30 33-62 18-47 (353)
319 1xi4_A Clathrin heavy chain; a 95.7 0.8 2.7E-05 49.3 19.5 155 190-367 125-302 (1630)
320 1tl2_A L10, protein (tachylect 95.7 0.23 7.8E-06 41.5 12.4 113 265-406 42-158 (236)
321 3s25_A Hypothetical 7-bladed b 95.6 1.1 3.9E-05 39.8 21.3 135 224-413 23-178 (302)
322 1tl2_A L10, protein (tachylect 95.6 0.32 1.1E-05 40.6 13.0 113 215-348 41-158 (236)
323 2xn4_A Kelch-like protein 2; s 95.6 1.2 4E-05 39.6 19.8 22 391-412 251-277 (302)
324 3das_A Putative oxidoreductase 95.4 1.6 5.3E-05 39.7 29.0 115 214-340 31-156 (347)
325 3ii7_A Kelch-like protein 7; p 95.3 1.5 5.2E-05 38.9 21.3 23 391-413 247-274 (306)
326 1bpo_A Protein (clathrin); cla 95.2 1.9 6.6E-05 40.1 25.6 130 268-431 70-206 (494)
327 1cru_A Protein (soluble quinop 94.7 2.9 0.0001 39.6 28.7 32 33-64 27-58 (454)
328 3ii7_A Kelch-like protein 7; p 93.3 4.1 0.00014 36.0 17.1 23 43-65 55-81 (306)
329 1zgk_A Kelch-like ECH-associat 93.3 4.2 0.00014 36.1 21.3 22 391-412 262-288 (308)
330 2uvk_A YJHT; unknown function, 92.4 6.1 0.00021 35.8 20.7 28 388-415 313-346 (357)
331 3das_A Putative oxidoreductase 92.4 6.2 0.00021 35.7 27.4 33 32-64 31-63 (347)
332 1xi4_A Clathrin heavy chain; a 91.9 3.8 0.00013 44.4 15.3 130 268-431 70-206 (1630)
333 4asc_A Kelch repeat and BTB do 91.7 6.8 0.00023 34.7 20.1 23 274-297 148-176 (315)
334 2vpj_A Kelch-like protein 12; 91.5 6.9 0.00024 34.4 17.0 64 225-297 159-233 (301)
335 2be1_A Serine/threonine-protei 91.3 5.8 0.0002 35.8 14.2 22 45-66 11-32 (339)
336 1zgk_A Kelch-like ECH-associat 89.7 10 0.00035 33.5 17.3 64 225-297 168-242 (308)
337 2xn4_A Kelch-like protein 2; s 89.4 7.3 0.00025 34.2 13.5 64 225-297 204-278 (302)
338 3ott_A Two-component system se 89.2 21 0.00071 36.4 34.7 172 215-412 324-503 (758)
339 2wg3_C Hedgehog-interacting pr 89.0 16 0.00054 34.6 18.5 60 215-274 14-79 (463)
340 2woz_A Kelch repeat and BTB do 85.9 18 0.00061 32.0 20.4 23 274-297 158-186 (318)
341 3qhy_B Beta-lactamase inhibito 82.5 24 0.00082 30.7 21.4 215 216-495 25-242 (282)
342 2zwa_A Leucine carboxyl methyl 81.2 48 0.0016 33.3 18.6 155 225-413 451-637 (695)
343 4asc_A Kelch repeat and BTB do 79.8 31 0.0011 30.3 18.2 23 274-297 196-223 (315)
344 3sbq_A Nitrous-oxide reductase 79.3 5.4 0.00018 38.4 7.6 78 216-295 324-408 (638)
345 4gq2_M Nucleoporin NUP120; bet 79.1 30 0.001 36.3 14.2 35 264-299 236-270 (950)
346 2zwa_A Leucine carboxyl methyl 75.8 61 0.0021 32.5 15.0 27 121-147 499-527 (695)
347 2uvk_A YJHT; unknown function, 73.5 51 0.0017 29.5 17.3 23 43-65 65-97 (357)
348 2woz_A Kelch repeat and BTB do 71.0 54 0.0018 28.8 17.1 23 274-297 206-233 (318)
349 3f7f_A Nucleoporin NUP120; nuc 71.0 89 0.0031 31.3 14.1 38 110-151 222-259 (729)
350 2be1_A Serine/threonine-protei 70.9 4.4 0.00015 36.5 4.7 115 277-420 11-138 (339)
351 3qhy_B Beta-lactamase inhibito 70.7 52 0.0018 28.5 22.6 145 216-412 103-247 (282)
352 3sbq_A Nitrous-oxide reductase 69.0 12 0.00042 36.1 7.2 72 324-411 323-408 (638)
353 3q6k_A 43.2 kDa salivary prote 67.2 76 0.0026 29.0 18.2 156 236-411 124-306 (381)
354 3ott_A Two-component system se 56.0 1.7E+02 0.0059 29.5 36.5 161 216-411 192-352 (758)
355 4fhn_B Nucleoporin NUP120; pro 50.5 43 0.0015 36.1 8.5 34 265-299 239-272 (1139)
356 4gq2_M Nucleoporin NUP120; bet 48.3 1E+02 0.0034 32.4 10.7 39 216-255 237-276 (950)
357 2wg3_C Hedgehog-interacting pr 43.7 2.1E+02 0.0072 26.9 28.6 30 33-62 14-44 (463)
358 4a9v_A PHOX; hydrolase, beta-p 42.9 88 0.003 30.4 8.4 62 324-400 476-550 (592)
359 3zwu_A Alkaline phosphatase PH 37.8 95 0.0032 30.4 8.0 59 326-399 478-549 (592)
360 3q6k_A 43.2 kDa salivary prote 34.8 2.6E+02 0.009 25.4 20.1 124 215-352 152-305 (381)
361 4fhn_B Nucleoporin NUP120; pro 30.4 38 0.0013 36.5 4.2 31 385-415 242-272 (1139)
362 3f7f_A Nucleoporin NUP120; nuc 30.3 55 0.0019 32.8 4.9 33 32-66 221-253 (729)
363 3zwu_A Alkaline phosphatase PH 29.2 1.1E+02 0.0037 29.9 6.8 60 265-341 477-548 (592)
364 4a9v_A PHOX; hydrolase, beta-p 21.3 4.8E+02 0.016 25.4 9.4 59 215-282 476-548 (592)
No 1
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.8e-48 Score=376.32 Aligned_cols=435 Identities=45% Similarity=0.810 Sum_probs=318.5
Q ss_pred ccccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc
Q 010933 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY 89 (497)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (497)
..+.|++.|+|++ ..+.++|.+.|++++|+|+|++||+|+.||.|+|||+.+++.. ......+++.
T Consensus 8 ~~~~w~~~q~~~~--~~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~------------~~~~~~~~~~ 73 (447)
T 3dw8_B 8 NDIQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKI------------QSHSRGEYNV 73 (447)
T ss_dssp CCCCCEEEECCSC--SSSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCCEEE
T ss_pred cceeEEEEEeccc--ccccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCC------------CcccccceeE
Confidence 4567999999987 4556789999999999999999999999999999999876420 0111234566
Q ss_pred cccccccCcccccccccccccceeEEEEEecCCC--CEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~--~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
...+.+|.++|++++++.+.+.|++++|+ |++ ..|++++.|+.|++|++..+...... .... ...+
T Consensus 74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~--~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~---------~~~g 141 (447)
T 3dw8_B 74 YSTFQSHEPEFDYLKSLEIEEKINKIRWL--PQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLK---------EEDG 141 (447)
T ss_dssp EEEEECCCCEEEGGGTEEECCCCCEEEEC--CCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC-------------
T ss_pred ecccccccccccccccccccCceEEEEEc--CCCCcceEEEeCCCCeEEEEecccccCCcce-eccc---------Cccc
Confidence 88899999999999999999999999995 565 79999999999999999876543210 0000 0011
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCce
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 247 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~ 247 (497)
........... . ...+..........+.+.+..+|...|.+++|+|+++.|++|.|+.|++||++..++
T Consensus 142 ~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 210 (447)
T 3dw8_B 142 RYRDPTTVTTL-R----------VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR 210 (447)
T ss_dssp ----CCCCCSC-C----------CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEE
T ss_pred cccCcccccce-E----------eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCc
Confidence 10000000000 0 000000000112234455557899999999999999999999999999999986667
Q ss_pred eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933 248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 327 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 327 (497)
...++..++..+.+|...|.+++|+|+++.+|++++.||.|++||+++++........+..|.. +.....+.+|...|.
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~ 289 (447)
T 3dw8_B 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED-PSNRSFFSEIISSIS 289 (447)
T ss_dssp EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC------CCHHHHHTTCEE
T ss_pred eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC-ccccccccccCceEE
Confidence 7777767777788999999999999997679999999999999999998764433456665322 233344566667999
Q ss_pred EEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933 328 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 407 (497)
Q Consensus 328 ~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw 407 (497)
+++|+|+|++|++++++.|++||++..++++..+.+|...+..+|..+..++++++..++|+|++++|++|+.||.|++|
T Consensus 290 ~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 290 DVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 369 (447)
T ss_dssp EEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred EEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEE
Confidence 99999999999998779999999986588899999998777666666666777666779999999999999999999999
Q ss_pred EcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEE
Q 010933 408 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 487 (497)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~ 487 (497)
|+.+++. ..+.+|..+.......+. .. +..++.... ........++...|.+++|||++++||++
T Consensus 370 d~~~~~~--~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~p~~~~la~~ 434 (447)
T 3dw8_B 370 DRNTKRD--ITLEASRENNKPRTVLKP--RK------VCASGKRKK-----DEISVDSLDFNKKILHTAWHPKENIIAVA 434 (447)
T ss_dssp ETTTCCE--EEEECCSTTCCTTCBCCC--CC------EECSSCCCT-----TCEEGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred EcCCCcc--eeeeecccccccccccCC--cc------ccccCCccc-----ccccccccccCCceeEEEECCCCCEEEEE
Confidence 9998744 477777766554443331 11 222222111 01122345677899999999999999999
Q ss_pred eCCceEEEeC
Q 010933 488 NGNSLFFHYA 497 (497)
Q Consensus 488 ~~~~~~i~~~ 497 (497)
+.+++|+|++
T Consensus 435 ~~~~~~~~~~ 444 (447)
T 3dw8_B 435 TTNNLYIFQD 444 (447)
T ss_dssp CSSCEEEEEC
T ss_pred ecceeeeecc
Confidence 9999999974
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-46 Score=380.17 Aligned_cols=398 Identities=14% Similarity=0.136 Sum_probs=291.4
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. ....++.+|.
T Consensus 56 ~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~---------------------~~~~~~~~~~----------- 103 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------------------ILKTTIPVFS----------- 103 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------------CEEEEEECSS-----------
T ss_pred cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc---------------------eeeEeecccC-----------
Confidence 36999999999999999999999999999999875432 2345678898
Q ss_pred ccceeEEEEEecCCCCEEEEEeCC----ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcc-cccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYH 183 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 183 (497)
++|.+++| +|++++|++++.+ +.|++||.. ...... ..+.+.+....+.++.. .+++
T Consensus 104 -~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~l-------------~gh~~~v~~v~f~p~~~~~l~s 165 (611)
T 1nr0_A 104 -GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTG--TSNGNL-------------TGQARAMNSVDFKPSRPFRIIS 165 (611)
T ss_dssp -SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTC--CBCBCC-------------CCCSSCEEEEEECSSSSCEEEE
T ss_pred -CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeCC--CCccee-------------cCCCCCceEEEECCCCCeEEEE
Confidence 88999999 7899999998865 478888843 222111 11233444555566654 3666
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
++. ++.+++|+... .+++..+ .+|...|.+++|+|+|++|++| .|++|++||+. .++....+........+|
T Consensus 166 ~s~--D~~v~lwd~~~---~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~-~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 166 GSD--DNTVAIFEGPP---FKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp EET--TSCEEEEETTT---BEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEECBCTTSSSCSS
T ss_pred EeC--CCeEEEEECCC---CeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECC-CCcEeeeecccccccccc
Confidence 665 89999999763 4566666 8999999999999999999999 99999999998 454554421111112279
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccccc------------------------------c
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE------------------------------S 312 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~------------------------------~ 312 (497)
...|.+++|+|++ .+|++++.|+.|++||+++++... .+..+.. .
T Consensus 239 ~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~ 313 (611)
T 1nr0_A 239 SGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEK----TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313 (611)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE----EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTT
T ss_pred CCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceee----eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCC
Confidence 9999999999999 999999999999999999876442 1111000 0
Q ss_pred cCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeee-eecccccccccc-----------------
Q 010933 313 HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF-KIHEHLRPKLCD----------------- 373 (497)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~----------------- 373 (497)
......+.+|...|++++|+|+|++|++++ |+.|++||+.+ ++....+ .+|...+..++.
T Consensus 314 ~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392 (611)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence 001123468999999999999999999986 59999999986 4443332 222211100000
Q ss_pred --c-----------------------CCCC------------------------CccceeEEEEcCCCCEEEEEeCCCcE
Q 010933 374 --L-----------------------YNND------------------------SIFDKFECSVSGDGLHFATGSYSNLL 404 (497)
Q Consensus 374 --~-----------------------~~~~------------------------~~~~~~~~~~s~~~~~l~s~~~dg~i 404 (497)
. ...+ ....+.+++|+|||++||+|+.|+.|
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 0 0000 00124689999999999999999999
Q ss_pred EEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC---CCCccc--ccccCCCeEEEEEe
Q 010933 405 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS---SGHHEL--SYNLSSKLLHLAWH 478 (497)
Q Consensus 405 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~---~~~~~~--~~~~~~~i~~l~~~ 478 (497)
++||+.++........+|...|++++|+| ++++ |++++.|+. ++|.. .+.... ...|...|.+++|+
T Consensus 473 ~lwd~~~~~~~~~~~~~h~~~v~~v~fsp--dg~~-----las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs 545 (611)
T 1nr0_A 473 HVYKLSGASVSEVKTIVHPAEITSVAFSN--NGAF-----LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 545 (611)
T ss_dssp EEEEEETTEEEEEEEEECSSCEEEEEECT--TSSE-----EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred EEEEccCCceeeeeccCCCCceEEEEECC--CCCE-----EEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC
Confidence 99999876432223378999999999999 7777 999999999 99932 222222 23499999999999
Q ss_pred cCCCEEEEEe-CCceEEEe
Q 010933 479 PTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 479 p~~~~la~~~-~~~~~i~~ 496 (497)
|||++||+|+ ++.+++|+
T Consensus 546 pdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 546 PDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp TTSSEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEECCCcEEEEE
Confidence 9999999999 55599997
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.8e-44 Score=359.20 Aligned_cols=354 Identities=19% Similarity=0.256 Sum_probs=292.4
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|...|.+++|+|+|++|++|+.|+.|++||... +.+..+.+|.
T Consensus 219 ~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~------------------------~~~~~~~~~~------------ 262 (577)
T 2ymu_A 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------------------------QLLQTLTGHS------------ 262 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS------------------------CEEEEECCCS------------
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC------------------------CEEEEEecCC------------
Confidence 5889999999999999999999999999999643 3356778898
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| +|+++.+++++.|+.|++|+........+ . .+.+.+....+.++...++.++. +
T Consensus 263 ~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~~~~~~~~~-~-------------~h~~~v~~~~~~~~~~~l~t~~~--d 324 (577)
T 2ymu_A 263 SSVNGVAF--RPDGQTIASASDDKTVKLWNRNGQLLQTL-T-------------GHSSSVWGVAFSPDGQTIASASD--D 324 (577)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEE-C-------------CCSSCEEEEEECTTSSEEEEEET--T
T ss_pred CCEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCcEEEEE-e-------------cCCCCeEEEEECCCCCEEEEEeC--C
Confidence 88999999 68999999999999999999754332221 1 11233444455666777776664 8
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+.+++|+.... .+..+ .+|...+.+++|+|+++.+++| .|+.|++||.. ++.... +.+|...|.+
T Consensus 325 ~~i~~w~~~~~----~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~~~~-------~~~~~~~v~~ 390 (577)
T 2ymu_A 325 KTVKLWNRNGQ----HLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-------LTGHSSSVRG 390 (577)
T ss_dssp SCEEEEETTSC----EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--CCEEEE-------EECCSSCEEE
T ss_pred CeEEEEeCCCC----eeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCEEEE-------ecCCCCCeEE
Confidence 89999997643 44444 7899999999999999999999 99999999965 344443 6689999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+|++ ++|++++.|+.|++||.. ++.. ..+ .+|...|.+++|+|++++|++++ |+.|+
T Consensus 391 ~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~~----~~~-------------~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 391 VAFSPDG-QTIASASDDKTVKLWNRN-GQLL----QTL-------------TGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp EEECTTS-SCEEEEETTSEEEEECTT-CCEE----EEE-------------ECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCCC-CEEEEEeCCCEEEEEeCC-CCEE----EEe-------------cCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 9999999 999999999999999964 3322 333 34568899999999999999985 59999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+||+. ++.+..+.+|...+ ++++|+|++++|++++.|+.|++||.. + .....+.+|..+|+
T Consensus 452 ~w~~~--~~~~~~~~~~~~~v---------------~~~~~spd~~~las~~~d~~i~iw~~~-~-~~~~~~~~h~~~v~ 512 (577)
T 2ymu_A 452 LWNRN--GQLLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVR 512 (577)
T ss_dssp EEETT--SCEEEEEECCSSCE---------------EEEEECTTSCEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEE
T ss_pred EEECC--CCEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCEEEEEcCC-C-CEEEEEeCCCCCEE
Confidence 99974 77888888888764 789999999999999999999999964 4 44588999999999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eec-CCCCCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw-~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
+++|+| ++++ |++++.|+. ++| ..++....+.+|...|++++|+|||++|++++.| .+++|+
T Consensus 513 ~l~~s~--dg~~-----l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 513 GVAFSP--DGQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECT--TSSC-----EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEcC--CCCE-----EEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999 6777 999999999 999 4455566678999999999999999999999854 599995
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.5e-44 Score=360.59 Aligned_cols=383 Identities=11% Similarity=0.111 Sum_probs=282.0
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.+.+.+.+++|+|||++||+++ ++.|+||++.+++. ...+.+|.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~-----------------------~~~~~~h~------------ 59 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS------------ 59 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS------------
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc-----------------------CeEecCCC------------
Confidence 3567889999999999999988 56999999976543 66788999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|++++| +|++++|++++.|++|+|||+.+++...... ...+.+.+....+.++...++.++...+
T Consensus 60 ~~v~~~~~--spdg~~lasg~~d~~v~lWd~~~~~~~~~~~-----------~~~~~~~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 60 HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTT-----------IPVFSGPVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEE-----------EECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred CceEEEEE--CCCCcEEEEEeCCCCEEEeECCCCcceeeEe-----------ecccCCceEEEEECCCCCEEEEEECCCC
Confidence 88999999 7899999999999999999997654321111 1112345666667777777776654322
Q ss_pred --cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 190 --MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 190 --~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
+.+++|+.. ++...+ .+|...|.+++|+|++. .|++| .|++|++||.. ..+.... +.+|...
T Consensus 127 ~~~~v~~wd~~-----~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-~~~~~~~-------l~~H~~~ 192 (611)
T 1nr0_A 127 RFGHVFLFDTG-----TSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKST-------FGEHTKF 192 (611)
T ss_dssp CSEEEEETTTC-----CBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-TBEEEEE-------ECCCSSC
T ss_pred ceeEEEEeeCC-----CCccee-cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC-CCeEeee-------eccccCc
Confidence 467788743 344444 89999999999999987 58888 99999999988 5555554 7889999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 344 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 344 (497)
|.+++|+|++ .+|++++.|+.|++||+++++.. ..+.. ......+|...|.+++|+|+|++|++++ |+
T Consensus 193 V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~----~~~~~------~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~ 261 (611)
T 1nr0_A 193 VHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFED------DSLKNVAHSGSVFGLTWSPDGTKIASASADK 261 (611)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBC------TTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEEECCCC-CEEEEEECCCcEEEEECCCCcEe----eeecc------ccccccccCCCEEEEEECCCCCEEEEEeCCC
Confidence 9999999999 99999999999999999887644 22211 0001125788999999999999999986 59
Q ss_pred eEEEEecCCCCceeeeeeecccccc------------------------------cccccCCCCCccceeEEEEcCCCCE
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRP------------------------------KLCDLYNNDSIFDKFECSVSGDGLH 394 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~s~~~~~ 394 (497)
.|++||+++ ++++..+..+..... ....+... ...+++++|+|++++
T Consensus 262 ~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh--~~~v~~l~~spdg~~ 338 (611)
T 1nr0_A 262 TIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH--NKAITALSSSADGKT 338 (611)
T ss_dssp EEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSE
T ss_pred eEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC--CCCEEEEEEeCCCCE
Confidence 999999986 666665543211000 00000000 112479999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCcceEEEecc----------------------------------------------------
Q 010933 395 FATGSYSNLLRIFSHGVGSAGGITVEAG---------------------------------------------------- 422 (497)
Q Consensus 395 l~s~~~dg~i~vw~~~~~~~~~~~~~~~---------------------------------------------------- 422 (497)
|++++.|+.|++||+.++........+|
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 9999999999999998763321100112
Q ss_pred -----------------------------CcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCC-c--ccccccC
Q 010933 423 -----------------------------KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-H--ELSYNLS 469 (497)
Q Consensus 423 -----------------------------~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~-~--~~~~~~~ 469 (497)
...+.+++|+| ++++ +++|+.|+. ++|..... . ....+|.
T Consensus 419 ~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp--dg~~-----lasgs~D~~v~lwd~~~~~~~~~~~~~h~ 491 (611)
T 1nr0_A 419 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN--DKQF-----VAVGGQDSKVHVYKLSGASVSEVKTIVHP 491 (611)
T ss_dssp ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT--TSCE-----EEEEETTSEEEEEEEETTEEEEEEEEECS
T ss_pred EeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC--CCCE-----EEEeCCCCeEEEEEccCCceeeeeccCCC
Confidence 23345666666 5666 999999999 99943221 1 1226789
Q ss_pred CCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 470 SKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 470 ~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
..|++++|+|+|++||+++ ++.+++|+
T Consensus 492 ~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 492 AEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 9999999999999999999 55599986
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.2e-43 Score=355.98 Aligned_cols=367 Identities=19% Similarity=0.250 Sum_probs=286.4
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|++.|+|++|||||++||+|+.|+.|+|||.+ + +.+.++.+|+
T Consensus 13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~-----------------------~~~~~l~gh~----------- 57 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-----------------------QLLQTLTGHS----------- 57 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-S-----------------------CEEEEEECCS-----------
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-C-----------------------CEEEEEeCCC-----------
Confidence 3699999999999999999999999999999953 3 3367889999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc----------------------
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE---------------------- 166 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 166 (497)
+.|++++| +|++++|++++.|++|++||..... ......+ ...+..+.+.+..
T Consensus 58 -~~V~~l~f--spdg~~las~~~d~~i~vWd~~~~~-~~~~~~~-~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~ 132 (577)
T 2ymu_A 58 -SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQL-LQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 132 (577)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCE-EEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE
T ss_pred -CCEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCE-EEEEECC-CCCEEEEEECCCCCEEEEEcCCCceeeccccccee
Confidence 89999999 7899999999999999999975432 2222111 1112222211110
Q ss_pred ------------------------------------------------cCccccCCCCCcccccccccccCcceEEEeec
Q 010933 167 ------------------------------------------------KNFMNEHNPPSFAHGYHLEWTENMATKIANVG 198 (497)
Q Consensus 167 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (497)
+.+......++..+++.++ .++.+++|+..
T Consensus 133 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~~w~~~ 210 (577)
T 2ymu_A 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS--DDKTVKLWNRN 210 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSEEEEECTT
T ss_pred eeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEc--CCCEEEEEeCC
Confidence 0011111222333333333 36789999864
Q ss_pred CCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCc
Q 010933 199 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 277 (497)
Q Consensus 199 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 277 (497)
. +.+..+ .+|...|.+++|+|+++.|+++ .|+.|++||.. ++.... +.+|...|.+++|+|++ .
T Consensus 211 ~----~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~-------~~~~~~~v~~v~~~~d~-~ 275 (577)
T 2ymu_A 211 G----QLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-------LTGHSSSVNGVAFRPDG-Q 275 (577)
T ss_dssp S----CEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--SCEEEE-------ECCCSSCEEEEEECTTS-S
T ss_pred C----cEEEEE-ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEE-------EecCCCCEEEEEEcCCC-C
Confidence 3 455555 7899999999999999999999 99999999976 344443 67899999999999999 9
Q ss_pred EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCc
Q 010933 278 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 356 (497)
Q Consensus 278 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~ 356 (497)
.|++++.|+.|++||... +.. ..+ .+|...|.+++|+|++++|++++ ++.|++||+. +.
T Consensus 276 ~l~~~~~d~~i~~w~~~~-~~~----~~~-------------~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~--~~ 335 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRNG-QLL----QTL-------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQ 335 (577)
T ss_dssp EEEEEETTSCEEEEETTS-CEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--SC
T ss_pred EEEEEeCCCEEEEEeCCC-cEE----EEE-------------ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC--CC
Confidence 999999999999999653 222 233 34568899999999999999986 4999999986 56
Q ss_pred eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCC
Q 010933 357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 436 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 436 (497)
.+..+.+|...+ ++++|+|++++|++++.||.|++|+.. + .....+.+|..++++++|+| +
T Consensus 336 ~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~--d 396 (577)
T 2ymu_A 336 HLQTLTGHSSSV---------------WGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSP--D 396 (577)
T ss_dssp EEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECT--T
T ss_pred eeEEEeCCCCCE---------------EEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECC--C
Confidence 677777777654 689999999999999999999999964 3 44588999999999999998 6
Q ss_pred cccccccceeEeeccCc-eecC-CCCCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 437 ARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 437 ~~~~~~~~l~~~~~d~~-~iw~-~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
++. +++++.|+. ++|. .++......+|...|++++|+|++++||+++.| .+++|+
T Consensus 397 g~~-----l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 397 GQT-----IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp SSC-----EEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCE-----EEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 777 999999999 9994 344555677899999999999999999999955 488886
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-43 Score=338.25 Aligned_cols=280 Identities=18% Similarity=0.256 Sum_probs=245.9
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.++|++++|+|++++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----------------------~~~l~~h~----------- 150 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT----------- 150 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS-----------
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEeccC-----------
Confidence 36999999999999999999999999999999988743 67788999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|.+++| ++++.+|++|+.|++|++||+.++++.
T Consensus 151 -~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~~------------------------------------------ 185 (410)
T 1vyh_C 151 -DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECI------------------------------------------ 185 (410)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEE------------------------------------------
T ss_pred -CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCcee------------------------------------------
Confidence 88999999 688999999999999999999765532
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
..+ .+|...|.+++|+|+++.|++| .|+.|++||++ .+.+... +.+|...|.
T Consensus 186 ------------------~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-~~~~~~~-------~~~h~~~v~ 238 (410)
T 1vyh_C 186 ------------------RTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKT-------FTGHREWVR 238 (410)
T ss_dssp ------------------ECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEE-------EECCSSCEE
T ss_pred ------------------EEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------EeCCCccEE
Confidence 222 7899999999999999999999 99999999999 5555554 678999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-------------
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND------------- 334 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------------- 334 (497)
++.++|++ .+|++++.|+.|++||+++++.. ..+ .+|...|.+++|+|+
T Consensus 239 ~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~----~~~-------------~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 239 MVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AEL-------------REHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEE-------------CCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred EEEECCCC-CEEEEEcCCCeEEEEECCCCcee----eEe-------------cCCCceEEEEEEcCcccccchhhhcccc
Confidence 99999999 99999999999999999887543 233 335678999999996
Q ss_pred -------CCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933 335 -------GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 406 (497)
Q Consensus 335 -------g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v 406 (497)
|.+|++|+ |+.|++||+++ +.++..+.+|...+ ++++|+|++++|++|+.||.|++
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~~~~g~~l~s~s~D~~i~v 364 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDKTLRV 364 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTTEEEE
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcE---------------EEEEEcCCCCEEEEEeCCCeEEE
Confidence 67899886 59999999987 88999999998765 68999999999999999999999
Q ss_pred EEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 407 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 407 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
||+.+++.+ ..+.+|...|.+++|+| ++.. +++|+.|+. ++|
T Consensus 365 wd~~~~~~~-~~~~~h~~~v~~l~~~~--~~~~-----l~sgs~D~~i~vW 407 (410)
T 1vyh_C 365 WDYKNKRCM-KTLNAHEHFVTSLDFHK--TAPY-----VVTGSVDQTVKVW 407 (410)
T ss_dssp ECCTTSCCC-EEEECCSSCEEEEEECS--SSSC-----EEEEETTSEEEEE
T ss_pred EECCCCceE-EEEcCCCCcEEEEEEcC--CCCE-----EEEEeCCCcEEEE
Confidence 999887554 88999999999999999 5556 999999999 999
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.9e-43 Score=321.59 Aligned_cols=284 Identities=18% Similarity=0.201 Sum_probs=238.9
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+|+|++||+|+.||.|+|||+++++ .+..+..|.
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----------------------~~~~~~~~~------------ 55 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----------------------EVRSIQVTE------------ 55 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS------------
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eeEEeeccC------------
Confidence 489999999999999999999999999999998764 367788888
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.+|.+++| ++++++|++++.|++|++||+.+++..
T Consensus 56 ~~v~~~~~--~~~~~~l~s~s~d~~i~vwd~~~~~~~------------------------------------------- 90 (304)
T 2ynn_A 56 TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKV------------------------------------------- 90 (304)
T ss_dssp SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEE-------------------------------------------
T ss_pred CcEEEEEE--eCCCCEEEEECCCCEEEEEECCCCcEE-------------------------------------------
Confidence 88999999 578899999999999999999876632
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
..+ .+|...|.+++|+|++++|++| .|++|++||++........ +.+|...|.+
T Consensus 91 -----------------~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-------~~~h~~~v~~ 145 (304)
T 2ynn_A 91 -----------------VDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHEHFVMC 145 (304)
T ss_dssp -----------------EEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-------ECCCCSCEEE
T ss_pred -----------------EEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-------hcccCCcEEE
Confidence 222 7899999999999999999999 9999999999854454444 6789999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee--CCCEEEEEe-cCe
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRD-YMN 345 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~-~~~ 345 (497)
++|+|.+..+|++++.|+.|++||++++... ..+. .+|...+..+.|+| ++.+|++|+ |+.
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~~------------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~ 209 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTLT------------TGQERGVNYVDYYPLPDKPYMITASDDLT 209 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEEE------------CCCTTCEEEEEECCSTTCCEEEEEETTSE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCcc----ceec------------cCCcCcEEEEEEEEcCCCCEEEEEcCCCe
Confidence 9999943389999999999999999876532 1111 12346788899987 678999986 599
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
|++||+++ ++++..+.+|...+ ..++|+|++++|++|+.||.|++||+.+++. ...+..|...
T Consensus 210 i~iWd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~~~~~ 272 (304)
T 2ynn_A 210 IKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-EKTLNVGLER 272 (304)
T ss_dssp EEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCSSSS
T ss_pred EEEEeCCC-CccceeeCCCCCCE---------------EEEEECCCCCEEEEEcCCCeEEEEECCCCce-eeeccCCCcc
Confidence 99999997 88999999998765 6899999999999999999999999998854 4889999999
Q ss_pred eeeeEeecCCCcccccccceeEeeccCceec
Q 010933 426 NRKPILQAAPRARRSSLSNLTRGLYRQAHEN 456 (497)
Q Consensus 426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw 456 (497)
++++++.|.....+ +++|+.++..+|
T Consensus 273 ~~~~~~~~~~~~~~-----~asg~~~g~~~~ 298 (304)
T 2ynn_A 273 SWCIATHPTGRKNY-----IASGFDNGFTVL 298 (304)
T ss_dssp EEEEEECTTCGGGC-----EEEEETTEEEEE
T ss_pred EEEEEECCCCCceE-----EEEecCCceEEE
Confidence 99999988522233 788877776666
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.9e-43 Score=324.06 Aligned_cols=282 Identities=15% Similarity=0.219 Sum_probs=241.0
Q ss_pred ccCCcceEEEEEcCC----CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933 29 LQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 104 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~----g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 104 (497)
.+|.+.|++++|+|+ +++||+|+.|++|+||++..++. .....+.+|.
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------~~~~~l~gh~------- 80 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------DLQWSLEGHQ------- 80 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS-------
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------------eeeeeeccCC-------
Confidence 369999999999985 67999999999999999987532 3455688999
Q ss_pred ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
..|.+++| ++++.++++++.|++|++||+.+++...
T Consensus 81 -----~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~------------------------------------- 116 (321)
T 3ow8_A 81 -----LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIK------------------------------------- 116 (321)
T ss_dssp -----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred -----CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEE-------------------------------------
Confidence 88999999 6888999999999999999998776332
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
.+ ..|...+.+++|+|+++.|++| .|+.|++|+++.... ... +..|.
T Consensus 117 -----------------------~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~-------~~~~~ 164 (321)
T 3ow8_A 117 -----------------------SI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYS-------LDTRG 164 (321)
T ss_dssp -----------------------EE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEE-------EECSS
T ss_pred -----------------------EE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEE-------ecCCC
Confidence 22 5677788999999999999999 999999999994443 332 56788
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 343 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 343 (497)
..|.+++|+|++ ++|++++.||.|++||+++++.. ..+. +|...|.+++|+|++++|++|+.
T Consensus 165 ~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~----~~~~-------------~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 165 KFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLL----HTLE-------------GHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCCCEEEECTTSCEEEEECT
T ss_pred ceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEEc-------------ccCCceeEEEEcCCCCEEEEEcC
Confidence 899999999999 99999999999999999987644 3333 35678999999999999999864
Q ss_pred -CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933 344 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 422 (497)
Q Consensus 344 -~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 422 (497)
+.|++||++. ++....+.+|...+ .+++|+|++++|++++.|+.|++||+.+++. ...+.+|
T Consensus 227 dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~h 289 (321)
T 3ow8_A 227 DGYIKIYDVQH-ANLAGTLSGHASWV---------------LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-VHTFFDH 289 (321)
T ss_dssp TSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCC
T ss_pred CCeEEEEECCC-cceeEEEcCCCCce---------------EEEEECCCCCEEEEEeCCCcEEEEeCCCCEE-EEEEcCC
Confidence 9999999986 78888899888765 6899999999999999999999999998754 4888999
Q ss_pred CcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 423 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
...|.+++|++ ++.. |++++.|+. ++|
T Consensus 290 ~~~v~~v~~s~--~g~~-----l~s~~~d~~i~vw 317 (321)
T 3ow8_A 290 QDQVWGVKYNG--NGSK-----IVSVGDDQEIHIY 317 (321)
T ss_dssp SSCEEEEEECT--TSSE-----EEEEETTCCEEEE
T ss_pred CCcEEEEEECC--CCCE-----EEEEeCCCeEEEE
Confidence 99999999998 6666 999999999 999
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.8e-43 Score=328.44 Aligned_cols=291 Identities=13% Similarity=0.179 Sum_probs=216.7
Q ss_pred cccCCcceEEEEEcCCCCEEEEeec------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccc
Q 010933 28 ELQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 101 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g~~lasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 101 (497)
+..|...|++++|||||++||+|+. |+.|++|+..++.. .........+|.
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~-------------------~~~~~~~~~~~~---- 94 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP-------------------NESLCTAGVQTE---- 94 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC----------------------CGGGCSEEEECS----
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc-------------------ceeEecccCCCC----
Confidence 3469999999999999999999997 77899998776532 223334455677
Q ss_pred cccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccc
Q 010933 102 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 181 (497)
Q Consensus 102 ~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (497)
..|.+++|+ |++ .+++++.||+|++||+.+++.....
T Consensus 95 --------~~V~~~~~s--~d~-~~l~~s~dg~v~lWd~~~~~~~~~~-------------------------------- 131 (357)
T 4g56_B 95 --------AGVTDVAWV--SEK-GILVASDSGAVELWEILEKESLLVN-------------------------------- 131 (357)
T ss_dssp --------SCEEEEEEE--TTT-EEEEEETTSCEEEC--------CCC--------------------------------
T ss_pred --------CCEEEEEEc--CCC-CEEEEECCCEEEEeeccccceeEEE--------------------------------
Confidence 889999994 665 5677889999999999887633211
Q ss_pred cccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933 182 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 260 (497)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (497)
.....+|...|.+++|+|+++.|++| .|+.|++||++ .++.... +.
T Consensus 132 -------------------------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~-------~~ 178 (357)
T 4g56_B 132 -------------------------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKS-------YN 178 (357)
T ss_dssp -------------------------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEE-------EC
T ss_pred -------------------------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------Ec
Confidence 00115899999999999999999999 99999999999 5555554 67
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLL 339 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~ 339 (497)
+|...|.+++|+|++..++++++.|+.|++||+++++.. ..+.. ..|...+.+++|+|++ .+|+
T Consensus 179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~-----------~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDF-----------CASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCC-----------TTCCSCEEEEEECTTSTTEEE
T ss_pred CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeee-----------ccccccccchhhhhcccceEE
Confidence 899999999999998568999999999999999987654 22221 2234678999999975 6788
Q ss_pred EEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcceE
Q 010933 340 SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGI 417 (497)
Q Consensus 340 ~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~ 417 (497)
+|+ ++.|++||+++ ++++..+.+|...+ ++++|+|++ ++|++|+.|++|+|||+++++. .
T Consensus 244 ~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v---------------~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~--~ 305 (357)
T 4g56_B 244 CGDETGNVSLVNIKN-PDSAQTSAVHSQNI---------------TGLAYSYHSSPFLASISEDCTVAVLDADFSEV--F 305 (357)
T ss_dssp EEESSSCEEEEESSC-GGGCEEECCCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTSCEE--E
T ss_pred EeecccceeEEECCC-CcEeEEEeccceeE---------------EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE--e
Confidence 875 59999999986 88889999888764 799999987 5899999999999999988733 2
Q ss_pred EEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 418 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 418 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
...+|.+.|++++|+|. ++.. |++++.|+. ++|
T Consensus 306 ~~~~H~~~V~~vafsP~-d~~~-----l~s~s~Dg~v~iW 339 (357)
T 4g56_B 306 RDLSHRDFVTGVAWSPL-DHSK-----FTTVGWDHKVLHH 339 (357)
T ss_dssp EECCCSSCEEEEEECSS-STTE-----EEEEETTSCEEEE
T ss_pred EECCCCCCEEEEEEeCC-CCCE-----EEEEcCCCeEEEE
Confidence 33356666666555553 3333 555555555 555
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.2e-41 Score=317.47 Aligned_cols=284 Identities=13% Similarity=0.191 Sum_probs=237.8
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+|+|++||+|+.||.|+|||..+++. +..+..|.
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----------------------~~~~~~~~------------ 97 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS------------ 97 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEECSS------------
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----------------------ceEeecCC------------
Confidence 6999999999999999999999999999999887643 56677888
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| +|++.+|++++.|+.|++|++.++....
T Consensus 98 ~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~------------------------------------------ 133 (340)
T 1got_B 98 SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNV------------------------------------------ 133 (340)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSC------------------------------------------
T ss_pred ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcc------------------------------------------
Confidence 88999999 6899999999999999999987643110
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.....+ .+|...|.++.|++++. ++++ .|+.|++||++ .++.... +.+|...|.+
T Consensus 134 --------------~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~-~~~~~~~-------~~~h~~~v~~ 189 (340)
T 1got_B 134 --------------RVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE-TGQQTTT-------FTGHTGDVMS 189 (340)
T ss_dssp --------------EEEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT-TTEEEEE-------ECCCSSCEEE
T ss_pred --------------eeEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECC-CCcEEEE-------EcCCCCceEE
Confidence 112222 68999999999998876 6666 99999999998 5555554 6789999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+|++ .+|++++.|+.|++||++++... ..+. +|...|++++|+|++++|++|+ |+.|+
T Consensus 190 ~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~----~~~~-------------~h~~~v~~v~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 190 LSLAPDT-RLFVSGACDASAKLWDVREGMCR----QTFT-------------GHESDINAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTTCSEE----EEEC-------------CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEECCCC-CEEEEEeCCCcEEEEECCCCeeE----EEEc-------------CCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence 9999999 99999999999999999987543 3333 4568899999999999999986 59999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+||++. ++.+..+..+... ..+++++|+|++++|++|+.||.|++||+.+++. ...+.+|..+|.
T Consensus 252 iwd~~~-~~~~~~~~~~~~~-------------~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~~~~h~~~v~ 316 (340)
T 1got_B 252 LFDLRA-DQELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVS 316 (340)
T ss_dssp EEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEE
T ss_pred EEECCC-CcEEEEEccCCcc-------------cceEEEEECCCCCEEEEECCCCeEEEEEcccCcE-eeEeecCCCcEE
Confidence 999986 6666655432211 1236899999999999999999999999988754 478999999999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eec
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+++|+| ++.. |++|+.|+. ++|
T Consensus 317 ~~~~s~--dg~~-----l~s~s~D~~i~iW 339 (340)
T 1got_B 317 CLGVTD--DGMA-----VATGSWDSFLKIW 339 (340)
T ss_dssp EEEECT--TSSC-----EEEEETTSCEEEE
T ss_pred EEEEcC--CCCE-----EEEEcCCccEEec
Confidence 999998 6666 999999998 998
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=318.49 Aligned_cols=299 Identities=13% Similarity=0.118 Sum_probs=229.1
Q ss_pred CcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
.+..|...|.+++|+|||++|++++ |+++++||....... .. ...+..........|+
T Consensus 25 ~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~---~~---------~~~~~~~~~~~~~~~~--------- 82 (344)
T 4gqb_B 25 APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK---DP---------CAAPNEGFCSAGVQTE--------- 82 (344)
T ss_dssp SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES---SG---------GGTTCGGGCSEEEEES---------
T ss_pred CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec---cc---------cccCCcceeeeeeccC---------
Confidence 3445788999999999999999887 778888875321100 00 0000001111112233
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..|.+++|+ ++ ..|++++.||+|++||+.+++....
T Consensus 83 ---~~v~~~~~s--~d-~~l~~~s~dg~v~lWd~~~~~~~~~-------------------------------------- 118 (344)
T 4gqb_B 83 ---AGVADLTWV--GE-RGILVASDSGAVELWELDENETLIV-------------------------------------- 118 (344)
T ss_dssp ---SCEEEEEEE--TT-TEEEEEETTSEEEEEEECTTSSCEE--------------------------------------
T ss_pred ---CCEEEEEEe--CC-CeEEEEECCCEEEEEeccCCCceeE--------------------------------------
Confidence 789999994 55 5789999999999999988764321
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
.+....+|...|++++|+|+|++|++| .|+.|++||++ .++.+.. +.+|...
T Consensus 119 -------------------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~-------~~~h~~~ 171 (344)
T 4gqb_B 119 -------------------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSS-------YRAHAAQ 171 (344)
T ss_dssp -------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCSSC
T ss_pred -------------------eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------EcCcCCc
Confidence 111125899999999999999999999 99999999999 5666655 7899999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEe-c
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-Y 343 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~-~ 343 (497)
|.+++|+|++..+|++++.|+.|++||+++++.. ..+.. ..|...+.+++|+|+ +++|++|+ |
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC-----------SAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC---------------CCCEEEEEECSSCTTEEEEEETT
T ss_pred eEEEEecCCCCCceeeecccccccccccccccee----eeeec-----------ceeeccceeeeecCCCCcceEEeccC
Confidence 9999999998568999999999999999988654 22222 122356899999995 56788875 5
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAG 422 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 422 (497)
+.|++||+++ ++++..+.+|...+ ++++|+|++ ++|++|+.|++|+|||+.+++ ...+.+|
T Consensus 237 g~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~--~~~~~~H 298 (344)
T 4gqb_B 237 GTVSLVDTKS-TSCVLSSAVHSQCV---------------TGLVFSPHSVPFLASLSEDCSLAVLDSSLSE--LFRSQAH 298 (344)
T ss_dssp SEEEEEESCC---CCEEEECCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTCCE--EEEECCC
T ss_pred CcEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEccCCCeEEEEEeCCCeEEEEECCCCc--EEEEcCC
Confidence 9999999997 88999999998865 799999998 589999999999999998874 3568999
Q ss_pred CcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 423 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
.+.|++++|+|. ...+ |++++.|+. ++|.
T Consensus 299 ~~~V~~v~~sp~-~~~l-----las~s~D~~v~~w~ 328 (344)
T 4gqb_B 299 RDFVRDATWSPL-NHSL-----LTTVGWDHQVVHHV 328 (344)
T ss_dssp SSCEEEEEECSS-STTE-----EEEEETTSCEEEEE
T ss_pred CCCEEEEEEeCC-CCeE-----EEEEcCCCeEEEEE
Confidence 999999999994 2234 789999999 9993
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-40 Score=313.27 Aligned_cols=288 Identities=14% Similarity=0.193 Sum_probs=238.6
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.+.|+|++|+|+|++||+|+.||.|+|||..+++. ...+..|.
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~~----------- 106 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----------------------EHAVTMPC----------- 106 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECSS-----------
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----------------------ceEEecCC-----------
Confidence 36999999999999999999999999999999877643 45566777
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++| +|++.++++++.|+.+++|++........
T Consensus 107 -~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~---------------------------------------- 143 (354)
T 2pbi_B 107 -TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNENM---------------------------------------- 143 (354)
T ss_dssp -SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCS----------------------------------------
T ss_pred -CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEeccccccc----------------------------------------
Confidence 78999999 68999999999999999999865431110
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
......+ .+|...|.+++|+|++..|+++ .|++|++||++ .++.... +.+|...|.
T Consensus 144 --------------~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~-~~~~~~~-------~~~h~~~v~ 200 (354)
T 2pbi_B 144 --------------AAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVE-SGQLLQS-------FHGHGADVL 200 (354)
T ss_dssp --------------GGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEE-------EECCSSCEE
T ss_pred --------------cccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCeEEEE-------EcCCCCCeE
Confidence 0111222 6899999999999999999999 99999999999 5555554 678999999
Q ss_pred EEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933 268 SAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 344 (497)
Q Consensus 268 ~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 344 (497)
+++|+|+ + ++|++++.||.|++||+++++.. ..+. +|...|++++|+|++.+|++++ |+
T Consensus 201 ~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~~----~~~~-------------~h~~~v~~v~~~p~~~~l~s~s~D~ 262 (354)
T 2pbi_B 201 CLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQCV----QAFE-------------THESDVNSVRYYPSGDAFASGSDDA 262 (354)
T ss_dssp EEEECCCSSC-CEEEEEETTSCEEEEETTTCCEE----EEEC-------------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcEE----EEec-------------CCCCCeEEEEEeCCCCEEEEEeCCC
Confidence 9999874 5 79999999999999999987644 3333 3568899999999999999986 59
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
.|++||++. .+.+..+..+... ..+.+++|+|++++|++|+.|+.|++||+.+++.+ ..+.+|..
T Consensus 263 ~v~lwd~~~-~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~~h~~ 327 (354)
T 2pbi_B 263 TCRLYDLRA-DREVAIYSKESII-------------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV-SILFGHEN 327 (354)
T ss_dssp CEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE-EEECCCSS
T ss_pred eEEEEECCC-CcEEEEEcCCCcc-------------cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE-EEEECCCC
Confidence 999999986 6666555443321 12368999999999999999999999999888554 78899999
Q ss_pred ceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+|.+++|+| ++.+ |++|+.|+. ++|
T Consensus 328 ~v~~l~~sp--dg~~-----l~sgs~D~~v~vW 353 (354)
T 2pbi_B 328 RVSTLRVSP--DGTA-----FCSGSWDHTLRVW 353 (354)
T ss_dssp CEEEEEECT--TSSC-----EEEEETTSEEEEE
T ss_pred cEEEEEECC--CCCE-----EEEEcCCCCEEec
Confidence 999999999 6777 999999999 988
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-40 Score=320.61 Aligned_cols=283 Identities=15% Similarity=0.242 Sum_probs=244.5
Q ss_pred ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933 89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 168 (497)
Q Consensus 89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
....+.+|. ++|++++| +|++.+|++++.|++|++||+.+++..
T Consensus 100 ~~~~l~gh~------------~~V~~~~~--~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------- 143 (410)
T 1vyh_C 100 EKYALSGHR------------SPVTRVIF--HPVFSVMVSASEDATIKVWDYETGDFE---------------------- 143 (410)
T ss_dssp CSCEEECCS------------SCEEEEEE--CSSSSEEEEEESSSCEEEEETTTCCCC----------------------
T ss_pred ceEeecccC------------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE----------------------
Confidence 345677888 99999999 688999999999999999999876632
Q ss_pred ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce
Q 010933 169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 247 (497)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 247 (497)
..+ .+|...|.+++|+|++++|++| .|+.|++||+. ..+
T Consensus 144 --------------------------------------~~l-~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~ 183 (410)
T 1vyh_C 144 --------------------------------------RTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFE 183 (410)
T ss_dssp --------------------------------------EEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSC
T ss_pred --------------------------------------EEE-eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCc
Confidence 222 7899999999999999999999 99999999998 555
Q ss_pred eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933 248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 327 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 327 (497)
.... +.+|...|.+++|+|++ .+|++++.|+.|++||++++... ..+. +|...+.
T Consensus 184 ~~~~-------~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~----~~~~-------------~h~~~v~ 238 (410)
T 1vyh_C 184 CIRT-------MHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KTFT-------------GHREWVR 238 (410)
T ss_dssp EEEC-------CCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCEE
T ss_pred eeEE-------EcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEe-------------CCCccEE
Confidence 5543 78899999999999999 99999999999999999987644 3333 3567899
Q ss_pred EEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC---------------
Q 010933 328 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--------------- 391 (497)
Q Consensus 328 ~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------- 391 (497)
++.++|++.+|++|+ |+.|++||+.+ +++...+.+|...+ .+++|+|+
T Consensus 239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 239 MVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVV---------------ECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECCSCGGGGGGGCCSCC--
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecCCCceE---------------EEEEEcCcccccchhhhcccccc
Confidence 999999999999986 59999999986 78888888888764 68999986
Q ss_pred -----CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcc
Q 010933 392 -----GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHE 463 (497)
Q Consensus 392 -----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~ 463 (497)
+.+|++|+.|+.|++||+.++.. ...+.+|...|++++|++ ++.+ +++|+.|+. ++| ..++...
T Consensus 303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~--~g~~-----l~s~s~D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHS--GGKF-----ILSCADDKTLRVWDYKNKRCMK 374 (410)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECS--SSSC-----EEEEETTTEEEEECCTTSCCCE
T ss_pred ccCCCCCEEEEEeCCCeEEEEECCCCce-EEEEECCCCcEEEEEEcC--CCCE-----EEEEeCCCeEEEEECCCCceEE
Confidence 67899999999999999998854 488999999999999998 6666 999999999 999 3445566
Q ss_pred cccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 464 LSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 464 ~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
.+.+|...|++++|+|++++||+|+.| .+.+|+
T Consensus 375 ~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 677899999999999999999999954 599996
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.3e-40 Score=304.06 Aligned_cols=283 Identities=22% Similarity=0.394 Sum_probs=230.9
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+|+|++||+|+.||.|++|+..+++. ...+.+|.
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-----------------------~~~~~~h~------------ 65 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-----------------------EKTISGHK------------ 65 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS------------
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-----------------------chhhccCC------------
Confidence 5999999999999999999999999999999877643 56678898
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| +|++++|++++.|+.|++||+.+++..
T Consensus 66 ~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~------------------------------------------- 100 (312)
T 4ery_A 66 LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCL------------------------------------------- 100 (312)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEE-------------------------------------------
T ss_pred CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEE-------------------------------------------
Confidence 88999999 689999999999999999999876532
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
..+ .+|...|.+++|+|+++.|++| .|+.|++||++ .++.... +..|...|.+
T Consensus 101 -----------------~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-------~~~~~~~v~~ 154 (312)
T 4ery_A 101 -----------------KTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKT-------LPAHSDPVSA 154 (312)
T ss_dssp -----------------EEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCSSCEEE
T ss_pred -----------------EEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEE-------ecCCCCcEEE
Confidence 222 6889999999999999999999 99999999998 4555544 6789999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+|++ .+|++++.||.|++||+++++.. ..+.. .+...+..++|+|++++|++++ ++.|+
T Consensus 155 ~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 155 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLID------------DDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEECC------------SSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred EEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEec------------cCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 9999999 99999999999999999987643 22211 1235789999999999999986 59999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc-CCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcce
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 426 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 426 (497)
+||+++ ++.+..+.+|...... ....++ +++++|++|+.||.|++||+.+++.+ ..+.+
T Consensus 218 iwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~~----- 277 (312)
T 4ery_A 218 LWDYSK-GKCLKTYTGHKNEKYC-------------IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV-QKLQG----- 277 (312)
T ss_dssp EEETTT-TEEEEEECSSCCSSSC-------------CCEEEECSSSCEEEECCTTSCEEEEETTTCCEE-EEECC-----
T ss_pred EEECCC-CcEEEEEEecCCceEE-------------EEEEEEeCCCcEEEEECCCCEEEEEECCCchhh-hhhhc-----
Confidence 999986 8888888887654311 123444 67899999999999999999887432 34433
Q ss_pred eeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEe---CCceEEEe
Q 010933 427 RKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN---GNSLFFHY 496 (497)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~---~~~~~i~~ 496 (497)
|...|.+++|+|++++||+++ ++.+.+|.
T Consensus 278 -----------------------------------------h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 278 -----------------------------------------HTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp -----------------------------------------CSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred -----------------------------------------cCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 344677788888888888776 45588886
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=307.64 Aligned_cols=286 Identities=16% Similarity=0.189 Sum_probs=238.9
Q ss_pred cccccccCcccccccccccccceeEEEEEec--CCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAA--PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s--~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
.+.+++|+ +.|++++|+|. +++.+|++|+.|++|++|++..+...
T Consensus 25 ~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~--------------------- 71 (321)
T 3ow8_A 25 FKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD--------------------- 71 (321)
T ss_dssp EEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------------
T ss_pred eeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------------
Confidence 45567898 99999999642 35679999999999999998765421
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 246 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~ 246 (497)
+... +.+|...|.+++|++++..++++ .|+.|++||+. .+
T Consensus 72 -------------------------------------~~~~-l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~-~~ 112 (321)
T 3ow8_A 72 -------------------------------------LQWS-LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE-NG 112 (321)
T ss_dssp -------------------------------------EEEE-ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TT
T ss_pred -------------------------------------eeee-eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC-CC
Confidence 1112 27999999999999999999999 99999999999 55
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 326 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 326 (497)
+.... +..+...+.+++|+|++ .+|++++.|+.|++||+++++.. ..+. .|...+
T Consensus 113 ~~~~~-------~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~----~~~~-------------~~~~~v 167 (321)
T 3ow8_A 113 KQIKS-------IDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE----YSLD-------------TRGKFI 167 (321)
T ss_dssp EEEEE-------EECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE----EEEE-------------CSSSCE
T ss_pred CEEEE-------EeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee----EEec-------------CCCceE
Confidence 55554 45677888999999999 99999999999999999987543 2222 234679
Q ss_pred cEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933 327 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 405 (497)
Q Consensus 327 ~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 405 (497)
.+++|+|+|++|++|+ |+.|++||+++ ++++..+.+|...+ ++++|+|++++|++|+.|+.|+
T Consensus 168 ~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 168 LSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPI---------------RSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCC---------------CEEEECTTSCEEEEECTTSCEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCce---------------eEEEEcCCCCEEEEEcCCCeEE
Confidence 9999999999999986 59999999986 88899999888764 6899999999999999999999
Q ss_pred EEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCC
Q 010933 406 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN 482 (497)
Q Consensus 406 vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~ 482 (497)
+||+++++. ...+.+|...|.+++|+| ++.. |++++.|+. ++| ..+.....+.+|...|.+++|+|+++
T Consensus 232 iwd~~~~~~-~~~~~~h~~~v~~~~~sp--~~~~-----l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~ 303 (321)
T 3ow8_A 232 IYDVQHANL-AGTLSGHASWVLNVAFCP--DDTH-----FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS 303 (321)
T ss_dssp EEETTTCCE-EEEECCCSSCEEEEEECT--TSSE-----EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred EEECCCcce-eEEEcCCCCceEEEEECC--CCCE-----EEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 999998754 488999999999999999 5666 999999999 999 34445556778999999999999999
Q ss_pred EEEEEeCC-ceEEEe
Q 010933 483 LIACANGN-SLFFHY 496 (497)
Q Consensus 483 ~la~~~~~-~~~i~~ 496 (497)
+|++++.| .+++|+
T Consensus 304 ~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 304 KIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEEEETTCCEEEEE
T ss_pred EEEEEeCCCeEEEEe
Confidence 99999955 599997
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.8e-40 Score=303.62 Aligned_cols=291 Identities=14% Similarity=0.238 Sum_probs=232.0
Q ss_pred cCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+|.+.|++++|+|++ ++|++|+.|++|++|++.+... .....+..+.+|.
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~------------------~~~~~~~~~~~h~----------- 65 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ------------------KFGVPVRSFKGHS----------- 65 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT------------------EEEEEEEEEECCS-----------
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc------------------cccccceEEeCCc-----------
Confidence 599999999999965 8999999999999999875321 0113466788999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++| ++++.+|++++.|++|++||+.+++..
T Consensus 66 -~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~------------------------------------------ 100 (319)
T 3frx_A 66 -HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETY------------------------------------------ 100 (319)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEE------------------------------------------
T ss_pred -ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCee------------------------------------------
Confidence 89999999 689999999999999999999877632
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
..+ .+|...|.+++|+|+++.|++| .|+.|++||++ .. .... +.+|...|.
T Consensus 101 ------------------~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~-~~~~-------~~~h~~~v~ 152 (319)
T 3frx_A 101 ------------------QRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQ-CLAT-------LLGHNDWVS 152 (319)
T ss_dssp ------------------EEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SC-EEEE-------ECCCSSCEE
T ss_pred ------------------EEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CC-eEEE-------EeccCCcEE
Confidence 222 6899999999999999999999 99999999997 33 3333 678999999
Q ss_pred EEEEeCCC-----CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933 268 SAEFHPIY-----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 342 (497)
Q Consensus 268 ~~~~~~~~-----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 342 (497)
++++.|.+ ...|++++.|+.|++||+++++.. ..+ .+|...|.+++|+|+|++|++++
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~-------------~~h~~~v~~~~~sp~g~~l~s~~ 215 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE----ADF-------------IGHNSNINTLTASPDGTLIASAG 215 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEEE----EEE-------------CCCCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh----eee-------------cCCCCcEEEEEEcCCCCEEEEEe
Confidence 99999853 148999999999999999876533 222 34678999999999999999986
Q ss_pred -cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933 343 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 421 (497)
Q Consensus 343 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 421 (497)
|+.|++||+.. ++.+..+..+.. +.+++|+|++.+|++++.+ .+++|+++.+... ..+..
T Consensus 216 ~dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~-~~~~~ 276 (319)
T 3frx_A 216 KDGEIMLWNLAA-KKAMYTLSAQDE----------------VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLV-DDLRP 276 (319)
T ss_dssp TTCEEEEEETTT-TEEEEEEECCSC----------------EEEEEECSSSSEEEEEETT-EEEEEEETTEEEE-EEECC
T ss_pred CCCeEEEEECCC-CcEEEEecCCCc----------------EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeee-eccCc
Confidence 59999999986 788888876543 2689999999999988765 5999999865221 12211
Q ss_pred cCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 422 GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 422 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
+ .......+...+.+++|+|||++|++|+.| .+++|+
T Consensus 277 ~--------------------------------------~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 277 E--------------------------------------FAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp C--------------------------------------CTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred c--------------------------------------ccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 1 011122345578899999999999999955 599996
No 17
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.9e-40 Score=359.04 Aligned_cols=383 Identities=13% Similarity=0.126 Sum_probs=275.0
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++. +..+.+|.
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------------------~~~~~~h~----------- 657 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------------------LLDIKAHE----------- 657 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS-----------
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEeccCC-----------
Confidence 36999999999999999999999999999999988743 67788999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCC--Cccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHLEW 186 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 186 (497)
+.|.+++| +|++++|++++.|+.|++||+.+++....... +.+.+....+.+ +..++++++.
T Consensus 658 -~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~l~sg~~ 721 (1249)
T 3sfz_A 658 -DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVHTYDE-------------HSEQVNCCHFTNKSNHLLLATGSN 721 (1249)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-------------CSSCEEEEEECSSSSCCEEEEEET
T ss_pred -CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEEcC-------------CCCcEEEEEEecCCCceEEEEEeC
Confidence 89999999 68999999999999999999998876553322 223333444444 3344555554
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCC---------
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP--------- 256 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--------- 256 (497)
++.+++||+... +++..+ .+|...|.+++|+|+++.++++ .||.|++||+.. +.....+..+.
T Consensus 722 --d~~v~vwd~~~~---~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 794 (1249)
T 3sfz_A 722 --DFFLKLWDLNQK---ECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINVKRFFLSSEDPP 794 (1249)
T ss_dssp --TSCEEEEETTSS---SEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG-TEEEEEEECCCCC-------
T ss_pred --CCeEEEEECCCc---chhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC-CcccceecccccccccCCcc
Confidence 889999999853 566665 7999999999999999999999 999999999984 33322221110
Q ss_pred ---------------------------------------CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCc
Q 010933 257 ---------------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 297 (497)
Q Consensus 257 ---------------------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 297 (497)
....+|...|.+++|+|++ .++++++.||.|++||+.++.
T Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~ 873 (1249)
T 3sfz_A 795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRL 873 (1249)
T ss_dssp -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTE
T ss_pred ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc
Confidence 0012678899999999999 999999999999999998875
Q ss_pred ccccccceecccccc-------cCCc-----------ccc----------------------------------------
Q 010933 298 LCDHSARILRDAAES-------HGSK-----------SFF---------------------------------------- 319 (497)
Q Consensus 298 ~~~~~~~~~~~~~~~-------~~~~-----------~~~---------------------------------------- 319 (497)
.. ..+..|... +... ..+
T Consensus 874 ~~----~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1249)
T 3sfz_A 874 KV----ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949 (1249)
T ss_dssp EE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEE
T ss_pred ee----eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEE
Confidence 43 222221100 0000 000
Q ss_pred --------ccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933 320 --------TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 390 (497)
Q Consensus 320 --------~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 390 (497)
..+...+.+++|+|+++++++|+. |.|++||+.+ ++.+..+.+|...+ ++++|+|
T Consensus 950 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v---------------~~l~~s~ 1013 (1249)
T 3sfz_A 950 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAV---------------RHIQFTA 1013 (1249)
T ss_dssp EESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCC---------------CCEEECS
T ss_pred ecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-CceeeecccCCCce---------------EEEEECC
Confidence 001123444455555555555432 5555555543 44444445554433 5777888
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCC---------------------------------------cceEEEeccCcceeeeEe
Q 010933 391 DGLHFATGSYSNLLRIFSHGVGS---------------------------------------AGGITVEAGKNENRKPIL 431 (497)
Q Consensus 391 ~~~~l~s~~~dg~i~vw~~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~ 431 (497)
++++|++++.||.|++||+.+++ .....+.+|...+.++++
T Consensus 1014 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~ 1093 (1249)
T 3sfz_A 1014 DGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093 (1249)
T ss_dssp SSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEE
T ss_pred CCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEE
Confidence 87777777777777777765432 123556778888999999
Q ss_pred ecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 432 QAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
+| ++.. +++++.|+. ++| ..+.......+|...|++++|+|++++||+++.| .+++|+
T Consensus 1094 s~--d~~~-----l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1094 SS--DATK-----FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp CS--SSSS-----CEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred CC--CCCE-----EEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 88 6666 999999999 999 4455666778899999999999999999999955 599997
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.2e-40 Score=302.10 Aligned_cols=285 Identities=15% Similarity=0.148 Sum_probs=235.4
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
+..++|.+|. +.|.+++| +|++++|++++.||.|++||+.++...
T Consensus 4 ~~~~~~~~h~------------~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~--------------------- 48 (304)
T 2ynn_A 4 DIKKTFSNRS------------DRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQVEV--------------------- 48 (304)
T ss_dssp CCEEEEEEEC------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEE---------------------
T ss_pred eeEEeecCCC------------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcee---------------------
Confidence 4466788998 89999999 689999999999999999999876532
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 246 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~ 246 (497)
+.+ ..|...|.+++|+|+++.|++| .|+.|++||++ .+
T Consensus 49 ---------------------------------------~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~-~~ 87 (304)
T 2ynn_A 49 ---------------------------------------RSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TG 87 (304)
T ss_dssp ---------------------------------------EEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-TC
T ss_pred ---------------------------------------EEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC-CC
Confidence 222 6788899999999999999999 99999999999 44
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 326 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 326 (497)
+.... +.+|...|.+++|+|++ .+|++++.|+.|++||++++.... ..+ .+|...|
T Consensus 88 ~~~~~-------~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~---~~~-------------~~h~~~v 143 (304)
T 2ynn_A 88 EKVVD-------FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALE---QTF-------------EGHEHFV 143 (304)
T ss_dssp CEEEE-------EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEE---EEE-------------CCCCSCE
T ss_pred cEEEE-------EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchh---hhh-------------cccCCcE
Confidence 45443 67899999999999999 999999999999999998763221 222 3467889
Q ss_pred cEEEEee-CCCEEEEEe-cCeEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEcC--CCCEEEEEeCC
Q 010933 327 SDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYS 401 (497)
Q Consensus 327 ~~~~~s~-~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~s~~~d 401 (497)
.+++|+| ++.+|++|+ |+.|++||++. ..+...+. ++...+ ..+.|+| ++++|++|+.|
T Consensus 144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGV---------------NYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTCE---------------EEEEECCSTTCCEEEEEETT
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCcE---------------EEEEEEEcCCCCEEEEEcCC
Confidence 9999999 678899885 59999999986 55544443 333332 4678876 78899999999
Q ss_pred CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEe
Q 010933 402 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWH 478 (497)
Q Consensus 402 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~ 478 (497)
+.|++||+++++. ...+.+|...|..++|+| ++.. |++|+.|+. ++| ...+....+..+...+.+++|+
T Consensus 208 ~~i~iWd~~~~~~-~~~~~~h~~~v~~~~~~p--~~~~-----l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 279 (304)
T 2ynn_A 208 LTIKIWDYQTKSC-VATLEGHMSNVSFAVFHP--TLPI-----IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH 279 (304)
T ss_dssp SEEEEEETTTTEE-EEEEECCSSCEEEEEECS--SSSE-----EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEEC
T ss_pred CeEEEEeCCCCcc-ceeeCCCCCCEEEEEECC--CCCE-----EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEEC
Confidence 9999999998744 488999999999999999 5555 999999999 999 3445555666788899999999
Q ss_pred cCCC--EEEEEeCCceEEEe
Q 010933 479 PTTN--LIACANGNSLFFHY 496 (497)
Q Consensus 479 p~~~--~la~~~~~~~~i~~ 496 (497)
|++. ++|+|+++++.+|.
T Consensus 280 ~~~~~~~~asg~~~g~~~~~ 299 (304)
T 2ynn_A 280 PTGRKNYIASGFDNGFTVLS 299 (304)
T ss_dssp TTCGGGCEEEEETTEEEEEE
T ss_pred CCCCceEEEEecCCceEEEE
Confidence 9985 68999999999886
No 19
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-40 Score=308.75 Aligned_cols=289 Identities=16% Similarity=0.266 Sum_probs=228.5
Q ss_pred cCCc-ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc-cccccccCcccccccccc
Q 010933 30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY-KTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 30 ~h~~-~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~~~~~~~~~ 107 (497)
.|.+ .|.+++|+|+|++||+|+.|+.|+|||+.++.. .. .....+|.
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~---------------------~~~~~~~~~h~---------- 61 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW---------------------ICKSVLSEGHQ---------- 61 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE---------------------EEEEEECSSCS----------
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc---------------------eeeeeeccccC----------
Confidence 4776 999999999999999999999999999987632 11 12236788
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..|.+++| +|++++|++++.|+++++|++..+...
T Consensus 62 --~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~----------------------------------------- 96 (345)
T 3fm0_A 62 --RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFE----------------------------------------- 96 (345)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EE-----------------------------------------
T ss_pred --CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeE-----------------------------------------
Confidence 88999999 689999999999999999998765421
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce--eeEEeecCCCccCCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~ 264 (497)
++..+ .+|...|.+++|+|++++|++| .|+.|++||++.... .... +.+|..
T Consensus 97 -----------------~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~h~~ 151 (345)
T 3fm0_A 97 -----------------CVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-------LNSHTQ 151 (345)
T ss_dssp -----------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE-------ECCCCS
T ss_pred -----------------EEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE-------ecCcCC
Confidence 22333 7999999999999999999999 999999999984332 2222 678999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 343 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~ 343 (497)
.|.+++|+|++ .+|++++.|+.|++||+++++... ... +.+|...|.+++|+|+|++|++++ |
T Consensus 152 ~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~--~~~-------------~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 152 DVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC--CAT-------------LEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp CEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEE--EEE-------------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE--EEE-------------ecCCCCceEEEEECCCCCEEEEEeCC
Confidence 99999999999 999999999999999998754210 012 345678999999999999999986 5
Q ss_pred CeEEEEecCCCCc--------------eeeeeee-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 344 MNLKLWDIRMDST--------------PVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 344 ~~i~lwd~~~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
+.|++||....+. ++..+.+ |... +++++|+|++..|++++.|+.|++|+
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT---------------IYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC---------------EEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc---------------EEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 9999999753221 1222222 3222 36999999999999999999999999
Q ss_pred cCCCCcc--------eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 409 HGVGSAG--------GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 409 ~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
...+... .....+|...|++++|+|. ...+ |++|+.|+. ++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~-----laS~s~Dg~v~~W 331 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK-EPGL-----LASCSDDGEVAFW 331 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSS-STTE-----EEEEETTSCEEEE
T ss_pred eCCCCCcceeeEEEEeeecccccCcEeEeEEeCC-CceE-----EEEcCCCCcEEEE
Confidence 8765321 1223589999999999994 2234 899999999 999
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-40 Score=314.99 Aligned_cols=281 Identities=19% Similarity=0.344 Sum_probs=215.0
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcc------cccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE------FDYL 103 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------~~~~ 103 (497)
.|.+.|+|++|+|||++||+|+ ++.++||++.+++. +..+..|... +...
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~-----------------------~~~l~~~~~~~~~~~~~~~~ 117 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-----------------------VARLSDDSAANKDPENLNTS 117 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE-----------------------EEEECC--------------
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE-----------------------EEEecCcccccccccccccc
Confidence 5999999999999999999987 67999999988753 2223222200 0000
Q ss_pred cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
........|.+++| +|++++|++++.|+.|++||+.+++..
T Consensus 118 ~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~------------------------------------- 158 (393)
T 1erj_A 118 SSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIV------------------------------------- 158 (393)
T ss_dssp ---CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEE-------------------------------------
T ss_pred ccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEE-------------------------------------
Confidence 00011145999999 789999999999999999999876532
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
..+ .+|...|.+++|+|+++.|++| .|+.|++||++ .++....+ .+
T Consensus 159 -----------------------~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~-~~~~~~~~--------~~ 205 (393)
T 1erj_A 159 -----------------------MIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTL--------SI 205 (393)
T ss_dssp -----------------------EEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE--------EC
T ss_pred -----------------------EEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-CCeeEEEE--------Ec
Confidence 222 7899999999999999999999 99999999998 45544432 35
Q ss_pred CCCeEEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 263 TEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 263 ~~~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
...+.+++|+| ++ .+|++++.|+.|++||+++++.. ..+.. ......+|...|.+++|+|+|++|++|
T Consensus 206 ~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~------~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 206 EDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDS------ENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp SSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeecc------cccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 67899999999 77 99999999999999999987644 22211 011124577899999999999999998
Q ss_pred e-cCeEEEEecCCC-----------CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933 342 D-YMNLKLWDIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 342 ~-~~~i~lwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
+ |+.|++||++.. +.+...+.+|...+ .+++|+|++++|++|+.|+.|++||+
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEETTSEEEEEET
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcE---------------EEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 6 599999999752 22345566676643 68999999999999999999999999
Q ss_pred CCCCcceEEEeccCcceeeeEeec
Q 010933 410 GVGSAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~~~~~~~ 433 (497)
.+++.+ ..+.+|...|.++++++
T Consensus 340 ~~~~~~-~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 340 KSGNPL-LMLQGHRNSVISVAVAN 362 (393)
T ss_dssp TTCCEE-EEEECCSSCEEEEEECS
T ss_pred CCCeEE-EEECCCCCCEEEEEecC
Confidence 988554 78889999999988876
No 21
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-40 Score=344.00 Aligned_cols=386 Identities=13% Similarity=0.096 Sum_probs=277.8
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.+.|++++|+|+|++||+|+.||.|+||+..+.+. ...+ .|.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-----------------------~~~~-~~~----------- 58 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-----------------------VIKL-EDR----------- 58 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-----------------------EEEC-SSC-----------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-----------------------EEEc-CCC-----------
Confidence 46899999999999999999999999999999866432 2222 355
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.+|.+++|+ | +++|++++.|++|++||+.+++...... +.+.+....+.++..+++.+..
T Consensus 59 -~~V~~l~fs--p-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--------------~~~~V~~v~~sp~g~~l~sgs~-- 118 (902)
T 2oaj_A 59 -SAIKEMRFV--K-GIYLVVINAKDTVYVLSLYSQKVLTTVF--------------VPGKITSIDTDASLDWMLIGLQ-- 118 (902)
T ss_dssp -CCEEEEEEE--T-TTEEEEEETTCEEEEEETTTCSEEEEEE--------------CSSCEEEEECCTTCSEEEEEET--
T ss_pred -CCEEEEEEc--C-CCEEEEEECcCeEEEEECCCCcEEEEEc--------------CCCCEEEEEECCCCCEEEEEcC--
Confidence 789999995 5 6799999999999999999877543321 2244566667788888888875
Q ss_pred CcceEEEeecCCccceeee-------eeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecC----
Q 010933 189 NMATKIANVGNSVHARCQK-------VYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK---- 255 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~---- 255 (497)
++.+++||+.......... ..+.+|...|.+++|+|+ +..+++| .|+.| +||++ .++....+...
T Consensus 119 dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~~~~~~~~g 196 (902)
T 2oaj_A 119 NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQSFIYELPPF 196 (902)
T ss_dssp TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEEECCCBCTT
T ss_pred CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEEEecccCCc
Confidence 8999999998643210000 122689999999999996 5688888 99999 99999 55555543211
Q ss_pred -C------CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc----------------------c--cc
Q 010933 256 -P------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH----------------------S--AR 304 (497)
Q Consensus 256 -~------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~----------------------~--~~ 304 (497)
+ .....|...|.+++|+|+| .+|++++.||.|++||+++++.+.. . +.
T Consensus 197 ~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~ 275 (902)
T 2oaj_A 197 APGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKIS 275 (902)
T ss_dssp CCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEE
T ss_pred CCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCee
Confidence 0 0123456889999999999 9999999999999999987653210 0 00
Q ss_pred --ee-------------cc-ccc------------c--------------------------------------------
Q 010933 305 --IL-------------RD-AAE------------S-------------------------------------------- 312 (497)
Q Consensus 305 --~~-------------~~-~~~------------~-------------------------------------------- 312 (497)
.| .+ ... .
T Consensus 276 ~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~s 355 (902)
T 2oaj_A 276 KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQS 355 (902)
T ss_dssp EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSC
T ss_pred EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCC
Confidence 00 00 000 0
Q ss_pred ------cCC---------c--c------------------c----------------------------------ccccc
Q 010933 313 ------HGS---------K--S------------------F----------------------------------FTEII 323 (497)
Q Consensus 313 ------~~~---------~--~------------------~----------------------------------~~~~~ 323 (497)
.+. . . . +.+|.
T Consensus 356 p~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~ 435 (902)
T 2oaj_A 356 PYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGV 435 (902)
T ss_dssp SHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSB
T ss_pred CCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCc
Confidence 000 0 0 0 01112
Q ss_pred ccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCcee--eeee---------ecccccccccccCCCCCccceeEEEEcCC
Q 010933 324 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV--ATFK---------IHEHLRPKLCDLYNNDSIFDKFECSVSGD 391 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 391 (497)
..+..++|+|++++|++|+ |++|++||+.. +... ..+. +|... |++++|+||
T Consensus 436 ~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~~~~~~~h~~~---------------V~svafspd 499 (902)
T 2oaj_A 436 RTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLSRTLNKAKELA---------------VDKISFAAE 499 (902)
T ss_dssp CCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHHHHTTCSSSCC---------------EEEEEEETT
T ss_pred CCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeechhhcCCCCCCc---------------eeEEEecCC
Confidence 2233345578899999985 59999999986 4321 1111 34333 379999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCc--------------------------------------------ceEEEeccCccee
Q 010933 392 GLHFATGSYSNLLRIFSHGVGSA--------------------------------------------GGITVEAGKNENR 427 (497)
Q Consensus 392 ~~~l~s~~~dg~i~vw~~~~~~~--------------------------------------------~~~~~~~~~~~v~ 427 (497)
+++||+|+.||+|+||++.+++. ....+.+|.++|+
T Consensus 500 g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~ 579 (902)
T 2oaj_A 500 TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS 579 (902)
T ss_dssp TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE
T ss_pred CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE
Confidence 99999999999999999987631 2467889999999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eecCCCCCc-------cccc-ccCCCeEEEEEe-----cCC---CEEEEEeCC
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH-------ELSY-NLSSKLLHLAWH-----PTT---NLIACANGN 490 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~-------~~~~-~~~~~i~~l~~~-----p~~---~~la~~~~~ 490 (497)
+++|+| ++ + ||+|+.|+. ++|...... .... +|...|++|+|+ ||| .+|++|+.|
T Consensus 580 svafSp--dG-~-----lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D 651 (902)
T 2oaj_A 580 AINNSN--IG-F-----VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM 651 (902)
T ss_dssp EEEECB--TS-E-----EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred EEEecC--Cc-E-----EEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence 999998 66 6 999999999 999443321 1233 788999999999 886 799999954
Q ss_pred -ceEEEe
Q 010933 491 -SLFFHY 496 (497)
Q Consensus 491 -~~~i~~ 496 (497)
.+++|.
T Consensus 652 ~tv~~wd 658 (902)
T 2oaj_A 652 GEVITYK 658 (902)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 599996
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.7e-40 Score=314.93 Aligned_cols=301 Identities=15% Similarity=0.197 Sum_probs=238.9
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.+.|++++|+|+|++||+|+.||+|+|||..+++. ...+.+|.
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-----------------------~~~~~~h~----------- 108 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-----------------------THAIKLHC----------- 108 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----------------------EEEEECCC-----------
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------------ceEEecCC-----------
Confidence 36999999999999999999999999999999987643 66788898
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++| +|++++|++++.|+.+++|++........
T Consensus 109 -~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~---------------------------------------- 145 (380)
T 3iz6_a 109 -PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDG---------------------------------------- 145 (380)
T ss_dssp -TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCC----------------------------------------
T ss_pred -CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccC----------------------------------------
Confidence 88999999 78999999999999999999875431100
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
.....+. +.+|...|.++.|+|+ +..|++| .|++|++||++ .++....+.. ....+|...|
T Consensus 146 -------------~~~~~~~-~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~--~~~~~h~~~v 208 (380)
T 3iz6_a 146 -------------NMPVSRV-LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRISIFGS--EFPSGHTADV 208 (380)
T ss_dssp -------------SSTTCCB-CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT-TCCEEEEECC--CSSSSCCSCE
T ss_pred -------------Cccceee-ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC-CCcEEEEeec--ccCCCCccCe
Confidence 0001111 2799999999999996 4568888 99999999999 4555544211 1236799999
Q ss_pred EEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933 267 TSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 344 (497)
Q Consensus 267 ~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 344 (497)
.+++|++ ++ ++|++|+.|+.|++||++..... ...+ .+|...|++++|+|++++|++|+ |+
T Consensus 209 ~~~~~~~~~~-~~l~sgs~D~~v~~wd~~~~~~~---~~~~-------------~~h~~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 209 LSLSINSLNA-NMFISGSCDTTVRLWDLRITSRA---VRTY-------------HGHEGDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp EEEEECSSSC-CEEEEEETTSCEEEEETTTTCCC---CEEE-------------CCCSSCCCEEEECTTSSEEEEECSSS
T ss_pred EEEEeecCCC-CEEEEEECCCeEEEEECCCCCcc---eEEE-------------CCcCCCeEEEEEecCCCeEEEEcCCC
Confidence 9999987 55 89999999999999999853211 1333 44678999999999999999986 59
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE----e
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV----E 420 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~----~ 420 (497)
.|++||+++ ++.+..+..+..... .....+++++|+|+|++|++|+.||.|++||+.+++.. ..+ .
T Consensus 272 ~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~ 341 (380)
T 3iz6_a 272 TCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV-LNLGTLQN 341 (380)
T ss_dssp CEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE-EEECCSCS
T ss_pred eEEEEECCC-CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE-EEEecccC
Confidence 999999997 777777765533210 01111368999999999999999999999999887554 444 6
Q ss_pred ccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
+|.+.|.+++|+| ++.. |++|+.|+. ++|.
T Consensus 342 ~h~~~v~~l~~s~--dg~~-----l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 342 SHEGRISCLGLSS--DGSA-----LCTGSWDKNLKIWA 372 (380)
T ss_dssp SCCCCCCEEEECS--SSSE-----EEEECTTSCEEEEE
T ss_pred CCCCceEEEEECC--CCCE-----EEEeeCCCCEEEEe
Confidence 8999999999999 6777 999999999 9994
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.6e-39 Score=301.66 Aligned_cols=287 Identities=15% Similarity=0.155 Sum_probs=237.9
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
+...++++|. +.|++++| +|++++|++++.|++|++||+.+++...
T Consensus 46 ~~~~~l~gH~------------~~v~~~~~--s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-------------------- 91 (340)
T 1got_B 46 RTRRTLRGHL------------AKIYAMHW--GTDSRLLLSASQDGKLIIWDSYTTNKVH-------------------- 91 (340)
T ss_dssp CEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEE--------------------
T ss_pred hhheeecCCC------------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCcce--------------------
Confidence 4567788999 89999999 6899999999999999999987765322
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 246 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~ 246 (497)
.+ ..|...|.+++|+|++++|++| .|+.|++|++....
T Consensus 92 ----------------------------------------~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 92 ----------------------------------------AI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp ----------------------------------------EE-ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred ----------------------------------------Ee-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 22 5788899999999999999999 99999999998433
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 326 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 326 (497)
...... ..+.+|...|.++.|++++ .+++++.|+.|++||+++++.. ..+. +|...|
T Consensus 131 ~~~~~~----~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~----~~~~-------------~h~~~v 187 (340)
T 1got_B 131 GNVRVS----RELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT----TTFT-------------GHTGDV 187 (340)
T ss_dssp BSCEEE----EEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCE
T ss_pred CcceeE----EEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE----EEEc-------------CCCCce
Confidence 211110 1267899999999999986 5899999999999999987644 3333 466889
Q ss_pred cEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933 327 SDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 405 (497)
Q Consensus 327 ~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 405 (497)
.+++|+|+++++++|+ |+.|++||+++ ++++..+.+|...+ ++++|+|++++|++|+.||.|+
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESDI---------------NAICFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCCE---------------EEEEEcCCCCEEEEEcCCCcEE
Confidence 9999999999999986 59999999986 88889999888764 7999999999999999999999
Q ss_pred EEEcCCCCcceEEEe--ccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecC
Q 010933 406 IFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPT 480 (497)
Q Consensus 406 vw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~ 480 (497)
+||+.+++.+ ..+. .+...+.+++|+| ++.+ +++|+.|+. ++| ........+.+|...|.+++|+|+
T Consensus 252 iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~--~g~~-----l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~d 323 (340)
T 1got_B 252 LFDLRADQEL-MTYSHDNIICGITSVSFSK--SGRL-----LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp EEETTTTEEE-EEECCTTCCSCEEEEEECT--TSSE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EEECCCCcEE-EEEccCCcccceEEEEECC--CCCE-----EEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCC
Confidence 9999987443 3333 2335799999999 6676 999999999 999 344455667789999999999999
Q ss_pred CCEEEEEeCC-ceEEEe
Q 010933 481 TNLIACANGN-SLFFHY 496 (497)
Q Consensus 481 ~~~la~~~~~-~~~i~~ 496 (497)
+.+||+|+.| .+++|+
T Consensus 324 g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 324 GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCccEEecC
Confidence 9999999955 599995
No 24
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-41 Score=322.46 Aligned_cols=338 Identities=11% Similarity=0.178 Sum_probs=262.5
Q ss_pred ccCCcceEEEEEcCCCC-EEEEe----------ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccC
Q 010933 29 LQDVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHE 97 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~-~lasg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 97 (497)
+.+...|.+++|+|+|+ +||+| +.|+.|+|||+.++.. .+.+..+ .|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~--------------------~~~~~~~-~~~ 67 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS--------------------EKPIASL-QVD 67 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG--------------------CSCSCCC-CCS
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC--------------------CcEEEEE-ecC
Confidence 44667899999999997 99999 8899999999987642 0112222 466
Q ss_pred cccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCC
Q 010933 98 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 177 (497)
Q Consensus 98 ~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (497)
..|.+++| +|++.+|++++.|+.|++|++......
T Consensus 68 ------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~------------------------------- 102 (416)
T 2pm9_A 68 ------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNA------------------------------- 102 (416)
T ss_dssp ------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSC-------------------------------
T ss_pred ------------CceEEEEE--CCCCCeEEEEccCCeEEEeeccccccc-------------------------------
Confidence 88999999 689999999999999999999763200
Q ss_pred cccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCc------eee
Q 010933 178 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISD------QCF 249 (497)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~------~~~ 249 (497)
.+++..+ .+|...|.+++|+|+ +++|+++ .|+.|++||+.... ...
T Consensus 103 -------------------------~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 156 (416)
T 2pm9_A 103 -------------------------INSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL 156 (416)
T ss_dssp -------------------------CCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCB
T ss_pred -------------------------ccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccc
Confidence 0122222 689999999999998 8999999 99999999998543 221
Q ss_pred EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933 250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 329 (497)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 329 (497)
.. .....|...|.+++|+|++..+|++++.|+.|++||+++++.. ..+..+.. ..+|...+.++
T Consensus 157 ~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~-------~~~~~~~v~~~ 220 (416)
T 2pm9_A 157 TP-----GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV----IHLSYTSP-------NSGIKQQLSVV 220 (416)
T ss_dssp CC-----CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE----EEECCCCC-------SSCCCCCEEEE
T ss_pred cc-----ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc----eEEecccc-------ccccCCceEEE
Confidence 11 2346799999999999994389999999999999999987654 33333110 12335789999
Q ss_pred EEeeCC-CEEEEEec-C---eEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCC
Q 010933 330 KFANDG-QHLLSRDY-M---NLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSN 402 (497)
Q Consensus 330 ~~s~~g-~~l~~~~~-~---~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg 402 (497)
+|+|++ .+++++++ + .|++||++....++..+. +|...+ ++++|+| ++++|++++.||
T Consensus 221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI---------------LSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCE---------------EEEEECSSCSSCEEEEESSS
T ss_pred EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCce---------------eEEEeCCCCCCeEEEEeCCC
Confidence 999997 57888754 6 999999987446777777 777654 7999999 999999999999
Q ss_pred cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCc-ccccccceeEeeccCc-eecCCCCC--cccc-------------
Q 010933 403 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA-RRSSLSNLTRGLYRQA-HENSSSGH--HELS------------- 465 (497)
Q Consensus 403 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~l~~~~~d~~-~iw~~~~~--~~~~------------- 465 (497)
.|++||+.+++. ...+.+|..++.+++|+| ++ .. +++++.|+. ++|..... ....
T Consensus 286 ~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~--~~~~~-----l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 286 TVLLWNPESAEQ-LSQFPARGNWCFKTKFAP--EAPDL-----FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EEEEECSSSCCE-EEEEECSSSCCCCEEECT--TCTTE-----EEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred CEEEeeCCCCcc-ceeecCCCCceEEEEECC--CCCCE-----EEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 999999998855 488999999999999999 44 55 899999999 99932211 1111
Q ss_pred ----------------------cccCCCeEEEEEecCCCEEEEEe-CCceEEEeC
Q 010933 466 ----------------------YNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 497 (497)
Q Consensus 466 ----------------------~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~~ 497 (497)
..+..++..++|+|+|++||+++ ++.++||..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 01567888999999999999999 455999863
No 25
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=313.26 Aligned_cols=328 Identities=15% Similarity=0.159 Sum_probs=255.6
Q ss_pred cccCCcceEEEEEcCCCC-EEEEeecCCeEEEEEe----cCCccccchhhhhhhcccCCCCCCccccccccc------cc
Q 010933 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ------SH 96 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h 96 (497)
...|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++..... .+.......+. +|
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 107 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKL-------------TIIAELRHPFALSASSGKT 107 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEE-------------EEEEEEECCCCCC------
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccc-------------cccccccccccccccccCC
Confidence 345679999999999999 9999999999999999 766410000 00011112222 24
Q ss_pred CcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCC
Q 010933 97 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 176 (497)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (497)
. +.|.+++| +|++.+|++++.|+.|++|+. +++
T Consensus 108 ~------------~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~-~~~-------------------------------- 140 (425)
T 1r5m_A 108 T------------NQVTCLAW--SHDGNSIVTGVENGELRLWNK-TGA-------------------------------- 140 (425)
T ss_dssp C------------BCEEEEEE--CTTSSEEEEEETTSCEEEEET-TSC--------------------------------
T ss_pred C------------CceEEEEE--cCCCCEEEEEeCCCeEEEEeC-CCC--------------------------------
Confidence 5 78999999 689999999999999999993 222
Q ss_pred CcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecC
Q 010933 177 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 255 (497)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 255 (497)
.+..+ ..|...|.+++|+|+++.|+++ .|+.|++||+. .++....
T Consensus 141 ----------------------------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~---- 186 (425)
T 1r5m_A 141 ----------------------------LLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI-SGTVMQH---- 186 (425)
T ss_dssp ----------------------------EEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT-TTEEEEE----
T ss_pred ----------------------------eeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECC-CCcEEEE----
Confidence 12222 6889999999999999999999 99999999998 4555544
Q ss_pred CCccCCCCCC---------------eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccc
Q 010933 256 PSNMDDLTEV---------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 320 (497)
Q Consensus 256 ~~~~~~~~~~---------------i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (497)
+..+... +.+++|+|++ .+++++.||.|++||+++++.. ..+.
T Consensus 187 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~----~~~~------------- 244 (425)
T 1r5m_A 187 ---FELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPT----GKLI------------- 244 (425)
T ss_dssp ---ECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCS----EEEC-------------
T ss_pred ---eeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCcee----eeec-------------
Confidence 2333333 8899999985 6899999999999999987543 3333
Q ss_pred cccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933 321 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 399 (497)
Q Consensus 321 ~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 399 (497)
.|...+.+++|+|++++|++++ ++.|++||++. ++.+..+..|...+ .+++|+|++ +|++++
T Consensus 245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~ 307 (425)
T 1r5m_A 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSI---------------VSASWVGDD-KVISCS 307 (425)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSCE---------------EEEEEETTT-EEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCccE---------------EEEEECCCC-EEEEEe
Confidence 3557899999999999999986 59999999986 78888888777654 689999999 999999
Q ss_pred CCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC--CC----------------
Q 010933 400 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SG---------------- 460 (497)
Q Consensus 400 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~---------------- 460 (497)
.|+.|++||+.+++ ....+..|..++..++++| ++.. +++++.|+. .+|.. ..
T Consensus 308 ~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 379 (425)
T 1r5m_A 308 MDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQ--DGQK-----YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP 379 (425)
T ss_dssp TTSEEEEEETTTTE-EEEEEECTTCCEEEEEECT--TSSE-----EEEEETTSCEEEEECHHHHC--------------C
T ss_pred CCCcEEEEECCCCc-EeEecccCCccEEEEEEcC--CCCE-----EEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence 99999999999874 4478889999999999999 5666 999999999 99922 22
Q ss_pred ----CcccccccCC--CeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 461 ----HHELSYNLSS--KLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 461 ----~~~~~~~~~~--~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
.......+.. .|++++|+|++++||+++.+ .+++|+
T Consensus 380 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 380 LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 3445566765 99999999999999998855 499997
No 26
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-39 Score=314.68 Aligned_cols=328 Identities=11% Similarity=0.130 Sum_probs=253.4
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
+.+++++|+|+|++|++|+.||.|++||+.+++. ...+..|. +
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-----------------------~~~~~~~~--------------~ 99 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG-----------------------SKMLKRAD--------------Y 99 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEET-----------------------TTTSCSCC--------------E
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccce-----------------------eeEEecCC--------------c
Confidence 4456899999999999999999999999877532 33444443 4
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
..+.+. ++++++|++++.|+.|++||+.+++...
T Consensus 100 ~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------------------------------------- 133 (420)
T 3vl1_A 100 TAVDTA-KLQMRRFILGTTEGDIKVLDSNFNLQRE--------------------------------------------- 133 (420)
T ss_dssp EEEEEE-CSSSCEEEEEETTSCEEEECTTSCEEEE---------------------------------------------
T ss_pred eEEEEE-ecCCCEEEEEECCCCEEEEeCCCcceee---------------------------------------------
Confidence 444333 6899999999999999999988655322
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 271 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (497)
. +.+|...|.+++|+|+++.|++| .|+.|++||++ .++.... +.+|...|.+++|
T Consensus 134 ---------------~-~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~-------~~~h~~~v~~~~~ 189 (420)
T 3vl1_A 134 ---------------I-DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRT-------LIGHRATVTDIAI 189 (420)
T ss_dssp ---------------E-TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCCCEE-------EECCSSCEEEEEE
T ss_pred ---------------e-cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC-CCcCceE-------EcCCCCcEEEEEE
Confidence 1 26899999999999999999999 99999999998 4444443 6789999999999
Q ss_pred eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCC-----------ccccccccccccEEEEeeCCCEEEE
Q 010933 272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-----------KSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
+|++ .+|++++.|+.|++||+++++.. ..+..+...... ......+...+.+++|+|++++|++
T Consensus 190 ~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 190 IDRG-RNVLSASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp ETTT-TEEEEEETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred cCCC-CEEEEEcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 9999 99999999999999999987654 333332111110 0112234567788888999999999
Q ss_pred Ee-cCeEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcceE
Q 010933 341 RD-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGI 417 (497)
Q Consensus 341 ~~-~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~ 417 (497)
++ +|.|++||+++ ++.+..+. .|...+ ++++|+|+++ +|++|+.||.|++||+.+++....
T Consensus 265 ~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 265 GHVSGVITVHNVFS-KEQTIQLPSKFTCSC---------------NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG 328 (420)
T ss_dssp EETTSCEEEEETTT-CCEEEEECCTTSSCE---------------EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred EcCCCeEEEEECCC-CceeEEcccccCCCc---------------eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence 86 49999999987 55555553 344433 7999999999 999999999999999999866557
Q ss_pred EEec-cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC-----------CcccccccCCCeEEEEEecCCC--
Q 010933 418 TVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-----------HHELSYNLSSKLLHLAWHPTTN-- 482 (497)
Q Consensus 418 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~-----------~~~~~~~~~~~i~~l~~~p~~~-- 482 (497)
.+.. |..++..+.+. ++.. |++++.|+. ++|.... .......+...|.+++|+|+++
T Consensus 329 ~~~~~~~~~v~~~~~~---~~~~-----l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 400 (420)
T 3vl1_A 329 EFLINEGTPINNVYFA---AGAL-----FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN 400 (420)
T ss_dssp EEEESTTSCEEEEEEE---TTEE-----EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS
T ss_pred hhhccCCCCceEEEeC---CCCE-----EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc
Confidence 7776 67778777654 3445 999999999 9993221 1223457788999999999999
Q ss_pred --EEEEEeCCceEEEe
Q 010933 483 --LIACANGNSLFFHY 496 (497)
Q Consensus 483 --~la~~~~~~~~i~~ 496 (497)
++++|+.+.+.+|+
T Consensus 401 g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 401 GEVLEVGKNNFCALYN 416 (420)
T ss_dssp CEEEEEETTTEEEEEE
T ss_pred ceEEEEcCCceEEEEe
Confidence 67777788888887
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-39 Score=299.90 Aligned_cols=293 Identities=15% Similarity=0.208 Sum_probs=217.5
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccc-cc-cCcccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDYLKSLE 107 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~~~~~ 107 (497)
+|.+.|++++|+|+ +||+|+.|+.|+|||+..+.. .....+ .+ |.
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~---------- 58 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK---------- 58 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC----------
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc----------
Confidence 59999999999998 999999999999999976521 223334 33 88
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..|.+++| +|++.+|++++.|++|++|++........
T Consensus 59 --~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~--------------------------------------- 95 (330)
T 2hes_X 59 --KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTF--------------------------------------- 95 (330)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------C---------------------------------------
T ss_pred --CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCccc---------------------------------------
Confidence 88999999 68899999999999999999864321000
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc---eeeEEeecCCCccCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD---QCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~ 263 (497)
..+++..+ .+|...|.+++|+|++++|++| .|+.|++||++..+ +.... +.+|.
T Consensus 96 --------------~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~-------~~~h~ 153 (330)
T 2hes_X 96 --------------EMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV-------LQEHS 153 (330)
T ss_dssp --------------CCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE-------ECCCS
T ss_pred --------------cceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE-------eccCC
Confidence 11233333 7999999999999999999999 99999999995333 23333 67899
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC--CCEEEEE
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSR 341 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~ 341 (497)
..|.+++|+|++ .+|++++.|+.|++||.+++... .... +.+|...|.+++|+|+ +.+|+++
T Consensus 154 ~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~--~~~~-------------~~~h~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 154 QDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWE--CVAV-------------LNGHEGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp SCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE--EEEE-------------ECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred CceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCee--EEEE-------------ccCCCCcEEEEEecCCCCeeEEEEE
Confidence 999999999999 99999999999999998765210 0122 3456789999999998 6788887
Q ss_pred e-cCeEEEEecCCCC-------ceeeeeee-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 342 D-YMNLKLWDIRMDS-------TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 342 ~-~~~i~lwd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
+ |+.|++||+.... .+...+.. |...+ ++++|++++ +|++++.||.|++|+..++
T Consensus 218 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV---------------YNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE---------------EEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred eCCCeEEEEEecCCCccccceeEEeeecccccccce---------------EEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 5 5999999986421 22333333 44433 689999765 8999999999999999876
Q ss_pred Cc--ceEEEeccCc-ceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 413 SA--GGITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 413 ~~--~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
+. ....+.+|.. .++.++|+|..++.. |++|+.|+. ++|.
T Consensus 282 ~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~-----las~s~Dg~v~~W~ 325 (330)
T 2hes_X 282 EWKVFAKRALCHGVYEINVVKWLELNGKTI-----LATGGDDGIVNFWS 325 (330)
T ss_dssp EEEEEEEESCTTTTSCEEEEEEC-----CC-----EEEEETTSEEEEEE
T ss_pred ceEEEeccccccccceEEEEEEecCCCceE-----EEEecCCCcEEEEE
Confidence 32 2233467887 899999998545666 999999999 9993
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=298.12 Aligned_cols=293 Identities=16% Similarity=0.226 Sum_probs=231.0
Q ss_pred ccccccccccCccccccccccccc-ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccc
Q 010933 87 YRYKTEFQSHEPEFDYLKSLEIEE-KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 165 (497)
Q Consensus 87 ~~~~~~~~~h~~~~~~~~~~~~~~-~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (497)
+..+.++++|. + .|++++| +|++++|++++.|++|++|++.++....
T Consensus 5 ~~~~~~~~~h~------------~~~v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~------------------ 52 (345)
T 3fm0_A 5 LVLLGRVPAHP------------DSRCWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWIC------------------ 52 (345)
T ss_dssp EEEEEEECCST------------TSCEEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEE------------------
T ss_pred EEEeeeecCCC------------CCcEEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCccee------------------
Confidence 35577788998 5 8999999 7899999999999999999987654211
Q ss_pred ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCcc
Q 010933 166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 244 (497)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~ 244 (497)
...+..+|...|.+++|+|++++|++| .|+.|++|+...
T Consensus 53 ----------------------------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 53 ----------------------------------------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp ----------------------------------------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred ----------------------------------------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 111226899999999999999999999 999999999873
Q ss_pred Cc-eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 245 SD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
.. ..... +.+|...|.+++|+|++ ++|++++.|+.|++||++++... .... .+.+|.
T Consensus 93 ~~~~~~~~-------~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~----~~~~----------~~~~h~ 150 (345)
T 3fm0_A 93 DDFECVTT-------LEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEY----ECVS----------VLNSHT 150 (345)
T ss_dssp C-EEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCE----EEEE----------EECCCC
T ss_pred CCeEEEEE-------ccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCe----EEEE----------EecCcC
Confidence 32 23333 77899999999999999 99999999999999999875421 1111 134467
Q ss_pred ccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCc--eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933 324 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 400 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 400 (497)
..|.+++|+|++++|++++ |+.|++||++. +. +...+.+|...+ ++++|+|++++|++|+.
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~v---------------~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHESTV---------------WSLAFDPSGQRLASCSD 214 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCE---------------EEEEECTTSSEEEEEET
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCce---------------EEEEECCCCCEEEEEeC
Confidence 8899999999999999986 59999999985 43 456778887754 79999999999999999
Q ss_pred CCcEEEEEcCCCCcc--------------eEEEec-cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC--CC-
Q 010933 401 SNLLRIFSHGVGSAG--------------GITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GH- 461 (497)
Q Consensus 401 dg~i~vw~~~~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~--~~- 461 (497)
|+.|++|+....... ...+.+ |...|+.+++++ ++.. +++++.|+. ++|... ..
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~-----l~s~~~d~~i~vw~~~~~~~~ 287 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ--LTGA-----LATACGDDAIRVFQEDPNSDP 287 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT--TTCC-----EEEEETTSCEEEEEECTTSCT
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec--CCCE-----EEEEeCCCeEEEEEeCCCCCc
Confidence 999999997432211 123343 888999999998 4555 899999999 999221 11
Q ss_pred ---c-----ccccccCCCeEEEEEecCCC-EEEEEeC-CceEEEe
Q 010933 462 ---H-----ELSYNLSSKLLHLAWHPTTN-LIACANG-NSLFFHY 496 (497)
Q Consensus 462 ---~-----~~~~~~~~~i~~l~~~p~~~-~la~~~~-~~~~i~~ 496 (497)
. ....+|...|++++|+|++. +||+|+. +.+++|.
T Consensus 288 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 288 QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 1 11247899999999999984 8999984 5599997
No 29
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.9e-38 Score=319.30 Aligned_cols=385 Identities=11% Similarity=0.088 Sum_probs=288.4
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|.+.|++++|+|+|++||+++ ++.|+|||+.++.. ..+....+.+|.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~----------- 63 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG----------- 63 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT-----------
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC-----------
Confidence 45889999999999999999998 78999999987611 112367788998
Q ss_pred ccc-eeEEEEEecC--CCCEEEEEeCCccEEEeecCch------heeccccCCCCCccccccccccccCccccCCCCCcc
Q 010933 109 EEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 179 (497)
Q Consensus 109 ~~~-i~~l~~~~s~--~~~~l~s~s~d~~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (497)
.. |.+++| +| ++++|++++.|+.|++||+.++ ....... ...+.+.+....+.++..
T Consensus 64 -~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~~ 129 (615)
T 1pgu_A 64 -SSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE-----------FQVLAGPISDISWDFEGR 129 (615)
T ss_dssp -TSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE-----------EECCSSCEEEEEECTTSS
T ss_pred -CceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccch-----------hhcccccEEEEEEeCCCC
Confidence 88 999999 67 9999999999999999999755 2111111 111234455566677777
Q ss_pred cccccccccC--cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecC
Q 010933 180 HGYHLEWTEN--MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMK 255 (497)
Q Consensus 180 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 255 (497)
+++.++...+ +.+.+|+. .+.+..+ .+|...|.+++|+|+++ .++++ .|+.|++||.. ..+....
T Consensus 130 ~l~~~~~~~~~~~~v~~~d~-----~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~---- 198 (615)
T 1pgu_A 130 RLCVVGEGRDNFGVFISWDS-----GNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-PFKFSAS---- 198 (615)
T ss_dssp EEEEEECCSSCSEEEEETTT-----CCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-TBEEEEE----
T ss_pred EEEEeccCCCCccEEEEEEC-----CCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC-Ccceeee----
Confidence 7777765332 56777773 2355555 79999999999999998 78888 99999999998 5555554
Q ss_pred CCccCCCCC---CeEEEEEeCC-CCcEEEEEeCCCeEEEEEccCCccccccccee-cccccccCCccccccccccccEEE
Q 010933 256 PSNMDDLTE---VITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 256 ~~~~~~~~~---~i~~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
+.+|.. .|.+++|+|+ + .+|++++.||.|++||+++++.. ..+ .. ...|...|.+++
T Consensus 199 ---~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~----------~~~~~~~v~~~~ 260 (615)
T 1pgu_A 199 ---DRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD----------QEPVQGGIFALS 260 (615)
T ss_dssp ---ECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT----------TBCCCSCEEEEE
T ss_pred ---ecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc----------ccccCCceEEEE
Confidence 667888 9999999999 8 99999999999999999987654 332 10 013557889999
Q ss_pred EeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeec---------------------------------------------
Q 010933 331 FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH--------------------------------------------- 364 (497)
Q Consensus 331 ~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~--------------------------------------------- 364 (497)
|+ ++++|++++ ++.|++||+++ ++.+..+..+
T Consensus 261 ~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~ 338 (615)
T 1pgu_A 261 WL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGH 338 (615)
T ss_dssp ES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCC
T ss_pred Ec-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCC
Confidence 99 888888875 48999999875 4444433322
Q ss_pred cccccccc------------------------------------------------------------------------
Q 010933 365 EHLRPKLC------------------------------------------------------------------------ 372 (497)
Q Consensus 365 ~~~~~~~~------------------------------------------------------------------------ 372 (497)
...+..++
T Consensus 339 ~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~ 418 (615)
T 1pgu_A 339 NKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDG 418 (615)
T ss_dssp SSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSS
T ss_pred CCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCC
Confidence 10000000
Q ss_pred -----------------------------------------------c---------------cCCCCCccceeEEEEcC
Q 010933 373 -----------------------------------------------D---------------LYNNDSIFDKFECSVSG 390 (497)
Q Consensus 373 -----------------------------------------------~---------------~~~~~~~~~~~~~~~s~ 390 (497)
+ ..-......+++++|+|
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (615)
T 1pgu_A 419 FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 498 (615)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT
T ss_pred CEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC
Confidence 0 00000112357899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcceEEEec-cCcceeeeEeecCC--------CcccccccceeEeeccCc-eecCC--
Q 010933 391 DGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAP--------RARRSSLSNLTRGLYRQA-HENSS-- 458 (497)
Q Consensus 391 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--------~~~~~~~~~l~~~~~d~~-~iw~~-- 458 (497)
++++|++++.||.|++||+.+++.+ ..+.+ |..++++++|+|.. ++.+ |++++.|+. ++|..
T Consensus 499 ~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~-----l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 499 SETYIAAGDVMGKILLYDLQSREVK-TSRWAFRTSKINAISWKPAEKGANEEEIEEDL-----VATGSLDTNIFIYSVKR 572 (615)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEE-ECCSCCCSSCEEEEEECCCC------CCSCCE-----EEEEETTSCEEEEESSC
T ss_pred CCCEEEEcCCCCeEEEeeCCCCcce-eEeecCCCCceeEEEEcCccccccccccCCCE-----EEEEcCCCcEEEEECCC
Confidence 9999999999999999999988554 66777 99999999999832 4555 999999999 99932
Q ss_pred C-CCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 459 S-GHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 459 ~-~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
+ .......+|...|++++|+|+++ |++++.| .+++|+
T Consensus 573 ~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 573 PMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp TTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred CceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 2 45556778999999999999999 8888854 599996
No 30
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-40 Score=320.90 Aligned_cols=338 Identities=12% Similarity=0.053 Sum_probs=235.8
Q ss_pred cccCCcceEEEEEcCCC---------CEEEEe-------------------ecCCeEEEEEecCCccccchhhhhhhccc
Q 010933 28 ELQDVDIVSAIEFDKTG---------DYLAVG-------------------DRGGRVILFETVGGKNHISRSELEKQMDF 79 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g---------~~lasg-------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 79 (497)
.+.+.+.|.+|+|+|++ ++||+| +.|++|+||++++++.
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~------------- 195 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL------------- 195 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC-------------
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC-------------
Confidence 34457889999999986 677764 4678999999987642
Q ss_pred CCCCCCcccccccccccCcccccccccccccceeEEEEEec----CCCCEEEEEeCCccEEEeecCchheeccccCCCCC
Q 010933 80 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA----PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP 155 (497)
Q Consensus 80 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s----~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~ 155 (497)
.......+.+|. +.|.+++|+|. +++.+|++++.||+|++||+..+.........
T Consensus 196 ------~~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~--- 254 (524)
T 2j04_B 196 ------HCVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM--- 254 (524)
T ss_dssp ------CEEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC---
T ss_pred ------CceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee---
Confidence 111123456677 88999999753 34679999999999999999765421000000
Q ss_pred ccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC
Q 010933 156 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD 234 (497)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d 234 (497)
..++...+ .+|...|++++|++++ .|++| .|
T Consensus 255 ----------------------------------------------~~~p~~~l-~~h~~~v~sv~~s~~~-~lasgs~D 286 (524)
T 2j04_B 255 ----------------------------------------------CEKPSLTL-SLADSLITTFDFLSPT-TVVCGFKN 286 (524)
T ss_dssp ----------------------------------------------CCSCSEEE-CCTTTCEEEEEESSSS-EEEEEETT
T ss_pred ----------------------------------------------ecCceEEE-EcCCCCEEEEEecCCC-eEEEEeCC
Confidence 00122233 7899999999999865 78888 99
Q ss_pred CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE--EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccc
Q 010933 235 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 312 (497)
Q Consensus 235 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~ 312 (497)
|+|++||++........ +.+|...|.++ +|+|++..+||+++.|+.|+|||+++++.. ..+..|..
T Consensus 287 gtV~lWD~~~~~~~~~~-------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~----~~~~~~~~- 354 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFY-------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT----KTTVSRFR- 354 (524)
T ss_dssp SEEEEEETTBCSSCSEE-------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH----CEEEEECS-
T ss_pred CEEEEEECCCCCCceEE-------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc----cccccccc-
Confidence 99999999844333332 67899999999 467764368999999999999999987644 33333210
Q ss_pred cCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933 313 HGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 391 (497)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 391 (497)
...+.+++|+|+++.+++++ ++.|++||++. +.++..+.+|...+ ++++|+|+
T Consensus 355 ----------~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V---------------~sva~Sp~ 408 (524)
T 2j04_B 355 ----------GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI---------------TAIGVSRL 408 (524)
T ss_dssp ----------CCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE---------------EEEECCSS
T ss_pred ----------cCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce---------------EEEEeCCC
Confidence 12478999999999999885 49999999987 77778888998865 79999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCcceEEEec-----cCcceeeeEeecCCCcccccccceeEeeccCceec--C-CCCCcc
Q 010933 392 GLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--S-SSGHHE 463 (497)
Q Consensus 392 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw--~-~~~~~~ 463 (497)
+++|++|+.||+|++||+..+ .. ...+. +...+++++|+| ++.. + . ..++..+| . .+....
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~-~~-~~~~~~~~~~~~~~v~~v~~sp--~g~~-----~-~-~~~~~~~~~~~~~g~~~~ 477 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARR-LL-HGIKNSSATQKSLRLWKWDYSI--KDDK-----Y-R-IDSSYEVYPLTVNDVSKA 477 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSS-TT-TCC------CCCCEEEECBCCS--SSCE-----E-E-ECCCCCCCC---------
T ss_pred CCeEEEEECCCEEEEEechHh-hc-cccccCccceeeeEEEEeccCC--CCCe-----E-E-ccCCceecccccCCccee
Confidence 999999999999999998654 21 22111 122567888888 3332 2 2 22333444 2 355666
Q ss_pred cccccCCCeEEEEEecCCC---EEEEEeC-CceEEEe
Q 010933 464 LSYNLSSKLLHLAWHPTTN---LIACANG-NSLFFHY 496 (497)
Q Consensus 464 ~~~~~~~~i~~l~~~p~~~---~la~~~~-~~~~i~~ 496 (497)
.+.+|...|.+|+|+|+++ .||+|+. +.++||.
T Consensus 478 ~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 478 KIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp ----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 7889999999999999965 8999996 4599996
No 31
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-38 Score=348.92 Aligned_cols=381 Identities=15% Similarity=0.184 Sum_probs=282.8
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. +..+.+|.
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-----------------------~~~~~~~~------------ 699 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL-----------------------VHTYDEHS------------ 699 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECCS------------
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-----------------------EEEEcCCC------------
Confidence 5899999999999999999999999999999988743 67788998
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++|+|..++..+++++.|+.|++||+.+++.......+ .+.+....+.++...+++++. +
T Consensus 700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h-------------~~~v~~~~~sp~~~~l~s~s~--d 764 (1249)
T 3sfz_A 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH-------------TNSVNHCRFSPDDELLASCSA--D 764 (1249)
T ss_dssp SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC-------------SSCEEEEEECSSTTEEEEEES--S
T ss_pred CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC-------------CCCEEEEEEecCCCEEEEEEC--C
Confidence 8899999965446778999999999999999988755433221 122223333334444444433 4
Q ss_pred cceEEEeecCCc---------------------------------------------------cceeeeeeccCCCCCee
Q 010933 190 MATKIANVGNSV---------------------------------------------------HARCQKVYPHAHDFNIN 218 (497)
Q Consensus 190 ~~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~h~~~v~ 218 (497)
+.+++||+.... .......+..+|...|.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 445555543221 11233333358899999
Q ss_pred EEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCc
Q 010933 219 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 297 (497)
Q Consensus 219 ~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 297 (497)
+++|+|+++.++++ .|+.|++||+. .+..... +.+|...|.+++|+|++ ..|++++.||.|++||+.+..
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~-~~~~~~~-------~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~ 915 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNID-SRLKVAD-------CRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVC 915 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETT-TTEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHH
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcC-CCceeee-------cCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccc
Confidence 99999999999999 99999999999 5555544 67899999999999999 999999999999999976421
Q ss_pred cccc----------------------------------------------------------------ccceeccccccc
Q 010933 298 LCDH----------------------------------------------------------------SARILRDAAESH 313 (497)
Q Consensus 298 ~~~~----------------------------------------------------------------~~~~~~~~~~~~ 313 (497)
.... .+..+.. ...
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~--~~~ 993 (1249)
T 3sfz_A 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL--PNN 993 (1249)
T ss_dssp SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET--TTT
T ss_pred eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc--CCC
Confidence 1000 0000000 001
Q ss_pred CCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCcee----------------------------------
Q 010933 314 GSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPV---------------------------------- 358 (497)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~---------------------------------- 358 (497)
.....+.+|...|.+++|+|+|++|++++ |+.|++||+.+ ++..
T Consensus 994 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT-TEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEET
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEEC
Confidence 11123457888999999999999988875 48888888765 3322
Q ss_pred ------eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEee
Q 010933 359 ------ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 432 (497)
Q Consensus 359 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~ 432 (497)
..+.+|... +++++|+|++++|++++.||.|++||+.+++.. ..+.+|..+|.+++|+
T Consensus 1073 ~~~~~~~~~~~~~~~---------------v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~-~~l~~h~~~v~~~~~s 1136 (1249)
T 3sfz_A 1073 ITGRIERDFTCHQGT---------------VLSCAISSDATKFSSTSADKTAKIWSFDLLSPL-HELKGHNGCVRCSAFS 1136 (1249)
T ss_dssp TTTCCCEEEECCSSC---------------CCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-BCCCCCSSCEEEEEEC
T ss_pred CCCceeEEEcccCCc---------------EEEEEECCCCCEEEEEcCCCcEEEEECCCccee-eeeccCCCcEEEEEEC
Confidence 122222221 368999999999999999999999999988654 7889999999999999
Q ss_pred cCCCcccccccceeEeeccCc-eec--CCCCCcccc---------cccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 433 AAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELS---------YNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 433 ~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~---------~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
| ++.. +++|+.||. ++| ..++..... ..|...|++++|+|++++|++++ +.+++|.
T Consensus 1137 ~--dg~~-----lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd 1204 (1249)
T 3sfz_A 1137 L--DGIL-----LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWN 1204 (1249)
T ss_dssp S--SSSE-----EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBC
T ss_pred C--CCCE-----EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-CeEEEEE
Confidence 9 6666 999999999 999 333333332 56888999999999999999886 7899996
No 32
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.2e-38 Score=329.09 Aligned_cols=323 Identities=16% Similarity=0.183 Sum_probs=263.9
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+|+|++||+|+.||.|+|||+.+++. +..+.+|.
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------------------~~~~~~~~------------ 55 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------------------VRSIQVTE------------ 55 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS------------
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------------------EEEEecCC------------
Confidence 5899999999999999999999999999999987643 67788898
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.+|.+++| +|++++|++++.||.|++|++.+++...
T Consensus 56 ~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~------------------------------------------ 91 (814)
T 3mkq_A 56 TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVV------------------------------------------ 91 (814)
T ss_dssp SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEE------------------------------------------
T ss_pred CcEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEE------------------------------------------
Confidence 89999999 5789999999999999999998766322
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.+ .+|...|.+++|+|+++.|+++ .|+.|++||++........ +.+|...|.+
T Consensus 92 ------------------~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-------~~~~~~~v~~ 145 (814)
T 3mkq_A 92 ------------------DF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHEHFVMC 145 (814)
T ss_dssp ------------------EE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-------EECCSSCEEE
T ss_pred ------------------EE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-------EcCCCCcEEE
Confidence 22 6889999999999999999999 9999999999854455554 6789999999
Q ss_pred EEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee--CCCEEEEEec-C
Q 010933 269 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDY-M 344 (497)
Q Consensus 269 ~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~-~ 344 (497)
++|+| ++ ..|++++.||.|++||++++... ..+.. .+...+.+++|+| ++.+|++++. +
T Consensus 146 ~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~~~~~l~~~~~dg 208 (814)
T 3mkq_A 146 VAFNPKDP-STFASGCLDRTVKVWSLGQSTPN----FTLTT------------GQERGVNYVDYYPLPDKPYMITASDDL 208 (814)
T ss_dssp EEEETTEE-EEEEEEETTSEEEEEETTCSSCS----EEEEC------------CCTTCCCEEEECCSTTCCEEEEECTTS
T ss_pred EEEEcCCC-CEEEEEeCCCeEEEEECCCCcce----eEEec------------CCCCCEEEEEEEECCCCCEEEEEeCCC
Confidence 99999 77 89999999999999999876543 22222 1236799999999 9999999864 9
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
.|++||+++ ++.+..+.+|...+ .+++|+|++++|++++.||.|++||+.+++. ...+..|..
T Consensus 209 ~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~ 271 (814)
T 3mkq_A 209 TIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-EKTLNVGLE 271 (814)
T ss_dssp EEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTCSE-EEEECCSSS
T ss_pred EEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEeecCCC
Confidence 999999986 88888898887754 6899999999999999999999999998754 488899999
Q ss_pred ceeeeEeecCCCcccccccceeEeeccCceecCCCCC--c----------------------------------------
Q 010933 425 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGH--H---------------------------------------- 462 (497)
Q Consensus 425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~--~---------------------------------------- 462 (497)
++.+++++|.....+ +++++.++..+|..... .
T Consensus 272 ~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (814)
T 3mkq_A 272 RSWCIATHPTGRKNY-----IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS 346 (814)
T ss_dssp SEEEEEECTTCGGGE-----EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBC
T ss_pred cEEEEEEccCCCceE-----EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccce
Confidence 999999999422112 55555444455521100 0
Q ss_pred ---ccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 463 ---ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 463 ---~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
.....+...+.+++|+|+|++||+++++.+++|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~ 383 (814)
T 3mkq_A 347 LQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYT 383 (814)
T ss_dssp CCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEE
T ss_pred eeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEE
Confidence 0012244468899999999999999988899986
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.3e-38 Score=295.55 Aligned_cols=321 Identities=13% Similarity=0.127 Sum_probs=255.5
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
+.++|.+++|+|||++++++..++.+.+|...... . .....+|. +
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~----------------------~-~~~~~~h~------------~ 52 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA----------------------R-QINTLNHG------------E 52 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE----------------------E-EEEEECCS------------S
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc----------------------c-cceeccCC------------C
Confidence 56789999999999999998877776666433211 1 22234677 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.+++| +|+++++++++ |+.|++|++.++.....
T Consensus 53 ~v~~~~~--~~~~~~l~~~~-dg~i~iw~~~~~~~~~~------------------------------------------ 87 (337)
T 1gxr_A 53 VVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSP------------------------------------------ 87 (337)
T ss_dssp CCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSC------------------------------------------
T ss_pred ceEEEEE--ecCCcEEEEcC-CCeEEEEECCCCCceee------------------------------------------
Confidence 8999999 68999999998 99999999987653211
Q ss_pred ceEEEeecCCccceeeeee-ccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 191 ATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
...+ ..+|...|.+++|+|+++.|+++ .|+.|++||++........ .+..|...|.+
T Consensus 88 ---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------~~~~~~~~i~~ 146 (337)
T 1gxr_A 88 ---------------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA------ELTSSAPACYA 146 (337)
T ss_dssp ---------------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE------EEECSSSCEEE
T ss_pred ---------------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee------ecccCCCceEE
Confidence 0100 13788899999999999999999 9999999999843321211 25678899999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+|++ ++|++++.||.|++||+++++.. ..+. .|...+.+++|+|++++|++++ ++.|+
T Consensus 147 ~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 147 LAISPDS-KVCFSCCSDGNIAVWDLHNQTLV----RQFQ-------------GHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCCC-CEEEEEeCCCcEEEEeCCCCcee----eeee-------------cccCceEEEEECCCCCEEEEEecCCcEE
Confidence 9999999 99999999999999999987543 3333 3557899999999999999986 59999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+||++. ++.+..+.. ...+ .+++|+|++++|++++.|+.|++||+.+++. ..+..|..++.
T Consensus 209 ~~d~~~-~~~~~~~~~-~~~v---------------~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~v~ 269 (337)
T 1gxr_A 209 SWDLRE-GRQLQQHDF-TSQI---------------FSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHESCVL 269 (337)
T ss_dssp EEETTT-TEEEEEEEC-SSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTSSCE--EEECCCSSCEE
T ss_pred EEECCC-CceEeeecC-CCce---------------EEEEECCCCCEEEEEcCCCcEEEEECCCCCe--EEEcCCcccee
Confidence 999986 777766643 3322 6899999999999999999999999987643 67889999999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eecCCC-CCcccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~-~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
.+++++ ++.. +++++.|+. ++|... ........+...|.+++|+|++++|++++.+ .+++|+
T Consensus 270 ~~~~~~--~~~~-----l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 270 SLKFAY--CGKW-----FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEECT--TSSE-----EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEECC--CCCE-----EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 999998 6666 999999999 999322 2333456788999999999999999999855 499996
No 34
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.5e-39 Score=305.90 Aligned_cols=298 Identities=15% Similarity=0.168 Sum_probs=237.9
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
.+..++++|. +.|++++| +|++++|++|+.|++|++||+.+++...
T Consensus 57 ~~~~~l~gH~------------~~V~~~~~--sp~~~~l~s~s~D~~v~iWd~~~~~~~~-------------------- 102 (380)
T 3iz6_a 57 VCCRTLQGHS------------GKVYSLDW--TPEKNWIVSASQDGRLIVWNALTSQKTH-------------------- 102 (380)
T ss_dssp EEEEEECCCS------------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTEEEE--------------------
T ss_pred EEeecccccc------------cEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCccce--------------------
Confidence 4567889999 99999999 6899999999999999999998765322
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 246 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~ 246 (497)
.+ ..|...|.+++|+|+++.|++| .|+.+++||+....
T Consensus 103 ----------------------------------------~~-~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 103 ----------------------------------------AI-KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp ----------------------------------------EE-ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred ----------------------------------------EE-ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence 22 6888899999999999999999 99999999987322
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 326 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 326 (497)
...... .....+.+|...+.++.|.|++...|++++.|+.|++||+++++.. ..+.. ....+|...+
T Consensus 142 ~~~~~~-~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~----~~~~~--------~~~~~h~~~v 208 (380)
T 3iz6_a 142 DRDGNM-PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI----SIFGS--------EFPSGHTADV 208 (380)
T ss_dssp SCCCSS-TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE----EEECC--------CSSSSCCSCE
T ss_pred cccCCc-cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE----EEeec--------ccCCCCccCe
Confidence 110000 0012367899999999999986478999999999999999988654 22221 0113567889
Q ss_pred cEEEEee-CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE
Q 010933 327 SDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 404 (497)
Q Consensus 327 ~~~~~s~-~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 404 (497)
.+++|++ ++++|++|+ |+.|++||++...+.+..+.+|...+ ++++|+|++++|++|+.||.|
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI---------------NSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCC---------------CEEEECTTSSEEEEECSSSCE
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCe---------------EEEEEecCCCeEEEEcCCCeE
Confidence 9999987 788999986 59999999986567888899998865 699999999999999999999
Q ss_pred EEEEcCCCCcceEEEeccC-------cceeeeEeecCCCcccccccceeEeeccCc-eecCC--CCCcccc----cccCC
Q 010933 405 RIFSHGVGSAGGITVEAGK-------NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELS----YNLSS 470 (497)
Q Consensus 405 ~vw~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~~~~~~----~~~~~ 470 (497)
++||+.+++.+ ..+..+. ..+.+++|+| ++.+ +++|+.|+. ++|.. ++..... .+|..
T Consensus 274 ~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~g~~-----l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 274 RLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSI--SGRL-----LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp EEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECS--SSSE-----EEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred EEEECCCCcEE-EEecccccccccccCceEEEEECC--CCCE-----EEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence 99999988544 4444432 2488999998 6666 999999999 99933 3332222 57899
Q ss_pred CeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 471 KLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 471 ~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
.|++++|+|+|.+||+|+ ++.+++|.
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 999999999999999999 55699997
No 35
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.7e-38 Score=295.18 Aligned_cols=290 Identities=13% Similarity=0.146 Sum_probs=235.4
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
+...++.+|. +.|++++| +|++++|++++.|++|++||..+++...
T Consensus 55 ~~~~~l~gH~------------~~V~~~~~--s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-------------------- 100 (354)
T 2pbi_B 55 KTRRTLKGHG------------NKVLCMDW--CKDKRRIVSSSQDGKVIVWDSFTTNKEH-------------------- 100 (354)
T ss_dssp CEEEEEECCS------------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEE--------------------
T ss_pred EEEEEecCCC------------CeEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCCcce--------------------
Confidence 3456788999 99999999 6899999999999999999987655322
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 246 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~ 246 (497)
.+ ..|...|.+++|+|+|..+++| .|+.+++|++....
T Consensus 101 ----------------------------------------~~-~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 101 ----------------------------------------AV-TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp ----------------------------------------EE-ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred ----------------------------------------EE-ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 11 4677889999999999999999 99999999986321
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 326 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 326 (497)
..... .....+..|...|.+++|+|++ ..|++++.|+.|++||+++++.. ..+. +|...+
T Consensus 140 ~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~----~~~~-------------~h~~~v 199 (354)
T 2pbi_B 140 NENMA--AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL----QSFH-------------GHGADV 199 (354)
T ss_dssp TCCSG--GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCE
T ss_pred ccccc--ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE----EEEc-------------CCCCCe
Confidence 10000 0001256799999999999999 99999999999999999987654 3443 356789
Q ss_pred cEEEEee--CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933 327 SDIKFAN--DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 403 (497)
Q Consensus 327 ~~~~~s~--~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 403 (497)
.+++|+| +|++|++|+ |+.|++||+++ ++++..+.+|...+ ++++|+|++.+|++|+.|+.
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESDV---------------NSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSC
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCCe---------------EEEEEeCCCCEEEEEeCCCe
Confidence 9999987 578999985 59999999997 88899999888765 79999999999999999999
Q ss_pred EEEEEcCCCCcceEEEec--cCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEe
Q 010933 404 LRIFSHGVGSAGGITVEA--GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWH 478 (497)
Q Consensus 404 i~vw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~ 478 (497)
|++||+..+... ..+.. +...+.+++|++ ++.+ +++|+.|+. ++| ..+.....+.+|...|++++|+
T Consensus 264 v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~--~g~~-----l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 264 CRLYDLRADREV-AIYSKESIIFGASSVDFSL--SGRL-----LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335 (354)
T ss_dssp EEEEETTTTEEE-EEECCTTCCSCEEEEEECT--TSSE-----EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred EEEEECCCCcEE-EEEcCCCcccceeEEEEeC--CCCE-----EEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC
Confidence 999999877443 34433 334788999998 6666 999999999 999 3445556677899999999999
Q ss_pred cCCCEEEEEeCC-ceEEEe
Q 010933 479 PTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 479 p~~~~la~~~~~-~~~i~~ 496 (497)
|+|++||+|+.| .+++|+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 999999999955 599995
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-37 Score=291.21 Aligned_cols=294 Identities=14% Similarity=0.148 Sum_probs=227.0
Q ss_pred ccccccccccCcccccccccccccceeEEEEEe----cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccc
Q 010933 87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 162 (497)
Q Consensus 87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~----s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 162 (497)
+.....+++|. +.|++++|.+ .+++++|++|+.|++|++||+...+....
T Consensus 11 ~~~~~~l~gH~------------~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-------------- 64 (343)
T 2xzm_R 11 VVKRGILEGHS------------DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-------------- 64 (343)
T ss_dssp EEEEEEEECCS------------SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB--------------
T ss_pred eeeeeeeccch------------hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc--------------
Confidence 35567889999 8999999932 24888999999999999999875431110
Q ss_pred cccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEe
Q 010933 163 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 241 (497)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd 241 (497)
...+...+ .+|...|.+++|+|++.++++| .|++|++||
T Consensus 65 ---------------------------------------~~~~~~~l-~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd 104 (343)
T 2xzm_R 65 ---------------------------------------FGIPHKAL-TGHNHFVSDLALSQENCFAISSSWDKTLRLWD 104 (343)
T ss_dssp ---------------------------------------SEEEEEEE-CCCSSCEEEEEECSSTTEEEEEETTSEEEEEE
T ss_pred ---------------------------------------cccccchh-ccCCCceEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 11233333 7999999999999999999999 999999999
Q ss_pred CccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933 242 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 321 (497)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (497)
++ .++.... +.+|...|.+++|+|++ .+|++++.|+.|++||++..... .... ..+
T Consensus 105 ~~-~~~~~~~-------~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~-----~~~~----------~~~ 160 (343)
T 2xzm_R 105 LR-TGTTYKR-------FVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF-----SSAE----------KEN 160 (343)
T ss_dssp TT-SSCEEEE-------EECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE-----ECCT----------TTS
T ss_pred CC-CCcEEEE-------EcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee-----eeec----------ccC
Confidence 99 4555544 67899999999999999 99999999999999999743211 1110 124
Q ss_pred ccccccEEEEeeCC----------CEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933 322 IIASISDIKFANDG----------QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 390 (497)
Q Consensus 322 ~~~~i~~~~~s~~g----------~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 390 (497)
|...+.+++|+|++ .+|++++ |+.|++||.. .+....+.+|...+ ++++|+|
T Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v---------------~~~~~s~ 223 (343)
T 2xzm_R 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNV---------------NHLSISP 223 (343)
T ss_dssp CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCE---------------EEEEECT
T ss_pred CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccc---------------eEEEECC
Confidence 56789999999987 6888875 5999999953 67777888888754 7899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC--CCCcc--cc
Q 010933 391 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHE--LS 465 (497)
Q Consensus 391 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~~~~--~~ 465 (497)
++++|++|+.||.|++||+.........+ .+...+.+++|+| ++++ ++++ .|+. ++|.. ..... ..
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp--~~~~-----la~~-~d~~v~iw~~~~~~~~~~~~~ 294 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNP--KLQW-----VAVG-TDQGVKIFNLMTQSKAPVCTI 294 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECS--SSCE-----EEEE-ESSCEEEEESSSCCSCSEEEC
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECC--CCCE-----EEEE-CCCCEEEEEeCCCCCCceEEe
Confidence 99999999999999999996544443444 3556799999998 4555 5554 5555 99932 22111 11
Q ss_pred -----------cccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 466 -----------YNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 466 -----------~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
.+|...|.+++|+|+|++||+|+.| .+++|.
T Consensus 295 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 295 EAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp CCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred ecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 2577889999999999999999955 588996
No 37
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1e-37 Score=292.73 Aligned_cols=301 Identities=16% Similarity=0.161 Sum_probs=228.3
Q ss_pred ccCCcceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
.+|.+.|++|+|+|+ +++||||+.|++|+|||+.+.+. ........+++|.
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~------------------~~~~~~~~l~~h~---------- 86 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET------------------NYGIPQRALRGHS---------- 86 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS------------------CSEEEEEEECCCS----------
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc------------------ccceeeEEEeCCC----------
Confidence 369999999999997 68999999999999999987542 0123456788998
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..|.+++| +|++++|++++.|+.|++|+.............. .........+....+++++.
T Consensus 87 --~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~s~s~- 148 (340)
T 4aow_A 87 --HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT-------------KDVLSVAFSSDNRQIVSGSR- 148 (340)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------------SCEEEEEECTTSSCEEEEET-
T ss_pred --CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCCC-------------CceeEEEEeecCccceeecC-
Confidence 89999999 6899999999999999999998776544322211 12223333455566666654
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
++.+++|+..... .......+|...+..++|++++ ..++++ .|+.|++||++ ..+.... +.+|..
T Consensus 149 -d~~~~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~-------~~~h~~ 216 (340)
T 4aow_A 149 -DKTIKLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTN-------HIGHTG 216 (340)
T ss_dssp -TSCEEEECTTSCE---EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TTEEEEE-------ECCCSS
T ss_pred -CCeEEEEEeCCCc---eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC-CCceeeE-------ecCCCC
Confidence 8899999987532 2222337899999999998754 467777 99999999999 5555554 678999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecC
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 344 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 344 (497)
.|++++|+|++ ++|++++.|+.|++||+++.+.+ ..+.. ...+.++.|+|++.+++++.++
T Consensus 217 ~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~~~~~~~~~~~~d~ 277 (340)
T 4aow_A 217 YLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL----YTLDG--------------GDIINALCFSPNRYWLCAATGP 277 (340)
T ss_dssp CEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSSSEEEEEETT
T ss_pred cEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee----eeecC--------------CceEEeeecCCCCceeeccCCC
Confidence 99999999999 99999999999999999987654 33333 3578999999999888888889
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
.|++||++. +..+..+..+..... .......+++++|+||+++|++|+.||.|+|||+++|.
T Consensus 278 ~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 278 SIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999985 666655543221100 00001123799999999999999999999999999874
No 38
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.4e-37 Score=290.50 Aligned_cols=288 Identities=17% Similarity=0.257 Sum_probs=226.3
Q ss_pred cCCcceEEEEE-----cC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccc
Q 010933 30 QDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 103 (497)
Q Consensus 30 ~h~~~I~~i~~-----sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 103 (497)
+|.+.|++++| ++ ++++||+|+.|++|+|||+...+.. .........+.+|.
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~----------------~~~~~~~~~l~~h~------ 76 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN----------------GYFGIPHKALTGHN------ 76 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS----------------SBSEEEEEEECCCS------
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc----------------cccccccchhccCC------
Confidence 59999999999 77 9999999999999999999764320 00113356688998
Q ss_pred cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
..|.+++| +|++.++++++.|++|++||+.+++..
T Consensus 77 ------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~------------------------------------- 111 (343)
T 2xzm_R 77 ------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTY------------------------------------- 111 (343)
T ss_dssp ------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEE-------------------------------------
T ss_pred ------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEE-------------------------------------
Confidence 88999999 688999999999999999999876532
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
..+ .+|...|.+++|+|+++.|++| .|+.|++||+. ....... ....+|
T Consensus 112 -----------------------~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~-----~~~~~~ 161 (343)
T 2xzm_R 112 -----------------------KRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSS-----AEKENH 161 (343)
T ss_dssp -----------------------EEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEEC-----CTTTSC
T ss_pred -----------------------EEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeee-----ecccCC
Confidence 222 6899999999999999999999 99999999998 3333221 123478
Q ss_pred CCCeEEEEEeCCCC---------cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee
Q 010933 263 TEVITSAEFHPIYC---------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 333 (497)
Q Consensus 263 ~~~i~~~~~~~~~~---------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 333 (497)
...|.+++|+|++. .+|++++.|+.|++||.+. +.. .. +.+|...|.+++|+|
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~----~~-------------~~~h~~~v~~~~~s~ 223 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIR----YT-------------FKAHESNVNHLSISP 223 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEE----EE-------------EECCSSCEEEEEECT
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-cee----EE-------------EcCccccceEEEECC
Confidence 99999999999852 5899999999999999532 211 22 234668899999999
Q ss_pred CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 334 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 334 ~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
+|++|++|+ |+.|++||+.....+...+.. ... +.+++|+|++++|+++ .|+.|++|++.++
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~---------------v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILNLTYPQREFDA-GST---------------INQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSCCSSCSEEEEC-SSC---------------EEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceeecC-CCc---------------EEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 999999986 599999999543444444432 222 2689999999887655 5788999999876
Q ss_pred Ccce-EEEe-----------ccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 413 SAGG-ITVE-----------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 413 ~~~~-~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+... ..+. +|...+.+++|+| ++.. |++|+.||. ++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~-----l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 287 SKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA--LGKK-----LFAGFTDGVIRTF 336 (343)
T ss_dssp CSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS--SSCC-----EEEEETTSEEEEE
T ss_pred CCCceEEeecCcchhhhhhcCCCCceEEEEECC--CCCe-----EEEecCCceEEEE
Confidence 5432 1333 6888899999999 6666 999999999 999
No 39
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.4e-38 Score=307.27 Aligned_cols=295 Identities=15% Similarity=0.169 Sum_probs=218.2
Q ss_pred cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.|...|+||+|+| ++++||+|+.||.|+|||+.+++. .....+.+|.
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~---------------------~~~~~~~gH~----------- 164 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK---------------------PTFIKGIGAG----------- 164 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC---------------------CEEECCCSSS-----------
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc---------------------eeEEEccCCC-----------
Confidence 4778899999999 567999999999999999987643 3345567898
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|++|+|+| .++.+|++++.|++|++||++++.......
T Consensus 165 -~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------------------------------------- 204 (435)
T 4e54_B 165 -GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFAS-------------------------------------- 204 (435)
T ss_dssp -CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEEC--------------------------------------
T ss_pred -CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEec--------------------------------------
Confidence 8999999943 367899999999999999997654222110
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
...+...+.+++|+|++++|++| .||.|++||++ ++. +. ++.+|...|.
T Consensus 205 ---------------------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~-~~-------~~~~h~~~v~ 254 (435)
T 4e54_B 205 ---------------------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKE-LW-------NLRMHKKKVT 254 (435)
T ss_dssp ---------------------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCB-CC-------CSBCCSSCEE
T ss_pred ---------------------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cce-eE-------EEecccceEE
Confidence 02445567889999999999999 99999999997 332 22 3778999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i 346 (497)
+++|+|++..+|++++.|+.|++||+++.+... .+. ...+|...|++++|+|+|++|++++ |+.|
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~----~~~----------~~~~h~~~v~~~~~spdg~~l~s~~~D~~i 320 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKA----SFL----------YSLPHRHPVNAACFSPDGARLLTTDQKSEI 320 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCSSS----CCS----------BCCBCSSCEEECCBCTTSSEEEEEESSSCE
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccccc----eEE----------EeeeccccccceeECCCCCeeEEEcCCCEE
Confidence 999999985689999999999999998865431 111 1235678999999999999999985 5999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe------------CCCcEEEEEcCCCCc
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------------YSNLLRIFSHGVGSA 414 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~------------~dg~i~vw~~~~~~~ 414 (497)
++||+.. +.....+..|....... .. .....|+|++.++++++ .++.|++||..+++.
T Consensus 321 ~iwd~~~-~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 321 RVYSASQ-WDCPLGLIPHPHRHFQH------LT---PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp EEEESSS-SSSEEEECCCCCCCCSS------SC---CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred EEEECCC-CccceEEeccccccccc------ce---eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 9999986 66666666554321100 00 12466777777666654 235688999887744
Q ss_pred ceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEE-EEecCCCEEEEEeCCceE
Q 010933 415 GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL-AWHPTTNLIACANGNSLF 493 (497)
Q Consensus 415 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l-~~~p~~~~la~~~~~~~~ 493 (497)
+.....+| ...|.++ +|||+|++||+|+++.++
T Consensus 391 ~~~l~~~~----------------------------------------------~~~v~s~~~fspdg~~lasg~d~~i~ 424 (435)
T 4e54_B 391 MCQLYDPE----------------------------------------------SSGISSLNEFNPMGDTLASAMGYHIL 424 (435)
T ss_dssp EEEECCSS----------------------------------------------CCCCCCEEEECTTSSCEEEECSSEEE
T ss_pred EEEEeCCC----------------------------------------------CCcEEEEEEECCCCCEEEEEcCCcEE
Confidence 32111222 2244454 678888888888777788
Q ss_pred EEe
Q 010933 494 FHY 496 (497)
Q Consensus 494 i~~ 496 (497)
||+
T Consensus 425 iW~ 427 (435)
T 4e54_B 425 IWS 427 (435)
T ss_dssp ECC
T ss_pred EEE
Confidence 886
No 40
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=291.21 Aligned_cols=290 Identities=11% Similarity=0.126 Sum_probs=216.1
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| +|||++|++++ |+++++||..............
T Consensus 31 ~~v~~~~f--s~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~------------------------------------ 71 (344)
T 4gqb_B 31 RQLEAARY--RSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPN------------------------------------ 71 (344)
T ss_dssp SEEEEEEE--CTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTC------------------------------------
T ss_pred CCEEEEEE--CCCCCEEEEEe-CCceEEeeceeeeeccccccCC------------------------------------
Confidence 77999999 78999888877 7889999743221111000000
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
...+... ..|...|.+++|+|++ .|++| .||.|++||+++.+ ...... ..+.+|...|++
T Consensus 72 ------------~~~~~~~--~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~-~~~~~~---~~~~~H~~~V~~ 132 (344)
T 4gqb_B 72 ------------EGFCSAG--VQTEAGVADLTWVGER-GILVASDSGAVELWELDENE-TLIVSK---FCKYEHDDIVST 132 (344)
T ss_dssp ------------GGGCSEE--EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTS-SCEEEE---EEEECCSSCEEE
T ss_pred ------------cceeeee--eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCC-ceeEee---ccccCCCCCEEE
Confidence 0001111 3566789999999986 56676 99999999998443 322211 124589999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEEe-cCeE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD-YMNL 346 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~-~~~i 346 (497)
++|+|++ ++|++++.|+.|++||+++++.+ ..+. +|...|++++|+|++. +|++++ |+.|
T Consensus 133 v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~----~~~~-------------~h~~~V~~~~~~~~~~~~l~s~s~D~~v 194 (344)
T 4gqb_B 133 VSVLSSG-TQAVSGSKDICIKVWDLAQQVVL----SSYR-------------AHAAQVTCVAASPHKDSVFLSCSEDNRI 194 (344)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred EEECCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEc-------------CcCCceEEEEecCCCCCceeeecccccc
Confidence 9999999 99999999999999999987654 4443 4678999999999985 677775 5999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
++||+++ +++...+..+.... .+++++|+|+ +++|++|+.||.|++||+++++.+ ..+.+|...
T Consensus 195 ~iwd~~~-~~~~~~~~~~~~~~-------------~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~-~~~~~h~~~ 259 (344)
T 4gqb_B 195 LLWDTRC-PKPASQIGCSAPGY-------------LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV-LSSAVHSQC 259 (344)
T ss_dssp EEEETTS-SSCEEECC----CC-------------CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC-EEEECCSSC
T ss_pred ccccccc-cceeeeeecceeec-------------cceeeeecCCCCcceEEeccCCcEEEEECCCCcEE-EEEcCCCCC
Confidence 9999987 77777665433211 1268999995 678899999999999999988555 889999999
Q ss_pred eeeeEeecCCCcccccccceeEeeccCc-eecC-CCCCcccccccCCCeEEEEEecCCC-EEEEEe-CCceEEEe
Q 010933 426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-SSGHHELSYNLSSKLLHLAWHPTTN-LIACAN-GNSLFFHY 496 (497)
Q Consensus 426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~-~~~~~~~~~~~~~~i~~l~~~p~~~-~la~~~-~~~~~i~~ 496 (497)
|++++|+|. ...+ |++|+.|+. ++|. .........+|...|++|+|+|+++ +|++++ ++.+++|.
T Consensus 260 v~~v~fsp~-g~~~-----lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 260 VTGLVFSPH-SVPF-----LASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEEEECSS-SSCC-----EEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEEccC-CCeE-----EEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 999999993 2245 899999999 9993 2234455678999999999999986 567777 66699996
No 41
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-37 Score=287.15 Aligned_cols=290 Identities=13% Similarity=0.130 Sum_probs=218.7
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
+.+..+.+|. ++|++++| +++ +|++++.|++|++|++..+...
T Consensus 5 ~~~~~~~~h~------------~~v~~~~~--s~~--~las~~~D~~i~lw~~~~~~~~--------------------- 47 (330)
T 2hes_X 5 NLIKSLKLYK------------EKIWSFDF--SQG--ILATGSTDRKIKLVSVKYDDFT--------------------- 47 (330)
T ss_dssp EEEEEEECCS------------SCEEEEEE--ETT--EEEEEESSSCEEEEECSSSCCE---------------------
T ss_pred ccceeeccCC------------Cceeeecc--CCC--EEEEEcCCCEEEEEEecCCCeE---------------------
Confidence 4577788999 89999999 455 9999999999999999764311
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeee-ccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 245 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~ 245 (497)
....+ ..+|...|.+++|+|++++|++| .|+.|++||++..
T Consensus 48 -------------------------------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~ 90 (330)
T 2hes_X 48 -------------------------------------LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEES 90 (330)
T ss_dssp -------------------------------------EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---
T ss_pred -------------------------------------EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccC
Confidence 11111 13499999999999999999999 9999999998621
Q ss_pred ------ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccc
Q 010933 246 ------DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 319 (497)
Q Consensus 246 ------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (497)
..... .+.+|...|.+++|+|++ ++|++++.|+.|++||++......+.... +
T Consensus 91 ~~~~~~~~~~~-------~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~-------------~ 149 (330)
T 2hes_X 91 ADRTFEMDLLA-------IIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISV-------------L 149 (330)
T ss_dssp ----CCCEEEE-------EEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEE-------------E
T ss_pred cCccccceeEE-------EEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEE-------------e
Confidence 12222 267899999999999999 99999999999999999643211111122 3
Q ss_pred ccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCC--CCE
Q 010933 320 TEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLH 394 (497)
Q Consensus 320 ~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~ 394 (497)
.+|...|.+++|+|++++|++++ |+.|++||... + +++..+.+|...+ ++++|+|+ +.+
T Consensus 150 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~~~ 213 (330)
T 2hes_X 150 QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGTV---------------WSSDFDKTEGVFR 213 (330)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCE---------------EEEEECCSSSSCE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CCeeEEEEccCCCCcE---------------EEEEecCCCCeeE
Confidence 45678899999999999999986 59999999875 4 5778888888765 78999998 779
Q ss_pred EEEEeCCCcEEEEEcCCCCc-------ceEEEec-cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC----C
Q 010933 395 FATGSYSNLLRIFSHGVGSA-------GGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG----H 461 (497)
Q Consensus 395 l~s~~~dg~i~vw~~~~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~----~ 461 (497)
|++|+.|+.|++||+..+.. ....+.. |..+|.+++|++ ++ . +++++.|+. ++|.... .
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~-~-----l~s~~~dg~v~iw~~~~~~~~~ 285 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NG-L-----IASVGADGVLAVYEEVDGEWKV 285 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT--TS-C-----EEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC--CC-E-----EEEEeCCCEEEEEEcCCCceEE
Confidence 99999999999999875421 2234444 899999999985 22 3 899999999 9994321 1
Q ss_pred c-ccccccCC-CeEEEEEec--CCCEEEEEeCCc-eEEEe
Q 010933 462 H-ELSYNLSS-KLLHLAWHP--TTNLIACANGNS-LFFHY 496 (497)
Q Consensus 462 ~-~~~~~~~~-~i~~l~~~p--~~~~la~~~~~~-~~i~~ 496 (497)
. .....|.. .|++++|+| ++++||+|+.|+ +++|+
T Consensus 286 ~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 286 FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 1 12346776 899999999 789999999555 99997
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3e-37 Score=283.60 Aligned_cols=256 Identities=14% Similarity=0.221 Sum_probs=200.4
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+|+|++||+|+.|+.|+|||+.+.. .+.+.++.+|.
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------------~~~~~~l~gH~------------ 53 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE------------ 53 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---------------------BCCCEEECCCS------------
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---------------------cEEEEEEcccc------------
Confidence 599999999999999999999999999999997542 14467889999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|++++|++..++.+|++++.|++|++||+.+++...
T Consensus 54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~------------------------------------------ 91 (297)
T 2pm7_B 54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ------------------------------------------ 91 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC------------------------------------------
T ss_pred CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE------------------------------------------
Confidence 89999999532348899999999999999998654211
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
+..+ .+|...|.+++|+|+ +..|++| .|+.|++||++........ .+.+|...|
T Consensus 92 ----------------~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~------~~~~h~~~v 148 (297)
T 2pm7_B 92 ----------------IAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGV 148 (297)
T ss_dssp ----------------CEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE------EEECCSSCE
T ss_pred ----------------EEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee------eeecccCcc
Confidence 1112 678999999999997 8899999 9999999999844322111 256899999
Q ss_pred EEEEEeCCC------------CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC
Q 010933 267 TSAEFHPIY------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 334 (497)
Q Consensus 267 ~~~~~~~~~------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 334 (497)
.+++|+|++ ..+|++++.|+.|++||+++++........ +.+|...|.+++|+|+
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~-------------l~~H~~~V~~v~~sp~ 215 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRDVAWSPT 215 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEEEEECCC
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE-------------ecCCCCceEEEEECCC
Confidence 999999972 168999999999999999876422111122 3457789999999998
Q ss_pred C---CEEEEEe-cCeEEEEecCCCCce--eeee--eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933 335 G---QHLLSRD-YMNLKLWDIRMDSTP--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 406 (497)
Q Consensus 335 g---~~l~~~~-~~~i~lwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v 406 (497)
+ .+|++++ |+.|++||++..... ...+ ..|... +++++|+|++++||+++.||.|+|
T Consensus 216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEETTSCEEE
T ss_pred CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc---------------EEEEEECCCCCEEEEEcCCCcEEE
Confidence 5 7888885 599999999752211 1222 233332 268999999999999999999999
Q ss_pred EEcCC
Q 010933 407 FSHGV 411 (497)
Q Consensus 407 w~~~~ 411 (497)
|+...
T Consensus 281 w~~~~ 285 (297)
T 2pm7_B 281 WKENL 285 (297)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 99864
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-36 Score=311.46 Aligned_cols=307 Identities=14% Similarity=0.199 Sum_probs=231.4
Q ss_pred ccCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
..|.+.|++++|+|++ ++|++|+.|++|+||++.+... ........+.+|.
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~------------------~~~~~~~~~~~h~---------- 430 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK------------------AYGVAQRRLTGHS---------- 430 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT------------------CSCEEEEEEECCS----------
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc------------------ccccccceecCCC----------
Confidence 3699999999999864 7999999999999999876432 0112345678999
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..|.+++| ++++++|++++.|++|++||+.++...
T Consensus 431 --~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~----------------------------------------- 465 (694)
T 3dm0_A 431 --HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVST----------------------------------------- 465 (694)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEE-----------------------------------------
T ss_pred --CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcce-----------------------------------------
Confidence 88999999 689999999999999999999876532
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
+.+ .+|...|.+++|+|+++.|++| .|++|++||.. ........ ....+|...|
T Consensus 466 -------------------~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~----~~~~~h~~~v 520 (694)
T 3dm0_A 466 -------------------RRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTIS----EGGEGHRDWV 520 (694)
T ss_dssp -------------------EEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEEC----SSTTSCSSCE
T ss_pred -------------------eEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceeec----cCCCCCCCcE
Confidence 222 6899999999999999999999 99999999987 33333221 1245789999
Q ss_pred EEEEEeCCC-CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933 267 TSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 344 (497)
Q Consensus 267 ~~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 344 (497)
.+++|+|++ ...|++++.|+.|++||+++++.. ..+ .+|...|++++|+|++++|++++ |+
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~----~~~-------------~~h~~~v~~v~~spdg~~l~sg~~Dg 583 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR----STL-------------AGHTGYVSTVAVSPDGSLCASGGKDG 583 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE----EEE-------------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE----EEE-------------cCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 999999986 247999999999999999886543 333 34678999999999999999986 59
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
.|++||+++ ++.+..+..+.. +.+++|+|++.+|++++ |+.|++||++++..+ ..+..+..
T Consensus 584 ~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~-~~~~~~~~ 644 (694)
T 3dm0_A 584 VVLLWDLAE-GKKLYSLEANSV----------------IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIV-EDLKVDLK 644 (694)
T ss_dssp BCEEEETTT-TEEEECCBCSSC----------------EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEE-EEECCCCC
T ss_pred eEEEEECCC-CceEEEecCCCc----------------EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCCh-hhhccccc
Confidence 999999986 777777655432 26899999998887766 456999999987443 44433322
Q ss_pred ceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933 425 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 496 (497)
Q Consensus 425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~ 496 (497)
......... + ......+.-.+++++|+|+|++|++|+.|+ ++||+
T Consensus 645 ~~~~~~~~~---~------------------------~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 645 AEAEKADNS---G------------------------PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp -------------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccccccc---c------------------------cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 110000000 0 000011122578999999999999999555 99997
No 44
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.4e-37 Score=291.98 Aligned_cols=301 Identities=16% Similarity=0.180 Sum_probs=226.0
Q ss_pred ccCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
..|.+.|++++|+|+| ++||+|+.||.|+|||+.+++. .....+.+|.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~h~---------- 118 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK---------------------TSFIQGMGPG---------- 118 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC---------------------EEEECCCSTT----------
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc---------------------ceeeecCCcC----------
Confidence 3589999999999999 9999999999999999987643 2223334688
Q ss_pred cccceeEEEEEecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 108 IEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 108 ~~~~i~~l~~~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..|.+++|+ | ++.+|++++.|+.|++||+.+......
T Consensus 119 --~~v~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------------------------- 156 (383)
T 3ei3_B 119 --DAITGMKFN--QFNTNQLFVSSIRGATTLRDFSGSVIQVF-------------------------------------- 156 (383)
T ss_dssp --CBEEEEEEE--TTEEEEEEEEETTTEEEEEETTSCEEEEE--------------------------------------
T ss_pred --CceeEEEeC--CCCCCEEEEEeCCCEEEEEECCCCceEEE--------------------------------------
Confidence 889999994 6 678999999999999999985332111
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
.. ...|...|.+++|+|+++.|++| .|+.|++||++ .. .... +.+|...
T Consensus 157 --------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-~~~~-------~~~h~~~ 206 (383)
T 3ei3_B 157 --------------------AK-TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-EIFK-------EKLHKAK 206 (383)
T ss_dssp --------------------EC-CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC-EEEE-------EECSSSC
T ss_pred --------------------ec-cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC-EEEE-------eccCCCc
Confidence 00 14566889999999999999999 99999999996 33 4433 5689999
Q ss_pred eEEEEEeCCCCc-EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEe-
Q 010933 266 ITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD- 342 (497)
Q Consensus 266 i~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~- 342 (497)
|.+++|+|++ . +|++++.|+.|++||+++.+........+ +|...+.+++|+| ++++|++++
T Consensus 207 v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 207 VTHAEFNPRC-DWLMATSSVDATVKLWDLRNIKDKNSYIAEM--------------PHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp EEEEEECSSC-TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--------------ECSSCEEEEEECTTTSCEEEEEES
T ss_pred EEEEEECCCC-CCEEEEEeCCCEEEEEeCCCCCcccceEEEe--------------cCCCceEEEEEcCCCCCEEEEEcC
Confidence 9999999999 6 99999999999999999854321111222 3567899999999 999999986
Q ss_pred cCeEEEEecCCCCceeeeeeeccccccc----ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 010933 343 YMNLKLWDIRMDSTPVATFKIHEHLRPK----LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 418 (497)
Q Consensus 343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 418 (497)
|+.|++||+++ ++....+..|...... +...+..+ ..+..++|+|++++ +|+.||.|++||+.+++.+ ..
T Consensus 272 d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~-~~ 345 (383)
T 3ei3_B 272 RNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPM--YDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV-HQ 345 (383)
T ss_dssp SSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSS--SSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE-EE
T ss_pred CCcEEEEECCC-CccccccccccccccccccceEEeccCC--CCceEEEecCCccc--ccCCCCeEEEEecCCCcee-ee
Confidence 59999999986 7777777766532110 00000000 01134677777777 7889999999999987443 33
Q ss_pred EeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEeC
Q 010933 419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 497 (497)
Q Consensus 419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~~ 497 (497)
+.+|. +...+..++|+|++++||+++++.+++|..
T Consensus 346 l~~~~--------------------------------------------~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 346 LRDPN--------------------------------------------AAGIISLNKFSPTGDVLASGMGFNILIWNR 380 (383)
T ss_dssp ECBTT--------------------------------------------BCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred ecCCC--------------------------------------------CCceEEEEEEecCccEEEEecCCcEEEEec
Confidence 33221 223566779999999999998888999973
No 45
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2e-36 Score=281.00 Aligned_cols=249 Identities=18% Similarity=0.237 Sum_probs=203.3
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|...|++++|+|+|++|++|+.|++|+|||+.+++ .+..+.+|.
T Consensus 63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~-----------------------~~~~~~~h~------------ 107 (319)
T 3frx_A 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE-----------------------TYQRFVGHK------------ 107 (319)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS------------
T ss_pred CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC-----------------------eeEEEccCC------------
Confidence 599999999999999999999999999999998874 367788999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| ++++.+|++++.|++|++||+....
T Consensus 108 ~~v~~~~~--~~~~~~l~s~s~D~~i~vwd~~~~~--------------------------------------------- 140 (319)
T 3frx_A 108 SDVMSVDI--DKKASMIISGSRDKTIKVWTIKGQC--------------------------------------------- 140 (319)
T ss_dssp SCEEEEEE--CTTSCEEEEEETTSCEEEEETTSCE---------------------------------------------
T ss_pred CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCe---------------------------------------------
Confidence 88999999 6889999999999999999986422
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC------CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD------CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
+..+ .+|...|.++.++|. +..++++ .|+.|++||++ ..+.... +.+|
T Consensus 141 ----------------~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~-------~~~h 195 (319)
T 3frx_A 141 ----------------LATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QFQIEAD-------FIGH 195 (319)
T ss_dssp ----------------EEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT-TTEEEEE-------ECCC
T ss_pred ----------------EEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC-cchhhee-------ecCC
Confidence 2222 688999999999985 4478888 99999999998 4444443 6789
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 342 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 342 (497)
...|.+++|+|++ .+|++++.||.|++||+++++.. ..+.. ...+.+++|+|++.+|+++.
T Consensus 196 ~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 196 NSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSA--------------QDEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp CSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------CSCEEEEEECSSSSEEEEEE
T ss_pred CCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC--------------CCcEEEEEEcCCCCEEEEEc
Confidence 9999999999999 99999999999999999987654 33332 25799999999999999998
Q ss_pred cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 343 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
++.+++|++.. ...+..+..+...... .....+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 257 ~~~i~v~~~~~-~~~~~~~~~~~~~~~~-------~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 257 ATGIKVFSLDP-QYLVDDLRPEFAGYSK-------AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TTEEEEEEETT-EEEEEEECCCCTTCCG-------GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCcEEEEeCc-CeeeeccCcccccccc-------CcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 88899999975 5555555433211000 00011368999999999999999999999998764
No 46
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-36 Score=287.41 Aligned_cols=302 Identities=14% Similarity=0.151 Sum_probs=236.3
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
|.++|++++|+|+|++||+|+.|+.|++||+.+++ ++.+..+.+|. .
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---------------------~~~~~~~~~h~------------~ 53 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---------------------WVQVHELKEHN------------G 53 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE---------------------EEEEEEEECCS------------S
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---------------------EEeeeeecCCC------------C
Confidence 78999999999999999999999999999998763 13577788998 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.+++| +|++++|++++.|+.|++||+.+++....
T Consensus 54 ~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------------------------------------ 89 (372)
T 1k8k_C 54 QVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPT------------------------------------------ 89 (372)
T ss_dssp CEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEE------------------------------------------
T ss_pred cccEEEE--eCCCCEEEEEcCCCeEEEEECCCCeeeee------------------------------------------
Confidence 8999999 57899999999999999999977653221
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce--eeEEeecCCCccCCCCCCeE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~i~ 267 (497)
.. ...|...|.+++|+|+++.|+++ .|+.|++||++.... .... ....|...|.
T Consensus 90 ----------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~~~i~ 146 (372)
T 1k8k_C 90 ----------------LV-ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH------IKKPIRSTVL 146 (372)
T ss_dssp ----------------EE-CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE------ECTTCCSCEE
T ss_pred ----------------EE-eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee------eecccCCCee
Confidence 11 15788899999999999999999 999999999984432 1222 1467899999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc-eecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 345 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~ 345 (497)
+++|+|++ .+|++++.||.|++||++.......... .+............+.+|...+.+++|+|++++|++++ |+.
T Consensus 147 ~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 225 (372)
T 1k8k_C 147 SLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 225 (372)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred EEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE
Confidence 99999999 9999999999999999864322110000 00000000111122446778999999999999999986 599
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC--CCc---------
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV--GSA--------- 414 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~--~~~--------- 414 (497)
|++||+++ ++++..+..|...+ .+++|+|++++|++| .|+.|++|++.+ +..
T Consensus 226 i~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~ 288 (372)
T 1k8k_C 226 VCLADADK-KMAVATLASETLPL---------------LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVP 288 (372)
T ss_dssp EEEEEGGG-TTEEEEEECSSCCE---------------EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC
T ss_pred EEEEECCC-CceeEEEccCCCCe---------------EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcc
Confidence 99999986 88899998887654 689999999988888 899999999987 310
Q ss_pred ----------------------ce------EEE-eccCcceeeeEeecCCCc---ccccccceeEeeccCc-eec
Q 010933 415 ----------------------GG------ITV-EAGKNENRKPILQAAPRA---RRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 415 ----------------------~~------~~~-~~~~~~v~~~~~~~~~~~---~~~~~~~l~~~~~d~~-~iw 456 (497)
.. ..+ .+|..+|+++++.+. ++ .. |++|+.||. ++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~g~~~~~-----l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG-GKAKCSQ-----FCTTGMDGGMSIW 357 (372)
T ss_dssp --------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES-TTTSCSE-----EEEEETTSEEEEE
T ss_pred ccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC-CCcceee-----EEEecCCCceEEE
Confidence 00 223 489999999997764 44 55 999999999 999
No 47
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-35 Score=289.83 Aligned_cols=305 Identities=14% Similarity=0.229 Sum_probs=247.3
Q ss_pred cCCcce-EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I-~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+|.+.| +|+. ++|++||+|+.||.|++||+.+++. +..+.+|.
T Consensus 116 ~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~-----------------------~~~~~~h~----------- 159 (445)
T 2ovr_B 116 GHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKC-----------------------LRTLVGHT----------- 159 (445)
T ss_dssp CSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCE-----------------------EEECCCCS-----------
T ss_pred ccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcE-----------------------EEEEcCCC-----------
Confidence 587765 5554 5689999999999999999987743 67788999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|.+++|. +..+++++.|+.|++||+.+++..
T Consensus 160 -~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~------------------------------------------ 192 (445)
T 2ovr_B 160 -GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECI------------------------------------------ 192 (445)
T ss_dssp -SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEE------------------------------------------
T ss_pred -CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEE------------------------------------------
Confidence 899999993 469999999999999999876632
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
..+ .+|...|.+++++ ++.+++| .|+.|++||++ .++.... +.+|...|.
T Consensus 193 ------------------~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~-~~~~~~~-------~~~~~~~v~ 243 (445)
T 2ovr_B 193 ------------------HTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE-TGQCLHV-------LMGHVAAVR 243 (445)
T ss_dssp ------------------EEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS-SCCEEEE-------EECCSSCEE
T ss_pred ------------------EEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC-CCcEEEE-------EcCCcccEE
Confidence 222 6899999999995 5678888 99999999999 4555544 568999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i 346 (497)
++++ ++ .++++++.||.|++||+++++.. ..+. +|...+.++.| ++.++++++ |+.|
T Consensus 244 ~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~----~~~~-------------~~~~~v~~~~~--~~~~l~~~~~d~~i 301 (445)
T 2ovr_B 244 CVQY--DG-RRVVSGAYDFMVKVWDPETETCL----HTLQ-------------GHTNRVYSLQF--DGIHVVSGSLDTSI 301 (445)
T ss_dssp EEEE--CS-SCEEEEETTSCEEEEEGGGTEEE----EEEC-------------CCSSCEEEEEE--CSSEEEEEETTSCE
T ss_pred EEEE--CC-CEEEEEcCCCEEEEEECCCCcEe----EEec-------------CCCCceEEEEE--CCCEEEEEeCCCeE
Confidence 9999 56 78999999999999999987544 3333 35578999988 788899885 5999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec---cC
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA---GK 423 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~---~~ 423 (497)
++||+++ ++++..+.+|...+ .++.+ ++++|++|+.||.|++||+.+++.. ..+.. |.
T Consensus 302 ~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~ 362 (445)
T 2ovr_B 302 RVWDVET-GNCIHTLTGHQSLT---------------SGMEL--KDNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQ 362 (445)
T ss_dssp EEEETTT-CCEEEEECCCCSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCCEE-EEECSTTSCS
T ss_pred EEEECCC-CCEEEEEcCCcccE---------------EEEEE--eCCEEEEEeCCCeEEEEECCCCcEE-EEEccCCCCC
Confidence 9999987 88888888887653 34444 6789999999999999999987554 67775 88
Q ss_pred cceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccc-----cccCCCeEEEEEecCCCEEEEEeCCc----
Q 010933 424 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELS-----YNLSSKLLHLAWHPTTNLIACANGNS---- 491 (497)
Q Consensus 424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~-----~~~~~~i~~l~~~p~~~~la~~~~~~---- 491 (497)
.++.++++.+ .. +++|+.||. ++| ..++..... ..+...|.+++|+|++.+||+|+.|+
T Consensus 363 ~~v~~~~~~~----~~-----l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 363 SAVTCLQFNK----NF-----VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 433 (445)
T ss_dssp SCEEEEEECS----SE-----EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred CCEEEEEECC----CE-----EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCcc
Confidence 8999999953 34 899999999 999 334433333 46788999999999999999999776
Q ss_pred -eEEEe
Q 010933 492 -LFFHY 496 (497)
Q Consensus 492 -~~i~~ 496 (497)
++||+
T Consensus 434 ~l~v~d 439 (445)
T 2ovr_B 434 KLLVLD 439 (445)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 78875
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-35 Score=277.30 Aligned_cols=281 Identities=14% Similarity=0.187 Sum_probs=231.0
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc--ccCccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDYLKSL 106 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~~ 106 (497)
..|.+.|++++|+|+|++|++++ ||.|++||+.+++. ......+. +|.
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~--------------------~~~~~~~~~~~~~--------- 97 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN--------------------KSPVSQLDCLNRD--------- 97 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC--------------------CSCSEEEECSCTT---------
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc--------------------eeeeecccccCCC---------
Confidence 46899999999999999999999 99999999987642 01122232 566
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..|.+++| +|++++|++++.|+.|++||+.+++...
T Consensus 98 ---~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~--------------------------------------- 133 (337)
T 1gxr_A 98 ---NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRI--------------------------------------- 133 (337)
T ss_dssp ---SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EE---------------------------------------
T ss_pred ---CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcce---------------------------------------
Confidence 88999999 6899999999999999999998765211
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
... +..|...|.+++|+|+++.++++ .|+.|++||++ .++.... +..|...
T Consensus 134 -------------------~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~-------~~~~~~~ 185 (337)
T 1gxr_A 134 -------------------KAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQGHTDG 185 (337)
T ss_dssp -------------------EEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCSSC
T ss_pred -------------------eee-cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeee-------eecccCc
Confidence 111 26788899999999999999999 99999999998 5555554 5679999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 344 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 344 (497)
+.+++|+|++ .+|++++.|+.|++||+++++.. ..+. +...+.+++|+|+++++++++ ++
T Consensus 186 i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~v~~~~~s~~~~~l~~~~~~~ 246 (337)
T 1gxr_A 186 ASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQHD--------------FTSQIFSLGYCPTGEWLAVGMESS 246 (337)
T ss_dssp EEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE--------------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eeec--------------CCCceEEEEECCCCCEEEEEcCCC
Confidence 9999999999 99999999999999999987643 2222 246799999999999999986 49
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
.|++||++. .+ ...+..|...+ .+++|+|++++|++++.||.|++|++.+++.. ....|..
T Consensus 247 ~i~~~~~~~-~~-~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~ 307 (337)
T 1gxr_A 247 NVEVLHVNK-PD-KYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESS 307 (337)
T ss_dssp CEEEEETTS-SC-EEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEECSS
T ss_pred cEEEEECCC-CC-eEEEcCCccce---------------eEEEECCCCCEEEEecCCCcEEEEECCCCeEE--EEecCCC
Confidence 999999985 44 34556666543 69999999999999999999999999987554 4456889
Q ss_pred ceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
++.++++++ ++.. +++++.|+. ++|
T Consensus 308 ~v~~~~~s~--~~~~-----l~~~~~dg~i~iw 333 (337)
T 1gxr_A 308 SVLSCDISV--DDKY-----IVTGSGDKKATVY 333 (337)
T ss_dssp CEEEEEECT--TSCE-----EEEEETTSCEEEE
T ss_pred cEEEEEECC--CCCE-----EEEecCCCeEEEE
Confidence 999999998 5666 899999998 888
No 49
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-36 Score=314.91 Aligned_cols=397 Identities=9% Similarity=0.061 Sum_probs=249.8
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|...|++++|+| |++||+++.|+.|+|||+.+++. +..+. |.
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~-----------------------~~~~~-~~----------- 98 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV-----------------------LTTVF-VP----------- 98 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE-----------------------EEEEE-CS-----------
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE-----------------------EEEEc-CC-----------
Confidence 35788999999999 88999999999999999987643 34443 55
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCC-cccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS-FAHGYHLEWT 187 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 187 (497)
+.|++++| +|++.+|++|+.||.|++||+.++++........... ......+.+.+....+.++ ...++.+..
T Consensus 99 -~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~--~~~~~~h~~~V~sl~~sp~~~~~l~~g~~- 172 (902)
T 2oaj_A 99 -GKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS--SFFPAARLSPIVSIQWNPRDIGTVLISYE- 172 (902)
T ss_dssp -SCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH--HTCSSSCCCCCCEEEEETTEEEEEEEECS-
T ss_pred -CCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceecccccc--ccccccCCCCeEEEEEccCCCCEEEEEeC-
Confidence 77999999 6899999999999999999998876531110000000 0000112233444444443 234454443
Q ss_pred cCcceEEEeecCCccceeeeeeccC------------------CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCcee
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHA------------------HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 248 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 248 (497)
++.+ +||+... ++++.+ .. |...|.+++|+|+|+.|++| .|+.|++||+++ ++.
T Consensus 173 -dg~v-lWd~~~~---~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~-g~~ 245 (902)
T 2oaj_A 173 -YVTL-TYSLVEN---EIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS-GHM 245 (902)
T ss_dssp -SCEE-EEETTTT---EEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT-CCE
T ss_pred -CCcE-EEECCCC---ceEEEE-ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CcE
Confidence 7889 9999854 444444 33 35789999999999999999 999999999974 333
Q ss_pred eEEeecCCCccC-----------CCCCCeEEEEEeC----CCCcEEEE--------------------------------
Q 010933 249 FNIVDMKPSNMD-----------DLTEVITSAEFHP----IYCNLLAY-------------------------------- 281 (497)
Q Consensus 249 ~~~~~~~~~~~~-----------~~~~~i~~~~~~~----~~~~~l~~-------------------------------- 281 (497)
+....+...... .|...|.+++|++ ++..+|++
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 221000000000 1222344444421 11012222
Q ss_pred --------------------------------------------EeCCCeEEEEEccCCcccccc---------------
Q 010933 282 --------------------------------------------SSSRGFVRLVDMRQSALCDHS--------------- 302 (497)
Q Consensus 282 --------------------------------------------~~~dg~i~v~d~~~~~~~~~~--------------- 302 (497)
++.||.|++||+.++..+...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 222344444444332111000
Q ss_pred ----------------------cceecccc-------cccCC---------------------c---ccc---------c
Q 010933 303 ----------------------ARILRDAA-------ESHGS---------------------K---SFF---------T 320 (497)
Q Consensus 303 ----------------------~~~~~~~~-------~~~~~---------------------~---~~~---------~ 320 (497)
...+.+|. ..+.. . ..+ .
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 00000000 00000 0 000 1
Q ss_pred cccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCC--------------------------------------------
Q 010933 321 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDS-------------------------------------------- 355 (497)
Q Consensus 321 ~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~-------------------------------------------- 355 (497)
+|...|.+++|+|+|++||+|+ |+.|+|||+....
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 6778999999999999999986 5999999997521
Q ss_pred ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce----EEEe-ccCcceeeeE
Q 010933 356 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG----ITVE-AGKNENRKPI 430 (497)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~----~~~~-~~~~~v~~~~ 430 (497)
+++..+.+|...+ ++++|+||| +||+|+.|++|+|||++++..+. ..+. +|.+.|++++
T Consensus 566 ~~~~~l~~h~~~V---------------~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~ 629 (902)
T 2oaj_A 566 MPSTAVHANKGKT---------------SAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIE 629 (902)
T ss_dssp EEEEEECCCSCSE---------------EEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEE
T ss_pred ceeEEEEcCCCcE---------------EEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEE
Confidence 1245556666544 799999999 99999999999999987763321 1232 8899999999
Q ss_pred ee-----cC-CCcccccccceeEeeccCc-eecC-----CCCCccccccc-----CCCeEEEE-Ee--------------
Q 010933 431 LQ-----AA-PRARRSSLSNLTRGLYRQA-HENS-----SSGHHELSYNL-----SSKLLHLA-WH-------------- 478 (497)
Q Consensus 431 ~~-----~~-~~~~~~~~~~l~~~~~d~~-~iw~-----~~~~~~~~~~~-----~~~i~~l~-~~-------------- 478 (497)
|+ ++ .+++. |++|+.|+. ++|. .++....+.+| ..+|..++ |+
T Consensus 630 Fs~~~~~~Dg~~~~~-----l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~ 704 (902)
T 2oaj_A 630 FVIMEYGDDGYSSIL-----MVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKM 704 (902)
T ss_dssp EEEEECTTSSSEEEE-----EEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHH
T ss_pred EEEEecCCCCCcceE-----EEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHH
Confidence 99 73 12456 999999999 9993 33333344444 46777776 76
Q ss_pred --------cCCCEEEEEeCCceEEEe
Q 010933 479 --------PTTNLIACANGNSLFFHY 496 (497)
Q Consensus 479 --------p~~~~la~~~~~~~~i~~ 496 (497)
+++.+|| ++++.+++|+
T Consensus 705 ~~l~~~~~~~~~~l~-~~~~~ir~~~ 729 (902)
T 2oaj_A 705 QNLSKGLCIPGIVLI-TGFDDIRLIT 729 (902)
T ss_dssp HGGGGTCCCCEEEEE-ECSSEEEEEC
T ss_pred hccCCCCCCCeEEEE-EeccceEEEe
Confidence 4444444 4488899996
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3e-36 Score=284.06 Aligned_cols=251 Identities=18% Similarity=0.249 Sum_probs=193.7
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|...|++++|+|++++| +++.||.|+|||+.+++. .........+|+
T Consensus 91 ~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~-------------------~~~~~~~~~~h~----------- 139 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKES-------------------LLVNKFAKYEHD----------- 139 (357)
T ss_dssp EECSSCEEEEEEETTTEEE-EEETTSCEEEC---------------------------CCCCEEECCCS-----------
T ss_pred CCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccce-------------------eEEEeeccCCCC-----------
Confidence 4688899999999998655 577899999999987643 011122345787
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|++++| +|++++|++++.|+.|++||+.+++..
T Consensus 140 -~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~~~~------------------------------------------ 174 (357)
T 4g56_B 140 -DIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQKAVL------------------------------------------ 174 (357)
T ss_dssp -SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTTEEE------------------------------------------
T ss_pred -CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEE------------------------------------------
Confidence 88999999 689999999999999999999876633
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
..+ .+|...|.+++|++++. .++++ .|+.|++||++. ++.... .....+...+
T Consensus 175 ------------------~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~-----~~~~~~~~~v 229 (357)
T 4g56_B 175 ------------------KSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATR-----IDFCASDTIP 229 (357)
T ss_dssp ------------------EEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCB-----CCCTTCCSCE
T ss_pred ------------------EEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeee-----eeeccccccc
Confidence 223 78999999999999875 67777 999999999984 333322 1245677889
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEEe-cC
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YM 344 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~-~~ 344 (497)
.+++|+|++..+|++++.|+.|++||+++++.. ..+.. |...|++++|+|++ ++|++|+ |+
T Consensus 230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~~~~-------------~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 230 TSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QTSAV-------------HSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp EEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EEECC-------------CSSCEEEEEECSSSSCCEEEEETTS
T ss_pred cchhhhhcccceEEEeecccceeEEECCCCcEe----EEEec-------------cceeEEEEEEcCCCCCEEEEEeCCC
Confidence 999999986579999999999999999987654 34433 56789999999987 5788875 59
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
.|+|||+++ ++++..+ +|...+ ++++|+| ++++|++++.||+|++|++.+...
T Consensus 293 ~i~iwd~~~-~~~~~~~-~H~~~V---------------~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 293 TVAVLDADF-SEVFRDL-SHRDFV---------------TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp CEEEECTTS-CEEEEEC-CCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEEEECCC-CcEeEEC-CCCCCE---------------EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 999999986 6666554 677654 7999998 899999999999999999976533
No 51
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.7e-37 Score=283.39 Aligned_cols=256 Identities=14% Similarity=0.183 Sum_probs=198.6
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ..+..+.+|.
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------~~~~~l~gH~------------ 57 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------ILIADLRGHE------------ 57 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------EEEEEEECCS------------
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------EEEEEEcCCC------------
Confidence 6999999999999999999999999999999987532 3466788999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|++++|++..++.+|++++.|++|++||+.++...
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~------------------------------------------- 94 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE------------------------------------------- 94 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC-------------------------------------------
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce-------------------------------------------
Confidence 8999999953235789999999999999999865421
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
+...+ .+|...|.+++|+|+ +.+|++| .|+.|++||++........ ..+.+|...+
T Consensus 95 ---------------~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~-----~~~~~h~~~v 153 (316)
T 3bg1_A 95 ---------------KSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK-----KINNAHTIGC 153 (316)
T ss_dssp ---------------EEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC-----CBTTSSSSCB
T ss_pred ---------------EEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee-----eeeccccCCc
Confidence 11222 689999999999997 7899999 9999999999843222110 2367899999
Q ss_pred EEEEEeCCC----------------CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933 267 TSAEFHPIY----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 267 ~~~~~~~~~----------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
.+++|+|+. ..+|++++.|+.|++||++..... ..... +.+|...|.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~-------------l~~h~~~V~~v~ 219 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEEQK-------------LEAHSDWVRDVA 219 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEEEC-------------CBCCSSCEEEEE
T ss_pred ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-ceeee-------------cccCCCceEEEE
Confidence 999999972 168999999999999999754211 00122 345778999999
Q ss_pred EeeCC----CEEEEEe-cCeEEEEecCCCC---ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 331 FANDG----QHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 331 ~s~~g----~~l~~~~-~~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
|+|++ ++|++++ |+.|++|+++... .....+..|...+ ++++|+|++++||+++.|+
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~v~~sp~g~~las~~~D~ 284 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WHVSWSITANILAVSGGDN 284 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EEEEECTTTCCEEEEESSS
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EEEEEcCCCCEEEEEcCCC
Confidence 99986 7899885 5999999987511 1223445565543 7999999999999999999
Q ss_pred cEEEEEcCC
Q 010933 403 LLRIFSHGV 411 (497)
Q Consensus 403 ~i~vw~~~~ 411 (497)
.|++|+...
T Consensus 285 ~v~lw~~~~ 293 (316)
T 3bg1_A 285 KVTLWKESV 293 (316)
T ss_dssp CEEEEEECT
T ss_pred eEEEEEECC
Confidence 999999864
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=280.87 Aligned_cols=286 Identities=12% Similarity=0.142 Sum_probs=235.6
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.+.|++++|+|+|++||+|+.||.|++||+.+++. +..+.+|.
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----------------------~~~~~~h~----------- 74 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-----------------------LGTLDGHT----------- 74 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-----------------------EEEECCCS-----------
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-----------------------hhhhhhcC-----------
Confidence 36999999999999999999999999999999987643 67788898
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++| +|++.+|++++.|+.|++||+.+++...
T Consensus 75 -~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------------------------------- 110 (369)
T 3zwl_B 75 -GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVA----------------------------------------- 110 (369)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEE-----------------------------------------
T ss_pred -CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------------------------------
Confidence 88999999 6889999999999999999998766332
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCccCceeeEEeecC---CCcc
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMK---PSNM 259 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~---~~~~ 259 (497)
.+ .+...+.+++|+|+++.++++ .+ +.|++||+............. ...+
T Consensus 111 -------------------~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 111 -------------------TW--KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp -------------------EE--ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred -------------------Ee--ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 22 367789999999999999998 88 999999998443211111000 0123
Q ss_pred CCCCC--CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC-cccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933 260 DDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 336 (497)
Q Consensus 260 ~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 336 (497)
..|.. .+.+++|+|++ .+|++++.||.|++||+++. +.. ..+. .|...|.+++|+|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~~~-------------~~~~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV----DSID-------------LHEKSISDMQFSPDLT 231 (369)
T ss_dssp ECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE----EEEE-------------CCSSCEEEEEECTTSS
T ss_pred cCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE----EEEe-------------cCCCceeEEEECCCCC
Confidence 34555 89999999999 99999999999999999873 322 3333 3557899999999999
Q ss_pred EEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-------------
Q 010933 337 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN------------- 402 (497)
Q Consensus 337 ~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg------------- 402 (497)
+|++++ ++.|++||+++ ++.+..+..... + ..++|+|+++++++++.++
T Consensus 232 ~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~-~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 232 YFITSSRDTNSFLVDVST-LQVLKKYETDCP-L---------------NTAVITPLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp EEEEEETTSEEEEEETTT-CCEEEEEECSSC-E---------------EEEEECSSSSEEEEEECCC-------------
T ss_pred EEEEecCCceEEEEECCC-CceeeeecCCCC-c---------------eeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence 999986 59999999986 787877773332 2 6899999999999999988
Q ss_pred -cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 403 -LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 403 -~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.+++||..+++.. ..+.+|...|.+++|+| ++.+ |++++.|+. ++|
T Consensus 295 ~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~--~~~~-----l~s~~~dg~v~iw 342 (369)
T 3zwl_B 295 FEARFYHKIFEEEI-GRVQGHFGPLNTVAISP--QGTS-----YASGGEDGFIRLH 342 (369)
T ss_dssp CEEEEEETTTCCEE-EEEECCSSCEEEEEECT--TSSE-----EEEEETTSEEEEE
T ss_pred ceeEEEecCCCcch-hheecccCcEEEEEECC--CCCE-----EEEEcCCCeEEEE
Confidence 8999999988554 88899999999999999 6666 999999999 999
No 53
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=288.36 Aligned_cols=343 Identities=14% Similarity=0.151 Sum_probs=236.1
Q ss_pred cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.|.+.|++++|+| +|++||+|+.||.|+|||+.+.+.. ..++....+ +|.
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-----------------~~~~~~~~~-~h~----------- 111 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-----------------EVYSSSLTY-DCS----------- 111 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-----------------CCCSCSEEE-ECS-----------
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-----------------cccceeeec-cCC-----------
Confidence 5789999999999 9999999999999999998762110 001112222 476
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecC---chheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..|.+++| ++++.+|++++.|+.|++||+. .++.......
T Consensus 112 -~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---------------------------------- 154 (437)
T 3gre_A 112 -STVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC---------------------------------- 154 (437)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE----------------------------------
T ss_pred -CCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeecccc----------------------------------
Confidence 88999999 6789999999999999999995 4433221100
Q ss_pred cccCcceEEEeecCCccceeeeee-ccC--CCCCeeEEE--eCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCcc
Q 010933 186 WTENMATKIANVGNSVHARCQKVY-PHA--HDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--h~~~v~~~~--~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 259 (497)
.++..+ +.. +...+.++. +++++..|++| .|+.|++||++ .++.... +
T Consensus 155 ------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~-------~ 208 (437)
T 3gre_A 155 ------------------ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TLERLQI-------I 208 (437)
T ss_dssp ------------------EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TCCEEEE-------E
T ss_pred ------------------ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeEE-------E
Confidence 011111 122 667788888 57899999999 99999999998 4555544 3
Q ss_pred CC--CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe----e
Q 010933 260 DD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA----N 333 (497)
Q Consensus 260 ~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s----~ 333 (497)
.. |...|++++|+|++ .+|++++.||.|++||+++++.. ..+.. .|...|.+++|+ |
T Consensus 209 ~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~------------~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWSF------------GDHAPITHVEVCQFYGK 271 (437)
T ss_dssp ECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEBC------------TTCEEEEEEEECTTTCT
T ss_pred ccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEec------------CCCCceEEEEeccccCC
Confidence 44 88999999999999 99999999999999999987544 33321 234679999665 4
Q ss_pred CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccC-----------CCCCccceeEEEEcCCCCEEEEEeCC
Q 010933 334 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY-----------NNDSIFDKFECSVSGDGLHFATGSYS 401 (497)
Q Consensus 334 ~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~s~~~~~l~s~~~d 401 (497)
++.+|++++ |+.|++||+++ ++.+..+.+|...+....... .......+++++|+ ++++|++|+.|
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d 349 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT 349 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG
T ss_pred CccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC
Confidence 677999985 59999999986 888888887765443221100 00122234789999 78999999999
Q ss_pred CcEEEEEcCCCCcceEEEeccCcc---eeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEe
Q 010933 402 NLLRIFSHGVGSAGGITVEAGKNE---NRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWH 478 (497)
Q Consensus 402 g~i~vw~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~ 478 (497)
|.|++||+.+++.. ..+.+|... .....+.+. ..+ ++.. .+ . ...........|...|++++|+
T Consensus 350 ~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~-~~--~--~~~~~~~~~~~h~~~I~~i~~~ 416 (437)
T 3gre_A 350 SSIVMFSLNELSSS-KAVISPSRFSDVFIPTQVTAN--LTM-----LLRK-MK--R--TSTHSVDDSLYHHDIINSISTC 416 (437)
T ss_dssp TEEEEEETTCGGGC-EEEECC--CCCEEEEEEEETT--EEE-----EEEE-CC-----------------CCCEEEEEEE
T ss_pred CeEEEEECCCcccc-eEEecccccCceEEEEEeecc--eEE-----EEEe-cc--c--ccccccCcccccccceeeEeee
Confidence 99999999988554 777776443 222223221 111 1111 00 0 1111223344688999999999
Q ss_pred cC--CCEEEEEeCC-ceEEEe
Q 010933 479 PT--TNLIACANGN-SLFFHY 496 (497)
Q Consensus 479 p~--~~~la~~~~~-~~~i~~ 496 (497)
++ +.+|++|+.+ .++||+
T Consensus 417 ~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 417 EVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ESSSSEEEEEEETTSCEEEEC
T ss_pred ccCCceEEEEEcCCceEEEeC
Confidence 99 7799999955 499985
No 54
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.6e-37 Score=291.23 Aligned_cols=262 Identities=12% Similarity=0.133 Sum_probs=196.1
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
+.++|++++|+|+|++||+|+.|+.|+|||+.++. ++....+.+|. .
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~---------------------~~~~~~~~~h~------------~ 56 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG---------------------WKHARTFSDHD------------K 56 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE---------------------EEECCCBCCCS------------S
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc---------------------eEEEEEEecCC------------c
Confidence 46799999999999999999999999999998762 13467788998 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.+++| +|++++|++++.|+.|++||+.+++..
T Consensus 57 ~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~-------------------------------------------- 90 (377)
T 3dwl_C 57 IVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTW-------------------------------------------- 90 (377)
T ss_dssp CEEEEEE--CTTTCCEEEEETTSSEEEC------CC--------------------------------------------
T ss_pred eEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCce--------------------------------------------
Confidence 9999999 688999999999999999999876510
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce--eeEEeecCCCccCC-CCCCe
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDD-LTEVI 266 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~-~~~~i 266 (497)
.+... +.+|...|.+++|+|+++.|++| .|+.|++||++.... .... +.. |...|
T Consensus 91 -------------~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~h~~~v 149 (377)
T 3dwl_C 91 -------------KQTLV-LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH-------LKRPLRSTI 149 (377)
T ss_dssp -------------CCEEE-CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE-------ECSSCCSCE
T ss_pred -------------eeeeE-ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE-------eecccCCCe
Confidence 01111 26889999999999999999999 999999999984332 2333 445 99999
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccc-cccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 344 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 344 (497)
.+++|+|++ .+|++++.|+.|++||++.+.............. ........+ +|...|.+++|+|++++|++++ |+
T Consensus 150 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~ 227 (377)
T 3dwl_C 150 LSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS 227 (377)
T ss_dssp EEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT
T ss_pred EEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC
Confidence 999999999 9999999999999999975442211000000000 000011123 6788999999999999999986 59
Q ss_pred eEEEEecCCCCce----eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 345 NLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 345 ~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
.|++||+.+ ++. +..+.+|...+ ++++|+|++++|++|+.|+.+ +|+...
T Consensus 228 ~i~iwd~~~-~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 228 SVTIAYPSA-PEQPPRALITVKLSQLPL---------------RSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEC-CEECS-TTSCEEECCCEECSSSCE---------------EEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred cEEEEECCC-CCCcceeeEeecCCCCce---------------EEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 999999987 655 77888887754 699999999999999877666 666653
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.6e-35 Score=287.01 Aligned_cols=315 Identities=12% Similarity=0.227 Sum_probs=242.4
Q ss_pred cCCcc-eEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~-I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+|.+. +.|+.| ++++|++|+.||.|++||+.+++ .+..+.+|.
T Consensus 119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~----------- 162 (464)
T 3v7d_B 119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD----------- 162 (464)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS-----------
T ss_pred CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC-----------
Confidence 57776 467666 56799999999999999998764 377788999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|.+++| ++++ .+++++.||+|++||+.+++..
T Consensus 163 -~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~------------------------------------------ 196 (464)
T 3v7d_B 163 -GGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGCCT------------------------------------------ 196 (464)
T ss_dssp -SCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTEEE------------------------------------------
T ss_pred -cCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCcEE------------------------------------------
Confidence 99999999 4565 9999999999999999876632
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeC--CCCCEEEEE-cCCeEEEEeCccCceeeEEeecC----------
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMK---------- 255 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~---------- 255 (497)
..+ .+|...|.+++|+ ++++.+++| .|+.|++||++........ ...
T Consensus 197 ------------------~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 197 ------------------HVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH-GEEHDYPLVFHTP 256 (464)
T ss_dssp ------------------EEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-------CCSSEEESCG
T ss_pred ------------------EEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc-cccCCcceEeecc
Confidence 222 6899999999998 578899999 9999999999843321110 000
Q ss_pred ------CCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933 256 ------PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 329 (497)
Q Consensus 256 ------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 329 (497)
...+.+|...+.++ ++++ .++++++.|+.|++||+++++.. ..+. +|...+.++
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~~~~~~----~~~~-------------~~~~~v~~~ 316 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMKCL----YILS-------------GHTDRIYST 316 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEEEE
T ss_pred CCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECCCCcEE----EEec-------------CCCCCEEEE
Confidence 01256788888877 5667 89999999999999999987644 3333 356789999
Q ss_pred EEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 330 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 330 ~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
+|+|+++++++|+ |+.|++||+++ ++++..+.+|...+ .+++|+ +++|++++.||.|++||
T Consensus 317 ~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~--~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 317 IYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALV---------------GLLRLS--DKFLVSAAADGSIRGWD 378 (464)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcE---------------EEEEEc--CCEEEEEeCCCcEEEEE
Confidence 9999999999986 49999999987 88999999988765 678886 58999999999999999
Q ss_pred cCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCccc-ccccCCCeEEEEEecCCCEE
Q 010933 409 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHEL-SYNLSSKLLHLAWHPTTNLI 484 (497)
Q Consensus 409 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~-~~~~~~~i~~l~~~p~~~~l 484 (497)
+.++... ....+...+..+++++ ++.+ +++|+ ++. ++| ..++.... ...+...|.+++|+ ...++
T Consensus 379 ~~~~~~~--~~~~~~~~~~~~~~~~--~~~~-----l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~ 447 (464)
T 3v7d_B 379 ANDYSRK--FSYHHTNLSAITTFYV--SDNI-----LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLV 447 (464)
T ss_dssp TTTCCEE--EEEECTTCCCEEEEEE--CSSE-----EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEE
T ss_pred CCCCcee--eeecCCCCccEEEEEe--CCCE-----EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEE
Confidence 9987443 2224666777888888 5555 78877 777 999 44444443 56788999999997 33444
Q ss_pred EEEeCCceEEE
Q 010933 485 ACANGNSLFFH 495 (497)
Q Consensus 485 a~~~~~~~~i~ 495 (497)
+++++++..+|
T Consensus 448 ~~~~~~g~~~i 458 (464)
T 3v7d_B 448 AAVEKDGQSFL 458 (464)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEeCCeEEE
Confidence 45555654433
No 56
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.3e-36 Score=285.28 Aligned_cols=257 Identities=16% Similarity=0.266 Sum_probs=202.6
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
..|++++|+|+|++||+|+.|+.|+|||+.+++ .+..+.+|. ..|
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v 168 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----------------------IVMILQGHE------------QDI 168 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------SCE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----------------------EEEEEccCC------------CCE
Confidence 459999999999999999999999999998764 366788999 889
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
.+++| +|++.+|++++.|++|++||+.+++...
T Consensus 169 ~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~--------------------------------------------- 201 (393)
T 1erj_A 169 YSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSL--------------------------------------------- 201 (393)
T ss_dssp EEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEE---------------------------------------------
T ss_pred EEEEE--cCCCCEEEEecCCCcEEEEECCCCeeEE---------------------------------------------
Confidence 99999 6899999999999999999998766322
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
. ..+...+.+++|+| ++++|++| .|+.|++||++ .+.....+........+|...|.+++
T Consensus 202 ---------------~--~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 202 ---------------T--LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp ---------------E--EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC------CCCSSCEEEEE
T ss_pred ---------------E--EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEeecccccCCCCCCCCEEEEE
Confidence 1 13456789999999 89999999 99999999998 45454443222223467999999999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw 349 (497)
|+|++ .+|++++.|+.|++||+++...... ... .........+.+|...|.+++|+|++++|++|+ |+.|++|
T Consensus 264 ~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~----~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iw 337 (393)
T 1erj_A 264 FTRDG-QSVVSGSLDRSVKLWNLQNANNKSD----SKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337 (393)
T ss_dssp ECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred ECCCC-CEEEEEeCCCEEEEEECCCCCCccc----ccC-CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99999 9999999999999999987543210 000 000111223567888999999999999999986 5999999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC------CCCEEEEEeCCCcEEEEEcCC
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~s~~~dg~i~vw~~~~ 411 (497)
|+.+ ++++..+.+|...+ .+++|++ ++++|++|+.||.|+||++..
T Consensus 338 d~~~-~~~~~~l~~h~~~v---------------~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 338 DKKS-GNPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTT-CCEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ECCC-CeEEEEECCCCCCE---------------EEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9987 88899999998865 6888876 688999999999999999864
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-36 Score=288.83 Aligned_cols=318 Identities=14% Similarity=0.179 Sum_probs=242.5
Q ss_pred cchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc
Q 010933 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE 92 (497)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (497)
.|++...-. ......+.|...|++++|+|+|++||+|+.||.|++||+.+... ..+.+..
T Consensus 49 iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------------------~~~~~~~ 108 (416)
T 2pm9_A 49 LWSLLAADS-EKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------------------AINSMAR 108 (416)
T ss_dssp EEESSSGGG-CSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------CCCEEEE
T ss_pred EEEccCCCC-CcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------cccchhh
Confidence 566543211 12334456899999999999999999999999999999987321 1134667
Q ss_pred ccccCcccccccccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccc
Q 010933 93 FQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 171 (497)
Q Consensus 93 ~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (497)
+.+|. ..|.+++| +|+ +.+|++++.|+.|++||+.+++........
T Consensus 109 ~~~h~------------~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------------------- 155 (416)
T 2pm9_A 109 FSNHS------------SSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP------------------- 155 (416)
T ss_dssp CCCSS------------SCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC-------------------
T ss_pred ccCCc------------cceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCccccccccc-------------------
Confidence 78898 88999999 566 789999999999999999876521100000
Q ss_pred cCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceee
Q 010933 172 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCF 249 (497)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~ 249 (497)
..... ...|...|.+++|+|+ +..|+++ .|+.|++||++ .++..
T Consensus 156 --------------------------------~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~ 201 (416)
T 2pm9_A 156 --------------------------------LTPGQ-SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK-AKKEV 201 (416)
T ss_dssp --------------------------------BCCCC-SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT-TTEEE
T ss_pred --------------------------------ccccc-ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC-CCCcc
Confidence 00000 1578899999999998 7889998 99999999999 45555
Q ss_pred EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933 250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 326 (497)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 326 (497)
..+... ....+|...|.+++|+|++..+|++++.|+ .|++||++++.... ..+. .+|...+
T Consensus 202 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~---~~~~------------~~~~~~v 265 (416)
T 2pm9_A 202 IHLSYT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL---QTLN------------QGHQKGI 265 (416)
T ss_dssp EEECCC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS---BCCC------------SCCSSCE
T ss_pred eEEecc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc---EEee------------cCccCce
Confidence 442111 111234789999999999757999999998 99999999863221 2222 0456789
Q ss_pred cEEEEee-CCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCc
Q 010933 327 SDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNL 403 (497)
Q Consensus 327 ~~~~~s~-~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~ 403 (497)
.+++|+| ++++|++++ |+.|++||+++ ++++..+..|...+ ++++|+|++ ++|++++.||.
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCEEECTTCTTEEEECCSSSE
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEEEECCCCCCEEEEEecCCc
Confidence 9999999 899999986 59999999987 88899999888764 689999999 89999999999
Q ss_pred EEEEEcCCCCcceEE----------------------------------EeccCcceeeeEeecCCCcccccccceeEee
Q 010933 404 LRIFSHGVGSAGGIT----------------------------------VEAGKNENRKPILQAAPRARRSSLSNLTRGL 449 (497)
Q Consensus 404 i~vw~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 449 (497)
|++|++.+....... ...|..++..++|++ ++++ +++|+
T Consensus 330 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~-----la~~~ 402 (416)
T 2pm9_A 330 IEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF--GGKL-----VQITP 402 (416)
T ss_dssp EEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET--TTEE-----ECBCT
T ss_pred EEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee--CCeE-----EEEeC
Confidence 999999886533111 011677888999999 7777 99999
Q ss_pred ccCc-eec
Q 010933 450 YRQA-HEN 456 (497)
Q Consensus 450 ~d~~-~iw 456 (497)
.|+. ++|
T Consensus 403 ~d~~v~~w 410 (416)
T 2pm9_A 403 DGKGVSIT 410 (416)
T ss_dssp TSSCBCCB
T ss_pred CCCeEEEE
Confidence 9999 999
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.2e-35 Score=283.16 Aligned_cols=300 Identities=10% Similarity=0.081 Sum_probs=232.1
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+| ++||+|+.||.|+|||+.+++. ...+.....+.+|.
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~-----------------~~~~~~~~~~~~h~------------ 62 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDN-----------------ENPKDKSYSHFVHK------------ 62 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTT-----------------CCGGGGEEEEECCT------------
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccc-----------------ccCCCcceEEecCC------------
Confidence 5999999999999 7999999999999999988642 11234567778898
Q ss_pred cceeEEEEEecCC----C---CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 110 EKINRVRWCAAPN----G---SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 110 ~~i~~l~~~~s~~----~---~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
..|.+++|+ ++ + .+|++++.|+.|++|++.+++....
T Consensus 63 ~~v~~~~~~--~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~---------------------------------- 106 (397)
T 1sq9_A 63 SGLHHVDVL--QAIERDAFELCLVATTSFSGDLLFYRITREDETKK---------------------------------- 106 (397)
T ss_dssp TCEEEEEEE--EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC----------------------------------
T ss_pred CcEEEEEEe--cccccCCccccEEEEEcCCCCEEEEEccCCccccc----------------------------------
Confidence 889999995 55 7 8999999999999999987663100
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCC-----CCCeeEEEeC----CCCCE-EEEE-cCCeEEEEeCccC-----c
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAH-----DFNINSISNN----SDCET-FVSA-DDLRINLWNLEIS-----D 246 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~-l~~~-~d~~i~iwd~~~~-----~ 246 (497)
.....+ ..| ...|.+++|+ |+++. |+++ .|+.|++||++.. .
T Consensus 107 ---------------------~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 107 ---------------------VIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp ---------------------EEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred ---------------------ccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 001122 556 5899999999 99999 9998 9999999999840 2
Q ss_pred eeeE-----EeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933 247 QCFN-----IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 321 (497)
Q Consensus 247 ~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (497)
.... .+.........|...|.+++|+|++ +|++++.|+.|++||+++++.. ..+.. ..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~----~~~~~----------~~~ 228 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES----------QHS 228 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC----------CC-
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCcee----EEEec----------ccc
Confidence 2222 1100000014588999999999997 8999999999999999987543 33322 011
Q ss_pred c---cccccEEEEeeCCCEEEEE-ec---CeEEEEecCCCCceeeeeee-------------cccccccccccCCCCCcc
Q 010933 322 I---IASISDIKFANDGQHLLSR-DY---MNLKLWDIRMDSTPVATFKI-------------HEHLRPKLCDLYNNDSIF 381 (497)
Q Consensus 322 ~---~~~i~~~~~s~~g~~l~~~-~~---~~i~lwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 381 (497)
| ...+.+++|+|++++|+++ .+ +.|++||+++ ++.+..+.. |...+
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v------------- 294 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWV------------- 294 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCE-------------
T ss_pred ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcE-------------
Confidence 4 5789999999999999987 56 8999999986 788888887 66643
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe------cc---------------CcceeeeEeecCC-----
Q 010933 382 DKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE------AG---------------KNENRKPILQAAP----- 435 (497)
Q Consensus 382 ~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----- 435 (497)
.+++|+|++++|++++.||.|++||+.+++. ...+. +| ..+|+.++|++..
T Consensus 295 --~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~ 371 (397)
T 1sq9_A 295 --MSLSFNDSGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 371 (397)
T ss_dssp --EEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred --EEEEECCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence 6999999999999999999999999998854 47788 77 9999999999942
Q ss_pred ---CcccccccceeEeeccCc-eec
Q 010933 436 ---RARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 436 ---~~~~~~~~~l~~~~~d~~-~iw 456 (497)
++.. |++++.|+. ++|
T Consensus 372 ~~~~~~~-----l~s~~~dg~i~iw 391 (397)
T 1sq9_A 372 GADLNES-----LCCVCLDRSIRWF 391 (397)
T ss_dssp TCTTSCE-----EEEEETTTEEEEE
T ss_pred cccccce-----EEEecCCCcEEEE
Confidence 0145 899999999 999
No 59
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=268.25 Aligned_cols=273 Identities=14% Similarity=0.107 Sum_probs=217.5
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++| |++++||+|+.||.|++||+.+++ ....+..|.
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~------------ 59 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----------------------LGTVVYTGQ------------ 59 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----------------------EEEEEEECS------------
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----------------------EEEEeecCC------------
Confidence 59999999999 999999999999999999997763 356677887
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| +|++.+|++++.|+.|++|++......
T Consensus 60 ~~v~~~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~------------------------------------------- 94 (313)
T 3odt_A 60 GFLNSVCY--DSEKELLLFGGKDTMINGVPLFATSGE------------------------------------------- 94 (313)
T ss_dssp SCEEEEEE--ETTTTEEEEEETTSCEEEEETTCCTTS-------------------------------------------
T ss_pred ccEEEEEE--CCCCCEEEEecCCCeEEEEEeeecCCC-------------------------------------------
Confidence 88999999 578999999999999999998764311
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+++..+ .+|...|.+++| +++.++++ .|+.|++||. +..... +..|...+.+
T Consensus 95 --------------~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~~-------~~~~~~~v~~ 147 (313)
T 3odt_A 95 --------------DPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVYN-------LQAHNASVWD 147 (313)
T ss_dssp --------------CC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEEE-------EECCSSCEEE
T ss_pred --------------Ccccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEEe-------cccCCCceeE
Confidence 122222 689999999999 57789998 9999999992 333333 5679999999
Q ss_pred EEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeE
Q 010933 269 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL 346 (497)
Q Consensus 269 ~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i 346 (497)
++|.| ++ .++++++.||.|++||.... . ..+.. .|...+.+++|+|++. ++++ .++.|
T Consensus 148 ~~~~~~~~-~~l~~~~~d~~i~i~d~~~~--~----~~~~~------------~~~~~i~~~~~~~~~~-~~~~~~dg~i 207 (313)
T 3odt_A 148 AKVVSFSE-NKFLTASADKTIKLWQNDKV--I----KTFSG------------IHNDVVRHLAVVDDGH-FISCSNDGLI 207 (313)
T ss_dssp EEEEETTT-TEEEEEETTSCEEEEETTEE--E----EEECS------------SCSSCEEEEEEEETTE-EEEEETTSEE
T ss_pred EEEccCCC-CEEEEEECCCCEEEEecCce--E----EEEec------------cCcccEEEEEEcCCCe-EEEccCCCeE
Confidence 99998 66 99999999999999994432 1 22222 1457899999999998 5555 56999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcce
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 426 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 426 (497)
++||+++ ++++..+..|...+ ++++|+|++ .|++++.||.|++||+.+++.. ..+..|..++
T Consensus 208 ~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~i 269 (313)
T 3odt_A 208 KLVDMHT-GDVLRTYEGHESFV---------------YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLK-QVITLPAISI 269 (313)
T ss_dssp EEEETTT-CCEEEEEECCSSCE---------------EEEEECTTS-CEEEEETTSEEEEECTTTCCEE-EEEECSSSCE
T ss_pred EEEECCc-hhhhhhhhcCCceE---------------EEEEEecCC-CEEEEecCCEEEEEECCCCcee-EEEeccCceE
Confidence 9999987 88899998888764 799999999 6899999999999999988543 6677777777
Q ss_pred eeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 427 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
..+++++ +++ +++++.|+. ++|
T Consensus 270 ~~~~~~~--~~~------~~~~~~dg~i~iw 292 (313)
T 3odt_A 270 WSVDCMS--NGD------IIVGSSDNLVRIF 292 (313)
T ss_dssp EEEEECT--TSC------EEEEETTSCEEEE
T ss_pred EEEEEcc--CCC------EEEEeCCCcEEEE
Confidence 7777766 222 345666666 666
No 60
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-34 Score=270.69 Aligned_cols=288 Identities=15% Similarity=0.174 Sum_probs=226.6
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 166 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
....+|+||. +.|++|+| +|+ +++|++||.|++|++||+...+...
T Consensus 29 ~l~~tL~GH~------------~~V~~v~~--sp~~~~~l~S~s~D~~i~vWd~~~~~~~~------------------- 75 (340)
T 4aow_A 29 TLRGTLKGHN------------GWVTQIAT--TPQFPDMILSASRDKTIIMWKLTRDETNY------------------- 75 (340)
T ss_dssp EEEEEECCCS------------SCEEEEEE--CTTCTTEEEEEETTSCEEEEEECCSSSCS-------------------
T ss_pred EEEEEECCcc------------CCEEEEEE--eCCCCCEEEEEcCCCeEEEEECCCCCccc-------------------
Confidence 5567899999 99999999 565 6799999999999999998654211
Q ss_pred cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC
Q 010933 167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 245 (497)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~ 245 (497)
..+.+.+ .+|...|.+++|+|++++|++| .|+.|++|+.. .
T Consensus 76 ------------------------------------~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~-~ 117 (340)
T 4aow_A 76 ------------------------------------GIPQRAL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-T 117 (340)
T ss_dssp ------------------------------------EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-T
T ss_pred ------------------------------------ceeeEEE-eCCCCCEEEEEECCCCCEEEEEcccccceEEeec-c
Confidence 1233444 7999999999999999999999 99999999998 4
Q ss_pred ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933 246 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 325 (497)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (497)
...... ...+...+..+.+++++ .+|++++.|+.+++||+...... ... ..+|...
T Consensus 118 ~~~~~~-------~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~-----~~~-----------~~~~~~~ 173 (340)
T 4aow_A 118 GTTTRR-------FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKY-----TVQ-----------DESHSEW 173 (340)
T ss_dssp TEEEEE-------EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE-----EEC-----------SSSCSSC
T ss_pred cceeee-------ecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceE-----EEE-----------eccccCc
Confidence 444333 45677888999999999 99999999999999998765322 111 2345678
Q ss_pred ccEEEEeeCC--CEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 326 ISDIKFANDG--QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 326 i~~~~~s~~g--~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
+..++|++++ .++++++ |+.|++||++. ++.+..+.+|...+ ++++|+|++++|++|+.||
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v---------------~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGYL---------------NTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTC
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCcE---------------EEEEECCCCCEEEEEeCCC
Confidence 9999998865 4666664 59999999986 88888999888764 7899999999999999999
Q ss_pred cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCC-----------cccccccCC
Q 010933 403 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----------HELSYNLSS 470 (497)
Q Consensus 403 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~-----------~~~~~~~~~ 470 (497)
.|++||+.+.+.+ ..+. +...+..++++| ++. +++++.|+. ++|..... ......|..
T Consensus 238 ~i~iwd~~~~~~~-~~~~-~~~~v~~~~~~~--~~~------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~ 307 (340)
T 4aow_A 238 QAMLWDLNEGKHL-YTLD-GGDIINALCFSP--NRY------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 307 (340)
T ss_dssp EEEEEETTTTEEE-EEEE-CSSCEEEEEECS--SSS------EEEEEETTEEEEEETTTTEEEEEECCC-------CCCC
T ss_pred eEEEEEeccCcee-eeec-CCceEEeeecCC--CCc------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC
Confidence 9999999987443 4554 446889999988 333 567777888 99933211 112346888
Q ss_pred CeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 471 KLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 471 ~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
.|++++|+|++++||+|+.| .++||+
T Consensus 308 ~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 308 QCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 99999999999999999955 599997
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-34 Score=271.97 Aligned_cols=293 Identities=14% Similarity=0.158 Sum_probs=235.8
Q ss_pred ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933 89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 168 (497)
Q Consensus 89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
....+.+|. +.|++++| +|++++|++++.|+.|++||+.+++..
T Consensus 24 ~~~~l~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~---------------------- 67 (369)
T 3zwl_B 24 KAIKLTGHE------------RPLTQVKY--NKEGDLLFSCSKDSSASVWYSLNGERL---------------------- 67 (369)
T ss_dssp EEEEEECCS------------SCEEEEEE--CTTSCEEEEEESSSCEEEEETTTCCEE----------------------
T ss_pred ccEEEEEee------------ceEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCchhh----------------------
Confidence 345578888 99999999 689999999999999999999876532
Q ss_pred ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce
Q 010933 169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 247 (497)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 247 (497)
..+ .+|...|.+++|+|+++.|+++ .|+.|++||+. .++
T Consensus 68 --------------------------------------~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~ 107 (369)
T 3zwl_B 68 --------------------------------------GTL-DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQ 107 (369)
T ss_dssp --------------------------------------EEE-CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TCC
T ss_pred --------------------------------------hhh-hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCc
Confidence 222 6899999999999999999999 99999999999 455
Q ss_pred eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-----CeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933 248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 322 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (497)
.... +. +...+.+++|+|++ .+|++++.+ +.|++||++.+.... .+.. ........+..|
T Consensus 108 ~~~~-------~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~----~~~~--~~~~~~~~~~~~ 172 (369)
T 3zwl_B 108 CVAT-------WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATH----ELTK--VSEEPIHKIITH 172 (369)
T ss_dssp EEEE-------EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTC----CEEE--ECSSCSEEEECC
T ss_pred EEEE-------ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccce----eecc--cccceeeeccCC
Confidence 5544 22 77899999999999 999999998 999999998875432 1111 011112223344
Q ss_pred cc--cccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933 323 IA--SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 399 (497)
Q Consensus 323 ~~--~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 399 (497)
.. .+.+++|+|++++|++++. +.|++||++...+.+..+..|...+ .+++|+|++++|++++
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI---------------SDMQFSPDLTYFITSS 237 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE---------------EEEEECTTSSEEEEEE
T ss_pred cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce---------------eEEEECCCCCEEEEec
Confidence 44 8999999999999999864 9999999986567888888887754 6899999999999999
Q ss_pred CCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccC--------------c-eec--CCCCCc
Q 010933 400 YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ--------------A-HEN--SSSGHH 462 (497)
Q Consensus 400 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~--------------~-~iw--~~~~~~ 462 (497)
.||.|++||+.+++.. ..+. +..++..++++| ++.. +++++.++ . .+| ..++..
T Consensus 238 ~d~~i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~--~~~~-----l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVL-KKYE-TDCPLNTAVITP--LKEF-----IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp TTSEEEEEETTTCCEE-EEEE-CSSCEEEEEECS--SSSE-----EEEEECCC-------------CEEEEEETTTCCEE
T ss_pred CCceEEEEECCCCcee-eeec-CCCCceeEEecC--CCce-----EEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 9999999999987544 4454 788999999998 5666 88888777 4 666 344445
Q ss_pred ccccccCCCeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 463 ELSYNLSSKLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 463 ~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
....+|...|++++|+|++++||+++.| .+++|.
T Consensus 309 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 309 GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred hheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 5667899999999999999999999954 599996
No 62
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=280.22 Aligned_cols=257 Identities=15% Similarity=0.217 Sum_probs=204.3
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+|+|++||+|+.||.|+|||+.... .+....+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------------~~~~~~~~~h~------------ 55 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE------------ 55 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCS------------
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------------ceeeeEecCCC------------
Confidence 599999999999999999999999999999997542 24567788998
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|++++|++..++.+|++++.|+.|++||+.+++..
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~------------------------------------------- 92 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS------------------------------------------- 92 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE-------------------------------------------
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee-------------------------------------------
Confidence 8999999954334899999999999999999876522
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
.+..+ ..|...|.+++|+|+ ++.|+++ .|+.|++||++........ .+..|...|
T Consensus 93 ---------------~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~~v 150 (379)
T 3jrp_A 93 ---------------QIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGV 150 (379)
T ss_dssp ---------------EEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEECCTTCE
T ss_pred ---------------Eeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------EecCCCCce
Confidence 11222 678999999999999 9999999 9999999999844322221 256799999
Q ss_pred EEEEEeC-------------CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee
Q 010933 267 TSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 333 (497)
Q Consensus 267 ~~~~~~~-------------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 333 (497)
.+++|+| ++ .+|++++.|+.|++||++++......... +.+|...|.+++|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRDVAWSP 216 (379)
T ss_dssp EEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEEEEECC
T ss_pred EEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEE-------------EecccCcEeEEEECC
Confidence 9999999 57 89999999999999999876533211122 344678899999999
Q ss_pred C---CCEEEEEe-cCeEEEEecCCCCce--eeee--eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933 334 D---GQHLLSRD-YMNLKLWDIRMDSTP--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 405 (497)
Q Consensus 334 ~---g~~l~~~~-~~~i~lwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 405 (497)
+ +++|++++ |+.|++||++..... ...+ ..|... +++++|+|++++|++++.||.|+
T Consensus 217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~dg~i~ 281 (379)
T 3jrp_A 217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSGGDNKVT 281 (379)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEESSSSEE
T ss_pred CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc---------------EEEEEEcCCCCEEEEecCCCcEE
Confidence 9 89999986 599999999863211 1111 223332 26899999999999999999999
Q ss_pred EEEcCCCC
Q 010933 406 IFSHGVGS 413 (497)
Q Consensus 406 vw~~~~~~ 413 (497)
+|++....
T Consensus 282 iw~~~~~~ 289 (379)
T 3jrp_A 282 LWKENLEG 289 (379)
T ss_dssp EEEEEETT
T ss_pred EEeCCCCC
Confidence 99998653
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=277.46 Aligned_cols=348 Identities=16% Similarity=0.204 Sum_probs=227.8
Q ss_pred cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.|.+.|++++|+| +|++||+|+.||.|++||+.+++......... ..........+|.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~----------- 99 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA----------VCSIGRDHPDVHR----------- 99 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE----------EEEECTTCTTCCS-----------
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc----------cccccccccccCC-----------
Confidence 4999999999999 99999999999999999998865310000000 0000011123576
Q ss_pred ccceeEEEEEecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 109 EEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 109 ~~~i~~l~~~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..|.+++| +| ++.+|++++.|+.|++||+.+++....
T Consensus 100 -~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------------------------------------- 137 (408)
T 4a11_B 100 -YSVETVQW--YPHDTGMFTSSSFDKTLKVWDTNTLQTADV--------------------------------------- 137 (408)
T ss_dssp -SCEEEEEE--CTTCTTCEEEEETTSEEEEEETTTTEEEEE---------------------------------------
T ss_pred -CcEEEEEE--ccCCCcEEEEEeCCCeEEEeeCCCCcccee---------------------------------------
Confidence 88999999 46 677999999999999999987663321
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
..+...+.++.+++ ++..++++ .|+.|++||++ .+..... +..|.
T Consensus 138 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~-------~~~~~ 186 (408)
T 4a11_B 138 -----------------------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-SGSCSHI-------LQGHR 186 (408)
T ss_dssp -----------------------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-SSCCCEE-------ECCCC
T ss_pred -----------------------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-Ccceeee-------ecCCC
Confidence 13566788899987 44589998 99999999998 4444443 67899
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccc--cccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA--ESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
..|.+++|+|++..+|++++.||.|++||++++.... ..+..+. ........+.+|...|.+++|+|++++|+++
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL---ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS---EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc---ccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 9999999999993479999999999999998875332 2222111 1111223346788999999999999999998
Q ss_pred e-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933 342 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 342 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 420 (497)
+ ++.|++||+.+ ++....+..+...... ... ........+..+++++.|+.|++||+.+++.+ ..+.
T Consensus 264 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~ 331 (408)
T 4a11_B 264 GTDNRMRLWNSSN-GENTLVNYGKVCNNSK-------KGL---KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI-TMLK 331 (408)
T ss_dssp ETTSCEEEEETTT-CCBCCCCCCCCCCCCS-------SCC---CCEECCSSSSCEEEEEETTEEEEEETTTCCEE-EEEC
T ss_pred cCCCeEEEEECCC-Cccceecccccccccc-------ccc---eeEEecCCCceEEEEecCCEEEEEECcCCcce-eeec
Confidence 5 59999999986 5554444333221100 000 11222334566777888999999999988554 8899
Q ss_pred ccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC--CCCcccccccCCCeEEEEEecCCC--EEEEEeCCceEEE
Q 010933 421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTN--LIACANGNSLFFH 495 (497)
Q Consensus 421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~~~~~~~~~~~~i~~l~~~p~~~--~la~~~~~~~~i~ 495 (497)
+|..+|.+++|+| ++.. |++|+.||. ++|.. .+......... ....+.|... +...+.++.+.+|
T Consensus 332 ~~~~~v~~~~~s~--~~~~-----l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W 401 (408)
T 4a11_B 332 GHYKTVDCCVFQS--NFQE-----LYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAW 401 (408)
T ss_dssp CCSSCEEEEEEET--TTTE-----EEEEETTSCEEEEEECC---------------------------------------
T ss_pred cCCCeEEEEEEcC--CCCE-----EEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceeec
Confidence 9999999999999 6666 999999999 99933 22222111111 1223444322 2233346778888
Q ss_pred e
Q 010933 496 Y 496 (497)
Q Consensus 496 ~ 496 (497)
+
T Consensus 402 ~ 402 (408)
T 4a11_B 402 S 402 (408)
T ss_dssp -
T ss_pred C
Confidence 6
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-34 Score=274.23 Aligned_cols=306 Identities=14% Similarity=0.152 Sum_probs=229.5
Q ss_pred cCCcceEEEEEcCC----CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 30 ~h~~~I~~i~~sp~----g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
+|.++|++++|+|+ ...+++++.++.|++||+.+++. +..+..|..
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----------------------~~~~~~~~~------- 65 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----------------------IRLLQSYVD------- 65 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----------------------EEEEEEEEC-------
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----------------------EEeeeeccc-------
Confidence 59999999999984 45666677778999999986542 233332220
Q ss_pred cccccceeEEEEEecCC--CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 106 LEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~--~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
..+...|++++|+|..+ +.+|++++.|+.|++||+.+++..
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~------------------------------------- 108 (366)
T 3k26_A 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI------------------------------------- 108 (366)
T ss_dssp SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE-------------------------------------
T ss_pred cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe-------------------------------------
Confidence 00127899999975322 679999999999999999876532
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (497)
..+ .+|...|.+++|+| +++.|++| .|+.|++||++ .++....+ ..+.+
T Consensus 109 -----------------------~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~----~~~~~ 159 (366)
T 3k26_A 109 -----------------------KHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-TDTLVAIF----GGVEG 159 (366)
T ss_dssp -----------------------EEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT-TTEEEEEE----CSTTS
T ss_pred -----------------------eee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee-cCeEEEEe----ccccc
Confidence 222 68999999999999 99999999 99999999998 45555442 12368
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecc-----------cccccCCccccccccccccEEE
Q 010933 262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD-----------AAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
|...|.+++|+|++ .+|++++.||.|++||+++++........... .............|...|.+++
T Consensus 160 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 160 HRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred ccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 99999999999999 99999999999999999987543111000000 0000011122334788999999
Q ss_pred EeeCCCEEEEEe-cCeEEEEecCCCCc-------------eeeeeeecccccccccccCCCCCccceeEEEEcCC--CCE
Q 010933 331 FANDGQHLLSRD-YMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLH 394 (497)
Q Consensus 331 ~s~~g~~l~~~~-~~~i~lwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~ 394 (497)
|+ +++|++++ ++.|++||+..... .+..+..|...+ ++++|+|+ +++
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~~~ 301 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI---------------WYMRFSMDFWQKM 301 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS---------------SCCCCEECTTSSE
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE---------------EEEEEcCCCCCcE
Confidence 99 77888885 59999999986322 255556665543 58999999 999
Q ss_pred EEEEeCCCcEEEEEcCCCCcc---eEEEecc--CcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 395 FATGSYSNLLRIFSHGVGSAG---GITVEAG--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 395 l~s~~~dg~i~vw~~~~~~~~---~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
|++|+.||.|++||+.+++.. ...+.+| ..+|.+++|++ ++.+ |++++.|+. ++|
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~-----l~s~~~dg~i~iw 362 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR--DSSI-----LIAVCDDASIWRW 362 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT--TSSE-----EEEEETTSEEEEE
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC--CCCe-----EEEEeCCCEEEEE
Confidence 999999999999999987543 3477777 79999999999 6666 999999999 999
No 65
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=276.32 Aligned_cols=286 Identities=13% Similarity=0.154 Sum_probs=221.2
Q ss_pred cCCcceEEEEEcCCCCEE-EEeec---CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYL-AVGDR---GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~l-asg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
+|.+.|++++|+|+++.+ ++|+. ||.|+|||+.+++. .. ....+|.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~---------------------~~-~~~~~~~-------- 65 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL---------------------KL-LREIEKA-------- 65 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE---------------------EE-EEEEEES--------
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc---------------------cc-eeeeccc--------
Confidence 489999999999999654 56665 89999999987643 11 1122576
Q ss_pred cccccceeEEEEEecCC---CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 106 LEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~---~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
..|.+++| +|+ +.+|++++.|+.|++||+.+++.
T Consensus 66 ----~~v~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------------------------- 102 (357)
T 3i2n_A 66 ----KPIKCGTF--GATSLQQRYLATGDFGGNLHIWNLEAPEM------------------------------------- 102 (357)
T ss_dssp ----SCEEEEEC--TTCCTTTCCEEEEETTSCEEEECTTSCSS-------------------------------------
T ss_pred ----CcEEEEEE--cCCCCCCceEEEecCCCeEEEEeCCCCCc-------------------------------------
Confidence 88999999 566 69999999999999999987551
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEE------eCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecC
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSIS------NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 255 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 255 (497)
++..+ .+|...|.++. |+|+++.|+++ .|+.|++||++........+...
T Consensus 103 ----------------------~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 103 ----------------------PVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp ----------------------CSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred ----------------------cEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence 11222 68899999994 57899999999 99999999999544344442110
Q ss_pred CCccCCCCCCeEEEE----EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEE
Q 010933 256 PSNMDDLTEVITSAE----FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 331 (497)
Q Consensus 256 ~~~~~~~~~~i~~~~----~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 331 (497)
...+...+.+++ |+|++ .+|++++.||.|++||+++++.. .. ..|...+.+++|
T Consensus 160 ---~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~--------------~~~~~~v~~~~~ 217 (357)
T 3i2n_A 160 ---QGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----WE--------------TNIKNGVCSLEF 217 (357)
T ss_dssp ---TTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----EE--------------EECSSCEEEEEE
T ss_pred ---CCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----ee--------------cCCCCceEEEEc
Confidence 111234888888 67888 99999999999999999987542 11 224578999999
Q ss_pred ee---CCCEEEEEe-cCeEEEEecCCCCceeeeee-----ecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCC
Q 010933 332 AN---DGQHLLSRD-YMNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYS 401 (497)
Q Consensus 332 s~---~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~d 401 (497)
+| ++.+|++++ ++.|++||++. ++.+..+. +|...+ ++++|+|+++ +|++++.|
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~~~~d 281 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTV---------------WQVRHLPQNRELFLTAGGA 281 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCE---------------EEEEEETTEEEEEEEEETT
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCE---------------EEEEECCCCCcEEEEEeCC
Confidence 99 899999986 59999999986 55555444 666543 7999999998 89999999
Q ss_pred CcEEEEEcCCCCc------------------ceEEEeccCcceeeeEeecCCCccccccccee-EeeccCc-eec
Q 010933 402 NLLRIFSHGVGSA------------------GGITVEAGKNENRKPILQAAPRARRSSLSNLT-RGLYRQA-HEN 456 (497)
Q Consensus 402 g~i~vw~~~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~~~~d~~-~iw 456 (497)
|.|++||+.++.. ....+.+|..+|.+++|+| ++.. ++ +++.|+. ++|
T Consensus 282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~-----l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP--DKRG-----LCVCSSFDQTVRVL 349 (357)
T ss_dssp SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS--SSTT-----EEEEEETTSEEEEE
T ss_pred CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC--CCCe-----EEEEecCCCcEEEE
Confidence 9999999986532 3567889999999999999 6666 77 7999999 999
No 66
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.1e-35 Score=277.12 Aligned_cols=295 Identities=9% Similarity=0.040 Sum_probs=208.0
Q ss_pred cceEEEEEcCCCCEEEEeecC-------CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 33 DIVSAIEFDKTGDYLAVGDRG-------GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
-||+|++|+|||++||+|+.+ +.|++|++..+...... .+ .......+.+|+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-~~------------~~~~~~~l~~~~-------- 73 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-QF------------HILSEFALEDND-------- 73 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-HE------------EEEEEEECCTTS--------
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-ee------------eeeeEEEccCCC--------
Confidence 489999999999999999753 36999999875431000 00 001112456677
Q ss_pred cccccceeEEEEEecCCCCEEEEEeC-----------CccEEEeecCchheeccccCCCCCccccccccccccCccccCC
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTN-----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 174 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (497)
..|.++++ ++..++++.. |+.+++|++.......
T Consensus 74 ----~~v~s~~~----~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~--------------------------- 118 (365)
T 4h5i_A 74 ----DSPTAIDA----SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQL--------------------------- 118 (365)
T ss_dssp ----CCCCEEEE----ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEE---------------------------
T ss_pred ----CceEEEEe----CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceE---------------------------
Confidence 77888887 2446776654 4555555554322100
Q ss_pred CCCcccccccccccCcceEEEeecCCccceeeee-eccCCCCCeeEEEeCCCCCEEEE--E-cCCeEEEEeCccCceeeE
Q 010933 175 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFN 250 (497)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~ 250 (497)
+... .... ....+...+.+++|+|||+++++ + .|++|++||++ ..+...
T Consensus 119 ------------------~~~~--------~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~-~~~~~~ 171 (365)
T 4h5i_A 119 ------------------EFLT--------SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS-DLTEKF 171 (365)
T ss_dssp ------------------EEEE--------EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT-TTEEEE
T ss_pred ------------------EEee--------eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC-CCcEEE
Confidence 0000 0000 01345667899999999999864 4 68999999999 454444
Q ss_pred EeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933 251 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
. + .|...|.+++|+|+| ++|++++.+ .+++|+..+++.... .. ...|...+.+++
T Consensus 172 ~-------~-~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~--~~-------------~~~~~~~v~~v~ 226 (365)
T 4h5i_A 172 E-------I-ETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIAR--KT-------------DFDKNWSLSKIN 226 (365)
T ss_dssp E-------E-ECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEE--EC-------------CCCTTEEEEEEE
T ss_pred E-------e-CCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceee--ee-------------cCCCCCCEEEEE
Confidence 3 2 377789999999999 999998855 466777666543211 11 123557899999
Q ss_pred EeeCCCEEEEEe-cC----eEEEEecCCCCce----eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933 331 FANDGQHLLSRD-YM----NLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 401 (497)
Q Consensus 331 ~s~~g~~l~~~~-~~----~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 401 (497)
|+|+++++++++ ++ .+++|++.. ... ...+.+|...+ ++++|+|||++||+|+.|
T Consensus 227 fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~V---------------~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQVTNRFKGI---------------TSMDVDMKGELAVLASND 290 (365)
T ss_dssp EEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEEEESSCSCE---------------EEEEECTTSCEEEEEETT
T ss_pred EcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeeeecCCCCCe---------------EeEEECCCCCceEEEcCC
Confidence 999999999874 33 688899875 322 23455565543 799999999999999999
Q ss_pred CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC
Q 010933 402 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 458 (497)
Q Consensus 402 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~ 458 (497)
+.|+|||+++++.+...+++|..+|++++|+| ++++ |++|+.|+. +||..
T Consensus 291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp--dg~~-----laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISP--DSTY-----VASVSAANTIHIIKL 341 (365)
T ss_dssp SCEEEEETTTTEEEEEETTSSSSCEEEEEECT--TSCE-----EEEEETTSEEEEEEC
T ss_pred CEEEEEECCCCcEEEEecCcccCCEEEEEECC--CCCE-----EEEEeCCCeEEEEEc
Confidence 99999999998666455689999999999999 7777 999999999 99943
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=280.65 Aligned_cols=292 Identities=15% Similarity=0.177 Sum_probs=230.7
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
|.+.|++++|+|+|++||+|+.||.|++||. ++ ..+..+.+|. .
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~-----------------------~~~~~~~~~~------------~ 150 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TG-----------------------ALLNVLNFHR------------A 150 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TS-----------------------CEEEEECCCC------------S
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CC-----------------------CeeeeccCCC------------c
Confidence 6789999999999999999999999999993 33 3366778888 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.+++| +|++.+|++++.|+.|++||+.+++............
T Consensus 151 ~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------------------------- 194 (425)
T 1r5m_A 151 PIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG---------------------------------- 194 (425)
T ss_dssp CEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------------
T ss_pred cEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc----------------------------------
Confidence 8999999 6899999999999999999998876544321111000
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
..............+.+++|++++. ++++ .++.|++||++ .+..... +..|...|.++
T Consensus 195 ------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~-~~~~~~~-------~~~~~~~i~~~ 253 (425)
T 1r5m_A 195 ------------SSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQIT-EKTPTGK-------LIGHHGPISVL 253 (425)
T ss_dssp -----------------------CCCBSCCEEEETTE-EEEECGGGCEEEEETT-CSSCSEE-------ECCCSSCEEEE
T ss_pred ------------cceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcC-CCceeee-------eccCCCceEEE
Confidence 0000000023334488899998864 6666 99999999999 4444443 56799999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 348 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~l 348 (497)
+|+|++ .+|++++.|+.|++||+++++.. ..+. .|...+.+++|+|++ ++++++ ++.|++
T Consensus 254 ~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 254 EFNDTN-KLLLSASDDGTLRIWHGGNGNSQ----NCFY-------------GHSQSIVSASWVGDD-KVISCSMDGSVRL 314 (425)
T ss_dssp EEETTT-TEEEEEETTSCEEEECSSSBSCS----EEEC-------------CCSSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred EECCCC-CEEEEEcCCCEEEEEECCCCccc----eEec-------------CCCccEEEEEECCCC-EEEEEeCCCcEEE
Confidence 999999 89999999999999999987544 3333 345789999999999 777775 599999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC---------------
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS--------------- 413 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~--------------- 413 (497)
||+++ ++.+..+..|...+ .+++|+|++++|++++.||.|++||+.++.
T Consensus 315 ~d~~~-~~~~~~~~~~~~~i---------------~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 378 (425)
T 1r5m_A 315 WSLKQ-NTLLALSIVDGVPI---------------FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN 378 (425)
T ss_dssp EETTT-TEEEEEEECTTCCE---------------EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred EECCC-CcEeEecccCCccE---------------EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence 99986 88888888877654 689999999999999999999999998764
Q ss_pred ----cceEEEeccCc--ceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 414 ----AGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 414 ----~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
.....+..|.. ++.+++|++ ++.+ |++++.|+. ++|.
T Consensus 379 ~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~-----l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 379 PLPIPLYASYQSSQDNDYIFDLSWNC--AGNK-----ISVAYSLQEGSVVA 422 (425)
T ss_dssp CEECCEEEEECCTTCCCCEEEEEECT--TSSE-----EEEEESSSCCEEEE
T ss_pred cccchhhhhhcCcccCCceEEEEccC--CCce-----EEEEecCceEEEEe
Confidence 14578889977 999999998 6666 999999998 9993
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.6e-34 Score=290.02 Aligned_cols=343 Identities=15% Similarity=0.132 Sum_probs=263.2
Q ss_pred cCCcc-eEEEEEcC--CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 30 QDVDI-VSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 30 ~h~~~-I~~i~~sp--~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
+|.+. |++++|+| +|++||+|+.||.|+|||+.+++.. ..........+.+|.
T Consensus 61 ~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~---------------~~~~~~~~~~~~~~~--------- 116 (615)
T 1pgu_A 61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES---------------NSVEVNVKSEFQVLA--------- 116 (615)
T ss_dssp TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG---------------TEEEEEEEEEEECCS---------
T ss_pred cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccc---------------ccccccccchhhccc---------
Confidence 58899 99999999 9999999999999999999754100 000114456777888
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCC----ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcc-cc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HG 181 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 181 (497)
..|.+++| +|++++|++++.+ +.|.+||. ++...... .+.+.+....+.++.. .+
T Consensus 117 ---~~v~~~~~--s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l 176 (615)
T 1pgu_A 117 ---GPISDISW--DFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVS-------------GHSQRINACHLKQSRPMRS 176 (615)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTT--CCEEEECC-------------SCSSCEEEEEECSSSSCEE
T ss_pred ---ccEEEEEE--eCCCCEEEEeccCCCCccEEEEEEC--CCcceeee-------------cCCccEEEEEECCCCCcEE
Confidence 88999999 6899999999987 78999983 22222111 1223344455555655 45
Q ss_pred cccccccCcceEEEeecCCccceeeeeeccCCCC---CeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecCC
Q 010933 182 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKP 256 (497)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 256 (497)
+.++. ++.+++|+... .+++..+ .+|.. .|.+++|+|+ ++.|+++ .|+.|++||++ .++....
T Consensus 177 ~~~~~--d~~v~vwd~~~---~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~----- 244 (615)
T 1pgu_A 177 MTVGD--DGSVVFYQGPP---FKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-SGEFLKY----- 244 (615)
T ss_dssp EEEET--TTEEEEEETTT---BEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-TCCEEEE-----
T ss_pred EEEeC--CCcEEEEeCCC---cceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC-CCCEeEE-----
Confidence 55554 88999999774 4566665 78988 9999999999 9999999 99999999998 4555544
Q ss_pred Ccc-C---CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccc------------------------------
Q 010933 257 SNM-D---DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS------------------------------ 302 (497)
Q Consensus 257 ~~~-~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------------------------------ 302 (497)
+ . .|...|.+++|+ ++ .+|++++.|+.|++||+++++.....
T Consensus 245 --~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 320 (615)
T 1pgu_A 245 --IEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320 (615)
T ss_dssp --CCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred --ecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCC
Confidence 4 4 799999999999 88 99999999999999999865422100
Q ss_pred -----------cceeccccc------------------------------------------------------------
Q 010933 303 -----------ARILRDAAE------------------------------------------------------------ 311 (497)
Q Consensus 303 -----------~~~~~~~~~------------------------------------------------------------ 311 (497)
...+..|..
T Consensus 321 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~ 400 (615)
T 1pgu_A 321 LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI 400 (615)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEc
Confidence 000000000
Q ss_pred -----------------------------------c---------------------------c-CC-----------c-
Q 010933 312 -----------------------------------S---------------------------H-GS-----------K- 316 (497)
Q Consensus 312 -----------------------------------~---------------------------~-~~-----------~- 316 (497)
. . .. .
T Consensus 401 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~ 480 (615)
T 1pgu_A 401 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS 480 (615)
T ss_dssp EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred ccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccc
Confidence 0 0 00 0
Q ss_pred -cccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeee-cccccccccccCCCCCccceeEEEEcC---
Q 010933 317 -SFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSG--- 390 (497)
Q Consensus 317 -~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~--- 390 (497)
..+.+|...|.+++|+|++++|++++ |+.|++||+.+ ++.+..+.+ |...+ ++++|+|
T Consensus 481 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v---------------~~~~~sp~~~ 544 (615)
T 1pgu_A 481 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKI---------------NAISWKPAEK 544 (615)
T ss_dssp EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCE---------------EEEEECCCC-
T ss_pred ccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCce---------------eEEEEcCccc
Confidence 23456788899999999999999986 59999999986 888888877 77654 7999999
Q ss_pred -------CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 391 -------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 391 -------~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
++++|++++.||.|++||+.++......+.+|..+|.+++|++. .. |++++.|+. ++|
T Consensus 545 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~-------~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-------ST-LVSSGADACIKRW 610 (615)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET-------TE-EEEEETTSCEEEE
T ss_pred cccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCC-------CC-eEEecCCceEEEE
Confidence 99999999999999999999885666889999999999999995 23 799999998 999
No 69
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-34 Score=302.17 Aligned_cols=365 Identities=14% Similarity=0.139 Sum_probs=271.8
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|...|++++|+|+|++||+|+.||.|++||+.+++. +..+.+|.
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------------------~~~~~~~~------------ 97 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------------------VVDFEAHP------------ 97 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------------------EEEEECCS------------
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEecCC------------
Confidence 4889999999999999999999999999999988743 66778898
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCch-heeccccCCCCCccccccccccccCccccCCCC-Ccccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP-SFAHGYHLEWT 187 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 187 (497)
+.|.+++| +|++.+|++++.|+.|++|++.++ ....... .+.+.+....+.+ +...++.++.
T Consensus 98 ~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-------------~~~~~v~~~~~~p~~~~~l~~~~~- 161 (814)
T 3mkq_A 98 DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-------------GHEHFVMCVAFNPKDPSTFASGCL- 161 (814)
T ss_dssp SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-------------CCSSCEEEEEEETTEEEEEEEEET-
T ss_pred CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-------------CCCCcEEEEEEEcCCCCEEEEEeC-
Confidence 88999999 689999999999999999999876 3222211 1223344444444 4556666655
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
++.+++|++... .....+...+...+.+++|+| ++..++++ .|+.|++||++ .+..... +.+|..
T Consensus 162 -dg~v~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~-------~~~~~~ 229 (814)
T 3mkq_A 162 -DRTVKVWSLGQS---TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT-------LEGHMS 229 (814)
T ss_dssp -TSEEEEEETTCS---SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT-TTEEEEE-------EECCSS
T ss_pred -CCeEEEEECCCC---cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC-CCcEEEE-------EcCCCC
Confidence 789999998754 333444345568999999999 99999999 99999999998 4555554 567899
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC--EEEEEe
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRD 342 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~ 342 (497)
.|.+++|+|++ .+|++++.||.|++||+.+++.. ..+.. |...+.+++|+|++. +++++.
T Consensus 230 ~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 230 NVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVE----KTLNV-------------GLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp CEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEE----EEECC-------------SSSSEEEEEECTTCGGGEEEEEE
T ss_pred CEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEeec-------------CCCcEEEEEEccCCCceEEEEEe
Confidence 99999999999 99999999999999999987644 33333 346899999999987 577788
Q ss_pred cCeEEEEecCCCCceeeeeeeccccccc-----------------ccccCC-----------CCCccceeEEEEcCCCCE
Q 010933 343 YMNLKLWDIRMDSTPVATFKIHEHLRPK-----------------LCDLYN-----------NDSIFDKFECSVSGDGLH 394 (497)
Q Consensus 343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~-----------~~~~~~~~~~~~s~~~~~ 394 (497)
++.+.+|++.. ......+......+.. ...... ......+.+++|+|+|++
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 370 (814)
T 3mkq_A 292 DNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF 370 (814)
T ss_dssp TTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSE
T ss_pred CCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCE
Confidence 88999999865 3322222100000000 000000 001112368999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeE
Q 010933 395 FATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLL 473 (497)
Q Consensus 395 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~ 473 (497)
|++++ |+.+.+|++..... .+.+++.+++|+| ++.. +++++.++. .+|. ...++...|.
T Consensus 371 la~~~-~~~~~i~~~~~~~~------~~~~~i~~~~~sp--dg~~-----la~~~~~g~v~l~~------~~~~~~~~v~ 430 (814)
T 3mkq_A 371 VTVVG-DGEYVIYTALAWRN------KAFGKCQDFVWGP--DSNS-----YALIDETGQIKYYK------NFKEVTSWSV 430 (814)
T ss_dssp EEEEE-TTEEEEEETTTTEE------EEEEECSEEEECT--TSSC-----EEEECTTCCEEEEE------TTEECTTCCC
T ss_pred EEEec-CCEEEEEECccccc------cCCCceEEEEEeC--CCCe-----EEEEeCCCcEEEEE------CCCCccceEE
Confidence 99998 89999999864421 2356788999998 6666 999999998 9992 3345667888
Q ss_pred EEEEecCC---CEEEEEe-CCceEEEe
Q 010933 474 HLAWHPTT---NLIACAN-GNSLFFHY 496 (497)
Q Consensus 474 ~l~~~p~~---~~la~~~-~~~~~i~~ 496 (497)
+++|+|++ ..|++++ ++.+++|.
T Consensus 431 ~~~~s~dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 431 PMHSAIDRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp CCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred cCCcCccceecceEEEEecCCEEEEEE
Confidence 99999998 4566555 67799996
No 70
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.9e-34 Score=273.52 Aligned_cols=278 Identities=13% Similarity=0.187 Sum_probs=226.9
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 113 (497)
.++.|+||++ ++||+|. |++|+|||..+++. ..+..+.+|. ..|+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~---------------------~~~~~~~~~~------------~~V~ 151 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDI---------------------LQLLQMEQPG------------EYIS 151 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCE---------------------EEEEECCSTT------------CCEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCE---------------------EEEEEecCCC------------CcEE
Confidence 4578999985 5888875 89999999998854 2223345666 8899
Q ss_pred EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933 114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 193 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (497)
+|+| +|++.+|++|+.|+.|++||+.+++..
T Consensus 152 sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~----------------------------------------------- 182 (420)
T 4gga_A 152 SVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRL----------------------------------------------- 182 (420)
T ss_dssp EEEE--CTTSSEEEEEETTSCEEEEETTTTEEE-----------------------------------------------
T ss_pred EEEE--CCCCCEEEEEECCCeEEEEEcCCCcEE-----------------------------------------------
Confidence 9999 689999999999999999999877633
Q ss_pred EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe
Q 010933 194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 272 (497)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 272 (497)
+.+ .+|...+.+++++ +..+++| .|+.+++||.......... +.+|...+..+.++
T Consensus 183 -------------~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 183 -------------RNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWA 239 (420)
T ss_dssp -------------EEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEEC
T ss_pred -------------EEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE-------ecccccceeeeeec
Confidence 222 7899999888775 6789999 9999999999855555544 67899999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEE---ecCeEEE
Q 010933 273 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR---DYMNLKL 348 (497)
Q Consensus 273 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~---~~~~i~l 348 (497)
|++ .++++++.|+.+++||..+++......... ..|...|.+++|+|++. +++++ .|+.|++
T Consensus 240 ~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-------------~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i 305 (420)
T 4gga_A 240 PDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF-------------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305 (420)
T ss_dssp TTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEE-------------CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred CCC-CeeeeeeccccceEEeeccccccceeeeee-------------cccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence 999 999999999999999998875432222222 34568899999999765 55554 2599999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcceEEEeccCcce
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNEN 426 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~vw~~~~~~~~~~~~~~~~~~v 426 (497)
||+.+ ++++..+..+... .++.|+|+++.|++++ .|+.|+|||+.+++.+ ..+.+|.++|
T Consensus 306 wd~~t-~~~~~~~~~~~~v----------------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v-~~l~gH~~~V 367 (420)
T 4gga_A 306 WNVCS-GACLSAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRV 367 (420)
T ss_dssp EETTT-TEEEEEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-EEECCCSSCE
T ss_pred EeCCc-cccceeeccccce----------------eeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE-EEEcCCCCCE
Confidence 99997 8888888776653 5899999999988765 7999999999998554 8899999999
Q ss_pred eeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 427 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
++++|+| ++.. |++|+.|+. ++|.
T Consensus 368 ~~l~~sp--dg~~-----l~S~s~D~tvriWd 392 (420)
T 4gga_A 368 LSLTMSP--DGAT-----VASAAADETLRLWR 392 (420)
T ss_dssp EEEEECT--TSSC-----EEEEETTTEEEEEC
T ss_pred EEEEEcC--CCCE-----EEEEecCCeEEEEE
Confidence 9999999 6777 999999999 9994
No 71
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-35 Score=279.94 Aligned_cols=320 Identities=8% Similarity=-0.004 Sum_probs=222.9
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...|.+++|||||+++|+++.|++|+ |.+.++ .+.+|. ..
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------------------------~l~gh~------------~~ 54 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------------------------DINCNS------------KN 54 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------------------------CCSSBG------------GG
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc--------------------------eecCCC------------cc
Confidence 47899999999999999999999999 754432 235666 56
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
|++++| +|+| .++.+.+|+.+....... .++..+....+++++..+++++. ++.
T Consensus 55 v~~V~F--sPdg-------~~~~~~~~~~~~~~~~~~---------------~~~~~V~~vawSPdG~~LAs~s~--dg~ 108 (588)
T 2j04_A 55 LFHVKE--FPLE-------FENKLDFELAQQNGLLNS---------------QPVCYPRVCKPSPIDDWMAVLSN--NGN 108 (588)
T ss_dssp TEEEEE--ECCC-------CCCTTTTSCCCSSCSSTT---------------SCSCCEEEEEECSSSSCEEEEET--TSC
T ss_pred EEEEEE--CCCC-------CcceEEEEeCCCceEeec---------------CCCCcEEEEEECCCCCEEEEEeC--CCc
Confidence 666666 3454 344444443322111110 11234555555666666666654 666
Q ss_pred eEEEeecCCccceeeeeeccCCCC-----CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce------eeEEeecCCCcc
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDF-----NINSISNNSDCETFVSA-DDLRINLWNLEISDQ------CFNIVDMKPSNM 259 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~------~~~~~~~~~~~~ 259 (497)
+++|+... ++..+ . |.. .+.+++|+|+|+.|++| .||+|++||+..+.. .+..+.. ..
T Consensus 109 V~iwd~~~-----~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~---~~ 178 (588)
T 2j04_A 109 VSVFKDNK-----MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL---SD 178 (588)
T ss_dssp EEEEETTE-----EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC---SC
T ss_pred EEEEeCCc-----eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec---cc
Confidence 66666432 33333 4 554 59999999999999999 999999999984321 2333211 13
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
.+|...|.+++|+|+| +++++.|+.|++||+.++... ...+.+. .+|...|.+++|+ |++||
T Consensus 179 ~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL~------------~~h~~~V~svaFs--g~~LA 240 (588)
T 2j04_A 179 AGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMIQ------------NASRRKITDLKIV--DYKVV 240 (588)
T ss_dssp TTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEEE------------CCCSSCCCCEEEE--TTEEE
T ss_pred ccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeeec------------ccccCcEEEEEEE--CCEEE
Confidence 6788999999999986 889999999999999876521 0001221 1345789999999 68999
Q ss_pred EEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE--cCCCCEEEEEeCCCcEEEEEcCCCCcceE
Q 010933 340 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV--SGDGLHFATGSYSNLLRIFSHGVGSAGGI 417 (497)
Q Consensus 340 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 417 (497)
+++++.|++||+.. ++......+|...+ .+++| +||++.|+++++||. ++|..+
T Consensus 241 Sa~~~tIkLWd~~~-~~~~~~~~gh~~~V---------------~~va~~~s~d~~~La~a~edG~-klw~~d------- 296 (588)
T 2j04_A 241 LTCPGYVHKIDLKN-YSISSLKTGSLENF---------------HIIPLNHEKESTILLMSNKTSY-KVLLED------- 296 (588)
T ss_dssp EECSSEEEEEETTT-TEEEEEECSCCSCC---------------CEEEETTCSSCEEEEECSSCEE-EEEESS-------
T ss_pred EEeCCeEEEEECCC-CeEEEEEcCCCceE---------------EEEEeeeCCCCCEEEEEcCCCC-EEEeec-------
Confidence 98889999999984 44423333777754 68999 999999999999999 999987
Q ss_pred EEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecCCCEEEEEe
Q 010933 418 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 488 (497)
Q Consensus 418 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~ 488 (497)
.+.++| ++.. +++. |+. ++|...............|.+++|+|||+.+|+++
T Consensus 297 ----------~~~~sp--d~~l-----~a~~--d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 ----------ELHVTA--DNII-----APYL--EKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ----------SEEEEC--CCSS-----HHHH--HHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred ----------cEEECC--CceE-----EEEc--CCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 144666 5554 4543 777 99954333233444467899999999999999987
No 72
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.1e-34 Score=270.44 Aligned_cols=285 Identities=10% Similarity=0.027 Sum_probs=225.7
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|.+.|++++|+|+|++|++|+.||.|+||++.+++. ......+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~--------------------~~~~~~~~~~~------------ 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK--------------------NVDLLQSLRYK------------ 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT--------------------EEEEEEEEECS------------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc--------------------cccceeeeecC------------
Confidence 5899999999999999999999999999999987641 01233445787
Q ss_pred cceeEEEEEecCCCC-EEEEEeCCccEEEeec-CchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 110 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~-~l~s~s~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..|.+++|+ +++. +|++++.|+.|++|++ .+++...
T Consensus 57 ~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~---------------------------------------- 94 (342)
T 1yfq_A 57 HPLLCCNFI--DNTDLQIYVGTVQGEILKVDLIGSPSFQA---------------------------------------- 94 (342)
T ss_dssp SCEEEEEEE--ESSSEEEEEEETTSCEEEECSSSSSSEEE----------------------------------------
T ss_pred CceEEEEEC--CCCCcEEEEEcCCCeEEEEEeccCCceEe----------------------------------------
Confidence 889999994 6789 9999999999999999 7665321
Q ss_pred cCcceEEEeecCCccceeeeeeccC--CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC--------ceeeEEeecCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------DQCFNIVDMKP 256 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~--------~~~~~~~~~~~ 256 (497)
+.+ |...|.+++|+| ++.++++ .|+.|++||++.. .+...
T Consensus 95 ----------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~------ 145 (342)
T 1yfq_A 95 ----------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN------ 145 (342)
T ss_dssp ----------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS------
T ss_pred ----------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee------
Confidence 156 899999999999 9999999 9999999998831 22222
Q ss_pred CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEee-C
Q 010933 257 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-D 334 (497)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~ 334 (497)
.+. |...|.+++|+|++ +++++.|+.|++||+++ +.... .... ..|...+.+++|+| +
T Consensus 146 -~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~~~~------------~~~~~~i~~i~~~~~~ 205 (342)
T 1yfq_A 146 -NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---TIEE------------SGLKYQIRDVALLPKE 205 (342)
T ss_dssp -SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---EEEE------------CSCSSCEEEEEECSGG
T ss_pred -EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---eeee------------cCCCCceeEEEECCCC
Confidence 233 88999999999874 99999999999999987 54221 1111 22456899999999 9
Q ss_pred CCEEEEEec-CeEEEEecCCC-----CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 335 GQHLLSRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 335 g~~l~~~~~-~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
++++++++. |.|++|+++.. .+....+..|..... .......+++++|+|++++|++++.||.|++||
T Consensus 206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence 999999865 99999999874 277788887754110 000111237999999999999999999999999
Q ss_pred cCCCCcceEEEecc-CcceeeeEeecCCCcccccccceeEeeccCc
Q 010933 409 HGVGSAGGITVEAG-KNENRKPILQAAPRARRSSLSNLTRGLYRQA 453 (497)
Q Consensus 409 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~ 453 (497)
+.+++. ...+.+| ..+|.+++ + ++.+ |++++.|+.
T Consensus 280 ~~~~~~-~~~~~~~h~~~v~~~~--~--~~~~-----l~s~s~Dg~ 315 (342)
T 1yfq_A 280 LQTRKK-IKNFAKFNEDSVVKIA--C--SDNI-----LCLATSDDT 315 (342)
T ss_dssp TTTTEE-EEECCCCSSSEEEEEE--E--CSSE-----EEEEEECTH
T ss_pred CccHhH-hhhhhcccCCCceEec--C--CCCe-----EEEEecCCc
Confidence 998854 4788898 99999999 4 6666 999999987
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-34 Score=274.73 Aligned_cols=271 Identities=12% Similarity=0.147 Sum_probs=207.5
Q ss_pred eEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc-cCccccccccccccccee
Q 010933 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 35 I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~i~ 113 (497)
+.+++|++ +.+++++.|+.|++||+.+++. ...+.. |. ..|.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~-----------------------~~~~~~~~~------------~~v~ 138 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSV-----------------------SALAETDES------------TYVA 138 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCE-----------------------EEEEECCTT------------CCEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcE-----------------------eEeeecCCC------------CCEE
Confidence 44566665 5578888999999999988753 233333 66 8899
Q ss_pred EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933 114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 193 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (497)
+++| +|++.+|++++.||.|++||+.+++..
T Consensus 139 ~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------------------------------- 169 (401)
T 4aez_A 139 SVKW--SHDGSFLSVGLGNGLVDIYDVESQTKL----------------------------------------------- 169 (401)
T ss_dssp EEEE--CTTSSEEEEEETTSCEEEEETTTCCEE-----------------------------------------------
T ss_pred EEEE--CCCCCEEEEECCCCeEEEEECcCCeEE-----------------------------------------------
Confidence 9999 689999999999999999999876532
Q ss_pred EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe
Q 010933 194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 272 (497)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 272 (497)
..+ .+|...|.+++| +++.+++| .|+.|++||++........ +.+|...|.+++|+
T Consensus 170 -------------~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 170 -------------RTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT-------LQGHSSEVCGLAWR 226 (401)
T ss_dssp -------------EEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEEC
T ss_pred -------------EEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE-------EcCCCCCeeEEEEc
Confidence 222 688999999999 45789998 9999999999855555544 67899999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEEe---cCeEEE
Q 010933 273 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD---YMNLKL 348 (497)
Q Consensus 273 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~---~~~i~l 348 (497)
|++ .+|++++.|+.|++||+++++.. ..+. .|...|.+++|+|++. ++++++ ++.|++
T Consensus 227 ~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~-------------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 227 SDG-LQLASGGNDNVVQIWDARSSIPK----FTKT-------------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp TTS-SEEEEEETTSCEEEEETTCSSEE----EEEC-------------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred CCC-CEEEEEeCCCeEEEccCCCCCcc----EEec-------------CCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 999 99999999999999999986543 2332 3567899999999774 566654 699999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEE--eCCCcEEEEEcCCCCcc-eEEEeccCcc
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVGSAG-GITVEAGKNE 425 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~vw~~~~~~~~-~~~~~~~~~~ 425 (497)
||+.+ ++++..+..+.. +.+++|+|++++|+++ +.||.|++|++.+++.. ...+.+|...
T Consensus 289 ~d~~~-~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~ 351 (401)
T 4aez_A 289 WNAAT-GARVNTVDAGSQ----------------VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR 351 (401)
T ss_dssp EETTT-CCEEEEEECSSC----------------EEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC
T ss_pred EECCC-CCEEEEEeCCCc----------------EEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC
Confidence 99986 788887764432 2699999999999984 48999999999876333 2234566665
Q ss_pred eeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+..++++| ++.. +++++.|+. ++|
T Consensus 352 v~~~~~s~--dg~~-----l~s~~~dg~i~iw 376 (401)
T 4aez_A 352 VLYSALSP--DGRI-----LSTAASDENLKFW 376 (401)
T ss_dssp CCEEEECT--TSSE-----EEEECTTSEEEEE
T ss_pred EEEEEECC--CCCE-----EEEEeCCCcEEEE
Confidence 55555555 3444 555555555 555
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7e-34 Score=274.84 Aligned_cols=285 Identities=14% Similarity=0.179 Sum_probs=219.2
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
..+....|+|+|++||+|+.||.|++||+.+++ ....+.+|. ..|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v 142 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----------------------QREIDQAHV------------SEI 142 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----------------------EEEETTSSS------------SCE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----------------------eeeeccccc------------Ccc
Confidence 555666889999999999999999999988764 356677898 899
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
.+++| +|++.+|++++.|+.|++||+.+++..
T Consensus 143 ~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~---------------------------------------------- 174 (420)
T 3vl1_A 143 TKLKF--FPSGEALISSSQDMQLKIWSVKDGSNP---------------------------------------------- 174 (420)
T ss_dssp EEEEE--CTTSSEEEEEETTSEEEEEETTTCCCC----------------------------------------------
T ss_pred EEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCc----------------------------------------------
Confidence 99999 688999999999999999999876522
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC------
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV------ 265 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------ 265 (497)
..+ .+|...|.+++|+|+++.|+++ .|+.|++||++ .++....+.. ...+...
T Consensus 175 --------------~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~----~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 175 --------------RTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNR----KENPHDGVNSIAL 234 (420)
T ss_dssp --------------EEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECB----TTBTTCCEEEEEE
T ss_pred --------------eEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeec----CCCCCCCccEEEE
Confidence 222 6899999999999999999999 99999999999 5555554321 1123344
Q ss_pred ---------------eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933 266 ---------------ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 266 ---------------i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
+.+++|+|++ .+|++++.||.|++||+++++.. ..+. ..|...+.+++
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~------------~~~~~~v~~~~ 297 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQLP------------SKFTCSCNSLT 297 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEEC------------CTTSSCEEEEE
T ss_pred ecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEcc------------cccCCCceeEE
Confidence 4445557888 89999999999999999987643 2211 23457899999
Q ss_pred EeeCCC-EEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 331 FANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 331 ~s~~g~-~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
|+|+++ +|++|+. |.|++||+++...++..+..|.... +..+ +.+++++|++++.||.|++|+
T Consensus 298 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 298 VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTEEEEEETTTEEEEEEE
T ss_pred EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCCEEEEecCCccEEEEe
Confidence 999998 8888864 9999999987445677887754321 1455 556889999999999999999
Q ss_pred cCCCCc--------ceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 409 HGVGSA--------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 409 ~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+..... ....+..|...+..++|+|. +.. .+.+++.+.+|. .+|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~--~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD--DES--NGEVLEVGKNNFCALY 415 (420)
T ss_dssp ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC--SSS--SCEEEEEETTTEEEEE
T ss_pred ccCCCCCccceeccCccEEccCCcceEEEEEccC--CCC--cceEEEEcCCceEEEE
Confidence 987422 23457789999999999994 430 011455555666 888
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.7e-33 Score=267.36 Aligned_cols=282 Identities=9% Similarity=0.065 Sum_probs=224.7
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|++++| +|++++|++++.|+.|++||+.+++..
T Consensus 9 ~~i~~~~~--s~~~~~l~~~~~d~~v~i~~~~~~~~~------------------------------------------- 43 (372)
T 1k8k_C 9 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWV------------------------------------------- 43 (372)
T ss_dssp SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEE-------------------------------------------
T ss_pred CCeEEEEE--CCCCCEEEEEeCCCEEEEEeCCCCcEE-------------------------------------------
Confidence 88999999 689999999999999999999876411
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
++..+ .+|...|.+++|+|+++.|+++ .|+.|++||++ .++..... .+..|...|.+
T Consensus 44 ---------------~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~-----~~~~~~~~v~~ 101 (372)
T 1k8k_C 44 ---------------QVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-GRTWKPTL-----VILRINRAARC 101 (372)
T ss_dssp ---------------EEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-TTEEEEEE-----ECCCCSSCEEE
T ss_pred ---------------eeeee-cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC-CCeeeeeE-----EeecCCCceeE
Confidence 22222 6899999999999999999999 99999999998 44433321 25678999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+|++ .+|++++.|+.|++||++.+...... ..+ ..+|...+.+++|+|++++|++++ ++.|+
T Consensus 102 ~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 102 VRWAPNE-KKFAVGSGSRVISICYFEQENDWWVC-KHI------------KKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp EEECTTS-SEEEEEETTSSEEEEEEETTTTEEEE-EEE------------CTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEECCCC-CEEEEEeCCCEEEEEEecCCCcceee-eee------------ecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 9999999 99999999999999999876531100 111 123567899999999999999986 59999
Q ss_pred EEecCC-----------------CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 348 LWDIRM-----------------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 348 lwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
+||++. .++++..+..|...+ .+++|+|++++|++++.||.|++||+.
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV---------------HGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE---------------EEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred EEEcccccccccccccccccccchhhheEecCCCCCeE---------------EEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 999641 256777777776654 689999999999999999999999999
Q ss_pred CCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC--C--------------------------
Q 010933 411 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG--H-------------------------- 461 (497)
Q Consensus 411 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~--~-------------------------- 461 (497)
+++. ...+..|..++.++++++ ++.+ +++| .|+. ++|.... .
T Consensus 233 ~~~~-~~~~~~~~~~v~~~~~~~--~~~~-----l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (372)
T 1k8k_C 233 KKMA-VATLASETLPLLAVTFIT--ESSL-----VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 303 (372)
T ss_dssp GTTE-EEEEECSSCCEEEEEEEE--TTEE-----EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHH
T ss_pred CCce-eEEEccCCCCeEEEEEec--CCCE-----EEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhh
Confidence 8854 488899999999999998 5555 7776 7777 9993222 0
Q ss_pred ---------------cccccccCCCeEEEEEe-cCC---CEEEEEeCC-ceEEEe
Q 010933 462 ---------------HELSYNLSSKLLHLAWH-PTT---NLIACANGN-SLFFHY 496 (497)
Q Consensus 462 ---------------~~~~~~~~~~i~~l~~~-p~~---~~la~~~~~-~~~i~~ 496 (497)
.....+|...|++++|+ ++| .+|++++.| .+++|.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 304 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp HCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred hcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 11124899999999977 566 899999955 599996
No 76
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.9e-33 Score=259.22 Aligned_cols=245 Identities=14% Similarity=0.271 Sum_probs=201.5
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|...|.+++|+|+|++|++|+.|+.|++||+.+++ .+..+.+|.
T Consensus 63 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------------------~~~~~~~~~------------ 107 (312)
T 4ery_A 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-----------------------CLKTLKGHS------------ 107 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EEEEEECCS------------
T ss_pred cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc-----------------------EEEEEcCCC------------
Confidence 588999999999999999999999999999998764 367788898
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| +|++.+|++++.|+.|++||+.+++..
T Consensus 108 ~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~------------------------------------------- 142 (312)
T 4ery_A 108 NYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCL------------------------------------------- 142 (312)
T ss_dssp SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCCEE-------------------------------------------
T ss_pred CCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCEEE-------------------------------------------
Confidence 88999999 688999999999999999999876532
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
..+ ..|...|.+++|+|+++.|++| .|+.|++||++ .++....+ ...+...+..
T Consensus 143 -----------------~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~------~~~~~~~~~~ 197 (312)
T 4ery_A 143 -----------------KTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTL------IDDDNPPVSF 197 (312)
T ss_dssp -----------------EEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE------CCSSCCCEEE
T ss_pred -----------------EEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeEE------eccCCCceEE
Confidence 222 6888999999999999999999 99999999998 44444432 3456778999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+|++ .+|++++.|+.|++||+++++.. ..+..|... ...+......+++++|++|+ |+.|+
T Consensus 198 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~dg~i~ 262 (312)
T 4ery_A 198 VKFSPNG-KYILAATLDNTLKLWDYSKGKCL----KTYTGHKNE----------KYCIFANFSVTGGKWIVSGSEDNLVY 262 (312)
T ss_dssp EEECTTS-SEEEEEETTTEEEEEETTTTEEE----EEECSSCCS----------SSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred EEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEEEecCCc----------eEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 9999999 99999999999999999987654 444432110 01122223336788999885 59999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCcEEEEEcC
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG 410 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~vw~~~ 410 (497)
+||+++ ++.+..+.+|...+ .+++|+|++++|++++ .|+.|++|+.+
T Consensus 263 vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 263 IWNLQT-KEIVQKLQGHTDVV---------------ISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEETTT-CCEEEEECCCSSCE---------------EEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEECCC-chhhhhhhccCCcE---------------EEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999986 88899999998764 6899999999999987 69999999964
No 77
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8e-34 Score=266.80 Aligned_cols=271 Identities=13% Similarity=0.132 Sum_probs=209.1
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+|+|++||+|+.||.|+|||+.++.. ..+....+.+|.
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~------------ 57 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD------------ 57 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS------------
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC------------
Confidence 5999999999999999999999999999999987532 234567788898
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++|+|..++.+|++++.|+.|++||+..+......
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~---------------------------------------- 97 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG---------------------------------------- 97 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS----------------------------------------
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc----------------------------------------
Confidence 8999999953226899999999999999999876521100
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEe------ecCCCccC
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIV------DMKPSNMD 260 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~------~~~~~~~~ 260 (497)
...+++..+ ..|...|.+++|+|+ ++.|+++ .|+.|++||++... ....+ ........
T Consensus 98 -----------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 98 -----------RRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS-DLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp -----------CSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT-CTTCCEEEEEEESCSCCCS
T ss_pred -----------cCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH-HhccccccccccccccccC
Confidence 001233333 689999999999999 9999999 99999999998433 22111 11111234
Q ss_pred CCCCCeEEEEEeCC---CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC--
Q 010933 261 DLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-- 335 (497)
Q Consensus 261 ~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-- 335 (497)
.|...+.+++|+|+ + .+|++++.|+.+.+|+...++.. .... +.+|...|++++|+|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAK-------------LPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp SCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEE-------------CCCCCSCEEEEEECCCSSC
T ss_pred CcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeee-------------cCCCCcceeEEEECCCCCC
Confidence 68889999999997 6 89999999999988887765431 0012 24467899999999998
Q ss_pred --CEEEEEe-cCeEEEEecCCCC---------------------------------------------ceeeeeeecccc
Q 010933 336 --QHLLSRD-YMNLKLWDIRMDS---------------------------------------------TPVATFKIHEHL 367 (497)
Q Consensus 336 --~~l~~~~-~~~i~lwd~~~~~---------------------------------------------~~~~~~~~~~~~ 367 (497)
++|++++ |+.|++||++... +.+..+.+|...
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE 308 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC
T ss_pred cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc
Confidence 7888885 5999999997521 344555556554
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
+ ++++|+|++++|++|+.||.|++|++.+++..
T Consensus 309 v---------------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 309 V---------------WSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp E---------------EEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred E---------------EEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 3 79999999999999999999999999987543
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.6e-34 Score=269.51 Aligned_cols=285 Identities=14% Similarity=0.124 Sum_probs=221.4
Q ss_pred cceeEEEEEec--CCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 110 EKINRVRWCAA--PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 110 ~~i~~l~~~~s--~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
++|++++|+|. .....+++++.++.|++|++.+++.....
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~-------------------------------------- 60 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL-------------------------------------- 60 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE--------------------------------------
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee--------------------------------------
Confidence 89999999542 13456777777779999999876643211
Q ss_pred cCcceEEEeecCCccceeeeee-ccCCCCCeeEEEeCCC----CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933 188 ENMATKIANVGNSVHARCQKVY-PHAHDFNINSISNNSD----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (497)
..+ ...|...|.+++|+|+ +++|++| .|+.|++||+. .++.... +.+
T Consensus 61 -------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~-------~~~ 113 (366)
T 3k26_A 61 -------------------QSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI-TMQCIKH-------YVG 113 (366)
T ss_dssp -------------------EEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT-TCCEEEE-------EES
T ss_pred -------------------eeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch-hceEeee-------ecC
Confidence 111 1347789999999998 6689998 99999999998 4555544 568
Q ss_pred CCCCeEEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 262 LTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 262 ~~~~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
|...|.+++|+| ++ .+|++++.||.|++||+++++.. ..+.. +.+|...|.+++|+|++++|++
T Consensus 114 ~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~----------~~~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 114 HGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLV----AIFGG----------VEGHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp CCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEE----EEECS----------TTSCSSCEEEEEECTTSSEEEE
T ss_pred CCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEE----EEecc----------cccccCceeEEEECCCCCEEEE
Confidence 999999999999 77 99999999999999999987644 33311 1346688999999999999999
Q ss_pred Ee-cCeEEEEecCCCCceeeeeee----------------------------cccccccccccCCCCCccceeEEEEcCC
Q 010933 341 RD-YMNLKLWDIRMDSTPVATFKI----------------------------HEHLRPKLCDLYNNDSIFDKFECSVSGD 391 (497)
Q Consensus 341 ~~-~~~i~lwd~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 391 (497)
++ |+.|++||++. ++....+.. |... +.+++|+
T Consensus 179 ~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~-- 240 (366)
T 3k26_A 179 CGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY---------------VDCVRWL-- 240 (366)
T ss_dssp EETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC---------------CCEEEEE--
T ss_pred ecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcce---------------EEEEEEc--
Confidence 86 59999999986 554443332 3332 2689998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCc-------------ceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 392 GLHFATGSYSNLLRIFSHGVGSA-------------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 392 ~~~l~s~~~dg~i~vw~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
+++|++++.||.|++||+.++.. ....+..|..++..+++++..++.+ |++|+.|+. ++|.
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~-----l~~~~~dg~i~vwd 315 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM-----LALGNQVGKLYVWD 315 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE-----EEEECTTSCEEEEE
T ss_pred CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE-----EEEEecCCcEEEEE
Confidence 77999999999999999987643 2577889999999999999533777 999999999 9993
Q ss_pred CC--CCc----cccccc--CCCeEEEEEecCCCEEEEEeCC-ceEEEeC
Q 010933 458 SS--GHH----ELSYNL--SSKLLHLAWHPTTNLIACANGN-SLFFHYA 497 (497)
Q Consensus 458 ~~--~~~----~~~~~~--~~~i~~l~~~p~~~~la~~~~~-~~~i~~~ 497 (497)
.. +.. ..+..| ...|++++|+|++++||+++.| .+++|+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 32 222 134555 7899999999999999999955 5999973
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-33 Score=270.82 Aligned_cols=299 Identities=9% Similarity=0.087 Sum_probs=230.6
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
.....+.+|. +.|++++| +| .+|++++.||.|++|++.+++....
T Consensus 7 ~~~~~~~~h~------------~~i~~~~~--~~--~~l~s~~~dg~i~iw~~~~~~~~~~------------------- 51 (397)
T 1sq9_A 7 ATANAGKAHD------------ADIFSVSA--CN--SFTVSCSGDGYLKVWDNKLLDNENP------------------- 51 (397)
T ss_dssp EEEEESSCSS------------SCEEEEEE--CS--SEEEEEETTSEEEEEESBCCTTCCG-------------------
T ss_pred hhhhhhhhhh------------cCeEEEEe--cC--CeEEEEcCCCEEEEEECCCcccccC-------------------
Confidence 3456678898 99999999 45 6999999999999999987652110
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC----C---CEEEEE-cCCeEEE
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD----C---ETFVSA-DDLRINL 239 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~---~~l~~~-~d~~i~i 239 (497)
..++..+ .+|...|.+++|+|+ + +.|+++ .|+.|++
T Consensus 52 -----------------------------------~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 52 -----------------------------------KDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp -----------------------------------GGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred -----------------------------------CCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 0122223 689999999999999 9 999998 9999999
Q ss_pred EeCccCcee----eEEeecCCCccCCC-----CCCeEEEEEe----CCCCcE-EEEEeCCCeEEEEEccC------Cccc
Q 010933 240 WNLEISDQC----FNIVDMKPSNMDDL-----TEVITSAEFH----PIYCNL-LAYSSSRGFVRLVDMRQ------SALC 299 (497)
Q Consensus 240 wd~~~~~~~----~~~~~~~~~~~~~~-----~~~i~~~~~~----~~~~~~-l~~~~~dg~i~v~d~~~------~~~~ 299 (497)
||+...... ... +..| ...|.+++|+ |++ .+ |++++.||.|++||+++ ++..
T Consensus 96 w~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 96 YRITREDETKKVIFEK-------LDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp EEEEECTTTCCEEEEE-------ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred EEccCCccccccccee-------ecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 999843320 332 4566 5899999999 999 88 99999999999999988 4433
Q ss_pred cc-ccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeee---c---ccccccc
Q 010933 300 DH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI---H---EHLRPKL 371 (497)
Q Consensus 300 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~---~---~~~~~~~ 371 (497)
.- ....+... ......|...+.+++|+|++ ++++++. +.|++||+++ ++++..+.. | ...+
T Consensus 168 ~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i--- 236 (397)
T 1sq9_A 168 NWSPTLELQGT------VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSI--- 236 (397)
T ss_dssp CCCCEEEEEEE------ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCE---
T ss_pred eccCcceeeee------eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCcc---
Confidence 10 00012100 00012356789999999999 9998864 9999999986 888888887 6 5543
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcceEEEec-------------cCcceeeeEeecCC
Q 010933 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEA-------------GKNENRKPILQAAP 435 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~ 435 (497)
.+++|+|++++|++++.| |.|++||+.+++.+ ..+.+ |..++.+++|+|
T Consensus 237 ------------~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 301 (397)
T 1sq9_A 237 ------------RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSSWVMSLSFND-- 301 (397)
T ss_dssp ------------EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSSCEEEEEECS--
T ss_pred ------------ceEEECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCcccccccccccccCCcEEEEEECC--
Confidence 699999999999999999 99999999987544 77888 999999999998
Q ss_pred CcccccccceeEeeccCc-eecC--CCCCccccc------cc---------------CCCeEEEEEecCC----------
Q 010933 436 RARRSSLSNLTRGLYRQA-HENS--SSGHHELSY------NL---------------SSKLLHLAWHPTT---------- 481 (497)
Q Consensus 436 ~~~~~~~~~l~~~~~d~~-~iw~--~~~~~~~~~------~~---------------~~~i~~l~~~p~~---------- 481 (497)
++.+ |++++.|+. ++|. .++...... .| ...|++++|+|++
T Consensus 302 ~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 302 SGET-----LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp SSSE-----EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred CCCE-----EEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 6666 999999999 9993 333444444 56 8999999999998
Q ss_pred CEEEEEe-CCceEEEe
Q 010933 482 NLIACAN-GNSLFFHY 496 (497)
Q Consensus 482 ~~la~~~-~~~~~i~~ 496 (497)
++|++++ ++.+++|+
T Consensus 377 ~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFR 392 (397)
T ss_dssp CEEEEEETTTEEEEEE
T ss_pred ceEEEecCCCcEEEEE
Confidence 7999988 55599996
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-33 Score=290.16 Aligned_cols=259 Identities=19% Similarity=0.297 Sum_probs=204.3
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|...|++++|+|+|++|++|+.||.|+|||+.+++ ....+.+|.
T Consensus 427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~-----------------------~~~~~~~h~----------- 472 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV-----------------------STRRFVGHT----------- 472 (694)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS-----------
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-----------------------ceeEEeCCC-----------
Confidence 3699999999999999999999999999999998764 366788999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++| +|++++|++++.|++|++||+.........
T Consensus 473 -~~v~~~~~--s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~--------------------------------------- 510 (694)
T 3dm0_A 473 -KDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGECKYTIS--------------------------------------- 510 (694)
T ss_dssp -SCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEEC---------------------------------------
T ss_pred -CCEEEEEE--eCCCCEEEEEeCCCEEEEEECCCCcceeec---------------------------------------
Confidence 88999999 689999999999999999997543211110
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
....+|...|.+++|+|++ ..+++| .|+.|++||++ ..+.... +.+|...
T Consensus 511 -------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~-------~~~h~~~ 563 (694)
T 3dm0_A 511 -------------------EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRST-------LAGHTGY 563 (694)
T ss_dssp -------------------SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEE-------ECCCSSC
T ss_pred -------------------cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEE-------EcCCCCC
Confidence 0015788999999999986 578888 99999999998 4555544 6789999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCe
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 345 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 345 (497)
|.+++|+|++ .+|++++.||.|++||+++++.+ ..+.. ...+.+++|+|++.+++++.++.
T Consensus 564 v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l~~~~~~~ 624 (694)
T 3dm0_A 564 VSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEA--------------NSVIHALCFSPNRYWLCAATEHG 624 (694)
T ss_dssp EEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBC--------------SSCEEEEEECSSSSEEEEEETTE
T ss_pred EEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecC--------------CCcEEEEEEcCCCcEEEEEcCCC
Confidence 9999999999 99999999999999999988644 22222 25699999999999999998888
Q ss_pred EEEEecCCCCceeeeeeecccccccccc----cCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCD----LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
|++||+++ ++.+..+..+......... ......+..+++++|+|+|++|++|+.||.|+||++.
T Consensus 625 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 625 IKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99999986 7777766543221100000 0000111124689999999999999999999999985
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-33 Score=267.36 Aligned_cols=254 Identities=15% Similarity=0.252 Sum_probs=200.6
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|...|++++|+|+|++||+|+.||.|++||+.+++. +..+.+|.
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~------------ 176 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----------------------LRTMAGHQ------------ 176 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS------------
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----------------------EEEecCCC------------
Confidence 3788999999999999999999999999999987643 66778898
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| + +..|++++.|+.|++||+.....
T Consensus 177 ~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~-------------------------------------------- 208 (401)
T 4aez_A 177 ARVGCLSW--N--RHVLSSGSRSGAIHHHDVRIANH-------------------------------------------- 208 (401)
T ss_dssp SCEEEEEE--E--TTEEEEEETTSEEEEEETTSSSC--------------------------------------------
T ss_pred CceEEEEE--C--CCEEEEEcCCCCEEEEecccCcc--------------------------------------------
Confidence 88999999 2 46999999999999999974331
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.+..+ .+|...|.+++|+|+++.|++| .|+.|++||++ .+..... +..|...|.+
T Consensus 209 ---------------~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~-------~~~~~~~v~~ 264 (401)
T 4aez_A 209 ---------------QIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFT-------KTNHNAAVKA 264 (401)
T ss_dssp ---------------EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEE-------ECCCSSCCCE
T ss_pred ---------------eeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEE-------ecCCcceEEE
Confidence 12222 6899999999999999999999 99999999999 4444443 5679999999
Q ss_pred EEEeCCCCcEEEEEe--CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe---c
Q 010933 269 AEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y 343 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~ 343 (497)
++|+|++..++++++ .|+.|++||+++++.. ..+.. ...+.+++|+|++++++++. +
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~~--------------~~~v~~~~~s~~~~~l~~~~g~~d 326 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVDA--------------GSQVTSLIWSPHSKEIMSTHGFPD 326 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEEC--------------SSCEEEEEECSSSSEEEEEECTTT
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEeC--------------CCcEEEEEECCCCCeEEEEeecCC
Confidence 999998867788776 7999999999987654 33332 35799999999999999843 5
Q ss_pred CeEEEEecCCCCceeee--eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933 344 MNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 421 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 421 (497)
+.|++||+.. ++.... +.+|...+ ++++|+|++++|++++.||.|++|++.+++.+...+..
T Consensus 327 g~i~v~~~~~-~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 390 (401)
T 4aez_A 327 NNLSIWSYSS-SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPI 390 (401)
T ss_dssp CEEEEEEEET-TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEEEEEECCC----------
T ss_pred CcEEEEecCC-ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccc
Confidence 9999999986 544443 55676654 68999999999999999999999999988665444433
Q ss_pred cCc
Q 010933 422 GKN 424 (497)
Q Consensus 422 ~~~ 424 (497)
+..
T Consensus 391 ~~~ 393 (401)
T 4aez_A 391 TKT 393 (401)
T ss_dssp ---
T ss_pred cCC
Confidence 333
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=253.91 Aligned_cols=278 Identities=13% Similarity=0.185 Sum_probs=217.9
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 113 (497)
..++|+||+++ +||+|. |++|+|||+++++. .....+.+|. ..|+
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~---------------------~~~~~~~~~~------------~~V~ 71 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDI---------------------LQLLQMEQPG------------EYIS 71 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCE---------------------EEEEECCSTT------------CCEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCE---------------------EEEEEecCCC------------CeEE
Confidence 35789999986 777765 89999999998754 1122344666 8899
Q ss_pred EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933 114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 193 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (497)
+++| +|++++|++|+.|++|++|++.+++...
T Consensus 72 ~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~---------------------------------------------- 103 (318)
T 4ggc_A 72 SVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLR---------------------------------------------- 103 (318)
T ss_dssp EEEE--CTTSSEEEEEETTSEEEEEETTTTEEEE----------------------------------------------
T ss_pred EEEE--CCCCCEEEEEECCCcEEEeecCCceeEE----------------------------------------------
Confidence 9999 6899999999999999999998876332
Q ss_pred EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe
Q 010933 194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 272 (497)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 272 (497)
.+ .+|...+.++.+ ++..++++ .++.+++|+.......... +.+|...+..+.+.
T Consensus 104 --------------~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 104 --------------NM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCGLRWA 159 (318)
T ss_dssp --------------EE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEEEEC
T ss_pred --------------Ee-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE-------EcCccCceEEEEEc
Confidence 22 678887776554 56789999 9999999999855555544 67899999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE-E--Ee-cCeEEE
Q 010933 273 PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-S--RD-YMNLKL 348 (497)
Q Consensus 273 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~--~~-~~~i~l 348 (497)
+++ .+|++++.|+.|++||+++++......... ..+...+.++.++|++..++ . ++ ++.|++
T Consensus 160 ~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l 225 (318)
T 4ggc_A 160 PDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF-------------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225 (318)
T ss_dssp TTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEE-------------CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred CCC-CEEEEEecCcceeEEECCCCcccccceeee-------------cccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence 999 999999999999999999876432221222 23457899999999775443 2 33 389999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcceEEEeccCcce
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNEN 426 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~vw~~~~~~~~~~~~~~~~~~v 426 (497)
||.+. .........+.. + ..+.|+|+++.+++++ .|+.|++||+.+++.+ ..+++|.++|
T Consensus 226 wd~~~-~~~~~~~~~~~~-v---------------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~-~~l~gH~~~V 287 (318)
T 4ggc_A 226 WNVCS-GACLSAVDAHSQ-V---------------CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-AELKGHTSRV 287 (318)
T ss_dssp EETTT-CCEEEEEECSSC-E---------------EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-EEECCCSSCE
T ss_pred Eeccc-ccccccccceee-e---------------eeeeecccccceEEEEEcCCCEEEEEECCCCcEE-EEEcCCCCCE
Confidence 99986 555544443332 2 5899999999887655 7999999999998554 8899999999
Q ss_pred eeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 427 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
++++|+| ++.+ |++|+.|+. ++|.
T Consensus 288 ~~l~~sp--dg~~-----l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 288 LSLTMSP--DGAT-----VASAAADETLRLWR 312 (318)
T ss_dssp EEEEECT--TSSC-----EEEEETTTEEEEEC
T ss_pred EEEEEcC--CCCE-----EEEEecCCeEEEEE
Confidence 9999999 6777 999999999 9994
No 83
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7e-33 Score=254.45 Aligned_cols=247 Identities=14% Similarity=0.138 Sum_probs=197.6
Q ss_pred ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933 91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 170 (497)
Q Consensus 91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (497)
..+.+|. +.|++++| ++++++|++++.|++|++|++.++..
T Consensus 3 ~~~~~h~------------~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~------------------------- 43 (297)
T 2pm7_B 3 VIANAHN------------EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETH------------------------- 43 (297)
T ss_dssp EECCSCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCB-------------------------
T ss_pred eeccCCc------------CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCc-------------------------
Confidence 3467888 89999999 78999999999999999999874321
Q ss_pred ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCc-
Q 010933 171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISD- 246 (497)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~- 246 (497)
+++.++ .+|...|++++|+++ ++.|++| .|++|++||++...
T Consensus 44 ---------------------------------~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 44 ---------------------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89 (297)
T ss_dssp ---------------------------------CCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred ---------------------------------EEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence 122333 799999999999863 8899999 99999999998432
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 324 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (497)
..... +.+|...|.+++|+|+ + .+|++++.|+.|++||++++.... ... +.+|..
T Consensus 90 ~~~~~-------~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~~-------------~~~h~~ 146 (297)
T 2pm7_B 90 SQIAV-------HAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PII-------------IDAHAI 146 (297)
T ss_dssp CCCEE-------ECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CEE-------------EECCSS
T ss_pred EEEEE-------eecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--eee-------------eecccC
Confidence 12222 5679999999999997 7 899999999999999998753210 012 244668
Q ss_pred cccEEEEeeC-------------CCEEEEEe-cCeEEEEecCCCCc----eeeeeeecccccccccccCCCCCccceeEE
Q 010933 325 SISDIKFAND-------------GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFEC 386 (497)
Q Consensus 325 ~i~~~~~s~~-------------g~~l~~~~-~~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (497)
.+.+++|+|+ +++|++|+ |+.|++||++. ++ ....+.+|...+ +++
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~V---------------~~v 210 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDWV---------------RDV 210 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSCE---------------EEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCce---------------EEE
Confidence 8999999997 56888885 59999999986 44 556778888765 799
Q ss_pred EEcCCC---CEEEEEeCCCcEEEEEcCCCCc--ceEEE--eccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 387 SVSGDG---LHFATGSYSNLLRIFSHGVGSA--GGITV--EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 387 ~~s~~~---~~l~s~~~dg~i~vw~~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+|+|++ ++|++++.|++|+|||+++... ....+ ..|...+.+++|+| ++.. |++++.|+. ++|
T Consensus 211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~-----las~~~D~~v~lw 281 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNV-----LALSGGDNKVTLW 281 (297)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS--SSCC-----EEEEETTSCEEEE
T ss_pred EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC--CCCE-----EEEEcCCCcEEEE
Confidence 999984 8999999999999999987532 12233 56888999999999 6666 999999999 999
No 84
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=262.91 Aligned_cols=292 Identities=13% Similarity=0.147 Sum_probs=220.9
Q ss_pred cCCcceEEEEEcCC---CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 30 QDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 30 ~h~~~I~~i~~sp~---g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
.|.+.|+|++|+|+ |++||+|+.||.|+|||+.+... .....+.+|.
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~--------- 86 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------------TIPKAQQMHT--------- 86 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------------EEEEEEEECS---------
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------------eeEEEecccc---------
Confidence 58999999999999 69999999999999999987322 2236678898
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..|.+++| +|++++|++++.|+.|++||+.+++....
T Consensus 87 ---~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-------------------------------------- 123 (368)
T 3mmy_A 87 ---GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQI-------------------------------------- 123 (368)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE--------------------------------------
T ss_pred ---CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceee--------------------------------------
Confidence 88999999 68999999999999999999987663321
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEe--CCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISN--NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
..|...|.+++| +++++.|+++ .|+.|++||++ .++.... +..+
T Consensus 124 ------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~-------~~~~- 170 (368)
T 3mmy_A 124 ------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR-SSNPMMV-------LQLP- 170 (368)
T ss_dssp ------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS-CSSCSEE-------EECS-
T ss_pred ------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC-CCcEEEE-------EecC-
Confidence 478899999999 8999999999 99999999998 4444443 2223
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE----EE
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH----LL 339 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~----l~ 339 (497)
..+.++.+.+ ..+++++.++.+++||++....... .... .+.....++.+.++... ++
T Consensus 171 ~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 171 ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---RIES------------PLKHQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---ECCC------------SCSSCEEEEEEEECTTSCEEEEE
T ss_pred CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---hccc------------cccCCCceEEEcccCCCCCCeEE
Confidence 3566666664 5688899999999999987543211 1111 11245667777766654 77
Q ss_pred EEe-cCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce
Q 010933 340 SRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 416 (497)
Q Consensus 340 ~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~ 416 (497)
+++ ++.|++||++... ..+..+..|........ .......+++++|+|++++|++|+.||.|++||+.+++. .
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~-~ 308 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS---APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK-L 308 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSEEEECSEEC----C---CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE-E
T ss_pred EecCCCcEEEEecCCCCccccceeeeeeeccccccc---ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE-E
Confidence 765 5999999998622 45667777764210000 000000137999999999999999999999999998744 4
Q ss_pred EEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 417 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 417 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
..+.+|..++.+++|+| ++.+ |++++.|+. +.|
T Consensus 309 ~~~~~~~~~v~~~~~s~--~g~~-----l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 309 KTSEQLDQPISACCFNH--NGNI-----FAYASSYDWSKGH 342 (368)
T ss_dssp EECCCCSSCEEEEEECT--TSSC-----EEEEECCCSTTCG
T ss_pred EEecCCCCCceEEEECC--CCCe-----EEEEecccccccc
Confidence 88899999999999999 6777 999998876 444
No 85
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=262.86 Aligned_cols=280 Identities=12% Similarity=0.110 Sum_probs=215.1
Q ss_pred cceeEEEEEecCCCCEEE-EEeC---CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 110 EKINRVRWCAAPNGSMFI-LSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~-s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..|.+++| +|++..++ +++. |+.|++|++.+++....
T Consensus 19 ~~v~~~~~--~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------------------------- 59 (357)
T 3i2n_A 19 YTVFDCKW--VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------------------------- 59 (357)
T ss_dssp SCEEEEEE--CTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-------------------------------------
T ss_pred CceEEEEE--cCCCceEEEecCccCCCcEEEEEeCCCCcccce-------------------------------------
Confidence 89999999 67776665 4554 99999999987663221
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (497)
. ..+|...|.+++|+|+ ++.|++| .|+.|++||+......... +.+
T Consensus 60 ---------------------~--~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~ 109 (357)
T 3i2n_A 60 ---------------------R--EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS-------VKG 109 (357)
T ss_dssp ---------------------E--EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE-------ECC
T ss_pred ---------------------e--eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE-------EEe
Confidence 1 1378889999999998 6999999 9999999999954424443 678
Q ss_pred CCCCeEEEEE------eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE----E
Q 010933 262 LTEVITSAEF------HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK----F 331 (497)
Q Consensus 262 ~~~~i~~~~~------~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~ 331 (497)
|...|.+++| +|++ .+|++++.||.|++||+++++... ..+..|.. .+...+.+++ |
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~---------~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPV---ANMEPVQG---------ENKRDCWTVAFGNAY 176 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCS---EEECCCTT---------SCCCCEEEEEEECCC
T ss_pred cccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcc---eeccccCC---------CCCCceEEEEEEecc
Confidence 9999999965 6788 899999999999999999875221 33332110 0124688888 7
Q ss_pred eeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC---CCCEEEEEeCCCcEEEE
Q 010933 332 ANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYSNLLRIF 407 (497)
Q Consensus 332 s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~s~~~dg~i~vw 407 (497)
+|++++|++++. +.|++||++. ++... ...|...+ .+++|+| ++++|++++.||.|++|
T Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~~v---------------~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 177 NQEERVVCAGYDNGDIKLFDLRN-MALRW-ETNIKNGV---------------CSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp C-CCCEEEEEETTSEEEEEETTT-TEEEE-EEECSSCE---------------EEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred CCCCCEEEEEccCCeEEEEECcc-Cceee-ecCCCCce---------------EEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 889999999865 9999999986 55533 34455433 6999999 99999999999999999
Q ss_pred EcCCCCcceEE-----EeccCcceeeeEeecCCCcc-cccccceeEeeccCc-eecCCC---------------------
Q 010933 408 SHGVGSAGGIT-----VEAGKNENRKPILQAAPRAR-RSSLSNLTRGLYRQA-HENSSS--------------------- 459 (497)
Q Consensus 408 ~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~-~~~~~~l~~~~~d~~-~iw~~~--------------------- 459 (497)
|+.+++.. .. +.+|..++.+++++| ++. + +++++.|+. ++|...
T Consensus 240 d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~~-----l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~ 311 (357)
T 3i2n_A 240 DMRTQHPT-KGFASVSEKAHKSTVWQVRHLP--QNREL-----FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV 311 (357)
T ss_dssp EEEEEETT-TEEEEEEEECCSSCEEEEEEET--TEEEE-----EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred eCcCCCcc-cceeeeccCCCcCCEEEEEECC--CCCcE-----EEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence 99876544 33 349999999999999 444 5 899999999 999322
Q ss_pred CCcccccccCCCeEEEEEecCCCEEE-EEe-CCceEEEe
Q 010933 460 GHHELSYNLSSKLLHLAWHPTTNLIA-CAN-GNSLFFHY 496 (497)
Q Consensus 460 ~~~~~~~~~~~~i~~l~~~p~~~~la-~~~-~~~~~i~~ 496 (497)
........|...|++++|+|++++|+ +++ ++.+++|+
T Consensus 312 ~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 312 SLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 12334567899999999999999998 677 55699996
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-34 Score=295.08 Aligned_cols=257 Identities=15% Similarity=0.204 Sum_probs=204.6
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+|+|++||+|+.||.|+|||+.++. ......+.+|.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------------~~~~~~l~~h~------------ 53 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE------------ 53 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------EEEEEEECCCS------------
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------CccceeccCCc------------
Confidence 599999999999999999999999999999998542 24567788998
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|++++|+|..++.+|++++.||.|++||+.+++..
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~------------------------------------------- 90 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS------------------------------------------- 90 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE-------------------------------------------
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc-------------------------------------------
Confidence 8999999954334899999999999999999876521
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
.+..+ .+|...|.+++|+|+ ++.+++| .||.|++||++........ .+.+|...|
T Consensus 91 ---------------~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------~~~~~~~~v 148 (753)
T 3jro_A 91 ---------------QIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDAHAIGV 148 (753)
T ss_dssp ---------------EEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE------EEECCSSCE
T ss_pred ---------------ccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee------EeecCCCce
Confidence 11222 689999999999999 9999999 9999999999844222211 256799999
Q ss_pred EEEEEeC-------------CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee
Q 010933 267 TSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 333 (497)
Q Consensus 267 ~~~~~~~-------------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 333 (497)
.+++|+| ++ .+|++++.||.|++||++++......... +.+|...|.+++|+|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------------~~~h~~~V~~l~~sp 214 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLEST-------------LEGHSDWVRDVAWSP 214 (753)
T ss_dssp EEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEE-------------ECCCSSCEEEEEECC
T ss_pred EEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeee-------------ecCCCCcEEEEEecc
Confidence 9999999 47 89999999999999999886432111122 345678999999999
Q ss_pred C---CCEEEEEe-cCeEEEEecCCCCc----eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933 334 D---GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 405 (497)
Q Consensus 334 ~---g~~l~~~~-~~~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 405 (497)
+ +++|++++ ||.|++||+..... .......|...+ ++++|+|++++|++|+.||.|+
T Consensus 215 ~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~l~~spdg~~l~s~s~Dg~I~ 279 (753)
T 3jro_A 215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGGDNKVT 279 (753)
T ss_dssp CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC---------------CCEEECTTTCCEEEECSSSCEE
T ss_pred CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce---------------EEEEEcCCCCEEEEEcCCCEEE
Confidence 9 89999986 59999999986321 222223344332 6899999999999999999999
Q ss_pred EEEcCCCC
Q 010933 406 IFSHGVGS 413 (497)
Q Consensus 406 vw~~~~~~ 413 (497)
+|++..+.
T Consensus 280 vwd~~~~~ 287 (753)
T 3jro_A 280 LWKENLEG 287 (753)
T ss_dssp CCBCCSSS
T ss_pred EEecCCCC
Confidence 99998653
No 87
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.5e-33 Score=258.75 Aligned_cols=242 Identities=13% Similarity=0.090 Sum_probs=192.5
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|++++| ++++++|++++.|++|++||+.++...
T Consensus 14 ~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~------------------------------------------- 48 (316)
T 3bg1_A 14 DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQI------------------------------------------- 48 (316)
T ss_dssp CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEE-------------------------------------------
T ss_pred CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcE-------------------------------------------
Confidence 89999999 688999999999999999999765421
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCc-eeeEEeecCCCccCCCCCC
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (497)
++..+ .+|...|++++|++ +++.|++| .|++|++||++... ..... +.+|...
T Consensus 49 ---------------~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-------~~~h~~~ 105 (316)
T 3bg1_A 49 ---------------LIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE-------HAGHDSS 105 (316)
T ss_dssp ---------------EEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE-------ECCCSSC
T ss_pred ---------------EEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE-------ccCCCCc
Confidence 12222 79999999999986 48899999 99999999998432 22222 6789999
Q ss_pred eEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC---------
Q 010933 266 ITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------- 334 (497)
Q Consensus 266 i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------- 334 (497)
|.+++|+|+ + .+|++++.|+.|++||++.+... ... ..+.+|...+.+++|+|+
T Consensus 106 V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~----~~~----------~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 106 VNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW----EVK----------KINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp CCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE----EEC----------CBTTSSSSCBCCCEECCCCCC------
T ss_pred eEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc----cee----------eeeccccCCcceEEEccccCCcccccc
Confidence 999999998 6 89999999999999999875321 000 112346678999999997
Q ss_pred --------CCEEEEEe-cCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCC----CEEEEEe
Q 010933 335 --------GQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG----LHFATGS 399 (497)
Q Consensus 335 --------g~~l~~~~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~s~~ 399 (497)
+++|++|+ |+.|++||++..+ +++..+.+|...+ ++++|+|++ ++|++|+
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---------------~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---------------RDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---------------EEEECCCCSSCSCCEEEEEE
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---------------EEEEecCCCCCCCceEEEEc
Confidence 46888875 5999999997422 4667788888765 799999986 8999999
Q ss_pred CCCcEEEEEcCCC---CcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 400 YSNLLRIFSHGVG---SAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 400 ~dg~i~vw~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.|++|++|++.+. ......+..|...|++++|+| ++.. |++++.|+. ++|
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~g~~-----las~~~D~~v~lw 289 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI--TANI-----LAVSGGDNKVTLW 289 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT--TTCC-----EEEEESSSCEEEE
T ss_pred CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC--CCCE-----EEEEcCCCeEEEE
Confidence 9999999999863 222345678888999999998 5666 899999998 999
No 88
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.5e-32 Score=265.74 Aligned_cols=297 Identities=14% Similarity=0.192 Sum_probs=225.1
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++|+|++ +|++|+.||.|++||+.+++ .+..+.+|.
T Consensus 160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-----------------------~~~~~~~h~------------ 203 (464)
T 3v7d_B 160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-----------------------CTHVFEGHN------------ 203 (464)
T ss_dssp CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------
T ss_pred CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-----------------------EEEEECCCC------------
Confidence 599999999999988 99999999999999998764 367788898
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++|++.+++.++++++.|+.|++||+.++............
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~---------------------------------- 249 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY---------------------------------- 249 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS----------------------------------
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc----------------------------------
Confidence 8999999987788899999999999999999876533221111000
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
....... ......+..+ .+|...+.++ +++++.+++| .|+.|++||++ .++.... +.+|...|.+
T Consensus 250 -~~~~~~~--~~~~~~~~~~-~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~-------~~~~~~~v~~ 315 (464)
T 3v7d_B 250 -PLVFHTP--EENPYFVGVL-RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA-QMKCLYI-------LSGHTDRIYS 315 (464)
T ss_dssp -SEEESCG--GGCTTEEEEE-CCCSSCEEEE--EEETTEEEEEETTSCEEEEETT-TTEEEEE-------ECCCSSCEEE
T ss_pred -ceEeecc--CCCeEEEEEc-cCccceEEEE--cCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------ecCCCCCEEE
Confidence 0000000 0001122233 7888888877 5778899999 99999999998 5555554 6789999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+|++ .+|++++.||.|++||+++++.. ..+. +|...+.++.|+ +++|++++ ||.|+
T Consensus 316 ~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~----~~~~-------------~h~~~v~~~~~~--~~~l~s~s~dg~v~ 375 (464)
T 3v7d_B 316 TIYDHER-KRCISASMDTTIRIWDLENGELM----YTLQ-------------GHTALVGLLRLS--DKFLVSAAADGSIR 375 (464)
T ss_dssp EEEETTT-TEEEEEETTSCEEEEETTTTEEE----EEEC-------------CCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred EEEcCCC-CEEEEEeCCCcEEEEECCCCcEE----EEEe-------------CCCCcEEEEEEc--CCEEEEEeCCCcEE
Confidence 9999999 99999999999999999987654 3333 356789999997 57888875 59999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+||+.+ ........ +...+ ..++|+|++++|++|+ ||.|++||+.+++.+...+..|..+|.
T Consensus 376 vwd~~~-~~~~~~~~-~~~~~---------------~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~ 437 (464)
T 3v7d_B 376 GWDAND-YSRKFSYH-HTNLS---------------AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIW 437 (464)
T ss_dssp EEETTT-CCEEEEEE-CTTCC---------------CEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEE
T ss_pred EEECCC-Cceeeeec-CCCCc---------------cEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEE
Confidence 999986 55444443 22221 4789999999999999 899999999998766555788999999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eec
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+++|+. ... +++++.++. .+|
T Consensus 438 ~v~~~~---~~l-----~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 438 SVNFKG---KTL-----VAAVEKDGQSFLE 459 (464)
T ss_dssp EEEEET---TEE-----EEEEEETTEEEEE
T ss_pred EEEecC---CEE-----EEEEEeCCeEEEE
Confidence 999963 222 566666666 444
No 89
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.4e-32 Score=265.56 Aligned_cols=248 Identities=19% Similarity=0.290 Sum_probs=205.2
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|+||+|+|+|++||+|+.||.|+|||+.+++ .+..+.+|.
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----------------------~~~~~~~h~------------ 189 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS------------ 189 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----------------------EEEEEeCCC------------
Confidence 577899999999999999999999999999998874 377788999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.++.| ++..|++++.|+.+++||......
T Consensus 190 ~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~-------------------------------------------- 221 (420)
T 4gga_A 190 ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEH-------------------------------------------- 221 (420)
T ss_dssp SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSC--------------------------------------------
T ss_pred CceEEEee----CCCEEEEEeCCCceeEeeecccce--------------------------------------------
Confidence 88999888 356999999999999999875431
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.+..+ .+|...+..+.++|+++.++++ .|+.+++|+.......... ......|...|.+
T Consensus 222 ---------------~~~~~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~~~~~~V~~ 281 (420)
T 4gga_A 222 ---------------HVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAVKA 281 (420)
T ss_dssp ---------------EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEECCCSSCEEE
T ss_pred ---------------eeEEe-cccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeecccCCceee
Confidence 12222 6899999999999999999999 9999999999843321110 0125678999999
Q ss_pred EEEeCCCCcEEEEE--eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe---c
Q 010933 269 AEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y 343 (497)
Q Consensus 269 ~~~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~ 343 (497)
++|+|.+..+++++ +.|+.|++||+++++.. ..+.. ...+.++.|+|+++.+++++ |
T Consensus 282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~--------------~~~v~~~~~~~~~~~lv~~sg~~d 343 (420)
T 4gga_A 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDA--------------HSQVCSILWSPHYKELISGHGFAQ 343 (420)
T ss_dssp EEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEEETTTTEEEEEECTTT
T ss_pred eeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeecc--------------ccceeeeeecCCCCeEEEEEecCC
Confidence 99999886777765 47999999999998654 33333 25689999999999988763 5
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
+.|+|||+.+ ++++.++.+|...| ++++|+|||++|+||+.|++|+|||+.+...
T Consensus 344 ~~I~iwd~~~-~~~v~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 344 NQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 9999999987 89999999998865 7999999999999999999999999987543
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.6e-32 Score=266.32 Aligned_cols=270 Identities=12% Similarity=0.204 Sum_probs=221.2
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|...|+|++| +|++|++|+.||.|++||..+++. ...+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-----------------------~~~~~~h~------------ 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-----------------------KRILTGHT------------ 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-----------------------EEEECCCS------------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-----------------------EEEEcCCC------------
Confidence 46678999887 789999999999999999987643 67788998
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|.+++| ++.+|++|+.||.|++||+.+++..
T Consensus 174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~------------------------------------------- 206 (435)
T 1p22_A 174 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEML------------------------------------------- 206 (435)
T ss_dssp SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEE-------------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEE-------------------------------------------
Confidence 88999998 5679999999999999999876632
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
..+ .+|...|.+++|++ ..+++| .|+.|++||++........ ..+.+|...|.+
T Consensus 207 -----------------~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~v~~ 261 (435)
T 1p22_A 207 -----------------NTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR-----RVLVGHRAAVNV 261 (435)
T ss_dssp -----------------EEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-----EEECCCSSCEEE
T ss_pred -----------------EEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-----eEecCCCCcEEE
Confidence 222 68899999999974 588888 9999999999844322110 126789999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++| ++ .+|++++.||.|++||+++++.. ..+. +|...+.++.++ ++++++|+ |+.|+
T Consensus 262 ~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~----~~~~-------------~~~~~v~~~~~~--~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 262 VDF--DD-KYIVSASGDRTIKVWNTSTCEFV----RTLN-------------GHKRGIACLQYR--DRLVVSGSSDNTIR 319 (435)
T ss_dssp EEE--ET-TEEEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred EEe--CC-CEEEEEeCCCeEEEEECCcCcEE----EEEc-------------CCCCcEEEEEeC--CCEEEEEeCCCeEE
Confidence 999 55 78999999999999999987654 3333 355788888884 67888875 59999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc--------ceEEE
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------GGITV 419 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~--------~~~~~ 419 (497)
+||+++ ++++..+.+|...+ .+++| ++++|++|+.||.|++||+.++.. ....+
T Consensus 320 iwd~~~-~~~~~~~~~h~~~v---------------~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 381 (435)
T 1p22_A 320 LWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 381 (435)
T ss_dssp EEETTT-CCEEEEECCCSSCE---------------EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred EEECCC-CCEEEEEeCCcCcE---------------EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec
Confidence 999997 88999999888764 57777 789999999999999999976541 45788
Q ss_pred eccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 420 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 420 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
.+|.++|.++++ ++.. +++|+.||. ++|.
T Consensus 382 ~~h~~~v~~l~~----~~~~-----l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 382 VEHSGRVFRLQF----DEFQ-----IVSSSHDDTILIWD 411 (435)
T ss_dssp CCCSSCCCCEEE----CSSC-----EEECCSSSEEEEEC
T ss_pred cCCCCCeEEEEe----CCCE-----EEEEeCCCEEEEEE
Confidence 999999999999 3444 899999999 9994
No 91
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=274.93 Aligned_cols=297 Identities=10% Similarity=0.044 Sum_probs=205.2
Q ss_pred cCCcceEEEEEcCC------CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccc
Q 010933 30 QDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 103 (497)
Q Consensus 30 ~h~~~I~~i~~sp~------g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 103 (497)
.|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+++.... .. ........++.+|.
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~-~~-----------~~~~~p~~~l~~h~------ 266 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH-VF-----------KMCEKPSLTLSLAD------ 266 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS-EE-----------ECCCSCSEEECCTT------
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc-cc-----------eeecCceEEEEcCC------
Confidence 46789999999997 57999999999999999987532000 00 00001234577888
Q ss_pred cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
..|++++|+ ++ ..|++|+.||+|++||+.++..
T Consensus 267 ------~~v~sv~~s--~~-~~lasgs~DgtV~lWD~~~~~~-------------------------------------- 299 (524)
T 2j04_B 267 ------SLITTFDFL--SP-TTVVCGFKNGFVAEFDLTDPEV-------------------------------------- 299 (524)
T ss_dssp ------TCEEEEEES--SS-SEEEEEETTSEEEEEETTBCSS--------------------------------------
T ss_pred ------CCEEEEEec--CC-CeEEEEeCCCEEEEEECCCCCC--------------------------------------
Confidence 889999994 44 4899999999999999986531
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEE--EeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCcc
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSI--SNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 259 (497)
+... +.+|...|.++ .|+|++ .+|++| .|++|++||++ ..+.... +
T Consensus 300 ---------------------~~~~-~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~-~~~~~~~-------~ 349 (524)
T 2j04_B 300 ---------------------PSFY-DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK-DIATTKT-------T 349 (524)
T ss_dssp ---------------------CSEE-EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG-GHHHHCE-------E
T ss_pred ---------------------ceEE-eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC-CCCcccc-------c
Confidence 1111 26899999999 578887 889999 99999999998 4443332 3
Q ss_pred CCCC--CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933 260 DDLT--EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 337 (497)
Q Consensus 260 ~~~~--~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 337 (497)
.+|. ..|.+++|+|++ ..|++++.|+.|++||++++... ..+ .+|.+.|++++|+|+|++
T Consensus 350 ~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~----~~l-------------~gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 350 VSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAV----HPL-------------VSRETTITAIGVSRLHPM 411 (524)
T ss_dssp EEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCC----EEE-------------EECSSCEEEEECCSSCCB
T ss_pred ccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccc----eee-------------ecCCCceEEEEeCCCCCe
Confidence 3443 357899999999 88999999999999999987543 233 346789999999999999
Q ss_pred EEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce
Q 010933 338 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 416 (497)
Q Consensus 338 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~ 416 (497)
|++|+ |+.|++||+.. +.+...+.+.... ....+++++|+|+++.+ ....+ ..+|+........
T Consensus 412 l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~-~~~~~--~~~~~~~~~g~~~ 476 (524)
T 2j04_B 412 VLAGSADGSLIITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKY-RIDSS--YEVYPLTVNDVSK 476 (524)
T ss_dssp CEEEETTTEEECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEE-EECCC--CCCCC--------
T ss_pred EEEEECCCEEEEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeE-EccCC--ceecccccCCcce
Confidence 99986 59999999863 3333222111100 00012589999999855 23222 3344433112345
Q ss_pred EEEeccCcceeeeEeecCCC-cccccccceeEeeccCc-eecCCC
Q 010933 417 ITVEAGKNENRKPILQAAPR-ARRSSLSNLTRGLYRQA-HENSSS 459 (497)
Q Consensus 417 ~~~~~~~~~v~~~~~~~~~~-~~~~~~~~l~~~~~d~~-~iw~~~ 459 (497)
..+.+|..+|++++|+|..+ +.. +|+|+.+|. ++|...
T Consensus 477 ~~l~gh~~~V~~Vafsp~~~~~~~-----lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 477 AKIDAHGINITCTKWNETSAGGKC-----YAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTE-----EEEECTTSEEEEEECS
T ss_pred eeecCCCceEEEEECCCCCCccHH-----HHhhccCceEEEEEcc
Confidence 78999999999999999533 345 999999999 999433
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.5e-32 Score=259.36 Aligned_cols=286 Identities=14% Similarity=0.120 Sum_probs=217.0
Q ss_pred ceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 34 ~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
....++++|+...+ ++|+.||.|+||++..... ....+..+.+|. +.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-------------------~~~~~~~~~~h~------------~~V 84 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR-------------------VDKNVPLVCGHT------------APV 84 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE-------------------CCTTCCCBCCCS------------SCE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC-------------------CCCCCceEecCC------------CCE
Confidence 44568899987544 4578899999999865321 112355678898 899
Q ss_pred eEEEEEecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 113 NRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 113 ~~l~~~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
++++| +| ++.+|++++.|+.|++|++.++......
T Consensus 85 ~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~------------------------------------------ 120 (402)
T 2aq5_A 85 LDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPL------------------------------------------ 120 (402)
T ss_dssp EEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCB------------------------------------------
T ss_pred EEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCcccc------------------------------------------
Confidence 99999 57 8899999999999999999876532110
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCcc--CCCCCCeE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVIT 267 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~ 267 (497)
.+++..+ .+|...|.+++|+|++ +.|++| .|+.|++||++ .++.... + ..|...|.
T Consensus 121 -----------~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~-------~~~~~~~~~v~ 180 (402)
T 2aq5_A 121 -----------REPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-TGAAVLT-------LGPDVHPDTIY 180 (402)
T ss_dssp -----------CSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-TTEEEEE-------ECTTTCCSCEE
T ss_pred -----------CCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-CCCccEE-------EecCCCCCceE
Confidence 0123333 7899999999999998 688998 99999999999 5555544 4 67999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccccee-cccccccCCccccccccc-cccEEEEeeCCCEEEEE----
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL-RDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSR---- 341 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~---- 341 (497)
+++|+|++ .+|++++.|+.|++||+++++.. ..+ .. |.+ .+.++.|+|++++|++|
T Consensus 181 ~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~-------------~~~~~~~~~~~~~~~~~l~~g~~~~ 242 (402)
T 2aq5_A 181 SVDWSRDG-ALICTSCRDKRVRVIEPRKGTVV----AEKDRP-------------HEGTRPVHAVFVSEGKILTTGFSRM 242 (402)
T ss_dssp EEEECTTS-SCEEEEETTSEEEEEETTTTEEE----EEEECS-------------SCSSSCCEEEECSTTEEEEEEECTT
T ss_pred EEEECCCC-CEEEEEecCCcEEEEeCCCCcee----eeeccC-------------CCCCcceEEEEcCCCcEEEEeccCC
Confidence 99999999 99999999999999999987654 333 22 233 38999999999999998
Q ss_pred ecCeEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcceEEE
Q 010933 342 DYMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAGGITV 419 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~ 419 (497)
.++.|++||++....++.... .+...+ ..++|+|++++|+ +|+.||.|++||+.+++.....+
T Consensus 243 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 243 SERQVALWDTKHLEEPLSLQELDTSSGV---------------LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL 307 (402)
T ss_dssp CCEEEEEEETTBCSSCSEEEECCCCSSC---------------EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred CCceEEEEcCccccCCceEEeccCCCce---------------eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEee
Confidence 459999999986333343333 222222 6899999999997 55579999999999886534555
Q ss_pred ecc--CcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 420 EAG--KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 420 ~~~--~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
..| ..++.+++|+| ++.. ++++ ++. ++|
T Consensus 308 ~~~~~~~~v~~~~~sp--~~~~-----~~s~--~~~~~~~ 338 (402)
T 2aq5_A 308 SMFSSKESQRGMGYMP--KRGL-----EVNK--CEIARFY 338 (402)
T ss_dssp EEECCSSCCSEEEECC--GGGS-----CGGG--TEEEEEE
T ss_pred cccccCCcccceEEec--cccc-----ceec--ceeEEEE
Confidence 554 59999999998 5554 4443 334 777
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.9e-32 Score=261.29 Aligned_cols=312 Identities=16% Similarity=0.233 Sum_probs=219.6
Q ss_pred cccccccCcccccccccccccceeEEEEEecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 168 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
...+.+|. +.|++++| +| ++.+|++++.||.|++|++.++..........
T Consensus 36 ~~~~~~h~------------~~v~~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------------- 86 (408)
T 4a11_B 36 RDVERIHG------------GGINTLDI--EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA--------------- 86 (408)
T ss_dssp EEECCCCS------------SCEEEEEE--CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---------------
T ss_pred eeeeeccC------------CcEEEEEE--ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---------------
Confidence 55677888 99999999 67 89999999999999999998766433211000
Q ss_pred ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCc
Q 010933 169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD 246 (497)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~ 246 (497)
.... ......+|...|.+++|+| +++.|+++ .|+.|++||+. .+
T Consensus 87 -------------------------~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~ 132 (408)
T 4a11_B 87 -------------------------VCSI--------GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN-TL 132 (408)
T ss_dssp -------------------------EEEE--------CTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT-TT
T ss_pred -------------------------cccc--------cccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC-CC
Confidence 0000 0000146899999999999 77899998 99999999999 55
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCCCC--cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 324 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (497)
+....+ .+...+.++.++|.+. .++++++.|+.|++||+++++.. ..+. .|..
T Consensus 133 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~~~-------------~~~~ 187 (408)
T 4a11_B 133 QTADVF--------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----HILQ-------------GHRQ 187 (408)
T ss_dssp EEEEEE--------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC----EEEC-------------CCCS
T ss_pred ccceec--------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee----eeec-------------CCCC
Confidence 555442 3677899999998641 49999999999999999987644 3333 3567
Q ss_pred cccEEEEeeCCCE-EEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 325 SISDIKFANDGQH-LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 325 ~i~~~~~s~~g~~-l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
.|.+++|+|++++ +++++ ++.|++||++....++..+..+..................+++++|+|++++|++++.||
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 267 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267 (408)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence 8999999999984 77775 599999999874445555533322110000000001111237999999999999999999
Q ss_pred cEEEEEcCCCCcceEEEeccC--c--ceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEE
Q 010933 403 LLRIFSHGVGSAGGITVEAGK--N--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHL 475 (497)
Q Consensus 403 ~i~vw~~~~~~~~~~~~~~~~--~--~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l 475 (497)
.|++||+.+++.. ..+..+. . .......... ... .++.++.++. .+| ..++......+|...|+++
T Consensus 268 ~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~ 340 (408)
T 4a11_B 268 RMRLWNSSNGENT-LVNYGKVCNNSKKGLKFTVSCG-CSS-----EFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC 340 (408)
T ss_dssp CEEEEETTTCCBC-CCCCCCCCCCCSSCCCCEECCS-SSS-----CEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred eEEEEECCCCccc-eeccccccccccccceeEEecC-CCc-----eEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE
Confidence 9999999987553 2222111 1 1111222221 122 2677777888 999 4455566677899999999
Q ss_pred EEecCCCEEEEEeCC-ceEEEe
Q 010933 476 AWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 476 ~~~p~~~~la~~~~~-~~~i~~ 496 (497)
+|+|++++|++++.| .+++|+
T Consensus 341 ~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 341 VFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EEETTTTEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEECCCCeEEEEe
Confidence 999999999999954 599996
No 94
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.3e-31 Score=251.61 Aligned_cols=299 Identities=16% Similarity=0.129 Sum_probs=204.6
Q ss_pred ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933 91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 170 (497)
Q Consensus 91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (497)
..+.+|. +.|++++| +|++.+|++++.||.|++|++.++....
T Consensus 5 ~~~~gH~------------~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~----------------------- 47 (351)
T 3f3f_A 5 PFDSGHD------------DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSNW----------------------- 47 (351)
T ss_dssp CEECCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCCE-----------------------
T ss_pred ccCcccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCcc-----------------------
Confidence 3467888 89999999 6899999999999999999998654211
Q ss_pred ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCc-
Q 010933 171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD- 246 (497)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~- 246 (497)
+....+ .+|...|.+++|+| +++.|++| .|+.|++||++...
T Consensus 48 ---------------------------------~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 48 ---------------------------------ELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp ---------------------------------EEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred ---------------------------------eeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence 122233 68999999999999 69999999 99999999998432
Q ss_pred -------eeeEEeecCCCccCCCCCCeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcc
Q 010933 247 -------QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 317 (497)
Q Consensus 247 -------~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (497)
+.... +..|...|.+++|+|+ + .+|++++.||.|++||+++++... .+...........
T Consensus 94 ~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 94 ECSGRRWNKLCT-------LNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLR----SWTLTSEMKVLSI 161 (351)
T ss_dssp TTSSCSEEEEEE-------ECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTT----CCEEEEEEESCSC
T ss_pred cccccCcceeee-------ecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhc----ccccccccccccc
Confidence 22332 6689999999999999 8 999999999999999999876542 2221111111111
Q ss_pred ccccccccccEEEEeeC---CCEEEEEec-CeEEEEecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933 318 FFTEIIASISDIKFAND---GQHLLSRDY-MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 391 (497)
Q Consensus 318 ~~~~~~~~i~~~~~s~~---g~~l~~~~~-~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 391 (497)
....|...+.+++|+|+ +.++++++. +.+.+|+... ++. +..+.+|...+ ++++|+|+
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i---------------~~~~~~p~ 225 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLI---------------RSISWAPS 225 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCE---------------EEEEECCC
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcce---------------eEEEECCC
Confidence 12356788999999997 889998865 7777777654 543 66677777654 79999999
Q ss_pred C----CEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-----eecC--CCC
Q 010933 392 G----LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-----HENS--SSG 460 (497)
Q Consensus 392 ~----~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-----~iw~--~~~ 460 (497)
+ ++|++|+.||.|++||+.++... .....+..........+ .... ++.+..++. .+|. ...
T Consensus 226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 226 IGRWYQLIATGCKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSA--DVDM-----DAQGRSDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp SSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------------CCSEEEE
T ss_pred CCCcceEEEEEcCCCeEEEEeCCCCcCc-cccCCcccceeccCCCc--cccc-----ccccccccccceeeeeccccccc
Confidence 8 89999999999999999876433 22222222222222222 1111 222322222 3331 112
Q ss_pred CcccccccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933 461 HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 496 (497)
Q Consensus 461 ~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~ 496 (497)
......+|...|++++|+|++++||+++.|+ +++|.
T Consensus 298 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 3444567899999999999999999999554 99996
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.4e-32 Score=258.15 Aligned_cols=290 Identities=9% Similarity=0.068 Sum_probs=210.3
Q ss_pred cceeEEEEEecCCCCEEEEEeCCc-------cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDK-------TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
-+|++++| +||+++|++|+.|. .|++|++..+.........
T Consensus 15 ~PV~sv~f--s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~------------------------------ 62 (365)
T 4h5i_A 15 YPAYGAKF--LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH------------------------------ 62 (365)
T ss_dssp SCEEEEEE--EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE------------------------------
T ss_pred CCEEEEEE--eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee------------------------------
Confidence 67999999 57899999987543 5999998765422110000
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE------------cCCeEEEEeCccCceeeE
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA------------DDLRINLWNLEISDQCFN 250 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~------------~d~~i~iwd~~~~~~~~~ 250 (497)
......+.+|...+.+++++ ++.+++| .|+.+++|++........
T Consensus 63 ---------------------~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~ 119 (365)
T 4h5i_A 63 ---------------------ILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE 119 (365)
T ss_dssp ---------------------EEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred ---------------------eeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence 00001126777888877664 4455553 467899999875443333
Q ss_pred Eeec-CCCccCCCCCCeEEEEEeCCCCcEEEEEe--CCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933 251 IVDM-KPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 327 (497)
Q Consensus 251 ~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 327 (497)
.+.. .......++..+..++|+|+| +++++++ .|+.|++||+++++.. ..+. |...|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~~~----~~~~--------------~~~~V~ 180 (365)
T 4h5i_A 120 FLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDLTEK----FEIE--------------TRGEVK 180 (365)
T ss_dssp EEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTTEEE----EEEE--------------CSSCCC
T ss_pred EeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCcEE----EEeC--------------CCCceE
Confidence 2211 112234456779999999999 8776554 6899999999987654 2222 346799
Q ss_pred EEEEeeCCCEEEEEecCeEEEEecCCCCceeee--eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC---
Q 010933 328 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--- 402 (497)
Q Consensus 328 ~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--- 402 (497)
+++|+|+|+++++++++.+++|+..+ ++.+.. ...|...+ .+++|+|+++++++++.|+
T Consensus 181 ~v~fspdg~~l~s~s~~~~~~~~~~~-~~~~~~~~~~~~~~~v---------------~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 181 DLHFSTDGKVVAYITGSSLEVISTVT-GSCIARKTDFDKNWSL---------------SKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp EEEECTTSSEEEEECSSCEEEEETTT-CCEEEEECCCCTTEEE---------------EEEEEEETTEEEEEEEESSSCC
T ss_pred EEEEccCCceEEeccceeEEEEEecc-CcceeeeecCCCCCCE---------------EEEEEcCCCCEEEEEecCCcce
Confidence 99999999999999887888888776 444432 33444433 6899999999999999887
Q ss_pred -cEEEEEcCCCCcc---eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC--CCCCccc-ccccCCCeEE
Q 010933 403 -LLRIFSHGVGSAG---GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHEL-SYNLSSKLLH 474 (497)
Q Consensus 403 -~i~vw~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~--~~~~~~~-~~~~~~~i~~ 474 (497)
.+++|++...... ...+.+|..+|++++|+| ++++ ||+|+.|+. ++|. .++.... ..+|...|++
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp--dg~~-----lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~ 317 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM--KGEL-----AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE 317 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT--TSCE-----EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECC--CCCc-----eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence 6888998765432 356788999999999999 7777 999999999 9993 3344444 4679999999
Q ss_pred EEEecCCCEEEEEe-CCceEEEe
Q 010933 475 LAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 475 l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
|+|+|||++||+|+ ++.++||.
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999 45599996
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-31 Score=251.29 Aligned_cols=268 Identities=9% Similarity=0.040 Sum_probs=213.1
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|++++| +|++.+|++++.|+.|++|++.++....
T Consensus 12 ~~v~~~~~--s~~~~~l~~~~~d~~v~iw~~~~~~~~~------------------------------------------ 47 (342)
T 1yfq_A 12 DYISDIKI--IPSKSLLLITSWDGSLTVYKFDIQAKNV------------------------------------------ 47 (342)
T ss_dssp SCEEEEEE--EGGGTEEEEEETTSEEEEEEEETTTTEE------------------------------------------
T ss_pred CcEEEEEE--cCCCCEEEEEcCCCeEEEEEeCCCCccc------------------------------------------
Confidence 89999999 5788999999999999999998655110
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeC-ccCceeeEEeecCCCccCC--CCC
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNL-EISDQCFNIVDMKPSNMDD--LTE 264 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~--~~~ 264 (497)
..... .+|...|.+++|+|+++ .|++| .|+.|++||+ . .++... +.+ |..
T Consensus 48 ---------------~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~--------~~~~~~~~ 102 (342)
T 1yfq_A 48 ---------------DLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG-SPSFQA--------LTNNEANL 102 (342)
T ss_dssp ---------------EEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS-SSSEEE--------CBSCCCCS
T ss_pred ---------------cceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc-CCceEe--------ccccCCCC
Confidence 11112 47889999999999999 99999 9999999999 7 443322 567 999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccC---------CcccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ---------SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 335 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 335 (497)
.|.+++|+| + .+|++++.|+.|++||+++ ++.. ..+. |...+.+++|+|++
T Consensus 103 ~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~--------------~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 103 GICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNTK--------------VKNKIFTMDTNSSR 162 (342)
T ss_dssp CEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS----SSSS--------------SCCCEEEEEECSSE
T ss_pred ceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCee----eEEe--------------eCCceEEEEecCCc
Confidence 999999999 7 9999999999999999986 4322 1111 45789999999988
Q ss_pred CEEEEE-ecCeEEEEecCC-CCceee-eeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 010933 336 QHLLSR-DYMNLKLWDIRM-DSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 336 ~~l~~~-~~~~i~lwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~ 411 (497)
++++ .++.|++||++. ...... ....+... +.+++|+| ++++|++++.||.|++|+++.
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------------i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ---------------IRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC---------------EEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCc---------------eeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 5555 569999999985 333222 22233332 26899999 999999999999999999988
Q ss_pred C-----CcceEEEeccCc---------ceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCccccccc-CCCeE
Q 010933 412 G-----SAGGITVEAGKN---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNL-SSKLL 473 (497)
Q Consensus 412 ~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~-~~~i~ 473 (497)
. ......+..|.. ++.+++++| ++.+ |++++.|+. ++| ..++.......| ..+|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 298 (342)
T 1yfq_A 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP--RHKF-----LYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV 298 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT--TTCC-----EEEEETTSCEEEEETTTTEEEEECCCCSSSEEE
T ss_pred CCcccccccceeeecccccccccccceeEEEEEEcC--CCCE-----EEEecCCceEEEEcCccHhHhhhhhcccCCCce
Confidence 7 355688888866 999999998 6666 999999999 999 334455566777 99999
Q ss_pred EEEEecCCCEEEEEeCCce
Q 010933 474 HLAWHPTTNLIACANGNSL 492 (497)
Q Consensus 474 ~l~~~p~~~~la~~~~~~~ 492 (497)
+++ |++++||+++.|+.
T Consensus 299 ~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 299 KIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EEE--ECSSEEEEEEECTH
T ss_pred Eec--CCCCeEEEEecCCc
Confidence 999 99999999996653
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=267.78 Aligned_cols=302 Identities=13% Similarity=0.195 Sum_probs=224.0
Q ss_pred EEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccc-cccCcccccccccccccceeEEEE
Q 010933 39 EFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKSLEIEEKINRVRW 117 (497)
Q Consensus 39 ~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~i~~l~~ 117 (497)
.|+|+++.+++++ .|+.+. +.+..+ .+|. +.|++++|
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g------------------------~~~~~~~~~h~------------~~V~~~~~ 71 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG------------------------KLIATLMENEP------------NSITSSAV 71 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC------------------------CEEEEECTTTT------------SCEEEEEE
T ss_pred hcCCccccccccc------cccccc------------------------eEEeeeccCCC------------CceEEEEE
Confidence 4789998888765 376433 346667 8898 89999999
Q ss_pred EecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEe
Q 010933 118 CAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN 196 (497)
Q Consensus 118 ~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (497)
+| ++.+|++++.|++|++||+.+......
T Consensus 72 --s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------------------------------------------------ 101 (437)
T 3gre_A 72 --SPGETPYLITGSDQGVIKIWNLKEIIVGEV------------------------------------------------ 101 (437)
T ss_dssp --ECSSSCEEEEEETTSEEEEEEHHHHHTTCC------------------------------------------------
T ss_pred --CCCCCCEEEEecCCceEEEeECcccccCcc------------------------------------------------
Confidence 57 889999999999999999976331100
Q ss_pred ecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc--cCceeeEEeecC---CCccCC--CCCCeEE
Q 010933 197 VGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE--ISDQCFNIVDMK---PSNMDD--LTEVITS 268 (497)
Q Consensus 197 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~--~~~~~~~~~~~~---~~~~~~--~~~~i~~ 268 (497)
.++... ..|...|.+++|+|+++.|++| .|+.|++||++ ..++........ ...+.. +...+.+
T Consensus 102 ------~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 173 (437)
T 3gre_A 102 ------YSSSLT--YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVR 173 (437)
T ss_dssp ------CSCSEE--EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEE
T ss_pred ------cceeee--ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceE
Confidence 001121 2689999999999999999999 99999999995 122222211100 001222 5677777
Q ss_pred EE--EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933 269 AE--FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 345 (497)
Q Consensus 269 ~~--~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~ 345 (497)
+. +++++ .+|++++.|+.|++||+++++.. ..+.. ..|...|++++|+|++++|++|+ |+.
T Consensus 174 ~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~-----------~~h~~~v~~~~~s~~~~~l~s~~~dg~ 237 (437)
T 3gre_A 174 MRAFVNEEK-SLLVALTNLSRVIIFDIRTLERL----QIIEN-----------SPRHGAVSSICIDEECCVLILGTTRGI 237 (437)
T ss_dssp EEEEECSSC-EEEEEEETTSEEEEEETTTCCEE----EEEEC-----------CGGGCCEEEEEECTTSCEEEEEETTSC
T ss_pred EEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeee----EEEcc-----------CCCCCceEEEEECCCCCEEEEEcCCCe
Confidence 77 56888 99999999999999999987654 33333 12567899999999999999986 499
Q ss_pred EEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEEEEc----CCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933 346 LKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVS----GDGLHFATGSYSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 420 (497)
|++||++. ++++..+. .|...+ ++++|+ |++++|++|+.||.|++||+.+++. ...+.
T Consensus 238 i~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~ 300 (437)
T 3gre_A 238 IDIWDIRF-NVLIRSWSFGDHAPI---------------THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC-QYAFI 300 (437)
T ss_dssp EEEEETTT-TEEEEEEBCTTCEEE---------------EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE-EEEEE
T ss_pred EEEEEcCC-ccEEEEEecCCCCce---------------EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE-EEEEE
Confidence 99999997 88888775 454433 678555 5688999999999999999998854 48889
Q ss_pred ccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccc--cCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYN--LSSKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~--~~~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
+|...+..+.+++. +.. + ......+ |...|++++|+ ++++|++|+ ++.+++|+
T Consensus 301 ~~~~~~~~~~~~~~--~~~-----l---------------~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 301 NSDEQPSMEHFLPI--EKG-----L---------------EELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS 356 (437)
T ss_dssp SSSSCCCGGGGSCB--CSS-----G---------------GGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred cCCCCCccceeccc--ccc-----c---------------ccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence 99998888888873 222 1 0111223 77789999999 788899988 66699997
No 98
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.3e-31 Score=255.99 Aligned_cols=261 Identities=14% Similarity=0.156 Sum_probs=170.3
Q ss_pred CCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCC
Q 010933 121 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 200 (497)
Q Consensus 121 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (497)
+++.++++++.|++|++||+..+......
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~--------------------------------------------------- 127 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQH--------------------------------------------------- 127 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEE---------------------------------------------------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceee---------------------------------------------------
Confidence 45668999999999999999877643211
Q ss_pred ccceeeeeeccCCCCCeeEEEeCC--------CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933 201 VHARCQKVYPHAHDFNINSISNNS--------DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 271 (497)
Q Consensus 201 ~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (497)
++.. +.+|...|++++|+| ++++|++| .|++|+|||++..+.... +..|...+.+++|
T Consensus 128 ----~~~~-~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------~~~~~~~v~~v~~ 194 (393)
T 4gq1_A 128 ----VLGG-KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------GYPLSSPGISVQF 194 (393)
T ss_dssp ----EECT-TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------EEECSSCEEEEEE
T ss_pred ----eecc-cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------ecCCCCCcEEEEE
Confidence 1111 379999999999997 78999999 999999999984444433 4578899999999
Q ss_pred eCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccc--------ccccCCccccccccccccEEEEe-eCCCEEEEEe
Q 010933 272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA--------AESHGSKSFFTEIIASISDIKFA-NDGQHLLSRD 342 (497)
Q Consensus 272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~ 342 (497)
+|++..+|++++.|+.|++||+++++...........+ ...........+|...+.++.|+ |+++.|++++
T Consensus 195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s 274 (393)
T 4gq1_A 195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC 274 (393)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe
Confidence 99874689999999999999999876542211111000 00011111235678899999997 7999999986
Q ss_pred -cCeEEEEecCCCCceeeeeeeccccccccccc------CCCCCccceeEEEEcC--CCCEEEEEeCCCcEEEEEcCCCC
Q 010933 343 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL------YNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 343 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~--~~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
|+.+++||+.. ++....+..|...+...... ...... ....|+| ++.++++|+.||.|++||+.+++
T Consensus 275 ~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 275 KSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSL---LGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp TTSEEEEEEC--------------------CCSCSEEEECSSCCS---SCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred CCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcc---eeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 49999999986 66666555554332111100 000011 1344544 45577788899999999998874
Q ss_pred cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceE
Q 010933 414 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLF 493 (497)
Q Consensus 414 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~ 493 (497)
.. .. ..+|..+|++|+|||||++||+++++++.
T Consensus 351 ~~-~~----------------------------------------------~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 351 SN-SI----------------------------------------------PIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CC-EE----------------------------------------------EEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EE-EE----------------------------------------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 43 11 12344588999999999999999999998
Q ss_pred EEe
Q 010933 494 FHY 496 (497)
Q Consensus 494 i~~ 496 (497)
+|.
T Consensus 384 lvr 386 (393)
T 4gq1_A 384 LTR 386 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 99
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-32 Score=258.26 Aligned_cols=210 Identities=11% Similarity=0.139 Sum_probs=161.1
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|.+.|++++|+|+|++||+|+.|+.|++||+.+++. +.....+.+|.
T Consensus 52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~--------------------~~~~~~~~~~~----------- 100 (377)
T 3dwl_C 52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT--------------------WKQTLVLLRLN----------- 100 (377)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C--------------------CCCEEECCCCS-----------
T ss_pred ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc--------------------eeeeeEecccC-----------
Confidence 35899999999999999999999999999999987641 13355677888
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++| +|++.+|++++.|+.|++||++.++...
T Consensus 101 -~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~----------------------------------------- 136 (377)
T 3dwl_C 101 -RAATFVRW--SPNEDKFAVGSGARVISVCYFEQENDWW----------------------------------------- 136 (377)
T ss_dssp -SCEEEEEC--CTTSSCCEEEESSSCEEECCC-----CC-----------------------------------------
T ss_pred -CceEEEEE--CCCCCEEEEEecCCeEEEEEECCcccce-----------------------------------------
Confidence 88999999 6889999999999999999998765211
Q ss_pred CcceEEEeecCCccceeeeeeccC-CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC-----------------ceee
Q 010933 189 NMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-----------------DQCF 249 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-----------------~~~~ 249 (497)
+.+.+ .. |...|.+++|+|+++.|+++ .|+.|++||++.. +...
T Consensus 137 ----------------~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (377)
T 3dwl_C 137 ----------------VSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC 199 (377)
T ss_dssp ----------------CCEEE-CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE
T ss_pred ----------------eeeEe-ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh
Confidence 11222 44 89999999999999999999 9999999998521 1122
Q ss_pred EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933 250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 329 (497)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 329 (497)
. .+ +|...|.+++|+|++ .+|++++.||.|++||+++++........+ .+|...+.++
T Consensus 200 ~-------~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~v~~~ 257 (377)
T 3dwl_C 200 A-------EY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITV-------------KLSQLPLRSL 257 (377)
T ss_dssp E-------CC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCE-------------ECSSSCEEEE
T ss_pred h-------cc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEee-------------cCCCCceEEE
Confidence 2 24 899999999999999 999999999999999999876421111333 3456789999
Q ss_pred EEeeCCCEEEEEecCeEEEEecC
Q 010933 330 KFANDGQHLLSRDYMNLKLWDIR 352 (497)
Q Consensus 330 ~~s~~g~~l~~~~~~~i~lwd~~ 352 (497)
+|+|++++|++++++.+.+|+..
T Consensus 258 ~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 258 LWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEEETTEEEEEESSSSEEEECCC
T ss_pred EEcCCCCEEEEEcCCcEEEEEeC
Confidence 99999999999988666688775
No 100
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2e-31 Score=254.35 Aligned_cols=254 Identities=14% Similarity=0.106 Sum_probs=191.6
Q ss_pred cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+|.+.|.+++|+| ++++|++|+.|+.|++||+.+... .......+|.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------------~~~~~~~~~~----------- 163 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI---------------------QVFAKTDSWD----------- 163 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE---------------------EEEECCCCSS-----------
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce---------------------EEEeccCCCC-----------
Confidence 5899999999999 789999999999999999986422 2222233445
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++| +|++.+|++++.|+.|++||+.. +
T Consensus 164 -~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~-~-------------------------------------------- 195 (383)
T 3ei3_B 164 -YWYCCVDV--SVSRQMLATGDSTGRLLLLGLDG-H-------------------------------------------- 195 (383)
T ss_dssp -CCEEEEEE--ETTTTEEEEEETTSEEEEEETTS-C--------------------------------------------
T ss_pred -CCeEEEEE--CCCCCEEEEECCCCCEEEEECCC-C--------------------------------------------
Confidence 77999999 57899999999999999999842 2
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccC---ceeeEEeecCCCccCCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS---DQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~ 263 (497)
++..+ .+|...|.+++|+|+++ ++++| .|+.|++||++.. +..... + +|.
T Consensus 196 ----------------~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~-~~~ 250 (383)
T 3ei3_B 196 ----------------EIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-------M-PHE 250 (383)
T ss_dssp ----------------EEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-------E-ECS
T ss_pred ----------------EEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-------e-cCC
Confidence 12222 68899999999999999 88998 9999999999842 333332 2 689
Q ss_pred CCeEEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCC----ccccccccccccEEEEeeCCCEE
Q 010933 264 EVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS----KSFFTEIIASISDIKFANDGQHL 338 (497)
Q Consensus 264 ~~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~g~~l 338 (497)
..|.+++|+| ++ .+|++++.|+.|++||+++++.. ..+..|...... ....-.....+..++|+|++++
T Consensus 251 ~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~- 324 (383)
T 3ei3_B 251 KPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL- 324 (383)
T ss_dssp SCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred CceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence 9999999999 98 99999999999999999987654 333332211000 0000001133445667777766
Q ss_pred EEEecCeEEEEecCCCCceeeeeeecc--cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 339 LSRDYMNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 339 ~~~~~~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
..+.|+.|++||+.+ ++++..+.++. ..+ ..++|+|++++|++|+ ||.|++||+++
T Consensus 325 s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~~---------------~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 325 LLNDKRTIDIYDANS-GGLVHQLRDPNAAGII---------------SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTCCCCEEEEETTT-CCEEEEECBTTBCSCC---------------CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ccCCCCeEEEEecCC-CceeeeecCCCCCceE---------------EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 223569999999987 88888888753 322 4679999999999997 99999999874
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-31 Score=249.30 Aligned_cols=213 Identities=16% Similarity=0.214 Sum_probs=171.8
Q ss_pred ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933 89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 168 (497)
Q Consensus 89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
.+..+.+|. +.|++++| +|++++|++++.|+.|++|++..+..
T Consensus 3 ~~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~----------------------- 45 (379)
T 3jrp_A 3 MVVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETH----------------------- 45 (379)
T ss_dssp --CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEE-----------------------
T ss_pred ccEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcc-----------------------
Confidence 356788998 99999999 68999999999999999999974331
Q ss_pred ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccC
Q 010933 169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEIS 245 (497)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~ 245 (497)
+.+..+ .+|...|.+++|+++ ++.|++| .|+.|++||+. .
T Consensus 46 -----------------------------------~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~ 88 (379)
T 3jrp_A 46 -----------------------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-N 88 (379)
T ss_dssp -----------------------------------EEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE-T
T ss_pred -----------------------------------eeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC-C
Confidence 122223 789999999999987 9999999 99999999999 4
Q ss_pred ce--eeEEeecCCCccCCCCCCeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933 246 DQ--CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 321 (497)
Q Consensus 246 ~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (497)
++ .... +..|...|.+++|+|+ + .+|++++.|+.|++||++++..... .. +..
T Consensus 89 ~~~~~~~~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~--~~-------------~~~ 145 (379)
T 3jrp_A 89 GRWSQIAV-------HAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP--II-------------IDA 145 (379)
T ss_dssp TEEEEEEE-------ECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCE--EE-------------EEC
T ss_pred CceeEeee-------ecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceee--EE-------------ecC
Confidence 43 2222 5679999999999999 8 9999999999999999987643210 11 234
Q ss_pred ccccccEEEEee-------------CCCEEEEEe-cCeEEEEecCCCCc---eeeeeeecccccccccccCCCCCcccee
Q 010933 322 IIASISDIKFAN-------------DGQHLLSRD-YMNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKF 384 (497)
Q Consensus 322 ~~~~i~~~~~s~-------------~g~~l~~~~-~~~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (497)
|...|.+++|+| ++.+|++++ ++.|++||++.... ....+.+|...+ +
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v---------------~ 210 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------R 210 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------E
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE---------------e
Confidence 567899999999 689999986 59999999986322 345666777654 7
Q ss_pred EEEEcCC---CCEEEEEeCCCcEEEEEcCCCC
Q 010933 385 ECSVSGD---GLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 385 ~~~~s~~---~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
+++|+|+ +++|++++.||.|++||+.++.
T Consensus 211 ~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 9999999 8999999999999999998764
No 102
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-30 Score=254.40 Aligned_cols=238 Identities=14% Similarity=0.071 Sum_probs=173.2
Q ss_pred cceeEEEEEecCCCCEE-EEEeCCccEEEeecC--chheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l-~s~s~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
+.|.+++| +|++++| ++++.|+.|++|++. +++.....
T Consensus 103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~------------------------------------- 143 (450)
T 2vdu_B 103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLR------------------------------------- 143 (450)
T ss_dssp CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-------------------------------------
T ss_pred CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeee-------------------------------------
Confidence 67999999 6899996 888899999999998 55432210
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
. ...|...|.+++|+|+++.|++| .++.|++|++.... .... ....+.+|...
T Consensus 144 --------------------~--~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~-~~~~---~~~~~~~h~~~ 197 (450)
T 2vdu_B 144 --------------------K--RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP-EEKF---TQEPILGHVSM 197 (450)
T ss_dssp --------------------E--EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC-CSSC---CCCCSEECSSC
T ss_pred --------------------e--cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc-cccc---cceeeecccCc
Confidence 0 02567889999999999999999 99999999998333 2210 00136789999
Q ss_pred eEEEEEeCC---CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933 266 ITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 342 (497)
Q Consensus 266 i~~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 342 (497)
|.+++|+|+ + .+|++++.|+.|++||+++++.. ..+ +.+|...|.+++|+ ++++|++++
T Consensus 198 v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~~------------~~~h~~~v~~~~~s-d~~~l~s~~ 259 (450)
T 2vdu_B 198 LTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DKW------------LFGHKHFVSSICCG-KDYLLLSAG 259 (450)
T ss_dssp EEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EEE------------CCCCSSCEEEEEEC-STTEEEEEE
T ss_pred eEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----eee------------ecCCCCceEEEEEC-CCCEEEEEe
Confidence 999999999 8 99999999999999999887543 221 12456889999999 999999986
Q ss_pred -cCeEEEEecCCCCceeeeeeeccccccccccc-----------CCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEc
Q 010933 343 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-----------YNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSH 409 (497)
Q Consensus 343 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~ 409 (497)
|+.|++||+++ ++++..+..+... ..++.. .....-..+.+++|+|++++|++++ .|+.|++|++
T Consensus 260 ~d~~v~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 260 GDDKIFAWDWKT-GKNLSTFDYNSLI-KPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSEEEEEETTT-CCEEEEEECHHHH-GGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred CCCeEEEEECCC-CcEeeeecchhhh-hhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 59999999987 8888877654311 000000 0001112347899999999999999 8999999999
Q ss_pred --CCCC--cceEEEeccCcceeeeEeec
Q 010933 410 --GVGS--AGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 410 --~~~~--~~~~~~~~~~~~v~~~~~~~ 433 (497)
.++. .....+..| ..+.++++++
T Consensus 338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 338 SEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp CSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred ccCCCCceeeccEeccC-CceEEEEecC
Confidence 4332 222344444 5555555554
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-31 Score=247.60 Aligned_cols=261 Identities=16% Similarity=0.134 Sum_probs=191.3
Q ss_pred EEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEE
Q 010933 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 117 (497)
Q Consensus 38 i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~ 117 (497)
..+.+++++||+|+.||.|++||+.+++. +..+. . ..|.++.|
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~-----------------------~~~~~--~------------~~v~~~~~ 84 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKT-----------------------ITTIT--T------------PNPRTGGE 84 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSC-----------------------EEEEE--E------------ECCCTTCC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcE-----------------------EEEEe--c------------CCceeeee
Confidence 34456889999999999999999988753 33333 2 55788888
Q ss_pred EecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEee
Q 010933 118 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV 197 (497)
Q Consensus 118 ~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (497)
+ |+ +++++.|++|++|+.... +.+|+.
T Consensus 85 ~--~~---~~s~s~D~~i~~w~~~~~------------------------------------------------~~~~~~ 111 (343)
T 3lrv_A 85 H--PA---IISRGPCNRLLLLYPGNQ------------------------------------------------ITILDS 111 (343)
T ss_dssp C--CS---EEEECSTTEEEEEETTTE------------------------------------------------EEEEET
T ss_pred C--Cc---eEEecCCCeEEEEEccCc------------------------------------------------eEEeec
Confidence 4 44 999999999999997642 234444
Q ss_pred cCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC
Q 010933 198 GNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 274 (497)
Q Consensus 198 ~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 274 (497)
... +.++.+..+|...|.+++|+| +++++++| .|+.|++||++ .++..... ...+...+.+++|+|+
T Consensus 112 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~------~~~~~~~i~~~~~~pd 181 (343)
T 3lrv_A 112 KTN---KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVH------SAKSDVEYSSGVLHKD 181 (343)
T ss_dssp TTC---CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-SSCEEEEE------CCCSSCCCCEEEECTT
T ss_pred CCc---ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEE------ecCCCCceEEEEECCC
Confidence 422 233333357888999999999 99999999 99999999999 45454432 2345668999999999
Q ss_pred CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCC
Q 010933 275 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMD 354 (497)
Q Consensus 275 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~ 354 (497)
+ .+|++|+.||.|++||+++++... ..+.. +|...|++++|+|+|.+|++++++.|++||++.
T Consensus 182 g-~~lasg~~dg~i~iwd~~~~~~~~---~~~~~------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~- 244 (343)
T 3lrv_A 182 S-LLLALYSPDGILDVYNLSSPDQAS---SRFPV------------DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK- 244 (343)
T ss_dssp S-CEEEEECTTSCEEEEESSCTTSCC---EECCC------------CTTSCEEEEEECTTSSEEEEEESSBEEEEETTS-
T ss_pred C-CEEEEEcCCCEEEEEECCCCCCCc---cEEec------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC-
Confidence 9 999999999999999999875431 11211 256899999999999999999888999999987
Q ss_pred Cceeeeeee---cccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcceEEEeccCcceeeeE
Q 010933 355 STPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKNENRKPI 430 (497)
Q Consensus 355 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 430 (497)
.+.+..+.. |...+. . .+++|+|++++|++++. |+.|++|++....... .. .++..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~-~~----~~~~~~~ 306 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTG---------T----VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNW-TK----DEESALC 306 (343)
T ss_dssp STTCBSSCCCBC-----C---------C----EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSE-EE----EEEEECC
T ss_pred CCcceeeccccccccccc---------c----eEEEECCCCCEEEEecCCCCcEEEEEEcccccce-Ee----cCceeEe
Confidence 665555443 222210 0 25999999999999998 9999999997664431 11 4455555
Q ss_pred eec
Q 010933 431 LQA 433 (497)
Q Consensus 431 ~~~ 433 (497)
+.+
T Consensus 307 ~~~ 309 (343)
T 3lrv_A 307 LQS 309 (343)
T ss_dssp C--
T ss_pred cCc
Confidence 554
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.4e-31 Score=255.62 Aligned_cols=266 Identities=16% Similarity=0.248 Sum_probs=204.0
Q ss_pred cccCCcceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
.+.|.+.|++++|+|+ +.+||+|+.||.|+||++...... +........+..+.+|.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~-------------~~~~~~~~~~~~~~~h~--------- 181 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSK-------------PEPSGECQPDLRLRGHQ--------- 181 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSS-------------CCTTCCCCCSEEEECCS---------
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccc-------------cCccccCCCcEEecCCC---------
Confidence 3568999999999997 789999999999999999763210 00001134567788898
Q ss_pred ccccceeEEEEEecCCCC-EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 107 EIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..|++++| ++++. +|++++.||.|++|++..+.....
T Consensus 182 ---~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------- 219 (430)
T 2xyi_A 182 ---KEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHR------------------------------------- 219 (430)
T ss_dssp ---SCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGG-------------------------------------
T ss_pred ---CCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCc-------------------------------------
Confidence 88999999 57777 999999999999999986431110
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCc--eeeEEeecCCCccCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDD 261 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~ 261 (497)
...+...+ .+|...|.+++|+| ++..|+++ .|+.|++||++... ..... +..
T Consensus 220 ----------------~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~-------~~~ 275 (430)
T 2xyi_A 220 ----------------VIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT-------VDA 275 (430)
T ss_dssp ----------------EEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE-------EEC
T ss_pred ----------------eeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE-------eec
Confidence 00112222 68999999999999 67788888 99999999999442 23332 457
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEE
Q 010933 262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS 340 (497)
Q Consensus 262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~ 340 (497)
|...|++++|+|++..+|++++.||.|++||+++.... ...+ ..|...|.+++|+|+++ +|++
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~-------------~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSF-------------ESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEE-------------ECCSSCEEEEEECSSCTTEEEE
T ss_pred CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEe-------------ecCCCCEEEEEECCCCCCEEEE
Confidence 89999999999998458999999999999999974321 1333 33568899999999996 5777
Q ss_pred Ee-cCeEEEEecCCCC-------------ceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEE
Q 010933 341 RD-YMNLKLWDIRMDS-------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLR 405 (497)
Q Consensus 341 ~~-~~~i~lwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~ 405 (497)
++ ++.|++||+...+ ..+..+.+|...+ ++++|+|+++ +|++++.||.|+
T Consensus 340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSSTTEEEEEETTSEEE
T ss_pred EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCCCCEEEEEECCCCEE
Confidence 64 5999999997522 4555566666543 7999999999 899999999999
Q ss_pred EEEcCCC
Q 010933 406 IFSHGVG 412 (497)
Q Consensus 406 vw~~~~~ 412 (497)
||++...
T Consensus 405 iw~~~~~ 411 (430)
T 2xyi_A 405 VWQMAEN 411 (430)
T ss_dssp EEEECHH
T ss_pred EeEcccc
Confidence 9999753
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.6e-30 Score=244.85 Aligned_cols=279 Identities=14% Similarity=0.154 Sum_probs=214.5
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCC---CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccc
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 164 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~---~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (497)
+.+..+.+|. +.|++++| +|+ +.+|++++.|+.|++||+.+....
T Consensus 30 ~~~~~~~~h~------------~~v~~~~~--~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~------------------ 77 (368)
T 3mmy_A 30 KDIEVTSSPD------------DSIGCLSF--SPPTLPGNFLIAGSWANDVRCWEVQDSGQT------------------ 77 (368)
T ss_dssp CCEECSSCCS------------SCEEEEEE--CCTTSSSEEEEEEETTSEEEEEEECTTSCE------------------
T ss_pred ceeEeccCCC------------CceEEEEE--cCCCCCceEEEEECCCCcEEEEEcCCCCce------------------
Confidence 4466788998 89999999 566 589999999999999999862211
Q ss_pred cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc
Q 010933 165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 243 (497)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~ 243 (497)
.... +.+|...|.+++|+|+++.|+++ .|+.|++||++
T Consensus 78 ----------------------------------------~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 78 ----------------------------------------IPKA-QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp ----------------------------------------EEEE-EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ----------------------------------------eEEE-eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence 1111 26899999999999999999999 99999999999
Q ss_pred cCceeeEEeecCCCccCCCCCCeEEEEE--eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933 244 ISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 321 (497)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (497)
.++... +..|...|.+++| +|++ .+|++++.||.|++||+++++.. ..+..
T Consensus 117 -~~~~~~--------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~------------- 169 (368)
T 3mmy_A 117 -SNQAIQ--------IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPM----MVLQL------------- 169 (368)
T ss_dssp -TTEEEE--------EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCS----EEEEC-------------
T ss_pred -CCCcee--------eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEE----EEEec-------------
Confidence 555544 3468999999999 8898 89999999999999999987654 44443
Q ss_pred ccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCE----EE
Q 010933 322 IIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH----FA 396 (497)
Q Consensus 322 ~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----l~ 396 (497)
...+.++.+. ...++++ .++.+++|+++............... ....+++.++... ++
T Consensus 170 -~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 170 -PERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKH--------------QHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp -SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS--------------CEEEEEEEECTTSCEEEEE
T ss_pred -CCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccC--------------CCceEEEcccCCCCCCeEE
Confidence 1245555554 4466665 56999999998643333333221111 0135666655544 99
Q ss_pred EEeCCCcEEEEEcCCCC--cceEEEeccCc------------ceeeeEeecCCCcccccccceeEeeccCc-eec--CCC
Q 010933 397 TGSYSNLLRIFSHGVGS--AGGITVEAGKN------------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSS 459 (497)
Q Consensus 397 s~~~dg~i~vw~~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~ 459 (497)
+++.||.|++|++.... .....+.+|.. ++.+++++| ++.+ |++|+.|+. ++| ..+
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~-----l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP--VHGT-----LATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT--TTCC-----EEEEETTSCEEEEETTTT
T ss_pred EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec--CCCE-----EEEEccCCeEEEEECCCC
Confidence 99999999999998864 23577888876 799999999 6666 999999999 999 334
Q ss_pred CCcccccccCCCeEEEEEecCCCEEEEEeCC
Q 010933 460 GHHELSYNLSSKLLHLAWHPTTNLIACANGN 490 (497)
Q Consensus 460 ~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~ 490 (497)
+.......|...|++++|+|++++||+++.+
T Consensus 306 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 306 TKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred cEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 4555677889999999999999999999865
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5e-32 Score=262.79 Aligned_cols=256 Identities=11% Similarity=0.077 Sum_probs=184.1
Q ss_pred cccCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
..+|.+.|++|+|+| ++++|++|+.||+|+|||++++.. ........+.
T Consensus 160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~---------------------~~~~~~~~~~--------- 209 (435)
T 4e54_B 160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL---------------------RVFASSDTIN--------- 209 (435)
T ss_dssp CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE---------------------EEEECCSSCS---------
T ss_pred ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce---------------------eEEeccCCCC---------
Confidence 346999999999998 789999999999999999976532 1112222233
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..+.+++| ++++.+|++|+.||.|++||+++.....
T Consensus 210 ---~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~~~~~~--------------------------------------- 245 (435)
T 4e54_B 210 ---IWFCSLDV--SASSRMVVTGDNVGNVILLNMDGKELWN--------------------------------------- 245 (435)
T ss_dssp ---CCCCCEEE--ETTTTEEEEECSSSBEEEEESSSCBCCC---------------------------------------
T ss_pred ---ccEEEEEE--CCCCCEEEEEeCCCcEeeeccCcceeEE---------------------------------------
Confidence 56788999 6889999999999999999986433111
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
+.+|...|.+++|+|+++ ++++| .|+.|++||++........ ....+|..
T Consensus 246 -----------------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~h~~ 297 (435)
T 4e54_B 246 -----------------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-----LYSLPHRH 297 (435)
T ss_dssp -----------------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----SBCCBCSS
T ss_pred -----------------------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----EEeeeccc
Confidence 268999999999999876 56777 9999999999843322211 12467999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE---
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--- 341 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--- 341 (497)
.|++++|+|++ .+|++++.||.|++||++++... ..+..|...... ......+.|+|++.+++++
T Consensus 298 ~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 365 (435)
T 4e54_B 298 PVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCP----LGLIPHPHRHFQ-------HLTPIKAAWHPRYNLIVVGRYP 365 (435)
T ss_dssp CEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSE----EEECCCCCCCCS-------SSCCCBCEECSSSSCEEEECCC
T ss_pred cccceeECCCC-CeeEEEcCCCEEEEEECCCCccc----eEEecccccccc-------cceeEEEEEcCCCCEEEEEEcC
Confidence 99999999999 99999999999999999987654 222222111100 0112334455555555443
Q ss_pred ---------ec-CeEEEEecCCCCceeeeee-ecccccccccccCCCCCccceeEE-EEcCCCCEEEEEeCCCcEEEEEc
Q 010933 342 ---------DY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 342 ---------~~-~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
.+ +.|++||..+ ++.+..+. .|...+ .++ +|+|+|++|++|+ |+.|+||++
T Consensus 366 d~~~~~~~~~~~~~i~iwd~~~-g~~~~~l~~~~~~~v---------------~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 366 DPNFKSCTPYELRTIDVFDGNS-GKMMCQLYDPESSGI---------------SSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp CTTSCCSSTTCCCCEEEECSSS-CCEEEEECCSSCCCC---------------CCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred CCCeEEEEecCCCEEEEEECCC-CcEEEEEeCCCCCcE---------------EEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 12 6799999987 77777664 444433 355 7999999999876 789999999
Q ss_pred CCCCc
Q 010933 410 GVGSA 414 (497)
Q Consensus 410 ~~~~~ 414 (497)
++++.
T Consensus 429 ~~gk~ 433 (435)
T 4e54_B 429 QEART 433 (435)
T ss_dssp C----
T ss_pred CcCee
Confidence 98743
No 107
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.9e-30 Score=248.70 Aligned_cols=264 Identities=14% Similarity=0.202 Sum_probs=216.3
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|.+.|.+++|+ +++|++|+.||.|++||+.+++ .+..+.+|.
T Consensus 157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~------------ 199 (445)
T 2ovr_B 157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----------------------CIHTLYGHT------------ 199 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS------------
T ss_pred CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----------------------EEEEECCCC------------
Confidence 589999999998 5699999999999999998764 367788898
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++|. +..+++++.|+.|++||+.+++...
T Consensus 200 ~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~------------------------------------------ 233 (445)
T 2ovr_B 200 STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLH------------------------------------------ 233 (445)
T ss_dssp SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEE------------------------------------------
T ss_pred CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEE------------------------------------------
Confidence 889999993 4589999999999999998765322
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.+ .+|...|.++++ +++.+++| .|+.|++||++ .++.... +.+|...|.+
T Consensus 234 ------------------~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~-------~~~~~~~v~~ 284 (445)
T 2ovr_B 234 ------------------VL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE-TETCLHT-------LQGHTNRVYS 284 (445)
T ss_dssp ------------------EE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG-GTEEEEE-------ECCCSSCEEE
T ss_pred ------------------EE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC-CCcEeEE-------ecCCCCceEE
Confidence 22 688899999999 67889998 99999999998 4555554 6789999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++| ++ ..+++++.|+.|++||+++++.. ..+.. |...+.++.+ +++++++++ ||.|+
T Consensus 285 ~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~----~~~~~-------------~~~~v~~~~~--~~~~l~~~~~dg~i~ 342 (445)
T 2ovr_B 285 LQF--DG-IHVVSGSLDTSIRVWDVETGNCI----HTLTG-------------HQSLTSGMEL--KDNILVSGNADSTVK 342 (445)
T ss_dssp EEE--CS-SEEEEEETTSCEEEEETTTCCEE----EEECC-------------CCSCEEEEEE--ETTEEEEEETTSCEE
T ss_pred EEE--CC-CEEEEEeCCCeEEEEECCCCCEE----EEEcC-------------CcccEEEEEE--eCCEEEEEeCCCeEE
Confidence 999 56 89999999999999999987654 33333 4456776665 567888885 59999
Q ss_pred EEecCCCCceeeeeee---cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE-----
Q 010933 348 LWDIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV----- 419 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~----- 419 (497)
+||+++ ++.+..+.. |...+ ++++|+ +++|++|+.||.|++||+.+++.+ ..+
T Consensus 343 vwd~~~-~~~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~ 403 (445)
T 2ovr_B 343 IWDIKT-GQCLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKLWDLKTGEFI-RNLVTLES 403 (445)
T ss_dssp EEETTT-CCEEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTCCEE-EEEEECTT
T ss_pred EEECCC-CcEEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEEEECCCCcee-eeeecccc
Confidence 999986 888888876 44332 678885 689999999999999999998655 555
Q ss_pred eccCcceeeeEeecCCCcccccccceeEeeccCc
Q 010933 420 EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 453 (497)
Q Consensus 420 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~ 453 (497)
..|.+++++++++| ++.. +++|+.||.
T Consensus 404 ~~~~~~v~~~~~s~--~~~~-----la~~~~dg~ 430 (445)
T 2ovr_B 404 GGSGGVVWRIRASN--TKLV-----CAVGSRNGT 430 (445)
T ss_dssp GGGTCEEEEEEECS--SEEE-----EEEECSSSS
T ss_pred CCCCceEEEEEecC--CEEE-----EEEcccCCC
Confidence 47889999999998 5666 899998884
No 108
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-30 Score=239.08 Aligned_cols=246 Identities=19% Similarity=0.294 Sum_probs=198.9
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|...|++++|+|+|++||+|+.||.|+|||+++++ .+..+.+|.
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----------------------~~~~~~~h~------------ 109 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS------------ 109 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS------------
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----------------------eEEEecCcc------------
Confidence 578899999999999999999999999999998874 367788998
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..+.++.+ ++..+++++.++.+++|+......
T Consensus 110 ~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~-------------------------------------------- 141 (318)
T 4ggc_A 110 ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEH-------------------------------------------- 141 (318)
T ss_dssp SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSC--------------------------------------------
T ss_pred ceEEEeec----CCCEEEEEecCCceEeeecCCCce--------------------------------------------
Confidence 77777665 356999999999999999876441
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.+..+ .+|...+..+.++++++.++++ .|+.|++||+++........ .....+...|.+
T Consensus 142 ---------------~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~v~~ 201 (318)
T 4ggc_A 142 ---------------HVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQGAVKA 201 (318)
T ss_dssp ---------------EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----EEECCCCSCEEE
T ss_pred ---------------eEEEE-cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----eeecccCCceEE
Confidence 12222 6889999999999999999999 99999999998433211110 124567889999
Q ss_pred EEEeCCCCcEEE--EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe---c
Q 010933 269 AEFHPIYCNLLA--YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y 343 (497)
Q Consensus 269 ~~~~~~~~~~l~--~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~ 343 (497)
++++|.+...+. +++.++.|++||.+..... .... +...+..+.|+|++..+++++ |
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~~~--------------~~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVD--------------AHSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp EEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EEEE--------------CSSCEEEEEEETTTTEEEEEECTTT
T ss_pred EEecCCCCcEEEEEecCCCCEEEEEeccccccc----cccc--------------ceeeeeeeeecccccceEEEEEcCC
Confidence 999998755543 5567899999999876533 1111 236789999999999887753 5
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
+.|++||+++ ++++.++.+|...+ ++++|+|++++|++|+.||+|+|||+.+.
T Consensus 264 ~~i~iwd~~~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 264 NQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999997 89999999998865 79999999999999999999999999754
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=2e-30 Score=249.04 Aligned_cols=255 Identities=13% Similarity=0.129 Sum_probs=199.8
Q ss_pred ccCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 29 ~~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
.+|.+.|++++|+| ++++||+|+.||.|+|||+.++... ....+.+..+.+|.
T Consensus 78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~----------------~~~~~~~~~~~~h~---------- 131 (402)
T 2aq5_A 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV----------------LPLREPVITLEGHT---------- 131 (402)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS----------------SCBCSCSEEEECCS----------
T ss_pred ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc----------------cccCCceEEecCCC----------
Confidence 36999999999999 9999999999999999999876320 00113466788898
Q ss_pred cccceeEEEEEecCCC-CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 108 IEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..|.+++| +|++ .+|++++.|+.|++||+.+++...
T Consensus 132 --~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------------------------- 168 (402)
T 2aq5_A 132 --KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGAAVL--------------------------------------- 168 (402)
T ss_dssp --SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTEEEE---------------------------------------
T ss_pred --CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCCccE---------------------------------------
Confidence 89999999 5776 699999999999999998766332
Q ss_pred ccCcceEEEeecCCccceeeeeec-cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCcc-CCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYP-HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLT 263 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~ 263 (497)
.+. ..|...|.+++|+|+++.|+++ .|+.|++||++ .++.... + ..|.
T Consensus 169 ---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~-------~~~~~~ 219 (402)
T 2aq5_A 169 ---------------------TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR-KGTVVAE-------KDRPHE 219 (402)
T ss_dssp ---------------------EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEE-------EECSSC
T ss_pred ---------------------EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC-CCceeee-------eccCCC
Confidence 111 4788999999999999999999 99999999999 4555544 3 5676
Q ss_pred CC-eEEEEEeCCCCcEEEEE---eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 264 EV-ITSAEFHPIYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 264 ~~-i~~~~~~~~~~~~l~~~---~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
.. +.+++|+|++ .+|+++ +.|+.|++||+++++... ..... .|...+.+++|+|++++|+
T Consensus 220 ~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~---~~~~~------------~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 220 GTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPL---SLQEL------------DTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp SSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCS---EEEEC------------CCCSSCEEEEEETTTTEEE
T ss_pred CCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCc---eEEec------------cCCCceeEEEEcCCCCEEE
Confidence 65 8999999999 899998 789999999999865321 11111 2346799999999999986
Q ss_pred E-Ee-cCeEEEEecCCCCceeeeeeecc--cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 340 S-RD-YMNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 340 ~-~~-~~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
+ |+ |+.|++||+......+..+..+. ..+ .+++|+|++.++++ .++.+++|++.++..
T Consensus 284 ~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v---------------~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 284 LCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQ---------------RGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEETTCSCEEEEEECSSTTCEEEEEEECCSSCC---------------SEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEEcCCCeEEEEEecCCCcceEeecccccCCcc---------------cceEEeccccccee--cceeEEEEEcCCCcE
Confidence 5 53 69999999987333366666554 322 68999999998874 567999999988644
No 110
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.3e-30 Score=235.81 Aligned_cols=242 Identities=17% Similarity=0.255 Sum_probs=196.1
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|...|.+++|+|++++|++|+.||.|++|++..... .+....+.+|.
T Consensus 57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~--------------------~~~~~~~~~~~------------ 104 (313)
T 3odt_A 57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG--------------------EDPLYTLIGHQ------------ 104 (313)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT--------------------SCC-CEECCCS------------
T ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC--------------------CCcccchhhcc------------
Confidence 5789999999999999999999999999999876431 23456678888
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| ++.++++++.|+.|++|| .++
T Consensus 105 ~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~--------------------------------------------- 133 (313)
T 3odt_A 105 GNVCSLSF----QDGVVISGSWDKTAKVWK--EGS--------------------------------------------- 133 (313)
T ss_dssp SCEEEEEE----ETTEEEEEETTSEEEEEE--TTE---------------------------------------------
T ss_pred cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCc---------------------------------------------
Confidence 88999999 356999999999999999 222
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
.+..+ ..|...+.++.|+| +++.++++ .|+.|++||.. .....+ ...|...+.
T Consensus 134 ---------------~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~------~~~~~~~i~ 188 (313)
T 3odt_A 134 ---------------LVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTF------SGIHNDVVR 188 (313)
T ss_dssp ---------------EEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEE------CSSCSSCEE
T ss_pred ---------------EEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEE------eccCcccEE
Confidence 11222 67889999999988 89999999 99999999944 333331 223889999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 347 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~ 347 (497)
+++|+|++ . +++++.||.|++||+++++.. ..+. +|...+.+++|+|++.+++++.++.|+
T Consensus 189 ~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~----~~~~-------------~~~~~i~~~~~~~~~~l~~~~~dg~v~ 249 (313)
T 3odt_A 189 HLAVVDDG-H-FISCSNDGLIKLVDMHTGDVL----RTYE-------------GHESFVYCIKLLPNGDIVSCGEDRTVR 249 (313)
T ss_dssp EEEEEETT-E-EEEEETTSEEEEEETTTCCEE----EEEE-------------CCSSCEEEEEECTTSCEEEEETTSEEE
T ss_pred EEEEcCCC-e-EEEccCCCeEEEEECCchhhh----hhhh-------------cCCceEEEEEEecCCCEEEEecCCEEE
Confidence 99999998 6 999999999999999987644 3333 356789999999999644444569999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
+||+++ ++++..+..|...+ ++++|+|+++ +++++.||.|++|++++++..
T Consensus 250 iwd~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 250 IWSKEN-GSLKQVITLPAISI---------------WSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EECTTT-CCEEEEEECSSSCE---------------EEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EEECCC-CceeEEEeccCceE---------------EEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 999987 88888998887654 6899999998 667999999999999886443
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=7.2e-30 Score=240.39 Aligned_cols=249 Identities=11% Similarity=0.113 Sum_probs=175.0
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|.+.|+|++|+|||++||+|+.++ ++||++++++. . ...+.
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------------------~--~~~~~------------ 58 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------------------I--MSQEM------------ 58 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------------------E--EEEEC------------
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------------------e--eeeec------------
Confidence 4889999999999999999998775 78999876532 1 11121
Q ss_pred cceeEEEEEecCCCCEE-EEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 110 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l-~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..+..+++. +++..+ ++++.|++|++||+.+++...
T Consensus 59 ~~~~~~~~~--~~~~~~~~~~~~d~~v~iWd~~~~~~~~----------------------------------------- 95 (355)
T 3vu4_A 59 RHLSKVRML--HRTNYVAFVTGVKEVVHIWDDVKKQDVS----------------------------------------- 95 (355)
T ss_dssp SCCCEEEEC--TTSSEEEEECSSTTEEEEEETTTTEEEE-----------------------------------------
T ss_pred CCeEEEEEc--CCCCEEEEEECCccEEEEEECCCCcEEE-----------------------------------------
Confidence 336778884 555666 566788999999998776332
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.+ .+...|.+++++++. ++++.++.|++||+....+.+.. +.. +...
T Consensus 96 -------------------~~--~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~-------~~~---~~~~ 142 (355)
T 3vu4_A 96 -------------------RI--KVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITD-------DIR---FGGV 142 (355)
T ss_dssp -------------------EE--ECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSC-------CEE---EEEE
T ss_pred -------------------EE--ECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEE-------ecc---CCce
Confidence 11 345689999998764 55556889999999844233332 222 4445
Q ss_pred EEEeCCCCcEEEE--EeCCCeEEEEEccCCcccccccceecccccccCC-ccccccccccccEEEEeeCCCEEEEEec-C
Q 010933 269 AEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRDY-M 344 (497)
Q Consensus 269 ~~~~~~~~~~l~~--~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~ 344 (497)
+++++ . ++++ ++.||.|++||+++++.......... .....+ ...+.+|...|.+++|+|+|++|++|+. +
T Consensus 143 ~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~--~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 143 CEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ--QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp EEEET-T--EEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred EEEEc-c--EEEEeCCCcCcEEEEEECCCCCcccccccccc--ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence 66777 3 4554 57899999999997642210000000 000011 2345678899999999999999999864 9
Q ss_pred e-EEEEecCCCCceeeeee-e-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933 345 N-LKLWDIRMDSTPVATFK-I-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 345 ~-i~lwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
. |++||+++ ++++..+. + |...+ ++++|+|++++|++++.|+.|++||+..+.
T Consensus 218 ~~v~iwd~~~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 218 TIIRVFKTED-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp SEEEEEETTT-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred CEEEEEECCC-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 8 99999997 88888887 4 76654 799999999999999999999999998753
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.7e-29 Score=245.08 Aligned_cols=263 Identities=15% Similarity=0.257 Sum_probs=213.7
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| +++++++|+.||.|++||+.+++..
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~------------------------------------------- 166 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECK------------------------------------------- 166 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEE-------------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEE-------------------------------------------
Confidence 67888876 6789999999999999999876632
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
..+ .+|...|.+++| +++.|++| .||.|++||+. .++.... +.+|...|.+
T Consensus 167 -----------------~~~-~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~-~~~~~~~-------~~~h~~~v~~ 218 (435)
T 1p22_A 167 -----------------RIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN-TGEMLNT-------LIHHCEAVLH 218 (435)
T ss_dssp -----------------EEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS-SCCEEEE-------ECCCCSCEEE
T ss_pred -----------------EEE-cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC-CCcEEEE-------EcCCCCcEEE
Confidence 222 789999999998 78899999 99999999999 4555554 6789999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|++ ..+++++.||.|++||+++++.. .... .+.+|...|.+++| +++++++|+ |+.|+
T Consensus 219 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~----~~~~----------~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 219 LRFNN---GMMVTCSKDRSIAVWDMASPTDI----TLRR----------VLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp EECCT---TEEEEEETTSCEEEEECSSSSCC----EEEE----------EECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEEcC---CEEEEeeCCCcEEEEeCCCCCCc----eeee----------EecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 99974 58999999999999999886533 1111 12446688999988 678999885 59999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+||+++ ++.+..+.+|...+ .+++| ++++|++|+.||.|++||+.+++. ...+.+|..++.
T Consensus 280 vwd~~~-~~~~~~~~~~~~~v---------------~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~ 340 (435)
T 1p22_A 280 VWNTST-CEFVRTLNGHKRGI---------------ACLQY--RDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVR 340 (435)
T ss_dssp EEETTT-CCEEEEEECCSSCE---------------EEEEE--ETTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEE
T ss_pred EEECCc-CcEEEEEcCCCCcE---------------EEEEe--CCCEEEEEeCCCeEEEEECCCCCE-EEEEeCCcCcEE
Confidence 999987 88899999888754 56777 578999999999999999998855 488999999999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eecCC--CC---------CcccccccCCCeEEEEEecCCCEEEEEe-CCceEE
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SG---------HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 494 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~---------~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i 494 (497)
++++ ++.. +++|+.||. ++|.. +. ......+|...|++++| ++.+|++++ ++.+++
T Consensus 341 ~~~~----~~~~-----l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 341 CIRF----DNKR-----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp EEEC----CSSE-----EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred EEEe----cCCE-----EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 9998 3444 999999999 99921 11 33456689999999999 788899998 555999
Q ss_pred Ee
Q 010933 495 HY 496 (497)
Q Consensus 495 ~~ 496 (497)
|+
T Consensus 410 wd 411 (435)
T 1p22_A 410 WD 411 (435)
T ss_dssp EC
T ss_pred EE
Confidence 96
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-31 Score=256.60 Aligned_cols=288 Identities=8% Similarity=0.011 Sum_probs=203.9
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| +|||+++|+++.|++|+ |...++.. . ... ..+....+.++
T Consensus 16 ~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~l---~-gh~------------------------~~v~~V~FsPd 63 (588)
T 2j04_A 16 DWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAKDI---N-CNS------------------------KNLFHVKEFPL 63 (588)
T ss_dssp SSSCCEEE--CTTSCEEEECSSSEEEE--EECCCSCC---S-SBG------------------------GGTEEEEEECC
T ss_pred ccEEEEEE--CCCCCEEEEEcCCceee--ccccccee---c-CCC------------------------ccEEEEEECCC
Confidence 88999999 79999999999999999 64433322 1 111 11222223333
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC----
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE---- 264 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---- 264 (497)
+..+.|++... +....+...|...|.+++|+|+|+.|+++ .||.|++||.+ . .... +. |..
T Consensus 64 g~~~~~~~~~~---~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~-~--~l~~-------l~-~~~~~~~ 129 (588)
T 2j04_A 64 EFENKLDFELA---QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN-K--MLTN-------LD-SKGNLSS 129 (588)
T ss_dssp CCCCTTTTSCC---CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-E--EEEE-------CC-CSSCSTT
T ss_pred CCcceEEEEeC---CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-c--eeee-------cc-CCCcccc
Confidence 33444444422 12122212668899999999999999999 99999999965 2 4443 44 444
Q ss_pred -CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc---ccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 265 -VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 265 -~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
.+.+++|+|+| ++||+|+.||+|++||+.++..... ....+..+ ..+|...|.+++|+|+| ++++
T Consensus 130 ~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~---------~~gh~~~V~sVawSPdg-Laas 198 (588)
T 2j04_A 130 RTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS---------DAGSKDWVTHIVWYEDV-LVAA 198 (588)
T ss_dssp TCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS---------CTTCCCCEEEEEEETTE-EEEE
T ss_pred ccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc---------cccccccEEEEEEcCCc-EEEE
Confidence 59999999999 9999999999999999998743110 11333221 13467899999999999 5555
Q ss_pred EecCeEEEEecCCCCce---eeeee-ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce
Q 010933 341 RDYMNLKLWDIRMDSTP---VATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 416 (497)
Q Consensus 341 ~~~~~i~lwd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~ 416 (497)
+.|+.|++||+.. ++. ..+++ +|...+ .+++|+ |+.||+++ ++.|++||+.+++..
T Consensus 199 s~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~V---------------~svaFs--g~~LASa~-~~tIkLWd~~~~~~~- 258 (588)
T 2j04_A 199 LSNNSVFSMTVSA-SSHQPVSRMIQNASRRKI---------------TDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS- 258 (588)
T ss_dssp ETTCCEEEECCCS-SSSCCCEEEEECCCSSCC---------------CCEEEE--TTEEEEEC-SSEEEEEETTTTEEE-
T ss_pred eCCCeEEEEECCC-CccccceeeecccccCcE---------------EEEEEE--CCEEEEEe-CCeEEEEECCCCeEE-
Confidence 6779999999975 442 24563 665544 689999 68999998 699999999976443
Q ss_pred EEEeccCcceeeeEe--ecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEE
Q 010933 417 ITVEAGKNENRKPIL--QAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 494 (497)
Q Consensus 417 ~~~~~~~~~v~~~~~--~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i 494 (497)
....+|...+..+++ ++ ++.. +++++.+|.++|... .++++|++..+|.+ ++.+++
T Consensus 259 ~~~~gh~~~V~~va~~~s~--d~~~-----La~a~edG~klw~~d--------------~~~~spd~~l~a~~-d~~v~l 316 (588)
T 2j04_A 259 SLKTGSLENFHIIPLNHEK--ESTI-----LLMSNKTSYKVLLED--------------ELHVTADNIIAPYL-EKKFKK 316 (588)
T ss_dssp EEECSCCSCCCEEEETTCS--SCEE-----EEECSSCEEEEEESS--------------SEEEECCCSSHHHH-HHHHHH
T ss_pred EEEcCCCceEEEEEeeeCC--CCCE-----EEEEcCCCCEEEeec--------------cEEECCCceEEEEc-CCEEEE
Confidence 223389999999999 76 6666 899998888899333 36699999887765 444555
Q ss_pred Ee
Q 010933 495 HY 496 (497)
Q Consensus 495 ~~ 496 (497)
|+
T Consensus 317 W~ 318 (588)
T 2j04_A 317 WS 318 (588)
T ss_dssp TT
T ss_pred EE
Confidence 43
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.3e-29 Score=245.32 Aligned_cols=263 Identities=14% Similarity=0.176 Sum_probs=198.1
Q ss_pred ccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 105 SLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 105 ~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
.+.|.+.|++++|+ |+ +.+|++++.||.|++|++.........
T Consensus 124 ~~~h~~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------------------------------- 167 (430)
T 2xyi_A 124 KINHEGEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPEP---------------------------------- 167 (430)
T ss_dssp EEEESSCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCCT----------------------------------
T ss_pred EEcCCCcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccCc----------------------------------
Confidence 33444999999995 54 678999999999999999763211000
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (497)
.....++..+ .+|...|.+++|+|++. .|++| .||.|++|++.........+. ....+.+
T Consensus 168 ----------------~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~ 229 (430)
T 2xyi_A 168 ----------------SGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFTG 229 (430)
T ss_dssp ----------------TCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CSEEECC
T ss_pred ----------------cccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-cceeecC
Confidence 0001233333 68999999999999988 99999 999999999984222111100 0012568
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEE
Q 010933 262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS 340 (497)
Q Consensus 262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~ 340 (497)
|...|.+++|+|++..+|++++.||.|++||++++... .....+ ..|...+++++|+|+++ ++++
T Consensus 230 h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~-------------~~~~~~v~~i~~~p~~~~~l~t 295 (430)
T 2xyi_A 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTV-------------DAHTAEVNCLSFNPYSEFILAT 295 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSEEE-------------ECCSSCEEEEEECSSCTTEEEE
T ss_pred CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cceeEe-------------ecCCCCeEEEEeCCCCCCEEEE
Confidence 99999999999954489999999999999999976311 001222 34568899999999997 5777
Q ss_pred Ee-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcCCCC-----
Q 010933 341 RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS----- 413 (497)
Q Consensus 341 ~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~~~~----- 413 (497)
|+ +|.|++||++....++..+..|...+ ++++|+|+++ +|++++.||.|+|||+....
T Consensus 296 g~~dg~v~vwd~~~~~~~~~~~~~h~~~v---------------~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 296 GSADKTVALWDLRNLKLKLHSFESHKDEI---------------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp EETTSEEEEEETTCTTSCSEEEECCSSCE---------------EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred EeCCCeEEEEeCCCCCCCeEEeecCCCCE---------------EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 75 49999999987567788888887754 7999999985 69999999999999998732
Q ss_pred --------cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 414 --------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 414 --------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.....+.+|...++.++|+| ++.. .+++++.|+. ++|
T Consensus 361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~----~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 361 EDAEDGPPELLFIHGGHTAKISDFSWNP--NEPW----IICSVSEDNIMQVW 406 (430)
T ss_dssp HHHHHCCTTEEEECCCCSSCEEEEEECS--SSTT----EEEEEETTSEEEEE
T ss_pred cccccCCcceEEEcCCCCCCceEEEECC--CCCC----EEEEEECCCCEEEe
Confidence 34567788999999999999 4441 3899999999 999
No 115
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=247.29 Aligned_cols=247 Identities=14% Similarity=0.183 Sum_probs=169.5
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|++++| +|++.+|++|+.||.|++|++.+++.......
T Consensus 29 ~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~-------------------------------------- 68 (447)
T 3dw8_B 29 DIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSR-------------------------------------- 68 (447)
T ss_dssp GSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCC--------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccc--------------------------------------
Confidence 88999999 68999999999999999999987652110000
Q ss_pred cceEEEeecCCccceeeeeeccCCC------------CCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeec
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHD------------FNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDM 254 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 254 (497)
+ ..++...+ .+|. ..|.+++|+|++ ..|+++ .|+.|++||+.........+..
T Consensus 69 ~-----------~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~ 136 (447)
T 3dw8_B 69 G-----------EYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL 136 (447)
T ss_dssp C-----------CEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSC
T ss_pred c-----------ceeEeccc-ccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecc
Confidence 0 01122333 5776 889999999998 788888 9999999999832211000000
Q ss_pred CC--------------------------------CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccc
Q 010933 255 KP--------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 302 (497)
Q Consensus 255 ~~--------------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 302 (497)
.. ....+|...|.+++|+|++ .+|+++ .|+.|++||+++.....
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~-- 212 (447)
T 3dw8_B 137 KEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSF-- 212 (447)
T ss_dssp C--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEE--
T ss_pred cCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCcee--
Confidence 00 0136799999999999999 999998 89999999998533221
Q ss_pred cceecccccccCCccccccccccccEEEEeeCC-CEEEEEe-cCeEEEEecCCCCce----eeeeeecccccccccccCC
Q 010933 303 ARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYN 376 (497)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~-~~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~ 376 (497)
..+.. ....+.+|...|.+++|+|++ ++|++|+ |+.|++||+++ ++. +..+..|.......- +
T Consensus 213 -~~~~~------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~--~- 281 (447)
T 3dw8_B 213 -NIVDI------KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSF--F- 281 (447)
T ss_dssp -EEEEC------CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECCC-----CCH--H-
T ss_pred -eeeec------ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEeccCCCcccccc--c-
Confidence 21111 011345678899999999998 8999986 59999999986 554 677777764100000 0
Q ss_pred CCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 377 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 377 ~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
......+.+++|+|++++|++++. +.|++||+.+.......+.+|..
T Consensus 282 ~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~ 328 (447)
T 3dw8_B 282 SEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEY 328 (447)
T ss_dssp HHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGG
T ss_pred cccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccc
Confidence 000001379999999999999999 99999999873344466766643
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-29 Score=257.97 Aligned_cols=250 Identities=15% Similarity=0.150 Sum_probs=189.7
Q ss_pred ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933 91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 170 (497)
Q Consensus 91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (497)
..+.+|. +.|++++| +|++++|++++.||.|++|++.++..
T Consensus 3 ~~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~------------------------- 43 (753)
T 3jro_A 3 VIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETH------------------------- 43 (753)
T ss_dssp -----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEE-------------------------
T ss_pred eecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCC-------------------------
Confidence 4577888 99999999 68899999999999999999874331
Q ss_pred ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCce
Q 010933 171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ 247 (497)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~ 247 (497)
+++..+ .+|...|.+++|+|+ ++.|++| .||.|++||+. .++
T Consensus 44 ---------------------------------~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~-~~~ 88 (753)
T 3jro_A 44 ---------------------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-NGR 88 (753)
T ss_dssp ---------------------------------EEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE-TTE
T ss_pred ---------------------------------ccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC-CCc
Confidence 122233 789999999999987 9999999 99999999998 443
Q ss_pred eeEEeecCCCccCCCCCCeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933 248 CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 325 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (497)
.... ..+.+|...|.+++|+|+ + .++++++.||.|++||++++..... .. +.+|...
T Consensus 89 ~~~~-----~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~--~~-------------~~~~~~~ 147 (753)
T 3jro_A 89 WSQI-----AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP--II-------------IDAHAIG 147 (753)
T ss_dssp EEEE-----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCC--EE-------------EECCSSC
T ss_pred cccc-----ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcce--eE-------------eecCCCc
Confidence 2111 126789999999999999 8 9999999999999999988643211 11 2345688
Q ss_pred ccEEEEee-------------CCCEEEEEe-cCeEEEEecCCCC---ceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933 326 ISDIKFAN-------------DGQHLLSRD-YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 388 (497)
Q Consensus 326 i~~~~~s~-------------~g~~l~~~~-~~~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (497)
|.+++|+| ++.++++|+ ||.|++||++... .+...+.+|...+ ++++|
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V---------------~~l~~ 212 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVAW 212 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEEE
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE---------------EEEEe
Confidence 99999999 588898885 5999999998632 4556677777654 79999
Q ss_pred cCC---CCEEEEEeCCCcEEEEEcCCCCcc----eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 389 SGD---GLHFATGSYSNLLRIFSHGVGSAG----GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 389 s~~---~~~l~s~~~dg~i~vw~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
+|+ +++|++|+.||.|++||+.++... ......|...+.+++|+| ++.. +++|+.||. ++|.
T Consensus 213 sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~-----l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 213 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL--SGNV-----LALSGGDNKVTLWK 282 (753)
T ss_dssp CCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT--TTCC-----EEEECSSSCEECCB
T ss_pred ccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC--CCCE-----EEEEcCCCEEEEEe
Confidence 999 899999999999999999886321 122334666666666666 4444 666666666 6663
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=3.3e-28 Score=235.97 Aligned_cols=280 Identities=7% Similarity=0.048 Sum_probs=211.3
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
....+.+++|+|++.++++++.++.|++||+.+++.. .......+.+|. .
T Consensus 121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~------------------~~~~~~~~~~~~------------~ 170 (433)
T 3bws_A 121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV------------------RLSPPEKYKKKL------------G 170 (433)
T ss_dssp CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE------------------EECCCHHHHTTC------------C
T ss_pred CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe------------------eecCcccccccC------------C
Confidence 3455779999998888888888999999999887530 000111456777 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.+++| ++++.++++++.|+.|++||+.+++...
T Consensus 171 ~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~------------------------------------------- 205 (433)
T 3bws_A 171 FVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKA------------------------------------------- 205 (433)
T ss_dssp EEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEE-------------------------------------------
T ss_pred ceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEE-------------------------------------------
Confidence 8999999 6788999999999999999998765322
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.+ ..|...+.+++|+|+++.++ ++ .++.|++||++ .++.... +.. ...+.+
T Consensus 206 -----------------~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~-------~~~-~~~~~~ 258 (433)
T 3bws_A 206 -----------------TV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRK-------TDK-IGLPRG 258 (433)
T ss_dssp -----------------EE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEE-------CCC-CSEEEE
T ss_pred -----------------EE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEE-------ecC-CCCceE
Confidence 12 46778899999999999885 56 79999999998 5555544 332 345899
Q ss_pred EEEeCCCCcEEEEEe--------CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 269 AEFHPIYCNLLAYSS--------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~--------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
++|+|++ ..+++++ .|+.|++||+++++.. ..+. |...+.+++|+|+++.+++
T Consensus 259 ~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~~--------------~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 259 LLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DTIG--------------PPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp EEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EEEE--------------EEECEEEEEECSSTTEEEE
T ss_pred EEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----eecc--------------CCCCcceEEECCCCCEEEE
Confidence 9999999 8888887 5889999999987543 2221 2346789999999986654
Q ss_pred -Ee-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---------------CCc
Q 010933 341 -RD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---------------SNL 403 (497)
Q Consensus 341 -~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---------------dg~ 403 (497)
+. ++.|++||+.+ ++.+..+..... + .+++|+|++++|++++. ||.
T Consensus 320 ~~~~~~~v~v~d~~~-~~~~~~~~~~~~-~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~ 382 (433)
T 3bws_A 320 SDMCCSKIEVYDLKE-KKVQKSIPVFDK-P---------------NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK 382 (433)
T ss_dssp EETTTTEEEEEETTT-TEEEEEEECSSS-E---------------EEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE
T ss_pred EecCCCEEEEEECCC-CcEEEEecCCCC-C---------------CeEEEcCCCCEEEEEecCCCccccccccccccceE
Confidence 43 59999999986 777777753322 1 58999999999988877 579
Q ss_pred EEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCE
Q 010933 404 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNL 483 (497)
Q Consensus 404 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~ 483 (497)
|++||+.+++.+ ..+.. ...+.+++|+|+|++
T Consensus 383 v~~~d~~~~~~~-~~~~~-----------------------------------------------~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 383 VYVIDTTTDTVK-EFWEA-----------------------------------------------GNQPTGLDVSPDNRY 414 (433)
T ss_dssp EEEEETTTTEEE-EEEEC-----------------------------------------------SSSEEEEEECTTSCE
T ss_pred EEEEECCCCcEE-EEecC-----------------------------------------------CCCCceEEEcCCCCE
Confidence 999999876332 11110 125678999999999
Q ss_pred EEEEe--CCceEEEe
Q 010933 484 IACAN--GNSLFFHY 496 (497)
Q Consensus 484 la~~~--~~~~~i~~ 496 (497)
|++++ ++.+++|.
T Consensus 415 l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 415 LVISDFLDHQIRVYR 429 (433)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEE
Confidence 88776 56699986
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.1e-29 Score=239.46 Aligned_cols=265 Identities=9% Similarity=-0.028 Sum_probs=172.2
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
|...+....+++++.+||+|+.|++|+|||..++.. .....+..+.+|+ +
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~------------------~~~~~~~~~~gH~------------~ 137 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETI------------------ITQHVLGGKSGHH------------N 137 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEE------------------EEEEEECTTTSCS------------S
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcc------------------ceeeeecccCCCC------------C
Confidence 334444455566778999999999999999987643 0123456789999 9
Q ss_pred ceeEEEEEec------CCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 111 KINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 111 ~i~~l~~~~s------~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
.|++++|+|. .++++|++++.|++|+|||+.++....
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~------------------------------------- 180 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL------------------------------------- 180 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE-------------------------------------
T ss_pred ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee-------------------------------------
Confidence 9999999751 278899999999999999997654221
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeec--------
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDM-------- 254 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~-------- 254 (497)
.+ ..|...+.+++|+|++. .|++| .|++|++||+++..........
T Consensus 181 -----------------------~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 181 -----------------------AG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp -----------------------EE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred -----------------------ee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence 11 57788999999999875 78888 9999999999844322111000
Q ss_pred -----C----CCccCCCCCCeEEEEEe-CCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCc------cc
Q 010933 255 -----K----PSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK------SF 318 (497)
Q Consensus 255 -----~----~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~------~~ 318 (497)
. .....+|...+.++.|. |++ ..|++++.|+.+++||+..++.. ..+..|....... ..
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~~~~ 311 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPNVQG 311 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCSEEE
T ss_pred EecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEcccccc
Confidence 0 01234678889999987 788 99999999999999999877543 2222211111000 00
Q ss_pred cccccccccEEEEee-CC-CEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE
Q 010933 319 FTEIIASISDIKFAN-DG-QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 395 (497)
Q Consensus 319 ~~~~~~~i~~~~~s~-~g-~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 395 (497)
...+ .......++| .+ .++++|+ |+.|++||+.+ ++.+..+..|...+ ++++|+|||++|
T Consensus 312 ~~~~-~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V---------------~svafspdG~~L 374 (393)
T 4gq1_A 312 ISLF-PSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPI---------------VDFCWHQDGSHL 374 (393)
T ss_dssp ECSS-CCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCE---------------EEEEECTTSSEE
T ss_pred cccc-CcceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcE---------------EEEEEcCCCCEE
Confidence 1111 2233344444 33 4556665 59999999987 77777777777654 799999999999
Q ss_pred EEEeCCCcEEEEEc
Q 010933 396 ATGSYSNLLRIFSH 409 (497)
Q Consensus 396 ~s~~~dg~i~vw~~ 409 (497)
|+++.+| +.+|.+
T Consensus 375 A~as~~G-v~lvrL 387 (393)
T 4gq1_A 375 AIATEGS-VLLTRL 387 (393)
T ss_dssp EEEESSE-EEEEEE
T ss_pred EEEeCCC-eEEEEE
Confidence 9999876 555554
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.2e-27 Score=214.99 Aligned_cols=272 Identities=10% Similarity=0.074 Sum_probs=185.1
Q ss_pred ceEEEEEcCCCC---EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc-
Q 010933 34 IVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE- 109 (497)
Q Consensus 34 ~I~~i~~sp~g~---~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~- 109 (497)
.+.++-|-..|- .++++++ ..|++|+..++. +++.+.++..|+.. +..+...
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~--------------------~~~~~~~~~~~~~~---v~~~~~~~ 96 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAW--------------------QWEKLYTWHFAEVP---VLQIVPVP 96 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSS--------------------BEEEEEEEECCSSC---EEEECCCT
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCc--------------------cceeeEEEeccCce---eEEEEEcC
Confidence 345566655443 5677776 589999998863 34556777777621 1111111
Q ss_pred ---------------cceeEEEEEecCC----CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933 110 ---------------EKINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 170 (497)
Q Consensus 110 ---------------~~i~~l~~~~s~~----~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (497)
..|.+|++ +|+ ++.+++++.+ +++|++.++++.......
T Consensus 97 ~~~~~~~~~~~~~~~~~v~sla~--spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g------------------ 154 (356)
T 2w18_A 97 DVYNLVCVALGNLEIREIRALFC--SSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTL------------------ 154 (356)
T ss_dssp TCCSCEEEEECSSSEEEEEEECC--------CCEEEEEEEEE--EEEEEETTTEEEEEESSS------------------
T ss_pred cccceeeeeeccccccceEEEEE--CCCccccccEEEeCCCe--EEEEecCCCcEEEecccC------------------
Confidence 46888888 577 8888888844 888998776644321100
Q ss_pred ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCccCc
Q 010933 171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISD 246 (497)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~ 246 (497)
-++.+++|++... ++.+..+ ..|...+..++|++ +++.|++| .|++|+|||+. .+
T Consensus 155 -----------------~d~~V~~~~~s~d--G~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-TG 213 (356)
T 2w18_A 155 -----------------SDQQVEVMTFAED--GGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-TG 213 (356)
T ss_dssp -----------------TTCEEEEEEECTT--SCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-TC
T ss_pred -----------------CCCcEEEEEECCC--Cceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-CC
Confidence 1678999999653 3444444 68888999999998 78999998 99999999999 56
Q ss_pred eeeEEeecCCCccCCC---CCCeEEEEEeCCCCcEE------------EEEeCCCeEEEEEccCCcccccccceeccccc
Q 010933 247 QCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLL------------AYSSSRGFVRLVDMRQSALCDHSARILRDAAE 311 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l------------~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~ 311 (497)
+++++ +.+| ...+.+++|+|+| .++ ++|+.|++|++||..+++.+ .++.. .
T Consensus 214 k~l~t-------L~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~-~- 279 (356)
T 2w18_A 214 QLLKK-------MHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLY-C- 279 (356)
T ss_dssp CEEEE-------EECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEE-C-
T ss_pred cEEEE-------EcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEe-e-
Confidence 66665 3333 3467888999999 766 56788999999999988654 22211 0
Q ss_pred ccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933 312 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 390 (497)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 390 (497)
...+|...+. ..+.++.++++++ |++|+|||+.+ ++++.++.+|...+. ..++|+|
T Consensus 280 ------~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vv--------------s~vafSP 336 (356)
T 2w18_A 280 ------LPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHW--------------SFVKWSG 336 (356)
T ss_dssp ------CCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCC--------------CEEEECS
T ss_pred ------ccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeE--------------EEEEECC
Confidence 0012333333 3344488899986 59999999997 999999998876431 3589999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 010933 391 DGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 391 ~~~~l~s~~~dg~i~vw~~ 409 (497)
||++|++|+.|++|+|||+
T Consensus 337 DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 337 TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEECCCcEEEecC
Confidence 9999999999999999996
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-27 Score=232.99 Aligned_cols=259 Identities=9% Similarity=0.028 Sum_probs=192.8
Q ss_pred cCCcceEEEEEcCCCCEE-EEeecCCeEEEEEec--CCccccchhhhhhhcccCCCCCCccccccccc--ccCccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDYLK 104 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~ 104 (497)
.|.+.|++++|+|+|++| |+|+.||.|+|||+. +++. +..+. .|.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-----------------------~~~~~~~~~~------- 149 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-----------------------LKLRKRFCFS------- 149 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-----------------------EEEEEEEECS-------
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-----------------------eeeeecccCC-------
Confidence 466789999999999996 899999999999998 5532 44444 455
Q ss_pred ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
..|.+++| +|++.+|++++.|+.|++|++.++.....
T Consensus 150 -----~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~------------------------------------ 186 (450)
T 2vdu_B 150 -----KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKF------------------------------------ 186 (450)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSC------------------------------------
T ss_pred -----CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCcccccc------------------------------------
Confidence 78999999 68999999999999999999987653210
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC---CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 260 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (497)
+... +.+|...|.+++|+|+ +++|++| .|+.|++||++. +.....+ +.
T Consensus 187 --------------------~~~~-~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~------~~ 238 (450)
T 2vdu_B 187 --------------------TQEP-ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKW------LF 238 (450)
T ss_dssp --------------------CCCC-SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEE------CC
T ss_pred --------------------ccee-eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeeee------ec
Confidence 1111 2688999999999999 9999999 999999999984 4444332 56
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccC------------CccccccccccccE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG------------SKSFFTEIIASISD 328 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~ 328 (497)
+|...|.+++|+ ++ .+|++++.|+.|++||+++++.. ..+..+..... ...........+.+
T Consensus 239 ~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 239 GHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp CCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred CCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 899999999999 88 99999999999999999998754 33322110000 00000122457899
Q ss_pred EEEeeCCCEEEEEe--cCeEEEEec--CCCC---ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-
Q 010933 329 IKFANDGQHLLSRD--YMNLKLWDI--RMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY- 400 (497)
Q Consensus 329 ~~~s~~g~~l~~~~--~~~i~lwd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~- 400 (497)
++|+|++++|+++. ++.|++|++ .. + +.+..+..+ ..+ ++++|+|++.++++++.
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v---------------~~~~~~~~~~~v~~~~~~ 375 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP-YNV---------------ISLSAHNDEFQVTLDNKE 375 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS-SCE---------------EEEEEETTEEEEEECCTT
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC-Cce---------------EEEEecCCcEEEEEeccc
Confidence 99999999999885 499999999 43 4 556667766 322 68999996544444443
Q ss_pred -----CCcEEEEEcCCC
Q 010933 401 -----SNLLRIFSHGVG 412 (497)
Q Consensus 401 -----dg~i~vw~~~~~ 412 (497)
+..|.+|.+...
T Consensus 376 ~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 376 SSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CCSSCCCSEEEEEEETT
T ss_pred CCCCCCcceEEEEEEcC
Confidence 556899987643
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.7e-26 Score=220.81 Aligned_cols=251 Identities=12% Similarity=0.135 Sum_probs=192.2
Q ss_pred cCCcceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+...+.+++|+|+|++| ++++.|+.|++||+.+++. +..+..+
T Consensus 29 ~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----------------------~~~~~~~------------ 73 (391)
T 1l0q_A 29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----------------------IATVPAG------------ 73 (391)
T ss_dssp ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------------EEEEECS------------
T ss_pred ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----------------------EEEEECC------------
Confidence 344668999999999987 6777899999999987643 3334333
Q ss_pred ccceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..+.+++| +|++++++.+ +.|+.|++||+.+++....
T Consensus 74 -~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~--------------------------------------- 111 (391)
T 1l0q_A 74 -SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGT--------------------------------------- 111 (391)
T ss_dssp -SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEE---------------------------------------
T ss_pred -CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEE---------------------------------------
Confidence 45899999 6888888655 4679999999987764321
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
+ .+...+.+++|+|+++.+ +++ .++.|++||+. .++.... +.. ...
T Consensus 112 ---------------------~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~-------~~~-~~~ 159 (391)
T 1l0q_A 112 ---------------------V--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINT-------VSV-GRS 159 (391)
T ss_dssp ---------------------E--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEE-------EEC-CSS
T ss_pred ---------------------E--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEE-------Eec-CCC
Confidence 1 223468899999999987 567 89999999998 5555554 222 345
Q ss_pred eEEEEEeCCCCcEE-EEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--
Q 010933 266 ITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 342 (497)
Q Consensus 266 i~~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-- 342 (497)
+.+++|+|++ ..| ++++.++.|++||+++++.. ..+.. ...+.+++|+|++++|++++
T Consensus 160 ~~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~~g~~l~~~~~~ 220 (391)
T 1l0q_A 160 PKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKV--------------EAAPSGIAVNPEGTKAYVTNVD 220 (391)
T ss_dssp EEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSEEEEEEECTTSSEEEEEEEC
T ss_pred cceEEECCCC-CEEEEEeCCCCEEEEEECCCCeEE----EEEec--------------CCCccceEECCCCCEEEEEecC
Confidence 6999999999 665 67788999999999987543 22222 24688999999999888864
Q ss_pred --cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE-EEEeCCCcEEEEEcCCCCcceEEE
Q 010933 343 --YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSAGGITV 419 (497)
Q Consensus 343 --~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~ 419 (497)
++.|++||+.+ ++.+..+..+... .+++|+|++++| ++++.|+.|++||+.+++. ...+
T Consensus 221 ~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~-~~~~ 282 (391)
T 1l0q_A 221 KYFNTVSMIDTGT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATNTI-TATM 282 (391)
T ss_dssp SSCCEEEEEETTT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEE
T ss_pred cCCCcEEEEECCC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCCcE-EEEE
Confidence 49999999986 7788888776543 589999999987 5778899999999998744 4677
Q ss_pred eccCcce
Q 010933 420 EAGKNEN 426 (497)
Q Consensus 420 ~~~~~~v 426 (497)
..|..+.
T Consensus 283 ~~~~~~~ 289 (391)
T 1l0q_A 283 AVGKNPY 289 (391)
T ss_dssp ECSSSEE
T ss_pred ECCcCCC
Confidence 7776653
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6e-28 Score=226.45 Aligned_cols=262 Identities=10% Similarity=0.038 Sum_probs=181.5
Q ss_pred CCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCC
Q 010933 121 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 200 (497)
Q Consensus 121 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (497)
+++.++++|+.||.|++||+.+++.....
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~--------------------------------------------------- 74 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTI--------------------------------------------------- 74 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEE---------------------------------------------------
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEE---------------------------------------------------
Confidence 56789999999999999999887643211
Q ss_pred ccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCC-----ccCCCCCCeEEEEEeC-
Q 010933 201 VHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-----NMDDLTEVITSAEFHP- 273 (497)
Q Consensus 201 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~- 273 (497)
. ...|.++.++|+ ++++ .|+.|++|+... . ...++.+.. ...+|...|.+++|+|
T Consensus 75 ----------~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 75 ----------T--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-Q--ITILDSKTNKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp ----------E--EECCCTTCCCCS---EEEECSTTEEEEEETTT-E--EEEEETTTCCEEEEEECCCSSCEEEEECCC-
T ss_pred ----------e--cCCceeeeeCCc---eEEecCCCeEEEEEccC-c--eEEeecCCcceeEEeecCCCCCEEEEEcCCC
Confidence 1 234556667777 7777 999999998762 1 111111110 0235668999999999
Q ss_pred -CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEec
Q 010933 274 -IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI 351 (497)
Q Consensus 274 -~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~ 351 (497)
++ .+|++++.||.|++||+++++.. ..... .|...+.+++|+|+|.+|++|+ |+.|++||+
T Consensus 137 ~~~-~~l~s~s~dg~i~~wd~~~~~~~----~~~~~------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 137 VNT-EYFIWADNRGTIGFQSYEDDSQY----IVHSA------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp --C-CEEEEEETTCCEEEEESSSSCEE----EEECC------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred CCC-CEEEEEeCCCcEEEEECCCCcEE----EEEec------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 98 99999999999999999987643 22222 1235699999999999999985 599999999
Q ss_pred CCCCcee-eeeee-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc--eEEEeccCccee
Q 010933 352 RMDSTPV-ATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG--GITVEAGKNENR 427 (497)
Q Consensus 352 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~--~~~~~~~~~~v~ 427 (497)
++ ++.+ ..+.. |...+ ++++|+|++.+|++++ |+.|++||+++++.. ...+..|..++.
T Consensus 200 ~~-~~~~~~~~~~~h~~~v---------------~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (343)
T 3lrv_A 200 SS-PDQASSRFPVDEEAKI---------------KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG 262 (343)
T ss_dssp SC-TTSCCEECCCCTTSCE---------------EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred CC-CCCCccEEeccCCCCE---------------EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccccccc
Confidence 97 6655 77777 77654 7999999999999999 459999999987543 122223445555
Q ss_pred --eeEeecCCCcccccccceeEeec-cCc-eecCCCCCcccccccCCCeEEEEEec---CCCEEEEEeCC-ceEE
Q 010933 428 --KPILQAAPRARRSSLSNLTRGLY-RQA-HENSSSGHHELSYNLSSKLLHLAWHP---TTNLIACANGN-SLFF 494 (497)
Q Consensus 428 --~~~~~~~~~~~~~~~~~l~~~~~-d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p---~~~~la~~~~~-~~~i 494 (497)
.++|+| ++++ |++++. ++. ++|........... .++..+.|+| +...|++++.+ .+.+
T Consensus 263 ~~~~~~~~--~g~~-----l~~~s~~d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 263 TVTYDIDD--SGKN-----MIAYSNESNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp CEEEEECT--TSSE-----EEEEETTTTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred ceEEEECC--CCCE-----EEEecCCCCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEecCCceEE
Confidence 488888 6666 888887 777 99933211111111 4666778887 77777776644 3444
No 123
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=2.1e-26 Score=238.92 Aligned_cols=326 Identities=9% Similarity=0.064 Sum_probs=223.9
Q ss_pred CcceEEEEEcCCCCEEEEeec-CC-----eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCc-------
Q 010933 32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP------- 98 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------- 98 (497)
...|.+++|||||++||+++. |+ .|++||+.+++... +.....+.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---------------------~~~~~~~~~~~~~~~~ 94 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---------------------LVDSKVVLPGTETLSD 94 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---------------------EECGGGTC--------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---------------------ccchhhcccccccccc
Confidence 457999999999999999998 88 99999998875411 111111100
Q ss_pred ---ccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCch---heeccccCCCCCccccccccccccCcccc
Q 010933 99 ---EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAEKNFMNE 172 (497)
Q Consensus 99 ---~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (497)
+......+.....|.+++| +|||++|++++. +.|.+||+.++ ....
T Consensus 95 ~~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~------------------------- 146 (741)
T 2ecf_A 95 EEKARRERQRIAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ------------------------- 146 (741)
T ss_dssp ------------CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------------
T ss_pred hhhhhhhhhhhccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------------
Confidence 0000000000024788999 799999999987 89999999876 4222
Q ss_pred CCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEe
Q 010933 173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIV 252 (497)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~ 252 (497)
+..|...+..++|+|||+.|+++.++.|++||+. +++...+
T Consensus 147 -------------------------------------l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~-~g~~~~~- 187 (741)
T 2ecf_A 147 -------------------------------------LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA-SGRQMQL- 187 (741)
T ss_dssp -------------------------------------CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETT-TTEEEEC-
T ss_pred -------------------------------------cccCCcccccccCCCCCCEEEEEeCCcEEEEecC-CCCEEEe-
Confidence 1466678999999999999999866799999998 4554443
Q ss_pred ecCCCccCCCCC----------------CeEEEEEeCCCCcEEEEEeCCC------------------------------
Q 010933 253 DMKPSNMDDLTE----------------VITSAEFHPIYCNLLAYSSSRG------------------------------ 286 (497)
Q Consensus 253 ~~~~~~~~~~~~----------------~i~~~~~~~~~~~~l~~~~~dg------------------------------ 286 (497)
...+.. .+.+++|+|+| +.|++++.|+
T Consensus 188 ------~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 188 ------TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp ------CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred ------ccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 112222 14789999999 8888887765
Q ss_pred ---eEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe------cCeEEEEecCCCCc
Q 010933 287 ---FVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------YMNLKLWDIRMDST 356 (497)
Q Consensus 287 ---~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~~~i~lwd~~~~~~ 356 (497)
.|++||+.+ ++.. ..... ..|...+..++| |||++|+++. +..|++||+.+ ++
T Consensus 261 ~~~~l~~~d~~~~~~~~----~~~~~-----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~ 323 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQ----WIDLG-----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQ 323 (741)
T ss_dssp CEEEEEEECSSTTCCCE----EECCC-----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CC
T ss_pred CeeEEEEEECCCCCceE----EecCC-----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-Cc
Confidence 788889887 6532 11110 123467899999 9999998752 26899999986 67
Q ss_pred eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeee-EeecCC
Q 010933 357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-ILQAAP 435 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~-~~~~~~ 435 (497)
....+..+.... +..+..++|+|||+++++++.||.++||.++.... ...+..|...+..+ .|++
T Consensus 324 ~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-- 389 (741)
T 2ecf_A 324 QRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-- 389 (741)
T ss_dssp EEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET--
T ss_pred eEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC--
Confidence 666665554210 00013799999999999999999888888763333 57788888888887 4888
Q ss_pred CcccccccceeEeeccC--c-eec--CC-CCCcccccccCCCeEEEEEecCCCEEEEEe
Q 010933 436 RARRSSLSNLTRGLYRQ--A-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTNLIACAN 488 (497)
Q Consensus 436 ~~~~~~~~~l~~~~~d~--~-~iw--~~-~~~~~~~~~~~~~i~~l~~~p~~~~la~~~ 488 (497)
+++. .+++++.++ . ++| .. +.....+.. ...+..++|+|||+.|+...
T Consensus 390 dg~~----l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 390 KAGL----AYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSW 443 (741)
T ss_dssp TTTE----EEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEE
T ss_pred CCCE----EEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEe
Confidence 5544 145555554 4 889 22 332333333 66788999999999988765
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3.2e-26 Score=218.87 Aligned_cols=259 Identities=10% Similarity=0.112 Sum_probs=189.3
Q ss_pred CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCC
Q 010933 45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 124 (497)
Q Consensus 45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~ 124 (497)
.++++++.|+.|++||+.+++. +..+..|. .+.+++| +|+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-----------------------~~~~~~~~-------------~~~~~~~--s~dg~ 44 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-----------------------TATIPVGS-------------NPMGAVI--SPDGT 44 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-----------------------EEEEECSS-------------SEEEEEE--CTTSS
T ss_pred EEEEEcCCCCEEEEEECCCCeE-----------------------EEEeecCC-------------CcceEEE--CCCCC
Confidence 4678899999999999987643 55566664 4899999 68888
Q ss_pred EE-EEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccc
Q 010933 125 MF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 203 (497)
Q Consensus 125 ~l-~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (497)
++ ++++.|+.|++||+.+++....
T Consensus 45 ~l~~~~~~d~~i~v~d~~~~~~~~~------------------------------------------------------- 69 (391)
T 1l0q_A 45 KVYVANAHSNDVSIIDTATNNVIAT------------------------------------------------------- 69 (391)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEE-------------------------------------------------------
T ss_pred EEEEECCCCCeEEEEECCCCeEEEE-------------------------------------------------------
Confidence 77 5667999999999987764321
Q ss_pred eeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEE-E
Q 010933 204 RCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL-A 280 (497)
Q Consensus 204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~ 280 (497)
+ .. ...+.+++|+|+++.|++ + .++.|++||+. .++.... +. +...+.+++|+|++ +.| +
T Consensus 70 -----~-~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~-~~~~~~~-------~~-~~~~~~~~~~s~dg-~~l~~ 132 (391)
T 1l0q_A 70 -----V-PA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGT-------VK-TGKSPLGLALSPDG-KKLYV 132 (391)
T ss_dssp -----E-EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEE-------EE-CSSSEEEEEECTTS-SEEEE
T ss_pred -----E-EC-CCCccceEECCCCCEEEEEECCCCEEEEEECC-CCeEEEE-------Ee-CCCCcceEEECCCC-CEEEE
Confidence 1 22 238999999999998754 5 78999999999 5555544 22 34568999999999 655 7
Q ss_pred EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE-EEe-cCeEEEEecCCCCcee
Q 010933 281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRD-YMNLKLWDIRMDSTPV 358 (497)
Q Consensus 281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~-~~~i~lwd~~~~~~~~ 358 (497)
+++.++.|++||+++++.. ..+.. ...+..++|+|++++++ ++. ++.|++||+++ ++.+
T Consensus 133 ~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~ 193 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVI----NTVSV--------------GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVI 193 (391)
T ss_dssp EETTTTEEEEEETTTTEEE----EEEEC--------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEE
T ss_pred EeCCCCEEEEEECCCCcEE----EEEec--------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CeEE
Confidence 8888999999999987654 33333 13568999999999885 454 49999999986 7777
Q ss_pred eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe---CCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCC
Q 010933 359 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 435 (497)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~---~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 435 (497)
..+..+... .+++|+|++++|++++ .++.|++||+.+++.+ ..+..|.. +..++++|
T Consensus 194 ~~~~~~~~~----------------~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~-~~~~~~s~-- 253 (391)
T 1l0q_A 194 DTVKVEAAP----------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-ARIPVGPD-PAGIAVTP-- 253 (391)
T ss_dssp EEEECSSEE----------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-EEEECCSS-EEEEEECT--
T ss_pred EEEecCCCc----------------cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-EEEecCCC-ccEEEEcc--
Confidence 666544322 5899999999999888 6899999999887443 55555433 45566665
Q ss_pred CcccccccceeEeeccCc-eec
Q 010933 436 RARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 436 ~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+++. .+++++.++. ++|
T Consensus 254 dg~~----l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 254 DGKK----VYVALSFXNTVSVI 271 (391)
T ss_dssp TSSE----EEEEETTTTEEEEE
T ss_pred CCCE----EEEEcCCCCEEEEE
Confidence 3333 1244455555 555
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.4e-25 Score=221.89 Aligned_cols=320 Identities=8% Similarity=0.052 Sum_probs=231.0
Q ss_pred EEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEE
Q 010933 39 EFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 118 (497)
Q Consensus 39 ~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~ 118 (497)
+|+|++.++++++.|++|.+||..+++. +.++..+. . +..++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-----------------------~~~i~~g~------------~-~~~v~~- 186 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTGY------------A-VHISRM- 186 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECST------------T-EEEEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE-----------------------EEEEecCc------------c-cceEEE-
Confidence 4899999999999999999999988743 55555332 3 788999
Q ss_pred ecCCCCEEEEEeCCccEEEeec--CchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEe
Q 010933 119 AAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN 196 (497)
Q Consensus 119 ~s~~~~~l~s~s~d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (497)
+|++++|++++.|+.|++||+ .+++..
T Consensus 187 -spdg~~l~v~~~d~~V~v~D~~~~t~~~~-------------------------------------------------- 215 (543)
T 1nir_A 187 -SASGRYLLVIGRDARIDMIDLWAKEPTKV-------------------------------------------------- 215 (543)
T ss_dssp -CTTSCEEEEEETTSEEEEEETTSSSCEEE--------------------------------------------------
T ss_pred -CCCCCEEEEECCCCeEEEEECcCCCCcEE--------------------------------------------------
Confidence 789999999999999999999 554422
Q ss_pred ecCCccceeeeeeccCCCCCeeEEEeCC----CCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccC---CC-CCCe
Q 010933 197 VGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DL-TEVI 266 (497)
Q Consensus 197 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~-~~~i 266 (497)
..+ . +...+..++|+| +|++++++ .+++|.+||.. ..+.++++........ .| ...+
T Consensus 216 ----------~~i-~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 216 ----------AEI-K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp ----------EEE-E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCE
T ss_pred ----------EEE-e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCccccccCCce
Confidence 222 2 334578999999 99999887 58999999998 5666666543211111 12 3378
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e-cC
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YM 344 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~~ 344 (497)
.++.++|++..++++...++.|.+||+.+.+.+. ...+. +...+..+.|+|+|++++++ . ++
T Consensus 283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~--------------~~~~~~~~~~spdg~~l~va~~~~~ 346 (543)
T 1nir_A 283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIG--------------AAPFLHDGGWDSSHRYFMTAANNSN 346 (543)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEE--------------CCSSCCCEEECTTSCEEEEEEGGGT
T ss_pred EEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEec--------------cCcCccCceECCCCCEEEEEecCCC
Confidence 9999999885677788889999999998765331 01111 12457889999999987765 3 49
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEE-EcCC-CCEEEEEe-CCCcEEEEEcCCC------Ccc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS-VSGD-GLHFATGS-YSNLLRIFSHGVG------SAG 415 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~-~~~l~s~~-~dg~i~vw~~~~~------~~~ 415 (497)
.|.+||+.+ ++++..+.....+-+. .... ++|+ +..++++. .|++|.+||+.+. -.+
T Consensus 347 ~v~v~D~~t-g~l~~~i~~g~~ph~g-------------~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~ 412 (543)
T 1nir_A 347 KVAVIDSKD-RRLSALVDVGKTPHPG-------------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 412 (543)
T ss_dssp EEEEEETTT-TEEEEEEECSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred eEEEEECCC-CeEEEeeccCCCCCCC-------------CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE
Confidence 999999997 8888887752211000 1222 4677 66677775 5899999999882 244
Q ss_pred eEEEeccCcceeeeEeecCCCcccccccceeEee-------ccCc-eec--CCCCCcccc---------cccCCCeEEEE
Q 010933 416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-------YRQA-HEN--SSSGHHELS---------YNLSSKLLHLA 476 (497)
Q Consensus 416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-------~d~~-~iw--~~~~~~~~~---------~~~~~~i~~l~ 476 (497)
..++.+|...+..++++| +++. |.+++ .++. .+| .+.+..... ..+.+.+.+++
T Consensus 413 v~~l~~~g~~~~~v~~~p--dg~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 485 (543)
T 1nir_A 413 VAELQGQGGGSLFIKTHP--KSSH-----LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 485 (543)
T ss_dssp EEEEECSCSCCCCEECCT--TCCE-----EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred EEEEEcCCCCceEEEcCC--CCCc-----EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence 588999998889999999 6766 77776 2445 888 223322122 24577899999
Q ss_pred EecCCCEEEEEe------CCceEEEe
Q 010933 477 WHPTTNLIACAN------GNSLFFHY 496 (497)
Q Consensus 477 ~~p~~~~la~~~------~~~~~i~~ 496 (497)
|+|+|+.|.++. ++.|.||.
T Consensus 486 ~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 486 YNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp ECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 999999988763 36688886
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.1e-26 Score=223.08 Aligned_cols=302 Identities=12% Similarity=0.094 Sum_probs=214.1
Q ss_pred CcceEEEEEcCCCC-EEEEee----cCC----eEEEEEe--cCCccccchhhhhhhcccCCCCCCcccccccccccCccc
Q 010933 32 VDIVSAIEFDKTGD-YLAVGD----RGG----RVILFET--VGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 100 (497)
Q Consensus 32 ~~~I~~i~~sp~g~-~lasg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 100 (497)
...+...+|++.|. ++++|+ .|| .|+|||+ .+++. .....+.+|.
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~---------------------~~~~~~~~~~--- 117 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV---------------------LAQNSYKVNK--- 117 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE---------------------EEEEEEEECG---
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE---------------------EeeeEEEcCh---
Confidence 35788888988874 666886 467 8999999 77643 1124466776
Q ss_pred ccccccccccceeEEEEEe------------cCCCCEEEEEeCC------ccEEEeecCchheeccccCCCCCccccccc
Q 010933 101 DYLKSLEIEEKINRVRWCA------------APNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENT 162 (497)
Q Consensus 101 ~~~~~~~~~~~i~~l~~~~------------s~~~~~l~s~s~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 162 (497)
..+..+++.+ .+.+..++.++.+ +.|++||+.++....
T Consensus 118 ---------~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~--------------- 173 (415)
T 2hqs_A 118 ---------QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFV--------------- 173 (415)
T ss_dssp ---------GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEE---------------
T ss_pred ---------hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEE---------------
Confidence 3344444321 1125566666543 789999986433211
Q ss_pred cccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCC---eEE
Q 010933 163 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL---RIN 238 (497)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~---~i~ 238 (497)
+.+|...+.+++|+|+|+.|+++ .++ .|+
T Consensus 174 -----------------------------------------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~ 206 (415)
T 2hqs_A 174 -----------------------------------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV 206 (415)
T ss_dssp -----------------------------------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred -----------------------------------------------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEE
Confidence 15678899999999999999987 664 999
Q ss_pred EEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE-EEeCCC--eEEEEEccCCcccccccceecccccccCC
Q 010933 239 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGS 315 (497)
Q Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 315 (497)
+||+. .++... +..|...+.+++|+|+| +.|+ +++.++ .|++||+++++. ..+..
T Consensus 207 ~~d~~-tg~~~~--------l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~------- 264 (415)
T 2hqs_A 207 IQTLA-NGAVRQ--------VASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQI-----RQVTD------- 264 (415)
T ss_dssp EEETT-TCCEEE--------EECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCE-----EECCC-------
T ss_pred EEECC-CCcEEE--------eecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCE-----EeCcC-------
Confidence 99998 444443 34577789999999999 7676 666655 499999987653 22222
Q ss_pred ccccccccccccEEEEeeCCCEEEEEec--C--eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933 316 KSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 391 (497)
Q Consensus 316 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 391 (497)
|...+.+++|+|||++|+++++ + .|++||+.. ++ ...+..+...+ ..++|+||
T Consensus 265 ------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~~~~~---------------~~~~~spd 321 (415)
T 2hqs_A 265 ------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQRITWEGSQN---------------QDADVSSD 321 (415)
T ss_dssp ------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEECCCSSSEE---------------EEEEECTT
T ss_pred ------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEEEecCCCcc---------------cCeEECCC
Confidence 3467899999999999888753 3 688888875 43 33343333322 58999999
Q ss_pred CCEEEEEeCC---CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc----eec-CCCCCcc
Q 010933 392 GLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA----HEN-SSSGHHE 463 (497)
Q Consensus 392 ~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~----~iw-~~~~~~~ 463 (497)
|++|++++.+ ..|++||+.+++. ..+..+. .+..++|+| +++. +++++.++. .+| ..++...
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~sp--dg~~-----l~~~s~~~~~~~l~~~d~~g~~~~ 391 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAP--NGTM-----VIYSSSQGMGSVLNLVSTDGRFKA 391 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECT--TSSE-----EEEEEEETTEEEEEEEETTSCCEE
T ss_pred CCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcC--CCCE-----EEEEEcCCCccEEEEEECCCCcEE
Confidence 9999988864 5899999998744 4555554 889999998 6666 777777663 555 3455566
Q ss_pred cccccCCCeEEEEEecCCCE
Q 010933 464 LSYNLSSKLLHLAWHPTTNL 483 (497)
Q Consensus 464 ~~~~~~~~i~~l~~~p~~~~ 483 (497)
.+..+...|.+++|+|...+
T Consensus 392 ~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 392 RLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp ECCCSSSEEEEEEECCCCCC
T ss_pred EeeCCCCCCcCCcccccccc
Confidence 67788999999999997643
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.6e-25 Score=217.14 Aligned_cols=239 Identities=9% Similarity=0.067 Sum_probs=188.2
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|...|.+++|+|+|+++++++.|+.|++||+.+++. ...+..|.
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~-----------------------~~~~~~~~------------ 211 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY-----------------------KATVDLTG------------ 211 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECSS------------
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-----------------------EEEEcCCC------------
Confidence 5778999999999999999999999999999987643 55666777
Q ss_pred cceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..+.+++| +|+++.++++ +.|+.|++||+.+++....
T Consensus 212 ~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~---------------------------------------- 249 (433)
T 3bws_A 212 KWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRK---------------------------------------- 249 (433)
T ss_dssp SSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEE----------------------------------------
T ss_pred CCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEE----------------------------------------
Confidence 78999999 5788888655 4899999999987663321
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--------CCeEEEEeCccCceeeEEeecCCCcc
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--------d~~i~iwd~~~~~~~~~~~~~~~~~~ 259 (497)
+ .. ...+.+++|+|+++.++++ . |+.|++||+. .++....
T Consensus 250 --------------------~-~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~-------- 298 (433)
T 3bws_A 250 --------------------T-DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDT-------- 298 (433)
T ss_dssp --------------------C-CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEE--------
T ss_pred --------------------e-cC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEee--------
Confidence 1 22 3358899999999998886 3 7899999998 4555443
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
..|...+.+++|+|++..++++++.|+.|++||+++++.. ..+.. ...+.+++|+|+|++++
T Consensus 299 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~ 360 (433)
T 3bws_A 299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIPV--------------FDKPNTIALSPDGKYLY 360 (433)
T ss_dssp EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEEC--------------SSSEEEEEECTTSSEEE
T ss_pred ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEecC--------------CCCCCeEEEcCCCCEEE
Confidence 2355688999999999345567788999999999987544 22222 35688999999999888
Q ss_pred EEec----------------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CC
Q 010933 340 SRDY----------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SN 402 (497)
Q Consensus 340 ~~~~----------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg 402 (497)
++.. |.|++||+.+ ++.+..+..+... .+++|+|++++|++++. |+
T Consensus 361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~d~ 423 (433)
T 3bws_A 361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP----------------TGLDVSPDNRYLVISDFLDH 423 (433)
T ss_dssp EEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE----------------EEEEECTTSCEEEEEETTTT
T ss_pred EEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCCCC----------------ceEEEcCCCCEEEEEECCCC
Confidence 8643 4999999986 7888877764432 68999999999998875 99
Q ss_pred cEEEEEcCC
Q 010933 403 LLRIFSHGV 411 (497)
Q Consensus 403 ~i~vw~~~~ 411 (497)
.|++|+++.
T Consensus 424 ~i~v~~~~~ 432 (433)
T 3bws_A 424 QIRVYRRDG 432 (433)
T ss_dssp EEEEEEETT
T ss_pred eEEEEEecC
Confidence 999999863
No 128
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1e-24 Score=233.88 Aligned_cols=365 Identities=9% Similarity=0.043 Sum_probs=245.8
Q ss_pred cccCCcceEEEEEcCCCCEEEEeecC------CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccc
Q 010933 28 ELQDVDIVSAIEFDKTGDYLAVGDRG------GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 101 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g~~lasg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 101 (497)
...|...|.+++|||||++||+++.+ ..|++|++.+++ ...+..|.
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~------------------------~~~lt~~~---- 99 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE------------------------IKRITYFS---- 99 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE------------------------EEECCCCC----
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC------------------------eEEcccCC----
Confidence 34688999999999999999988654 379999987764 34566676
Q ss_pred cccccccccce-------eEEEEEecCCCCEEEEEeCC------ccEEEeecCchheeccccCCCCCccccccccc----
Q 010933 102 YLKSLEIEEKI-------NRVRWCAAPNGSMFILSTND------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL---- 164 (497)
Q Consensus 102 ~~~~~~~~~~i-------~~l~~~~s~~~~~l~s~s~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---- 164 (497)
..+ ..++| +|||+.+++++.+ ..|.+|++.++....+...... .+.+.+
T Consensus 100 --------~~~~~~~~~~~~~~~--SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~----~~~~spG~l~ 165 (1045)
T 1k32_A 100 --------GKSTGRRMFTDVAGF--DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT----HILFADGRRV 165 (1045)
T ss_dssp --------EEEETTEECSEEEEE--CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS----EEEEETTEEE
T ss_pred --------CcccccccccccccC--CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcc----eeeeCCCEEE
Confidence 666 89999 6898877777654 3577778877765443322110 001000
Q ss_pred ------------------------------------cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeee
Q 010933 165 ------------------------------------AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKV 208 (497)
Q Consensus 165 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (497)
+.+.+....+.++ .+++.+. .++..++|.++... ...+.
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~--~dg~~~l~~~~~~g--~~~~~ 240 (1045)
T 1k32_A 166 IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITD--IDGFGQIYSTDLDG--KDLRK 240 (1045)
T ss_dssp EEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEEC--TTSSCEEEEEETTS--CSCEE
T ss_pred EeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEe--ccCceEEEEEeCCC--CcceE
Confidence 0001111111112 2222222 24677888876422 12222
Q ss_pred eccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCC----CccCCCCCCeEEEEEe-CCCCcEEEEEe
Q 010933 209 YPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP----SNMDDLTEVITSAEFH-PIYCNLLAYSS 283 (497)
Q Consensus 209 ~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~-~~~~~~l~~~~ 283 (497)
+ ..|. .+...+|+|+|+.|+++.++.|++|+.. ..... .+.... .....|...+.+++|+ |+| +.|++++
T Consensus 241 l-~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~-~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~ 315 (1045)
T 1k32_A 241 H-TSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPD-TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS 315 (1045)
T ss_dssp C-CCCC-SSCEEEEEESSSCEEEEETTEEEEECTT-TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE
T ss_pred e-cCCC-CcceeeEcCCCCEEEEEeCCEEEEecCC-ceEee-eeccCcccccccccccccccceeeecCCCC-CEEEEEE
Confidence 2 3444 4667899999999999888999999985 43333 211000 0011245578999999 999 8888877
Q ss_pred CCCeEEEEEccCCcccccccceecccccccCCccccccccc-cccEEEEeeCCCEEEEEec-CeEE-EEecCCCCceeee
Q 010933 284 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSRDY-MNLK-LWDIRMDSTPVAT 360 (497)
Q Consensus 284 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~-~~i~-lwd~~~~~~~~~~ 360 (497)
++.|.+|++..++.. .+.. |.. .+..++|+ +|+.|+.+++ +.+. +||+.. ++. ..
T Consensus 316 -~~~i~~~~~~~~~~~-----~~~~-------------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~-~~~-~~ 373 (1045)
T 1k32_A 316 -RGQAFIQDVSGTYVL-----KVPE-------------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT-GKA-EK 373 (1045)
T ss_dssp -TTEEEEECTTSSBEE-----ECSC-------------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT-CCE-EE
T ss_pred -cCEEEEEcCCCCceE-----EccC-------------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC-CCc-eE
Confidence 889999999876432 1221 224 68899999 9999998765 7788 889874 443 33
Q ss_pred eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccc
Q 010933 361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 440 (497)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 440 (497)
+..+...+ ..++|+|||++|++++.++.|++||+.+++. ...+.+|...+..++|+| +++.
T Consensus 374 l~~~~~~~---------------~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~Sp--DG~~- 434 (1045)
T 1k32_A 374 FEENLGNV---------------FAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISD--NSRF- 434 (1045)
T ss_dssp CCCCCCSE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECT--TSCE-
T ss_pred ecCCccce---------------eeeEECCCCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECC--CCCe-
Confidence 43443322 5899999999999999999999999998754 356668999999999999 7776
Q ss_pred cccceeEeeccC----------c-eecCC-CCCcccccccCCCeEEEEEecCCCEEEEEeC
Q 010933 441 SLSNLTRGLYRQ----------A-HENSS-SGHHELSYNLSSKLLHLAWHPTTNLIACANG 489 (497)
Q Consensus 441 ~~~~l~~~~~d~----------~-~iw~~-~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~ 489 (497)
+++++.++ . .+|.. ......+..+...+..++|+|||+.|++++.
T Consensus 435 ----la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 435 ----IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp ----EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred ----EEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 77776644 4 77832 2334556677788899999999999998885
No 129
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=2.2e-24 Score=202.84 Aligned_cols=270 Identities=10% Similarity=0.052 Sum_probs=191.7
Q ss_pred cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 169 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (497)
+.++.+|. ..|++++| +||+++|++|+.|+ +++|++..++...
T Consensus 12 ~~~~~~h~------------~~V~~v~f--s~dg~~la~g~~~~-~~iw~~~~~~~~~---------------------- 54 (355)
T 3vu4_A 12 IVPENHVS------------NPVTDYEF--NQDQSCLILSTLKS-FEIYNVHPVAHIM---------------------- 54 (355)
T ss_dssp -------C------------CCCCEEEE--CTTSSEEEEECSSE-EEEEEETTEEEEE----------------------
T ss_pred ccccccCC------------CceEEEEE--CCCCCEEEEEcCCE-EEEEecCCcceee----------------------
Confidence 44567788 88999999 78999999888775 7899987654221
Q ss_pred cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCce
Q 010933 170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQ 247 (497)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~ 247 (497)
..+...+..+++.++++.++ +| .|+.|++||.. .++
T Consensus 55 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~-~~~ 92 (355)
T 3vu4_A 55 -----------------------------------------SQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV-KKQ 92 (355)
T ss_dssp -----------------------------------------EEECSCCCEEEECTTSSEEEEECSSTTEEEEEETT-TTE
T ss_pred -----------------------------------------eeecCCeEEEEEcCCCCEEEEEECCccEEEEEECC-CCc
Confidence 11112467788888888774 46 88999999998 555
Q ss_pred eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC-cccccccceecccccccCCccccccccccc
Q 010933 248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASI 326 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 326 (497)
.... +. +...|.+++++++. ++++ .|+.|++||+.++ +.+ ..+.. ..
T Consensus 93 ~~~~-------~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~----~~~~~----------------~~ 140 (355)
T 3vu4_A 93 DVSR-------IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRI----TDDIR----------------FG 140 (355)
T ss_dssp EEEE-------EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBS----SCCEE----------------EE
T ss_pred EEEE-------EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceee----EEecc----------------CC
Confidence 5544 22 56789999999864 3333 4789999999987 433 22211 23
Q ss_pred cEEEEeeCCCEEEEE---ecCeEEEEecCCCCc---------------e-eeeeeecccccccccccCCCCCccceeEEE
Q 010933 327 SDIKFANDGQHLLSR---DYMNLKLWDIRMDST---------------P-VATFKIHEHLRPKLCDLYNNDSIFDKFECS 387 (497)
Q Consensus 327 ~~~~~s~~g~~l~~~---~~~~i~lwd~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (497)
..+++++ .+++++ .+|.|++||+.. ++ + +..+.+|...+ ++++
T Consensus 141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v---------------~~~~ 202 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKAILGKGVLIKAHTNPI---------------KMVR 202 (355)
T ss_dssp EEEEEET--TEEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCE---------------EEEE
T ss_pred ceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccccCcccEEEEccCCce---------------EEEE
Confidence 3456666 666664 349999999986 33 2 67788888765 7999
Q ss_pred EcCCCCEEEEEeCCCc-EEEEEcCCCCcceEEEe-c-cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCc-
Q 010933 388 VSGDGLHFATGSYSNL-LRIFSHGVGSAGGITVE-A-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH- 462 (497)
Q Consensus 388 ~s~~~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~- 462 (497)
|+|++++|++|+.|++ |++||+.+++.+ ..+. + |..+|++++|+| ++.+ |++++.|+. ++|......
T Consensus 203 ~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s~--~~~~-----l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 203 LNRKSDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWST--DGSK-----LAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp ECTTSSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEECT--TSCE-----EEEEETTCEEEEEESSCCSC
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEECC--CCCE-----EEEEECCCEEEEEEccCCCC
Confidence 9999999999999998 999999998655 6776 5 999999999999 6766 999999999 999332110
Q ss_pred ---ccc---------------------cccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933 463 ---ELS---------------------YNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 496 (497)
Q Consensus 463 ---~~~---------------------~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~ 496 (497)
..+ .....+...++|+|+++.|++++.|+ +++|.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 275 NKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp CCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 000 01122346799999999999998554 66664
No 130
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=6.3e-25 Score=227.16 Aligned_cols=322 Identities=11% Similarity=0.064 Sum_probs=211.2
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 113 (497)
.+.+++|+|||+++++ +.||.|++||+.+++. ...+.+|... ...|.
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-----------------------~~~~~~~~~~---------~~~v~ 64 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-----------------------TVLIEGKKIE---------SLRAI 64 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-----------------------EEEECTTTTT---------TTTCS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-----------------------EEEecccccc---------ccccc
Confidence 4678999999998876 6899999999988753 3334445400 01489
Q ss_pred EEEEEecCCCCEEEEEeCC---------ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 114 RVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
+++| +|||++|++++.+ +.+.+||+.+++...+.
T Consensus 65 ~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~----------------------------------- 107 (723)
T 1xfd_A 65 RYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD----------------------------------- 107 (723)
T ss_dssp EEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC-----------------------------------
T ss_pred eEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEecc-----------------------------------
Confidence 9999 7899999999765 67778888776632211
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
. ..+|...+..++|+|||+.|+++.++.|++||+. +++...+. ..+..
T Consensus 108 -----------------------~-~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~g~~~~~~-------~~~~~ 155 (723)
T 1xfd_A 108 -----------------------P-PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVV-------STGKE 155 (723)
T ss_dssp -----------------------C-TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEE-------CCCBT
T ss_pred -----------------------C-CccccccccccEECCCCCEEEEEECCeEEEEECC-CCceEEEe-------cCCCC
Confidence 0 1345556888999999999999966899999998 45444432 12222
Q ss_pred ------------------CeEEEEEeCCCCcEEEEEeCCC----------------------------------eEEEEE
Q 010933 265 ------------------VITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVD 292 (497)
Q Consensus 265 ------------------~i~~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d 292 (497)
.+.+++|+|+| +.|++++.|+ .|++||
T Consensus 156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d 234 (723)
T 1xfd_A 156 GVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG 234 (723)
T ss_dssp TTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred CceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEE
Confidence 33789999999 8888887653 788888
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----c-CeEEEEecCCCCceeeeeeec-cc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKIH-EH 366 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~-~~i~lwd~~~~~~~~~~~~~~-~~ 366 (497)
+.+++.. ..+..+. .+..+...+..++|+|||+++++.. + ..|++||+.+ ++....+..+ ..
T Consensus 235 ~~~~~~~----~~l~~~~-------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~ 302 (723)
T 1xfd_A 235 LNGPTHD----LEMMPPD-------DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEA 302 (723)
T ss_dssp SSSSCCC----EECCCCC-------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSS
T ss_pred CCCCcee----EEeeCCc-------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCC
Confidence 8776532 2222100 0112346789999999999887653 1 5899999986 6665555433 22
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEE--EeCCC------cEEEEE-cCCCCc-ceEEEeccCcceee-eEeecCC
Q 010933 367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN------LLRIFS-HGVGSA-GGITVEAGKNENRK-PILQAAP 435 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--~~~dg------~i~vw~-~~~~~~-~~~~~~~~~~~v~~-~~~~~~~ 435 (497)
.+. .. ...++|+|||+.|+. +..++ .|++|| ...+.. ....+..+...+.. ++|+|
T Consensus 303 ~~~---------~~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-- 369 (723)
T 1xfd_A 303 WLH---------RQ--NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-- 369 (723)
T ss_dssp CCC---------CC--CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET--
T ss_pred EEe---------cc--CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC--
Confidence 210 00 026899999998775 45677 567777 344320 02344433334444 68888
Q ss_pred CcccccccceeEeecc---Cc-eecC--CCC--Ccccccc---cCCCeEEEEEecCCCEEEEEe
Q 010933 436 RARRSSLSNLTRGLYR---QA-HENS--SSG--HHELSYN---LSSKLLHLAWHPTTNLIACAN 488 (497)
Q Consensus 436 ~~~~~~~~~l~~~~~d---~~-~iw~--~~~--~~~~~~~---~~~~i~~l~~~p~~~~la~~~ 488 (497)
+++. ++..+.+ +. ++|. ... ....+.. +...+..++|+|||++|+...
T Consensus 370 dg~~-----l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 370 KGNK-----IYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp TTTE-----EEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred CCCE-----EEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 6665 6555444 44 8892 222 2222222 566788999999999988765
No 131
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1e-24 Score=196.07 Aligned_cols=194 Identities=9% Similarity=0.019 Sum_probs=141.5
Q ss_pred CCCCCeeEEEeCCCCCEEEEE---cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC---CCCcEEEEEeCC
Q 010933 212 AHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSR 285 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~d 285 (497)
+|...|+++ ++++++.++ .|+.|++|++...++.... +..|...+..++|+| ++ ..|++++.|
T Consensus 134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s-------~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D 202 (356)
T 2w18_A 134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN-------QFLMPPEETILTFAEVQGMQ-EALLGTTIM 202 (356)
T ss_dssp EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEE-------EEECCCSSCEEEEEEEETST-TEEEEEETT
T ss_pred CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeee-------eccCCCceeeEEeeccCCCC-ceEEEecCC
Confidence 344344443 456666663 4999999999655665543 557888888889988 67 899999999
Q ss_pred CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE------------EEe-cCeEEEEecC
Q 010933 286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL------------SRD-YMNLKLWDIR 352 (497)
Q Consensus 286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~------------~~~-~~~i~lwd~~ 352 (497)
++|+|||+++++.+ +.+..|. .+...+.+++|+|+|++++ +|+ |++|++||..
T Consensus 203 ~TIkIWDl~TGk~l----~tL~g~~----------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~ 268 (356)
T 2w18_A 203 NNIVIWNLKTGQLL----KKMHIDD----------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK 268 (356)
T ss_dssp SEEEEEETTTCCEE----EEEECCC-------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred CcEEEEECCCCcEE----EEEcCCC----------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence 99999999999766 5554321 1124678889999998874 443 4899999998
Q ss_pred CCCceeeeee-----ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 353 MDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 353 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+ ++.+..+. +|... -+..+.++.++++|+.|++|+|||+.+++.+ .++.+|...+.
T Consensus 269 t-gk~l~v~~~~~p~Gh~~~-----------------~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l-~tL~gH~~~vv 329 (356)
T 2w18_A 269 T-TLSVGVMLYCLPPGQAGR-----------------FLEGDVKDHCAAAILTSGTIAIWDLLLGQCT-ALLPPVSDQHW 329 (356)
T ss_dssp T-TEEEEEEEECCCTTCCCC-----------------EEEEEEETTEEEEEETTSCEEEEETTTCSEE-EEECCC--CCC
T ss_pred C-CEEEEEEEeeccCCCcce-----------------eEccccCCCEEEEEcCCCcEEEEECCCCcEE-EEecCCCCCeE
Confidence 6 77766552 33321 1333334889999999999999999998554 88999988766
Q ss_pred e-eEeecCCCcccccccceeEeeccCc-eec
Q 010933 428 K-PILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 428 ~-~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
. ++|+| ++++ |++|+.|+. ++|
T Consensus 330 s~vafSP--DG~~-----LaSGS~D~TIklW 353 (356)
T 2w18_A 330 SFVKWSG--TDSH-----LLAGQKDGNIFVY 353 (356)
T ss_dssp CEEEECS--SSSE-----EEEECTTSCEEEE
T ss_pred EEEEECC--CCCE-----EEEEECCCcEEEe
Confidence 4 89999 7777 999999999 999
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.3e-23 Score=201.81 Aligned_cols=243 Identities=14% Similarity=0.117 Sum_probs=186.4
Q ss_pred CCEEEEeecC------CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEE
Q 010933 44 GDYLAVGDRG------GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 117 (497)
Q Consensus 44 g~~lasg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~ 117 (497)
+..++.++.+ +.|++||+++.. ...+.+|. ..|.+++|
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------------------~~~l~~~~------------~~v~~~~~ 186 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN------------------------QFVVHRSP------------QPLMSPAW 186 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS------------------------CEEEEEES------------SCEEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC------------------------CEEEeCCC------------CcceeeEE
Confidence 6677777765 799999987542 45566787 88999999
Q ss_pred EecCCCCEEEEEeCCc---cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933 118 CAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 194 (497)
Q Consensus 118 ~~s~~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (497)
+|++++|++++.|+ .|++||+.+++...+
T Consensus 187 --Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l---------------------------------------------- 218 (415)
T 2hqs_A 187 --SPDGSKLAYVTFESGRSALVIQTLANGAVRQV---------------------------------------------- 218 (415)
T ss_dssp --CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE----------------------------------------------
T ss_pred --cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe----------------------------------------------
Confidence 78999999999875 999999987763321
Q ss_pred EeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCC--eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 195 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
..|...+.+++|+|+|+.|+ ++ .++ .|++||+. .++... +..|...+.+++
T Consensus 219 ----------------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~-~~~~~~--------l~~~~~~~~~~~ 273 (415)
T 2hqs_A 219 ----------------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQ--------VTDGRSNNTEPT 273 (415)
T ss_dssp ----------------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEEE--------CCCCSSCEEEEE
T ss_pred ----------------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC-CCCEEe--------CcCCCCcccceE
Confidence 45667899999999999888 55 554 59999998 444432 567888999999
Q ss_pred EeCCCCcEEEEEeC-CC--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c---
Q 010933 271 FHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--- 343 (497)
Q Consensus 271 ~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~--- 343 (497)
|+|+| +.|++++. ++ .|.+||+.+++.. .+.. +...+.+++|+|+|++|++++ +
T Consensus 274 ~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-----~l~~-------------~~~~~~~~~~spdG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 274 WFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-----RITW-------------EGSQNQDADVSSDGKFMVMVSSNGGQ 334 (415)
T ss_dssp ECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-----ECCC-------------SSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred ECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-----EEec-------------CCCcccCeEECCCCCEEEEEECcCCc
Confidence 99999 88888776 44 6888898876532 1111 224678999999999998864 2
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC---cEEEEEcCCCCcceEEEe
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~ 420 (497)
..|++||+.+ ++. ..+..+. .+ .+++|+|||++|++++.++ .|++||+..+ ....+.
T Consensus 335 ~~i~~~d~~~-~~~-~~l~~~~-~~---------------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~ 394 (415)
T 2hqs_A 335 QHIAKQDLAT-GGV-QVLSSTF-LD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLP 394 (415)
T ss_dssp EEEEEEETTT-CCE-EECCCSS-SC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECC
T ss_pred eEEEEEECCC-CCE-EEecCCC-Cc---------------CCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEee
Confidence 5899999985 554 3444443 22 5899999999999988877 7999998743 347889
Q ss_pred ccCcceeeeEeecC
Q 010933 421 AGKNENRKPILQAA 434 (497)
Q Consensus 421 ~~~~~v~~~~~~~~ 434 (497)
.|.+.|+.++|+|.
T Consensus 395 ~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 395 ATDGQVKFPAWSPY 408 (415)
T ss_dssp CSSSEEEEEEECCC
T ss_pred CCCCCCcCCccccc
Confidence 99999999999995
No 133
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=2.1e-23 Score=215.11 Aligned_cols=334 Identities=10% Similarity=0.056 Sum_probs=209.2
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEecCCcc--ccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN--HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
.+..+.|+ |+.+++++.|+ | +||+.+++. ..+..... ....+...+ ..+. .....
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~--------------~~~~l~~~~----~~~~-~~~~~ 83 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAAD--------------LNALMPEGC----KFQT-TDAFP 83 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHH--------------HHTTC----------------CC
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhH--------------hhhhccchh----cccc-ccccC
Confidence 34557777 66777777777 8 999988754 21110000 000000000 0000 00045
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
|.+++| +|| +.++.+. ++.|++||+.+++...+
T Consensus 84 v~~~~~--spd-~~~~~~~-~~~i~~~d~~~~~~~~l------------------------------------------- 116 (706)
T 2z3z_A 84 SFRTLD--AGR-GLVVLFT-QGGLVGFDMLARKVTYL------------------------------------------- 116 (706)
T ss_dssp CEEEEE--TTT-TEEEEEE-TTEEEEEETTTTEEEEE-------------------------------------------
T ss_pred ceeEEE--CCC-CeEEEEE-CCEEEEEECCCCceEEc-------------------------------------------
Confidence 899999 678 6666554 59999999987764321
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccC----ceeeEEeecCCCccCCCCC---
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTE--- 264 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~--- 264 (497)
..+...+.+++|+|+|+.|+++.++.|++||+... ++...+ ...+..
T Consensus 117 -------------------~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~-------~~~~~~~~~ 170 (706)
T 2z3z_A 117 -------------------FDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAV-------TIDGTETLV 170 (706)
T ss_dssp -------------------ECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEES-------CSCCBTTEE
T ss_pred -------------------cCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEe-------ccCCCCCeE
Confidence 23455677899999999999998899999999841 444332 111222
Q ss_pred -----------CeEEEEEeCCCCcEEEEEe---------------------------------CCCeEEEEEccCCcccc
Q 010933 265 -----------VITSAEFHPIYCNLLAYSS---------------------------------SRGFVRLVDMRQSALCD 300 (497)
Q Consensus 265 -----------~i~~~~~~~~~~~~l~~~~---------------------------------~dg~i~v~d~~~~~~~~ 300 (497)
.+.+++|+|+| +.|++++ .+..|++||+.+++..
T Consensus 171 ~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~- 248 (706)
T 2z3z_A 171 YGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV- 248 (706)
T ss_dssp ESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-
T ss_pred cccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-
Confidence 25889999999 8899887 4468999999887532
Q ss_pred cccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC-----eEEEEecCCCCceeeeeeeccccccccccc
Q 010933 301 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM-----NLKLWDIRMDSTPVATFKIHEHLRPKLCDL 374 (497)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
..... ..|...+..++|+|||++|+++. ++ .|++||+.+ ++....+.......
T Consensus 249 ---~~~~~-----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~------ 307 (706)
T 2z3z_A 249 ---YLQTG-----------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH------ 307 (706)
T ss_dssp ---ECCCC-----------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS------
T ss_pred ---eeccC-----------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC------
Confidence 11111 12345789999999999888853 33 899999986 53333332211110
Q ss_pred CCCCCccceeEEEEcC--CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceee-eEeecCCCcccccccceeEeecc
Q 010933 375 YNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRARRSSLSNLTRGLYR 451 (497)
Q Consensus 375 ~~~~~~~~~~~~~~s~--~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~~~~~d 451 (497)
.+..+..++|+| ||++|++++.|+.++||.++........+..+...+.. +++++ ++.. .++++..+
T Consensus 308 ----~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp--dg~~----l~~~~~~~ 377 (706)
T 2z3z_A 308 ----YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP--KGTR----LYFESTEA 377 (706)
T ss_dssp ----CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT--TSSE----EEEEESSS
T ss_pred ----eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC--CCCE----EEEEecCC
Confidence 000013689999 99999999999999999887333444677778777876 78888 5544 13444444
Q ss_pred C--c-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEeCC-----ceEEEe
Q 010933 452 Q--A-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN-----SLFFHY 496 (497)
Q Consensus 452 ~--~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-----~~~i~~ 496 (497)
+ . .+| ...........+...+.+++|+|||++|+.++.+ .+++|+
T Consensus 378 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CTTCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred CCceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 4 2 666 2222223334467789999999999998877532 388886
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=5.8e-23 Score=220.31 Aligned_cols=363 Identities=10% Similarity=0.052 Sum_probs=244.2
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|...+.++.|+++ .++++++.|+.+.||.+.... .....+..|.
T Consensus 201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g----------------------~~~~~l~~~~------------ 245 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG----------------------KDLRKHTSFT------------ 245 (1045)
T ss_dssp CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS----------------------CSCEECCCCC------------
T ss_pred CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC----------------------CcceEecCCC------------
Confidence 57889999999998 667778888999999876421 1123334443
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCC-CCccccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP-PSFAHGYHLEWTE 188 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 188 (497)
.+..++| +|+|+.++++. ++.|.+|++....+..+....... ......+.+.+....++ ++...++.+.
T Consensus 246 -~~~~~~~--SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~---~~~~~~~~~~v~~~~~S~pdG~~la~~~--- 315 (1045)
T 1k32_A 246 -DYYPRHL--NTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLES---PEDRIISIPSKFAEDFSPLDGDLIAFVS--- 315 (1045)
T ss_dssp -SSCEEEE--EESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCB---CCSEEEECGGGGEEEEEECGGGCEEEEE---
T ss_pred -CcceeeE--cCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccc---cccccccccccceeeecCCCCCEEEEEE---
Confidence 2566788 57888888874 889999998544333111100000 00001122234444555 6666665554
Q ss_pred CcceEEEeecCCccceeeeeeccCCCC-CeeEEEeCCCCCEEEEE-cCCeEE-EEeCccCceeeEEeecCCCccCCCCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~-~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
++.+.+|+.... +... + ..|.. .+..++|+ +|+.|+++ .+..+. +|++. .+.... +.+|...
T Consensus 316 ~~~i~~~~~~~~---~~~~-~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~~~--------l~~~~~~ 380 (1045)
T 1k32_A 316 RGQAFIQDVSGT---YVLK-V-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKAEK--------FEENLGN 380 (1045)
T ss_dssp TTEEEEECTTSS---BEEE-C-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCEEE--------CCCCCCS
T ss_pred cCEEEEEcCCCC---ceEE-c-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCceE--------ecCCccc
Confidence 567888887643 2222 2 56666 89999999 99999998 878888 89987 444333 3367788
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-- 343 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-- 343 (497)
+..++|+|+| +.|++++.++.|++||+.+++.. ..... |...+..++|+|||++|+++..
T Consensus 381 ~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~~~-------------~~~~v~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 381 VFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIERS-------------REAMITDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp EEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEEC-------------SSSCCCCEEECTTSCEEEEEEEEC
T ss_pred eeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----EeccC-------------CCCCccceEECCCCCeEEEEecCc
Confidence 9999999999 99999999999999999987643 33322 3467899999999999988642
Q ss_pred ---------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC-
Q 010933 344 ---------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS- 413 (497)
Q Consensus 344 ---------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~- 413 (497)
+.|++||+.. ++ ...+..|...+ ..++|+|||++|+.++.++...+|+.....
T Consensus 443 ~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~ 505 (1045)
T 1k32_A 443 HGETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 505 (1045)
T ss_dssp SSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred cccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence 3899999985 55 55555554432 579999999999999987777666543211
Q ss_pred -----------------------------------------cceEEEeccCcceeeeEeecCCCcccccccceeE-----
Q 010933 414 -----------------------------------------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTR----- 447 (497)
Q Consensus 414 -----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~----- 447 (497)
.....+..|.+.+..+.+++ ++.. +++
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~--dg~~-----~~~~~~~g 578 (1045)
T 1k32_A 506 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE--SSIL-----IYSVPVHG 578 (1045)
T ss_dssp ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS--SEEE-----EEECCCCC
T ss_pred ccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcC--CCeE-----EEEecccC
Confidence 11233444666777888877 5554 443
Q ss_pred ------eeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 448 ------GLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 448 ------~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
.+.+.. .+| ......... ....+..++|+|||+.|++++.+.+.+|.
T Consensus 579 ~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~~v~~~~~S~DG~~l~~~~~~~i~~~d 634 (1045)
T 1k32_A 579 EFAAYYQGAPEKGVLLKYDVKTRKVTE--VKNNLTDLRLSADRKTVMVRKDDGKIYTF 634 (1045)
T ss_dssp SHHHHHHCCCCCEEEEEEETTTCCEEE--EEEEEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred cccccccccCCCceEEEEECCCCcEEE--eecCcceEEECCCCCEEEEEcCCcEEEEe
Confidence 122223 555 222111111 12678899999999999999999999986
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=7.2e-23 Score=187.25 Aligned_cols=226 Identities=12% Similarity=0.142 Sum_probs=158.7
Q ss_pred EeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCEEEE
Q 010933 49 VGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFIL 128 (497)
Q Consensus 49 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s 128 (497)
.++.|+.|++||+.+++. ..+..|. ..|.+++| +|++++|++
T Consensus 17 ~~~~~~~i~~~d~~~~~~------------------------~~~~~~~------------~~v~~~~~--spdg~~l~~ 58 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM------------------------RVVWQTP------------ELFEAPNW--SPDGKYLLL 58 (297)
T ss_dssp -CCCCEEEEEEETTTTEE------------------------EEEEEES------------SCCEEEEE--CTTSSEEEE
T ss_pred CCCcceeEEEEeCCCCce------------------------eeeccCC------------cceEeeEE--CCCCCEEEE
Confidence 356789999999987643 2344566 78999999 789999998
Q ss_pred EeCCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceeee
Q 010933 129 STNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQK 207 (497)
Q Consensus 129 ~s~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (497)
++ ++.|.+||+.+ ++...+.
T Consensus 59 ~~-~~~i~~~d~~~~~~~~~~~---------------------------------------------------------- 79 (297)
T 2ojh_A 59 NS-EGLLYRLSLAGDPSPEKVD---------------------------------------------------------- 79 (297)
T ss_dssp EE-TTEEEEEESSSCCSCEECC----------------------------------------------------------
T ss_pred Ec-CCeEEEEeCCCCCCceEec----------------------------------------------------------
Confidence 87 78999999987 6533211
Q ss_pred eeccCC-CCCeeEEEeCCCCCEEEEE-cC--CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE-EE
Q 010933 208 VYPHAH-DFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YS 282 (497)
Q Consensus 208 ~~~~~h-~~~v~~~~~~~~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~ 282 (497)
..+ ...+.+++|+|+++.|+++ .+ +...+|.++........ +..+ ..+..++|+|++ +.|+ ++
T Consensus 80 ---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~-~~~~~~~~spdg-~~l~~~~ 147 (297)
T 2ojh_A 80 ---TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------MTKN-LPSYWHGWSPDG-KSFTYCG 147 (297)
T ss_dssp ---CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------CCSS-SSEEEEEECTTS-SEEEEEE
T ss_pred ---cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------eecC-CCccceEECCCC-CEEEEEE
Confidence 233 3567889999999999887 33 45555554422222222 2223 348899999999 6665 77
Q ss_pred eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceeee
Q 010933 283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT 360 (497)
Q Consensus 283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~~ 360 (497)
+.++.+++|+++...... ..+. .+...+.+++|+|+|++|+.+. ++.+++|++...+..+..
T Consensus 148 ~~~~~~~l~~~~~~~~~~---~~~~-------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~ 211 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVE---TRLT-------------HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER 211 (297)
T ss_dssp EETTEEEEEEEETTTCCE---EECC-------------CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE
T ss_pred CCCCceEEEEEECCCCcc---eEcc-------------cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE
Confidence 889999999965321110 1111 2345789999999999888753 588999988744556666
Q ss_pred eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCCc
Q 010933 361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----------NLLRIFSHGVGSA 414 (497)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----------g~i~vw~~~~~~~ 414 (497)
+..+...+ ..++|+|++++|++++.+ +.|++||+.+++.
T Consensus 212 ~~~~~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 212 ITDSAYGD---------------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CCCCSEEE---------------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred EecCCccc---------------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 66555432 589999999999988876 5699999987643
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=2.1e-21 Score=180.88 Aligned_cols=238 Identities=11% Similarity=0.084 Sum_probs=162.2
Q ss_pred EEEcCCCCE-EEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933 38 IEFDKTGDY-LAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 116 (497)
Q Consensus 38 i~~sp~g~~-lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~ 116 (497)
..|.+++++ +++++.++.|.+||..+++. ...+..+. ..+ .++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~------------~~~-~~~ 46 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI-----------------------LNQITLGY------------DFV-DTA 46 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECCC------------CEE-EEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce-----------------------eeeEEccC------------Ccc-eEE
Confidence 346665555 67778899999999988753 33333344 456 899
Q ss_pred EEecCCCCEEEEEeC-CccEEEeecCchhe-eccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933 117 WCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 194 (497)
Q Consensus 117 ~~~s~~~~~l~s~s~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (497)
| +|+++++++++. ++.|.+||+.+++. ...
T Consensus 47 ~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~---------------------------------------------- 78 (331)
T 3u4y_A 47 I--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVA---------------------------------------------- 78 (331)
T ss_dssp E--CSSSCEEEEEESTTCEEEEEECSSSSCEEEE----------------------------------------------
T ss_pred E--cCCCCEEEEEeCCCCeEEEEECCCCceeEEe----------------------------------------------
Confidence 9 788887777664 89999999987663 111
Q ss_pred EeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC-C--eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 195 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-L--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
+ ..+..+..+++|+|+|+.++++ .+ + .|.+||+. .++....+ . ......+++
T Consensus 79 --------------~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~-------~-~~~~~~~~~ 134 (331)
T 3u4y_A 79 --------------I-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTI-------P-IPYDAVGIA 134 (331)
T ss_dssp --------------E-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEE-------E-CCTTEEEEE
T ss_pred --------------c-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC-CCCeEEEE-------E-CCCCccceE
Confidence 1 2334445458999999999966 44 3 99999998 55555442 2 234568999
Q ss_pred EeCCCCcEEEEEeCCCe-EEEEEccCCcccccc-cceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeE
Q 010933 271 FHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNL 346 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i 346 (497)
|+|+|..++++...++. |.+|++......... ...+. .......++|+|+|++++++. ++.|
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~spdg~~l~v~~~~~~~v 200 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--------------GGTRPFNITFTPDGNFAFVANLIGNSI 200 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--------------SSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--------------CCCCccceEECCCCCEEEEEeCCCCeE
Confidence 99999334555566688 999999854322110 01111 123478999999999776653 4899
Q ss_pred EEEecCCCCce---eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 010933 347 KLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSA 414 (497)
Q Consensus 347 ~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~~~ 414 (497)
++||+.+ ++. +..+..+... ..++|+|||++|+.++ .++.|.+||..+++.
T Consensus 201 ~v~d~~~-~~~~~~~~~~~~~~~~----------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 201 GILETQN-PENITLLNAVGTNNLP----------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEECSS-TTSCEEEEEEECSSCC----------------CCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred EEEECCC-CcccceeeeccCCCCC----------------ceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 9999986 676 6666544332 4799999999877665 578899999988743
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=9.6e-22 Score=194.48 Aligned_cols=278 Identities=12% Similarity=0.093 Sum_probs=195.5
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEe--cCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
.+.+++|+|||++|++++.|+.|++||+ .+++ .+.++..+ ..
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----------------------~~~~i~~g-------------~~ 223 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----------------------KVAEIKIG-------------IE 223 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----------------------EEEEEECC-------------SE
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----------------------EEEEEecC-------------CC
Confidence 3889999999999999999999999999 5542 24445432 45
Q ss_pred eeEEEEEecC----CCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 112 INRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 112 i~~l~~~~s~----~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
+..++| +| +++++++++ .+++|.+||..+++..........
T Consensus 224 p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~-------------------------------- 269 (543)
T 1nir_A 224 ARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM-------------------------------- 269 (543)
T ss_dssp EEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--------------------------------
T ss_pred cceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCc--------------------------------
Confidence 789999 68 999999987 589999999887765443211000
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCC-CCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHD-FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
..... ..|. ..+..+.++|++..++. . .++.|.+||..... ...+. ...+.
T Consensus 270 ------------------~~~~~-~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-~l~~~------~i~~~ 323 (543)
T 1nir_A 270 ------------------TVDTQ-TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-NLTVT------SIGAA 323 (543)
T ss_dssp ------------------CSSSC-CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS-SCEEE------EEECC
T ss_pred ------------------ccCcc-ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC-cceeE------EeccC
Confidence 00000 1132 37889999998776655 5 89999999998433 22211 11245
Q ss_pred CCeEEEEEeCCCCcEEEEE-eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEE
Q 010933 264 EVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSR 341 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~ 341 (497)
..+..+.|+|+| ++|+++ ..++.|.+||+.++++. ..+.... ..|.+....+ ++|+ |.+++++
T Consensus 324 ~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~----~~i~~g~---------~ph~g~g~~~-~~p~~g~~~~s~ 388 (543)
T 1nir_A 324 PFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDVGK---------TPHPGRGANF-VHPKYGPVWSTS 388 (543)
T ss_dssp SSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSS---------SBCCTTCEEE-EETTTEEEEEEE
T ss_pred cCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEE----EeeccCC---------CCCCCCCccc-CCCCCccEEEec
Confidence 667889999999 765554 56899999999998755 3333200 1122222222 4677 6666666
Q ss_pred e--cCeEEEEecCCC------CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-------CCCcEEE
Q 010933 342 D--YMNLKLWDIRMD------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-------YSNLLRI 406 (497)
Q Consensus 342 ~--~~~i~lwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg~i~v 406 (497)
. +++|.+||+.+. .++++++.+|.... ..++++|++++|++++ .+++|.|
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~---------------~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS---------------LFIKTHPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---------------CCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc---------------eEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence 3 599999999752 67889998886543 4799999999999987 2779999
Q ss_pred EEcCCCCcceEEE--------eccCcceeeeEeecCCCccc
Q 010933 407 FSHGVGSAGGITV--------EAGKNENRKPILQAAPRARR 439 (497)
Q Consensus 407 w~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~ 439 (497)
||+.+++.....+ ..+...+..+.|++ +++.
T Consensus 454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~g~~ 492 (543)
T 1nir_A 454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK--RGDE 492 (543)
T ss_dssp EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS--SSSE
T ss_pred EECCCCCCCeEEeechhhcccCCCCCceEeccCCC--CCCE
Confidence 9999987653444 45678899999999 5555
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=2.8e-21 Score=181.69 Aligned_cols=254 Identities=9% Similarity=0.031 Sum_probs=179.4
Q ss_pred CCcceEEEEEcCCCCEEEEeec-------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 103 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 103 (497)
....+..++|+|+|++|++++. ++.|.+||..+++. ...+...
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~------- 88 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-----------------------TQAIHND------- 88 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-----------------------EEEEEES-------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-----------------------EEEEecC-------
Confidence 4567889999999999988773 56899999987643 2333222
Q ss_pred cccccccceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 104 KSLEIEEKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 104 ~~~~~~~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
..+..++| ++++++++.+ ..++.|.+||..+++...........
T Consensus 89 ------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--------------------------- 133 (353)
T 3vgz_A 89 ------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK--------------------------- 133 (353)
T ss_dssp ------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC---------------------------
T ss_pred ------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc---------------------------
Confidence 34677899 6788866555 56799999999887754322111000
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE---cCCeEEEEeCccCceeeEEeecCCCcc
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~ 259 (497)
.. .......+.+++|+|+|+.++++ .++.|.+||.. .++.... +
T Consensus 134 ---------------------~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~-------~ 180 (353)
T 3vgz_A 134 ---------------------RT----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTA-------I 180 (353)
T ss_dssp ---------------------CC----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEE-------E
T ss_pred ---------------------cc----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEE-------e
Confidence 00 00111236789999999987765 37899999998 5555554 3
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
..+...+..++|+|++ +.+++++.++.|.+||+.+++.. ..+.... .++...+..++|+|+|++++
T Consensus 181 ~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~---------~~~~~~~~~~~~s~dg~~l~ 246 (353)
T 3vgz_A 181 QNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD---------DGKEHFFINISLDTARQRAF 246 (353)
T ss_dssp CCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC---------SSSCCCEEEEEEETTTTEEE
T ss_pred cCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC---------CCCCcccceEEECCCCCEEE
Confidence 3344557889999999 88999999999999999987654 2222100 11234577899999999877
Q ss_pred EEe-c-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc
Q 010933 340 SRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSA 414 (497)
Q Consensus 340 ~~~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~~~ 414 (497)
++. + +.|.+||+.+ ++.+..+..... ..++|+|++++|++++ .++.|.+||..+++.
T Consensus 247 ~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV 306 (353)
T ss_dssp EEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 764 3 8999999986 777777765443 3699999999766555 689999999988743
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=3.6e-21 Score=180.12 Aligned_cols=279 Identities=14% Similarity=0.128 Sum_probs=178.6
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecC-CeEEEEEec--CCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
+.|...+.+++|+|+|++|++++.+ +.|.+|++. +++. +.+..+..+
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~~~~--------- 83 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------------------TFAAESALP--------- 83 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---------------------EEEEEEECS---------
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---------------------eeccccccC---------
Confidence 4567789999999999999988876 999999997 4432 222233222
Q ss_pred cccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
..+..++| +|+++++++++ .++.|.+|++..+....
T Consensus 84 ----~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~------------------------------------- 120 (343)
T 1ri6_A 84 ----GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVG------------------------------------- 120 (343)
T ss_dssp ----SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEE-------------------------------------
T ss_pred ----CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCcccc-------------------------------------
Confidence 45788999 68999887776 48899999985322111
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEe--ecCCCccC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKPSNMD 260 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~--~~~~~~~~ 260 (497)
.+..+ . ....+.+++|+|+++.++++ .++.|.+||+...++..... .. ..
T Consensus 121 --------------------~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~ 174 (343)
T 1ri6_A 121 --------------------VVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----TT 174 (343)
T ss_dssp --------------------EEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE----EC
T ss_pred --------------------ccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc----cc
Confidence 11111 2 23357889999999977665 79999999998424332211 00 11
Q ss_pred CCCCCeEEEEEeCCCCcEEEEE-eCCCeEEEEEccC--CcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 337 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 337 (497)
.....+..++|+|++ ++++++ ..++.|++||+.. ++.. ........... ......+..++|+|+|++
T Consensus 175 ~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~~-------~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 175 VEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPEN-------FSDTRWAADIHITPDGRH 244 (343)
T ss_dssp STTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCTT-------CCSCCCEEEEEECTTSSE
T ss_pred CCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCcc-------ccccCCccceEECCCCCE
Confidence 233577899999999 766554 4789999999954 3221 00111110000 001234668999999998
Q ss_pred EEEEe--cCeEEEEecCCC---CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcC-
Q 010933 338 LLSRD--YMNLKLWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG- 410 (497)
Q Consensus 338 l~~~~--~~~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~- 410 (497)
|+++. ++.|++||+... .+.+..+..+... ..++|+|++++|++++ .++.|.+|+++
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQP----------------RGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSC----------------CCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCcc----------------ceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 87553 499999999731 2233334333321 5799999999988888 58999999654
Q ss_pred -CCCcc-eEEEeccCcceeeeEeec
Q 010933 411 -VGSAG-GITVEAGKNENRKPILQA 433 (497)
Q Consensus 411 -~~~~~-~~~~~~~~~~v~~~~~~~ 433 (497)
++... ...+... .....+++.+
T Consensus 309 ~~g~~~~~~~~~~g-~~p~~i~~~~ 332 (343)
T 1ri6_A 309 EQGLLHEKGRYAVG-QGPMWVVVNA 332 (343)
T ss_dssp TTTEEEEEEEEECS-SSCCEEEEEE
T ss_pred CCceeeEccccccC-CCCeeEEEEc
Confidence 44221 2223332 3344666655
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=2.5e-21 Score=200.78 Aligned_cols=309 Identities=9% Similarity=0.005 Sum_probs=196.9
Q ss_pred cceeEEEEEecCCCCEEEEEeC-Cc-----cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTN-DK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~-d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
..|.+++| +|||++|++++. |+ .|++||+.+++...+....... +++. .+.
T Consensus 37 ~~~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~---------~~~~-----------~~~- 93 (741)
T 2ecf_A 37 PTLMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL---------PGTE-----------TLS- 93 (741)
T ss_dssp CCCEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------------
T ss_pred CCCCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc---------cccc-----------ccc-
Confidence 56899999 799999999998 88 9999999988755433211100 0000 000
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCc--eeeEEeecCCCccCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD--QCFNIVDMKPSNMDD 261 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~ 261 (497)
.+.. ..+.... ......+.+++|+|||+.|+++.++.|++||+.... .... +..
T Consensus 94 -------------~~~~-~~~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~--------l~~ 149 (741)
T 2ecf_A 94 -------------DEEK-ARRERQR--IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ--------LTH 149 (741)
T ss_dssp -----------------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCB--------CCC
T ss_pred -------------chhh-hhhhhhh--hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEE--------ccc
Confidence 0000 0000000 001134778999999999999955999999998331 3322 556
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccccccc--CC-ccccccccccccEEEEeeCCCEE
Q 010933 262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH--GS-KSFFTEIIASISDIKFANDGQHL 338 (497)
Q Consensus 262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~i~~~~~s~~g~~l 338 (497)
+...+..++|+|+| +.|++++ ++.|++||+.+++.. .....+.... .. .-........+..++|||||++|
T Consensus 150 ~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~----~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l 223 (741)
T 2ecf_A 150 GEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQM----QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI 223 (741)
T ss_dssp SSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEE----ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE
T ss_pred CCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEE----EeccCCccceeccccceeeeeccccccceEECCCCCEE
Confidence 77889999999999 8888887 468999999887543 2111100000 00 00000001225789999999999
Q ss_pred EEEe-cC---------------------------------eEEEEecCCCCceeeeee--ecccccccccccCCCCCccc
Q 010933 339 LSRD-YM---------------------------------NLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFD 382 (497)
Q Consensus 339 ~~~~-~~---------------------------------~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 382 (497)
++++ ++ .|++||+.+.++...... .+...
T Consensus 224 ~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~--------------- 288 (741)
T 2ecf_A 224 AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY--------------- 288 (741)
T ss_dssp EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE---------------
T ss_pred EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE---------------
Confidence 8873 33 788889863033222221 12222
Q ss_pred eeEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCCcceEEEeccCc----ceeeeEeecCCCcccccccceeEeeccCc
Q 010933 383 KFECSVSGDGLHFATGSY-----SNLLRIFSHGVGSAGGITVEAGKN----ENRKPILQAAPRARRSSLSNLTRGLYRQA 453 (497)
Q Consensus 383 ~~~~~~s~~~~~l~s~~~-----dg~i~vw~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~l~~~~~d~~ 453 (497)
+..++| |||++|++++. +..|++||+.+++.. ..+..+.. .+..++|+| ++++ +++++.++.
T Consensus 289 ~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~sp--dg~~-----~~~~~~~g~ 359 (741)
T 2ecf_A 289 LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPTWVPLHNSLRFLD--DGSI-----LWSSERTGF 359 (741)
T ss_dssp EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSSCCCCCSCCEECT--TSCE-----EEEECTTSS
T ss_pred EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCCcCCcCCceEECC--CCeE-----EEEecCCCc
Confidence 268999 99999997664 578999999988543 45555443 456889998 5656 888888887
Q ss_pred -eec--C-CCCCcccccccCCCeEEE-EEecCCCEEEEEe-CC---ceEEEe
Q 010933 454 -HEN--S-SSGHHELSYNLSSKLLHL-AWHPTTNLIACAN-GN---SLFFHY 496 (497)
Q Consensus 454 -~iw--~-~~~~~~~~~~~~~~i~~l-~~~p~~~~la~~~-~~---~~~i~~ 496 (497)
.+| . .+. ...+..+...|..+ +|+|+++.|+..+ .+ .+.+|.
T Consensus 360 ~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 360 QHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred cEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 888 2 333 55566777888887 5999999876554 44 567774
No 141
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.3e-21 Score=202.19 Aligned_cols=318 Identities=11% Similarity=0.060 Sum_probs=202.4
Q ss_pred EEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 116 (497)
Q Consensus 37 ~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~ 116 (497)
.++|+|+|++++++ .|+.|++||+.+++. ...+.+|... ...|.+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~-----------------------~~~~~~~~~~---------~~~~~~~~ 66 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS-----------------------YTILSNRTMK---------SVNASNYG 66 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCE-----------------------EEEECHHHHH---------TTTCSEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcE-----------------------EEEEcccccc---------ccceeeEE
Confidence 78999999766655 689999999988753 2223333200 01388999
Q ss_pred EEecCCCCEEEEEeC---------CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 117 WCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 117 ~~~s~~~~~l~s~s~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
| +|||++|++++. ++.|++||+.+++....
T Consensus 67 ~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~--------------------------------------- 105 (719)
T 1z68_A 67 L--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG--------------------------------------- 105 (719)
T ss_dssp E--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---------------------------------------
T ss_pred E--CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc---------------------------------------
Confidence 9 799999999876 78999999988774110
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCe-
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI- 266 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i- 266 (497)
......+..++|+|||+.|+++.++.|++|++. +++...+. ..++...+
T Consensus 106 -----------------------~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~-~g~~~~l~------~~~~~~~v~ 155 (719)
T 1z68_A 106 -----------------------NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP-GDPPFQIT------FNGRENKIF 155 (719)
T ss_dssp -----------------------SCCCSSBCCEEECSSTTCEEEEETTEEEEESST-TSCCEECC------CCCBTTTEE
T ss_pred -----------------------eecCcccccceECCCCCEEEEEECCeEEEEeCC-CCCcEEEe------cCCCcCCeE
Confidence 000134778999999999999978899999998 44443321 22222222
Q ss_pred ----------------EEEEEeCCCCcEEEEEeCCC----------------------------------eEEEEEccCC
Q 010933 267 ----------------TSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQS 296 (497)
Q Consensus 267 ----------------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~ 296 (497)
.+++|+||| +.|++++.|. .|++||+.++
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~ 234 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP 234 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred cccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence 489999999 8999887652 7888998876
Q ss_pred cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-----CeEEEEe----cCCCCceeeee----ee
Q 010933 297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWD----IRMDSTPVATF----KI 363 (497)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-----~~i~lwd----~~~~~~~~~~~----~~ 363 (497)
+... .+.. .....+.+|...+..++|+||++++++..+ ..|.+|| +.+ ++....+ ..
T Consensus 235 ~~~~----~~~~-----~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~ 304 (719)
T 1z68_A 235 AYVG----PQEV-----PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEES 304 (719)
T ss_dssp HHHC----CEEC-----CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEEC
T ss_pred Cccc----eeEc-----cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEeccccc
Confidence 5310 0000 000112345677899999999887777432 3588899 664 5554444 34
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEE--EeCCC--cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccc
Q 010933 364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 439 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s--~~~dg--~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 439 (497)
+...+.. .. ...+.|+|||+.|+. ...+| .|.+|++.+++ ...+..+...+..+.+. . ...+
T Consensus 305 ~~~~~~~--------~~--~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d-~~~i 370 (719)
T 1z68_A 305 RTGWAGG--------FF--VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-T-QDSL 370 (719)
T ss_dssp SSSCSSS--------SS--CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-C-SSEE
T ss_pred CCceEcc--------cc--CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-e-CCEE
Confidence 4443210 00 015899999996654 44555 56667776654 35666666667777766 2 3333
Q ss_pred ccccceeEeec----cCc-eecC--C--CCC-cccc----cccCCCeEEEEEecCCCEEEEEe
Q 010933 440 SSLSNLTRGLY----RQA-HENS--S--SGH-HELS----YNLSSKLLHLAWHPTTNLIACAN 488 (497)
Q Consensus 440 ~~~~~l~~~~~----d~~-~iw~--~--~~~-~~~~----~~~~~~i~~l~~~p~~~~la~~~ 488 (497)
++++.. ++. ++|. . +.. ...+ .++...+..++|+|+++.++..+
T Consensus 371 -----~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 371 -----FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC 428 (719)
T ss_dssp -----EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred -----EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence 444433 355 8882 2 211 1111 12556788999999999888654
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=5e-21 Score=179.66 Aligned_cols=266 Identities=10% Similarity=0.113 Sum_probs=170.4
Q ss_pred cCCcceEEEEEcCCCCEEEEeec---CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
.+...+..++|+|||+ |++++. ++.|++|++.+++. +.+..+..+.
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------------~~~~~~~~~~--------- 85 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------------HKLNTVVAPG--------- 85 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------------EEEEEEEEES---------
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------------EEeeeeecCC---------
Confidence 3556778899999999 555554 68999999977642 3344444455
Q ss_pred ccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
..+..++| +|++++|++++ .++.|.+|++.. +....+.......
T Consensus 86 ---~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~----------------------------- 131 (347)
T 3hfq_A 86 ---TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG----------------------------- 131 (347)
T ss_dssp ---CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC-----------------------------
T ss_pred ---CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC-----------------------------
Confidence 66889999 68999888887 789999999953 3322111000000
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
. .+. ...+...+.+++|+|+|++++++ .++.|.+|++...+........ .....
T Consensus 132 -----------------~-~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~----~~~~g 186 (347)
T 3hfq_A 132 -----------------H-GPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL----TMEAG 186 (347)
T ss_dssp -----------------C-CSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE----ECCTT
T ss_pred -----------------C-CCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE----EcCCC
Confidence 0 000 01234568899999999966666 7899999999843433221100 11123
Q ss_pred CCeEEEEEeCCCCcEEEE-EeCCCeEEEEEccC--CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 264 EVITSAEFHPIYCNLLAY-SSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~-~~~dg~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
..+..++|+|+| +++++ ...++.|++|++.. ++.. ....+...... + .....+..++|+|+|++|++
T Consensus 187 ~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~~------~-~~~~~~~~i~~spdG~~l~v 256 (347)
T 3hfq_A 187 FGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPAD------Y-TAHNGAAAIRLSHDGHFLYV 256 (347)
T ss_dssp CCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCTT------C-CSCCEEEEEEECTTSCEEEE
T ss_pred CCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCCC------C-CCCCcceeEEECCCCCEEEE
Confidence 457889999999 75555 56689999999874 3321 00111110000 0 00135788999999998865
Q ss_pred E-e-cCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-CcEEEEEcC
Q 010933 341 R-D-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFSHG 410 (497)
Q Consensus 341 ~-~-~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g~i~vw~~~ 410 (497)
+ . ++.|.+|++...+ +.+..+..+.... ..++|+|||++|++++.+ +.|.+|+++
T Consensus 257 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 257 SNRGYNTLAVFAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEETTTEEEEEEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EeCCCCEEEEEEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 4 4 4999999997423 3344444432221 589999999999888764 899999554
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=4.7e-21 Score=175.13 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=166.4
Q ss_pred cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecC-CccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
...|...|.+++|+|+|++|++++ ++.|++||+.+ ++. .....+|..
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-----------------------~~~~~~~~~-------- 84 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-----------------------EKVDTGFAT-------- 84 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-----------------------EECCCTTCC--------
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-----------------------eEecccccc--------
Confidence 345788999999999999999987 78999999987 643 223334421
Q ss_pred ccccceeEEEEEecCCCCEEEEEe--CCccEEEeecC--chheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s--~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
..|.+++| +|++++|++++ .++..+||.++ ++....
T Consensus 85 ---~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------- 124 (297)
T 2ojh_A 85 ---ICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPRL----------------------------------- 124 (297)
T ss_dssp ---CBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-----------------------------------
T ss_pred ---ccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceEE-----------------------------------
Confidence 66889999 78999999998 44567777654 222111
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMD 260 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (497)
+ .. ...+..++|+|+++.|+ ++ .++.+.+|+++........ +.
T Consensus 125 --------------------------~-~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~-------~~ 169 (297)
T 2ojh_A 125 --------------------------M-TK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR-------LT 169 (297)
T ss_dssp --------------------------C-CS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE-------CC
T ss_pred --------------------------e-ec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE-------cc
Confidence 1 12 22488899999999887 56 8999999997533333322 55
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEe-CCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 338 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 338 (497)
.+...+.+++|+|++ ..|++++ .++.+++|++.. +... ..+.. |...+..++|+|+|++|
T Consensus 170 ~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~----~~~~~-------------~~~~~~~~~~s~dg~~l 231 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSV----ERITD-------------SAYGDWFPHPSPSGDKV 231 (297)
T ss_dssp CSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCE----EECCC-------------CSEEEEEEEECTTSSEE
T ss_pred cCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCc----EEEec-------------CCcccCCeEECCCCCEE
Confidence 677889999999999 7777665 589999999863 2221 22222 33568899999999998
Q ss_pred EEEe-c-----------CeEEEEecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 339 LSRD-Y-----------MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 339 ~~~~-~-----------~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
++++ + +.|++||+.. ++. +..+..|...+ ..++|+|++++|++++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 232 VFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTM---------------NSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTS---------------CSCCBCTTSSEEEEEEECC
T ss_pred EEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCCCCccc---------------ccceECCCCCEEEEEEecc
Confidence 8763 2 4699999985 544 33344555433 5799999999999887754
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=3.8e-20 Score=172.32 Aligned_cols=253 Identities=10% Similarity=0.096 Sum_probs=167.5
Q ss_pred CcceEEEEEcCCCCEEEEeec-CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
...+ +++|+|+|++|++++. ++.|.+||..+++. ....+..+. .
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----------------------~~~~~~~~~------------~ 84 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP----------------------KVVAIQEGQ------------S 84 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC----------------------EEEEEEECS------------S
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce----------------------eEEecccCC------------C
Confidence 4556 9999999997776665 88999999987642 023344444 4
Q ss_pred ceeEEEEEecCCCCEEEEEeCCc---cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
+..+++| +|++++++++..++ .|.+||+.+++....
T Consensus 85 ~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--------------------------------------- 123 (331)
T 3u4y_A 85 SMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST--------------------------------------- 123 (331)
T ss_dssp CCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTEEEEE---------------------------------------
T ss_pred CccceEE--CCCCCEEEEecCCCCcccEEEEECCCCCeEEE---------------------------------------
Confidence 4555899 78999999555543 899999987764321
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCe-EEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLR-INLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
+ .+.....+++|+|+|+.+++ + .++. |.+|++...+...... . .......
T Consensus 124 ---------------------~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~---~~~~~~~ 176 (331)
T 3u4y_A 124 ---------------------I--PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q---EFISGGT 176 (331)
T ss_dssp ---------------------E--ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E---EEECSSS
T ss_pred ---------------------E--ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C---ccccCCC
Confidence 1 12334689999999986655 4 6677 9999988444332210 0 0112345
Q ss_pred CeEEEEEeCCCCcEE-EEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-
Q 010933 265 VITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 342 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~- 342 (497)
.+..++|+|+| +++ +++..++.|++||+.+++... ....+.. ...+..++|+|+|++++++.
T Consensus 177 ~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 177 RPFNITFTPDG-NFAFVANLIGNSIGILETQNPENIT-LLNAVGT--------------NNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp SEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSCE-EEEEEEC--------------SSCCCCEEECTTSSEEEEECS
T ss_pred CccceEECCCC-CEEEEEeCCCCeEEEEECCCCcccc-eeeeccC--------------CCCCceEEECCCCCEEEEEEc
Confidence 57999999999 755 455568999999999876510 0122222 24578899999999877663
Q ss_pred -cCeEEEEecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 010933 343 -YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 412 (497)
Q Consensus 343 -~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~ 412 (497)
++.|.+||+.+ ++. +..+..+.... .........++|+||+++|++++. ++.|.+||+...
T Consensus 241 ~~~~i~~~d~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 241 STVDVFNFNQLS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp SEEEEEEEETTT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCCEEEEEECCC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 38899999986 555 33333220000 001111135899999998876554 679999999864
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.9e-20 Score=175.14 Aligned_cols=275 Identities=11% Similarity=0.105 Sum_probs=169.8
Q ss_pred cceeEEEEEecCCCCEEEEEeCC-ccEEEeecC--chheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d-~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..+..++| +|++++|++++.+ +.|.+|++. ++....
T Consensus 38 ~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--------------------------------------- 76 (343)
T 1ri6_A 38 GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--------------------------------------- 76 (343)
T ss_dssp SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEE---------------------------------------
T ss_pred CCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceee---------------------------------------
Confidence 66889999 7899999988876 999999987 433221
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
+..+ ..+. .+..++|+|+++.++++ .++.|.+||+. .+....... .+. ...
T Consensus 77 -------------------~~~~-~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~----~~~-~~~ 129 (343)
T 1ri6_A 77 -------------------AAES-ALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVD----VVE-GLD 129 (343)
T ss_dssp -------------------EEEE-ECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEE----EEC-CCT
T ss_pred -------------------cccc-ccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCccccccc----ccc-CCC
Confidence 1111 2222 67899999999987665 68999999995 232221110 022 234
Q ss_pred CeEEEEEeCCCCcEEEEEe-CCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933 265 VITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 342 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 342 (497)
.+.+++|+|++ +.+++++ .++.|++||+.+ ++........+.. .....+..++|+|+|++++++.
T Consensus 130 ~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 130 GCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT------------VEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp TBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC------------STTCCEEEEEECTTSSEEEEEE
T ss_pred CceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeeccccccc------------CCCCCcceEEECCCCCEEEEEe
Confidence 57889999999 7777776 899999999987 4322100001111 0113577899999999876653
Q ss_pred --cCeEEEEecCCC-Cce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCC--CC-
Q 010933 343 --YMNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV--GS- 413 (497)
Q Consensus 343 --~~~i~lwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~--~~- 413 (497)
++.|++|++... ++. ...+....... .....+..++|+|++++|+ ++..++.|.+|++.. +.
T Consensus 197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 197 ELNSSVDVWELKDPHGNIECVQTLDMMPENF---------SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TTTTEEEEEESSCTTSCCEEEEEEECSCTTC---------CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCCEEEEEEecCCCCcEEEEeeccccCccc---------cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 499999999631 222 22222111000 0001124799999999887 455799999999983 22
Q ss_pred cceEEEeccCcceeeeEeecCCCcccccccceeEee-ccCc-eecCCC---CCcc--cccccCCCeEEEEEecCCC
Q 010933 414 AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-YRQA-HENSSS---GHHE--LSYNLSSKLLHLAWHPTTN 482 (497)
Q Consensus 414 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~d~~-~iw~~~---~~~~--~~~~~~~~i~~l~~~p~~~ 482 (497)
.....+..+.. +..+++++ ++.. +++++ .++. .+|... +... ..........+++|.|+.+
T Consensus 268 ~~~~~~~~~~~-~~~~~~s~--dg~~-----l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 268 SKEGFQPTETQ-PRGFNVDH--SGKY-----LIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEEECSSS-CCCEEECT--TSSE-----EEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred EEeeeecCCCc-cceEEECC--CCCE-----EEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence 22233444444 88899998 5555 66666 5566 899221 1111 1112223455778877654
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=5.7e-21 Score=197.54 Aligned_cols=289 Identities=11% Similarity=0.064 Sum_probs=187.4
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..+.+++| +|||+++++ +.|+.|++||+.+++...+.
T Consensus 17 ~~~~~~~~--spdg~~~~~-~~dg~i~~~d~~~g~~~~~~---------------------------------------- 53 (723)
T 1xfd_A 17 IHDPEAKW--ISDTEFIYR-EQKGTVRLWNVETNTSTVLI---------------------------------------- 53 (723)
T ss_dssp CCCCCCCB--SSSSCBCCC-CSSSCEEEBCGGGCCCEEEE----------------------------------------
T ss_pred ccccccEE--cCCCcEEEE-eCCCCEEEEECCCCcEEEEe----------------------------------------
Confidence 44678899 688887665 78999999999887643321
Q ss_pred cceEEEeecCCccceeeeeeccCCCC---CeeEEEeCCCCCEEEEE-cC---------CeEEEEeCccCceeeEEeecCC
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKP 256 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~ 256 (497)
..|.. .|.+++|+|||+.|+++ .+ +.+++||+. +++...+
T Consensus 54 ---------------------~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~l----- 106 (723)
T 1xfd_A 54 ---------------------EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP-HGDPQSL----- 106 (723)
T ss_dssp ---------------------CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS-SCCCEEC-----
T ss_pred ---------------------ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC-CCceEec-----
Confidence 33332 48999999999999987 53 789999998 4443222
Q ss_pred CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc---------cccc
Q 010933 257 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---------ASIS 327 (497)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~ 327 (497)
.....|...+..++|+|+| +.||+++. +.|++||+.+++.. +....+... ..+.++. ..+.
T Consensus 107 ~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~----~~~~~~~~~----~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAI----RVVSTGKEG----VIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp CCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCE----EEECCCBTT----TEEEEECCHHHHHTTSSSSE
T ss_pred cCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceE----EEecCCCCC----ceECcccceeEEEEeccCcc
Confidence 1234455668899999999 88888876 79999999887643 222211000 0001111 1347
Q ss_pred EEEEeeCCCEEEEEe-cC----------------------------------eEEEEecCCCCceeeeeeeccccccccc
Q 010933 328 DIKFANDGQHLLSRD-YM----------------------------------NLKLWDIRMDSTPVATFKIHEHLRPKLC 372 (497)
Q Consensus 328 ~~~~s~~g~~l~~~~-~~----------------------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 372 (497)
+++|||||++|++++ ++ .|++||+.+ ++....+..+.....
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~--- 252 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRM--- 252 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGG---
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCC---
Confidence 899999999998864 22 788888875 554444543311000
Q ss_pred ccCCCCCccceeEEEEcCCCCEEEEEeC----CCcEEEEEcCCCCcceEEEe-ccCccee----eeEeecCCCccccccc
Q 010933 373 DLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGSAGGITVE-AGKNENR----KPILQAAPRARRSSLS 443 (497)
Q Consensus 373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~i~vw~~~~~~~~~~~~~-~~~~~v~----~~~~~~~~~~~~~~~~ 443 (497)
....+..++|+|||++|++.+. +..|++||+.+++.. ..+. .+...+. .++|+| +++.
T Consensus 253 ------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~sp--dg~~---- 319 (723)
T 1xfd_A 253 ------REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-KKHEDESEAWLHRQNEEPVFSK--DGRK---- 319 (723)
T ss_dssp ------SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-EEEEEECSSCCCCCCCCCEECT--TSCS----
T ss_pred ------ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce-EEEEeccCCEEeccCCCceEcC--CCCe----
Confidence 0011268999999999977653 357999999988544 3333 3344443 788998 6665
Q ss_pred ceeE--eeccC----c-eec--C--CCCC---cccccccCCCeEE-EEEecCCCEEEEEeC----CceEEEe
Q 010933 444 NLTR--GLYRQ----A-HEN--S--SSGH---HELSYNLSSKLLH-LAWHPTTNLIACANG----NSLFFHY 496 (497)
Q Consensus 444 ~l~~--~~~d~----~-~iw--~--~~~~---~~~~~~~~~~i~~-l~~~p~~~~la~~~~----~~~~i~~ 496 (497)
++. +..++ . .+| . .++. ...+......+.. ++|+|||+.|+..+. +...+|.
T Consensus 320 -l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 320 -FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp -EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred -EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 554 44555 3 454 4 2333 3334434445555 699999999987663 3467774
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=9.4e-21 Score=195.29 Aligned_cols=280 Identities=8% Similarity=0.049 Sum_probs=186.9
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
..|.+++|||| ++++.+ .++.|++||+.+++. ..+..+. ..+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~------------------------~~l~~~~------------~~~ 123 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV------------------------TYLFDTN------------EET 123 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE------------------------EEEECCT------------TCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce------------------------EEccCCc------------ccc
Confidence 57999999999 666655 459999999987642 2233444 668
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCc-----hheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
.+++| +|||+.|+++ .|+.|++|++.+ ++...+.......
T Consensus 124 ~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-------------------------------- 168 (706)
T 2z3z_A 124 ASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET-------------------------------- 168 (706)
T ss_dssp TTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT--------------------------------
T ss_pred cCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC--------------------------------
Confidence 88999 7899999885 679999999987 6544321111000
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c---------------------------------
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--------------------------------- 233 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--------------------------------- 233 (497)
..+.. . .+ ..+...+.++.|+|||+.|+++ .
T Consensus 169 -----~~~g~-------~--~~-~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~ 233 (706)
T 2z3z_A 169 -----LVYGQ-------A--VH-QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH 233 (706)
T ss_dssp -----EEESS-------C--CG-GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred -----eEccc-------c--hh-hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence 00000 0 00 2334457789999999999886 3
Q ss_pred CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC-----eEEEEEccCCcccccccceecc
Q 010933 234 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRD 308 (497)
Q Consensus 234 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~ 308 (497)
+..|++||+. +++...+. ....|...+.+++|+|+| +.|++++.++ .|++||+.+++... .....
T Consensus 234 ~~~l~~~d~~-~~~~~~~~-----~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~~~~~ 303 (706)
T 2z3z_A 234 HVTVGIYHLA-TGKTVYLQ-----TGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVR---TLFVE 303 (706)
T ss_dssp EEEEEEEETT-TTEEEECC-----CCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEE---EEEEE
T ss_pred eeEEEEEECC-CCceEeec-----cCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceee---EEEEc
Confidence 2579999998 45443321 122567789999999999 8888887775 99999999873221 12111
Q ss_pred cccccCCccccccccccccEEEEee--CCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeE
Q 010933 309 AAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 385 (497)
Q Consensus 309 ~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (497)
... .....+..++|+| +|+++++++. +.++||++...++.+..+..+...+ ..
T Consensus 304 ~~~---------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v---------------~~ 359 (706)
T 2z3z_A 304 TDK---------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV---------------TN 359 (706)
T ss_dssp ECS---------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE---------------EE
T ss_pred cCC---------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE---------------Ee
Confidence 000 0011346789999 9998888754 8888888764466677776655432 34
Q ss_pred -EEEcCCCCEEEEEeC-CC----cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccc
Q 010933 386 -CSVSGDGLHFATGSY-SN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 439 (497)
Q Consensus 386 -~~~s~~~~~l~s~~~-dg----~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 439 (497)
++|+|+++.|+.++. ++ .|+.||+.++. ...+. +...+..++|+| +++.
T Consensus 360 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l~-~~~~~~~~~~sp--dg~~ 414 (706)
T 2z3z_A 360 FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLT-PESGMHRTQLSP--DGSA 414 (706)
T ss_dssp EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEESC-CSSSEEEEEECT--TSSE
T ss_pred eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceecc-CCCceEEEEECC--CCCE
Confidence 799999998876554 44 67777776653 23333 667788999998 5655
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=1.3e-20 Score=189.72 Aligned_cols=271 Identities=14% Similarity=0.062 Sum_probs=180.6
Q ss_pred CcceEEEEEcCCCCEEEEeec-CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
..+|++++|+|||++||+++. ||+++||++++++. ..+..|.. .
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------~~lt~~~~-----------~ 65 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------VKLNREPI-----------N 65 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------------------------EECCSSCC-----------S
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------------------------Eeeecccc-----------c
Confidence 457999999999999999886 99999999876542 22333320 4
Q ss_pred ceeEEEEEecCCCCEEEEEeC---CccEEEeecCc---hheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 111 KINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD---QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~---d~~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
.+..++| +|| +.+++++. +...++|.+.. +....
T Consensus 66 ~~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~------------------------------------- 105 (582)
T 3o4h_A 66 SVLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR------------------------------------- 105 (582)
T ss_dssp EECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE-------------------------------------
T ss_pred ccccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCcccc-------------------------------------
Confidence 6899999 677 67776664 55667766543 11110
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCE--EEEEcCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSADDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
+ .. ...+...+|+|+|+. ++++.++.+.+||+. +++...+. .+
T Consensus 106 ------------------------l-~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~--------~~ 150 (582)
T 3o4h_A 106 ------------------------L-EA-VKPMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELA--------RL 150 (582)
T ss_dssp ------------------------C-TT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEE--------EE
T ss_pred ------------------------c-cC-CCCceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEee--------cC
Confidence 0 11 112335577777764 344455556699998 55544431 12
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCC----CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEE
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 338 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 338 (497)
.. .+++|+|+| +.|++++.+ +.|++||+.+++.. .+.. |...+..++|||||++|
T Consensus 151 ~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~-------------~~~~~~~~~~SpDG~~l 209 (582)
T 3o4h_A 151 PG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDS-------------GEGSFSSASISPGMKVT 209 (582)
T ss_dssp SS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-----EECC-------------SSCEEEEEEECTTSCEE
T ss_pred CC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-----Eeec-------------CCCccccceECCCCCEE
Confidence 22 789999999 999988877 78999999887642 2222 34668999999999999
Q ss_pred EEEec-C--eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 339 LSRDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 339 ~~~~~-~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
++++. + .|++||+.+ ++.. .+..+...+.... ..+....+|+|||.++++++.|+.+++|++ ++..
T Consensus 210 ~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 210 AGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp EEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred EEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 97644 6 899999986 6555 5655554321000 000012339999999999999999999999 4222
Q ss_pred eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc--eec
Q 010933 416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN 456 (497)
Q Consensus 416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~--~iw 456 (497)
....+.+..++++ +++. +++++.+.. .+|
T Consensus 279 ----~~~~~~v~~~~~s---dg~~-----l~~~s~~~~p~~l~ 309 (582)
T 3o4h_A 279 ----EAPQGNHGRVVLW---RGKL-----VTSHTSLSTPPRIV 309 (582)
T ss_dssp ----CCCSSEEEEEEEE---TTEE-----EEEEEETTEEEEEE
T ss_pred ----ccCCCceEEEEec---CCEE-----EEEEcCCCCCCeEE
Confidence 2344677788887 4555 677766655 555
No 149
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=1.7e-19 Score=186.39 Aligned_cols=324 Identities=11% Similarity=0.056 Sum_probs=197.6
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 113 (497)
...+++|+|||++|+++ |+.|++||+.+++. ...+.+|... .......
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~ 65 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-----------------------SVFLENSTFD-------EFGHSIN 65 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE-----------------------EEEECTTTTT-------TCCSCCC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce-----------------------EEEEechhhh-------hhccccc
Confidence 45689999999999986 89999999998753 3334555410 0002234
Q ss_pred EEEEEecCCCCEEEEEeCC---------ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 114 RVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
+++| +|||++|+.++.+ +.+.+||+.+++...+
T Consensus 66 ~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l------------------------------------ 107 (740)
T 4a5s_A 66 DYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE------------------------------------ 107 (740)
T ss_dssp EEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS------------------------------------
T ss_pred ceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc------------------------------------
Confidence 5788 7999999999876 4556888877764331
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
..|...+...+|||||+.|+.+.++.|++|+.. ++...++ +..++..
T Consensus 108 --------------------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~~~~~~l------t~~g~~~ 154 (740)
T 4a5s_A 108 --------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRI------TWTGKED 154 (740)
T ss_dssp --------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEEC------CSCCBTT
T ss_pred --------------------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECC-CCceEEE------cCCCCcc
Confidence 456678999999999999999988899999998 4444432 1223322
Q ss_pred Ce-----------------EEEEEeCCCCcEEEEEeCCC------------------------------------eEEEE
Q 010933 265 VI-----------------TSAEFHPIYCNLLAYSSSRG------------------------------------FVRLV 291 (497)
Q Consensus 265 ~i-----------------~~~~~~~~~~~~l~~~~~dg------------------------------------~i~v~ 291 (497)
.+ ..+.|+||| +.||.++.|. .|++|
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred ceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 22 358999999 8888876432 34455
Q ss_pred EccC---CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----c-CeEEEEecCCCCc----e--
Q 010933 292 DMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDST----P-- 357 (497)
Q Consensus 292 d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~-~~i~lwd~~~~~~----~-- 357 (497)
|+.+ ++... . ..+.. ...+.+|...+..++|+|||++++... + ..|++||+.+ ++ +
T Consensus 234 d~~~~~~~~~~~-~-~~l~~-------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~ 303 (740)
T 4a5s_A 234 NTDSLSSVTNAT-S-IQITA-------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGRWNCLV 303 (740)
T ss_dssp ETTSCCSSSCCC-E-EEECC-------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTEEEECG
T ss_pred ECCCCCCCCcce-E-EEecC-------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-CccccceeE
Confidence 5544 31100 0 00000 000113566789999999999776642 1 4799999986 55 2
Q ss_pred eeee--eecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeC-C--CcEEEEEcCCCCcceEEEeccCcceeeeEe
Q 010933 358 VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY-S--NLLRIFSHGVGSAGGITVEAGKNENRKPIL 431 (497)
Q Consensus 358 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~-d--g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 431 (497)
+..+ ..+...+.. .......|+|||+.|+ ..+. + ..|++|++.++.. ..+....-.+..+..
T Consensus 304 ~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~lT~g~~~v~~~~~ 371 (740)
T 4a5s_A 304 ARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TFITKGTWEVIGIEA 371 (740)
T ss_dssp GGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EESCCSSSCEEEEEE
T ss_pred EEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--EecccCCEEEEEEEE
Confidence 2222 334433310 0012688999999877 6664 3 4588888876533 344444444544432
Q ss_pred ecCCCcccccccceeEeec----cCc-eec--CCCC-Ccc-ccc----ccCCCeEEEEEecCCCEEEEEeCC
Q 010933 432 QAAPRARRSSLSNLTRGLY----RQA-HEN--SSSG-HHE-LSY----NLSSKLLHLAWHPTTNLIACANGN 490 (497)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~----d~~-~iw--~~~~-~~~-~~~----~~~~~i~~l~~~p~~~~la~~~~~ 490 (497)
++ ...+ ..++.. .+. ++| .... ... .+. +....+..++|+|++++++....+
T Consensus 372 -~d-~~~i-----~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~ 436 (740)
T 4a5s_A 372 -LT-SDYL-----YYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSG 436 (740)
T ss_dssp -EC-SSEE-----EEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred -Ee-CCEE-----EEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCC
Confidence 32 2222 344433 233 777 2111 111 111 123567899999999988766543
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=2e-19 Score=173.09 Aligned_cols=282 Identities=11% Similarity=0.008 Sum_probs=173.0
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...++++++++++.++++|+.++ ++||+....... .. .... ...+..+ .....+.+...
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~------------~~~~-~~~~~~~----~~~~~~~~~~~ 94 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NK------------PGDD-PNKIVDK----VQGLLVPMKFP 94 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CC------------TTCC-TTCEEEC----CCCEEECCSSC
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cc------------cccC-ccccccc----CccccccCCCc
Confidence 45689999999999999999887 999986532110 00 0000 0000000 00111222377
Q ss_pred eeEEEEEecCCCCEEE----EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 112 INRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~----s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
|.+++| ++++++|+ +++.|+.|++||+.++...... ..
T Consensus 95 v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~---~~--------------------------------- 136 (434)
T 2oit_A 95 IHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ---QK--------------------------------- 136 (434)
T ss_dssp EEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS---SC---------------------------------
T ss_pred ccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCcC---Cc---------------------------------
Confidence 999999 68999999 7889999999999875210000 00
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
. ....... +.+|...|.+++|+|+ +..|+++ .||+|++||++.. ..... ..+|...
T Consensus 137 --~-----------~~~~~~~-~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~-------~~~~~~~ 194 (434)
T 2oit_A 137 --R-----------PFAYHKL-LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCA-------TLPSTVA 194 (434)
T ss_dssp --C-----------CSEEEEC-CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEE-------EECGGGC
T ss_pred --c-----------eeeeeec-cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceee-------ccCCCCc
Confidence 0 0001122 2689999999999997 7889998 9999999999844 33322 3468899
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y 343 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~ 343 (497)
|.+++|+|+| ++|++|+.||.|++||++ ++.. ..+..|.. ....|...+.++.|++++.++++.+ +
T Consensus 195 v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~~------~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 195 VTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPPF------YESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEEEECTTS-SCEEEEETTSCEEEECTT-CCEE----EEECCCTT------CCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred eeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccc----ccccCCcc------cCCCCceeEEEEEEecCceEEEEEccCC
Confidence 9999999999 999999999999999998 3322 22222110 0012345799999999988886642 2
Q ss_pred C------eEEEEecCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 010933 344 M------NLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV 411 (497)
Q Consensus 344 ~------~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~ 411 (497)
| .+++|+++... +.-..+..........+ ..... ..-+.+-++.+++++++. .+.|.|.....
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~----~~r~~-~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSC----TERQH-HYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCC----SSSCC-CEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCC----CCcCc-ceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 2 49999997522 11122222222111000 00100 012344466666665554 56677777543
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=4.6e-20 Score=185.62 Aligned_cols=257 Identities=8% Similarity=-0.029 Sum_probs=181.8
Q ss_pred cceeEEEEEecCCCCEEEEEeC-CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.+|++++| +|||+.|++++. |++++||++.+++...+
T Consensus 22 ~~~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~~l---------------------------------------- 59 (582)
T 3o4h_A 22 VEKYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETVKL---------------------------------------- 59 (582)
T ss_dssp SCEEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEEEC----------------------------------------
T ss_pred cchheeec--CCCCCeEEEEEccCCceeEEEEcCCCcEee----------------------------------------
Confidence 67999999 579999999886 99999999865553321
Q ss_pred CcceEEEeecCCccceeeeeeccCCC-CCeeEEEeCCCCCEEEEE-c---CCeEEEEeCcc--CceeeEEeecCCCccCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHD-FNINSISNNSDCETFVSA-D---DLRINLWNLEI--SDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~-~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~ 261 (497)
..|. ..+..++|+|+ +.++++ . +....+|.+.. .+.... +..
T Consensus 60 ----------------------t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~--------l~~ 108 (582)
T 3o4h_A 60 ----------------------NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR--------LEA 108 (582)
T ss_dssp ----------------------CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE--------CTT
T ss_pred ----------------------ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccc--------ccC
Confidence 2333 57889999999 677666 4 45566665543 333222 111
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
. ..+...+|+|++...+++.+.++.+.+||+.+++.. ..... ...+++|||||++|+++
T Consensus 109 ~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~----------------~~~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 109 V-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELARL----------------PGFGFVSDIRGDLIAGL 167 (582)
T ss_dssp S-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEEE----------------SSCEEEEEEETTEEEEE
T ss_pred C-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----EeecC----------------CCceEEECCCCCEEEEE
Confidence 1 223466888887444555555555669999887542 22222 12889999999999965
Q ss_pred -ec----CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCc
Q 010933 342 -DY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSA 414 (497)
Q Consensus 342 -~~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--~i~vw~~~~~~~ 414 (497)
.+ +.|++||+.+ ++. ..+..+...+ ..++|||||++|+++..++ .|++||+.+++.
T Consensus 168 ~~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~~---------------~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSS-GGL-RVFDSGEGSF---------------SSASISPGMKVTAGLETAREARLVTVDPRDGSV 230 (582)
T ss_dssp EEEETTEEEEEEEETTT-CCC-EEECCSSCEE---------------EEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred EEcCCCCeEEEEEcCCC-CCc-eEeecCCCcc---------------ccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence 33 6799999875 443 4565555433 5899999999999888888 899999998754
Q ss_pred ceEEEeccCcceeeeE--------eecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecCCCEEE
Q 010933 415 GGITVEAGKNENRKPI--------LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIA 485 (497)
Q Consensus 415 ~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la 485 (497)
. .+..|...+..++ |+| ++.+ +++++.++. ++|..+ .... .....|.+++|+ ++++++
T Consensus 231 ~--~~~~~~~~~~~~~~~~~~~~~~sp--dg~~-----~~~~~~~g~~~l~~~g-~~~~--~~~~~v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 231 E--DLELPSKDFSSYRPTAITWLGYLP--DGRL-----AVVARREGRSAVFIDG-ERVE--APQGNHGRVVLW-RGKLVT 297 (582)
T ss_dssp E--ECCCSCSHHHHHCCSEEEEEEECT--TSCE-----EEEEEETTEEEEEETT-EEEC--CCSSEEEEEEEE-TTEEEE
T ss_pred E--EccCCCcChhhhhhccccceeEcC--CCcE-----EEEEEcCCcEEEEEEC-Ceec--cCCCceEEEEec-CCEEEE
Confidence 4 7778888888888 998 5565 888888988 999542 2211 344678899999 999888
Q ss_pred EEeCC
Q 010933 486 CANGN 490 (497)
Q Consensus 486 ~~~~~ 490 (497)
+++.+
T Consensus 298 ~~s~~ 302 (582)
T 3o4h_A 298 SHTSL 302 (582)
T ss_dssp EEEET
T ss_pred EEcCC
Confidence 87743
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=3.7e-19 Score=171.24 Aligned_cols=229 Identities=9% Similarity=0.087 Sum_probs=146.5
Q ss_pred ccCCcceEEEEEcCCCCEEE----EeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 104 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~la----sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 104 (497)
+.+...|++++|+|+|++|| +|+.|+.|+|||+.++.... .........+..+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~------------~~~~~~~~~~~~~~~h~------- 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA------------KQQKRPFAYHKLLKDAG------- 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT------------CSSCCCSEEEECCCSGG-------
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC------------cCCcceeeeeeccCCCC-------
Confidence 34567899999999999999 78899999999987541000 00000112245567788
Q ss_pred ccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 105 SLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 105 ~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
..|.+++| +|+ +.+|++++.||+|++||++++....
T Consensus 150 -----~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~~~------------------------------------ 186 (434)
T 2oit_A 150 -----GMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVKVC------------------------------------ 186 (434)
T ss_dssp -----GSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEEEE------------------------------------
T ss_pred -----CceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCccee------------------------------------
Confidence 88999999 455 7899999999999999998764211
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
.. .+|...|.+++|+|+|++|++| .|+.|++||.+ .. ....+.........|
T Consensus 187 ------------------------~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 187 ------------------------AT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-EKKVIPCPPFYESDH 239 (434)
T ss_dssp ------------------------EE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-EEEEECCCTTCCTTS
T ss_pred ------------------------ec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-ccccccCCcccCCCC
Confidence 11 4678899999999999999999 99999999998 33 233322111111134
Q ss_pred CCCeEEEEEeCCCCcEEEE-EeCCC------eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933 263 TEVITSAEFHPIYCNLLAY-SSSRG------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 335 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~-~~~dg------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 335 (497)
...+.+++|++++ .++++ ...|| .+++||++..+.... ..+...... ...+.+...+...+.+-++.
T Consensus 240 ~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~--~~~~~~~~~---~~~~~~~r~~~~~~~~l~dw 313 (434)
T 2oit_A 240 PVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHP--EIFVNFMEP---CYGSCTERQHHYYLSYIEEW 313 (434)
T ss_dssp CEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCC--CEEEECCCS---SCCCCSSSCCCEEEEEEGGG
T ss_pred ceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCC--cceEecccC---CCCCCCCcCcceeeehhccC
Confidence 4589999999987 65544 33443 389999986532100 111111100 00001112223334444777
Q ss_pred CEEEEEec--CeEEEEecC
Q 010933 336 QHLLSRDY--MNLKLWDIR 352 (497)
Q Consensus 336 ~~l~~~~~--~~i~lwd~~ 352 (497)
+++++++. +.|.+....
T Consensus 314 ~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 314 DLVLAASAASTEVSILARQ 332 (434)
T ss_dssp TEEEEEETTCSBCEEEEEC
T ss_pred CEEEEecCCCCceeEEEec
Confidence 88777643 666666654
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=4.6e-19 Score=166.22 Aligned_cols=216 Identities=12% Similarity=0.083 Sum_probs=136.1
Q ss_pred cceeEEEEEecCCCCEEEEEeC---CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..+..++| +|+++ +++++. ++.|.+|++.++....+
T Consensus 40 ~~p~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-------------------------------------- 78 (347)
T 3hfq_A 40 QNPTYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-------------------------------------- 78 (347)
T ss_dssp SCCCCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEE--------------------------------------
T ss_pred CCcceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEe--------------------------------------
Confidence 55778999 68888 565543 68999999976553221
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCc----cC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN----MD 260 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~----~~ 260 (497)
..+ ..+...+..++|+|+|+.|+++ .++.|.+|++...+....+....... ..
T Consensus 79 --------------------~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~ 137 (347)
T 3hfq_A 79 --------------------NTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPE 137 (347)
T ss_dssp --------------------EEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTT
T ss_pred --------------------eee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcc
Confidence 111 2455678899999999987775 68999999996443322221110000 01
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc-CCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
.....+.+++|+|+| +++++...++.|++||+. +++... ...+..+ .......++|+|||++++
T Consensus 138 ~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~--~~~~~~~------------~g~~p~~~~~spdg~~l~ 202 (347)
T 3hfq_A 138 QDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSE--QSVLTME------------AGFGPRHLVFSPDGQYAF 202 (347)
T ss_dssp CSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEE--EEEEECC------------TTCCEEEEEECTTSSEEE
T ss_pred ccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEE--eeeEEcC------------CCCCCceEEECCCCCEEE
Confidence 123458899999999 666666678999999998 443210 0111110 012467899999999777
Q ss_pred EEe--cCeEEEEecCCC-Cce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q 010933 340 SRD--YMNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV 411 (497)
Q Consensus 340 ~~~--~~~i~lwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~ 411 (497)
++. ++.|++|++... ++. +..+....... ........++|+|||++|+ +...++.|.+|++..
T Consensus 203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY---------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC---------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC---------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 753 389999998741 332 22222211100 0001125799999999875 556689999999974
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=9.6e-19 Score=164.98 Aligned_cols=263 Identities=11% Similarity=0.087 Sum_probs=165.7
Q ss_pred CCcceEEEEEcCCCCEEEEeecC----CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
+...+..++|+|||++|++++.+ +.|.+|+++...- ..+.+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~--------- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG--------- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence 56677889999999999999875 7999999876310 112233333333
Q ss_pred ccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
.....+++ +++++++++ .++.|.+|++..........
T Consensus 100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~----------------------------------- 137 (361)
T 3scy_A 100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPAS----------------------------------- 137 (361)
T ss_dssp ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCS-----------------------------------
T ss_pred ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccc-----------------------------------
Confidence 44566665 677777776 68899999997533211000
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCce------ee-----EEe
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQ------CF-----NIV 252 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~------~~-----~~~ 252 (497)
........ .+.. ...+...+.+++|+|+|+.+++ + .++.|.+|++..... .. ...
T Consensus 138 -------~~~~~~g~---~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 138 -------DVIEFKGS---GPDK--ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp -------EEEECCCC---CSCT--TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred -------eeEEccCC---CCCc--cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 00000000 0000 0233456788999999997655 4 689999999874332 11 111
Q ss_pred ecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEE
Q 010933 253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 331 (497)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 331 (497)
...+...+.+++|+|+| +++++++ .++.|.+||+.+++... ...+.. ...+......++|
T Consensus 206 ------~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~----------~~~~~~~~~~i~~ 266 (361)
T 3scy_A 206 ------KVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA----------DTVNAQGSGDIHL 266 (361)
T ss_dssp ------ECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES----------CSSCCCCEEEEEE
T ss_pred ------ecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec----------CCCCCCCcccEEE
Confidence 12334567899999999 7777766 68999999998664310 011111 0111234579999
Q ss_pred eeCCCEEEEE-e--cCeEEEEecCC-CCc--eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcE
Q 010933 332 ANDGQHLLSR-D--YMNLKLWDIRM-DST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLL 404 (497)
Q Consensus 332 s~~g~~l~~~-~--~~~i~lwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i 404 (497)
+|||++|+++ . ++.|.+|++.. .++ .+..+.. ... ...++|+|||++|++++ .++.|
T Consensus 267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~---------------~~~~~~spdg~~l~~~~~~~~~v 330 (361)
T 3scy_A 267 SPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH---------------PRNFIITPNGKYLLVACRDTNVI 330 (361)
T ss_dssp CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC---------------CCEEEECTTSCEEEEEETTTTEE
T ss_pred CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC---------------CceEEECCCCCEEEEEECCCCCE
Confidence 9999988765 3 37999999962 133 2333333 111 15899999999998887 57899
Q ss_pred EEEEcC
Q 010933 405 RIFSHG 410 (497)
Q Consensus 405 ~vw~~~ 410 (497)
.+|+++
T Consensus 331 ~v~~~d 336 (361)
T 3scy_A 331 QIFERD 336 (361)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 997665
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=1.5e-19 Score=168.64 Aligned_cols=232 Identities=13% Similarity=0.006 Sum_probs=161.8
Q ss_pred CeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe----------
Q 010933 216 NINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---------- 283 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---------- 283 (497)
.+..++|+|+|+.++ ++ .++.|.+||+. .++....+.... ...+...+..++|+|+| +.|++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLST--PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHF 110 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECCB--TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECC-CCCeEeeEEcCC--cccccccccceEECCCC-CEEEEEecccccccccc
Confidence 367899999998765 45 78999999998 444444332110 00022356789999999 8888876
Q ss_pred --CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeee
Q 010933 284 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF 361 (497)
Q Consensus 284 --~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~ 361 (497)
.++.|.+||+.+++.. ..+.. ...+..++|+|+|++|+++ ++.|++||+.+ ++....+
T Consensus 111 ~~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~ 170 (337)
T 1pby_B 111 EVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDK 170 (337)
T ss_dssp EECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEE
T ss_pred cccCceEEEEECCCCcEE----EEEeC--------------CCCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeee
Confidence 5799999999887543 22222 1357889999999988887 68999999986 7776666
Q ss_pred eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC------------------------cEEEEEcCCCCcceE
Q 010933 362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN------------------------LLRIFSHGVGSAGGI 417 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg------------------------~i~vw~~~~~~~~~~ 417 (497)
..+... ..+.|+|++++|+..+.++ .|.+||+.+++....
T Consensus 171 ~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 234 (337)
T 1pby_B 171 PIQSWE----------------AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp CSTTTT----------------TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred eccccC----------------CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence 544321 1357888888766554332 468999998866545
Q ss_pred EEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC-CcccccccCCCeEEEEEecCCCEEEEEe-CCceEE
Q 010933 418 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 494 (497)
Q Consensus 418 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~-~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i 494 (497)
.+..+...+..++++| +++. ++++ ++. .+|.... ...........+.+++|+|+|++|++++ ++.+++
T Consensus 235 ~~~~~~~~~~~~~~s~--dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v 305 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNP--AKTR-----AFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305 (337)
T ss_dssp EEEECSSCEEEEEECT--TSSE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred ecCCCCCceeeEEECC--CCCE-----EEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEE
Confidence 5666777788899998 6655 5665 455 8883322 2222333445678999999999888877 556888
Q ss_pred Ee
Q 010933 495 HY 496 (497)
Q Consensus 495 ~~ 496 (497)
|.
T Consensus 306 ~d 307 (337)
T 1pby_B 306 YD 307 (337)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=1e-19 Score=170.60 Aligned_cols=256 Identities=9% Similarity=0.040 Sum_probs=170.7
Q ss_pred EEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 116 (497)
Q Consensus 37 ~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~ 116 (497)
.+++++++.++++++.++.|++||..+++. +..+..+.. ..+..++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~-----------~~~~~~~ 49 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPDK-----------FGPGTAM 49 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSSC-----------CSSCEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE-----------------------EEEEecCCC-----------CCCceeE
Confidence 457889999999999999999999987643 333332210 2467899
Q ss_pred EEecCCCCEEEE-EeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEE
Q 010933 117 WCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA 195 (497)
Q Consensus 117 ~~~s~~~~~l~s-~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (497)
| +|++++++. ...++.|.+||+.+++..........+
T Consensus 50 ~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~---------------------------------------- 87 (349)
T 1jmx_B 50 M--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP---------------------------------------- 87 (349)
T ss_dssp E--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST----------------------------------------
T ss_pred E--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc----------------------------------------
Confidence 9 688886654 457899999999877643321100000
Q ss_pred eecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC------------CeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 196 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------------LRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 196 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
..+...+..++|+|+|+.++++ .+ +.|.+||+.+ ++..+.+ ....+
T Consensus 88 ---------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~-----~~~~~ 146 (349)
T 1jmx_B 88 ---------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPV-----RTFPM 146 (349)
T ss_dssp ---------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCS-----EEEEC
T ss_pred ---------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC-cccccee-----eeccC
Confidence 0002246789999999999987 54 9999999984 2221110 01122
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccccc-cc--------------CC------------
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SH--------------GS------------ 315 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~-~~--------------~~------------ 315 (497)
...+.+++|+|++ + +++++. .|.+||+.+++... .+..+.. .+ ..
T Consensus 147 ~~~~~~~~~s~dg-~-l~~~~~--~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T 1jmx_B 147 PRQVYLMRAADDG-S-LYVAGP--DIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 218 (349)
T ss_dssp CSSCCCEEECTTS-C-EEEESS--SEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred CCcccceeECCCC-c-EEEccC--cEEEEeCCCCceec----cccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence 3457889999999 7 555543 49999998876542 2211100 00 00
Q ss_pred ----------------------------ccccccccccccEEEEee-CCCEEEEEecCeEEEEecCCCCceeeeeeeccc
Q 010933 316 ----------------------------KSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 316 ----------------------------~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
...+..+...+..++|+| +|++++++ ++.|.+||+.+ ++.+..+.....
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~ 296 (349)
T 1jmx_B 219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHT 296 (349)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEECSSC
T ss_pred cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEcCCCC
Confidence 000001123456788999 99999988 89999999986 777777664433
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
. .+++|+|++++|++++.++.|++||+.+++.+
T Consensus 297 ~----------------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 297 Y----------------YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp C----------------CEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred c----------------cceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 2 48999999999999999999999999887443
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=6.8e-19 Score=164.09 Aligned_cols=250 Identities=11% Similarity=0.056 Sum_probs=170.9
Q ss_pred CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc-ccCccccccccccccc-ceeEEEEEecCC
Q 010933 45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEE-KINRVRWCAAPN 122 (497)
Q Consensus 45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~i~~l~~~~s~~ 122 (497)
++|++++.++.|++||..+++. +..+. ++. . .+..++| +|+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~------------~~~~~~~~~--s~d 44 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADA------------GPTPMVPMV--APG 44 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTC------------TTCCCCEEE--CTT
T ss_pred cEEEEcCCCCeEEEEECCCCcE-----------------------EEEEEcCCC------------CCCccceEE--cCC
Confidence 5789999999999999987643 33332 221 1 4788999 688
Q ss_pred CCEEEE-EeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCc
Q 010933 123 GSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 201 (497)
Q Consensus 123 ~~~l~s-~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (497)
++.++. ++.++.|.+||+.+++..........
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----------------------------------------------- 77 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----------------------------------------------- 77 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-----------------------------------------------
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc-----------------------------------------------
Confidence 877654 45678999999987764332110000
Q ss_pred cceeeeeeccCCCCCeeEEEeCCCCCEEEEE-------------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 202 HARCQKVYPHAHDFNINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 202 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
..|...+..++|+|+|+.++++ .++.|.+||+. .++....+ . ....+.+
T Consensus 78 ---------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~-------~-~~~~~~~ 139 (337)
T 1pby_B 78 ---------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAF-------E-APRQITM 139 (337)
T ss_dssp ---------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEE-------E-CCSSCCC
T ss_pred ---------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC-CCcEEEEE-------e-CCCCcce
Confidence 0122246678999999988876 36999999998 55554442 1 1345678
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccc--c----ccCC---------------------------
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA--E----SHGS--------------------------- 315 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~--~----~~~~--------------------------- 315 (497)
++|+|++ ++|+++ ++.|++||+.+++... .+..+. . .+..
T Consensus 140 ~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 140 LAWARDG-SKLYGL--GRDLHVMDPEAGTLVE----DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EEECTTS-SCEEEE--SSSEEEEETTTTEEEE----EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred eEECCCC-CEEEEe--CCeEEEEECCCCcEee----eeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence 8999999 777777 6889999998876431 111100 0 0000
Q ss_pred --------------------ccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccC
Q 010933 316 --------------------KSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 375 (497)
Q Consensus 316 --------------------~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (497)
...+..+...+.+++|+|+|++++++ ++.|++||+.+ ++.+..+......
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~-------- 282 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY-------- 282 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC--------
T ss_pred cccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce--------
Confidence 00012233456679999999999988 69999999986 7777777654332
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933 376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 422 (497)
Q Consensus 376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 422 (497)
.+++|+|++++|++++.++.|++||+.+++.+ ..+..+
T Consensus 283 --------~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~-~~~~~~ 320 (337)
T 1pby_B 283 --------YSVNVSTDGSTVWLGGALGDLAAYDAETLEKK-GQVDLP 320 (337)
T ss_dssp --------CEEEECTTSCEEEEESBSSEEEEEETTTCCEE-EEEECG
T ss_pred --------eeEEECCCCCEEEEEcCCCcEEEEECcCCcEE-EEEEcC
Confidence 58999999999999999999999999988544 455443
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=2.3e-18 Score=161.73 Aligned_cols=240 Identities=11% Similarity=0.060 Sum_probs=167.7
Q ss_pred CcceEEEEEcCCCCEEEEe-ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcc-cccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE-FDYLKSLEIE 109 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-~~~~~~~~~~ 109 (497)
...+..++|+|+|++++++ ..++.|.+||..+++. +..+..+... ... ...
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~~~~~~----~~~ 140 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV-----------------------KGRLVLDDRKRTEE----VRP 140 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------------------EEEEESCCCCCCSS----CCC
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee-----------------------EEEEecCCCccccc----cCC
Confidence 4457789999999966554 5579999999988753 2333332200 000 000
Q ss_pred cceeEEEEEecCCCCEEEEEe--CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..+.+++| +|+++++++++ .++.|.+||..+++....
T Consensus 141 ~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~--------------------------------------- 179 (353)
T 3vgz_A 141 LQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIKLKTA--------------------------------------- 179 (353)
T ss_dssp CEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTEEEEE---------------------------------------
T ss_pred CCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCceEEE---------------------------------------
Confidence 12688999 68888877775 578899999987664321
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
+ ..+...+..++|+|+|+.++++ .++.|.+||.. .++....+... ..++...+
T Consensus 180 ---------------------~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~---~~~~~~~~ 233 (353)
T 3vgz_A 180 ---------------------I-QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLL---DDGKEHFF 233 (353)
T ss_dssp ---------------------E-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECC---CSSSCCCE
T ss_pred ---------------------e-cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcC---CCCCCccc
Confidence 1 2234456788999999999998 99999999998 55555443221 22355678
Q ss_pred EEEEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c
Q 010933 267 TSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y 343 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~ 343 (497)
..++|+|++ +.+++++. ++.|.+||+.+++.. ..+.. .....++|+|+|++++++. +
T Consensus 234 ~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~---------------~~~~~~~~s~dg~~l~v~~~~~ 293 (353)
T 3vgz_A 234 INISLDTAR-QRAFITDSKAAEVLVVDTRNGNIL----AKVAA---------------PESLAVLFNPARNEAYVTHRQA 293 (353)
T ss_dssp EEEEEETTT-TEEEEEESSSSEEEEEETTTCCEE----EEEEC---------------SSCCCEEEETTTTEEEEEETTT
T ss_pred ceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEEc---------------CCCceEEECCCCCEEEEEECCC
Confidence 899999999 76665554 599999999887654 33332 1235799999999766653 4
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
+.|.+||+.+ ++.+..+...... ..++|+|||++|+++..++
T Consensus 294 ~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 294 GKVSVIDAKS-YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TEEEEEETTT-TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEECC
T ss_pred CeEEEEECCC-CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEccc
Confidence 9999999986 7777777655432 5899999999887777654
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=5e-19 Score=168.66 Aligned_cols=238 Identities=13% Similarity=0.138 Sum_probs=153.4
Q ss_pred EEEcCCCCEEEEeec-CC--eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeE
Q 010933 38 IEFDKTGDYLAVGDR-GG--RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 114 (497)
Q Consensus 38 i~~sp~g~~lasg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~ 114 (497)
.+|||||++||.++. +| .|.+||+.+++. .....++. ..+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----------------------~~lt~~~~------------~~~~~ 85 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----------------------TQLTEGRG------------DNTFG 85 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----------------------EECCCSSC------------BCSSS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----------------------EEeeeCCC------------CCccc
Confidence 789999999999887 66 488888877643 23334444 44556
Q ss_pred EEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933 115 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 194 (497)
Q Consensus 115 l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (497)
++| +||++.|+.++.++.|.+||+.+++...+.
T Consensus 86 ~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~--------------------------------------------- 118 (388)
T 3pe7_A 86 GFL--SPDDDALFYVKDGRNLMRVDLATLEENVVY--------------------------------------------- 118 (388)
T ss_dssp CEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEE---------------------------------------------
T ss_pred eEE--cCCCCEEEEEeCCCeEEEEECCCCcceeee---------------------------------------------
Confidence 789 789999999999999999999887643321
Q ss_pred EeecCCccceeeeeeccCCCCCeeEE--EeCCCCCEEEEE-----------------------cCCeEEEEeCccCceee
Q 010933 195 ANVGNSVHARCQKVYPHAHDFNINSI--SNNSDCETFVSA-----------------------DDLRINLWNLEISDQCF 249 (497)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~~~-----------------------~d~~i~iwd~~~~~~~~ 249 (497)
..+...+... .++++++.++.. .+..|++||+. .++..
T Consensus 119 ----------------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~g~~~ 181 (388)
T 3pe7_A 119 ----------------QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK-TGEST 181 (388)
T ss_dssp ----------------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT-TCCEE
T ss_pred ----------------echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC-CCceE
Confidence 1222223222 347888877631 34689999998 44443
Q ss_pred EEeecCCCccCCCCCCeEEEEEeC-CCCcEEEEEeCC------CeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933 250 NIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 322 (497)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (497)
. +..+...+..++|+| +| ..|+.+..+ ..|.++|+..+.. +.+..+. .
T Consensus 182 ~--------l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~-----------~ 236 (388)
T 3pe7_A 182 V--------ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHA-----------E 236 (388)
T ss_dssp E--------EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCC-----------T
T ss_pred E--------eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCC-----------C
Confidence 3 234556789999999 99 888877753 3788888765532 1111100 0
Q ss_pred cccccEEEEeeCCCEEEEEe--cC----eEEEEecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCE
Q 010933 323 IASISDIKFANDGQHLLSRD--YM----NLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH 394 (497)
Q Consensus 323 ~~~i~~~~~s~~g~~l~~~~--~~----~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 394 (497)
...+..+.|+|||+.|+..+ ++ .|++||+.+ ++. +..+.++..... .. ....|+|||+.
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~---------~~---~~~~~spdg~~ 303 (388)
T 3pe7_A 237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS---------NY---DGSLMVGDGSD 303 (388)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE---------CT---TSSEEEEEECC
T ss_pred CcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee---------cC---CCCeEccCCCc
Confidence 02467889999999776542 22 399999986 543 222222111000 00 13579999998
Q ss_pred EEEE---------eCCCcEEEEEcCCC
Q 010933 395 FATG---------SYSNLLRIFSHGVG 412 (497)
Q Consensus 395 l~s~---------~~dg~i~vw~~~~~ 412 (497)
|+.. ..+..|++||+.++
T Consensus 304 l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 304 APVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp C------------CCCCEEEEEETTTT
T ss_pred ceeEeeeccccccCCCCEEEEEeccCC
Confidence 8854 45678999999876
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=2.2e-18 Score=162.62 Aligned_cols=258 Identities=11% Similarity=0.014 Sum_probs=163.3
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEec-CCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
..+..++|+|+|++|++++.+ .|.+|++. +++. ..+.....+ +.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~---------------------~~~~~~~~~-------------g~ 84 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI---------------------VHEASHPIG-------------GH 84 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE---------------------EEEEEEECC-------------SS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE---------------------EEeeEeecC-------------CC
Confidence 467899999999999999888 99999987 5532 101111111 11
Q ss_pred eeEEEEEecCCCCE--EEEEe-------------CCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCC
Q 010933 112 INRVRWCAAPNGSM--FILST-------------NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNP 175 (497)
Q Consensus 112 i~~l~~~~s~~~~~--l~s~s-------------~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (497)
+..++| +|++++ ++++. .++.+.+|++.. ++...
T Consensus 85 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~---------------------------- 134 (365)
T 1jof_A 85 PRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEK---------------------------- 134 (365)
T ss_dssp GGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEE----------------------------
T ss_pred CccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcc----------------------------
Confidence 344677 788884 44443 578888888863 33211
Q ss_pred CCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEee
Q 010933 176 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVD 253 (497)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~ 253 (497)
.+..+...+...+.+++|+|+|+.++++ .++.|++|++...++......
T Consensus 135 -----------------------------~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~ 185 (365)
T 1jof_A 135 -----------------------------NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp -----------------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred -----------------------------eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee
Confidence 0111101345678899999999988776 578999999972222221100
Q ss_pred cCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEcc--CCcccc--cccceecccccccCCccccccccc----
Q 010933 254 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCD--HSARILRDAAESHGSKSFFTEIIA---- 324 (497)
Q Consensus 254 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---- 324 (497)
. ....+...+..++|+|+| +++++++. ++.|.+|++. +++... .....+.. .+.+|..
T Consensus 186 ~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---------~~~g~~~~~~~ 252 (365)
T 1jof_A 186 V---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP---------GIPDRDPETGK 252 (365)
T ss_dssp E---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT---------TCCCBCTTTSS
T ss_pred E---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC---------CcCCccccccc
Confidence 0 012245678999999999 88877765 7899999875 343210 00011111 0111222
Q ss_pred --cccEEE-EeeCCCEEEEEe-c-C-----eEEEEecCCCCceeee---eeecccccccccccCCCCCccceeEEEEcC-
Q 010933 325 --SISDIK-FANDGQHLLSRD-Y-M-----NLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECSVSG- 390 (497)
Q Consensus 325 --~i~~~~-~s~~g~~l~~~~-~-~-----~i~lwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~- 390 (497)
.+..++ |+|||++|+++. . + .|.+|++...++.... ...+.... ..++|+|
T Consensus 253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~a~sp~ 317 (365)
T 1jof_A 253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---------------HSNAVSPC 317 (365)
T ss_dssp BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---------------TCCCEEEC
T ss_pred ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---------------ccceecCC
Confidence 478899 999999887763 2 3 8999999633554331 22222111 4789999
Q ss_pred --CCCEEEEEeCC-CcEEEEEcCCC
Q 010933 391 --DGLHFATGSYS-NLLRIFSHGVG 412 (497)
Q Consensus 391 --~~~~l~s~~~d-g~i~vw~~~~~ 412 (497)
||++|++++.+ +.|.+|+++..
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999999874 89999998765
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=3.4e-17 Score=154.30 Aligned_cols=272 Identities=9% Similarity=0.042 Sum_probs=165.3
Q ss_pred cceeEEEEEecCCCCEEEEEeCC----ccEEEeecCc--hheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d----~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
..+..++| +|++++|++++.+ +.|.+|++.. ++...+
T Consensus 50 ~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~----------------------------------- 92 (361)
T 3scy_A 50 ANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL----------------------------------- 92 (361)
T ss_dssp SCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE-----------------------------------
T ss_pred CCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe-----------------------------------
Confidence 55788999 7899999999875 7999998865 332211
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEE---eecC---
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI---VDMK--- 255 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~---~~~~--- 255 (497)
... ..+......+++ +++.|+++ .++.|.+|++...+..... ....
T Consensus 93 -----------------------~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 93 -----------------------NTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp -----------------------EEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred -----------------------eEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 111 233445667777 77777665 7899999999744332111 0000
Q ss_pred CCccCCCCCCeEEEEEeCCCCcEEEEEe-CCCeEEEEEccCCcc------cccc--cceecccccccCCccccccccccc
Q 010933 256 PSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSAL------CDHS--ARILRDAAESHGSKSFFTEIIASI 326 (497)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~i 326 (497)
+.....+...+++++|+|+| +++++++ .++.|++|++..... +... ...... .+....
T Consensus 147 ~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~ 213 (361)
T 3scy_A 147 PDKERQTMPHLHCVRITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGP 213 (361)
T ss_dssp SCTTTCSSCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCE
T ss_pred CCccccCCCcceEEEECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCC
Confidence 00011233456889999999 7665554 589999999875431 1000 000010 112456
Q ss_pred cEEEEeeCCCEEEEEe--cCeEEEEecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-
Q 010933 327 SDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS- 401 (497)
Q Consensus 327 ~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d- 401 (497)
..++|+|+|++++++. ++.|.+|++.. ++. +..+...... ......++|+|||++|+++..+
T Consensus 214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~------------~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 214 RHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVN------------AQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSC------------CCCEEEEEECTTSSEEEEEECSS
T ss_pred eEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCC------------CCCcccEEECCCCCEEEEECCCC
Confidence 7899999999887765 49999999984 543 2222221110 0011589999999999776654
Q ss_pred -CcEEEEEcC--CCCc-ceEEEeccCcceeeeEeecCCCcccccccceeEee-ccCc-eec--C--CCCCcccc-cccCC
Q 010933 402 -NLLRIFSHG--VGSA-GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL-YRQA-HEN--S--SSGHHELS-YNLSS 470 (497)
Q Consensus 402 -g~i~vw~~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~d~~-~iw--~--~~~~~~~~-~~~~~ 470 (497)
+.|.+|++. ++.. ....+.. ...+..++|+| ++++ |++++ .++. .+| . .++..... ..+..
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp--dg~~-----l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~ 352 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP--NGKY-----LLVACRDTNVIQIFERDQATGLLTDIKKDIKVD 352 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT--TSCE-----EEEEETTTTEEEEEEECTTTCCEEECSCCEECS
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC--CCCE-----EEEEECCCCCEEEEEEECCCCcEeecceeeeCC
Confidence 899999996 3332 2233333 45678899998 6666 67766 4455 786 2 22221111 12334
Q ss_pred CeEEEEEe
Q 010933 471 KLLHLAWH 478 (497)
Q Consensus 471 ~i~~l~~~ 478 (497)
.+.++.|.
T Consensus 353 ~p~~v~~~ 360 (361)
T 3scy_A 353 KPVCLKFV 360 (361)
T ss_dssp SEEEEEEE
T ss_pred CCeEEEEc
Confidence 67788875
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=5.4e-18 Score=175.04 Aligned_cols=271 Identities=12% Similarity=0.073 Sum_probs=173.4
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
.+++| +|+++ ++..+.|+.|++||+.+++...+.
T Consensus 19 ~~~~~--s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~------------------------------------------- 52 (719)
T 1z68_A 19 FFPNW--ISGQE-YLHQSADNNIVLYNIETGQSYTIL------------------------------------------- 52 (719)
T ss_dssp CCCEE--SSSSE-EEEECTTSCEEEEESSSCCEEEEE-------------------------------------------
T ss_pred CccEE--CCCCe-EEEEcCCCCEEEEEcCCCcEEEEE-------------------------------------------
Confidence 36789 68885 555557999999999887744321
Q ss_pred EEEeecCCccceeeeeeccCCC---CCeeEEEeCCCCCEEEEE-c---------CCeEEEEeCccCceeeEEeecCCCcc
Q 010933 193 KIANVGNSVHARCQKVYPHAHD---FNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~ 259 (497)
..|. ..+.+++|+|||+.|+++ . ++.|++||+. +++....
T Consensus 53 ------------------~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-~g~~~~~-------- 105 (719)
T 1z68_A 53 ------------------SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-NGEFVRG-------- 105 (719)
T ss_dssp ------------------CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECCS--------
T ss_pred ------------------ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC-CCccccc--------
Confidence 2222 247899999999999987 5 6899999998 5544210
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc---------ccEEE
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS---------ISDIK 330 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i~~~~ 330 (497)
......+..++|+|+| +.|+++. ++.|++||+.+++.. +.... . .....+.++... ..+++
T Consensus 106 ~~l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~----~l~~~-~---~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 106 NELPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPF----QITFN-G---RENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp SCCCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCE----ECCCC-C---BTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred eecCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcE----EEecC-C---CcCCeEcccccceeeeecccCcccEE
Confidence 1112467889999999 8888875 789999999887643 11111 0 000111222222 26899
Q ss_pred EeeCCCEEEEEe-c-C---------------------------------eEEEEecCCCCcee--ee------eeecccc
Q 010933 331 FANDGQHLLSRD-Y-M---------------------------------NLKLWDIRMDSTPV--AT------FKIHEHL 367 (497)
Q Consensus 331 ~s~~g~~l~~~~-~-~---------------------------------~i~lwd~~~~~~~~--~~------~~~~~~~ 367 (497)
|||||++|++++ + + .|++||+.. ++.. .. +.+|...
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcce
Confidence 999999999864 2 1 788999875 4432 11 1223322
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CcEEEEE----cCCCCcceEEE----eccCccee-----eeE
Q 010933 368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFS----HGVGSAGGITV----EAGKNENR-----KPI 430 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~vw~----~~~~~~~~~~~----~~~~~~v~-----~~~ 430 (497)
+..++|+||++++++.... ..|.+|| +.+++.. ..+ ..|...+. .+.
T Consensus 255 ---------------~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 318 (719)
T 1z68_A 255 ---------------FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGWAGGFFVSTPV 318 (719)
T ss_dssp ---------------EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSCSSSSSCCCCE
T ss_pred ---------------EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCceEccccCCccE
Confidence 2689999998877775432 2488899 7766433 233 46777776 788
Q ss_pred eecCCCcccccccceeEeeccCc-eec--C-CCCCcccccccCCCeEEEEEecCCCEEEEEeC
Q 010933 431 LQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSYNLSSKLLHLAWHPTTNLIACANG 489 (497)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~d~~-~iw--~-~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~ 489 (497)
|+| +++. ..+++...++. .+| . .+.....+..+...+..+.++ +++.|+..+.
T Consensus 319 ~sp--dg~~---l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 319 FSY--DAIS---YYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp ECT--TSSC---EEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred ECC--CCCe---EEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEe
Confidence 998 5554 01223445555 666 2 222333444555668888877 8887776664
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=2.4e-17 Score=168.59 Aligned_cols=297 Identities=9% Similarity=0.020 Sum_probs=181.6
Q ss_pred cCCcceEEEEEcCCCCEEEEe--ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVG--DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
.|...|..++|++++-++++. +.++...||....+.. ...+..|.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~l~~~~---------- 67 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-----------------------EESALPAP---------- 67 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-----------------------EEESSCTT----------
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-----------------------cceeCCCC----------
Confidence 478899999999887777777 5688999999643321 22333343
Q ss_pred ccccee---------EEEEEecCCCCE-EEEEeC-CccEEEeecC--c-hheeccccCCCCCccccccccccccCccccC
Q 010933 108 IEEKIN---------RVRWCAAPNGSM-FILSTN-DKTIKLWKVR--D-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 173 (497)
Q Consensus 108 ~~~~i~---------~l~~~~s~~~~~-l~s~s~-d~~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (497)
..+. ...|+.+||++. |+.++. +..|.+|++. + +....+....
T Consensus 68 --~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~--------------------- 124 (662)
T 3azo_A 68 --WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS--------------------- 124 (662)
T ss_dssp --CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC---------------------
T ss_pred --ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc---------------------
Confidence 2233 456653489988 776653 4556666654 2 3322110000
Q ss_pred CCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC----------CeEEEEeC
Q 010933 174 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----------LRINLWNL 242 (497)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d----------~~i~iwd~ 242 (497)
...|...+.+++|+|||+.|+++ .+ ..|++||+
T Consensus 125 ------------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~ 168 (662)
T 3azo_A 125 ------------------------------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPL 168 (662)
T ss_dssp ------------------------------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEET
T ss_pred ------------------------------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEEC
Confidence 01155678899999999999987 55 58999999
Q ss_pred ccC-----ceeeEEeecCCCccC-CCCCCeEEEEEeCCCCcEEEEEeCC--------CeEEEEEcc-CCcccccccceec
Q 010933 243 EIS-----DQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMR-QSALCDHSARILR 307 (497)
Q Consensus 243 ~~~-----~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~v~d~~-~~~~~~~~~~~~~ 307 (497)
... +.... +. .+...+..++|+|+| +.|+.++.+ ..|++||+. +++.. .......
T Consensus 169 ~~~~~~~~~~~~~--------l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~~~~l~~ 238 (662)
T 3azo_A 169 DGSAAADRSAVRE--------LSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-DTRTLLG 238 (662)
T ss_dssp TSTTTTCGGGSEE--------SSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-EEEEEEE
T ss_pred CCCccccCCceeE--------EEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-ccEEeCC
Confidence 831 33332 33 455677889999999 888887755 379999998 45210 0002221
Q ss_pred ccccccCCccccccccccccEEEEeeCCCEEEEEec-C--eEEEEecCCCCceeeeeeecccccccccccCCCCCcccee
Q 010933 308 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 384 (497)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (497)
. |...+..+.|+|||+++++++. + .|.+||+.. ++.......+.... ......++.
T Consensus 239 ~-------------~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~~~~~ 297 (662)
T 3azo_A 239 G-------------PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFA-------GPLWTPGMR 297 (662)
T ss_dssp E-------------TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSS-------CCCCSTTCC
T ss_pred C-------------CCceEcceEECCCCeEEEEECCCCCeEEEEEECCC-Cceeeccccccccc-------CccccccCc
Confidence 1 2356889999999997766643 5 677777654 54443333322210 000111124
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 385 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 385 ~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.++|+|+++++++++. +.++||.++........+..+...+..+. ++..+... +++++.+.. .+|
T Consensus 298 ~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~-s~~~~~~~-----~~~~~~~~~~~i~ 363 (662)
T 3azo_A 298 WFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATL-TVSGTRAV-----GVAASPRTAYEVV 363 (662)
T ss_dssp SEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEE-EEETTEEE-----EEEEETTEEEEEE
T ss_pred eEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEE-ecCCCEEE-----EEEcCCCCCCEEE
Confidence 7999999999999999 99999954422222467777777776651 33212222 445554444 666
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=6.5e-16 Score=140.42 Aligned_cols=261 Identities=12% Similarity=0.163 Sum_probs=177.4
Q ss_pred ccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccc
Q 010933 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKT 91 (497)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (497)
..|.+...|+... ...++-..+.+++++|+|+++++...++.|.+||.+... +.
T Consensus 11 ~~~~~~~~~g~~g--~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~------------------------~~ 64 (286)
T 1q7f_A 11 QRMIYHCKFGEFG--VMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF------------------------KF 64 (286)
T ss_dssp EEECEEEEECCBS--SSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE------------------------EE
T ss_pred ceeEEEEeccCCC--CCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE------------------------EE
Confidence 3455556666533 334566789999999999988888889999999976421 11
Q ss_pred cc------cccCcccccccccccccceeEEEEEecCCCCEEEEEeC-CccEEEeecCchheeccccCCCCCccccccccc
Q 010933 92 EF------QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 164 (497)
Q Consensus 92 ~~------~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (497)
.+ .+|. ..+..+++. .+++.++++... ++.|.+|+. +++....
T Consensus 65 ~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~---------------- 114 (286)
T 1q7f_A 65 QFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRK---------------- 114 (286)
T ss_dssp EECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEE----------------
T ss_pred EecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEE----------------
Confidence 12 1233 457888884 245555555533 789999984 3332211
Q ss_pred cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc
Q 010933 165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 243 (497)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~ 243 (497)
+...+...+..++++++|+++++. .++.|.+||..
T Consensus 115 --------------------------------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 150 (286)
T 1q7f_A 115 --------------------------------------------FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN 150 (286)
T ss_dssp --------------------------------------------ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred --------------------------------------------ecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC
Confidence 102334567899999999988887 88999999976
Q ss_pred cCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 244 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
. +....+. ...+...+..++++|+| +++++...++.|++||... +.. ..+.. .++.
T Consensus 151 -g-~~~~~~~-----~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~~~----~~~~~-----------~g~~ 206 (286)
T 1q7f_A 151 -G-NVLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-QYL----RQIGG-----------EGIT 206 (286)
T ss_dssp -S-CEEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-CEE----EEESC-----------TTTS
T ss_pred -C-CEEEEeC-----CCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCC-CEE----EEEcc-----------CCcc
Confidence 3 3333321 12344568999999999 8777777899999999753 222 22222 0112
Q ss_pred ccccEEEEeeCCCEEEEEec-C-eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933 324 ASISDIKFANDGQHLLSRDY-M-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 401 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~~-~-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 401 (497)
..+..++++++|+++++... + .|++||.. ++.+..+..+.... . ..+++++|+|+++++ +.|
T Consensus 207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~----------~---~~~i~~~~~g~l~vs-~~~ 270 (286)
T 1q7f_A 207 NYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA----------Q---CFDVALMDDGSVVLA-SKD 270 (286)
T ss_dssp CSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS----------C---EEEEEEETTTEEEEE-ETT
T ss_pred CCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC----------c---ceeEEECCCCcEEEE-CCC
Confidence 45788999999988888754 4 99999964 67777776554321 0 158999999987777 679
Q ss_pred CcEEEEEcCCC
Q 010933 402 NLLRIFSHGVG 412 (497)
Q Consensus 402 g~i~vw~~~~~ 412 (497)
++|++|++...
T Consensus 271 ~~v~v~~~~~~ 281 (286)
T 1q7f_A 271 YRLYIYRYVQL 281 (286)
T ss_dssp TEEEEEECSCC
T ss_pred CeEEEEEcccc
Confidence 99999998654
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=2.2e-16 Score=163.13 Aligned_cols=278 Identities=9% Similarity=0.058 Sum_probs=170.7
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
....+++| ++|+++++++ |+.|++|++.+++...+.....
T Consensus 17 ~~~~~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~------------------------------------ 56 (740)
T 4a5s_A 17 LKLYSLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENST------------------------------------ 56 (740)
T ss_dssp CCCCCEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTT------------------------------------
T ss_pred ccccccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechh------------------------------------
Confidence 34678999 6888888876 9999999999887543211100
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCccCceeeEEeecCCCcc
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~ 259 (497)
...+.....+++|||||+.|+.+ .+ +.+.+||+. +++... +
T Consensus 57 --------------------~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~-~~~~~~--------l 107 (740)
T 4a5s_A 57 --------------------FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-KRQLIT--------E 107 (740)
T ss_dssp --------------------TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECC--------S
T ss_pred --------------------hhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-CCcEEE--------c
Confidence 01112233458899999999987 54 667899999 555433 5
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc---------ccccEEE
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---------ASISDIK 330 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~ 330 (497)
..+...+..++|+|+| +.||.+ .++.|++||+.+++... -...+ .....+.++. +....+.
T Consensus 108 ~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~---lt~~g-----~~~~~~~g~~~~v~~ee~~~~~~~~~ 177 (740)
T 4a5s_A 108 ERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYR---ITWTG-----KEDIIYNGITDWVYEEEVFSAYSALW 177 (740)
T ss_dssp SCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEE---CCSCC-----BTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred ccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEE---EcCCC-----CccceecCcccccccchhcCCCcceE
Confidence 5677889999999999 888887 46899999998876431 00111 0001112222 2234689
Q ss_pred EeeCCCEEEEEe-c-C-----------------------------------eEEEEecCC---CCc-eeeeeee------
Q 010933 331 FANDGQHLLSRD-Y-M-----------------------------------NLKLWDIRM---DST-PVATFKI------ 363 (497)
Q Consensus 331 ~s~~g~~l~~~~-~-~-----------------------------------~i~lwd~~~---~~~-~~~~~~~------ 363 (497)
|||||++||.++ | + .|++||+.+ +.. ....+..
T Consensus 178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~ 257 (740)
T 4a5s_A 178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI 257 (740)
T ss_dssp ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence 999999998863 2 4 355555542 110 1112211
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeC----CCcEEEEEcCCCC----cc-eEEE--eccCccee-----
Q 010933 364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGS----AG-GITV--EAGKNENR----- 427 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----dg~i~vw~~~~~~----~~-~~~~--~~~~~~v~----- 427 (497)
+... +..++|+|||+.++.... +..|++||+.+++ .. ...+ +.|...+.
T Consensus 258 ~~~~---------------~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 258 GDHY---------------LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp SCEE---------------EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred CCeE---------------EEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 2111 268999999997765543 3479999999886 11 1222 55666555
Q ss_pred eeEeecCCCccccccccee-Eee-ccCc-eec---CCCCCcccccccCCCeEEEEEecCCCEEEEEeC
Q 010933 428 KPILQAAPRARRSSLSNLT-RGL-YRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTNLIACANG 489 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~-~~~-~d~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~ 489 (497)
.+.|+| |++. ++ ..+ .+|. .|| ..+.....+......|..+. .+|++.|+..+.
T Consensus 323 ~p~fsp--DG~~-----l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~ 382 (740)
T 4a5s_A 323 EPHFTL--DGNS-----FYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISN 382 (740)
T ss_dssp CCEECT--TSSE-----EEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEES
T ss_pred CceEcC--CCCE-----EEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEEe
Confidence 788988 6655 55 554 4444 666 23333344444555666654 355776665543
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=2.1e-16 Score=149.06 Aligned_cols=237 Identities=10% Similarity=-0.006 Sum_probs=142.2
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecC-chheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..+..++| +|++++|++++.+ .|.+|++. +++......
T Consensus 40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-------------------------------------- 78 (365)
T 1jof_A 40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-------------------------------------- 78 (365)
T ss_dssp CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE--------------------------------------
T ss_pred CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeE--------------------------------------
Confidence 35788999 7899999998887 89999986 555322100
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCE--EEEE--------------cCCeEEEEeCccCceeeEEe
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSA--------------DDLRINLWNLEISDQCFNIV 252 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~--------------~d~~i~iwd~~~~~~~~~~~ 252 (497)
. ..+ ..+..++|+|+|+. ++++ .++.+.+|++...+.....+
T Consensus 79 --------------------~-~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~ 136 (365)
T 1jof_A 79 --------------------H-PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV 136 (365)
T ss_dssp --------------------E-ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE
T ss_pred --------------------e-ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE
Confidence 0 011 12445788999985 3333 47899999997444433321
Q ss_pred ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEcc-CCcccccccceecccccccCCccccccccccccEEE
Q 010933 253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
... ...+...+.+++|+|+| ++|+++.. ++.|++||+. +++... ...+.. ..|...+..++
T Consensus 137 ~~~---~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~--~~~~~~-----------~~~g~~p~~~~ 199 (365)
T 1jof_A 137 QNY---EYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVEL--VGSVDA-----------PDPGDHPRWVA 199 (365)
T ss_dssp EEE---ECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEE--EEEEEC-----------SSTTCCEEEEE
T ss_pred eeE---EeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEE--eeeEec-----------CCCCCCCCEeE
Confidence 100 01245678999999999 87777654 6899999998 664321 011110 00124578999
Q ss_pred EeeCCCEEEEEe--cCeEEEEecCC-CCcee---eeeeecccccccccccCCCCC----ccceeEEE-EcCCCCEEEEEe
Q 010933 331 FANDGQHLLSRD--YMNLKLWDIRM-DSTPV---ATFKIHEHLRPKLCDLYNNDS----IFDKFECS-VSGDGLHFATGS 399 (497)
Q Consensus 331 ~s~~g~~l~~~~--~~~i~lwd~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~s~~~~~l~s~~ 399 (497)
|+|+|++++++. ++.|.+|++.. .++.. ..+....... ..... ......++ |+|||++|++++
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI------PDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC------CCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc------CCcccccccccccccEEEECCCCCEEEEEC
Confidence 999999988764 38999998753 14432 1221110000 00000 00125899 999999988776
Q ss_pred CCC------cEEEEEcC-CCCcceE---EEeccCcceeeeEeec
Q 010933 400 YSN------LLRIFSHG-VGSAGGI---TVEAGKNENRKPILQA 433 (497)
Q Consensus 400 ~dg------~i~vw~~~-~~~~~~~---~~~~~~~~v~~~~~~~ 433 (497)
.+. .|.+|++. +++ +.. ....+......++++|
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEE
T ss_pred CCCCCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecC
Confidence 532 89999996 443 212 1222333445555655
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=1.8e-16 Score=148.47 Aligned_cols=288 Identities=9% Similarity=-0.017 Sum_probs=166.8
Q ss_pred cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecC
Q 010933 120 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 199 (497)
Q Consensus 120 s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (497)
++++.++++++.++.|.+||+.+++......
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~------------------------------------------------- 38 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCV------------------------------------------------- 38 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEE-------------------------------------------------
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEe-------------------------------------------------
Confidence 5677888999999999999998876433210
Q ss_pred CccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCc
Q 010933 200 SVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 277 (497)
Q Consensus 200 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 277 (497)
.+....+..++|+|+|+.++ ++ .++.|.+||+. .++....+..... .......+..++|+|+| +
T Consensus 39 -----------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~~~~~~~~~~~-~~~~~~~~~~~~~spdg-~ 104 (349)
T 1jmx_B 39 -----------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHANLSSV-PGEVGRSMYSFAISPDG-K 104 (349)
T ss_dssp -----------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEESCCS-TTEEEECSSCEEECTTS-S
T ss_pred -----------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCcEEEEEEcccc-cccccccccceEECCCC-C
Confidence 11112467899999998665 45 78999999998 4554443221100 00002347789999999 8
Q ss_pred EEEEEeCC------------CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCe
Q 010933 278 LLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 345 (497)
Q Consensus 278 ~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 345 (497)
+|++++.+ +.|.+||+.+++... ....+.. ...+.+++|+|+|+ ++++ .+.
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~s~dg~-l~~~-~~~ 167 (349)
T 1jmx_B 105 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFPM--------------PRQVYLMRAADDGS-LYVA-GPD 167 (349)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEEC--------------CSSCCCEEECTTSC-EEEE-SSS
T ss_pred EEEEEcccccccccccccCCCeEEEEECCCccccc-eeeeccC--------------CCcccceeECCCCc-EEEc-cCc
Confidence 88888865 899999998865321 1122221 23588999999999 5554 345
Q ss_pred EEEEecCCCCceeeeeeecccccccc--------cccCCCCCc-cceeEEEEcCCCCEEEEEeCC-CcEEEEEcCCCCcc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKL--------CDLYNNDSI-FDKFECSVSGDGLHFATGSYS-NLLRIFSHGVGSAG 415 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~s~~~~~l~s~~~d-g~i~vw~~~~~~~~ 415 (497)
|++||+.+ ++.+..+..+....... ......... .....+++++++......... ..+..++..+++..
T Consensus 168 i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
T 1jmx_B 168 IYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 246 (349)
T ss_dssp EEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred EEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE
Confidence 99999986 77766665432100000 000000000 011346666654321111111 11222555554433
Q ss_pred eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC-CcccccccCCCeEEEEEecCCCEEEEEe-CCce
Q 010933 416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSL 492 (497)
Q Consensus 416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~-~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~ 492 (497)
...+..+...+..++++|. +++. ++++ ++. .+|.... ...........+.+++|+|++++|++++ ++.+
T Consensus 247 ~~~~~~~~~~~~~~~~sp~-dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v 318 (349)
T 1jmx_B 247 TQEFADLTELYFTGLRSPK-DPNQ-----IYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 318 (349)
T ss_dssp EEEEEECSSCEEEEEECSS-CTTE-----EEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred ecccccCCCcceeeEecCC-CCCE-----EEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeE
Confidence 3334445566778888872 3333 5555 555 8883322 2222233445677999999999888766 5568
Q ss_pred EEEe
Q 010933 493 FFHY 496 (497)
Q Consensus 493 ~i~~ 496 (497)
++|.
T Consensus 319 ~v~d 322 (349)
T 1jmx_B 319 AVFN 322 (349)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8886
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=2.1e-16 Score=150.80 Aligned_cols=291 Identities=11% Similarity=0.049 Sum_probs=173.3
Q ss_pred ceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 34 IVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
.+.+++|||||++||..... ..|.+||+.+++. ..+..+.. .
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------------~~l~~~~~-----------~ 81 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------------VQLTEGKG-----------D 81 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE------------------------EECCCSSC-----------B
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE------------------------EEeecCCC-----------C
Confidence 37788999999998877543 3788889877642 11222220 2
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC-ccc-------------cCCCC
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN-FMN-------------EHNPP 176 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~ 176 (497)
....+.| +||++.|+.++.++.|.+|++.+++...+...... ..+.+. +.. ....+
T Consensus 82 ~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~~~~~sp 151 (396)
T 3c5m_A 82 NTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEILKRDWQP 151 (396)
T ss_dssp CTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred ccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCccccccccccccCC
Confidence 2233678 78999999999999999999988775544332211 011111 111 22344
Q ss_pred Cccccccccc---ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cC------CeEEEEeCccC
Q 010933 177 SFAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINLWNLEIS 245 (497)
Q Consensus 177 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d------~~i~iwd~~~~ 245 (497)
+...++.... .....+.+|++... +.... ..+...+..+.|+| +++.|+.. .+ ..|.+||+. +
T Consensus 152 dg~~~~~~~~~~~~~~~~l~~~d~~~g---~~~~~--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~ 225 (396)
T 3c5m_A 152 LTSWEKFAEFYHTNPTCRLIKVDIETG---ELEVI--HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-G 225 (396)
T ss_dssp CCSHHHHHHHHHTCCCEEEEEEETTTC---CEEEE--EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-S
T ss_pred CCcceeeeeeccCCCcceEEEEECCCC---cEEee--ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC-C
Confidence 4444433321 23457888887643 23222 24567789999999 78877764 32 468888886 3
Q ss_pred ceeeEEeecCCCccCCC--CCCeEEEEEeCCCCcEEEEEeCC-----CeEEEEEccCCcccccccceecccccccCCccc
Q 010933 246 DQCFNIVDMKPSNMDDL--TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSF 318 (497)
Q Consensus 246 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (497)
+.... +..+ ...+..++|+|+| +.|+.++.+ +.|++||+.+++.. .....
T Consensus 226 ~~~~~--------l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~---------- 282 (396)
T 3c5m_A 226 SNVRK--------IKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENE----EVMVM---------- 282 (396)
T ss_dssp CCCEE--------SSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEE----EEEEC----------
T ss_pred CceeE--------eeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeE----EeeeC----------
Confidence 33322 2222 2357889999999 766666543 45999999877532 11111
Q ss_pred cccccccccEEEEee-CCCEEEEEe-----------------cCeEEEEecCCCCceeeeeeecccccccccccCCCCCc
Q 010933 319 FTEIIASISDIKFAN-DGQHLLSRD-----------------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380 (497)
Q Consensus 319 ~~~~~~~i~~~~~s~-~g~~l~~~~-----------------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (497)
.... +.|+| +|++++++. +..|++||+.. ++. ..+..+...... +..+..
T Consensus 283 -----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~----~~~~~~ 350 (396)
T 3c5m_A 283 -----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDV----LDGDRQ 350 (396)
T ss_dssp -----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCC----BTTBSS
T ss_pred -----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCcccc----cccccc
Confidence 1122 88999 999888742 27899999975 443 344444321000 000000
Q ss_pred cceeEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 010933 381 FDKFECSVSGDGLHFATGSY-SNLLRIFSHG 410 (497)
Q Consensus 381 ~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~ 410 (497)
.....++|+|||+.|+.++. ++...||.++
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 00146899999998887765 5555555443
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1.8e-15 Score=140.34 Aligned_cols=258 Identities=11% Similarity=0.079 Sum_probs=170.4
Q ss_pred cceEEEEEcCCCCEEEEeecC------------------------CeEEEEEecCCccccchhhhhhhcccCCCCCCccc
Q 010933 33 DIVSAIEFDKTGDYLAVGDRG------------------------GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYR 88 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (497)
+.+.+++++|+|+++++...+ +.|.+||..+++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------- 81 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------- 81 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence 679999999999999888777 4689999876643
Q ss_pred cccccc-ccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchh-eeccccCCCCCccccccccccc
Q 010933 89 YKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAE 166 (497)
Q Consensus 89 ~~~~~~-~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
+..+. ++- .....+++ ++++.++++...++.|++|+..... ...........
T Consensus 82 -~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~----------- 135 (329)
T 3fvz_A 82 -LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP----------- 135 (329)
T ss_dssp -EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-----------
T ss_pred -EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-----------
Confidence 22222 222 46789999 6888888888889999999986542 11100000000
Q ss_pred cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE--cCCeEEEEeCc
Q 010933 167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA--DDLRINLWNLE 243 (497)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~--~d~~i~iwd~~ 243 (497)
-.-.++......++++| +++++++. .++.|++|+..
T Consensus 136 -----------------------------------------g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~ 174 (329)
T 3fvz_A 136 -----------------------------------------GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS 174 (329)
T ss_dssp -----------------------------------------CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT
T ss_pred -----------------------------------------CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC
Confidence 00023445688999999 78888876 48999999954
Q ss_pred cCceeeEEeecCCC---ccCCCCCCeEEEEEeCC-CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccc
Q 010933 244 ISDQCFNIVDMKPS---NMDDLTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 319 (497)
Q Consensus 244 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (497)
+.....+..... ...++-.....++++|+ + .++++...++.|++||..+++.. ..+..
T Consensus 175 --g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~~G~~~----~~~~~----------- 236 (329)
T 3fvz_A 175 --GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTDTKEFV----REIKH----------- 236 (329)
T ss_dssp --SCEEEEECEECCSSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCEE----EEECC-----------
T ss_pred --CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECCCCcEE----EEEec-----------
Confidence 444443211100 00123345799999998 6 77777788999999999877654 33322
Q ss_pred ccccccccEEEEeeCCCEEEEE-------e-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933 320 TEIIASISDIKFANDGQHLLSR-------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 391 (497)
Q Consensus 320 ~~~~~~i~~~~~s~~g~~l~~~-------~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 391 (497)
..+...+..++++| +..+++. . ...|++||+.+ ++.+..+...... ......++++|+
T Consensus 237 ~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~------------~~~p~~ia~~~d 302 (329)
T 3fvz_A 237 ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKH------------FDMPHDIVASED 302 (329)
T ss_dssp TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSC------------CSSEEEEEECTT
T ss_pred cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCc------------cCCeeEEEECCC
Confidence 11224577888888 3333322 1 25899999986 7777776421110 001268999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 010933 392 GLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 392 ~~~l~s~~~dg~i~vw~~~~ 411 (497)
|.++++...+++|++|++..
T Consensus 303 G~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SEEEEEESSSCCEEEEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCc
Confidence 98888888999999999864
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=5.7e-16 Score=147.43 Aligned_cols=276 Identities=12% Similarity=0.056 Sum_probs=151.1
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...+..++|||||++|+.++.++.|++||+.+++. ...+..+. ..
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~-----------------------~~~~~~~~------------~~ 124 (388)
T 3pe7_A 80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE-----------------------NVVYQVPA------------EW 124 (388)
T ss_dssp CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEECCT------------TE
T ss_pred CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------------eeeeechh------------hc
Confidence 33444678999999999999999999999988753 12223333 43
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
+....|..++++.+++....++ ....... . ...+...........
T Consensus 125 ~~~~~~~~~~dg~~l~~~~~~~---------~~~~~~~-----~---------------------~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 125 VGYGTWVANSDCTKLVGIEIRR---------EDWVPLT-----D---------------------WKKFHEFYFTKPCCR 169 (388)
T ss_dssp EEEEEEEECTTSSEEEEEEEEG---------GGCCCCC-----S---------------------HHHHHHHGGGCCCEE
T ss_pred ccccceeECCCCCeeccccccC---------ccccccc-----c---------------------cchhhhhhccCCcce
Confidence 5455554478888876532110 0000000 0 000000000001234
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-c------CCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
+.+|++... +.... ..+...+..++|+| +|+.|+.. . ...|.++|.. ++.... +..+.
T Consensus 170 l~~~d~~~g---~~~~l--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~~~~--------l~~~~ 235 (388)
T 3pe7_A 170 LMRVDLKTG---ESTVI--LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED-GTNMRK--------VKTHA 235 (388)
T ss_dssp EEEEETTTC---CEEEE--EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT-SCCCEE--------SCCCC
T ss_pred EEEEECCCC---ceEEe--ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC-CCceEE--------eeeCC
Confidence 555555432 12221 34556788999999 99998876 4 2377788876 333322 22333
Q ss_pred --CCeEEEEEeCCCCcEEEEEeC-CC----eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933 264 --EVITSAEFHPIYCNLLAYSSS-RG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 336 (497)
Q Consensus 264 --~~i~~~~~~~~~~~~l~~~~~-dg----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 336 (497)
..+..++|+|+| +.|+..+. ++ .|++||+.+++... +..+..+. ........+.|+|||+
T Consensus 236 ~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~~--l~~~~~~~----------~~~~~~~~~~~spdg~ 302 (388)
T 3pe7_A 236 EGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENRQ--LTSMPACS----------HLMSNYDGSLMVGDGS 302 (388)
T ss_dssp TTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEEE--EEEECCEE----------EEEECTTSSEEEEEEC
T ss_pred CCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceEE--EEcCCCce----------eeeecCCCCeEccCCC
Confidence 357789999999 66655443 22 39999999876320 01111100 0000123347999999
Q ss_pred EEEEE---------e-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEE
Q 010933 337 HLLSR---------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR 405 (497)
Q Consensus 337 ~l~~~---------~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~ 405 (497)
.|+.. . +..|++||+.. ++ +..+..+......+ + .+....+..++|+|||+.|+..+ .+|...
T Consensus 303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~~---~-~~~~~~~~~~~~spDg~~l~~~s~~~g~~~ 376 (388)
T 3pe7_A 303 DAPVDVQDDSGYKIENDPFLYVFNMKN-GT-QHRVARHDTSWKVF---E-GDRQVTHPHPSFTPDDKQILFTSDVHGKPA 376 (388)
T ss_dssp CC------------CCCCEEEEEETTT-TE-EEEEEECCCCCCCB---T-TBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred cceeEeeeccccccCCCCEEEEEeccC-Cc-eEEeccccCccccc---c-cccccCCCCccCCCCCCEEEEEecCCCcee
Confidence 88753 2 36899999975 44 44555444310000 0 00000014789999999888666 477777
Q ss_pred EEEcC
Q 010933 406 IFSHG 410 (497)
Q Consensus 406 vw~~~ 410 (497)
||.++
T Consensus 377 l~~~~ 381 (388)
T 3pe7_A 377 LYLAT 381 (388)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77654
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=1.5e-14 Score=135.79 Aligned_cols=302 Identities=10% Similarity=0.022 Sum_probs=187.6
Q ss_pred CCCEEEEee------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933 43 TGDYLAVGD------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 116 (497)
Q Consensus 43 ~g~~lasg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~ 116 (497)
+++++.+.. .|+.|.+||..+++. +..+..+. .+ .++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~-----------------------~~~i~~g~------------~p--~i~ 56 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF-----------------------LGMVPTAF------------NG--HVQ 56 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCE-----------------------EEEEECCE------------EE--EEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeE-----------------------EEEecCCC------------CC--ceE
Confidence 556665543 478999999887643 34454444 44 788
Q ss_pred EEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 117 WCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 117 ~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
| +||++++++++ .++.|.+||..+.+...........
T Consensus 57 ~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~------------------------------- 103 (361)
T 2oiz_A 57 V--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR------------------------------- 103 (361)
T ss_dssp E--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB-------------------------------
T ss_pred E--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc-------------------------------
Confidence 8 78999999886 3678999998766543321100000
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCccCceeeEE-eecCCCccCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSNMDDL 262 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~ 262 (497)
..+......++++|+|++|+++ . ++.|.+||+. .++.... +. .
T Consensus 104 ------------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~--------~ 150 (361)
T 2oiz_A 104 ------------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA-KGDYVEDVTA--------A 150 (361)
T ss_dssp ------------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT-TTEEEEEEGG--------G
T ss_pred ------------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC-CCcEEEEEec--------C
Confidence 1123456679999999999887 3 6899999999 4555443 31 1
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
.....+.+.|++...+++.+.||.+.+|++.. ++... ... . ...+.....+ ..+.+++++..++..
T Consensus 151 -~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~----~~~--~-----~~~~~~~~~~-~~~~~~~~g~~~~~~ 217 (361)
T 2oiz_A 151 -AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS----QSR--S-----KQMFSVKDDP-IFIAPALDKDKAHFV 217 (361)
T ss_dssp -TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE----EEE--C-----CCCSCTTTSC-BCSCCEECSSEEEEE
T ss_pred -CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee----ecc--c-----cceEcCCCCc-eEEEecccCCEEEEE
Confidence 11233567787656788889999999999865 33220 000 0 0001111112 233446777766665
Q ss_pred ec-CeEEEEecCCCCc-eeeeeeecc------cccccccccCCCCCccceeEEEEcCCCCEEEEEeC-----------CC
Q 010933 342 DY-MNLKLWDIRMDST-PVATFKIHE------HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-----------SN 402 (497)
Q Consensus 342 ~~-~~i~lwd~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-----------dg 402 (497)
+. +.+.++|+..+.. ....+.... ...+ .....++|+|+++.++++.. ++
T Consensus 218 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-----------~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 218 SYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP-----------GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp BTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE-----------CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred eCCCeEEEEEecCCCceecccccccCcccccccccc-----------CCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 44 8999999864221 112221110 0000 00023899999888877643 35
Q ss_pred cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC--CC--CCcccccccCCCeEEEEE
Q 010933 403 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SS--GHHELSYNLSSKLLHLAW 477 (497)
Q Consensus 403 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~--~~--~~~~~~~~~~~~i~~l~~ 477 (497)
.|.+||+.+++. ...+..+. ...++++| +++. |++++. +. .+|. ++ +..............+++
T Consensus 287 ~v~viD~~t~~~-v~~i~~~~--p~~ia~sp--dg~~-----l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 287 EIWVMDTKTKQR-VARIPGRD--ALSMTIDQ--QRNL-----MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp EEEEEETTTTEE-EEEEECTT--CCEEEEET--TTTE-----EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred eEEEEECCCCcE-EEEEecCC--eeEEEECC--CCCE-----EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence 899999999854 47777776 89999999 6666 666666 66 9993 33 333333456677789999
Q ss_pred ecCCC
Q 010933 478 HPTTN 482 (497)
Q Consensus 478 ~p~~~ 482 (497)
+|+|.
T Consensus 356 ~p~G~ 360 (361)
T 2oiz_A 356 HPVGG 360 (361)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99985
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=5.8e-15 Score=138.52 Aligned_cols=275 Identities=9% Similarity=0.022 Sum_probs=170.3
Q ss_pred EEEEcCCCCEEEEeec----------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 37 AIEFDKTGDYLAVGDR----------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 37 ~i~~sp~g~~lasg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
.++|+|||++|++++. ++.|.+||..+.+. +.++...... .
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-----------------------~~~i~~~~~~------~ 104 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-----------------------EKEISLPPKR------V 104 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-----------------------EEEEEECTTB------C
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-----------------------EEEEEcCccc------c
Confidence 8999999999998863 67899999877543 2222211000 0
Q ss_pred ccccceeEEEEEecCCCCEEEEEeC--CccEEEeecCchheecc-ccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~--d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
........+++ +|++++|+++.. ++.|.+||+.+++.... ..
T Consensus 105 ~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--------------------------------- 149 (361)
T 2oiz_A 105 QGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--------------------------------- 149 (361)
T ss_dssp CBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG---------------------------------
T ss_pred ccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec---------------------------------
Confidence 00033567888 789999998863 68999999988764321 10
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (497)
. .....+.+.|++ ..+++. .||.+.+|+....++........ ..+..
T Consensus 150 -----------------------------~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~-~~~~~ 198 (361)
T 2oiz_A 150 -----------------------------A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSK-QMFSV 198 (361)
T ss_dssp -----------------------------G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECC-CCSCT
T ss_pred -----------------------------C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecccc-ceEcC
Confidence 0 011224455654 445555 78888888876434433211100 01222
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
...++ .+.+++++ ..++..+.++.+.++|+....... ...+........ ...+ .......++|+|+++.++++
T Consensus 199 ~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~-~~~~--~p~g~~~~a~~~dg~~lyv~ 271 (361)
T 2oiz_A 199 KDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDEDK-AKNW--VPGGYNLVGLHRASGRMYVF 271 (361)
T ss_dssp TTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHHHH-HTTC--EECCSSCEEEETTTTEEEEE
T ss_pred CCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcccc-cccc--ccCCeeEEEEecCCCeEEEE
Confidence 22222 33346777 677778889999999997553210 011110000000 0000 00123347899998877765
Q ss_pred -e-----------cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933 342 -D-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 342 -~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
. .+.|.+||+.+ .+.+.++..+. . .+++|+|||++|++++. +.|.+||.
T Consensus 272 ~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 272 MHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp EESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred EccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 3 14899999987 88888888776 3 58999999999998887 99999999
Q ss_pred CCC--CcceEEEeccCcceeeeEeec
Q 010933 410 GVG--SAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 410 ~~~--~~~~~~~~~~~~~v~~~~~~~ 433 (497)
.++ +.+ ..+..+....+.++++|
T Consensus 333 ~t~~l~~~-~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 333 SQPEPKLL-RTIEGAAEASLQVQFHP 357 (361)
T ss_dssp SSSSCEEE-EEETTSCSSEEEEEECC
T ss_pred CCCcceee-EEeccCCCCcEEEEecC
Confidence 987 444 55555666667888887
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=3.9e-15 Score=138.51 Aligned_cols=244 Identities=13% Similarity=0.108 Sum_probs=161.7
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
..|.+++|+|++..++..+.++.++.|... ....+..+. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~------------~~~ 47 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE--------------------------PWLEISKKG------------LQL 47 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE--------------------------EEEEEESSC------------CCE
T ss_pred cccceeeecCCccceeEEeecccCcccccc--------------------------eeEEEeccC------------ccc
Confidence 457888999998888777778888988321 133444555 567
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
.+++| ++++++++++..++.|.+||..+++.....
T Consensus 48 ~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~------------------------------------------- 82 (333)
T 2dg1_A 48 EGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF------------------------------------------- 82 (333)
T ss_dssp EEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------------------------------
T ss_pred cCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe-------------------------------------------
Confidence 89999 688887778888999999998876633210
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC----CeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
..+...+.+++++++|+++++. .+ +.|.+||.+ ++.....+. ...+...+.
T Consensus 83 ------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~-~~~~~~~~~-----~~~~~~~~~ 138 (333)
T 2dg1_A 83 ------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIE-----DLSTAYCID 138 (333)
T ss_dssp ------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEEC-----SSSSCCCEE
T ss_pred ------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC-CCEEEEEEc-----cCccCCccc
Confidence 1334578999999999988887 55 689999988 443332211 112446789
Q ss_pred EEEEeCCCCcEEEEEeC------CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 268 SAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
.++++|+| .++++... .+.|..+|..+++.. ..... ......++|+|+|++|+.+
T Consensus 139 ~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~--------------~~~~~~i~~~~dg~~l~v~ 199 (333)
T 2dg1_A 139 DMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQN--------------ISVANGIALSTDEKVLWVT 199 (333)
T ss_dssp EEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEE--------------ESSEEEEEECTTSSEEEEE
T ss_pred ceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE----EeecC--------------CCcccceEECCCCCEEEEE
Confidence 99999999 77776553 355666666544321 11111 1346889999999876655
Q ss_pred e--cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 342 D--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 342 ~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
. ++.|.+||+...+..+..+...... ... .......++++++|+++++...++.|.+||.+
T Consensus 200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~---~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 200 ETTANRLHRIALEDDGVTIQPFGATIPY-----YFT---GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC---SSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eCCCCeEEEEEecCCCcCcccccceEEE-----ecC---CCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 3 3899999996434433322100000 000 00011579999999988888888999999974
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=4.3e-15 Score=151.82 Aligned_cols=210 Identities=13% Similarity=0.018 Sum_probs=132.7
Q ss_pred CCCCCE-EEEE--cCCeEEEEeCcc-C-ceeeEEeecCCCccCC-----CCCCeEEEEEeCCCCcEEEEEeCC-------
Q 010933 223 NSDCET-FVSA--DDLRINLWNLEI-S-DQCFNIVDMKPSNMDD-----LTEVITSAEFHPIYCNLLAYSSSR------- 285 (497)
Q Consensus 223 ~~~~~~-l~~~--~d~~i~iwd~~~-~-~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~d------- 285 (497)
||||+. |+.+ .+..|+++++.. + +.... +.. |...+..++|+|+| +.|++++.+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~--------l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--------LTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE--------CSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTT
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe--------ccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCC
Confidence 499998 7776 356666666540 1 32222 233 56778899999999 889888876
Q ss_pred ---CeEEEEEccC------Ccccccccceec-ccccccCCccccccccccccEEEEeeCCCEEEEEe-c--------CeE
Q 010933 286 ---GFVRLVDMRQ------SALCDHSARILR-DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNL 346 (497)
Q Consensus 286 ---g~i~v~d~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~--------~~i 346 (497)
..|++||+.+ ++. +.+. . +...+..++|||||++|+.++ + ..|
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~-----~~l~~~-------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAV-----RELSDD-------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGS-----EESSCS-------------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CceeEEEEEECCCCccccCCce-----eEEEec-------------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 5899999987 432 2221 1 124577899999999998764 3 379
Q ss_pred EEEecCCCC---ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC--cEEEEEcCCCCcceEEEec
Q 010933 347 KLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAGGITVEA 421 (497)
Q Consensus 347 ~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg--~i~vw~~~~~~~~~~~~~~ 421 (497)
++||+...+ +.......+...+ ..+.|+|||+++++++.++ .|++||+.+++. ..+..
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~---------------~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--~~l~~ 282 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAI---------------AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--TQLCR 282 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCE---------------EEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--EESSC
T ss_pred EEEEECCCCcccccEEeCCCCCceE---------------cceEECCCCeEEEEECCCCCeEEEEEECCCCce--eeccc
Confidence 999997324 3333333333322 5899999999888888888 566666655532 23332
Q ss_pred cCcc---------eeeeEeecCCCcccccccceeEeeccCc-eec--CC-CCCcccccccCCCeEEEEEecCCCEEE
Q 010933 422 GKNE---------NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SS-SGHHELSYNLSSKLLHLAWHPTTNLIA 485 (497)
Q Consensus 422 ~~~~---------v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~-~~~~~~~~~~~~~i~~l~~~p~~~~la 485 (497)
+... +..+++++ ++++ ++++.. +. ++| .. ++....+..+...+..+ |+++++.++
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~--~~~~-----~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~ 350 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLA--NGLI-----AVVHGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAV 350 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECT--TSCE-----EEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEE
T ss_pred ccccccCccccccCceEeEeC--CCEE-----EEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEE
Confidence 3222 34566665 4555 777777 77 999 32 23344445556667666 255565444
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=8.2e-14 Score=126.46 Aligned_cols=203 Identities=9% Similarity=0.096 Sum_probs=139.0
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..+.++++ ++++.++++...++.|.+|+... +.........
T Consensus 30 ~~p~~v~~--~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~------------------------------------ 70 (286)
T 1q7f_A 30 TEPSGVAV--NAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECG------------------------------------ 70 (286)
T ss_dssp SCEEEEEE--CTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBS------------------------------------
T ss_pred CCCceEEE--CCCCCEEEEECCCCEEEEECCCC-cEEEEecccC------------------------------------
Confidence 56889999 67888888888899999999763 3221100000
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEe-CCCCCEEEEE-c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
...++...+..+++ .++++++++. . ++.|.+||.. ++....+ ...+...+
T Consensus 71 -------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~~~~~~------~~~~~~~~ 123 (286)
T 1q7f_A 71 -------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKF------GATILQHP 123 (286)
T ss_dssp -------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEE------CTTTCSCE
T ss_pred -------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--CcEEEEe------cCccCCCc
Confidence 00244556889999 5788777777 4 8999999954 4444432 12344578
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~ 345 (497)
..++++|+| +++++...++.|.+||.. ++.. ..+.. ..+...+..++++|+|+++++.. ++.
T Consensus 124 ~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~----~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 124 RGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp EEEEECTTS-CEEEEETTTTEEEEECTT-SCEE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred eEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEE----EEeCC-----------CCccCCcEEEEECCCCCEEEEECCCCE
Confidence 999999999 888877788999999965 3322 22221 01124578999999998777765 499
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-cEEEEEcC
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHG 410 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~i~vw~~~ 410 (497)
|++||.. ++.+..+..+.... ....++++++|+++++...++ .|.+|+..
T Consensus 187 i~~~~~~--g~~~~~~~~~g~~~-------------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 187 VKVFNYE--GQYLRQIGGEGITN-------------YPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEEEETT--CCEEEEESCTTTSC-------------SEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred EEEEcCC--CCEEEEEccCCccC-------------CCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 9999974 56666664332100 115899999999888888886 99999954
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.66 E-value=3.3e-14 Score=129.81 Aligned_cols=241 Identities=8% Similarity=-0.014 Sum_probs=165.5
Q ss_pred CCcceEEEEEcCCCC-EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 31 h~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+.....+++|+|+|+ +++++..++.|..|+..++ . ..+..+.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~------------ 68 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS------------ 68 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC------------
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC------------
Confidence 456778999999998 7788888999999998764 2 2333444
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..+.++++ ++++.++++...++.|.+||..+++...+...
T Consensus 69 ~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~-------------------------------------- 108 (296)
T 3e5z_A 69 HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADS-------------------------------------- 108 (296)
T ss_dssp SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECE--------------------------------------
T ss_pred CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeec--------------------------------------
Confidence 66899999 68888877777778999999877664332100
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE----E-c-------------CCeEEEEeCccCceeeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCFNI 251 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~-~-------------d~~i~iwd~~~~~~~~~~ 251 (497)
........+..++++|+|+++++ | . .+.|..++.. +....
T Consensus 109 -------------------~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~- 166 (296)
T 3e5z_A 109 -------------------FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSA- 166 (296)
T ss_dssp -------------------ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEE-
T ss_pred -------------------cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEE-
Confidence 00111235678999999998887 3 1 2455555544 33222
Q ss_pred eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc-CCcccccccceecccccccCCccccccccccccEEE
Q 010933 252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
+..+......++|+|++ +.+++.+.++.|.+||+. .++... ..+.+.. +...+..++
T Consensus 167 -------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~-~~~~~~~-------------~~~~p~~i~ 224 (296)
T 3e5z_A 167 -------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEY-QGVHFTV-------------EPGKTDGLR 224 (296)
T ss_dssp -------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEE-EEEEECC-------------SSSCCCSEE
T ss_pred -------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcC-CCeEeeC-------------CCCCCCeEE
Confidence 22345567899999999 777777778999999997 443200 0122211 124567899
Q ss_pred EeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE-cCCCCEEEEEeCCCcEEEEEc
Q 010933 331 FANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 331 ~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~~~dg~i~vw~~ 409 (497)
++++|+++++. ++.|.+||.. ++.+..+..+.. + .+++| +|+++.|++++.+ .+.-++.
T Consensus 225 ~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~~L~v~t~~-~l~~~~~ 284 (296)
T 3e5z_A 225 VDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGRTLYMTVST-EFWSIET 284 (296)
T ss_dssp EBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSCEEEEEETT-EEEEEEC
T ss_pred ECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCCEEEEEcCC-eEEEEEc
Confidence 99999977777 8899999985 677777776654 2 57899 5899999988876 3444555
Q ss_pred CCC
Q 010933 410 GVG 412 (497)
Q Consensus 410 ~~~ 412 (497)
++.
T Consensus 285 ~~~ 287 (296)
T 3e5z_A 285 NVR 287 (296)
T ss_dssp SCC
T ss_pred ccc
Confidence 544
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=3.6e-14 Score=145.96 Aligned_cols=250 Identities=10% Similarity=0.078 Sum_probs=159.0
Q ss_pred CCcceEEEEEcCCCCEEEEeecCC-----eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
|...+..++|||||++||.+..++ .|++||+.+++. ..... ..
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~-----------------------~~~~~-~~-------- 170 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE-----------------------LPDVL-ER-------- 170 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE-----------------------EEEEE-EE--------
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC-----------------------Ccccc-cC--------
Confidence 444688999999999999876543 899999988753 11111 11
Q ss_pred cccccceeEEEEEecCCCCEEEEEeCCcc----------------EEEeecCchheeccccCCCCCccccccccccccCc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTNDKT----------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 169 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (497)
..+..++| +||++.|+.++.++. |++|++.+++...
T Consensus 171 ----~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~---------------------- 222 (710)
T 2xdw_A 171 ----VKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED---------------------- 222 (710)
T ss_dssp ----ECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC----------------------
T ss_pred ----cccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc----------------------
Confidence 22677999 789999999987765 5666654433110
Q ss_pred cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-----CCeEEEEeCc
Q 010933 170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINLWNLE 243 (497)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-----d~~i~iwd~~ 243 (497)
..+... ..|...+..+.|+|+|+.|+.+ . +..|++||+.
T Consensus 223 ----------------------------------~~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 223 ----------------------------------ILCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp ----------------------------------EEEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred ----------------------------------eEEecc-CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence 011110 2345567899999999999875 4 5789999998
Q ss_pred c------CceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC----CeEEEEEccCCcccccccceeccccccc
Q 010933 244 I------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESH 313 (497)
Q Consensus 244 ~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~~~~~~ 313 (497)
. ....... +..+...+.. .|+|+| ..|+..+.. +.|.+||+.++... ........ ..
T Consensus 268 ~~~~~~~~~~~~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~-~~-- 334 (710)
T 2xdw_A 268 QESNGITGILKWVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPE-HE-- 334 (710)
T ss_dssp GSSSSSCSSCCCEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECC-CS--
T ss_pred ccccccCCccceEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCC-CC--
Confidence 4 2212222 3344445544 488888 666665543 36999999876320 00011111 00
Q ss_pred CCccccccccccccEEEEeeCCCEEEEEe-cC--eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933 314 GSKSFFTEIIASISDIKFANDGQHLLSRD-YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 390 (497)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 390 (497)
...+..++|++++.++++.. ++ .|++|++.+ ++.+..+..+...+ ..++++|
T Consensus 335 ---------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v---------------~~~~~s~ 389 (710)
T 2xdw_A 335 ---------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV---------------VGYSGQK 389 (710)
T ss_dssp ---------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE---------------EEEECCT
T ss_pred ---------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE---------------EEEecCC
Confidence 12577888987777777764 45 566777754 66666676654322 5788999
Q ss_pred CCCEEEEE-e---CCCcEEEEEcCCCC
Q 010933 391 DGLHFATG-S---YSNLLRIFSHGVGS 413 (497)
Q Consensus 391 ~~~~l~s~-~---~dg~i~vw~~~~~~ 413 (497)
+++.|+.. + ..+.|++||+.+++
T Consensus 390 d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 390 KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 98766633 2 35789999998875
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=3.1e-15 Score=142.61 Aligned_cols=219 Identities=13% Similarity=0.021 Sum_probs=129.9
Q ss_pred EEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE-------------------EEEeCCCCcE
Q 010933 219 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-------------------AEFHPIYCNL 278 (497)
Q Consensus 219 ~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~ 278 (497)
.+.|+|+|+.|+.+ .++.|++||+. +++...+.. .+...... +.|+|++ +.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~-~~~~~~~~~-------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~ 155 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLE-TLEEQVIYT-------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SW 155 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEE-------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECC-CCCcEEEEe-------cccccCCCCCEEEeccCCccccccccccccCCCC-cc
Confidence 36799999999887 88899999998 444443321 11121111 3456776 55
Q ss_pred EEEE-----eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEec-------Ce
Q 010933 279 LAYS-----SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-------MN 345 (497)
Q Consensus 279 l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-------~~ 345 (497)
++.. ..+..|.+||+.+++.. ..... ...+..+.|+| +++.|+...+ ..
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~~--------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIETGELE----VIHQD--------------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDAR 217 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETTTCCEE----EEEEE--------------SSCEEEEEEETTEEEEEEEEECSCSSSCSCC
T ss_pred eeeeeeccCCCcceEEEEECCCCcEE----eeccC--------------CcccccceECCCCCCEEEEEecCCCCCCCce
Confidence 5443 35678999999876532 22211 24678899999 7887766532 36
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCCcceEEEe
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~ 420 (497)
|.+||+.. ++ ...+..+... ..+..++|+|||++|+.++.+ +.|++||+.+++.. .+.
T Consensus 218 l~~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~ 280 (396)
T 3c5m_A 218 MWLVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE--EVM 280 (396)
T ss_dssp CEEEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE--EEE
T ss_pred EEEEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE--Eee
Confidence 88888763 33 2222222111 012578999999988877654 45999999887543 222
Q ss_pred ccCcceeeeEeecCCCcccccccceeEeec----------------cCc-eecCC-CCCcccccccCC-----------C
Q 010933 421 AGKNENRKPILQAAPRARRSSLSNLTRGLY----------------RQA-HENSS-SGHHELSYNLSS-----------K 471 (497)
Q Consensus 421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----------------d~~-~iw~~-~~~~~~~~~~~~-----------~ 471 (497)
.... .. +.+++. +++. ++.++. +.. .+|.. .+....+..+.. .
T Consensus 281 ~~~~-~~-~~~s~~-dg~~-----l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 352 (396)
T 3c5m_A 281 VMPP-CS-HLMSNF-DGSL-----MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQIT 352 (396)
T ss_dssp ECCS-EE-EEEECS-SSSE-----EEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTT
T ss_pred eCCC-CC-CCccCC-CCce-----EEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCC
Confidence 1111 22 677762 4444 554431 122 55532 222233333333 2
Q ss_pred eEEEEEecCCCEEEEEeC
Q 010933 472 LLHLAWHPTTNLIACANG 489 (497)
Q Consensus 472 i~~l~~~p~~~~la~~~~ 489 (497)
+.+++|+|||+.|+.++.
T Consensus 353 ~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 353 HPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp CCCCEECTTSSEEEEEEC
T ss_pred CCCceEccCCCeEEEEec
Confidence 567899999999988773
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=1.6e-14 Score=148.05 Aligned_cols=248 Identities=10% Similarity=-0.019 Sum_probs=154.1
Q ss_pred CCcceEEEEEcCCCCEEE-----EeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLA-----VGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~la-----sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
|...+..++|||||++|| .|+.+..|++||+.+++. +. ..+...
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~-----------------------~~--~~~~~~------ 167 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW-----------------------SK--VDVIEG------ 167 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB-----------------------CS--SCCBSC------
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC-----------------------cC--CcccCc------
Confidence 455799999999999999 445557899999998753 10 111100
Q ss_pred cccccceeEEEEEecCCCCEEEEEeCCcc-------------EEEeecCchheeccccCCCCCccccccccccccCcccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 172 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (497)
.....++| +|||+.|+.++.|.. |++|++.++....
T Consensus 168 ----~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------- 216 (695)
T 2bkl_A 168 ----GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------------------- 216 (695)
T ss_dssp ----CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-------------------------
T ss_pred ----ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc-------------------------
Confidence 11267899 789999999988765 6666665544110
Q ss_pred CCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCC----eEEEEeCccCce
Q 010933 173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLEISDQ 247 (497)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~----~i~iwd~~~~~~ 247 (497)
..+... ..|...+..+.|+|+|+.|+.+ .++ .|++|+.. .+.
T Consensus 217 -------------------------------~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~-~~~ 263 (695)
T 2bkl_A 217 -------------------------------TVVHER-TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG-EKD 263 (695)
T ss_dssp -------------------------------EEEECC-CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT-CSS
T ss_pred -------------------------------eEEEec-CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC-CCc
Confidence 111111 3455678899999999999876 544 66677654 233
Q ss_pred eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC----CCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
... +..+...+....+ ++| . |+..+. ++.|.+||+.++... .....+..+ ..
T Consensus 264 ~~~--------l~~~~~~~~~~~~-~~g-~-l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~------------~~ 319 (695)
T 2bkl_A 264 FRL--------LVKGVGAKYEVHA-WKD-R-FYVLTDEGAPRQRVFEVDPAKPARA-SWKEIVPED------------SS 319 (695)
T ss_dssp CEE--------EEECSSCCEEEEE-ETT-E-EEEEECTTCTTCEEEEEBTTBCSGG-GCEEEECCC------------SS
T ss_pred eEE--------eecCCCceEEEEe-cCC-c-EEEEECCCCCCCEEEEEeCCCCCcc-CCeEEecCC------------CC
Confidence 332 2234445566666 677 5 444443 588999999776421 000222210 02
Q ss_pred ccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeec-ccccccccccCCCCCccceeEEEEcCCCCEEEEE---
Q 010933 324 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--- 398 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--- 398 (497)
..+..++++ ++.++++.. ++..+||.+...++....+..+ ...+ ..++++|+++.|+..
T Consensus 320 ~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~l~~~~ss 383 (695)
T 2bkl_A 320 ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA---------------SNLMGLEDLDDAYYVFTS 383 (695)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE---------------CCCBSCTTCSEEEEEEEE
T ss_pred CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE---------------EEeecCCCCCEEEEEEcC
Confidence 356778887 666666664 5777777665335555555544 2211 467888998877632
Q ss_pred -eCCCcEEEEEcCCCC
Q 010933 399 -SYSNLLRIFSHGVGS 413 (497)
Q Consensus 399 -~~dg~i~vw~~~~~~ 413 (497)
...+.|++||+.+++
T Consensus 384 ~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 384 FTTPRQIYKTSVSTGK 399 (695)
T ss_dssp TTEEEEEEEEETTTCC
T ss_pred CCCCCEEEEEECCCCc
Confidence 235789999998875
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=1.8e-13 Score=127.89 Aligned_cols=256 Identities=12% Similarity=0.070 Sum_probs=161.7
Q ss_pred ccCCcceEEEEEcCCCCEEEEee---------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 99 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 99 (497)
+.....+..+++ ||+++|... .++.|.+||+.+++. ..+
T Consensus 11 l~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~------------------------~~l------ 58 (347)
T 2gop_A 11 FAKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR------------------------RFI------ 58 (347)
T ss_dssp CCCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE------------------------EEE------
T ss_pred ceeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce------------------------EEc------
Confidence 334567888888 999988753 256899999887642 111
Q ss_pred cccccccccccceeEEEEEecCCCCEEEEEeCC---c--cEEEeecCchheeccccCCCCCccccccccccccCccccCC
Q 010933 100 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 174 (497)
Q Consensus 100 ~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (497)
..+..++| +|||++|+.++.+ + .|.+|++.+++...+
T Consensus 59 ----------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l-------------------------- 100 (347)
T 2gop_A 59 ----------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI-------------------------- 100 (347)
T ss_dssp ----------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE--------------------------
T ss_pred ----------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEE--------------------------
Confidence 22678899 7899999987643 3 366667766553221
Q ss_pred CCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC-------------------
Q 010933 175 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------------------- 234 (497)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------------------- 234 (497)
..+.. +..++|+|+|+.|+.+ .+
T Consensus 101 ------------------------------------~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g 143 (347)
T 2gop_A 101 ------------------------------------LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD 143 (347)
T ss_dssp ------------------------------------EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred ------------------------------------EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence 11122 8899999999988876 43
Q ss_pred --------CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC-------eEEEEEccCCccc
Q 010933 235 --------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALC 299 (497)
Q Consensus 235 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-------~i~v~d~~~~~~~ 299 (497)
..|++||+. +++.... +.. . .+..++|+|+| +++++..++ ...+|.+.+++.
T Consensus 144 ~~~~~~~~~~l~~~d~~-~~~~~~~-------l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~- 210 (347)
T 2gop_A 144 LGFFDGEKTTFWIFDTE-SEEVIEE-------FEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE- 210 (347)
T ss_dssp ------CEEEEEEEETT-TTEEEEE-------EEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-
T ss_pred cccccCccceEEEEECC-CCeEEee-------ecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-
Confidence 578899988 4544222 122 2 67889999997 566665442 344554443321
Q ss_pred ccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c--------CeEEEEecCCCCceeeeeeeccccccc
Q 010933 300 DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--------MNLKLWDIRMDSTPVATFKIHEHLRPK 370 (497)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~--------~~i~lwd~~~~~~~~~~~~~~~~~~~~ 370 (497)
+.+.. + ..+.. ++|+|++|+.++ + ..|.+|| . ++.......+...+
T Consensus 211 ----~~l~~-------------~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~-- 265 (347)
T 2gop_A 211 ----EKMFE-------------K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGV-- 265 (347)
T ss_dssp ----EEEEE-------------E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEE--
T ss_pred ----EEecc-------------C-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCccc--
Confidence 22221 1 22333 399999887754 2 3677777 3 55444333333322
Q ss_pred ccccCCCCCccceeE-EEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEee
Q 010933 371 LCDLYNNDSIFDKFE-CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL 449 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~-~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 449 (497)
.. +.|+ |+ ++++++.++.++|| +.++ .. ..+..+...+..+.+++ .+ +++++
T Consensus 266 -------------~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~----~~-----~~~~~ 318 (347)
T 2gop_A 266 -------------GQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE----IV-----VYLKE 318 (347)
T ss_dssp -------------EEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS----SE-----EEEEE
T ss_pred -------------CCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC----cE-----EEEEc
Confidence 44 8899 88 89999999999999 8854 33 44445577888888876 23 45555
Q ss_pred ccCc--eec
Q 010933 450 YRQA--HEN 456 (497)
Q Consensus 450 ~d~~--~iw 456 (497)
.++. .+|
T Consensus 319 ~~~~~~~l~ 327 (347)
T 2gop_A 319 TATRLRELF 327 (347)
T ss_dssp CSSSCCEEE
T ss_pred CCCChHHhe
Confidence 5554 677
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.63 E-value=1.9e-13 Score=126.74 Aligned_cols=244 Identities=9% Similarity=0.038 Sum_probs=147.2
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.+.+|++ +++|+++++...++.+.++............. ....+
T Consensus 24 ~~v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~ 68 (329)
T 3fvz_A 24 GQVSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGL---------------------------------GPIEE 68 (329)
T ss_dssp SCEEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGG---------------------------------CSCCS
T ss_pred CCceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeeccccc---------------------------------ccccC
Confidence 67999999 78898888888887655544332211100000 00124
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecC--CCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~i 266 (497)
+.+.+||.... +.+..+..++......++++++|+++++. .++.|++||.......+..+... +..-..+....
T Consensus 69 ~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P 145 (329)
T 3fvz_A 69 DTILVIDPNNA---EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQP 145 (329)
T ss_dssp CCEEEECTTTC---CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSE
T ss_pred CcEEEEECCCC---eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCC
Confidence 56777776532 23333323555678899999999988888 89999999987221133322100 00013445578
Q ss_pred EEEEEeC-CCCcEEEEEe-CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEec
Q 010933 267 TSAEFHP-IYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY 343 (497)
Q Consensus 267 ~~~~~~~-~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~ 343 (497)
..++++| ++ .++++.+ .++.|++||. +++.. ..+....... ....++......++++|+ +.++++...
T Consensus 146 ~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~~~----~~~~~~g~~~---~~~~~~~~~p~gia~d~~~g~l~v~d~~ 216 (329)
T 3fvz_A 146 TDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGKFV----TQWGEESSGS---SPRPGQFSVPHSLALVPHLDQLCVADRE 216 (329)
T ss_dssp EEEEECTTTC-CEEEEECSSCCEEEEECT-TSCEE----EEECEECCSS---SCCTTEESCEEEEEEETTTTEEEEEETT
T ss_pred cEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCCEE----EEeccCCCCC---CCCCcccCCCcEEEEECCCCEEEEEECC
Confidence 9999999 67 7777776 6999999994 45433 3332211000 000112234789999998 555555543
Q ss_pred -CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC------CCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 344 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 344 -~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
+.|++||..+ ++.+..+....... . ...++|+| +++..++...+..|++|+..+++.
T Consensus 217 ~~~I~~~~~~~-G~~~~~~~~~~~~~----------~---~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~ 280 (329)
T 3fvz_A 217 NGRIQCFKTDT-KEFVREIKHASFGR----------N---VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI 280 (329)
T ss_dssp TTEEEEEETTT-CCEEEEECCTTTTT----------C---EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE
T ss_pred CCEEEEEECCC-CcEEEEEeccccCC----------C---cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE
Confidence 8999999975 78777775432211 1 15788888 333333334456899999888743
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=2.7e-12 Score=126.61 Aligned_cols=318 Identities=9% Similarity=0.001 Sum_probs=196.6
Q ss_pred cCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEec
Q 010933 41 DKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA 120 (497)
Q Consensus 41 sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s 120 (497)
+|.+.++++...++.|.++|..+++. +.++... ..+..+.| +
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v-----------------------~~~i~~g-------------~~p~~v~~--S 205 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEI-----------------------KTVLDTG-------------YAVHISRL--S 205 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECS-------------SCEEEEEE--C
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeE-----------------------EEEEeCC-------------CCccceEE--C
Confidence 34555667777889999999988753 3344322 33668888 7
Q ss_pred CCCCEEEEEeCCccEEEeecC--chheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeec
Q 010933 121 PNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 198 (497)
Q Consensus 121 ~~~~~l~s~s~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (497)
||++++++++.|+.|.+||+. +++...
T Consensus 206 pDGr~lyv~~~dg~V~viD~~~~t~~~v~--------------------------------------------------- 234 (567)
T 1qks_A 206 ASGRYLFVIGRDGKVNMIDLWMKEPTTVA--------------------------------------------------- 234 (567)
T ss_dssp TTSCEEEEEETTSEEEEEETTSSSCCEEE---------------------------------------------------
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCCcEeE---------------------------------------------------
Confidence 899999999999999999985 433221
Q ss_pred CCccceeeeeeccCCCCCeeEEEeC----CCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCC---C-CCCeEE
Q 010933 199 NSVHARCQKVYPHAHDFNINSISNN----SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDD---L-TEVITS 268 (497)
Q Consensus 199 ~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~-~~~i~~ 268 (497)
.+ .. ......++|+ |+|++++++ .++.|.++|.. ..+.++.+........+ | ...+..
T Consensus 235 ---------~i-~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 235 ---------EI-KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp ---------EE-EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred ---------EE-ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCceEE
Confidence 11 11 1235688999 699998876 78999999988 55666665433211111 2 236788
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNL 346 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i 346 (497)
+..+++++.+++....+|.|.++|....+... ...+.. ......+.|+|+|++++++. .+.|
T Consensus 303 i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~sn~V 366 (567)
T 1qks_A 303 ILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA--------------ERFLHDGGLDGSHRYFITAANARNKL 366 (567)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC--------------CSSEEEEEECTTSCEEEEEEGGGTEE
T ss_pred EEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec--------------cccccCceECCCCCEEEEEeCCCCeE
Confidence 88999875666667778999999987643210 011111 12356789999999988764 3999
Q ss_pred EEEecCCCCceeeeeee-cccccccccccCCCCCccceeEEE-EcCCCCEE-EEEe-CCCcEEEEEcCCCC------cce
Q 010933 347 KLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECS-VSGDGLHF-ATGS-YSNLLRIFSHGVGS------AGG 416 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~l-~s~~-~dg~i~vw~~~~~~------~~~ 416 (497)
.++|+.+ ++.+..+.. ...+-+ . .... ++|++..+ +++. .++.|.++|..+.+ .+.
T Consensus 367 ~ViD~~t-~kl~~~i~vgg~~Php----------g---~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 367 VVIDTKE-GKLVAIEDTGGQTPHP----------G---RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEEETTT-TEEEEEEECSSSSBCC----------T---TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EEEECCC-CcEEEEEeccCcCCCC----------c---cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence 9999987 777766654 221100 0 1233 57875544 4543 46899999998732 223
Q ss_pred EEEeccCcceeeeEeecCCCcccccccceeEeec-------cCc-eecCCCCC-----cc--ccc---------ccCCCe
Q 010933 417 ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY-------RQA-HENSSSGH-----HE--LSY---------NLSSKL 472 (497)
Q Consensus 417 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-------d~~-~iw~~~~~-----~~--~~~---------~~~~~i 472 (497)
..+........-+..+| +++. +..... .+. .++..... .. ... ...+.+
T Consensus 433 ~~i~~~g~g~~~i~~~p--~~~~-----l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHP--NSQY-----LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRV 505 (567)
T ss_dssp EEEECSCSCCCCEECCT--TCSE-----EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEE
T ss_pred EEEecCCCCCEEEEeCC--CCCe-----EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcce
Confidence 45544332222344455 4433 333221 112 44511111 10 111 124578
Q ss_pred EEEEEecCCCEEEEEe------CCceEEEe
Q 010933 473 LHLAWHPTTNLIACAN------GNSLFFHY 496 (497)
Q Consensus 473 ~~l~~~p~~~~la~~~------~~~~~i~~ 496 (497)
.++.|+|+|+.+.++. ++.+.|+.
T Consensus 506 ~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 506 VQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 8999999999876652 46677764
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=1.9e-13 Score=122.85 Aligned_cols=239 Identities=8% Similarity=-0.019 Sum_probs=157.4
Q ss_pred ceEEEEEcCCCCEEE-EeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 34 ~I~~i~~sp~g~~la-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
...+++++|+|++++ +...++.|.+|+..+... ... ...+. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~---------------------~~~--~~~~~------------~~p 69 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT---------------------TVL--PFNGL------------YQP 69 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------------------------EEC--CCCSC------------CSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc---------------------ceE--eeCCc------------CCc
Confidence 778999999999777 546788999998765421 000 01122 447
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
.++++ ++++..+++.. ++.|.+|+..+.......
T Consensus 70 ~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~------------------------------------------- 103 (270)
T 1rwi_B 70 QGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVLP------------------------------------------- 103 (270)
T ss_dssp CCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEECC-------------------------------------------
T ss_pred ceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeeee-------------------------------------------
Confidence 78999 67777655555 889999997654422110
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 271 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (497)
......+..+++.++|+++++. .++.|.+|+... ...... .......+..+++
T Consensus 104 ------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~-------~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 104 ------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVL-------PFTGLNDPDGVAV 157 (270)
T ss_dssp ------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEEC-------CCCSCCSCCCEEE
T ss_pred ------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEee-------ccccCCCceeEEE
Confidence 1222457889999999988887 789999997652 221111 1122345788999
Q ss_pred eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEe
Q 010933 272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWD 350 (497)
Q Consensus 272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd 350 (497)
+++| +++++...++.|.+||....... ..... +...+..++++++|.++++.. ++.|.+|+
T Consensus 158 ~~~g-~l~v~~~~~~~i~~~~~~~~~~~----~~~~~-------------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 158 DNSG-NVYVTDTDNNRVVKLEAESNNQV----VLPFT-------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp CTTC-CEEEEEGGGTEEEEECTTTCCEE----ECCCS-------------SCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred eCCC-CEEEEECCCCEEEEEecCCCceE----eeccc-------------CCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 9999 77777777889999998765422 11000 113578899999997666664 48999999
Q ss_pred cCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933 351 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
... .........+... ..+++++++|+++++...+++|+++++...+
T Consensus 220 ~~~-~~~~~~~~~~~~~---------------p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 220 AGS-TTSTVLPFTGLNT---------------PLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp TTC-SCCEECCCCSCSC---------------EEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCC-CcceeeccCCCCC---------------ceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 864 3222111111111 2589999999988888999999999988653
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=8.6e-12 Score=113.67 Aligned_cols=239 Identities=9% Similarity=0.017 Sum_probs=161.1
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
+...+.+++++++|++.++...++.|.+||.. ++. ... .+..+. .
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~---------------------~~~-~~~~~~------------~ 57 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI---------------------TEY-PLPTPD------------A 57 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE---------------------EEE-ECSSTT------------C
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe---------------------EEe-cCCccc------------C
Confidence 34688999999999988776667899999977 432 100 111222 5
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.+.++++ ++++..+++...++.|..|+.. ++....
T Consensus 58 ~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~------------------------------------------ 92 (299)
T 2z2n_A 58 KVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY------------------------------------------ 92 (299)
T ss_dssp CEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE------------------------------------------
T ss_pred ceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE------------------------------------------
Confidence 5888998 6788877777778889999875 321110
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
. .......+..+++.++|+++++. .++.|..||.. .. ..... .......+..+
T Consensus 93 -----~-------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~------~~~~~~~~~~i 146 (299)
T 2z2n_A 93 -----T-------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GK-IREYE------LPNKGSYPSFI 146 (299)
T ss_dssp -----E-------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEE------CSSTTCCEEEE
T ss_pred -----e-------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CC-EEEec------CCCCCCCCceE
Confidence 0 01234467889999999888888 78999999984 33 22221 22344578999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 348 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~l 348 (497)
++++++ .++++...++.|..||. +++.. .+.. ......+..++++++|+++++.. .+.|.+
T Consensus 147 ~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 147 TLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKI-----------PTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp EECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeC-----------CCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 999998 87777777889999998 55432 1111 00123577899999998776664 489999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
||. + ++.. .+...... ..+.+++++++|+++++...++.|..||.
T Consensus 209 ~~~-~-g~~~-~~~~~~~~-------------~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 209 ITT-S-GEIT-EFKIPTPN-------------ARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp ECT-T-CCEE-EEECSSTT-------------CCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred ECC-C-CcEE-EEECCCCC-------------CCceeEEECCCCCEEEeccCCceEEEECC
Confidence 998 4 4432 23211110 01258999999997777767899999997
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=1.1e-12 Score=121.80 Aligned_cols=245 Identities=11% Similarity=0.100 Sum_probs=155.7
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
+...+.+++|+|+|++++++..++.|.+||.++++. ......+. .
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-----------------------~~~~~~~~------------~ 87 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-----------------------KRPFVSHK------------A 87 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----------------------EEEEECSS------------S
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-----------------------EEEeeCCC------------C
Confidence 445678999999999888888899999999877642 11111333 6
Q ss_pred ceeEEEEEecCCCCEEEEEeCC----ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 111 KINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
.+.+++| ++++.++++...+ +.|.+||..++.......
T Consensus 88 ~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~------------------------------------ 129 (333)
T 2dg1_A 88 NPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE------------------------------------ 129 (333)
T ss_dssp SEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC------------------------------------
T ss_pred CcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc------------------------------------
Confidence 6999999 6888877777666 689999887665321100
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c------CCeEEEEeCccCceeeEEeecCCCcc
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~ 259 (497)
...+...+.+++++|+|+++++. . .+.|..+|.. +++....
T Consensus 130 -----------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~~~~~~-------- 177 (333)
T 2dg1_A 130 -----------------------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPI-------- 177 (333)
T ss_dssp -----------------------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEE--------
T ss_pred -----------------------cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CCEEEEe--------
Confidence 01234568899999999888876 3 3566666655 3333222
Q ss_pred CCCCCCeEEEEEeCCCCcEEE-EEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933 260 DDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 337 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 337 (497)
......+..++|+|++ +.|+ +.+.++.|.+||+.+ +... ..+..... ..+.++ ..+..++++++|++
T Consensus 178 ~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~~-----~~~~~~-~~~~~i~~d~~G~l 246 (333)
T 2dg1_A 178 IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGATIP-----YYFTGH-EGPDSCCIDSDDNL 246 (333)
T ss_dssp EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEEE-----EECCSS-SEEEEEEEBTTCCE
T ss_pred ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccceEE-----EecCCC-CCCCceEECCCCCE
Confidence 1123457889999998 7554 445688999999964 3221 11100000 000111 35678999999998
Q ss_pred EEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 338 LLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 338 l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
+++.. ++.|.+||.. ++.+..+..+.... .....+.+++|+||++.|+.++.++
T Consensus 247 ~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~---------g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 247 YVAMYGQGRVLVFNKR--GYPIGQILIPGRDE---------GHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEETTTEEEEECTT--SCEEEEEECTTGGG---------TCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEcCCCEEEEECCC--CCEEEEEEcCCCcc---------ccccCcceEEECCCCCEEEEEeCcc
Confidence 77764 4899999984 66666665443200 0000015899999987777666553
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2.4e-13 Score=139.74 Aligned_cols=239 Identities=8% Similarity=-0.061 Sum_probs=158.0
Q ss_pred CCCCCeeEEEeCCCCCEEEEE-c-CC----eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC
Q 010933 212 AHDFNINSISNNSDCETFVSA-D-DL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 285 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 285 (497)
+|...+..++|||||+.|+.+ . +| .|++||+. +++..... .. ...+..++|+||| +.|+.++.+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~-tg~~~~~~------~~--~~~~~~~~wspDg-~~l~~~~~~ 191 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-GAKELPDV------LE--RVKFSCMAWTHDG-KGMFYNAYP 191 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-TTEEEEEE------EE--EECSCCEEECTTS-SEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC-CCCCCccc------cc--CcccceEEEEeCC-CEEEEEEEC
Confidence 444567889999999999876 3 33 89999998 55544421 11 1235679999999 888888877
Q ss_pred Ce----------------EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe------c
Q 010933 286 GF----------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------Y 343 (497)
Q Consensus 286 g~----------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~ 343 (497)
+. |++|++.+++.... .++.. ..|...+..+.|+|||++|+.+. +
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~-----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEF-----------PDEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECC-----------TTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred CccccccccccccCCCCEEEEEECCCCcccce--EEecc-----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence 65 99999987652211 12222 11224467899999999988753 3
Q ss_pred CeEEEEecCC------CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CcEEEEEcCCCC
Q 010933 344 MNLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS 413 (497)
Q Consensus 344 ~~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~vw~~~~~~ 413 (497)
..|++||+.. +......+..+.... ...|+|+|+.|+..+.+ +.|.+|++.++.
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 6899999874 222455555554432 24588999888766653 369999998764
Q ss_pred c-ceEEEeccCc--ceeeeEeecCCCcccccccceeEeeccCc-eec--C--CCCCcccccccCCCeEEEEEecCCCEEE
Q 010933 414 A-GGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S--SSGHHELSYNLSSKLLHLAWHPTTNLIA 485 (497)
Q Consensus 414 ~-~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~--~~~~~~~~~~~~~~i~~l~~~p~~~~la 485 (497)
. ....+..|.. .+..+.+++ ++.+ +++...++. ++| . .++....+..+...|..++++|+++.|+
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~--~~~l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLEWVACVR--SNFL-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp GGGCEEEECCCSSCEEEEEEEET--TTEE-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred cccceeccCCCCCCeEEEEEEEc--CCEE-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 2 2245555544 677788874 4444 777888877 666 3 3333344444567788999999998776
Q ss_pred EEeC-----CceEEEe
Q 010933 486 CANG-----NSLFFHY 496 (497)
Q Consensus 486 ~~~~-----~~~~i~~ 496 (497)
.... ..+|.|.
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 5432 3577765
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=2.5e-13 Score=126.92 Aligned_cols=248 Identities=8% Similarity=0.038 Sum_probs=140.2
Q ss_pred cceEEEEEcCCCCEEEEeecC---C--eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 33 DIVSAIEFDKTGDYLAVGDRG---G--RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
..+..++|||||++||..+.+ + .|.+|++.+++. ..+..+.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~------------------------~~l~~~~---------- 104 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS------------------------KKILEAK---------- 104 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE------------------------EEEEEES----------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce------------------------EEEEcCC----------
Confidence 567889999999999988754 3 377778776532 1122233
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
. +..++| +||++.|+.++.+.. ............. ..+..-.. ..
T Consensus 105 --~-~~~~~w--spdg~~l~~~~~~~~------~~~~~~~~~~~~~---------------------~~~g~~~~---~~ 149 (347)
T 2gop_A 105 --N-IRSLEW--NEDSRKLLIVGFKRR------EDEDFIFEDDVPA---------------------WFDDLGFF---DG 149 (347)
T ss_dssp --E-EEEEEE--CTTSSEEEEEEECCC------C---------CCC---------------------C------------
T ss_pred --C-ccceeE--CCCCCEEEEEEccCC------CcCCcEEEcccce---------------------eecCcccc---cC
Confidence 5 888999 789999998875420 0000000000000 00000000 00
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC------C-eEEEEeCccCceeeEEeecCCCcc
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------L-RINLWNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------~-~i~iwd~~~~~~~~~~~~~~~~~~ 259 (497)
....+.+|++... +.++.+ .. . .+..++|+|+| +++++ .+ . ...+|.++ .++...+
T Consensus 150 ~~~~l~~~d~~~~---~~~~~l-~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l-------- 213 (347)
T 2gop_A 150 EKTTFWIFDTESE---EVIEEF-EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM-------- 213 (347)
T ss_dssp CEEEEEEEETTTT---EEEEEE-EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE--------
T ss_pred ccceEEEEECCCC---eEEeee-cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEe--------
Confidence 0234556665432 221222 22 3 77889999999 77766 43 2 44555555 4544333
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeCC--------CeEEEEEccCCcccccccceecccccccCCccccccccccccE-EE
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSSR--------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD-IK 330 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~ 330 (497)
..+ ..+..+ +|+| +.|+.++.+ ..|.+|| +++.. ..... +...+.. +.
T Consensus 214 ~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~----~l~~~-------------~~~~~~~~~~ 270 (347)
T 2gop_A 214 FEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKEVM----GILDE-------------VDRGVGQAKI 270 (347)
T ss_dssp EEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSCEE----ESSTT-------------CCSEEEEEEE
T ss_pred ccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCceE----ecccc-------------CCcccCCccE
Confidence 223 444444 9999 777777644 3688888 43321 12111 2345665 88
Q ss_pred EeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE-EEEE
Q 010933 331 FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL-RIFS 408 (497)
Q Consensus 331 ~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i-~vw~ 408 (497)
|+ ++ +++++. ++.++|| +. .++..... .+...+ .+++|+| .++++++.++.. .||.
T Consensus 271 ~s-dg-~~~~~~~~~~~~l~-~~-~g~~~~~~-~~~~~v---------------~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 271 KD-GK-VYFTLFEEGSVNLY-IW-DGEIKPIA-KGRHWI---------------MGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp ET-TE-EEEEEEETTEEEEE-EE-SSSEEEEE-CSSSEE---------------EEEEESS--SEEEEEECSSSCCEEEE
T ss_pred Ec-Cc-EEEEEecCCcEEEE-Ec-CCceEEEe-cCCCeE---------------EeeeeeC--cEEEEEcCCCChHHheE
Confidence 99 88 777764 4899999 87 36543333 233322 5799999 677787777765 7777
Q ss_pred cC
Q 010933 409 HG 410 (497)
Q Consensus 409 ~~ 410 (497)
++
T Consensus 329 ~~ 330 (347)
T 2gop_A 329 WD 330 (347)
T ss_dssp ES
T ss_pred eC
Confidence 76
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=1.6e-12 Score=116.76 Aligned_cols=245 Identities=10% Similarity=0.053 Sum_probs=164.2
Q ss_pred CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCC
Q 010933 43 TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 122 (497)
Q Consensus 43 ~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~ 122 (497)
.+++|++++.|+.|.+||.++++. +.++..+.. ..+.++.+ .|+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-----------------------~w~~~~~~~-----------~~~~~~~~--~pd 47 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-----------------------VWEYPLEKG-----------WECNSVAA--TKA 47 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-----------------------EEEEECCTT-----------CCCCEEEE--CTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-----------------------EEEeCCCcc-----------CCCcCeEE--CCC
Confidence 468999999999999999988754 444444320 24778888 688
Q ss_pred CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCcc
Q 010933 123 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 202 (497)
Q Consensus 123 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (497)
|+.++ +.++.|..||. +++. +|...
T Consensus 48 G~ilv--s~~~~V~~~d~-~G~~------------------------------------------------~W~~~---- 72 (276)
T 3no2_A 48 GEILF--SYSKGAKMITR-DGRE------------------------------------------------LWNIA---- 72 (276)
T ss_dssp SCEEE--ECBSEEEEECT-TSCE------------------------------------------------EEEEE----
T ss_pred CCEEE--eCCCCEEEECC-CCCE------------------------------------------------EEEEc----
Confidence 88888 45778999998 5553 23322
Q ss_pred ceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933 203 ARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 280 (497)
Q Consensus 203 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 280 (497)
..+...+.++.+.++|+.+++. . ++.|..+|.+ ++.+..+.+.. ....+......+++.++| ++++
T Consensus 73 --------~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~-~~~~~~~~~~~v~~~~~G-~~lv 140 (276)
T 3no2_A 73 --------APAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFET-GIERPHAQFRQINKNKKG-NYLV 140 (276)
T ss_dssp --------CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECC-SCSSGGGSCSCCEECTTS-CEEE
T ss_pred --------CCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccC-CCCcccccccCceECCCC-CEEE
Confidence 1222357788999999999987 6 7888888764 44444333221 112233345567889999 9999
Q ss_pred EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceee
Q 010933 281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA 359 (497)
Q Consensus 281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~ 359 (497)
+...++.|..||.. |+.+ ..+.. .....++.+.++|++++++.+ +.|..+|..+ ++.+.
T Consensus 141 ~~~~~~~v~~~d~~-G~~~----w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t-G~~~w 200 (276)
T 3no2_A 141 PLFATSEVREIAPN-GQLL----NSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES-NRIVR 200 (276)
T ss_dssp EETTTTEEEEECTT-SCEE----EEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT-CCEEE
T ss_pred EecCCCEEEEECCC-CCEE----EEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC-CcEEE
Confidence 99999999999988 7654 33332 124566788899999988765 7899999986 89988
Q ss_pred eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCCcceEEE
Q 010933 360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSAGGITV 419 (497)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d--------g~i~vw~~~~~~~~~~~~ 419 (497)
++......- .....+..+...++|..+++.... +..+++++.....+.-.+
T Consensus 201 ~~~~~~~~~---------~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 201 RVNANDIEG---------VQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp EEEGGGSBS---------CCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred EecCCCCCC---------ccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 887543110 011223678889999988877421 244566664333433333
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=1.8e-12 Score=118.18 Aligned_cols=235 Identities=10% Similarity=0.014 Sum_probs=153.9
Q ss_pred CCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933 212 AHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 289 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 289 (497)
.+.....+++|+|+|+ +++++ .++.|+.|+.. ++ ... +..+...+.+++++|+| .++++...++.|.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~-~~--~~~-------~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD-GQ--LSP-------EMHPSHHQNGHCLNKQG-HLIACSHGLRRLE 93 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT-SC--EEE-------EESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC-CC--eEE-------EECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence 4455678999999998 67777 89999999998 44 333 33456778999999999 8777776778999
Q ss_pred EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE----e-----------c-CeEEEEecCC
Q 010933 290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR----D-----------Y-MNLKLWDIRM 353 (497)
Q Consensus 290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~----~-----------~-~~i~lwd~~~ 353 (497)
+||..+++.. ....... ......++.++++|+|+++++. + + +.-.||.+..
T Consensus 94 ~~d~~~g~~~----~~~~~~~---------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 94 RQREPGGEWE----SIADSFE---------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp EECSTTCCEE----EEECEET---------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred EEcCCCCcEE----EEeeccC---------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 9999777532 1111100 0011356789999999988873 2 0 1124444433
Q ss_pred CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC-CCCc-c-eEEEeccCcceeeeE
Q 010933 354 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG-VGSA-G-GITVEAGKNENRKPI 430 (497)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~-~~~~-~-~~~~~~~~~~v~~~~ 430 (497)
.++ +..+..+... ...++|+|+++.|++.+.++.|++|++. ++.. . ...+..+...+..++
T Consensus 161 ~g~-~~~~~~~~~~---------------~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~ 224 (296)
T 3e5z_A 161 DGT-LSAPIRDRVK---------------PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR 224 (296)
T ss_dssp TSC-EEEEECCCSS---------------EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred CCC-EEEeecCCCC---------------CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence 233 3333322221 1589999999999878888999999997 3432 1 123333455567788
Q ss_pred eecCCCcccccccceeEeeccCc-eecCCCCCc-ccccccCCCeEEEEE-ecCCCEEEEEeCCceEEEe
Q 010933 431 LQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH-ELSYNLSSKLLHLAW-HPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~-~~~~~~~~~i~~l~~-~p~~~~la~~~~~~~~i~~ 496 (497)
+.+ ++.+ .++. ++. .+|...... .....+.. +++++| .|+++.|.+++.++++-+.
T Consensus 225 ~d~--~G~l-----~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 225 VDA--GGLI-----WASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp EBT--TSCE-----EEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred ECC--CCCE-----EEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 877 4544 3443 444 788544333 33333444 889999 5899999999988887664
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=6.5e-13 Score=136.17 Aligned_cols=238 Identities=6% Similarity=-0.048 Sum_probs=148.8
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933 211 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 284 (497)
Q Consensus 211 ~~h~~~v~~~~~~~~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 284 (497)
.+|...+..++|||||+.|+.+ .+..|++||+. +++.... ..+... ....++|+|+| +.|+.++.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~-tg~~~~~-----~~~~~~--~~~~~~wspDg-~~l~~~~~ 187 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD-SGEWSKV-----DVIEGG--KYATPKWTPDS-KGFYYEWL 187 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT-TCCBCSS-----CCBSCC--TTCCCEECTTS-SEEEEEEC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC-CCCCcCC-----cccCcc--cccceEEecCC-CEEEEEEe
Confidence 3566678899999999999853 34689999999 4443200 011111 12678999999 88999888
Q ss_pred CCe-------------EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC----eE
Q 010933 285 RGF-------------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM----NL 346 (497)
Q Consensus 285 dg~-------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~----~i 346 (497)
|.. |++|++.++..... .++.. ..+...+..+.|+|||++|+.+. ++ .|
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l 254 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER-----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDV 254 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC-----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhce--EEEec-----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence 765 99999987753211 12222 11234678999999999988763 34 66
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe---CCCcEEEEEcCCCCcc-eEEEecc
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---YSNLLRIFSHGVGSAG-GITVEAG 422 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~---~dg~i~vw~~~~~~~~-~~~~~~~ 422 (497)
++|+... + ....+..+.... ....+ ++|++++... .++.|.+|++.+++.. ...+..+
T Consensus 255 ~~~~~~~-~-~~~~l~~~~~~~---------------~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 316 (695)
T 2bkl_A 255 YWKRPGE-K-DFRLLVKGVGAK---------------YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE 316 (695)
T ss_dssp EEECTTC-S-SCEEEEECSSCC---------------EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC
T ss_pred EEEcCCC-C-ceEEeecCCCce---------------EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC
Confidence 7776542 3 344454444322 34555 5666444444 2588999999876431 1333333
Q ss_pred --CcceeeeEeecCCCcccccccceeEeeccCc-eec--C-CCCCccccccc-CCCeEEEEEecCCCEEEEEeC-----C
Q 010933 423 --KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSYNL-SSKLLHLAWHPTTNLIACANG-----N 490 (497)
Q Consensus 423 --~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~-~~~~~~~~~~~-~~~i~~l~~~p~~~~la~~~~-----~ 490 (497)
...+..+.++ ++.+ +++...++. ++| . .++.......+ ...|..++++|+++.|+.... .
T Consensus 317 ~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 388 (695)
T 2bkl_A 317 DSSASLLSVSIV---GGHL-----SLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR 388 (695)
T ss_dssp CSSCEEEEEEEE---TTEE-----EEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred CCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 4456777776 3344 788888888 888 2 23322222222 556778899999987775442 3
Q ss_pred ceEEEe
Q 010933 491 SLFFHY 496 (497)
Q Consensus 491 ~~~i~~ 496 (497)
.+|+|+
T Consensus 389 ~v~~~d 394 (695)
T 2bkl_A 389 QIYKTS 394 (695)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 577775
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=8.4e-12 Score=115.42 Aligned_cols=160 Identities=13% Similarity=-0.035 Sum_probs=107.1
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CCCeEEEEE
Q 010933 215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVD 292 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d 292 (497)
.....++++++++.+++. .++.|.+||.. ..+....+.... ..+.......+++ .++ .++++.. .++.|.++|
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~--~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPK-TYEITGYIECPD--MDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKID 158 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETT-TTEEEEEEECTT--CCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEE
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECC-CCeEEEEEEcCC--ccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEE
Confidence 456788998888666666 79999999998 555554433221 0111124456667 343 4444443 489999999
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c----------CeEEEEecCCCCceeeee
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y----------MNLKLWDIRMDSTPVATF 361 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~----------~~i~lwd~~~~~~~~~~~ 361 (497)
+.+++.. ..+.. ......+.++|+|++++++. + +.|.++|..+ ++....+
T Consensus 159 ~~t~~~~----~~i~~--------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~ 219 (328)
T 3dsm_A 159 TETDKVV----DELTI--------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQF 219 (328)
T ss_dssp TTTTEEE----EEEEC--------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEE
T ss_pred CCCCeEE----EEEEc--------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC-CeEEEEE
Confidence 9987654 22222 12357789999998777753 2 6899999986 6766666
Q ss_pred eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
....... ...++|+|++++|+++.. .|.+||..+++.
T Consensus 220 ~~~~g~~--------------p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 220 KFKLGDW--------------PSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp ECCTTCC--------------CEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred ecCCCCC--------------ceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 5432110 158999999999988765 899999987743
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=2e-12 Score=133.55 Aligned_cols=245 Identities=11% Similarity=0.048 Sum_probs=147.6
Q ss_pred cceEEEEEcCCCCEEEEeecC-----CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 33 DIVSAIEFDKTGDYLAVGDRG-----GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
..+..++|||||++||.++.+ ..|++||+.+++. +. ...+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~-----------------------~~-~~~~~---------- 208 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP-----------------------LA-DELKW---------- 208 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE-----------------------EE-EEEEE----------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC-----------------------CC-ccCCC----------
Confidence 478899999999999987654 3699999998753 11 11111
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCcc--------------EEEeecCchheeccccCCCCCccccccccccccCccccC
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKT--------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 173 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~--------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (497)
..+..++| +|| +.|+.++.|+. |.+|++.++...
T Consensus 209 --~~~~~~~w--spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--------------------------- 256 (741)
T 1yr2_A 209 --VKFSGLAW--LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA--------------------------- 256 (741)
T ss_dssp --EESCCCEE--STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG---------------------------
T ss_pred --ceeccEEE--ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh---------------------------
Confidence 22357889 688 88888876654 444554332210
Q ss_pred CCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCC-----eEEEEeCccCc-
Q 010933 174 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-----RINLWNLEISD- 246 (497)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~-----~i~iwd~~~~~- 246 (497)
...+... ..+...+..+.|+|||+.|+.. .++ .|++||+....
T Consensus 257 -----------------------------~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~ 306 (741)
T 1yr2_A 257 -----------------------------DQPVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI 306 (741)
T ss_dssp -----------------------------CEEEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE
T ss_pred -----------------------------CEEEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC
Confidence 0111110 2334458899999999988876 443 89999988331
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC----CCeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 322 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (497)
..... +..+...+... ++|+| ..|+..+. ++.|.+||+.++. ......+.. +
T Consensus 307 ~~~~~-------l~~~~~~~~~~-~~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~-------------~ 362 (741)
T 1yr2_A 307 GPVTA-------LIPDLKAQWDF-VDGVG-DQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPE-------------S 362 (741)
T ss_dssp CCCEE-------EECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECC-------------C
T ss_pred cccEE-------ecCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecC-------------C
Confidence 20222 22333444444 34888 77777765 3569999987742 000122222 1
Q ss_pred cccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeec-ccccccccccCCCCCccceeEEEEcCCCCEEEEE--
Q 010933 323 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-- 398 (497)
Q Consensus 323 ~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-- 398 (497)
...+..++++ ++.++++. .++..+||.+...++....+..+ ... +..++++|+++.|+..
T Consensus 363 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~---------------v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 363 KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGS---------------ASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCE---------------EEEEECCBTCSCEEEEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeE---------------EEEeecCCCCCEEEEEEc
Confidence 2345667776 45566665 45776666554335555555432 221 1578899998866622
Q ss_pred --eCCCcEEEEEcCCCC
Q 010933 399 --SYSNLLRIFSHGVGS 413 (497)
Q Consensus 399 --~~dg~i~vw~~~~~~ 413 (497)
...+.|++||+.+++
T Consensus 427 s~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 427 SFTQPATVLALDPATAK 443 (741)
T ss_dssp ETTEEEEEEEEETTTTE
T ss_pred CCCCCCEEEEEECCCCc
Confidence 235789999998764
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=1.3e-11 Score=113.43 Aligned_cols=247 Identities=11% Similarity=0.125 Sum_probs=156.8
Q ss_pred cceEEEEEcCCCCEEEE-------eecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc--ccccCcccccc
Q 010933 33 DIVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYL 103 (497)
Q Consensus 33 ~~I~~i~~sp~g~~las-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~ 103 (497)
....+++|+++|+++++ +..++.|.+||..+++. ..+.. ..++.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------~~~~~~~~~~~~------ 70 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK---------------------TVICKPEVNGYG------ 70 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE---------------------EEEECCEETTEE------
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE---------------------EEEEecccCCCC------
Confidence 45679999999998888 67889999999876642 11100 01233
Q ss_pred cccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheecc-ccCCCCCccccccccccccCccccCCCCCcccc
Q 010933 104 KSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 181 (497)
Q Consensus 104 ~~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (497)
..+..+++ +++ +.+++ ++..+.|.+|+.. ++.... .....
T Consensus 71 ------~~~~~i~~--~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~---------------------------- 112 (314)
T 1pjx_A 71 ------GIPAGCQC--DRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSE---------------------------- 112 (314)
T ss_dssp ------CCEEEEEE--CSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTT----------------------------
T ss_pred ------CCCceEEE--ecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCC----------------------------
Confidence 56889999 677 55444 4444478889987 554322 10000
Q ss_pred cccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC---------------CeEEEEeCccC
Q 010933 182 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------------LRINLWNLEIS 245 (497)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------------~~i~iwd~~~~ 245 (497)
......+.++++.++|+++++. .+ +.|..|+..
T Consensus 113 -----------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 161 (314)
T 1pjx_A 113 -----------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-- 161 (314)
T ss_dssp -----------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--
T ss_pred -----------------------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--
Confidence 1112357789999999888877 54 567777765
Q ss_pred ceeeEEeecCCCccCCCCCCeEEEEEe----CCCCcEEEEE-eCCCeEEEEEcc-CCcccccccceecccccccCCcccc
Q 010933 246 DQCFNIVDMKPSNMDDLTEVITSAEFH----PIYCNLLAYS-SSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFF 319 (497)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~-~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (497)
++.... ..+......++++ |++ +.|+++ ..++.|.+||+. +++... ...+.. +
T Consensus 162 g~~~~~--------~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~----------~ 220 (314)
T 1pjx_A 162 GQMIQV--------DTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH----------I 220 (314)
T ss_dssp SCEEEE--------EEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE----------C
T ss_pred CCEEEe--------ccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE----------C
Confidence 332222 1223456889999 998 665555 567899999986 332110 011111 1
Q ss_pred cccc-ccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-
Q 010933 320 TEII-ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA- 396 (497)
Q Consensus 320 ~~~~-~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~- 396 (497)
..+. .....++++++|+++++.. ++.|.+||..+ ++.+..+..+... +.+++|+|+++.|+
T Consensus 221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~---------------~~~i~~~~dg~~l~v 284 (314)
T 1pjx_A 221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFV 284 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSC---------------EEEEEECTTSSEEEE
T ss_pred CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCC---------------ceeEEECCCCCEEEE
Confidence 1111 3467899999998887764 58999999874 5555555544322 16899999999554
Q ss_pred EEeCCCcEEEEEcCCC
Q 010933 397 TGSYSNLLRIFSHGVG 412 (497)
Q Consensus 397 s~~~dg~i~vw~~~~~ 412 (497)
+...++.|..|++...
T Consensus 285 ~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 285 TEHENNAVWKFEWQRN 300 (314)
T ss_dssp EETTTTEEEEEECSSC
T ss_pred EeCCCCeEEEEeCCCC
Confidence 5556789999998753
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.50 E-value=7.7e-11 Score=116.23 Aligned_cols=318 Identities=12% Similarity=0.048 Sum_probs=183.5
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEec--CCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
...+..++|||||+++++++.|+.|.+||+. +.+ .+.++...
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-----------------------~v~~i~~G------------- 239 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-----------------------TVAEIKIG------------- 239 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-----------------------EEEEEECC-------------
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-----------------------EeEEEecC-------------
Confidence 3466789999999999999999999999985 432 23333332
Q ss_pred cceeEEEEEec----CCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcc-cccc
Q 010933 110 EKINRVRWCAA----PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYH 183 (497)
Q Consensus 110 ~~i~~l~~~~s----~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 183 (497)
.....++| + |||+++++++ .+++|.++|..+.+........... +.. ..+.++.++.....++... +++.
T Consensus 240 ~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~-~~~-~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 240 SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-YDE-QEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-TTT-CCEESCCCEEEEEECSSSSEEEEE
T ss_pred CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc-ccc-ccccCCCceEEEEEcCCCCEEEEE
Confidence 23578899 6 5999988876 5699999998887655433221100 000 0000000111111111111 1111
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeec-CCCccC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDM-KPSNMD 260 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~-~~~~~~ 260 (497)
....+.+.+.|........ +..+ ........+.|+|+|++++++ .++.|.++|.. .++....++. . ..
T Consensus 316 --~~~~g~v~~vd~~~~~~~~-v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-t~kl~~~i~vgg---~~ 386 (567)
T 1qks_A 316 --VKETGKILLVDYTDLNNLK-TTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKLVAIEDTGG---QT 386 (567)
T ss_dssp --ETTTTEEEEEETTCSSEEE-EEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSS---SS
T ss_pred --ecCCCeEEEEecCCCccce-eeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECC-CCcEEEEEeccC---cC
Confidence 1235677777765432111 1111 234456788999999988765 78999999999 5666666543 2 12
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEe-CCCeEEEEEccCCccc---ccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALC---DHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 336 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 336 (497)
.|.+.-..+ ++|++...++++. .++.|.++|...++.. .+.++.+.. ....-..+..+|+++
T Consensus 387 Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-------------~g~g~~~i~~~p~~~ 452 (567)
T 1qks_A 387 PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-------------LGGGSLFIKTHPNSQ 452 (567)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-------------SCSCCCCEECCTTCS
T ss_pred CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-------------CCCCCEEEEeCCCCC
Confidence 343222222 6887524555554 4689999999874321 111122222 012234577899999
Q ss_pred EEEEEe--------cCeEEEEecCCC-----CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe----
Q 010933 337 HLLSRD--------YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS---- 399 (497)
Q Consensus 337 ~l~~~~--------~~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~---- 399 (497)
++.+.. ...|.++|+.+. .+....+...+- ..+.+ ....+..+.|+|+|+++....
T Consensus 453 ~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~G~~~~~s~~~~~ 525 (567)
T 1qks_A 453 YLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW-----AGITE--GQPRVVQGEFNKDGTEVWFSVWNGK 525 (567)
T ss_dssp EEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH-----HTCCS--SCCEEEEEEECTTSSEEEEEEECCT
T ss_pred eEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccc-----cccCC--CCcceEeeeECCCCCEEEEEeecCC
Confidence 998864 259999999863 222233321000 00000 000125899999999877653
Q ss_pred -CCCcEEEEEcCCCCcceEEEe
Q 010933 400 -YSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 400 -~dg~i~vw~~~~~~~~~~~~~ 420 (497)
.++.|.|+|.++.+. ...++
T Consensus 526 ~~~~~i~v~D~~t~~~-~~~i~ 546 (567)
T 1qks_A 526 DQESALVVVDDKTLEL-KHVIK 546 (567)
T ss_dssp TSCCEEEEEETTTTEE-EEEEC
T ss_pred CCCCcEEEEECCCceE-EEEeC
Confidence 379999999998743 34444
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=2.6e-10 Score=103.79 Aligned_cols=237 Identities=8% Similarity=0.029 Sum_probs=159.7
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...+.+++++++|++.++...++.|.+||.. ++. .. ..+..+. ..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~---------------------~~-~~~~~~~------------~~ 63 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI---------------------KE-FEVPTPD------------AK 63 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------------------EE-EECSSTT------------CC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce---------------------EE-EECCCCC------------Cc
Confidence 4578899999999988877678999999976 432 11 0111222 55
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
+..+++ ++++..+++...++.|..||.. ++.....
T Consensus 64 ~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~------------------------------------------ 98 (300)
T 2qc5_A 64 VMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEYP------------------------------------------ 98 (300)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEE------------------------------------------
T ss_pred ceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEec------------------------------------------
Confidence 888988 6788777776667889999876 4422110
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
.......+.++++.++|+++++. .++.|..||.. .. ..... +......+..++
T Consensus 99 ------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~------~~~~~~~~~~i~ 152 (300)
T 2qc5_A 99 ------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IYEYD------LPNKGSYPAFIT 152 (300)
T ss_dssp ------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EEEEE------CSSTTCCEEEEE
T ss_pred ------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EEEcc------CCCCCCCceeEE
Confidence 01223567889999999988888 78899999987 33 22221 223445789999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lw 349 (497)
+++++ +++++...++.|..+|. +++.. .+.. ..+...+..++++++|++.++... +.|.+|
T Consensus 153 ~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 153 LGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPL-----------PTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp ECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred ECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeC-----------CCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 99999 76666666789999998 44322 1111 011245788999999987776644 789999
Q ss_pred ecCCCCceeee-eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933 350 DIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 350 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
|.. ++.... +..... ...+++++++|+++++...++.|..|+.
T Consensus 215 ~~~--g~~~~~~~~~~~~---------------~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 215 TTT--GEISEYDIPTPNA---------------RPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp CTT--CCEEEEECSSTTC---------------CEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred cCC--CcEEEEECCCCCC---------------CceEEEECCCCCEEEeccCCCeEEEECC
Confidence 983 443322 111111 1258999999997777767799999997
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.48 E-value=2.3e-11 Score=109.17 Aligned_cols=198 Identities=11% Similarity=0.068 Sum_probs=140.5
Q ss_pred CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCc
Q 010933 122 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 201 (497)
Q Consensus 122 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (497)
.++.|++++.|+.|.+||.++++... ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w------------------------------------------------~~---- 31 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVW------------------------------------------------EY---- 31 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEE------------------------------------------------EE----
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEE------------------------------------------------Ee----
Confidence 45789999999999999998887433 21
Q ss_pred cceeeeeeccCCC-CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933 202 HARCQKVYPHAHD-FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 280 (497)
Q Consensus 202 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 280 (497)
..+. ..+.++.+.|+|++++ +.++.|+.||.. ++...+. . . +....+.++.+.++| ++++
T Consensus 32 ---------~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~-G~~~W~~-~-----~-~~~~~~~~~~~~~dG-~~lv 92 (276)
T 3no2_A 32 ---------PLEKGWECNSVAATKAGEILF-SYSKGAKMITRD-GRELWNI-A-----A-PAGCEMQTARILPDG-NALV 92 (276)
T ss_dssp ---------ECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT-SCEEEEE-E-----C-CTTCEEEEEEECTTS-CEEE
T ss_pred ---------CCCccCCCcCeEECCCCCEEE-eCCCCEEEECCC-CCEEEEE-c-----C-CCCccccccEECCCC-CEEE
Confidence 1222 3577889999999888 556779999984 5544332 1 1 123467889999999 8888
Q ss_pred EEeC-CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCcee
Q 010933 281 YSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV 358 (497)
Q Consensus 281 ~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~ 358 (497)
+.+. ++.|..+|. +++.+ ..+..... ...+......+++.++|+++++... +.|..||.. ++.+
T Consensus 93 ~~~~~~~~v~~vd~-~Gk~l----~~~~~~~~-------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~ 158 (276)
T 3no2_A 93 AWCGHPSTILEVNM-KGEVL----SKTEFETG-------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLL 158 (276)
T ss_dssp EEESTTEEEEEECT-TSCEE----EEEEECCS-------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEE
T ss_pred EecCCCCEEEEEeC-CCCEE----EEEeccCC-------CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEE
Confidence 8877 788888885 55543 22221000 0011124556678899999998854 999999985 8888
Q ss_pred eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933 359 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 421 (497)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 421 (497)
.++...... .++.+.++|+++++++.+++|..+|..+++.+ ..+..
T Consensus 159 w~~~~~~~~----------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~-w~~~~ 204 (276)
T 3no2_A 159 NSVKLSGTP----------------FSSAFLDNGDCLVACGDAHCFVQLNLESNRIV-RRVNA 204 (276)
T ss_dssp EEEECSSCC----------------CEEEECTTSCEEEECBTTSEEEEECTTTCCEE-EEEEG
T ss_pred EEEECCCCc----------------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE-EEecC
Confidence 888765332 46888999999999999999999999988554 55543
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=5.4e-11 Score=106.70 Aligned_cols=197 Identities=9% Similarity=0.027 Sum_probs=128.1
Q ss_pred ceeEEEEEecCCCCEEE-EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 111 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
...++++ ++++..++ +.+.++.|.+|+..+......
T Consensus 25 ~p~~i~~--~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~----------------------------------------- 61 (270)
T 1rwi_B 25 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTTVL----------------------------------------- 61 (270)
T ss_dssp CEEEEEE--CTTCCEEEEECSSSCEEEEECC-----EEC-----------------------------------------
T ss_pred CccceEE--CCCCCEEEEccCCCCcEEEecCCCcccceE-----------------------------------------
Confidence 5788999 67888666 446788999998755432111
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
...+...+.++++.++|+++++..++.|.+||.. +...... .......+..+
T Consensus 62 --------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~-~~~~~~~-------~~~~~~~p~~i 113 (270)
T 1rwi_B 62 --------------------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG-SNNQTVL-------PFDGLNYPEGL 113 (270)
T ss_dssp --------------------CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTT-CSCCEEC-------CCCSCSSEEEE
T ss_pred --------------------eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC-CceEeee-------ecCCcCCCcce
Confidence 0122345678999999985555578899999987 3332221 11223568999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 348 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~l 348 (497)
+++++| +++++...++.|.+|+..+.... .... .....+..++++++|+++++... +.|.+
T Consensus 114 ~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~-----~~~~------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 114 AVDTQG-AVYVADRGNNRVVKLAAGSKTQT-----VLPF------------TGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp EECTTC-CEEEEEGGGTEEEEECTTCCSCE-----ECCC------------CSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred EECCCC-CEEEEECCCCEEEEEECCCceeE-----eecc------------ccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 999999 77777777889999976543221 0000 01135788999999987766643 89999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
||... .........+.. ...+++++++|.++++...++.|.+|+....
T Consensus 176 ~~~~~-~~~~~~~~~~~~---------------~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 176 LEAES-NNQVVLPFTDIT---------------APWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp ECTTT-CCEEECCCSSCC---------------SEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred EecCC-CceEeecccCCC---------------CceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 99874 332221111111 1158999999988777778899999998654
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.47 E-value=2.1e-11 Score=112.71 Aligned_cols=248 Identities=8% Similarity=0.065 Sum_probs=155.1
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
.....+.+. ++++.++...++.|.+||..+++. +.++.. . ...
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-----------------------~~~i~~-~------------~~p 86 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-----------------------VGRITG-F------------TSP 86 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEEC-C------------SSE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-----------------------EEEcCC-C------------CCC
Confidence 345677774 345555556678999999988753 333432 2 447
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
..+++ ++++..+++...++.|.+||..+++..........
T Consensus 87 ~~i~~--~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------------------------------------- 126 (328)
T 3dsm_A 87 RYIHF--LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-------------------------------------- 126 (328)
T ss_dssp EEEEE--EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC--------------------------------------
T ss_pred cEEEE--eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc--------------------------------------
Confidence 88888 45664444444899999999988775432111000
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
.+.......+++ .+++.+++. . ++.|.++|.. .++....+.. ......++
T Consensus 127 ------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~-t~~~~~~i~~--------g~~p~~i~ 178 (328)
T 3dsm_A 127 ------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE-TDKVVDELTI--------GIQPTSLV 178 (328)
T ss_dssp ------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT-TTEEEEEEEC--------SSCBCCCE
T ss_pred ------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC-CCeEEEEEEc--------CCCccceE
Confidence 011113344556 445555555 3 8999999998 4555554321 12346788
Q ss_pred EeCCCCcEEEEEeCC----------CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 271 FHPIYCNLLAYSSSR----------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 271 ~~~~~~~~l~~~~~d----------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
++|+| ++++++..+ +.|.++|..+++.. +.+.... ......++++|++++|.+
T Consensus 179 ~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~~------------g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 179 MDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFKL------------GDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp ECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECCT------------TCCCEEEEECTTSCEEEE
T ss_pred EcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecCC------------CCCceeEEEecCCCEEEE
Confidence 99998 766666554 78999999887643 2222100 125789999999999888
Q ss_pred EecCeEEEEecCCCCceee-e-eeecccccccccccCCCCCccceeEEEEcC-CCCEEEEE----eCCCcEEEEEcCCCC
Q 010933 341 RDYMNLKLWDIRMDSTPVA-T-FKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG----SYSNLLRIFSHGVGS 413 (497)
Q Consensus 341 ~~~~~i~lwd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~----~~dg~i~vw~~~~~~ 413 (497)
+.. .|.+||..+ ++... . +...... ...++++| ++.++++. ..++.|.+||.+ ++
T Consensus 242 ~~~-~v~~~d~~t-~~~~~~~~~~~~~~~---------------p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 242 INN-DIWRMPVEA-DRVPVRPFLEFRDTK---------------YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp ESS-SEEEEETTC-SSCCSSCSBCCCSSC---------------EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred Ecc-EEEEEECCC-CceeeeeeecCCCCc---------------eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 754 899999975 44321 1 1111010 15899999 55555665 578999999987 64
Q ss_pred cceEEEec
Q 010933 414 AGGITVEA 421 (497)
Q Consensus 414 ~~~~~~~~ 421 (497)
.+ ..+..
T Consensus 304 ~~-~~i~~ 310 (328)
T 3dsm_A 304 LI-DEFYV 310 (328)
T ss_dssp EE-EEEEE
T ss_pred EE-EEEEe
Confidence 43 55543
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=1.2e-11 Score=127.69 Aligned_cols=236 Identities=9% Similarity=0.012 Sum_probs=144.4
Q ss_pred CCCCCeeEEEeCCCCCEEEEE-cC-----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC
Q 010933 212 AHDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 285 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 285 (497)
+|...+..++|||||+.|+.+ .+ ..|++||+. +++..... . +...+..++|+|+ +.|+.++.+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~-tg~~~~~~------~--~~~~~~~~~wspD--~~l~~~~~~ 228 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA-DGKPLADE------L--KWVKFSGLAWLGN--DALLYSRFA 228 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT-TCCEEEEE------E--EEEESCCCEESTT--SEEEEEECC
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC-CCCCCCcc------C--CCceeccEEEECC--CEEEEEEec
Confidence 344467889999999999886 32 369999999 44443320 1 1122357899999 455555554
Q ss_pred C--------------eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-----Ce
Q 010933 286 G--------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-----MN 345 (497)
Q Consensus 286 g--------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-----~~ 345 (497)
+ .|++|++.++..... .++.. ..+...+..+.|+|||++|+... + ..
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~-----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQ--PVFAT-----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNT 295 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGCE--EEECC-----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred CcccccccccCCCCCEEEEEECCCCchhCE--EEecc-----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence 3 388999876642111 12222 11123478899999999888753 2 38
Q ss_pred EEEEecCCCCc-e-eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC----CcEEEEEcCCCC-cceEE
Q 010933 346 LKLWDIRMDST-P-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS----NLLRIFSHGVGS-AGGIT 418 (497)
Q Consensus 346 i~lwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d----g~i~vw~~~~~~-~~~~~ 418 (497)
|++||+.. +. . ...+..+.... ... ++|+|+.|+..+.+ +.|.+|++.++. .....
T Consensus 296 l~~~d~~~-~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l 358 (741)
T 1yr2_A 296 VHVARVTN-GKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV 358 (741)
T ss_dssp EEEEEEET-TEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE
T ss_pred EEEEECCC-CCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE
Confidence 99999975 31 2 44454443321 233 45899988877763 459999988752 33344
Q ss_pred EeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--C-CCCCccccc-ccCCCeEEEEEecCCCEEEEEe-----
Q 010933 419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELSY-NLSSKLLHLAWHPTTNLIACAN----- 488 (497)
Q Consensus 419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~-~~~~~~~~~-~~~~~i~~l~~~p~~~~la~~~----- 488 (497)
+..+...+..+.+. ++.+ +++...++. ++| . .++....+. .....|..++++|+++.|+...
T Consensus 359 ~~~~~~~l~~~~~~---~~~l-----v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 359 VPESKDNLESVGIA---GNRL-----FASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp ECCCSSEEEEEEEE---BTEE-----EEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred ecCCCCeEEEEEEE---CCEE-----EEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 45555555556554 3334 778888888 888 2 233222222 2356788999999998766443
Q ss_pred CCceEEEe
Q 010933 489 GNSLFFHY 496 (497)
Q Consensus 489 ~~~~~i~~ 496 (497)
...+|.|+
T Consensus 431 P~~i~~~d 438 (741)
T 1yr2_A 431 PATVLALD 438 (741)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEE
Confidence 24577775
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=1.3e-10 Score=106.66 Aligned_cols=206 Identities=12% Similarity=0.042 Sum_probs=130.3
Q ss_pred cceeEEEEEecCCCCEEEE-------EeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 110 EKINRVRWCAAPNGSMFIL-------STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s-------~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
....+++| ++++..+++ ...++.|.+|+..+++......
T Consensus 18 ~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------------------------------- 63 (314)
T 1pjx_A 18 PGAEGPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-------------------------------- 63 (314)
T ss_dssp TTCEEEEE--CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--------------------------------
T ss_pred CCccCceE--CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe--------------------------------
Confidence 44678999 678877777 5678899999987666432110
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEEcCCeEEEEeCccCceeeEE-eecCCCccC
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNI-VDMKPSNMD 260 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~ 260 (497)
.. ..++...+.+++++++ |+++++...+.|.+||.+ .. .... ... ...
T Consensus 64 ------------------------~~-~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~-~~~~~~~~---~~~ 113 (314)
T 1pjx_A 64 ------------------------PE-VNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GT-FEEIAKKD---SEG 113 (314)
T ss_dssp ------------------------CE-ETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SC-EEECCSBC---TTS
T ss_pred ------------------------cc-cCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CC-EEEEEecc---CCC
Confidence 00 0234456889999999 776666655578999987 33 2221 100 001
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCC---------------CeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSR---------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 325 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~d---------------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (497)
.....+.+++++++| +++++...+ +.|..||.. ++.. ..... ...
T Consensus 114 ~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~----~~~~~--------------~~~ 173 (314)
T 1pjx_A 114 RRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI----QVDTA--------------FQF 173 (314)
T ss_dssp CBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE----EEEEE--------------ESS
T ss_pred ccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE----EeccC--------------CCC
Confidence 123457899999999 777766554 567777765 3321 11111 134
Q ss_pred ccEEEEe----eCCCEEEEE-e-cCeEEEEecCCCCce-----eeeeeecc-cccccccccCCCCCccceeEEEEcCCCC
Q 010933 326 ISDIKFA----NDGQHLLSR-D-YMNLKLWDIRMDSTP-----VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGL 393 (497)
Q Consensus 326 i~~~~~s----~~g~~l~~~-~-~~~i~lwd~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 393 (497)
...++++ |+++.+..+ . ++.|.+||+...++. ...+..+. .. ...++++++|+
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------p~~i~~d~~G~ 238 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG---------------ADGMDFDEDNN 238 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE---------------EEEEEEBTTCC
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC---------------CCceEECCCCC
Confidence 5788999 999766655 3 389999998622332 11222111 11 15799999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCc
Q 010933 394 HFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 394 ~l~s~~~dg~i~vw~~~~~~~ 414 (497)
++++...++.|.+||.++++.
T Consensus 239 l~v~~~~~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp EEEEEETTTEEEEECTTCBSC
T ss_pred EEEEEcCCCEEEEEcCCCCcE
Confidence 888888889999999876643
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.41 E-value=6.8e-10 Score=104.06 Aligned_cols=256 Identities=10% Similarity=0.071 Sum_probs=151.0
Q ss_pred EEEEcCCCCEEEEee----------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccccc-Ccccccccc
Q 010933 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFDYLKS 105 (497)
Q Consensus 37 ~i~~sp~g~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 105 (497)
.++|||||++|+++. .++.|.+||..+.+. +.++.-- ...+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-----------------------~~~i~~~~~~~~----- 121 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-----------------------IADIELPDAPRF----- 121 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE-----------------------EEEEECCCcccc-----
Confidence 899999999998876 367899999977543 1111100 0000
Q ss_pred cccccceeEEEEEecCCCCEEEEEeC--CccEEEeecCchheecc-ccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~--d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
.....-..++| +|||++|+.++. ++.|.++| .+++.... ..
T Consensus 122 -~~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-------------------------------- 165 (373)
T 2mad_H 122 -DVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-------------------------------- 165 (373)
T ss_pred -ccCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--------------------------------
Confidence 00011346888 789999998874 57899999 87764321 10
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 260 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (497)
... ++.+.|+++ .+++. .||.+.++|. ..+. .......+. ..
T Consensus 166 ------------------------------~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~~-~~ 209 (373)
T 2mad_H 166 ------------------------------SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGAM-LT 209 (373)
T ss_pred ------------------------------CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE-EEEEecccc-cc
Confidence 001 133445443 33444 7888999988 3433 322111100 11
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
+.........+.+++ ..++..+.++.+.+.|+..+.... ...+....... ... .-.......+.++|+++.+++
T Consensus 210 ~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~-~~~--~~~p~g~~~~~~s~d~~~lyV 283 (373)
T 2mad_H 210 AAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGR-KAD--TWRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred CCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCcc-ccc--ceecCceEeEEECCCCCEEEE
Confidence 111112335667776 455555578899999997643210 01121100000 000 000123445789999987776
Q ss_pred Ee-----------cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEe-CCCcEEEE
Q 010933 341 RD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIF 407 (497)
Q Consensus 341 ~~-----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~i~vw 407 (497)
+. .+.|.++|+.+ .+.+.++...... ..++|+|||+ +++++. .++.|.+|
T Consensus 284 ~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg~~~l~v~~~~~~~V~Vi 346 (373)
T 2mad_H 284 LTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDGGPDLYALSAGTEVLHIY 346 (373)
T ss_pred EeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCCCeEEEEEcCCCCeEEEE
Confidence 42 15799999987 8888888655433 5899999999 777777 48999999
Q ss_pred EcCCCCcc
Q 010933 408 SHGVGSAG 415 (497)
Q Consensus 408 ~~~~~~~~ 415 (497)
|..+++.+
T Consensus 347 D~~t~~vv 354 (373)
T 2mad_H 347 DAGAGDQD 354 (373)
T ss_pred ECCCCCEE
Confidence 99998655
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=1.7e-10 Score=105.04 Aligned_cols=232 Identities=9% Similarity=0.074 Sum_probs=146.1
Q ss_pred ceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 34 IVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 34 ~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
--.+..|+|+ +.++++...++.|..||..+++. ..+ ... ..+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~-~~~------------~~~ 56 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------------QRV-TMD------------APV 56 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------------EEE-ECS------------SCE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------------EEE-eCC------------Cce
Confidence 4458899995 45566666788999999877532 111 122 568
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
.++++ +++++++++ . ++.|.+||..+++...+.....
T Consensus 57 ~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~--------------------------------------- 93 (297)
T 3g4e_A 57 SSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN--------------------------------------- 93 (297)
T ss_dssp EEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT---------------------------------------
T ss_pred EEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC---------------------------------------
Confidence 89999 678885544 4 5678999988766433211000
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
......++.++++|+|+++++. .+ ..-.+|.+...+..... ...
T Consensus 94 ------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~ 147 (297)
T 3g4e_A 94 ------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY--------FDQ 147 (297)
T ss_dssp ------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE--------EEE
T ss_pred ------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE--------eec
Confidence 0112347789999999977764 32 23345554422332222 122
Q ss_pred CCCeEEEEEeCCCCcEE-EEEeCCCeEEEEEc--cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 263 TEVITSAEFHPIYCNLL-AYSSSRGFVRLVDM--RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l-~~~~~dg~i~v~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
......++|+|++ +.| ++.+.++.|.+||+ .++.... .+.+.. +..+......++++++|++.+
T Consensus 148 ~~~pngi~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~----------~~~~~~~p~g~~~d~~G~lwv 214 (297)
T 3g4e_A 148 VDISNGLDWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK----------LEKEEQIPDGMCIDAEGKLWV 214 (297)
T ss_dssp ESBEEEEEECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE----------CCGGGCEEEEEEEBTTSCEEE
T ss_pred cccccceEEcCCC-CEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE----------CCCCCCCCCeeEECCCCCEEE
Confidence 3446789999999 655 55566889999997 3443210 011111 011124567899999998777
Q ss_pred EEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc-CCCCEEEEEeC
Q 010933 340 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY 400 (497)
Q Consensus 340 ~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~ 400 (497)
+... +.|..||..+ ++.+..+..+...+ ++++|. |+++.|+.++.
T Consensus 215 a~~~~~~v~~~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 215 ACYNGGRVIRLDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEETTTEEEEECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEEB
T ss_pred EEcCCCEEEEEcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEcC
Confidence 7654 8899999976 78888887664322 689998 88887765554
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.39 E-value=1.2e-09 Score=99.27 Aligned_cols=239 Identities=8% Similarity=0.007 Sum_probs=156.9
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...+.+++++++|.+.++...++.|..|+.+. +. ... .+.... ..
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~---------------------~~~-~~~~~~------------~~ 100 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKKG-II---------------------KEY-TLPNPD------------SA 100 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE---------------------EEE-ECSSTT------------CC
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cE---------------------EEE-eCCCcC------------CC
Confidence 46789999999999888777688899998752 11 101 111122 55
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
+..+++ ++++.++++...++.|.+|+. +++.....
T Consensus 101 ~~~i~~--~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~------------------------------------------ 135 (299)
T 2z2n_A 101 PYGITE--GPNGDIWFTEMNGNRIGRITD-DGKIREYE------------------------------------------ 135 (299)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEE------------------------------------------
T ss_pred ceeeEE--CCCCCEEEEecCCceEEEECC-CCCEEEec------------------------------------------
Confidence 888998 678877777777888999987 44322110
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
...+...+..+++.++|+.+++. .++.|..||.. . +.... . .......+..++
T Consensus 136 ------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~~~~-~-----~~~~~~~~~~i~ 189 (299)
T 2z2n_A 136 ------------------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITES-G-DITEF-K-----IPTPASGPVGIT 189 (299)
T ss_dssp ------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEEEE-E-----CSSTTCCEEEEE
T ss_pred ------------------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC-C-cEEEe-e-----CCCCCCcceeEE
Confidence 02234467899999999888888 78999999983 3 33222 1 223445688999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lw 349 (497)
+++++ .++++...++.|.+||. +++.. .+.. ..+...+.+++++++|+++++. .++.|..|
T Consensus 190 ~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 251 (299)
T 2z2n_A 190 KGNDD-ALWFVEIIGNKIGRITT-SGEIT-----EFKI-----------PTPNARPHAITAGAGIDLWFTEWGANKIGRL 251 (299)
T ss_dssp ECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred ECCCC-CEEEEccCCceEEEECC-CCcEE-----EEEC-----------CCCCCCceeEEECCCCCEEEeccCCceEEEE
Confidence 99998 77776666889999998 55422 1111 0112457899999999876665 34899999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
|.. +. +..+...... ..+.++++ ++++++++.+ .+.|..++.+++
T Consensus 252 d~~--g~-~~~~~~~~~~-------------~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 252 TSN--NI-IEEYPIQIKS-------------AEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ETT--TE-EEEEECSSSS-------------CCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCC--Cc-eEEEeCCCCC-------------CccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 983 43 3333221110 01257888 8888777665 567777887654
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=7.3e-11 Score=120.69 Aligned_cols=246 Identities=13% Similarity=0.094 Sum_probs=147.7
Q ss_pred CCcceEEEEEcCCCCEEEEe-----ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVG-----DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
|...+..++|||||++||.+ +.+..|++||+++++. + ..+...
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-----------------------~---~~~~~~------ 174 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP-----------------------L---ETPLKD------ 174 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE-----------------------E---EEEEEE------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC-----------------------C---ccccCC------
Confidence 45678999999999999853 3335799999998753 1 111100
Q ss_pred cccccceeEEEEEecCCCCEEEEEeCCcc-------------EEEeecCchheeccccCCCCCccccccccccccCcccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 172 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (497)
.....++| + |++.|+.++.+.. |++|++.++...
T Consensus 175 ----~k~~~~~W--s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-------------------------- 221 (693)
T 3iuj_A 175 ----VKFSGISW--L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED-------------------------- 221 (693)
T ss_dssp ----EESCCCEE--E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG--------------------------
T ss_pred ----ceeccEEE--e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc--------------------------
Confidence 11356789 7 8889998887743 555555443210
Q ss_pred CCCCCcccccccccccCcceEEEeecCCccceeeeeeccC-CCCCeeEEEeCCCCCEEEEE-c----CCeEEEEeCccCc
Q 010933 173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-D----DLRINLWNLEISD 246 (497)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~----d~~i~iwd~~~~~ 246 (497)
...+... .. |...+.++.|+|||+.|+.. . +..|+++|+....
T Consensus 222 ------------------------------~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 222 ------------------------------DRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp ------------------------------CEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred ------------------------------ceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 0111111 23 45567889999999988653 2 3589999987443
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC---CeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
..... +..+....... +++++..+++....+ +.|..+|+.++... . .+.+.. |.
T Consensus 271 ~~~~~-------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~-~~~l~~-------------~~ 327 (693)
T 3iuj_A 271 APLLT-------VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-H-WRDLIP-------------ER 327 (693)
T ss_dssp CCCEE-------EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-G-CEEEEC-------------CC
T ss_pred CceEE-------EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-c-cEEEec-------------CC
Confidence 22322 23344455554 666662444444443 67999999876421 0 011211 12
Q ss_pred ccccEEEEeeCCCEEEEEe--cC--eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933 324 ASISDIKFANDGQHLLSRD--YM--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 399 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~--~~--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 399 (497)
..+. .|++++++|+... ++ .|++||+. +.....+...... . +..+.++++++.|+...
T Consensus 328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~~p~~~-----------~---~~~~~~~~d~~~l~~~~ 389 (693)
T 3iuj_A 328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREVALPGLG-----------S---VSGFNGKHDDPALYFGF 389 (693)
T ss_dssp SSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEECCSSSS-----------E---EEECCCCTTCSCEEEEE
T ss_pred CCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEeecCCCc-----------e---EEeeecCCCCCEEEEEe
Confidence 2333 8999999887753 33 78889886 4444444322211 0 13567778887776555
Q ss_pred CC----CcEEEEEcCCCC
Q 010933 400 YS----NLLRIFSHGVGS 413 (497)
Q Consensus 400 ~d----g~i~vw~~~~~~ 413 (497)
.+ +.|+.||+.+++
T Consensus 390 ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 390 ENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ECSSSCCEEEEECTTTCC
T ss_pred cCCCCCCEEEEEECCCCe
Confidence 44 789999988764
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.38 E-value=4.8e-10 Score=103.77 Aligned_cols=267 Identities=10% Similarity=0.037 Sum_probs=163.6
Q ss_pred EEEEcCCCCEEEEeec-----CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 37 AIEFDKTGDYLAVGDR-----GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 37 ~i~~sp~g~~lasg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
.....|+++.+.+... ++.|.+.|..+.+. +.++..-. .+
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-----------------------~~~I~vG~------------~P 81 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-----------------------IGMIDGGF------------LP 81 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-----------------------EEEEEECS------------SC
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-----------------------EEEEECCC------------CC
Confidence 3556799998888765 67999999987643 44444333 33
Q ss_pred eeEEEEEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccc
Q 010933 112 INRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 181 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (497)
.+++ +||+++++.++ .++.|.+||..+.+...........
T Consensus 82 --~va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~-------------------------- 131 (386)
T 3sjl_D 82 --NPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP-------------------------- 131 (386)
T ss_dssp --EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC--------------------------
T ss_pred --cEEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc--------------------------
Confidence 3888 78999888775 3678999999887754322110000
Q ss_pred cccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCccCceeeEEeecCCCc
Q 010933 182 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSN 258 (497)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~ 258 (497)
+ .........+.++|||+++..+ . ++.|.++|.. ..+....+.++
T Consensus 132 -------------------------r---~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~-t~~vv~tI~v~--- 179 (386)
T 3sjl_D 132 -------------------------R---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVP--- 179 (386)
T ss_dssp -------------------------C---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECC---
T ss_pred -------------------------c---cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC-CCcEEEEEECC---
Confidence 0 0012245568999999998876 4 6899999999 56666664322
Q ss_pred cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccc-cEEEEe-eCC
Q 010933 259 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASI-SDIKFA-NDG 335 (497)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s-~~g 335 (497)
+ +....|.+...+++.+.||.+.+.++.. ++......+.+.. -...+ ....|. ++|
T Consensus 180 --g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~-------------~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 180 --D------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------------EDEFLINHPAYSQKAG 238 (386)
T ss_dssp --S------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------------TTSCBCSCCEEETTTT
T ss_pred --C------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc-------------ccccccccceeEcCCC
Confidence 1 1122344436777888899999999876 4432100011110 01122 234664 678
Q ss_pred CEEEEEecCeEEEEecCCCC-ceeeeeeec------ccccccccccCCCCCccceeEEEEcCCCCEEEEEeC--------
Q 010933 336 QHLLSRDYMNLKLWDIRMDS-TPVATFKIH------EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-------- 400 (497)
Q Consensus 336 ~~l~~~~~~~i~lwd~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-------- 400 (497)
++++...+|.|++.|+.... +.+..+... .+..+. . ...++++++++.|+....
T Consensus 239 ~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~--------g---~q~~a~~~~~~~lyV~~~~~~~~~hk 307 (386)
T 3sjl_D 239 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG--------G---WQQVAYHRALDRIYLLVDQRDEWRHK 307 (386)
T ss_dssp EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC--------S---SSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCC--------C---cceeeECCCCCeEEEEeccccccccC
Confidence 77666556999999996422 233333200 000000 0 024888999998887653
Q ss_pred --CCcEEEEEcCCCCcceEEEeccCcceeeeEeecC
Q 010933 401 --SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 434 (497)
Q Consensus 401 --dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 434 (497)
.+.|.+.|+.+++.+ ..+... .+++.+++++.
T Consensus 308 ~~~~~V~viD~~t~kv~-~~i~vg-~~~~~lavs~D 341 (386)
T 3sjl_D 308 TASRFVVVLDAKTGERL-AKFEMG-HEIDSINVSQD 341 (386)
T ss_dssp SCEEEEEEEETTTCCEE-EEEEEE-EEECEEEECSS
T ss_pred CCCCEEEEEECCCCeEE-EEEECC-CCcceEEECCC
Confidence 257999999998665 444322 36789999984
No 206
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.36 E-value=2.6e-10 Score=104.28 Aligned_cols=233 Identities=9% Similarity=0.000 Sum_probs=150.3
Q ss_pred CCcceEEEEEcCCCC-EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 31 h~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.........|+|+|+ +++++..++.|..|+.. ++ ...+..+.
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~------------------------~~~~~~~~------------ 85 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT------------------------VDVLLDAT------------ 85 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC------------------------EEEEEESC------------
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC------------------------EEEEeCCC------------
Confidence 455677899999998 56667778999999874 32 12233333
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..+..+++ +++|+++++...++.|.+|+.. ++...+..
T Consensus 86 ~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~--------------------------------------- 123 (305)
T 3dr2_A 86 AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVG--------------------------------------- 123 (305)
T ss_dssp SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEEC---------------------------------------
T ss_pred CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEe---------------------------------------
Confidence 56889999 6888866665666889999875 44222100
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE----E-c-------------CCeEEEEeCccCceeeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQCFNI 251 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~-~-------------d~~i~iwd~~~~~~~~~~ 251 (497)
.........++++++.++|++.++ | . .+.|+.||.. .++....
T Consensus 124 ------------------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~~~~ 184 (305)
T 3dr2_A 124 ------------------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPLQRM 184 (305)
T ss_dssp ------------------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCCEEE
T ss_pred ------------------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCcEEEE
Confidence 000111234667899999998886 3 2 2567777765 3333222
Q ss_pred eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC------CeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933 252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 325 (497)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (497)
. .......++|+|++ +.|+++... +.|.+||+..+. .. ..+.+.. .....
T Consensus 185 --------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-~~~~~~~------------~~~~~ 240 (305)
T 3dr2_A 185 --------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGA-LH-DRRHFAS------------VPDGL 240 (305)
T ss_dssp --------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTE-EE-EEEEEEC------------CSSSC
T ss_pred --------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCC-cc-CCeEEEE------------CCCCC
Confidence 1 22456789999999 877777665 789999987643 11 0111111 01134
Q ss_pred ccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE
Q 010933 326 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 404 (497)
Q Consensus 326 i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 404 (497)
...++++++|++.++. .+.|.+|+.. ++.+..+...... .+++|+++++.|+.++.++..
T Consensus 241 pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 241 PDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp CCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEEEETTEEE
T ss_pred CCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEeCCCCEEEEEcCCeEE
Confidence 5678999999955554 4569999984 7777777655432 589999999988888876433
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.34 E-value=1.4e-09 Score=103.51 Aligned_cols=270 Identities=10% Similarity=0.037 Sum_probs=158.0
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
.....|+|+|+|+++++...++.|++||.+++.. ...... . ...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-----------------------~~~~~~-~------------~~~ 174 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-----------------------TTVHPG-F------------KGG 174 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-----------------------EEEEET-C------------CBC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-----------------------EEeecc-C------------CCC
Confidence 4678999999999888877789999999987643 111111 1 223
Q ss_pred eEEEEEecCCCCEEEEEeCCc--cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 113 NRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
. ++| +++++.|+++..++ .|.+|+..++......
T Consensus 175 ~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~----------------------------------------- 210 (409)
T 3hrp_A 175 K-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI----------------------------------------- 210 (409)
T ss_dssp B-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE-----------------------------------------
T ss_pred c-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEe-----------------------------------------
Confidence 4 888 68888888888765 6777776554321100
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe-E-
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI-T- 267 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i-~- 267 (497)
..+.......+.+++++|++..|..+ .++.|+.||... +.. ..+... ...+....- .
T Consensus 211 ----------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~-~~~-~~~~~~--~~~g~~~~~P~~ 270 (409)
T 3hrp_A 211 ----------------GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT-QEV-TLIKQL--ELSGSLGTNPGP 270 (409)
T ss_dssp ----------------EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT-CCE-EEEEEC--CCCSCCCCSSCC
T ss_pred ----------------eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC-CCE-EEEecc--cccCCCCCCccc
Confidence 00001134456788999954455557 888999999883 322 221000 011122222 3
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCc--cccccccccccEEEEeeCCCEEEEEe-c-
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK--SFFTEIIASISDIKFANDGQHLLSRD-Y- 343 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~g~~l~~~~-~- 343 (497)
.++|+|++..++++-..++.|+.|+.... . ..+.++....... ......-.....++++|+|+++++-. .
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~-----~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~ 344 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE-C-----EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG 344 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC-E-----EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCC-E-----EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence 99999964266666667899999997643 1 2222211000000 00000113468899999999777755 5
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
+.|+.|++.. +. +..+.++.....-...............+++++++.++++-..+++|+.++++
T Consensus 345 ~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 345 YCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp CEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 8999999764 44 45555441100000000000011123689999998888888888999888753
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.32 E-value=5.6e-09 Score=97.83 Aligned_cols=254 Identities=10% Similarity=-0.060 Sum_probs=143.5
Q ss_pred EEcCCCCEEEEeec--CC---eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933 39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 39 ~~sp~g~~lasg~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 113 (497)
...|+++++.+... .. .|.++|..+++. +.++..-. .+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~-----------------------~~~i~~g~------------~p-- 69 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-----------------------LGHVNGGF------------LP-- 69 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE-----------------------EEEecCCC------------CC--
Confidence 44578887777653 22 889999987643 33333222 32
Q ss_pred EEEEEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 114 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
.+++ +||+++++.+. .++.|.+||..+.+..........
T Consensus 70 ~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~----------------------------- 118 (373)
T 2mad_H 70 NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA----------------------------- 118 (373)
T ss_pred CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc-----------------------------
Confidence 7888 78999999886 367899999986654332111000
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCccCceeeEE-eecCCCcc
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSNM 259 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~~ 259 (497)
.. ..+......+.++|+|++|+.+ . ++.|.++| . .++.... +...
T Consensus 119 -----------------------~~--~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~~~---- 167 (373)
T 2mad_H 119 -----------------------PR--FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLSSP---- 167 (373)
T ss_pred -----------------------cc--cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C-CCCEEeEEcCCC----
Confidence 00 0011234578999999999886 3 57899999 7 5555543 3211
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE-E
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-L 338 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l 338 (497)
.++.+.|++...+++.+.||.+.++|. +++.... ..... .+.+.........+.+++.. +
T Consensus 168 -------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~----~~~~~-------~~~~~~p~~~~~~~~~~~~~~~ 228 (373)
T 2mad_H 168 -------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA----GLVGA-------MLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred -------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE----Eeccc-------cccCCcceeecceeEecCCEEE
Confidence 124556766567777888999999999 7654311 10000 00000011233556676554 3
Q ss_pred EEEecCeEEEEecCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC----------CCcEEEE
Q 010933 339 LSRDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIF 407 (497)
Q Consensus 339 ~~~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~----------dg~i~vw 407 (497)
+....+.+.+.|+.... +.+..+......... . .-.-.....+.++||++.|+++.. ++.|.++
T Consensus 229 ~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~---~--~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 229 WPVYSGKILQADISAAGATNKAPIDALSGGRKA---D--TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred EEcCCceEEEEeccCCcceEeeeeeecCCcccc---c--ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 44444899999986421 222222211100000 0 000000123788999888877653 3579999
Q ss_pred EcCCCCcc
Q 010933 408 SHGVGSAG 415 (497)
Q Consensus 408 ~~~~~~~~ 415 (497)
|..+++.+
T Consensus 304 D~~t~~vv 311 (373)
T 2mad_H 304 TGLVGQTS 311 (373)
T ss_pred ECCCCEEE
Confidence 99887443
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=4e-11 Score=111.39 Aligned_cols=189 Identities=10% Similarity=0.081 Sum_probs=126.0
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
..++.+++++.+.++++|+.+ .+++|+++..+. - +..-..++.......+.. |
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~-----~--------------------~~~~~~~~~~~~~~~lp~-V 90 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRD-----H--------------------ITSDSTPLTFKWEKEIPD-V 90 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHH-----H--------------------HHSSSCCCCCSEEEECTT-E
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhh-----h--------------------hccccccccceEEeeCCC-e
Confidence 479999999999999999987 577799865321 0 000000011111122236 9
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
+.|+| ++.+|+++ .++.|++||+.+......
T Consensus 91 ~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~-------------------------------------------- 121 (388)
T 1xip_A 91 IFVCF----HGDQVLVS-TRNALYSLDLEELSEFRT-------------------------------------------- 121 (388)
T ss_dssp EEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEE--------------------------------------------
T ss_pred eEEEE----CCCEEEEE-cCCcEEEEEchhhhccCc--------------------------------------------
Confidence 99999 67788888 889999999986542110
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 271 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (497)
...|...+.++.+.+.. ++++ .||.|.+||+. .+.... +...|++++|
T Consensus 122 -----------------~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~-~~~~~~-----------~~~~Vs~v~W 170 (388)
T 1xip_A 122 -----------------VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR-TKSTKQ-----------LAQNVTSFDV 170 (388)
T ss_dssp -----------------EEECSSCEEEEEECSSE--EEEEETTSEEEEEETT-TCCEEE-----------EEESEEEEEE
T ss_pred -----------------cceeecceeeEEecCCC--EEEEECCCCEEEEEcc-CCcccc-----------ccCCceEEEE
Confidence 02344557777765542 7777 99999999998 343322 3468999999
Q ss_pred eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccc---cccccccEEEEeeCCCEEEE
Q 010933 272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT---EIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~g~~l~~ 340 (497)
+|.| ++.|..||.+++|+...++...+ +.+.. . ..+. +|...+.++.|.+++.++++
T Consensus 171 SpkG---~~vg~~dg~i~~~~~~~~~~~~k--~~I~~-P------p~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 171 TNSQ---LAVLLKDRSFQSFAWRNGEMEKQ--FEFSL-P------SELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CSSE---EEEEETTSCEEEEEEETTEEEEE--EEECC-C------HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCc---eEEEEcCCcEEEEcCCCcccccc--ceecC-C------cccccccCCCeeEEEEEEecCCeEEEE
Confidence 9998 67899999999998877652100 22211 0 0011 24578999999999999887
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.31 E-value=1.9e-09 Score=99.74 Aligned_cols=139 Identities=12% Similarity=0.069 Sum_probs=85.3
Q ss_pred EEEe-CCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-----
Q 010933 269 AEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----- 342 (497)
Q Consensus 269 ~~~~-~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----- 342 (497)
..|. ++| + ++..+.+|.+++.|+.+..... .+.+..-... .... .-..+....++++++++.++...
T Consensus 231 ~~~~~~dG-~-~~~vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~-~~~~--g~~p~g~q~~a~~~~~~~lyV~~~~~~~ 303 (386)
T 3sjl_D 231 PAYSQKAG-R-LVWPTYTGKIHQIDLSSGDAKF--LPAVEALTEA-ERAD--GWRPGGWQQVAYHRALDRIYLLVDQRDE 303 (386)
T ss_dssp CEEETTTT-E-EEEEBTTSEEEEEECTTSSCEE--CCCEESSCHH-HHHT--TEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred ceeEcCCC-c-EEEEeCCCEEEEEECCCCccee--ecceeccccc-cccc--cccCCCcceeeECCCCCeEEEEeccccc
Confidence 3665 566 4 4446778999999997654210 0111100000 0000 00113456788899998887752
Q ss_pred ------cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEE-eCCCcEEEEEcCCCCc
Q 010933 343 ------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYSNLLRIFSHGVGSA 414 (497)
Q Consensus 343 ------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~-~~dg~i~vw~~~~~~~ 414 (497)
.+.|.++|+.+ .+.+.++...... +++++++|++ +|++. ..++.|.++|..+++.
T Consensus 304 ~~hk~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 304 WRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp TCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred cccCCCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 15799999997 8888888765432 5899999997 66664 4589999999999854
Q ss_pred ceEEEeccCcceeeeEeec
Q 010933 415 GGITVEAGKNENRKPILQA 433 (497)
Q Consensus 415 ~~~~~~~~~~~v~~~~~~~ 433 (497)
+ .++..-.. -+.+.+++
T Consensus 367 ~-~~i~~~~~-p~~l~~s~ 383 (386)
T 3sjl_D 367 L-RSVNQLGH-GPQVITTA 383 (386)
T ss_dssp E-EEECCCCS-SCCEEEEC
T ss_pred E-EEecCCCC-CceeEECC
Confidence 4 55543322 23445544
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=2.7e-09 Score=97.03 Aligned_cols=180 Identities=8% Similarity=0.082 Sum_probs=112.8
Q ss_pred CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC--------
Q 010933 214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-------- 285 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------- 285 (497)
...+.+++++++|+++++. ++.|.+||.+ .++...+.... .......+..++++|+| +++++...+
T Consensus 53 ~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~-~g~~~~~~~~~---~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~ 126 (297)
T 3g4e_A 53 DAPVSSVALRQSGGYVATI-GTKFCALNWK-EQSAVVLATVD---NDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLE 126 (297)
T ss_dssp SSCEEEEEEBTTSSEEEEE-TTEEEEEETT-TTEEEEEEECC---TTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCC
T ss_pred CCceEEEEECCCCCEEEEE-CCeEEEEECC-CCcEEEEEecC---CCCCCCCCCCEEECCCC-CEEEecCCccccccccc
Confidence 3468899999999955544 5689999987 44433322111 11123457899999999 766544321
Q ss_pred -CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecC-CCCcee--e
Q 010933 286 -GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR-MDSTPV--A 359 (497)
Q Consensus 286 -g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~-~~~~~~--~ 359 (497)
..-.+|.+....... ..... ....+.++|+|+++.|+.++ . +.|.+|++. ..+... +
T Consensus 127 ~~~~~l~~~d~~g~~~---~~~~~--------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~ 189 (297)
T 3g4e_A 127 RHQGALYSLFPDHHVK---KYFDQ--------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR 189 (297)
T ss_dssp TTCEEEEEECTTSCEE---EEEEE--------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE
T ss_pred CCCcEEEEEECCCCEE---EEeec--------------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE
Confidence 223444443221110 11111 13467899999999876653 3 899999974 224321 1
Q ss_pred ee---eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEee
Q 010933 360 TF---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 432 (497)
Q Consensus 360 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~ 432 (497)
.+ ...... ...++++++|++.++...++.|.+||.++++.+ ..+..+...+.+++|.
T Consensus 190 ~~~~~~~~~~~---------------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~-~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 190 SVYKLEKEEQI---------------PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL-QTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EEEECCGGGCE---------------EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE-EEEECSSSBEEEEEEE
T ss_pred EEEECCCCCCC---------------CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE-EEEECCCCCceEEEEe
Confidence 11 111111 157999999998888888889999999877544 6677776778888997
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.28 E-value=3.7e-09 Score=97.49 Aligned_cols=228 Identities=11% Similarity=0.021 Sum_probs=140.9
Q ss_pred ceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 34 ~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
......|+|++ .+++++..++.|..||..+++. ..+. .. ..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~~-~~------------~~v 92 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK------------------------TVHA-LP------------FMG 92 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE------------------------EEEE-CS------------SCE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE------------------------EEEE-CC------------Ccc
Confidence 34678999975 4556666788999999877532 1111 12 558
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
.+++| +++++++++. .++ |.+||..+++...+.....
T Consensus 93 ~~i~~--~~dg~l~v~~-~~g-l~~~d~~~g~~~~~~~~~~--------------------------------------- 129 (326)
T 2ghs_A 93 SALAK--ISDSKQLIAS-DDG-LFLRDTATGVLTLHAELES--------------------------------------- 129 (326)
T ss_dssp EEEEE--EETTEEEEEE-TTE-EEEEETTTCCEEEEECSST---------------------------------------
T ss_pred eEEEE--eCCCeEEEEE-CCC-EEEEECCCCcEEEEeeCCC---------------------------------------
Confidence 89999 4677766654 444 8889987766432210000
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC------CeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
......++++.++|+|+++++. .+ +.|+.++ .++.... ......
T Consensus 130 ------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---~g~~~~~--------~~~~~~ 180 (326)
T 2ghs_A 130 ------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---KGKVTKL--------FADISI 180 (326)
T ss_dssp ------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---TTEEEEE--------EEEESS
T ss_pred ------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---CCcEEEe--------eCCCcc
Confidence 0112357889999999977765 32 4555555 3433322 112234
Q ss_pred eEEEEEeCCCCcEEEEE-eCCCeEEEEEcc--CC-cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 266 ITSAEFHPIYCNLLAYS-SSRGFVRLVDMR--QS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~-~~dg~i~v~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
...++|+|++ +.|+.+ +.++.|.+||+. ++ ..... +.+.. +.........++++++|.+.++.
T Consensus 181 ~~~i~~s~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--~~~~~----------~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 181 PNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGKA--EVFID----------STGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp EEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSCC--EEEEE----------CTTSSSEEEEEEECTTSCEEEEE
T ss_pred cCCeEEcCCC-CEEEEEECCCCEEEEEEcccccCCcccCc--eEEEE----------CCCCCCCCCeeEECCCCCEEEEE
Confidence 6789999999 766544 557899999986 44 32110 11111 00112345789999999877776
Q ss_pred e-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc-CCCCEEEEEeC
Q 010933 342 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY 400 (497)
Q Consensus 342 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~ 400 (497)
. .+.|..||.. ++.+..+..+...+ ++++|+ ++++.|+.++.
T Consensus 248 ~~~~~v~~~d~~--g~~~~~i~~~~~~~---------------~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 248 WGEGAVDRYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ETTTEEEEECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEEEEEB
T ss_pred eCCCEEEEECCC--CCEEEEEECCCCCc---------------EEEEEecCCCCEEEEEec
Confidence 4 4889999983 66677666544322 689998 88877765544
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.25 E-value=2.9e-10 Score=105.70 Aligned_cols=193 Identities=7% Similarity=0.027 Sum_probs=124.8
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.+++.+++ ++...++++|+.++ +.+|++...+..... .. .
T Consensus 38 ~~~nlLai--s~~~gll~a~~~~~-l~v~~~~~l~~~~~~-~~--~---------------------------------- 77 (388)
T 1xip_A 38 ASLQNLDI--SNSKSLFVAASGSK-AVVGELQLLRDHITS-DS--T---------------------------------- 77 (388)
T ss_dssp SCCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHHHHHHS-SS--C----------------------------------
T ss_pred ccccEEEE--cCCCCEEEEeCCCE-EEEEEhhHhhhhhcc-cc--c----------------------------------
Confidence 45889999 57888999999985 566998765411100 00 0
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
..++... ..+.. |+.++| +++.|+++.++.|++||++...+... ...|+..+.++
T Consensus 78 ------------~~~~~~~--~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~~--------~~~~~~~v~~i 132 (388)
T 1xip_A 78 ------------PLTFKWE--KEIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFRT--------VTSFEKPVFQL 132 (388)
T ss_dssp ------------CCCCSEE--EECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEEE--------EEECSSCEEEE
T ss_pred ------------cccceEE--eeCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccCc--------cceeecceeeE
Confidence 0011111 23555 999999 99999999889999999984432221 33456678877
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 349 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lw 349 (497)
.+.+. .+++++.||.|.+||+.++... .. ...|++++|||+| +.+...+|.+++|
T Consensus 133 ~~~~p---~~av~~~dG~L~v~dl~~~~~~----~~-----------------~~~Vs~v~WSpkG-~~vg~~dg~i~~~ 187 (388)
T 1xip_A 133 KNVNN---TLVILNSVNDLSALDLRTKSTK----QL-----------------AQNVTSFDVTNSQ-LAVLLKDRSFQSF 187 (388)
T ss_dssp EECSS---EEEEEETTSEEEEEETTTCCEE----EE-----------------EESEEEEEECSSE-EEEEETTSCEEEE
T ss_pred EecCC---CEEEEECCCCEEEEEccCCccc----cc-----------------cCCceEEEEcCCc-eEEEEcCCcEEEE
Confidence 76654 3888999999999999976532 11 2469999999999 4444467999999
Q ss_pred ecCCCCce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933 350 DIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 399 (497)
Q Consensus 350 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 399 (497)
+... ... ..++....... .+.+.-+.+.++.|.++++++++-+
T Consensus 188 ~~~~-~~~~~k~~I~~Pp~~~------~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 188 AWRN-GEMEKQFEFSLPSELE------ELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEET-TEEEEEEEECCCHHHH------TSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCC-ccccccceecCCcccc------cccCCCeeEEEEEEecCCeEEEEEc
Confidence 8874 443 44452211000 0000012247999999999988643
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=2.9e-09 Score=97.22 Aligned_cols=233 Identities=11% Similarity=-0.000 Sum_probs=144.4
Q ss_pred CCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933 213 HDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 290 (497)
Q Consensus 213 h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 290 (497)
.........|+|+|+ +++++ .++.|..|+.. +. . .. +..+...+..++++++| +++++...++.|.+
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~-~~-------~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V-DV-------LLDATAFTNGNAVDAQQ-RLVHCEHGRRAITR 111 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-E-EE-------EEESCSCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E-EE-------EeCCCCccceeeECCCC-CEEEEECCCCEEEE
Confidence 344567899999998 55667 88999999875 33 2 22 22345678999999999 76666556688999
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE----Ee--------------cCeEEEEecC
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----RD--------------YMNLKLWDIR 352 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~----~~--------------~~~i~lwd~~ 352 (497)
||.. ++. ..+...... .....++.++++|+|+++++ |. .+.|..||..
T Consensus 112 ~~~~-g~~-----~~~~~~~~~--------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 112 SDAD-GQA-----HLLVGRYAG--------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp ECTT-SCE-----EEEECEETT--------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred ECCC-CCE-----EEEEeccCC--------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 9975 432 111110000 00134778999999998886 32 1456677765
Q ss_pred CCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC------CcEEEEEcCCCCcce-EEE-eccCc
Q 010933 353 MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSHGVGSAGG-ITV-EAGKN 424 (497)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d------g~i~vw~~~~~~~~~-~~~-~~~~~ 424 (497)
+ ++..... ..... ..++|+||++.|+.+... +.|++|++..+.... ..+ .....
T Consensus 178 ~-g~~~~~~-~~~~p----------------~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 178 G-SPLQRMA-DLDHP----------------NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp S-CCCEEEE-EESSE----------------EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred C-CcEEEEe-cCCCC----------------cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 3 4433222 21111 579999999988877665 789999987653110 111 11122
Q ss_pred ceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 425 ENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
....+++.+ ++. +..+..++..+|...............+.+++|+|+++.|.+++.++++.+.
T Consensus 240 ~pdgi~~d~--~G~------lwv~~~~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 240 LPDGFCVDR--GGW------LWSSSGTGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp CCCSEEECT--TSC------EEECCSSEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CCCeEEECC--CCC------EEEecCCcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 334555554 333 3334444446665444333333333468899999999999999988888764
No 215
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.25 E-value=2.1e-08 Score=91.05 Aligned_cols=237 Identities=8% Similarity=-0.018 Sum_probs=153.8
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...+.+++++++|++.++...++.|..||.. ++. . ...+.... ..
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~---------------------~-~~~~~~~~------------~~ 105 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF---------------------T-EYPLPQPD------------SG 105 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------------------E-EEECSSTT------------CC
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe---------------------E-EecCCCCC------------CC
Confidence 3578899999999988776667889999876 421 1 01111122 45
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
+..+++ ++++.++++...++.|..|+.. ++.....
T Consensus 106 ~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~------------------------------------------ 140 (300)
T 2qc5_A 106 PYGITE--GLNGDIWFTQLNGDRIGKLTAD-GTIYEYD------------------------------------------ 140 (300)
T ss_dssp EEEEEE--CSTTCEEEEETTTTEEEEECTT-SCEEEEE------------------------------------------
T ss_pred CccceE--CCCCCEEEEccCCCeEEEECCC-CCEEEcc------------------------------------------
Confidence 788998 6778777777667889888876 4422110
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
.......+..+++.++|++.++. .++.|..|+.. .. .... . .......+..++
T Consensus 141 ------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~-~-----~~~~~~~~~~i~ 194 (300)
T 2qc5_A 141 ------------------LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK-LEEY-P-----LPTNAAAPVGIT 194 (300)
T ss_dssp ------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEE-E-----CSSTTCCEEEEE
T ss_pred ------------------CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc-EEEe-e-----CCCCCCCcceEE
Confidence 02233467889999999977777 68899999984 33 2222 1 233446789999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw 349 (497)
+++++ .++++....+.|.+||. +++.. .+.. ..+...+.+++++++|++.++.. .+.|..|
T Consensus 195 ~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 195 SGNDG-ALWFVEIMGNKIGRITT-TGEIS-----EYDI-----------PTPNARPHAITAGKNSEIWFTEWGANQIGRI 256 (300)
T ss_dssp ECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred ECCCC-CEEEEccCCCEEEEEcC-CCcEE-----EEEC-----------CCCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence 99998 77776666788999998 44322 1111 01124578899999998666664 4899999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
|.. ++.. .+....... . +.+++++++|+++++.. . .|..++.+
T Consensus 257 ~~~--g~~~-~~~~~~~~~----------~---~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 257 TND--NTIQ-EYQLQTENA----------E---PHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CTT--SCEE-EEECCSTTC----------C---CCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCC--CcEE-EEECCccCC----------c---cceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 983 4322 332211100 1 15799999998666555 4 77777653
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.24 E-value=1.2e-09 Score=101.60 Aligned_cols=275 Identities=7% Similarity=-0.015 Sum_probs=158.4
Q ss_pred cceEEEEEcCCCCEEEEee--cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 33 DIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
..+..++++|+|+++++.. .++.++||.+.+++.. ..|... ....+|- .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---------------~~p~~~--~~~~~~~------------~ 67 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---------------PFPPQS--GNAIITF------------D 67 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---------------ESCCCC--SSCCCCC------------S
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---------------cCCCcc--cCcccce------------e
Confidence 5788999999999988864 2343667766544220 011100 1111233 6
Q ss_pred ceeEEEEEecCCCCEEEEEeC-----CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 111 KINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
.+..+++ +++++++++-.. ++.|.+||+.+++...........
T Consensus 68 ~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~------------------------------ 115 (343)
T 2qe8_A 68 TVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI------------------------------ 115 (343)
T ss_dssp CEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT------------------------------
T ss_pred EeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh------------------------------
Confidence 7899999 677765555433 578999999877644322111000
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-----cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMD 260 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (497)
..+...+..+++++++..+..+ .++.|.+||.. .++...+ +.
T Consensus 116 -------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~-~g~~~r~-------~~ 162 (343)
T 2qe8_A 116 -------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ-TGLAARV-------LQ 162 (343)
T ss_dssp -------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT-TCCEEEE-------CT
T ss_pred -------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC-CCCEEEE-------ec
Confidence 1233456789999865555443 36799999998 4555444 22
Q ss_pred CCCCCeE-EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 261 DLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 261 ~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
+|..... ...+.++| ..+.+.+.++.++.|. ..++.++|+|+|+.|+
T Consensus 163 ~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~-------------------------------~~~~gia~s~dg~~ly 210 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH-------------------------------LGVNGIVLDAENEWLY 210 (343)
T ss_dssp TCTTTSCCSCCCEETT-EECBEECTTSCEECCC-------------------------------CCEEEEEECTTSCEEE
T ss_pred CCCcccccccceeECC-EEEEeccCCCceecee-------------------------------cccceeEeccCCCEEE
Confidence 2211100 13345566 6677677777665442 1257799999999888
Q ss_pred EEec--CeEEEEecCC--CCc-----eee--eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 340 SRDY--MNLKLWDIRM--DST-----PVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 340 ~~~~--~~i~lwd~~~--~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
.++. ..+..++... .+. ... ...++.... ..++++++|.++++...++.|.+||
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p---------------dgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC---------------DGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC---------------SCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC---------------ceEEECCCCCEEEEccCCCeEEEEE
Confidence 8754 4555554321 011 000 111121110 3799999999999999999999999
Q ss_pred cCCCCcceEEEec-cCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 409 HGVGSAGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 409 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
..+++ ....... +......+++.+ ++.+ +++.+..+. .+|
T Consensus 276 ~~~G~-~~~~~~~~~~~~p~~va~~~--~g~l-----~v~~~~~~~~~~f 317 (343)
T 2qe8_A 276 SADRA-YKLLVTDEKLSWTDSFNFGS--DGYL-----YFDCNQLHHSAPL 317 (343)
T ss_dssp TTTTE-EEEEEECGGGSCEEEEEECT--TSCE-----EEEECCGGGSGGG
T ss_pred CCCCC-EEEEEECCceecCCeeEECC--CCcE-----EEEeCcccccccc
Confidence 85553 2222221 234567788876 4444 555544433 444
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=6.6e-09 Score=97.93 Aligned_cols=297 Identities=9% Similarity=0.048 Sum_probs=174.4
Q ss_pred CCCCEEEEeecC-----CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933 42 KTGDYLAVGDRG-----GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 116 (497)
Q Consensus 42 p~g~~lasg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~ 116 (497)
|+++++++.... +.|.++|..+.+. +.++..-. .+ .++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v-----------------------v~~I~vG~------------~P--gia 124 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI-----------------------LGMTDGGF------------LP--HPV 124 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEE-----------------------EEEEEECS------------SC--EEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEE-----------------------EEEEECCC------------CC--ceE
Confidence 577766665542 6999999988643 44444332 44 788
Q ss_pred EEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 117 WCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 117 ~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
+ +||+++++.+. .++.|.++|..+++........... .......+.....+++.++++.+..
T Consensus 125 ~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~------r~~~g~~P~~~~~spDGk~lyV~n~ 196 (426)
T 3c75_H 125 A--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP------RFLVGTYQWMNALTPDNKNLLFYQF 196 (426)
T ss_dssp E--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC------CCCBSCCGGGSEECTTSSEEEEEEC
T ss_pred E--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc------ccccCCCcceEEEcCCCCEEEEEec
Confidence 8 78999888876 4679999999988765543221000 0000112344555667777666655
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
...+.+.+.|..... .+..+..+. +....|++ +.+++. .||.+.+.+.. .++...... ..+.....
T Consensus 197 ~~~~~VsVID~~t~k---vv~~I~v~g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~~~~---~~~~v~~~ 264 (426)
T 3c75_H 197 SPAPAVGVVDLEGKT---FDRMLDVPD-----CYHIFPASPTVFYMNCRDGSLARVDFA-DGETKVTNT---EVFHTEDE 264 (426)
T ss_dssp SSSCEEEEEETTTTE---EEEEEECCS-----EEEEEEEETTEEEEEETTSSEEEEECC-TTCCEEEEC---CCCSCTTS
T ss_pred CCCCeEEEEECCCCe---EEEEEEcCC-----ceeeccCCCcEEEEEcCCCCEEEEECC-CCcEEEEee---eeeccCCC
Confidence 446678888887542 333321111 12223333 333443 67777777764 343332110 00111111
Q ss_pred Ce-EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-
Q 010933 265 VI-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 342 (497)
Q Consensus 265 ~i-~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~- 342 (497)
++ ..+.+.+++ ..++..+..+.+.+.|+........ ..+.... ...............++++|+++.+++..
T Consensus 265 p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v~--~~~~~~~---~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 265 LLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATFR--APIEALT---EAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp CBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEEC--CCEESSC---TTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred ceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEEe--eeeeecc---ccccccccccCCceeeEEcCCCCEEEEEec
Confidence 11 235678888 6777777889999999876532110 1111000 00000000012334578999998777652
Q ss_pred ----------cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEe-CCCcEEEEEcC
Q 010933 343 ----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHG 410 (497)
Q Consensus 343 ----------~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~i~vw~~~ 410 (497)
.+.|.++|+.+ .+.+.++...... ..+.|+|||+ +|++.. .++.|.++|+.
T Consensus 339 ~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred ccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 25799999997 8888888765543 5899999999 888888 59999999999
Q ss_pred CCCcceEEE
Q 010933 411 VGSAGGITV 419 (497)
Q Consensus 411 ~~~~~~~~~ 419 (497)
+++.+ ..+
T Consensus 402 t~kvv-~tI 409 (426)
T 3c75_H 402 TGEEL-RSV 409 (426)
T ss_dssp TCCEE-EEE
T ss_pred CCCEE-EEe
Confidence 98555 443
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.23 E-value=6.6e-09 Score=95.77 Aligned_cols=158 Identities=14% Similarity=0.139 Sum_probs=95.7
Q ss_pred CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC------CCeE
Q 010933 215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS------RGFV 288 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------dg~i 288 (497)
..+.++.++++|+++++..+ .|.+||.. .++........ .......+..++++|+| +++++... .+.|
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~-~g~~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTA-TGVLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETT-TCCEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECC-CCcEEEEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEE
Confidence 46888999999987776644 49999987 44433321110 01123468899999999 76655432 2455
Q ss_pred EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecC-CCC-cee--eeee
Q 010933 289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR-MDS-TPV--ATFK 362 (497)
Q Consensus 289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~-~~~-~~~--~~~~ 362 (497)
..+| +++.. ..... ....+.++|+|+|+.++.++ .+.|.+||+. ..+ ... ..+.
T Consensus 164 ~~~~--~g~~~----~~~~~--------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~ 223 (326)
T 2ghs_A 164 YHVA--KGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI 223 (326)
T ss_dssp EEEE--TTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred EEEe--CCcEE----EeeCC--------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE
Confidence 5555 34321 11111 13457899999999776654 3899999985 113 211 1121
Q ss_pred ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
...... . ....++++++|.++++...++.|.+|+..
T Consensus 224 ~~~~~~----------~--~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 224 DSTGIK----------G--GMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp ECTTSS----------S--EEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred ECCCCC----------C--CCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 110000 0 01479999999988877777899999973
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=6.9e-08 Score=89.96 Aligned_cols=172 Identities=13% Similarity=0.106 Sum_probs=97.6
Q ss_pred eEEEeCCCCCEEEEEc--------------------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE--eCCC
Q 010933 218 NSISNNSDCETFVSAD--------------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIY 275 (497)
Q Consensus 218 ~~~~~~~~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~ 275 (497)
+.+.|+|+++.+++++ +.+|.+||+. .++..+.+++. ........+.| +|++
T Consensus 191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~tI~vg-----~~g~~P~~i~f~~~Pdg 264 (462)
T 2ece_A 191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIHSLTLG-----EENRMALELRPLHDPTK 264 (462)
T ss_dssp CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEEEEESC-----TTEEEEEEEEECSSTTC
T ss_pred ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEeeEEecC-----CCCCccceeEeeECCCC
Confidence 4577899999888873 7899999999 46666665322 12233456666 9999
Q ss_pred CcEEEEEe------CCCeEEEEEccCCcccccccceecccccccCC-c----cccccccccccEEEEeeCCCEEEEEe--
Q 010933 276 CNLLAYSS------SRGFVRLVDMRQSALCDHSARILRDAAESHGS-K----SFFTEIIASISDIKFANDGQHLLSRD-- 342 (497)
Q Consensus 276 ~~~l~~~~------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~i~~~~~s~~g~~l~~~~-- 342 (497)
++++++. .+++|.+|....++.. ..+++......... . ..+.+-......+.+||||++|.++.
T Consensus 265 -~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg 341 (462)
T 2ece_A 265 -LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG 341 (462)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred -CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence 6665555 5678888777654321 11111110000000 0 00111124578899999999999885
Q ss_pred cCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933 343 YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 399 (497)
Q Consensus 343 ~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 399 (497)
.+.|.+||+...+ +.+..+...... .......+....-.-..+.++|||++|+++.
T Consensus 342 ~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 342 IGEVRQYDISNPFKPVLTGKVKLGGIF-HRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTEEEEEECSSTTSCEEEEEEECBTTT-TCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEEecCCCCcEEEEEEEeCCee-ccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 3999999986322 344444332100 0000000000000004799999999999888
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.10 E-value=5e-08 Score=92.69 Aligned_cols=236 Identities=6% Similarity=-0.077 Sum_probs=138.8
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC--eEEEE
Q 010933 215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLV 291 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~v~ 291 (497)
.....++|+++++++++. .++.|++||.. .+....+. .. ..... ++|+|++ ..|+++..++ .|.++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~-~g~~~~~~-------~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~ 199 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVD-DNKVTTVH-------PG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVY 199 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETT-TTEEEEEE-------ET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECC-CCEEEEee-------cc-CCCCc-eeEecCC-CcEEEEecCCCceEEEE
Confidence 467889999999977777 78999999998 45544432 11 22233 8999999 8888888765 78888
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeeccccccc
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPK 370 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~ 370 (497)
|...+... ..+.. .. ........+++++|++..|+.+. ++.|+.||... +. ...+......-.
T Consensus 200 d~~~~~~~----~~~g~-~~--------~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~-~~-~~~~~~~~~~g~- 263 (409)
T 3hrp_A 200 MKASGWAP----TRIGQ-LG--------STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT-QE-VTLIKQLELSGS- 263 (409)
T ss_dssp EGGGTTCE----EEEEE-CC--------TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT-CC-EEEEEECCCCSC-
T ss_pred EcCCCcee----EEeee-cc--------chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC-CC-EEEEecccccCC-
Confidence 88765321 11100 00 00124578899999544444454 38899999875 33 233311100000
Q ss_pred ccccCCCCCcccee-EEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccC---------------cceeeeEeec
Q 010933 371 LCDLYNNDSIFDKF-ECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---------------NENRKPILQA 433 (497)
Q Consensus 371 ~~~~~~~~~~~~~~-~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~---------------~~v~~~~~~~ 433 (497)
....-. .++|+|+ +.++++-..++.|+.|+.... ...+.++. .....+++.+
T Consensus 264 --------~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~ 332 (409)
T 3hrp_A 264 --------LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE 332 (409)
T ss_dssp --------CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred --------CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence 000002 7999995 666666677899999997643 23333332 3356778877
Q ss_pred CCCcccccccceeEee-ccCc-eecC-CCCCccccccc---------------CCCeEEEEEecCCCEEEEEeCC-ceEE
Q 010933 434 APRARRSSLSNLTRGL-YRQA-HENS-SSGHHELSYNL---------------SSKLLHLAWHPTTNLIACANGN-SLFF 494 (497)
Q Consensus 434 ~~~~~~~~~~~l~~~~-~d~~-~iw~-~~~~~~~~~~~---------------~~~i~~l~~~p~~~~la~~~~~-~~~i 494 (497)
++.+ .++-. ..+. ..|. .........+. -.....|+++|+|.++++-..+ .+..
T Consensus 333 --dG~l-----yvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~ 405 (409)
T 3hrp_A 333 --DGNF-----YIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405 (409)
T ss_dssp --TCCE-----EEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEE
T ss_pred --CCCE-----EEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEE
Confidence 4444 44433 3334 5553 33333222222 2457899999997666655533 3444
Q ss_pred E
Q 010933 495 H 495 (497)
Q Consensus 495 ~ 495 (497)
+
T Consensus 406 i 406 (409)
T 3hrp_A 406 Y 406 (409)
T ss_dssp E
T ss_pred E
Confidence 3
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.09 E-value=2e-08 Score=93.28 Aligned_cols=222 Identities=10% Similarity=0.018 Sum_probs=131.5
Q ss_pred CCCCCeeEEEeCCCCCEEEEE-c-----CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe--
Q 010933 212 AHDFNINSISNNSDCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-- 283 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-- 283 (497)
.|...+..+++.++++++++. . +..|.+||.. .++....+.++.. ...+...+..+++++++...+++-.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~-tg~~~~~~~~~~~-~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL-NNQLSRVIYLPPP-ITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT-TTEEEEEEECCTT-TSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC-CCeEEEEEECChh-hcccccccceEEEecCCCEEEEEcCcc
Confidence 456688999999999877765 4 6899999998 5555555443211 1223456689999986514445544
Q ss_pred -CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeee
Q 010933 284 -SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 361 (497)
Q Consensus 284 -~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~ 361 (497)
.++.|.+||+.+++.. +.+..|... . .....+.++|..+.+.+ ++.++.|..
T Consensus 142 ~~~~~i~v~d~~~g~~~----r~~~~~~~~-----------~-~~~~~~~~~g~~~~~~~~~g~~~~~~~---------- 195 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAA----RVLQGYPGI-----------A-PEDIDLVIDGVPVQIGQPDGTVIRPHL---------- 195 (343)
T ss_dssp GGGCEEEEEETTTCCEE----EECTTCTTT-----------S-CCSCCCEETTEECBEECTTSCEECCCC----------
T ss_pred CCCCeEEEEECCCCCEE----EEecCCCcc-----------c-ccccceeECCEEEEeccCCCceeceec----------
Confidence 5789999999877543 333221000 0 00133455666555543 355544321
Q ss_pred eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-cEEEEEcC---CCC----cc--eEEEeccCcceeeeEe
Q 010933 362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHG---VGS----AG--GITVEAGKNENRKPIL 431 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~i~vw~~~---~~~----~~--~~~~~~~~~~v~~~~~ 431 (497)
.. ..++|+||++.|+.+..++ .++.++.. .+. .. .....++......+++
T Consensus 196 ----~~----------------~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 196 ----GV----------------NGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ----CE----------------EEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ----cc----------------ceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 11 4799999999998887766 45444432 110 00 0122244445567788
Q ss_pred ecCCCcccccccceeEeeccCc-eecCC-CCCcccccc--cCCCeEEEEEecCCCEEEEEe
Q 010933 432 QAAPRARRSSLSNLTRGLYRQA-HENSS-SGHHELSYN--LSSKLLHLAWHPTTNLIACAN 488 (497)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~d~~-~iw~~-~~~~~~~~~--~~~~i~~l~~~p~~~~la~~~ 488 (497)
.+ ++.+ .++....+. .+|.. .+....... .......++|.+++.++++.+
T Consensus 256 d~--~G~l-----~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 256 DK--DHNI-----YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CT--TCCE-----EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CC--CCCE-----EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 76 4544 555555555 78855 332222222 235688999999998877766
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.05 E-value=2.7e-08 Score=92.19 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=58.9
Q ss_pred EEEEeeCCCEEEEE-e-c--------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCE-EE
Q 010933 328 DIKFANDGQHLLSR-D-Y--------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLH-FA 396 (497)
Q Consensus 328 ~~~~s~~g~~l~~~-~-~--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~ 396 (497)
.++++|+++.++.+ . . +.+.++|+.+ .+.+.++...... ..++|+|||++ ++
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~s~Dg~~l~v 330 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDNY 330 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCEEEE
Confidence 37899999888764 3 2 3566999997 8888888766543 58999999984 55
Q ss_pred EEe-CCCcEEEEEcCCCCcceEEEeccCc
Q 010933 397 TGS-YSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 397 s~~-~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
+.. .++.|.++|+.+++.+ .++.....
T Consensus 331 a~~~~~~~VsVID~~t~kvv-~~I~vg~~ 358 (368)
T 1mda_H 331 ANSAGTEVLDIYDAASDQDQ-SSVELDKG 358 (368)
T ss_dssp EEETTTTEEEEEESSSCEEE-EECCCCSC
T ss_pred EccCCCCeEEEEECCCCcEE-EEEECCCC
Confidence 666 5999999999998444 55554433
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.02 E-value=2.2e-08 Score=102.29 Aligned_cols=238 Identities=11% Similarity=0.021 Sum_probs=142.7
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933 211 HAHDFNINSISNNSDCETFVSA------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 284 (497)
Q Consensus 211 ~~h~~~v~~~~~~~~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 284 (497)
.+|...+..++|||||+.|+.+ +...|++||+. +++..... +.. .....++|+ |+ +.|+.++.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~-tg~~~~~~------~~~--~k~~~~~Ws-Dg-~~l~y~~~ 193 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE-SKQPLETP------LKD--VKFSGISWL-GN-EGFFYSSY 193 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT-TCSEEEEE------EEE--EESCCCEEE-TT-TEEEEEES
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC-CCCCCccc------cCC--ceeccEEEe-CC-CEEEEEEe
Confidence 3455678889999999999864 23579999999 44433320 111 113567899 99 88888877
Q ss_pred CC-------------eEEEEEccCCcccccccceecccccccCCcccccc-ccccccEEEEeeCCCEEEEE-e---c-Ce
Q 010933 285 RG-------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSR-D---Y-MN 345 (497)
Q Consensus 285 dg-------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~-~---~-~~ 345 (497)
+. .|++|++.++.... ..++.. .. |......+.|+|||++|+.. . . +.
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQEDD--RLVFGA-----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGGC--EEEESC-----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred cCcccccccccCCCcEEEEEECCCCcccc--eEEEec-----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 74 49999987754321 122322 11 22346788999999988764 2 2 58
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCC---CcEEEEEcCCCCc-ceEEEe
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYS---NLLRIFSHGVGSA-GGITVE 420 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~d---g~i~vw~~~~~~~-~~~~~~ 420 (497)
|+++|+.........+..+.... ... |+++|..|+ ....+ +.|..+++.++.. ....+.
T Consensus 261 i~~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 261 LYVKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp EEEEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred EEEEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe
Confidence 99999976333455555554432 233 667666555 44433 6799999987643 124566
Q ss_pred ccCcceeeeEeecCCCcccccccceeEeeccCc-ee--cCCC-CCcccc-cccCCCeEEEEEecCCCEEEEEeC-----C
Q 010933 421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HE--NSSS-GHHELS-YNLSSKLLHLAWHPTTNLIACANG-----N 490 (497)
Q Consensus 421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~i--w~~~-~~~~~~-~~~~~~i~~l~~~p~~~~la~~~~-----~ 490 (497)
.|...+. .+++ ++.. .+++...++. .+ |... ...... ......+..++++|+++.|+.... .
T Consensus 325 ~~~~~~~--~~s~--~g~~----lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~ 396 (693)
T 3iuj_A 325 PERQQVL--TVHS--GSGY----LFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPP 396 (693)
T ss_dssp CCCSSCE--EEEE--ETTE----EEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCC
T ss_pred cCCCCEE--EEEE--ECCE----EEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCC
Confidence 6665554 6666 3333 1344444544 44 4332 222211 233456778888999887766543 4
Q ss_pred ceEEEe
Q 010933 491 SLFFHY 496 (497)
Q Consensus 491 ~~~i~~ 496 (497)
.++.|+
T Consensus 397 ~l~~~d 402 (693)
T 3iuj_A 397 TLYRFE 402 (693)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 566664
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.97 E-value=3.8e-07 Score=85.98 Aligned_cols=231 Identities=10% Similarity=0.027 Sum_probs=132.5
Q ss_pred EEEeCCCCCEEEEE-c----------CCeEEEEeCccCceeeEEeecC-CCccCCCCCCeEEEEEeCCCCcEEEEEeC--
Q 010933 219 SISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSS-- 284 (497)
Q Consensus 219 ~~~~~~~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 284 (497)
.+.++|||+.++.+ . ++.|.++|.. ..+....+.+. +... ........+.++|+| ++++++..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~-t~~vv~~I~v~g~~r~-~~g~~P~~~~~spDG-k~lyV~n~~~ 198 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV-TFLPIADIELPDAPRF-LVGTYQWMNALTPDN-KNLLFYQFSP 198 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-TCCEEEEEEETTCCCC-CBSCCGGGSEECTTS-SEEEEEECSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC-CCcEEEEEECCCcccc-ccCCCcceEEEcCCC-CEEEEEecCC
Confidence 79999999988876 3 5789999998 45555554332 1111 012334678999999 88888764
Q ss_pred CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CE-EEEEecCeEEEEecCCCCceeeee-
Q 010933 285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QH-LLSRDYMNLKLWDIRMDSTPVATF- 361 (497)
Q Consensus 285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~-l~~~~~~~i~lwd~~~~~~~~~~~- 361 (497)
++.|.+.|+.+++.. ..+.. .. +....|++ +. ++...+|.+.+.++.. ++.....
T Consensus 199 ~~~VsVID~~t~kvv----~~I~v---------------~g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~ 256 (426)
T 3c75_H 199 APAVGVVDLEGKTFD----RMLDV---------------PD--CYHIFPASPTVFYMNCRDGSLARVDFAD-GETKVTNT 256 (426)
T ss_dssp SCEEEEEETTTTEEE----EEEEC---------------CS--EEEEEEEETTEEEEEETTSSEEEEECCT-TCCEEEEC
T ss_pred CCeEEEEECCCCeEE----EEEEc---------------CC--ceeeccCCCcEEEEEcCCCCEEEEECCC-CcEEEEee
Confidence 588999999998755 33332 11 13344544 22 2333457777777743 4444221
Q ss_pred ---eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-eEEEec----------cCccee
Q 010933 362 ---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEA----------GKNENR 427 (497)
Q Consensus 362 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~----------~~~~v~ 427 (497)
..... .++ ..+.+.+++..++..+..+.+.+.|....... ...+.. ......
T Consensus 257 ~~~~v~~~------------p~~--~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 257 EVFHTEDE------------LLI--NHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp CCCSCTTS------------CBC--SCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred eeeccCCC------------cee--eEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 11111 111 24678999988888888899999998754321 011110 011122
Q ss_pred eeEeecCCCcccccccceeEeecc--------Cc-eec----CCCCCcccccccCCCeEEEEEecCCC-EEEEEe--CCc
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYR--------QA-HEN----SSSGHHELSYNLSSKLLHLAWHPTTN-LIACAN--GNS 491 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d--------~~-~iw----~~~~~~~~~~~~~~~i~~l~~~p~~~-~la~~~--~~~ 491 (497)
.+++++ ++.. +.....+ +. .++ .+.+... .+........++|+|||+ .|+++. ++.
T Consensus 323 ~va~s~--dg~r-----lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~-~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 323 QTAYHR--QSDR-----IYLLVDQRDEWKHKAASRFVVVLNAETGERIN-KIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp CEEEEG--GGTE-----EEEEEEECCTTCTTSCEEEEEEEETTTCCEEE-EEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred eeEEcC--CCCE-----EEEEecccccccccCCCCEEEEEECCCCeEEE-EEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 356776 3332 2222211 12 344 2222222 222233567899999999 887777 567
Q ss_pred eEEEe
Q 010933 492 LFFHY 496 (497)
Q Consensus 492 ~~i~~ 496 (497)
+.|+.
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.94 E-value=1.1e-06 Score=82.60 Aligned_cols=153 Identities=10% Similarity=0.026 Sum_probs=82.6
Q ss_pred CEEEEE-cCCeEEEEeCccCceeeEEeecCCCc--cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010933 227 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN--MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 303 (497)
Q Consensus 227 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 303 (497)
..++.+ .++.|..+|..++...... ...... ...... .... + ..+++++.++.+..+|..+++....
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~~W~~-~~~~~~~~~~~~~~----~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~-- 213 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAVKWTV-NLDMPSLSLRGESA----PTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQ-- 213 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEE-ECCC-----CCCCC----CEEE--T-TEEEECCTTTEEEEEETTTCCEEEE--
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEE-eCCCCceeecCCCC----cEEE--C-CEEEEEcCCCEEEEEECCCCcEEEE--
Confidence 466666 8999999999844433332 111000 000111 1222 3 4677788899999999998875421
Q ss_pred ceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccc
Q 010933 304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 382 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (497)
... ..+.....+...........+ .+..++.++ ++.+..+|..+ ++.+........
T Consensus 214 --~~~--~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~t-G~~~w~~~~~~~---------------- 270 (376)
T 3q7m_A 214 --QRI--SQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRS-GQIMWKRELGSV---------------- 270 (376)
T ss_dssp --EEC--CC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTT-CCEEEEECCCCE----------------
T ss_pred --Eec--ccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCC-CcEEeeccCCCC----------------
Confidence 111 000000000000000011111 234555554 59999999986 777665542211
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 383 KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 383 ~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
..+.. ++..|+.++.++.|..+|..+++.+
T Consensus 271 -~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 271 -NDFIV--DGNRIYLVDQNDRVMALTIDGGVTL 300 (376)
T ss_dssp -EEEEE--ETTEEEEEETTCCEEEEETTTCCEE
T ss_pred -CCceE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 23333 4667888889999999999998554
No 226
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.92 E-value=4.1e-06 Score=74.50 Aligned_cols=174 Identities=11% Similarity=0.006 Sum_probs=103.0
Q ss_pred CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---CCeEE
Q 010933 215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVR 289 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~ 289 (497)
.....+++.+++..|..+ ..+.|.+++.+ +....... .........++++|++ ..|+.+.. .+.|.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVLF-------DTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIE 149 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSSEEEEEEETTT-TEEEEEECCSSSCEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEEEEE-------ECCCCCccEEEEeeCC-CEEEEEECCCCCcEEE
Confidence 356789999876555554 68899999987 33222221 1112456899999975 45554443 46888
Q ss_pred EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeecccc
Q 010933 290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHL 367 (497)
Q Consensus 290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~ 367 (497)
.+++.... . +.+.. ........++++|++..|..++. +.|..+|+.. ......+.....+
T Consensus 150 ~~~~dg~~-~----~~~~~------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~P 211 (267)
T 1npe_A 150 TSHMDGTN-R----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQYP 211 (267)
T ss_dssp EEETTSCC-C----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCSE
T ss_pred EEecCCCC-c----EEEEE------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCCc
Confidence 88876432 1 11111 00134688999998887776643 8999999863 3222222221111
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcceEEEeccC-cceeeeEeecC
Q 010933 368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAA 434 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~-~~v~~~~~~~~ 434 (497)
..++.. +..|+.+ ...+.|.++|..+++.+ ..+.... .....+++.|.
T Consensus 212 ----------------~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~-~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 212 ----------------FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp ----------------EEEEEE--TTEEEEEETTTTEEEEEETTTTEEE-EEECCSSCCCCCCEEEECS
T ss_pred ----------------eEEEEe--CCEEEEEECCCCeEEEEeCCCCCce-EEEccccccccceeeecCc
Confidence 356654 4455544 45689999999887544 4444332 23566777663
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.91 E-value=2.9e-07 Score=93.31 Aligned_cols=195 Identities=10% Similarity=0.103 Sum_probs=113.1
Q ss_pred eEEEeCCCCCEEEEE-cCC-------------------eEEEEeCccCceeeEEeecCCCc---cCCCCCCeEEEEEeCC
Q 010933 218 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSN---MDDLTEVITSAEFHPI 274 (497)
Q Consensus 218 ~~~~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 274 (497)
..+++.|++..++.+ .++ .|..+|.++++..... ...+.. ... .....-+....+
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~-~~~~~d~wd~~~-~~~p~l~~~~~d 323 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY-QETPGDNWDYTS-TQPMILADIKIA 323 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-ESSTTCCSCCCC-CSCCEEEEEEET
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE-ecCCCccccccc-CCCcEEEecccC
Confidence 357788888888877 553 5889999854443332 111100 000 112222333345
Q ss_pred CC--cEEEEEeCCCeEEEEEccCCcccccccce---ecccccccCC-------------ccc---cccccccccEEEEee
Q 010933 275 YC--NLLAYSSSRGFVRLVDMRQSALCDHSARI---LRDAAESHGS-------------KSF---FTEIIASISDIKFAN 333 (497)
Q Consensus 275 ~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~-------------~~~---~~~~~~~i~~~~~s~ 333 (497)
|. ..++.++.+|.++++|.++|+.+...... +...-+.... ... ..+. .....++++|
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~-~~w~~~a~dp 402 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA-HNWHPMSFNP 402 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS-SCSSCCEEET
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc-cCCCCceEcC
Confidence 52 46888899999999999999865321000 0000000000 000 0010 1124688999
Q ss_pred CCCEEEEEe--------------------------------------------cCeEEEEecCCCCceeeeeeecccccc
Q 010933 334 DGQHLLSRD--------------------------------------------YMNLKLWDIRMDSTPVATFKIHEHLRP 369 (497)
Q Consensus 334 ~g~~l~~~~--------------------------------------------~~~i~lwd~~~~~~~~~~~~~~~~~~~ 369 (497)
++.++++.. .+.|..||+.+ ++.+.++......
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~~-- 479 (677)
T 1kb0_A 403 QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVSPW-- 479 (677)
T ss_dssp TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESSSC--
T ss_pred CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCCCC--
Confidence 888877642 16799999987 8888877654321
Q ss_pred cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe-ccCcceeeeEeec
Q 010933 370 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNENRKPILQA 433 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~~ 433 (497)
....+..++..++.++.||.+++||..+++.+ ..+. ++......+.+..
T Consensus 480 --------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~ 529 (677)
T 1kb0_A 480 --------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMV 529 (677)
T ss_dssp --------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE
T ss_pred --------------cCcceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEe
Confidence 24556678888999999999999999999665 4554 3323333444433
No 228
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.89 E-value=2.2e-06 Score=87.12 Aligned_cols=195 Identities=12% Similarity=0.088 Sum_probs=114.5
Q ss_pred EEEeCCCCCEEEEE-cCCe-------------------EEEEeCccCceeeEEeecCCCccCC--CCCCeEEEEEeCCCC
Q 010933 219 SISNNSDCETFVSA-DDLR-------------------INLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIYC 276 (497)
Q Consensus 219 ~~~~~~~~~~l~~~-~d~~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 276 (497)
.+++.|++..++.+ .++. |..+|.++++..... ...+...-. ....+.......+|
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~-~~~~~d~wd~~~~~~~~l~d~~~~G- 316 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY-QTTPGDAWDYTATQHMILAELPIDG- 316 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE-ESSTTCCSCCCCCSCEEEEEEEETT-
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee-ecCCcccccccCCCCcEEEeeccCC-
Confidence 57888888888888 6653 999999955544332 111100000 11222222333355
Q ss_pred c---EEEEEeCCCeEEEEEccCCcccccccc---eeccccc----c-----------cCCc--cccccc--cccccEEEE
Q 010933 277 N---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----S-----------HGSK--SFFTEI--IASISDIKF 331 (497)
Q Consensus 277 ~---~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~~~----~-----------~~~~--~~~~~~--~~~i~~~~~ 331 (497)
. .++.++.+|.++++|.++|+.+..... .+..+.. . +... ....+. ......++|
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 4 788899999999999999986521000 0100000 0 0000 000000 012345889
Q ss_pred eeCCCEEEEEe----------------------------------------------cCeEEEEecCCCCceeeeeeecc
Q 010933 332 ANDGQHLLSRD----------------------------------------------YMNLKLWDIRMDSTPVATFKIHE 365 (497)
Q Consensus 332 s~~g~~l~~~~----------------------------------------------~~~i~lwd~~~~~~~~~~~~~~~ 365 (497)
+|+..++++.. +|.|+.||+.+ ++.+.+++.+.
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~ 475 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT 475 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence 99887777641 26799999987 88888877654
Q ss_pred cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc-CcceeeeEeec
Q 010933 366 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQA 433 (497)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~~~~~~~ 433 (497)
.. ..-.+...+.+++.|+.||.++.||.++++.+ ..++.. ......+.+..
T Consensus 476 ~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~ty~~ 527 (689)
T 1yiq_A 476 IF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEKL-WEQPAASGVMAAPVTYSV 527 (689)
T ss_dssp SC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE
T ss_pred Cc----------------cCccceECCCEEEEECCCCcEEEEECCCCccc-eeeeCCCCcccCceEEEE
Confidence 32 23456667889999999999999999999665 455433 22234455544
No 229
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.86 E-value=2.3e-05 Score=81.46 Aligned_cols=248 Identities=10% Similarity=0.033 Sum_probs=139.9
Q ss_pred CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933 214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 293 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~ 293 (497)
...|.++...++|.+.+...+ -|.+||.. .+..............-....|.++..+++| . |-.|+.++-|..|+.
T Consensus 262 ~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGTFN-DLNIYHEG-TDSFASYSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp CSBEEEEEECTTSCEEEEESS-CEEEEETT-TTEEEEECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEECG
T ss_pred CCeEEEEEEcCCCCEEEEeCC-hhheEcCC-CCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeCC
Confidence 346889998888887766554 58889977 4433332110000111234679999999987 4 566777777899987
Q ss_pred cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecc-ccccccc
Q 010933 294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE-HLRPKLC 372 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~ 372 (497)
.++... .+.. .... .. -....|.++...++|.+.+...++-|..|+..+ ++ ...+.... .....
T Consensus 338 ~~~~~~-----~~~~-~~~~---~~--l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~-- 402 (795)
T 4a2l_A 338 IRNRFK-----NIRN-IPYK---NS--LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-QR-FTSYTLQEDESARG-- 402 (795)
T ss_dssp GGGSSE-----EECC-CTTS---SS--CSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-CC-EEEECCC------C--
T ss_pred Ccccce-----EEcC-CCCC---CC--CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-Cc-EEEEecCCCCcccC--
Confidence 664321 1111 0000 00 012468899888888766654557899999864 33 33332111 00000
Q ss_pred ccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec-----cCcceeeeEeecCCCcccccccceeE
Q 010933 373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-----GKNENRKPILQAAPRARRSSLSNLTR 447 (497)
Q Consensus 373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~l~~ 447 (497)
. ....+.++...++++.|..|+.++-|.+||..+++. ..+.. ....|.++...+ ++. +-.
T Consensus 403 --l---~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--~~~~~~~~~l~~~~v~~i~~d~--~g~------lwi 467 (795)
T 4a2l_A 403 --I---GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--ENFNQRNSQLVNENVYAILPDG--EGN------LWL 467 (795)
T ss_dssp --C---SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--EEECTTTSCCSCSCEEEEEECS--SSC------EEE
T ss_pred --C---CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--EEeecCCCCcCCCeeEEEEECC--CCC------EEE
Confidence 0 001136788888888566678777899999887643 22221 234556655543 333 233
Q ss_pred eeccCceecCCCCCccccc--------ccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 448 GLYRQAHENSSSGHHELSY--------NLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 448 ~~~d~~~iw~~~~~~~~~~--------~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
|+..|...+.......... -....|.++...++|.+.+... ++++.|+
T Consensus 468 gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~ 523 (795)
T 4a2l_A 468 GTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFK 523 (795)
T ss_dssp EESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEE
T ss_pred EecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEe
Confidence 3344445552221111111 1235789999999998776655 8888875
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.84 E-value=9.2e-08 Score=88.65 Aligned_cols=254 Identities=9% Similarity=0.004 Sum_probs=138.4
Q ss_pred EEEEcCCCCEEEEee----------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccccc-Ccccccccc
Q 010933 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFDYLKS 105 (497)
Q Consensus 37 ~i~~sp~g~~lasg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 105 (497)
.++|+|||++++++. .++.|.+||..+++. +.++.-. .+++ +
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-----------------------v~~I~v~~~~~~--~-- 121 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-----------------------IADIELPDAPRF--S-- 121 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-----------------------EEEEEETTSCSC--C--
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-----------------------EEEEECCCcccc--c--
Confidence 799999999998886 368999999998754 3333211 0000 0
Q ss_pred cccccceeEEEEEecCCCCEEEEEeC--CccEEE--eecCchheeccccCCCCCccccccccccccCccccCCCCCcccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTN--DKTIKL--WKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 181 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~--d~~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (497)
.-.....+++ +|||++++.+.. +..+.+ +|..+ ...+. .. . | . ...+++.......
T Consensus 122 --~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~-v~--~--~-~-~~~p~g~~~~~~~------- 181 (368)
T 1mda_H 122 --VGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD--DQLTK-SA--S--C-F-HIHPGAAATHYLG------- 181 (368)
T ss_dssp --BSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE--EEEEE-CS--S--C-C-CCEEEETTEEECC-------
T ss_pred --cCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh--ceEEE-CC--C--c-e-EEccCCCeEEEEE-------
Confidence 0011345888 799999998874 467888 99877 22211 10 0 0 0 0011111111111
Q ss_pred cccccccCcceEEEeecCCcc--ceeee---eeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc-eeeEEeec
Q 010933 182 YHLEWTENMATKIANVGNSVH--ARCQK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDM 254 (497)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~ 254 (497)
..++.+...+.+.... .+... ..+.-...+. . .+++..++.. . +.+.+.|..... .....+.+
T Consensus 182 -----~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~ 251 (368)
T 1mda_H 182 -----SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDG 251 (368)
T ss_dssp -----CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCS
T ss_pred -----cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEe
Confidence 1233444444442000 01100 0001112232 3 5556666555 7 999999986322 22222111
Q ss_pred CCCccCCC---CCCeEEEEEeCCCCcEEEEEeC---------CCeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933 255 KPSNMDDL---TEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 322 (497)
Q Consensus 255 ~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~---------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (497)
.......+ ......++++|++ +.++++.. ++.+.++|+.+++.+ ..+..
T Consensus 252 ~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v-------------- 312 (368)
T 1mda_H 252 NESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN-------------- 312 (368)
T ss_dssp SCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE--------------
T ss_pred ccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC--------------
Confidence 10000000 1111226899999 66665432 235669999998765 33333
Q ss_pred cccccEEEEeeCCCE-EEEEe--cCeEEEEecCCCCceeeeeeecccc
Q 010933 323 IASISDIKFANDGQH-LLSRD--YMNLKLWDIRMDSTPVATFKIHEHL 367 (497)
Q Consensus 323 ~~~i~~~~~s~~g~~-l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~ 367 (497)
......++|+|||++ +++.. ++.|.++|+.+ .+.+.++.....+
T Consensus 313 g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P 359 (368)
T 1mda_H 313 GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred CCCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence 135789999999984 44444 59999999997 8999988876654
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.81 E-value=3.5e-07 Score=84.22 Aligned_cols=211 Identities=10% Similarity=0.032 Sum_probs=120.0
Q ss_pred CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010933 226 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 304 (497)
Q Consensus 226 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 304 (497)
+..+..+ .++.|..+|.. +...... ......+.++...+++ . +..++.++.|..+|.. ++.. .
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~----~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEK----W 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEE----E
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEe----E
Confidence 3456666 88999999987 4443332 1223345556677776 4 6668888999999988 6533 1
Q ss_pred eecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCcccee
Q 010933 305 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 384 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (497)
.+.. ....+.++.+.+++.+.+.. +.|..+| .+ ++.+..+......+ .
T Consensus 171 ~~~~-------------~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~~---------------~ 218 (330)
T 3hxj_A 171 RFKT-------------NDAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWTV---------------T 218 (330)
T ss_dssp EEEC-------------SSCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCCC---------------S
T ss_pred EEec-------------CCCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcce---------------e
Confidence 1111 01346677777778755544 8899999 44 66665554333221 4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC-CCc
Q 010933 385 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHH 462 (497)
Q Consensus 385 ~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~-~~~ 462 (497)
++...++|. |..++.++.|..++. +++.. ..+......+..+.+.. ++ .+..++.++. ..+... +..
T Consensus 219 ~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~-~~~~~~~~~~~~~~~~~--~g------~l~v~t~~ggl~~~d~~g~~~ 287 (330)
T 3hxj_A 219 RPAISEDGT-IYVTSLDGHLYAINP-DGTEK-WRFKTGKRIESSPVIGN--TD------TIYFGSYDGHLYAINPDGTEK 287 (330)
T ss_dssp CCEECTTSC-EEEEETTTEEEEECT-TSCEE-EEEECSSCCCSCCEECT--TS------CEEEECTTCEEEEECTTSCEE
T ss_pred ceEECCCCe-EEEEcCCCeEEEECC-CCCEe-EEeeCCCCccccceEcC--CC------eEEEecCCCCEEEECCCCcEE
Confidence 678888775 555677788888874 44333 34443333333344432 22 2566666655 555322 222
Q ss_pred ccccccCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933 463 ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 495 (497)
Q Consensus 463 ~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~ 495 (497)
.........+.++...++|.+.+...++.+++.
T Consensus 288 ~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 288 WNFETGSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp EEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred EEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 222222345566677777776554444445543
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.80 E-value=1.3e-09 Score=102.25 Aligned_cols=186 Identities=10% Similarity=0.059 Sum_probs=98.7
Q ss_pred CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCc
Q 010933 122 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 201 (497)
Q Consensus 122 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (497)
++..+++++.|+.|..||..+|+.+.. ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~------------------------------------------------~~--- 36 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT------------------------------------------------LK--- 36 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE------------------------------------------------EE---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE------------------------------------------------ec---
Confidence 567899999999999999998885432 11
Q ss_pred cceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC-CCeE-EEEEeCCCCcE
Q 010933 202 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EVIT-SAEFHPIYCNL 278 (497)
Q Consensus 202 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~i~-~~~~~~~~~~~ 278 (497)
. ..+.+..+..++..++++ .|+.|+.||.++++ ....+ ..+. ..+. +..+. .+ ..
T Consensus 37 ----------~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~-~~w~~-------~~~~~~~~~~sp~~~-~~-~~ 94 (369)
T 2hz6_A 37 ----------E--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE-GLTKL-------PFTIPELVQASPCRS-SD-GI 94 (369)
T ss_dssp ----------C--CCSCCCC-----CCEEECTTTCCEEEC-----C-CSEEC-------SCCHHHHHTTCSCC-------
T ss_pred ----------C--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc-eeeee-------eccCccccccCceEe-cC-CE
Confidence 1 122222334567778887 99999999997433 32221 1110 0000 00111 23 56
Q ss_pred EEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCce
Q 010933 279 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTP 357 (497)
Q Consensus 279 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~ 357 (497)
+++++.|+.|+.||.++|+... .+..+ . ...++|++..+++++ ++.|+.||.++ ++.
T Consensus 95 v~~g~~dg~v~a~D~~tG~~~w----~~~~~--------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~ 152 (369)
T 2hz6_A 95 LYMGKKQDIWYVIDLLTGEKQQ----TLSSA--------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-REL 152 (369)
T ss_dssp CCCCEEEEEEEEECCC-------------------------------------------EEEEEEEEEEECCCSSS-SSC
T ss_pred EEEEeCCCEEEEEECCCCcEEE----EecCC--------------C---cccccccCCEEEEEecCCEEEEEECCC-CCE
Confidence 7888889999999999997642 22220 0 133456777777764 59999999987 777
Q ss_pred eeeeeecccccccccccCCCCCccceeEEEEcCCC---CEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933 358 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---LHFATGSYSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 420 (497)
+..+..... ....++++. ..+++++.||.|+.||..+++.+ ....
T Consensus 153 ~W~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~ 200 (369)
T 2hz6_A 153 RWNATYFDY-----------------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL-WIQN 200 (369)
T ss_dssp CCEEEEEEE-----------------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE-EEEE
T ss_pred EEeEecccc-----------------cCccccCCccccceEEEECCCCEEEEEECCCCcEE-EEec
Confidence 766654321 123333332 46778899999999999998554 4443
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.78 E-value=4e-09 Score=98.96 Aligned_cols=189 Identities=10% Similarity=0.009 Sum_probs=96.6
Q ss_pred CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCC
Q 010933 43 TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 122 (497)
Q Consensus 43 ~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~ 122 (497)
++..+++++.||.|+.||..+++. +-.+.. . .+.+..+ ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-----------------------~W~~~~-~-------------~~~s~p~--~~~ 48 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-----------------------KWTLKE-D-------------PVLQVPT--HVE 48 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-----------------------EEEEEC-C-------------CSCCCC------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-----------------------EEEecC-C-------------Cceecce--EcC
Confidence 577899999999999999998864 212221 1 1222223 245
Q ss_pred CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCcc
Q 010933 123 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 202 (497)
Q Consensus 123 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (497)
+..+++++.|+.|+.||..+++...........
T Consensus 49 g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~----------------------------------------------- 81 (369)
T 2hz6_A 49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE----------------------------------------------- 81 (369)
T ss_dssp -CCEEECTTTCCEEEC-----CCSEECSCCHHH-----------------------------------------------
T ss_pred CCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-----------------------------------------------
Confidence 667777889999999999887743221100000
Q ss_pred ceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE
Q 010933 203 ARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 281 (497)
Q Consensus 203 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 281 (497)
.....++ +. .+..+++| .++.|+.||.++ ++..-. +..+. ...++|++ ..+++
T Consensus 82 --------~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~-------~~~~~----~~~~~p~~-~~v~~ 135 (369)
T 2hz6_A 82 --------LVQASPC----RS-SDGILYMGKKQDIWYVIDLLT-GEKQQT-------LSSAF----ADSLSPST-SLLYL 135 (369)
T ss_dssp --------HHTTCSC----C------CCCCEEEEEEEEECCC-----------------------------------EEE
T ss_pred --------ccccCce----Ee-cCCEEEEEeCCCEEEEEECCC-CcEEEE-------ecCCC----cccccccC-CEEEE
Confidence 0001111 11 23355666 899999999984 443322 22221 23455677 78999
Q ss_pred EeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC----CCEEEEEecCeEEEEecCCCCce
Q 010933 282 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----GQHLLSRDYMNLKLWDIRMDSTP 357 (497)
Q Consensus 282 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----g~~l~~~~~~~i~lwd~~~~~~~ 357 (497)
++.|+.|+.||.++++...+ +.. .......++++ +.+++.+.++.|+.||.++ ++.
T Consensus 136 ~~~dg~v~a~d~~tG~~~W~----~~~---------------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t-G~~ 195 (369)
T 2hz6_A 136 GRTEYTITMYDTKTRELRWN----ATY---------------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES-GDV 195 (369)
T ss_dssp EEEEEEEECCCSSSSSCCCE----EEE---------------EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTT-CCE
T ss_pred EecCCEEEEEECCCCCEEEe----Eec---------------ccccCccccCCccccceEEEECCCCEEEEEECCC-CcE
Confidence 99999999999999875522 111 00112223332 4444444569999999986 887
Q ss_pred eeeeee
Q 010933 358 VATFKI 363 (497)
Q Consensus 358 ~~~~~~ 363 (497)
+.++..
T Consensus 196 ~W~~~~ 201 (369)
T 2hz6_A 196 LWIQNY 201 (369)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 777663
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.71 E-value=4.6e-06 Score=76.53 Aligned_cols=157 Identities=11% Similarity=0.039 Sum_probs=93.4
Q ss_pred CeeEEEeCC-CCCEEEEE-c-----------------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCC
Q 010933 216 NINSISNNS-DCETFVSA-D-----------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 276 (497)
Q Consensus 216 ~v~~~~~~~-~~~~l~~~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 276 (497)
....+++.+ +|++.++- . ++.|..||.. .++..... ........++++|++
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~--------~~~~~p~gia~~~dg- 196 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-TKETTLLL--------KELHVPGGAEVSADS- 196 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT-TTEEEEEE--------EEESCCCEEEECTTS-
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC-CCEEEEec--------cCCccCcceEECCCC-
Confidence 467788898 88877764 3 3678888876 33322211 111234679999998
Q ss_pred cEEEEE-eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e----------cC
Q 010933 277 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D----------YM 344 (497)
Q Consensus 277 ~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~----------~~ 344 (497)
+.|+++ +..+.|.+|++.....- ....+.. ..+ ...++++++|++.++. . .+
T Consensus 197 ~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~-------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~ 260 (322)
T 2fp8_A 197 SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK-------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDP 260 (322)
T ss_dssp SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEE-------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcCC--ccceEEe-------------CCC-CCCeEECCCCCEEEEecCcccccccCCCcc
Confidence 755555 55789999998753210 0011111 012 5678999999877664 3 25
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
.|..+|.. ++.+..+....+.. ...++.+++ .+++++++...++.|.++++...
T Consensus 261 ~v~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 261 KGIKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEEEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 67777763 77777776543210 000135666 46666666667889999998643
No 235
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.71 E-value=0.00016 Score=75.14 Aligned_cols=245 Identities=10% Similarity=-0.027 Sum_probs=136.1
Q ss_pred CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933 214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 293 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~ 293 (497)
...|.++...++|.+.+...++-|..|+.. .... ..+...+..-.-....|.++..+++| . |-.|+.++-|..||.
T Consensus 309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~-~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~ 384 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPI-RNRF-KNIRNIPYKNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNP 384 (795)
T ss_dssp SSCEEEEEECTTSCEEEEESSSCEEEECGG-GGSS-EEECCCTTSSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECT
T ss_pred CCcEEEEEEeCCcCEEEEECCCCeEEeCCC-cccc-eEEcCCCCCCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcC
Confidence 457899999999987766577778888876 3322 22111110011134679999999887 4 556788877999998
Q ss_pred cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeeccccccccc
Q 010933 294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC 372 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 372 (497)
.+++.. .+......+. .. -....|.++...++|++|..|+. +-|..||..+ ++ ...+.......
T Consensus 385 ~~~~~~-----~~~~~~~~~~--~~--l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~~l---- 449 (795)
T 4a2l_A 385 ITQRFT-----SYTLQEDESA--RG--IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNSQL---- 449 (795)
T ss_dssp TTCCEE-----EECCC--------C--CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTSCC----
T ss_pred CCCcEE-----EEecCCCCcc--cC--CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCCCc----
Confidence 765432 1111000000 00 01246889988888984555554 7899999875 43 33332111000
Q ss_pred ccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec-------cCcceeeeEeecCCCcccccccce
Q 010933 373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-------GKNENRKPILQAAPRARRSSLSNL 445 (497)
Q Consensus 373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~l 445 (497)
....+.++...++|.+.+... +-|.+|+..++... .+.. ....|.++...+ ++.+
T Consensus 450 ------~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~--~g~l------ 511 (795)
T 4a2l_A 450 ------VNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFT--TIEKEKDGTPVVSKQITTLFRDS--HKRL------ 511 (795)
T ss_dssp ------SCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEE--ECCBCTTCCBCCCCCEEEEEECT--TCCE------
T ss_pred ------CCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEE--EccccccccccCCceEEEEEECC--CCCE------
Confidence 001135788888888666544 45888998765322 2211 124456655544 4433
Q ss_pred eEeeccCceecCCC-CCc------ccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 446 TRGLYRQAHENSSS-GHH------ELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 446 ~~~~~d~~~iw~~~-~~~------~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
-.|+..|...|... ... ....-....|.++...++|.+.+.. .++++.|+
T Consensus 512 Wigt~~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~d 568 (795)
T 4a2l_A 512 WIGGEEGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGT-REGFYCFN 568 (795)
T ss_dssp EEEESSCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSCEEEEE
T ss_pred EEEeCCceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCCceeEC
Confidence 33333444444211 111 0011234578999998999866554 45888875
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.64 E-value=1e-05 Score=75.95 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=83.4
Q ss_pred CEEEEE-cCCeEEEEeCccCceeeEEeecCCCc----cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc
Q 010933 227 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 301 (497)
Q Consensus 227 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 301 (497)
..++.+ .++.+..+|..++...... ...... +............. + ..+++++.++.+..+|.++++...
T Consensus 189 ~~v~~g~~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~p~~~--~-~~v~~~~~~g~l~~~d~~tG~~~w- 263 (376)
T 3q7m_A 189 GAAVVGGDNGRVSAVLMEQGQMIWQQ-RISQATGSTEIDRLSDVDTTPVVV--N-GVVFALAYNGNLTALDLRSGQIMW- 263 (376)
T ss_dssp TEEEECCTTTEEEEEETTTCCEEEEE-ECCC-----------CCCCCCEEE--T-TEEEEECTTSCEEEEETTTCCEEE-
T ss_pred CEEEEEcCCCEEEEEECCCCcEEEEE-ecccCCCCcccccccccCCCcEEE--C-CEEEEEecCcEEEEEECCCCcEEe-
Confidence 456667 8899999998844433332 111000 00000000011111 3 567788889999999999887442
Q ss_pred ccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCc
Q 010933 302 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380 (497)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (497)
.... .....+.. ++..++.+ .++.+..+|..+ ++.+.......... .
T Consensus 264 ---~~~~---------------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~-----------~ 311 (376)
T 3q7m_A 264 ---KREL---------------GSVNDFIV--DGNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL-----------L 311 (376)
T ss_dssp ---EECC---------------CCEEEEEE--ETTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSC-----------C
T ss_pred ---eccC---------------CCCCCceE--ECCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCc-----------c
Confidence 1111 12233333 34455555 458999999986 77766554211110 0
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 381 ~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
..... .+..|+.++.+|.|+++|..+++.+
T Consensus 312 ---~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 312 ---TSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp ---CCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred ---cCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 12222 2567889999999999999998554
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.62 E-value=5.1e-05 Score=67.31 Aligned_cols=220 Identities=12% Similarity=0.132 Sum_probs=128.8
Q ss_pred cceEEEEEcCCCCEEEEee-cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 33 DIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
..+..++++|+++.|..+. .++.|..++..+... ...+...- ..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----------------------~~~~~~~~------------~~ 80 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----------------------TTIIRQDL------------GS 80 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----------------------EEEECTTC------------CC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-----------------------EEEEECCC------------CC
Confidence 4567999999766665544 568999999876432 01111111 34
Q ss_pred eeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 112 INRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
...+++ ++++..++.+ ...+.|.+++++......+
T Consensus 81 p~~ia~--d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~------------------------------------------ 116 (267)
T 1npe_A 81 PEGIAL--DHLGRTIFWTDSQLDRIEVAKMDGTQRRVL------------------------------------------ 116 (267)
T ss_dssp EEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEE------------------------------------------
T ss_pred ccEEEE--EecCCeEEEEECCCCEEEEEEcCCCCEEEE------------------------------------------
Confidence 678888 5655555554 5667888888764321110
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--c--CCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
..........++++|++..|..+ . .+.|..++++ +.. ...+ ....-...
T Consensus 117 -------------------~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~-~~~~------~~~~~~~P 169 (267)
T 1npe_A 117 -------------------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTN-RRIL------AQDNLGLP 169 (267)
T ss_dssp -------------------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCC-CEEE------ECTTCSCE
T ss_pred -------------------EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCC-cEEE------EECCCCCC
Confidence 01112345789999965555544 3 4688888887 322 2221 11122457
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-C
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-M 344 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~ 344 (497)
..++++|++..++++-...+.|.++|+...... ..... ......++.. +..|..++ . +
T Consensus 170 ~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~----~~~~~--------------~~~P~gi~~d--~~~lyva~~~~~ 229 (267)
T 1npe_A 170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTDWKTN 229 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEETTTT
T ss_pred cEEEEcCCCCEEEEEECCCCEEEEEecCCCceE----EEecC--------------CCCceEEEEe--CCEEEEEECCCC
Confidence 899999987244445555789999998754321 11111 0123455543 55555553 3 8
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 393 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 393 (497)
.|..+|..+ ++.+..+.......+ ..+++.|++.
T Consensus 230 ~v~~~d~~~-g~~~~~i~~g~~~~p--------------~gi~~~~~~~ 263 (267)
T 1npe_A 230 SVIAMDLAI-SKEMDTFHPHKQTRL--------------YGITIALSQC 263 (267)
T ss_dssp EEEEEETTT-TEEEEEECCSSCCCC--------------CCEEEECSCC
T ss_pred eEEEEeCCC-CCceEEEcccccccc--------------ceeeecCccC
Confidence 999999976 777777754331100 4788888764
No 238
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.61 E-value=5.4e-05 Score=68.71 Aligned_cols=235 Identities=11% Similarity=0.118 Sum_probs=128.8
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
.....++|+++|+++++-..++.|..||.++... ..+. -. ...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~------------------------~~~~-~~------------~~p 74 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ------------------------IHAT-VE------------GKV 74 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE------------------------EEEE-CS------------SEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE------------------------EEEe-CC------------CCc
Confidence 4567899999999777766788999998765311 1111 11 457
Q ss_pred eEEEEEecCCCCEEEEEeCCc--cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 113 NRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
..+++ +++++++++..... .|..++..+++...+...
T Consensus 75 ~gia~--~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~--------------------------------------- 113 (306)
T 2p4o_A 75 SGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL--------------------------------------- 113 (306)
T ss_dssp EEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC---------------------------------------
T ss_pred eeEEE--cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeC---------------------------------------
Confidence 88998 67888655554332 355556555553321100
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeec--CCCccCCCCCCeE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLTEVIT 267 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i~ 267 (497)
........++..+++..+++- .++.|+.+|.......+..... ........-....
T Consensus 114 ---------------------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 114 ---------------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp ---------------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred ---------------------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 001112334444555445555 6888888887622111111000 0000111112345
Q ss_pred EEEEeCCCCcEE-EEEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933 268 SAEFHPIYCNLL-AYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 344 (497)
Q Consensus 268 ~~~~~~~~~~~l-~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~ 344 (497)
.+ +|++ ..| ++-+..+.|..+|+.. ++.. ....+.. ......++++++|+++++... +
T Consensus 173 gi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~--------------~~~P~gi~vd~dG~l~va~~~~~ 233 (306)
T 2p4o_A 173 GL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE--------------QTNIDDFAFDVEGNLYGATHIYN 233 (306)
T ss_dssp EE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE--------------SCCCSSEEEBTTCCEEEECBTTC
T ss_pred Cc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec--------------cCCCCCeEECCCCCEEEEeCCCC
Confidence 55 7787 555 4445578999999875 3211 0111111 024677999999987666543 8
Q ss_pred eEEEEecCCCCceee--eeeecccccccccccCCCCCccceeEEEEc---CCCCEEEEEeCCC
Q 010933 345 NLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVS---GDGLHFATGSYSN 402 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~s~~~dg 402 (497)
.|.++|.. ++... .+...... .++++|. |+++.|+..+..+
T Consensus 234 ~V~~~~~~--G~~~~~~~~~~~~~~---------------p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 234 SVVRIAPD--RSTTIIAQAEQGVIG---------------STAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CEEEECTT--CCEEEEECGGGTCTT---------------EEEEEECCSTTTTTEEEEEECTT
T ss_pred eEEEECCC--CCEEEEeecccccCC---------------ceEEEEecccCCCCEEEEECCCC
Confidence 99999874 54422 22211010 1689998 8887777666543
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.61 E-value=4.8e-05 Score=66.51 Aligned_cols=172 Identities=14% Similarity=0.043 Sum_probs=106.8
Q ss_pred eeeeeeccCCCCCeeEEEeCCCCCEEEEE-c--CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933 204 RCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 280 (497)
Q Consensus 204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 280 (497)
+.+.++..+.......+.|++++.++++. . ++.|.++|.. .++....+.+. .+ .....+++. +..+.+
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~-tg~v~~~i~l~-----~~-~fgeGi~~~--g~~lyv 80 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQ-TGKVENIHKMD-----DS-YFGEGLTLL--NEKLYQ 80 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETT-TCCEEEEEECC-----TT-CCEEEEEEE--TTEEEE
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECC-CCCEEEEEecC-----CC-cceEEEEEe--CCEEEE
Confidence 34455412222346799999987655554 3 6899999999 55566554322 11 122345555 414555
Q ss_pred EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceee
Q 010933 281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA 359 (497)
Q Consensus 281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~ 359 (497)
+.-.++.+.++|..+.+.+ ..+.. +.-....+++||+.++++.. +.|.++|..+ .+.+.
T Consensus 81 ~t~~~~~v~viD~~t~~v~----~~i~~---------------g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~ 140 (266)
T 2iwa_A 81 VVWLKNIGFIYDRRTLSNI----KNFTH---------------QMKDGWGLATDGKILYGSDGTSILYEIDPHT-FKLIK 140 (266)
T ss_dssp EETTCSEEEEEETTTTEEE----EEEEC---------------CSSSCCEEEECSSSEEEECSSSEEEEECTTT-CCEEE
T ss_pred EEecCCEEEEEECCCCcEE----EEEEC---------------CCCCeEEEEECCCEEEEECCCCeEEEEECCC-CcEEE
Confidence 5556899999999987655 33332 00122446678887777644 9999999986 77777
Q ss_pred eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
.+....... .+...+.+.|. +++..+....++.|.+-|..+++.+
T Consensus 141 ~I~Vg~~~~----------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~ 185 (266)
T 2iwa_A 141 KHNVKYNGH----------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL 185 (266)
T ss_dssp EEECEETTE----------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE
T ss_pred EEEECCCCc----------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE
Confidence 776443211 00001467888 7765555556899999999998543
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.61 E-value=7.3e-06 Score=76.50 Aligned_cols=156 Identities=11% Similarity=0.116 Sum_probs=101.4
Q ss_pred CCCCEEEE-E-cCCeEEEEeCccCc---eeeEEeecCCCccC-C-CCCCeEEEEEeCCCCcEEEEEeCC------CeEEE
Q 010933 224 SDCETFVS-A-DDLRINLWNLEISD---QCFNIVDMKPSNMD-D-LTEVITSAEFHPIYCNLLAYSSSR------GFVRL 290 (497)
Q Consensus 224 ~~~~~l~~-~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~l~~~~~d------g~i~v 290 (497)
++++.|+. | .++.|+++|+.+.. +..++++ +.++. . -....+.+...|+| +++++..+ |.|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie--~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIE--PEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEEC--HHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeec--hhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEE
Confidence 77887766 5 89999999986332 3444431 00110 0 11245778889998 55555444 78999
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--------------------cCeEEEEe
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--------------------YMNLKLWD 350 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--------------------~~~i~lwd 350 (497)
+|..+.+.+ ..++. ...+ ..--..+.|+|+++.+++++ ..+|.+||
T Consensus 169 lD~~T~~v~----~~~~~-~~~~---------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 169 LDHYSFEPL----GKWEI-DRGD---------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp ECTTTCCEE----EECCS-BCTT---------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred EECCCCeEE----EEEcc-CCCC---------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 999988765 44442 0000 12234688899999998875 48999999
Q ss_pred cCCCCceeeeeeecc-cccccccccCCCCCccceeEEEE--cCCCCEEEEEe------CCCcEEEEEcCCC
Q 010933 351 IRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSV--SGDGLHFATGS------YSNLLRIFSHGVG 412 (497)
Q Consensus 351 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~s~~------~dg~i~vw~~~~~ 412 (497)
+.+ ++.+.++.... +..+ ..+.| +|+++++++++ .+++|.+|..+.+
T Consensus 235 ~~~-~k~~~tI~vg~~g~~P--------------~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 235 LRK-RKRIHSLTLGEENRMA--------------LELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG 290 (462)
T ss_dssp TTT-TEEEEEEESCTTEEEE--------------EEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred CCC-CcEeeEEecCCCCCcc--------------ceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence 986 78788776541 1110 34545 99999988777 4668888776653
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.55 E-value=6.2e-06 Score=75.77 Aligned_cols=180 Identities=12% Similarity=0.092 Sum_probs=105.4
Q ss_pred CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc
Q 010933 215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 294 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 294 (497)
..+.++...+++..++...++.|..+|.. +...... ......+.++...+++ . +..++ +.|..+| .
T Consensus 137 ~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~ 202 (330)
T 3hxj_A 137 AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF--------KTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-P 202 (330)
T ss_dssp CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-T
T ss_pred ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE--------ecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-C
Confidence 34555666777775554488999999987 4433322 1223455667777777 5 44455 7899999 6
Q ss_pred CCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeeccccccccccc
Q 010933 295 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 374 (497)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
+++.. ..... ....+.++...++|.+.+...++.+..+|.. ++.+..+.......
T Consensus 203 ~g~~~----~~~~~-------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~~~~~~~~------ 257 (330)
T 3hxj_A 203 DGTEK----WNFYA-------------GYWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRFKTGKRIE------ 257 (330)
T ss_dssp TSCEE----EEECC-------------SSCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEEECSSCCC------
T ss_pred CCcEE----EEEcc-------------CCcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEeeCCCCcc------
Confidence 65432 11111 1145778888888876666556888888753 66666655433321
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc
Q 010933 375 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 453 (497)
Q Consensus 375 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~ 453 (497)
..+.+.+++ .|..++.+|.|..+|. +++.. ..+......+.++.... ++. +..|+.+|.
T Consensus 258 ---------~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~-~~~~~~~~~~~~~~~d~--~g~------l~~gt~~G~ 316 (330)
T 3hxj_A 258 ---------SSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK-WNFETGSWIIATPVIDE--NGT------IYFGTRNGK 316 (330)
T ss_dssp ---------SCCEECTTS-CEEEECTTCEEEEECT-TSCEE-EEEECSSCCCSCCEECT--TCC------EEEECTTSC
T ss_pred ---------ccceEcCCC-eEEEecCCCCEEEECC-CCcEE-EEEEcCCccccceEEcC--CCE------EEEEcCCCe
Confidence 245555555 5667888889999995 55333 34433333344444433 222 455555555
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.54 E-value=3.3e-05 Score=67.53 Aligned_cols=165 Identities=7% Similarity=-0.079 Sum_probs=96.6
Q ss_pred EEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC
Q 010933 219 SISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 296 (497)
Q Consensus 219 ~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 296 (497)
.+++. ++.| ++. .++.+.++|.. ..+.+..+... .+ . ...++++| ..++++..++.|.++|..+.
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~-t~~v~~~i~~g----~~-~----g~glt~Dg-~~l~vs~gs~~l~viD~~t~ 136 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRR-TLSNIKNFTHQ----MK-D----GWGLATDG-KILYGSDGTSILYEIDPHTF 136 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETT-TTEEEEEEECC----SS-S----CCEEEECS-SSEEEECSSSEEEEECTTTC
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECC-CCcEEEEEECC----CC-C----eEEEEECC-CEEEEECCCCeEEEEECCCC
Confidence 34444 4445 445 89999999998 55556554221 01 1 12355677 55556667899999999887
Q ss_pred cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccC
Q 010933 297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 375 (497)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (497)
+.. +.+..... . ......+.+.|. +|++.+... .+.|.+.|..+ ++.+..+........... .
T Consensus 137 ~v~----~~I~Vg~~-~-------~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~--~ 200 (266)
T 2iwa_A 137 KLI----KKHNVKYN-G-------HRVIRLNELEYI-NGEVWANIWQTDCIARISAKD-GTLLGWILLPNLRKKLID--E 200 (266)
T ss_dssp CEE----EEEECEET-T-------EECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT-CCEEEEEECHHHHHHHHH--T
T ss_pred cEE----EEEEECCC-C-------cccccceeEEEE-CCEEEEecCCCCeEEEEECCC-CcEEEEEECCCccccccc--c
Confidence 654 33322000 0 001235678887 775544443 38999999997 888888864311000000 0
Q ss_pred CCCCccceeEEEEcCCCCEE-EEEeCCCcEEEEEcCCC
Q 010933 376 NNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 376 ~~~~~~~~~~~~~s~~~~~l-~s~~~dg~i~vw~~~~~ 412 (497)
..........++|+|+++.| +++...+++.+.++...
T Consensus 201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 00000001589999998655 55667889999888754
No 243
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.53 E-value=0.00019 Score=65.03 Aligned_cols=162 Identities=11% Similarity=0.092 Sum_probs=89.0
Q ss_pred CeeEEEeCCCCCEEEEE-cCC--eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933 216 NINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 292 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 292 (497)
....+++.++|+++++. ... .|..++.. .++...+.... .......++..+.+ ..+++-..++.|.++|
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~~~~~~~------~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVETLLTLP------DAIFLNGITPLSDT-QYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEEEEEECT------TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEEEEEeCC------CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence 47789999999977665 332 46667765 34433332211 11223455555554 4455444588999999
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCce--eeeeeeccccc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTP--VATFKIHEHLR 368 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~--~~~~~~~~~~~ 368 (497)
...++. +.+....... . ......-...+.+ +|++++|+.++. +.|..|++...++. ...+.....+
T Consensus 145 ~~~~~~-----~v~~~~~~~~-~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P- 214 (306)
T 2p4o_A 145 VVQPSG-----SIWLEHPMLA-R-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI- 214 (306)
T ss_dssp TTTTEE-----EEEEECGGGS-C-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-
T ss_pred CCCCcE-----eEEEECCccc-c-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC-
Confidence 865421 0100000000 0 0000000123444 889988877643 89999998642221 1111111111
Q ss_pred ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
..++++++|+++++....+.|.+++..
T Consensus 215 ---------------~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 215 ---------------DDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp ---------------SSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred ---------------CCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 379999999887777778899999865
No 244
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.53 E-value=2e-05 Score=79.94 Aligned_cols=93 Identities=9% Similarity=0.016 Sum_probs=63.0
Q ss_pred CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeec
Q 010933 286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH 364 (497)
Q Consensus 286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~ 364 (497)
|.|..||+.+++... .+.. ..++....+..++.+++.++ ++.+++||+++ ++.+.++...
T Consensus 457 g~l~A~D~~tG~~~W----~~~~--------------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~ 517 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAW----SVEH--------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTG 517 (677)
T ss_dssp EEEEEEETTTTEEEE----EEEE--------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cEEEEEeCCCCcEEe----ecCC--------------CCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCC
Confidence 789999999887542 1111 12345556777888888885 49999999997 9999988766
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEE-EEeC----------------CCcEEEEEcCC
Q 010933 365 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY----------------SNLLRIFSHGV 411 (497)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~----------------dg~i~vw~~~~ 411 (497)
..... .-+.|..+|+.++ +.+. .+.+.+|.+..
T Consensus 518 ~~~~~--------------~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 518 TGVVA--------------APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp SCCCS--------------CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCccc--------------CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 54321 3477778887544 3222 36778888763
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.50 E-value=3.9e-05 Score=66.23 Aligned_cols=170 Identities=16% Similarity=0.143 Sum_probs=102.8
Q ss_pred eeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCC--eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933 204 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 280 (497)
Q Consensus 204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 280 (497)
+.++++..........+.|+ ++.++.+. .+| .|+.+|+. +++....+.+. .........+++..+.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~--------~~~FgeGit~~g~~ly~ 101 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIE-SGKTLQQIELG--------KRYFGEGISDWKDKIVG 101 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTT-TCCEEEEEECC--------TTCCEEEEEEETTEEEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECC-CCcEEEEEecC--------CccceeEEEEeCCEEEE
Confidence 35555522223334788998 66555554 554 99999999 55555554322 12222222233414444
Q ss_pred EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceee
Q 010933 281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 359 (497)
Q Consensus 281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~ 359 (497)
..-.++.+.+||..+.+.+ ..+.. .-....++++++.|+.++ .+.|.++|..+ .+.+.
T Consensus 102 ltw~~~~v~v~D~~t~~~~----~ti~~----------------~~eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~ 160 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNLRQV----RSFNY----------------DGEGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVR 160 (262)
T ss_dssp EESSSSEEEEEETTTCCEE----EEEEC----------------SSCCCCEEECSSCEEECCSSSEEEEECTTT-CSEEE
T ss_pred EEeeCCEEEEEECccCcEE----EEEEC----------------CCCceEEecCCCEEEEECCCCeEEEEcCCC-CeEEE
Confidence 4455899999999988765 44433 012234456787777764 38899999987 77777
Q ss_pred eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
++....... .+..+..+.|. +|+..+..-.++.|.+.|..+++.+
T Consensus 161 ~I~V~~~g~----------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 161 TITVTAHGE----------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp EEECEETTE----------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE
T ss_pred EEEeccCCc----------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE
Confidence 776543211 00111357776 7766655556889999999998443
No 246
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=0.00051 Score=71.22 Aligned_cols=248 Identities=11% Similarity=0.038 Sum_probs=132.9
Q ss_pred CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEee-------cCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 010933 214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVD-------MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 286 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 286 (497)
...|.++...++|.+.+....+-|.++|.. ......... .......-....|.++..+++| . |-.|+.++
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQ-QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETT-CC---------CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSS
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCC-CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCC
Confidence 346888988888876665565668888877 332221110 0000111235679999999987 4 56677777
Q ss_pred eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeeccc
Q 010933 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
-|..++...+... .+.. ........ .-....|.++...++|.+.+...++-|..||..+ + ....+.....
T Consensus 334 Gl~~~~~~~~~~~-----~~~~-~~~~~~~~--~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~ 403 (781)
T 3v9f_A 334 GINFISNAPPTFH-----TWSY-SPTQMNES--SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-R-VAIYNKENRE 403 (781)
T ss_dssp CEEEECSSCCSCE-----EEC-----CCCSS--CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-E-EEECC-----
T ss_pred eEEEeCCCCCcce-----eecc-CccccccC--CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-C-eEEEccCCCC
Confidence 7888888764321 1111 00000000 0012468888888888766554456788888753 2 2222211000
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe---ccCcceeeeEeecCCCccccccc
Q 010933 367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE---AGKNENRKPILQAAPRARRSSLS 443 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~ 443 (497)
. .... +.++...+++.+.+ |+.++-|..++..+++. ..+. .....|.++...+ ++.
T Consensus 404 ~--------~~~~---v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~--~g~----- 462 (781)
T 3v9f_A 404 L--------LSNS---VLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYEDK--NKK----- 462 (781)
T ss_dssp C--------CCSB---EEEEEECTTSCEEE-EETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEECT--TSE-----
T ss_pred C--------CCcc---eEEEEECCCCCEEE-EeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEECC--CCC-----
Confidence 0 0011 35788877777555 67667788998876532 2221 1234566655543 333
Q ss_pred ceeEeeccCceecCCCC-Cccccc------ccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 444 NLTRGLYRQAHENSSSG-HHELSY------NLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 444 ~l~~~~~d~~~iw~~~~-~~~~~~------~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
+-.|...|...+.... ...... .....|.++...++|.+.+....++++.|+
T Consensus 463 -lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 463 -IWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYT 521 (781)
T ss_dssp -EEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEEC
T ss_pred -EEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEe
Confidence 2333444444442211 111111 114678999999989877665557888775
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.49 E-value=0.00014 Score=73.51 Aligned_cols=178 Identities=13% Similarity=0.129 Sum_probs=104.9
Q ss_pred EEEeCCCCCEEEEE-cCC-------------------eEEEEeCccCceeeEEeecCCCccCCCC-------CCeEEEEE
Q 010933 219 SISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDDLT-------EVITSAEF 271 (497)
Q Consensus 219 ~~~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~ 271 (497)
.+++.+++..++.+ .++ .|.-+|.++++...+. . ...|. .+.....+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~-~-----~~~~~~wd~~~~~~~~~~d~ 307 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHY-Q-----VTPGDSWDFTATQQITLAEL 307 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE-E-----SSTTCCSCCCCCSCEEEEEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEe-e-----cCCCccccccCCCCcEEEEe
Confidence 46788888888887 665 3899999855444332 1 11122 23333333
Q ss_pred eCCCCc---EEEEEeCCCeEEEEEccCCcccccccc---eeccccc----cc--------CCc--ccccccc--ccccEE
Q 010933 272 HPIYCN---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----SH--------GSK--SFFTEII--ASISDI 329 (497)
Q Consensus 272 ~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~~~----~~--------~~~--~~~~~~~--~~i~~~ 329 (497)
..+| + .++.++.+|.++++|.++|+.+..... .+....+ .+ ... ....+.. .....+
T Consensus 308 ~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 308 NIDG-KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp EETT-EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred ccCC-cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 3455 4 688899999999999999986521000 0000000 00 000 0000000 012347
Q ss_pred EEeeCCCEEEEE-------------------------------------ecCeEEEEecCCCCceeeeeeeccccccccc
Q 010933 330 KFANDGQHLLSR-------------------------------------DYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 372 (497)
Q Consensus 330 ~~s~~g~~l~~~-------------------------------------~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 372 (497)
+++|+..+++.. .+|.|..||+.+ ++.+.+.......
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~----- 460 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW----- 460 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC-----
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC-----
Confidence 788876665541 127799999987 8888777654432
Q ss_pred ccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933 373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 421 (497)
Q Consensus 373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 421 (497)
....+...+.+++.++.||.++.||.++++.+ ..++.
T Consensus 461 -----------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l-~~~~~ 497 (668)
T 1kv9_A 461 -----------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL-WQFEA 497 (668)
T ss_dssp -----------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEEC
T ss_pred -----------cCceeEeCCCEEEEECCcccchhhhhhcChhh-eEecC
Confidence 23445557788999999999999999998655 44443
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.44 E-value=8.2e-06 Score=78.95 Aligned_cols=164 Identities=8% Similarity=0.016 Sum_probs=92.5
Q ss_pred CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC---------------eEEEEEccCCcc
Q 010933 234 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---------------FVRLVDMRQSAL 298 (497)
Q Consensus 234 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---------------~i~v~d~~~~~~ 298 (497)
++.+.++|..+ .+....+. ..+ ....++++|+| +++++.+.+. .|.+.|......
T Consensus 174 ~~~vtvID~~t-~~v~~qI~-----Vgg---~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 174 VNVFTAVDADK-WEVAWQVL-----VSG---NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp EEEEEEEETTT-TEEEEEEE-----ESS---CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred CceEEEEECCC-CeEEEEEE-----eCC---CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 45788888884 44443321 111 23567799999 7777777542 355555433211
Q ss_pred c--------ccccceecccccccCC-ccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCc-----------
Q 010933 299 C--------DHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST----------- 356 (497)
Q Consensus 299 ~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~----------- 356 (497)
. ...+.++......... ...+. -.....++.++|||+++++++. ..|.++|+.+ .+
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRS 321 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGG
T ss_pred eccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCccc
Confidence 0 0111222221000000 00011 1135678999999999988753 9999999984 21
Q ss_pred -eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------CcceEEEeccCcc
Q 010933 357 -PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SAGGITVEAGKNE 425 (497)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~---------~~~~~~~~~~~~~ 425 (497)
.+.......++ +.++|+|+|....+.-.|+.|.+||++.. ..+...+..|-.+
T Consensus 322 ~v~~~v~vG~gP----------------~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 322 AVVAEPELGLGP----------------LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp GEEECCBCCSCE----------------EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred ceEEEcCCCCCc----------------ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 22233322222 58999999944445666999999999762 2344566655443
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.44 E-value=1.3e-05 Score=77.57 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=96.1
Q ss_pred CCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE-e-CCCCcEEEEEe----------------
Q 010933 224 SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-H-PIYCNLLAYSS---------------- 283 (497)
Q Consensus 224 ~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~~l~~~~---------------- 283 (497)
+||+++... .+..|.+.|+. ..++.+++.++ ....+..+++ + |++ .++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip------~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCD-VMKCDAILEIP------NAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETT-TTEEEEEEECS------SCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCG
T ss_pred cCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCC------CCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccc
Confidence 488888776 68889999999 66666654322 2235788887 5 898 7777774
Q ss_pred --CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecC-----------------
Q 010933 284 --SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM----------------- 344 (497)
Q Consensus 284 --~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~----------------- 344 (497)
.++.+.+.|..+.+.. ..+.. .+....++++|+|+++++.+..
T Consensus 171 ~~~~~~vtvID~~t~~v~----~qI~V--------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~ 232 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVA----WQVLV--------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH 232 (595)
T ss_dssp GGEEEEEEEEETTTTEEE----EEEEE--------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred cccCceEEEEECCCCeEE----EEEEe--------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence 2457899999876544 22221 0234567788999888876531
Q ss_pred ----------------------eEEEEecCCC-Cce-eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-
Q 010933 345 ----------------------NLKLWDIRMD-STP-VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS- 399 (497)
Q Consensus 345 ----------------------~i~lwd~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~- 399 (497)
.|.+.|.++. ++. +..+.....+ .++.++|||+++++++
T Consensus 233 v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~P----------------hGv~~sPDGk~v~V~~~ 296 (595)
T 1fwx_A 233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNP----------------HGCNMAPDKKHLCVAGK 296 (595)
T ss_dssp EEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSC----------------CCEEECTTSSEEEEECT
T ss_pred EEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCc----------------eEEEEcCCCCEEEEeCC
Confidence 2445554420 111 3333332222 4799999999887666
Q ss_pred CCCcEEEEEcCCC
Q 010933 400 YSNLLRIFSHGVG 412 (497)
Q Consensus 400 ~dg~i~vw~~~~~ 412 (497)
.+.+|.++|+.+.
T Consensus 297 ~s~~VsVid~~~~ 309 (595)
T 1fwx_A 297 LSPTVTVLDVTRF 309 (595)
T ss_dssp TSSBEEEEEGGGH
T ss_pred CCCeEEEEECccc
Confidence 5889999999864
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.43 E-value=6.5e-05 Score=64.90 Aligned_cols=187 Identities=13% Similarity=0.014 Sum_probs=114.5
Q ss_pred eeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE
Q 010933 204 RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 282 (497)
Q Consensus 204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 282 (497)
+.++++..........+.|+. +.++.+. .+|.|+.+|++ +++....+ +.+. .--..+++. +..+.+..
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~-Tgkv~~~~-l~~~------~FgeGit~~--g~~Ly~lt 112 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLE-SAQPVWME-RLGN------IFAEGLASD--GERLYQLT 112 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSS-CSSCSEEE-ECTT------CCEEEEEEC--SSCEEEEE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECC-CCcEEeEE-CCCC------cceeEEEEe--CCEEEEEE
Confidence 344555223334457888873 4455555 88889999999 45555443 2211 111234444 42555555
Q ss_pred eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeee
Q 010933 283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 361 (497)
Q Consensus 283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~ 361 (497)
-.++.+.+||..+.+.+ ..+.. ...-.. +.++++.|+.++ .+.|.++|..+ .+.+.++
T Consensus 113 w~~~~v~V~D~~Tl~~~----~ti~~--------------~~eGwG--Lt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I 171 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRE----RTTRY--------------SGEGWG--LCYWNGKLVRSDGGTMLTFHEPDG-FALVGAV 171 (268)
T ss_dssp SSSCEEEEEETTTTEEE----EEEEC--------------SSCCCC--EEEETTEEEEECSSSEEEEECTTT-CCEEEEE
T ss_pred ccCCEEEEEECCcCcEE----EEEeC--------------CCceeE--EecCCCEEEEECCCCEEEEEcCCC-CeEEEEE
Confidence 66899999999988765 34433 011133 346788877775 49999999987 7878777
Q ss_pred eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc-------------Ccceee
Q 010933 362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-------------KNENRK 428 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-------------~~~v~~ 428 (497)
....... .+..++.+.|. +|+..+..-.++.|.+-|..+++.+ ..+... .+-.+.
T Consensus 172 ~V~~~g~----------~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~~~~vlNG 239 (268)
T 3nok_A 172 QVKLRGQ----------PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDASALTRAVAGQVTNPEAVLNG 239 (268)
T ss_dssp ECEETTE----------ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCCTTCCEEE
T ss_pred EeCCCCc----------ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECCCCcccccccccCcCCceEE
Confidence 6544321 11112467777 7765555556889999999998544 444322 134578
Q ss_pred eEeecC
Q 010933 429 PILQAA 434 (497)
Q Consensus 429 ~~~~~~ 434 (497)
+++.+.
T Consensus 240 IA~dp~ 245 (268)
T 3nok_A 240 IAVEPG 245 (268)
T ss_dssp EEECTT
T ss_pred EEEcCC
Confidence 888874
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=0.00038 Score=59.56 Aligned_cols=170 Identities=14% Similarity=0.074 Sum_probs=103.4
Q ss_pred eeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC--CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933 204 RCQKVYPHAHDFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 280 (497)
Q Consensus 204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 280 (497)
+.+..+..........+.|++ +.++.+. .+ ..|+.+|+. +++....+.+. .+. --..++.. +..+..
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~-----~~~-fgeGi~~~--~~~ly~ 79 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLE-TGRILQRAEVP-----PPY-FGAGIVAW--RDRLIQ 79 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETT-TCCEEEEEECC-----TTC-CEEEEEEE--TTEEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECC-CCCEEEEEeCC-----CCc-ceeEEEEe--CCEEEE
Confidence 455555233344567899986 5555554 43 599999999 55555554322 111 11234444 315555
Q ss_pred EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceee
Q 010933 281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 359 (497)
Q Consensus 281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~ 359 (497)
..-.++.+.+||..+.+.+ ..+.. .. ....+.++++.|+.++ .+.|.++|..+ .+.+.
T Consensus 80 ltw~~~~v~v~D~~tl~~~----~ti~~--------------~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~ 138 (243)
T 3mbr_X 80 LTWRNHEGFVYDLATLTPR----ARFRY--------------PG--EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVG 138 (243)
T ss_dssp EESSSSEEEEEETTTTEEE----EEEEC--------------SS--CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEE
T ss_pred EEeeCCEEEEEECCcCcEE----EEEeC--------------CC--CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEE
Confidence 5566899999999988765 44433 01 2233446777776664 48999999987 77777
Q ss_pred eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
++....... .+..++.+.|. +|+..+..-.+..|.+.|..+++.+
T Consensus 139 ~I~V~~~g~----------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 139 SIKVTAGGR----------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV 183 (243)
T ss_dssp EEECEETTE----------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE
T ss_pred EEEEccCCc----------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE
Confidence 776543321 11112456665 6665555556889999999998443
No 252
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.40 E-value=0.0008 Score=58.42 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=99.9
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce--eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 010933 215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 291 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~ 291 (497)
...-.+++.+++.++++. .++.+.++++..... .......+.. ..........++|+|.+ +.|+++.......+|
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~-~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~ 147 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQ-ESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVY 147 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCS-SCCCSSCCEEEEEETTT-TEEEEEEESSSEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccc-cccccCCcceEEEeCCC-CEEEEEECcCCceEE
Confidence 346678888888877777 888999998874443 2222221100 12345567999999998 667767665555666
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-Eec-CeEEEEecCCCCceeeeeeecccccc
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY-MNLKLWDIRMDSTPVATFKIHEHLRP 369 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~ 369 (497)
.++ +..-......... ..-. -......+.+++++|....+.. ++. ..+..+|.+ ++.+..+.-..+.-.
T Consensus 148 ~~~-g~~~~~~l~i~~~-~~~~-----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~ 218 (255)
T 3qqz_A 148 KVN-GLLSSNELHISKD-KALQ-----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRG 218 (255)
T ss_dssp EEE-STTCSSCCEEEEC-HHHH-----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGG
T ss_pred EEc-ccccCCceeeecc-hhhc-----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCC
Confidence 554 2110001122111 0000 0001235789999997655544 433 889999976 566665543322100
Q ss_pred cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 370 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
+ ...+-.--.++|.++|+ |+..++-+.+++|.-.
T Consensus 219 ----l--~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 219 ----L--SHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp ----C--SSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred ----c--ccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 0 00000114899999998 5555787777777643
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.40 E-value=2.3e-05 Score=67.74 Aligned_cols=146 Identities=10% Similarity=0.072 Sum_probs=85.1
Q ss_pred CCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010933 226 CETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 303 (497)
Q Consensus 226 ~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 303 (497)
++.|.. . .++.+.+||.. ..+.+..+... + .+ ..+++++ ..|+.+..++.|.++|..+.+..
T Consensus 96 g~~ly~ltw~~~~v~v~D~~-t~~~~~ti~~~-----~-eG----~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~---- 159 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIR-NLRQVRSFNYD-----G-EG----WGLTHND-QYLIMSDGTPVLRFLDPESLTPV---- 159 (262)
T ss_dssp TTEEEEEESSSSEEEEEETT-TCCEEEEEECS-----S-CC----CCEEECS-SCEEECCSSSEEEEECTTTCSEE----
T ss_pred CCEEEEEEeeCCEEEEEECc-cCcEEEEEECC-----C-Cc----eEEecCC-CEEEEECCCCeEEEEcCCCCeEE----
Confidence 444544 4 89999999998 45555554322 1 11 2334566 55665556789999999987654
Q ss_pred ceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccc
Q 010933 304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFD 382 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (497)
..+..... . .....++.+.|. +|++.+..- .+.|.+.|.++ ++.+..+....-.-... .......+
T Consensus 160 ~~I~V~~~-g-------~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t-G~V~~~Id~~~L~~~~~-~~~~~~~v-- 226 (262)
T 3nol_A 160 RTITVTAH-G-------EELPELNELEWV-DGEIFANVWQTNKIVRIDPET-GKVTGIIDLNGILAEAG-PLPSPIDV-- 226 (262)
T ss_dssp EEEECEET-T-------EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT-CBEEEEEECTTGGGGSC-SCCSSCCC--
T ss_pred EEEEeccC-C-------ccccccceeEEE-CCEEEEEEccCCeEEEEECCC-CcEEEEEECCcCccccc-cccCcCCc--
Confidence 22222000 0 001234567776 776554443 48999999987 88888886542110000 00000111
Q ss_pred eeEEEEcCCCCEEEEEeC
Q 010933 383 KFECSVSGDGLHFATGSY 400 (497)
Q Consensus 383 ~~~~~~s~~~~~l~s~~~ 400 (497)
.+.++|+|+++.|+..+.
T Consensus 227 lNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 227 LNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred eEEEEEcCCCCEEEEECC
Confidence 268999999888777765
No 254
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.40 E-value=4.4e-05 Score=77.54 Aligned_cols=79 Identities=8% Similarity=0.002 Sum_probs=53.8
Q ss_pred CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeee
Q 010933 285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI 363 (497)
Q Consensus 285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~ 363 (497)
+|.|+.||+.+++... .+.. ..+.....+...+.+++.++ |+.++.||.++ ++.+.+++.
T Consensus 454 ~g~l~A~D~~tG~~~W----~~~~--------------~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t-G~~lw~~~~ 514 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAW----EVPY--------------VTIFNGGTLSTAGNLVFEGSADGRVIAYAADT-GEKLWEQPA 514 (689)
T ss_dssp EEEEEEEETTTTEEEE----EEEE--------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred ceeEEEEECCCCCeEe----EccC--------------CCCccCccceECCCEEEEECCCCcEEEEECCC-CccceeeeC
Confidence 3778999999887542 1111 12233446667788888885 59999999997 999998876
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEE
Q 010933 364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA 396 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 396 (497)
...... .-+.|..+|+..+
T Consensus 515 ~~~~~~--------------~p~ty~~~G~qyv 533 (689)
T 1yiq_A 515 ASGVMA--------------APVTYSVDGEQYV 533 (689)
T ss_dssp SSCCCS--------------CCEEEEETTEEEE
T ss_pred CCCccc--------------CceEEEECCEEEE
Confidence 654321 2477888887443
No 255
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.38 E-value=0.0015 Score=60.33 Aligned_cols=173 Identities=9% Similarity=-0.003 Sum_probs=99.5
Q ss_pred CeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-CeEEEEE
Q 010933 216 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD 292 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~v~d 292 (497)
....+++.+.+..|.. - ..+.|.+.+.+ +.....+ ....-.....++++|.+..++.+-... +.|..++
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 3467888875555544 4 67899999987 3322222 122234568999999762444444444 7888888
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccccccc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK 370 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~ 370 (497)
+...... ..... .....+.++++|++..|..++. +.|..+|+. +.....+.......
T Consensus 189 ~dG~~~~----~~~~~-------------~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~-- 247 (349)
T 3v64_C 189 MDGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH-- 247 (349)
T ss_dssp TTSCSCE----ESCCS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSS--
T ss_pred CCCCCcE----EEEEC-------------CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCCC--
Confidence 7653211 11111 0134688999998877777643 889999986 33222221111100
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEe
Q 010933 371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 431 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 431 (497)
-..+++. ++..+++-...+.|..++..+++.. ..+.........+++
T Consensus 248 ------------P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 248 ------------PFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT 294 (349)
T ss_dssp ------------EEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred ------------ceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc-EEeccCCCCCceEEE
Confidence 0467773 4555556666788999987676554 344333333334444
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.36 E-value=7e-05 Score=64.68 Aligned_cols=198 Identities=9% Similarity=0.014 Sum_probs=115.5
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.-...+.|. ++.++.+.+.+|.|+++|+.+++..... .
T Consensus 55 ~ftqGL~~~---~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-------------------------------------- 92 (268)
T 3nok_A 55 AFTQGLVFH---QGHFFESTGHQGTLRQLSLESAQPVWME-R-------------------------------------- 92 (268)
T ss_dssp CCEEEEEEE---TTEEEEEETTTTEEEECCSSCSSCSEEE-E--------------------------------------
T ss_pred cccceEEEE---CCEEEEEcCCCCEEEEEECCCCcEEeEE-C--------------------------------------
Confidence 445788883 4567777788899999999998855422 1
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
... ..--.+++.. +++.+.. .++.+.+||.. ..+.+..+... +. + ..
T Consensus 93 ---------------------~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~-Tl~~~~ti~~~-----~e-G--wG 140 (268)
T 3nok_A 93 ---------------------LGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGM-PPQRERTTRYS-----GE-G--WG 140 (268)
T ss_dssp ---------------------CTT-CCEEEEEECS-SCEEEEESSSCEEEEEETT-TTEEEEEEECS-----SC-C--CC
T ss_pred ---------------------CCC-cceeEEEEeC-CEEEEEEccCCEEEEEECC-cCcEEEEEeCC-----Cc-e--eE
Confidence 110 0111234332 2344445 89999999998 55666654322 11 1 23
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++ +++ ..|+.+..++.|.++|..+.+.. +.+.... ... ....++.+.|. +|++.+..- .+.|.
T Consensus 141 Lt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~----~~I~V~~-~g~-------~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 141 LC--YWN-GKLVRSDGGTMLTFHEPDGFALV----GAVQVKL-RGQ-------PVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EE--EET-TEEEEECSSSEEEEECTTTCCEE----EEEECEE-TTE-------ECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred Ee--cCC-CEEEEECCCCEEEEEcCCCCeEE----EEEEeCC-CCc-------ccccccccEEe-CCEEEEEECCCCeEE
Confidence 33 556 66776667999999999987655 2222200 000 01235667776 776554443 38999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 400 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 400 (497)
+.|.++ ++.+..+....-.............+ .+.++++|+++.|+..+.
T Consensus 205 vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~v--lNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPAT-GTVVGVIDASALTRAVAGQVTNPEAV--LNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTT-CBEEEEEECHHHHHHHTTTCCCTTCC--EEEEEECTTTCCEEEEET
T ss_pred EEeCCC-CcEEEEEECCCCcccccccccCcCCc--eEEEEEcCCCCEEEEeCC
Confidence 999987 88888886542100000000001111 268999998766665554
No 257
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.36 E-value=0.0008 Score=63.09 Aligned_cols=171 Identities=9% Similarity=0.016 Sum_probs=98.6
Q ss_pred eeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CC-CeEEEEE
Q 010933 217 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-GFVRLVD 292 (497)
Q Consensus 217 v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d-g~i~v~d 292 (497)
...+++.+.+..|.. - ..+.|.+.+++ +.....+ ....-.....++++|.+ ..|+.+. .. +.|..++
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~P~giavdp~~-g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPME-GTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTT-SCSCEEE-------ECSSCSCEEEEEEETTT-TEEEEEECSSSCEEEEEE
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCceEEe-------ecCCCCCCcEEEEEcCC-CeEEEeccCCCCEEEEEe
Confidence 456788875555544 4 67888888877 3322222 22223456899999976 4555444 44 7888888
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccccccc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK 370 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~ 370 (497)
+...... ..... .....+.++++|++..|..++. +.|..+|+. +.....+.......
T Consensus 232 ~dG~~~~----~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~-- 290 (386)
T 3v65_B 232 MDGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH-- 290 (386)
T ss_dssp TTSCSCE----EEECS-------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCSS--
T ss_pred CCCCCcE----EEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCCC--
Confidence 7653211 11111 0134688999988877777643 889999986 33222222111100
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEe
Q 010933 371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 431 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 431 (497)
-..+++ ..+.++++-...+.|..++..+++.. ..+.........+++
T Consensus 291 ------------P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 291 ------------PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT 337 (386)
T ss_dssp ------------EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred ------------ceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce-EEEccCCCCCceEEE
Confidence 046777 34555566667888999997677554 444433333344444
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.004 Score=64.49 Aligned_cols=239 Identities=9% Similarity=0.039 Sum_probs=131.1
Q ss_pred CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCC---ccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933 214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 290 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 290 (497)
...|.++...++|.+-+...++-|..++.. .... ..+...+. ........|.++..+++| . |..|+.++-|..
T Consensus 312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWIGTWGGGINFISNA-PPTF-HTWSYSPTQMNESSLSNKVVSSVCDDGQG-K-LWIGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSCCEEEEEBSSCEEEECSS-CCSC-EEEC----CCCSSCCSSSCEEEEEECTTS-C-EEEEEBSSCEEE
T ss_pred CCeEEEEEEeCCCCEEEEecCCeEEEeCCC-CCcc-eeeccCccccccCCCCCcceEEEEEcCCC-C-EEEEeCCCcEEE
Confidence 456889988888876665577778888876 3322 22111000 011134678999998887 4 556776667889
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeeccccccc
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPK 370 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~ 370 (497)
||..++... .+.. .. ......|.++...++|.+.+...++.+..+|..+ ++ ...+... ..
T Consensus 388 ~~~~~~~~~-----~~~~-~~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~-~~--- 447 (781)
T 3v9f_A 388 FENGKRVAI-----YNKE-NR--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-KK-FQIIELE-KN--- 447 (781)
T ss_dssp EETTEEEEE-----CC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-CE-EEECCST-TT---
T ss_pred EECCCCeEE-----EccC-CC--------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-Cc-EEEeccC-CC---
Confidence 998764321 1110 00 0112568888888888766644346788888764 33 3333211 00
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc-----CcceeeeEeecCCCcccccccce
Q 010933 371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-----KNENRKPILQAAPRARRSSLSNL 445 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~l 445 (497)
....+.++...+++.+.+ |+. +-|..|+..+++.... .... ...+.++...+ ++.+
T Consensus 448 --------~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~d~--~g~l------ 508 (781)
T 3v9f_A 448 --------ELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHH-YDTSNSQLLENFVRSIAQDS--EGRF------ 508 (781)
T ss_dssp --------CCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEE-ECTTTSSCSCSCEEEEEECT--TCCE------
T ss_pred --------CCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEec-ccCcccccccceeEEEEEcC--CCCE------
Confidence 001125788888777555 444 5688999877643321 1111 24455555544 3332
Q ss_pred eEeec-cCceecCCCCCccccc-----ccCCCeEEEEEecCCCEEEEEeCCce-EEEe
Q 010933 446 TRGLY-RQAHENSSSGHHELSY-----NLSSKLLHLAWHPTTNLIACANGNSL-FFHY 496 (497)
Q Consensus 446 ~~~~~-d~~~iw~~~~~~~~~~-----~~~~~i~~l~~~p~~~~la~~~~~~~-~i~~ 496 (497)
-.|.. .|...+.......... -....|.++...++|.+.+... +++ +.|+
T Consensus 509 Wigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 509 WIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp EEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred EEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence 33333 3334442221111111 1245788999888888666544 777 7664
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.35 E-value=9.8e-05 Score=63.20 Aligned_cols=210 Identities=9% Similarity=0.055 Sum_probs=121.3
Q ss_pred cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCC--ccEEEeecCchheeccccCCCCCcccccccc
Q 010933 86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 163 (497)
Q Consensus 86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (497)
.++.+.++ .|++. .-...+.|. + +.++.+.+.+ ..|+.+|+.+++...........
T Consensus 8 ~~~v~~~~-phd~~----------~ftqGL~~~--~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-------- 65 (243)
T 3mbr_X 8 GYRVVKRY-PHDTT----------AFTEGLFYL--R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-------- 65 (243)
T ss_dssp CEEEEEEE-ECCTT----------CCEEEEEEE--T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC--------
T ss_pred ceEEEEEc-CCCCc----------cccccEEEE--C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc--------
Confidence 34556666 66643 667789994 3 5566666664 48999999998865532211100
Q ss_pred ccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEe
Q 010933 164 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWN 241 (497)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd 241 (497)
.--.+++. ++.| +.. .++.+.+||
T Consensus 66 ----------------------------------------------------fgeGi~~~--~~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 66 ----------------------------------------------------FGAGIVAW--RDRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp ----------------------------------------------------CEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred ----------------------------------------------------ceeEEEEe--CCEEEEEEeeCCEEEEEE
Confidence 01122332 3444 445 899999999
Q ss_pred CccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933 242 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 321 (497)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (497)
.. ..+.+..+... + .+ ..++ +++ ..|+.+..++.|.++|..+.+.. +.+.... ...
T Consensus 92 ~~-tl~~~~ti~~~-----~-~G--wglt--~dg-~~L~vSdgs~~l~~iDp~t~~~~----~~I~V~~-~g~------- 147 (243)
T 3mbr_X 92 LA-TLTPRARFRYP-----G-EG--WALT--SDD-SHLYMSDGTAVIRKLDPDTLQQV----GSIKVTA-GGR------- 147 (243)
T ss_dssp TT-TTEEEEEEECS-----S-CC--CEEE--ECS-SCEEEECSSSEEEEECTTTCCEE----EEEECEE-TTE-------
T ss_pred CC-cCcEEEEEeCC-----C-Cc--eEEe--eCC-CEEEEECCCCeEEEEeCCCCeEE----EEEEEcc-CCc-------
Confidence 98 55666654322 1 11 3343 556 55666666889999999987654 3332200 000
Q ss_pred ccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeeccccccccccc-CCCCCccceeEEEEcCCCCEEEEEe
Q 010933 322 IIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGS 399 (497)
Q Consensus 322 ~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~ 399 (497)
.-..++.+.+. +|+..+.. ....|.+.|.++ ++.+..+....-.-.. ... .....+ .+.++++|+++.|+..+
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~~-~~~~~~~~~v--lNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPAS-GKVVAWIDLQALVPDA-DALTDSTNDV--LNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT-CBEEEEEECGGGSTTT-TSCCCTTSSC--EEEEEEETTTTEEEEEE
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCC-CCEEEEEECCcCcccc-ccccCCcCCc--eEEEEEcCCCCEEEEEC
Confidence 01234566665 67655444 348999999997 8888888754321000 000 001112 26899999877777666
Q ss_pred C
Q 010933 400 Y 400 (497)
Q Consensus 400 ~ 400 (497)
.
T Consensus 223 K 223 (243)
T 3mbr_X 223 K 223 (243)
T ss_dssp T
T ss_pred C
Confidence 4
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.33 E-value=0.00061 Score=70.08 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=42.3
Q ss_pred CCeeEEEeCCCCCEEEEE----cCCeEEEEeCccCc-ee-eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC---
Q 010933 215 FNINSISNNSDCETFVSA----DDLRINLWNLEISD-QC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--- 285 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--- 285 (497)
.....+.|+|||+.|+.. ....|+++|+.... .. ...+ .........++.|+..+ .+++....+
T Consensus 271 ~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l------~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~ 343 (751)
T 2xe4_A 271 LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV------RPREKGVRYDVQMHGTS-HLVILTNEGGAV 343 (751)
T ss_dssp TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES------SCCCTTCCEEEEEETTT-EEEEEECTTTCT
T ss_pred ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe------ecCCCCceEEEeeeeCC-EEEEEeCCCCCC
Confidence 345678999999988764 24578888887431 22 0221 22334555666655443 444444443
Q ss_pred -CeEEEEEccC
Q 010933 286 -GFVRLVDMRQ 295 (497)
Q Consensus 286 -g~i~v~d~~~ 295 (497)
..|..+|+.+
T Consensus 344 ~~~L~~~d~~~ 354 (751)
T 2xe4_A 344 NHKLLIAPRGQ 354 (751)
T ss_dssp TCEEEEEETTS
T ss_pred CcEEEEEcCCC
Confidence 2566667654
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.26 E-value=0.00033 Score=69.36 Aligned_cols=59 Identities=8% Similarity=0.016 Sum_probs=41.3
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 420 (497)
+.|..||+.+ ++.+.++...... ....+...+..++.++.||.|+.||.++++.+ ..++
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l-w~~~ 502 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDGKEL-WNFK 502 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCCCEE-EEEe
Confidence 6888999886 7777777644321 12223334667888999999999999998665 4444
No 262
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.22 E-value=0.00022 Score=72.28 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=48.2
Q ss_pred EEEEcC-CCCEEEEeecCC-----------eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc-cCcccccc
Q 010933 37 AIEFDK-TGDYLAVGDRGG-----------RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYL 103 (497)
Q Consensus 37 ~i~~sp-~g~~lasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~ 103 (497)
++++.| +|++++.|+.+. .+.+||..+++- ..+..+.. +.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w---------------------~~~~~~~~~~~------ 242 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV---------------------SDRTVTVTKHD------ 242 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB---------------------CCCEEEECSCC------
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE---------------------EeCcccCCCCC------
Confidence 556677 888888887543 578888877642 22222211 11
Q ss_pred cccccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchheec
Q 010933 104 KSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKK 147 (497)
Q Consensus 104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~ 147 (497)
....++++ ..++..++.|+ .+..+.+||..+++...
T Consensus 243 ------~~~~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~ 279 (656)
T 1k3i_A 243 ------MFCPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIP 279 (656)
T ss_dssp ------CSSCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred ------CccccccC--CCCCCEEEeCCCCCCceEEecCcCCceeE
Confidence 22334566 47888888887 45689999988776543
No 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.0015 Score=62.11 Aligned_cols=71 Identities=10% Similarity=0.171 Sum_probs=48.5
Q ss_pred eeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcE-EEEEeCCCeEEEEEc
Q 010933 217 INSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL-LAYSSSRGFVRLVDM 293 (497)
Q Consensus 217 v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~dg~i~v~d~ 293 (497)
...++++| +|.++++- .++.|..++.. .+....... .. .......++|+|++ ++ +++-...+.|..++.
T Consensus 228 p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~-----~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFT-----IQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEE-----CS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEE-----cC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEeC
Confidence 45678999 77766676 88999999987 443322211 11 12456899999999 74 444456789999887
Q ss_pred cC
Q 010933 294 RQ 295 (497)
Q Consensus 294 ~~ 295 (497)
..
T Consensus 300 d~ 301 (430)
T 3tc9_A 300 DW 301 (430)
T ss_dssp ET
T ss_pred Cc
Confidence 63
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.20 E-value=0.0008 Score=61.40 Aligned_cols=162 Identities=11% Similarity=0.022 Sum_probs=97.2
Q ss_pred CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCC-------------ccCCCCCCeEEEEEeC-CCCcEEE
Q 010933 216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-------------NMDDLTEVITSAEFHP-IYCNLLA 280 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~-~~~~~l~ 280 (497)
...++++.++++++.++ .++.|..|+.. .+.... +..... ........+..+++++ ++ .|+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g--~l~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGP-NSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN--QLY 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCT-TTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT--EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCC-CCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCC--cEE
Confidence 45678899999878888 89999999887 333222 111000 0001123578999998 55 455
Q ss_pred EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEe-----------------
Q 010933 281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD----------------- 342 (497)
Q Consensus 281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~----------------- 342 (497)
++...+.|..+|..++.. +.+...... ......+.+++.+ +|++.++-.
T Consensus 96 v~d~~~~i~~~d~~~g~~-----~~~~~~~~~--------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHA-----TQLATSVDG--------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EEETTTEEEEECTTCEEC-----EEEESEETT--------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred EEECCCCEEEEeCCCCEE-----EEecccCCC--------CcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 565556688888775532 111110000 0012367899999 998777642
Q ss_pred -cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcCC
Q 010933 343 -YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGV 411 (497)
Q Consensus 343 -~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~~ 411 (497)
.+.|..||... ++..........+ ..++|+|+++.|+.+ +..+.|.+|++..
T Consensus 163 ~~g~v~~~d~~~-~~~~~~~~~~~~p----------------~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 163 KTGRLIKYDPST-KETTLLLKELHVP----------------GGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp CCEEEEEEETTT-TEEEEEEEEESCC----------------CEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CCceEEEEeCCC-CEEEEeccCCccC----------------cceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 15688888754 4322222221111 479999999866655 5578999999875
No 265
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.19 E-value=0.00084 Score=58.28 Aligned_cols=219 Identities=12% Similarity=0.169 Sum_probs=121.4
Q ss_pred cceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc--ccccCcccccccccccc
Q 010933 33 DIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 33 ~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~~~~~ 109 (497)
+.+..++++|+++.| ++...++.|...|.+ ++. +.. +.+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-----------------------~~~i~l~g~------------- 69 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-----------------------IRTIPLDFV------------- 69 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-----------------------EEEEECSSC-------------
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-----------------------EEEEecCCC-------------
Confidence 479999999986655 456778888888887 432 222 2221
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.....|++ .+++.++++.-.++.+.++++.........
T Consensus 70 ~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~---------------------------------------- 107 (255)
T 3qqz_A 70 KDLETIEY--IGDNQFVISDERDYAIYVISLTPNSEVKIL---------------------------------------- 107 (255)
T ss_dssp SSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCCEEEE----------------------------------------
T ss_pred CChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCeeeee----------------------------------------
Confidence 23667888 567766666557788888887654311100
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc--cCceeeEEeecCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE--ISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
..... ... ........-.++|+|.++.|.++ ......+|.++ .....+.+.+.+...-..+-..+
T Consensus 108 ---~~~~~-------~~~--~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 108 ---KKIKI-------PLQ--ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ---EEEEC-------CCS--SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred ---eeecc-------ccc--cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 00000 000 01234457899999988777666 44344444443 11112222211000001123457
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 346 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i 346 (497)
.+++++|...++++....++.|.++|... +.. ..+........ +..-....-.|+|.++|++.+++.-+.+
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~----~~~~L~~g~~~----l~~~~~qpEGia~d~~G~lyIvsE~n~~ 246 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVG-EVI----GEMSLTKGSRG----LSHNIKQAEGVAMDASGNIYIVSEPNRF 246 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTC-CEE----EEEECSTTGGG----CSSCCCSEEEEEECTTCCEEEEETTTEE
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEE----EEEEcCCccCC----cccccCCCCeeEECCCCCEEEEcCCceE
Confidence 89999998746677777788999999764 332 22222000000 0000134678999999987777554766
Q ss_pred EEEec
Q 010933 347 KLWDI 351 (497)
Q Consensus 347 ~lwd~ 351 (497)
+.+.-
T Consensus 247 y~f~~ 251 (255)
T 3qqz_A 247 YRFTP 251 (255)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66643
No 266
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.13 E-value=0.0048 Score=56.27 Aligned_cols=156 Identities=12% Similarity=0.061 Sum_probs=82.0
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE-EEcc
Q 010933 216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL-VDMR 294 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v-~d~~ 294 (497)
.+..+.+.+++..++.+.++.|+. -...++..+.+ .......+..+++.|++ .+++++. +|.+.. .|-
T Consensus 123 ~~~~i~~~~~~~~~~~~~~g~v~~--S~DgG~tW~~~------~~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~- 191 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITNVGAIYR--TKDSGKNWQAL------VQEAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEP- 191 (327)
T ss_dssp CEEEEEEEETTEEEEEETTCCEEE--ESSTTSSEEEE------ECSCCCCEEEEEECTTS-CEEEEET-TSSEEEEECT-
T ss_pred CeEEEEEECCCCEEEEeCCccEEE--EcCCCCCCEEe------ecCCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCC-
Confidence 456676666676666665555432 22234444432 12344578899999987 7766554 444433 332
Q ss_pred CCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeeccccccccccc
Q 010933 295 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 374 (497)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
.++.- ..... .....+..+.+.+++++++++.+|.+++.+... ++.-..+......
T Consensus 192 gG~tW----~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~-G~tW~~~~~~~~~------- 247 (327)
T 2xbg_A 192 GQTAW----EPHNR------------TTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRR------- 247 (327)
T ss_dssp TCSSC----EEEEC------------CSSSCEEEEEECTTSCEEEEETTTEEEEEETTE-EEEECCCBCTTSS-------
T ss_pred CCCce----eECCC------------CCCCccceeEECCCCCEEEEeCCceEEEecCCC-CCeeEeccCCccc-------
Confidence 12111 11110 012457888899999888777778877764221 3322222211000
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 375 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 375 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
....+..+.+.+++..++++. +|.| ++..+.+
T Consensus 248 ----~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG 279 (327)
T 2xbg_A 248 ----NSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG 279 (327)
T ss_dssp ----CCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred ----CCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence 000125788988877666654 5655 3343433
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.09 E-value=0.0032 Score=59.92 Aligned_cols=180 Identities=9% Similarity=0.051 Sum_probs=93.0
Q ss_pred CeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCcee-eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE-EeCCCeEEEE
Q 010933 216 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-SSSRGFVRLV 291 (497)
Q Consensus 216 ~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~v~ 291 (497)
....++++| +|.+.++- .++.|+.++.. .+.. ..+.. . +.......++++|++ +.|+. -...+.|+.+
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~-~g~~~~~~~~-----~-~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~ 300 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPA-TGTLTEEEVM-----M-DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRV 300 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTT-TCCEEEEEEE-----C-SCCSSCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECC-CCeEEEEEec-----c-CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEE
Confidence 345678899 67666666 78899999987 3333 22211 1 112233579999999 74544 4557899998
Q ss_pred EccC--CcccccccceecccccccCCcc--ccccccccccEEEE---------eeCCCEEEEEec-CeEEEEecCCCCce
Q 010933 292 DMRQ--SALCDHSARILRDAAESHGSKS--FFTEIIASISDIKF---------ANDGQHLLSRDY-MNLKLWDIRMDSTP 357 (497)
Q Consensus 292 d~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~---------s~~g~~l~~~~~-~~i~lwd~~~~~~~ 357 (497)
++.. +... ....+.+......... .....-.....+++ .++|.++++-.. +.|+.++.. + .
T Consensus 301 ~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~ 375 (433)
T 4hw6_A 301 DYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-R 375 (433)
T ss_dssp EBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-E
T ss_pred eCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-C
Confidence 8753 2211 0011111000000000 00000123567888 666665555443 889988852 5 3
Q ss_pred eeeeeeccc-----ccccccccCCCCCccceeEEEEc-CCCCEEEEEeCCCcEEEEEcC
Q 010933 358 VATFKIHEH-----LRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 358 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~dg~i~vw~~~ 410 (497)
+.++.+... .... ..........-..++++ +++.++++=...++|+.++++
T Consensus 376 v~t~~G~g~~~~~G~~dG--~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDG--ELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCTTCSSCCBCE--ETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCccccCCC--ccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 444433211 0000 00000011112579999 566666666667788888764
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.04 E-value=0.00053 Score=70.50 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=73.0
Q ss_pred CCCC-CeeEEEeC-CCCCEEEEE--cCC----eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe
Q 010933 212 AHDF-NINSISNN-SDCETFVSA--DDL----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 283 (497)
Q Consensus 212 ~h~~-~v~~~~~~-~~~~~l~~~--~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 283 (497)
+|.. .+...+|| |||+.|+.+ .+| .|+++|+.++...+. ..+ ......++|+|+| +.|+...
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~------~~~---~~~~~~~~WspDg-~~l~y~~ 239 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA------DKV---SGTNGEIVWGPDH-TSLFYVT 239 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC------CCE---EEECSCCEECSST-TEEEEEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC------ccc---cCceeeEEEecCC-CEEEEEE
Confidence 4443 57789999 999999875 233 599999984303211 001 1123467899999 7777666
Q ss_pred CC-----CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----cCeEEEEecCC
Q 010933 284 SR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRM 353 (497)
Q Consensus 284 ~d-----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~lwd~~~ 353 (497)
.| ..|.++++.++.... ..++.. . .......+.|+|||++|+... ...|+++|+..
T Consensus 240 ~d~~~~~~~v~~~~lgt~~~~~--~lv~~~-~-----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 240 KDETLRENKVWRHVMGKLQSED--VCLYEE-H-----------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp ECTTCCEEEEEEEETTSCGGGC--EEEEEC-C-----------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred ECCCCCCCEEEEEECCCCchhc--EEEEec-C-----------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 54 257778887653211 022221 0 012346788999999988753 25788889875
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.03 E-value=0.0013 Score=65.27 Aligned_cols=59 Identities=8% Similarity=0.003 Sum_probs=38.5
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 420 (497)
|.|..||+.+ ++.+.+....... ..-.....+.+++.++.||.++.||.++++.+ ..++
T Consensus 453 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l-W~~~ 511 (599)
T 1w6s_A 453 GQIKAYNAIT-GDYKWEKMERFAV----------------WGGTMATAGDLVFYGTLDGYLKARDSDTGDLL-WKFK 511 (599)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEE
T ss_pred CeEEEEECCC-CCEEeEecCCCCc----------------cCcceEecCCEEEEECCCCeEEEEECCCCCEE-EEee
Confidence 5677788876 6766665432111 11112235677888999999999999999665 4444
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.00 E-value=0.0014 Score=64.87 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=41.6
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 421 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 421 (497)
|.|..||+.+ ++.+.+....... ..-.....+.+++.|+.||.++.||.++++.+ ..++.
T Consensus 466 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l-W~~~~ 525 (582)
T 1flg_A 466 GSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL-WKFQT 525 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEEC
T ss_pred ceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCCCEE-EEecC
Confidence 7789999987 7877776644321 11122224668888999999999999999665 44443
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.92 E-value=0.012 Score=53.35 Aligned_cols=158 Identities=10% Similarity=0.010 Sum_probs=95.1
Q ss_pred CeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-C-CeEEEE
Q 010933 216 NINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFVRLV 291 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-g~i~v~ 291 (497)
....+++.+.+..|. +- ..+.|.+++.. +.....++ .........++++|.+ ..|+.+.. . +.|...
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~iavdp~~-g~ly~~d~~~~~~I~~~ 148 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKG 148 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEE-------ECCCCCcceEEeCCCC-CEEEEEccCCCCeEEEE
Confidence 346788886555554 44 78899999987 33322221 1123456899999976 45554444 3 688888
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeec-cccc
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH-EHLR 368 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~-~~~~ 368 (497)
++.... . +.+.. ..-...+.++++|++..|..++. +.|..+|+. +.....+... ....
T Consensus 149 ~~dG~~-~----~~~~~------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~~ 209 (316)
T 1ijq_A 149 GLNGVD-I----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA 209 (316)
T ss_dssp ETTSCC-E----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTS
T ss_pred cCCCCC-e----EEEEE------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCCccC
Confidence 875422 1 11111 00134688999998887777643 799999986 3333333221 1100
Q ss_pred ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
. -..+++. .+.++++-...+.|..++..+++..
T Consensus 210 ----------~---P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 210 ----------H---PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp ----------S---EEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred ----------C---cEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 0 0467775 3555556667789999998777554
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.84 E-value=0.021 Score=53.64 Aligned_cols=174 Identities=9% Similarity=0.009 Sum_probs=101.9
Q ss_pred CCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--CCeEEE
Q 010933 215 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRL 290 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~v 290 (497)
.....+++.+.+..|.. - ..+.|.+.+++ +.....+ +.........++++|.+ ..|+.... .+.|..
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l-------~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK 229 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEE-------EECSSCCEEEEEEETTT-TEEEEEECSSSCCEEE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEE-------EeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEE
Confidence 45678888875555544 4 78899999987 4333322 12223456899999976 55555543 368888
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeec-ccc
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH-EHL 367 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~-~~~ 367 (497)
.++...... ..... .-...+.|++++++..|+.++. +.|..+|+. +.....+... ...
T Consensus 230 ~~~dG~~~~----~~~~~-------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~l 290 (400)
T 3p5b_L 230 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL 290 (400)
T ss_dssp EETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEEEECSSTT
T ss_pred EeCCCCccE----EEEEC-------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEEEeCCCCC
Confidence 887653221 11111 0135688999998888877743 889999986 3333333221 111
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEe
Q 010933 368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 431 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 431 (497)
. . -..+++. .+.++.+-...+.|..++..+++.. ..+.........+++
T Consensus 291 ~----------~---P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~-~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 291 A----------H---PFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV-NLLAENLLSPEDMVL 339 (400)
T ss_dssp S----------S---EEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC-EEEECSCSCEEEEEE
T ss_pred C----------C---CEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce-EEEecCCCCCceEEE
Confidence 0 0 0356663 3345556666788999997777555 444433333344443
No 273
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.84 E-value=0.0082 Score=59.37 Aligned_cols=25 Identities=4% Similarity=0.098 Sum_probs=20.5
Q ss_pred CCEEEEEeCCccEEEeecCchheec
Q 010933 123 GSMFILSTNDKTIKLWKVRDQKVKK 147 (497)
Q Consensus 123 ~~~l~s~s~d~~i~iw~~~~~~~~~ 147 (497)
+..++.++.|+.+..+|..+|+...
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4578888889999999999888544
No 274
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.83 E-value=0.054 Score=58.04 Aligned_cols=121 Identities=8% Similarity=0.087 Sum_probs=67.9
Q ss_pred cEEEEEe----------CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933 277 NLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 346 (497)
Q Consensus 277 ~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i 346 (497)
.+|++|+ ..|.|++|++..+++. .+.+. ...+++++++-- +| +|++|-...|
T Consensus 845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~----lv~~~------------~v~g~v~al~~~-~g-~Lla~ig~~l 906 (1158)
T 3ei3_A 845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ----TVAEK------------EVKGAVYSMVEF-NG-KLLASINSTV 906 (1158)
T ss_dssp CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE----EEEEE------------EESSCEEEEEEE-TT-EEEEEETTEE
T ss_pred EEEEEEeeecCCCCCCCCceEEEEEEEECCEEE----EEEEE------------EcCCcCEEEeee-CC-EEEEEcCCEE
Confidence 6888886 3588999999743321 11111 123567777643 45 6777767999
Q ss_pred EEEecCCCCceee-eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc--C
Q 010933 347 KLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG--K 423 (497)
Q Consensus 347 ~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~--~ 423 (497)
++|++.. .+.+. ....... + ..+.....+.+++.|..-..+.++..+........+..+ .
T Consensus 907 ~vy~l~~-~~~L~~~~~~~~~-i---------------~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~ 969 (1158)
T 3ei3_A 907 RLYEWTT-EKELRTECNHYNN-I---------------MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP 969 (1158)
T ss_dssp EEEEECT-TSCEEEEEEECCC-S---------------CEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSC
T ss_pred EEEECCC-CceEEEEeecccc-E---------------EEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeeccc
Confidence 9999975 44333 1111111 1 122333357789999987787776655433333333333 3
Q ss_pred cceeeeEee
Q 010933 424 NENRKPILQ 432 (497)
Q Consensus 424 ~~v~~~~~~ 432 (497)
..+.++.+-
T Consensus 970 ~~vta~~~l 978 (1158)
T 3ei3_A 970 NWMSAVEIL 978 (1158)
T ss_dssp BCEEEEEEE
T ss_pred ccEEEEEEE
Confidence 344455554
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=0.015 Score=55.19 Aligned_cols=154 Identities=8% Similarity=0.015 Sum_probs=90.8
Q ss_pred CeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CC----eE
Q 010933 216 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG----FV 288 (497)
Q Consensus 216 ~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg----~i 288 (497)
....++++| ++..|..+ ..+.|+.+|.. .+....+. ........+++++++ +.|+++.. ++ .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-~~~v~~~~--------~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v 207 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-KEYVSTVY--------SGLSKVRTICWTHEA-DSMIITNDQNNNDRPNN 207 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETT-TTEEEEEE--------CCCSCEEEEEECTTS-SEEEEEECCSCTTSEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECC-CCEEEEEe--------cCCCCcceEEEeCCC-CEEEEEeCCCCcccceE
Confidence 556889998 35556555 44889999987 44443331 234567899999999 75555554 22 23
Q ss_pred EEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEe-cCeEEEEecCCCCceeeeeeeccc
Q 010933 289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
.+++ ..+..... ..+.. ......++++| +|.++++-. .+.|..++... +...........
T Consensus 208 ~~~~-~~g~~~~~--~~l~~--------------~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~~ 269 (430)
T 3tc9_A 208 YILT-RESGFKVI--TELTK--------------GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQDS 269 (430)
T ss_dssp EEEE-GGGTSCSE--EEEEE--------------CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSSS
T ss_pred EEEe-CCCceeee--eeecc--------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCCC
Confidence 3344 33322110 11111 13467889999 666555543 38999999864 332122211111
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCC
Q 010933 367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGV 411 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~ 411 (497)
.. -..++|+|++++|+ +-...+.|..++.+.
T Consensus 270 ~~--------------P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 270 GW--------------EFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SC--------------CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred Cc--------------ceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 00 05899999999555 445678899988763
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.76 E-value=0.023 Score=51.71 Aligned_cols=159 Identities=8% Similarity=-0.003 Sum_probs=89.0
Q ss_pred CCCCeeEEEeCCCCCEEEEEcCCeEEE-EeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 010933 213 HDFNINSISNNSDCETFVSADDLRINL-WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 291 (497)
Q Consensus 213 h~~~v~~~~~~~~~~~l~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~ 291 (497)
....+..+.+.+++..++.+.++.++. .|- .+...+.+. ......+..+.+.+++ .++ .++.+|.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s 230 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFS 230 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEE-EEETTTEEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEE-EEeCCceEEEe
Confidence 344678899999998888885555444 332 133333221 1244678899999987 554 55678888776
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccc
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 371 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 371 (497)
+...++ .+..... +. + .....+..+.+.+++.+++++.++.+ ++.... ++.-..+......-
T Consensus 231 ~~D~G~-------tW~~~~~-~~----~-~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~Dg-G~tW~~~~~~~~~~--- 292 (327)
T 2xbg_A 231 DPDNSE-------NWGELLS-PL----R-RNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDG-GQTWQQDVDVKKVP--- 292 (327)
T ss_dssp ETTEEE-------EECCCBC-TT----S-SCCSCEEEEEESSSSCEEEEESTTCE-EEESST-TSSCEECGGGTTSS---
T ss_pred cCCCCC-------eeEeccC-Cc----c-cCCcceEEEEecCCCEEEEEeCCCeE-EEeCCC-CcccEEcCccCCCC---
Confidence 533232 2221000 00 0 00134788889888888888877766 344432 43333332111000
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
.. +.++.|.++++ +++++.+|.|.-++-
T Consensus 293 ------~~---~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 293 ------SN---FYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp ------SC---CCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred ------CC---eEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 01 14788875554 667778898776653
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.73 E-value=0.0097 Score=55.67 Aligned_cols=157 Identities=9% Similarity=-0.050 Sum_probs=94.8
Q ss_pred CCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933 215 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 292 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 292 (497)
..+..++|.+.+..|.. - ..+.|+.++.. +.....++ .........+++++.+..++++-...+.|.+.+
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCEEEEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecC-CCCcEEEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 35778999976555554 4 78899999988 33332221 112234467889876525555555678888888
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c-CeEEEEecCCCCceeeeeeecccccc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRP 369 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~lwd~~~~~~~~~~~~~~~~~~~ 369 (497)
+...... ..+.. .......++++|.+..|+.++ . +.|..+++. +.....+.......
T Consensus 188 ~dg~~~~----~l~~~-------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~- 247 (386)
T 3v65_B 188 LDGAHRK----VLLWQ-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFW- 247 (386)
T ss_dssp TTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCSC-
T ss_pred CCCCceE----EeecC-------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCC-
Confidence 7643211 11111 013468899999877776654 3 667777775 44333332111100
Q ss_pred cccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q 010933 370 KLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 412 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~ 412 (497)
-..++|+|++..|+.+. ..+.|..++++..
T Consensus 248 -------------PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 248 -------------PNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp -------------EEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred -------------eeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 15899998776666554 5678999998643
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.72 E-value=0.026 Score=51.89 Aligned_cols=156 Identities=9% Similarity=-0.039 Sum_probs=95.3
Q ss_pred CeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933 216 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 293 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~ 293 (497)
.+..++|.+.+..|..+ ..+.|+.++.. +.....++ .........+++++.+.+++++-...+.|.+.++
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~-------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 145 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 145 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecC-CCCceEEE-------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence 47789999766555554 78899999988 33322221 1122345788999865255555566789999998
Q ss_pred cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c-CeEEEEecCCCCceeeeeeeccccccc
Q 010933 294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPK 370 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 370 (497)
...... ..... .......++++|.+..|+..+ . +.|..+++. +.....+.......
T Consensus 146 dG~~~~----~l~~~-------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~-- 204 (349)
T 3v64_C 146 DGAHRK----VLLWQ-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFW-- 204 (349)
T ss_dssp TSCSCE----EEECT-------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCCSSCSC--
T ss_pred CCCceE----EEEeC-------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCC--
Confidence 754211 11111 013468899999777666654 3 667777775 43333332111100
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCC
Q 010933 371 LCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 412 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~ 412 (497)
-..++++|++..|+.+. ..+.|..++++..
T Consensus 205 ------------PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 205 ------------PNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp ------------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ------------cceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 15899998777666554 4678999998753
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.69 E-value=0.029 Score=50.80 Aligned_cols=157 Identities=11% Similarity=0.036 Sum_probs=94.1
Q ss_pred CeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--CCeEEEE
Q 010933 216 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLV 291 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~v~ 291 (497)
....+++.+.+..|.. - ..+.|.+++.+ +.....+ ..........++++|.+ ..|+.+.. .+.|...
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~ 150 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERA 150 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcEEEE-------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEE
Confidence 4557888875555544 4 77899999987 3322222 12233456899999976 55555543 5788888
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeecccccc
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRP 369 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~ 369 (497)
++..... ..+.. . .-...+.++++|++..|..++. +.|..+|+. +.....+.......
T Consensus 151 ~~dG~~~-----~~~~~-~-----------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~- 210 (318)
T 3sov_A 151 GMDGSSR-----FIIIN-S-----------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH- 210 (318)
T ss_dssp ETTSCSC-----EEEEC-S-----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCSC-
T ss_pred EcCCCCe-----EEEEE-C-----------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCCC-
Confidence 8764321 11111 0 0134588999998877777643 889999986 33333332111100
Q ss_pred cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 370 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
-..+++.. +.++.+-...+.|..++..+++..
T Consensus 211 -------------P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 211 -------------PFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp -------------EEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred -------------ceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 03677753 345555556789999998777554
No 280
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.64 E-value=0.017 Score=58.43 Aligned_cols=63 Identities=6% Similarity=0.024 Sum_probs=43.5
Q ss_pred CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeee
Q 010933 285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI 363 (497)
Q Consensus 285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~ 363 (497)
+|.|..||+.+++...+ ... ........+...+.+++.++ ++.++.||.++ ++.+..++.
T Consensus 437 ~g~l~A~D~~tG~~~W~----~~~--------------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t-G~~l~~~~~ 497 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWK----VPY--------------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEA 497 (668)
T ss_dssp EEEEEEEETTTTEEEEE----EEE--------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred cceEEEEeCCCCcEEEE----ccC--------------CCCCcCceeEeCCCEEEEECCcccchhhhhhc-ChhheEecC
Confidence 37899999998875421 111 12233344556778888885 49999999987 898888876
Q ss_pred ccc
Q 010933 364 HEH 366 (497)
Q Consensus 364 ~~~ 366 (497)
...
T Consensus 498 ~~~ 500 (668)
T 1kv9_A 498 QSG 500 (668)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 281
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.63 E-value=0.062 Score=53.16 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.6
Q ss_pred CCEEEEEeCCccEEEeecCchheec
Q 010933 123 GSMFILSTNDKTIKLWKVRDQKVKK 147 (497)
Q Consensus 123 ~~~l~s~s~d~~i~iw~~~~~~~~~ 147 (497)
+..++.++.|+.|..+|..+|+...
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W 141 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVW 141 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEe
Confidence 4578888899999999999988654
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.61 E-value=0.084 Score=54.08 Aligned_cols=158 Identities=8% Similarity=-0.003 Sum_probs=95.4
Q ss_pred CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-C-CeEEE
Q 010933 215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFVRL 290 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-g~i~v 290 (497)
.....|++.+.++.|+.+ ..+.|.+.+++ +.....+ +.........|+++|.+ ..|+.+.. . +.|..
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l-------~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKK 541 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-------EECTTCCEEEEEEETTT-TEEEEEECSSSCEEEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEE-------EeCCCCCcceEEEecCC-CCEEEecCCCCCeEEE
Confidence 345678888877666655 78899999988 4333222 12233457899999986 55555543 3 68888
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeee-ecccc
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK-IHEHL 367 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~-~~~~~ 367 (497)
.++...... ..... .....+.|++++.+..|+.++. +.|..+++. +.....+. .....
T Consensus 542 ~~~dG~~~~----~lv~~-------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l 602 (791)
T 3m0c_C 542 GGLNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRL 602 (791)
T ss_dssp EETTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTT
T ss_pred EecCCCceE----EEEeC-------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCcc
Confidence 888654321 11111 0135788999988777777643 788888885 44333332 21111
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcCCCCcc
Q 010933 368 RPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~~~~~~ 415 (497)
. . -..|++. +..|+ +-...+.|...+..+++.+
T Consensus 603 ~----------~---P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 603 A----------H---PFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp S----------S---EEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred C----------C---CCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence 0 0 0356653 33444 4445688888887777555
No 283
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.59 E-value=0.031 Score=51.05 Aligned_cols=167 Identities=10% Similarity=0.052 Sum_probs=93.1
Q ss_pred CeeEEEeCCCCCEEEEE-------------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC--CCCcEEE
Q 010933 216 NINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLA 280 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~ 280 (497)
..-++...|+|..++++ .+|.|.++|.+........+......+....-....+.+.+ ++...|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566677887666664 58899999987332222222111100222345677888766 3422444
Q ss_pred EE-eC--CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----c----------
Q 010933 281 YS-SS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y---------- 343 (497)
Q Consensus 281 ~~-~~--dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~---------- 343 (497)
++ .. +..|.+|++............++.. .-...+.+.+.++|.+.++.. +
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~------------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~ 198 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK------------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL 198 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCT------------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccC------------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence 44 33 4678888876543222222222220 014578999999998877753 1
Q ss_pred --CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCC
Q 010933 344 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV 411 (497)
Q Consensus 344 --~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~ 411 (497)
..-++|.+.. ++......+-..+ +.++|+||++.|+.+. ..++|+.|++..
T Consensus 199 ~~~~g~vyr~d~-~~~~~~~~~l~~p----------------NGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 199 GLAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TCCCEEEEEECT-TCCEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCccEEEEEEC-CeEEEeecCCccc----------------CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 1233444432 3222222222211 6899999998877665 578999999874
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.55 E-value=0.0064 Score=57.78 Aligned_cols=170 Identities=9% Similarity=-0.024 Sum_probs=88.4
Q ss_pred CCeeEEEeCCCCCEEEEEcCC-----eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC-CCCcEEEEEeCCCeE
Q 010933 215 FNINSISNNSDCETFVSADDL-----RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFV 288 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i 288 (497)
.....++++++|+++++...+ .+...+.......... +. .-.....++++| ++ .++++-..++.|
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~-------~~-~~~~P~giavd~~~G-~lyv~d~~~~~V 252 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLS-------LC-NARGAKTCAVHPQNG-KIYYTRYHHAMI 252 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEE-------EE-ECSSBCCCEECTTTC-CEEECBTTCSEE
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccc-------cc-ccCCCCEEEEeCCCC-eEEEEECCCCEE
Confidence 457889999999955554321 2333333211110011 11 123346788999 66 655555567899
Q ss_pred EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCC-Cce--eeeeee
Q 010933 289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMD-STP--VATFKI 363 (497)
Q Consensus 289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~-~~~--~~~~~~ 363 (497)
+.+|..++.... ..+.. .. ...-..++|+|+|++|..++ . +.|+.++.... +.. ...+.+
T Consensus 253 ~~~d~~~g~~~~---~~~~~-~~-----------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag 317 (433)
T 4hw6_A 253 SSYDPATGTLTE---EEVMM-DT-----------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG 317 (433)
T ss_dssp EEECTTTCCEEE---EEEEC-SC-----------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred EEEECCCCeEEE---EEecc-CC-----------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence 999988664311 11111 00 11234699999999776664 3 88999887531 211 122222
Q ss_pred cccccccccc-cCCCCCccceeEEEE---------cCCCCEEEEEeCCCcEEEEEc
Q 010933 364 HEHLRPKLCD-LYNNDSIFDKFECSV---------SGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 364 ~~~~~~~~~~-~~~~~~~~~~~~~~~---------s~~~~~l~s~~~dg~i~vw~~ 409 (497)
..... ...+ .........-..+++ .+++.++++-...++|+.++.
T Consensus 318 ~~g~~-g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 318 QHSSP-GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp CTTCC-CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred cCCCC-ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 21000 0000 000000111146888 667777766667778888874
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.52 E-value=0.027 Score=50.83 Aligned_cols=150 Identities=9% Similarity=0.096 Sum_probs=85.1
Q ss_pred CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE--eCCCCc-EEEEEeCCCeEEEEEcc---CCcccccccceec
Q 010933 234 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMR---QSALCDHSARILR 307 (497)
Q Consensus 234 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~-~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~ 307 (497)
+++|.+|++......+..+.-....+..-...+..+++ +|.... ++++...+|.+..|++. .++...+.++.+.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 68999997742222333320000000011155677787 674313 67778889999999984 3323333334554
Q ss_pred ccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCC----CceeeeeeecccccccccccCCCCCccc
Q 010933 308 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD----STPVATFKIHEHLRPKLCDLYNNDSIFD 382 (497)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (497)
. .+.+-.+...+....|+.+.+ ..|..++.+.. .+.+..+.. ... ..+
T Consensus 178 l--------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l------------~aD 230 (355)
T 3amr_A 178 M--------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHL------------TRD 230 (355)
T ss_dssp C--------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSB------------CSC
T ss_pred C--------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-Ccc------------ccC
Confidence 4 246778889988888888865 44666665421 223333321 111 011
Q ss_pred eeEEEE--cCCCC-EEEEEe-CCCcEEEEEcC
Q 010933 383 KFECSV--SGDGL-HFATGS-YSNLLRIFSHG 410 (497)
Q Consensus 383 ~~~~~~--s~~~~-~l~s~~-~dg~i~vw~~~ 410 (497)
+-.+++ .++++ +|++.+ .++...+||.+
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 245666 55666 677666 47799999997
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.46 E-value=0.02 Score=51.18 Aligned_cols=182 Identities=10% Similarity=0.013 Sum_probs=104.8
Q ss_pred CCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCcc-CCCCCCeEEEEE---eCCCCcEEEEEeC-
Q 010933 212 AHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEF---HPIYCNLLAYSSS- 284 (497)
Q Consensus 212 ~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~---~~~~~~~l~~~~~- 284 (497)
......-+++|.+ ++.++++. ..++|..|+.. .+....+ ..+.... ......+..+.| .|++ .++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~ 86 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNA 86 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEET
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccc
Confidence 3344556789977 55555666 89999999987 3433333 1110000 001123578999 6887 77775442
Q ss_pred ------------CCeEEEEEcc---CCcccccccceecccccccCCcccccc-ccccccEEEEeeCCCEEEEEec--CeE
Q 010933 285 ------------RGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRDY--MNL 346 (497)
Q Consensus 285 ------------dg~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~--~~i 346 (497)
+..|..||+. +++... .......... .+...+ -....+.++..++|+..++++. +.|
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~----~~dL~~~~~~-~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I 161 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVW----SVNFEKVQDE-FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI 161 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSE----EEESHHHHHH-HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEE----EecCcccccc-ccccccccccCCceeEECCCCCEEEeCCCCCCeE
Confidence 6789999998 665431 1111000000 000000 0124789999999998887653 555
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
...+. +++.+..+........ .....+.++++|+|+.|++....|.|..+|+.+.
T Consensus 162 ~rV~p--dG~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 162 ARVSA--DGKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEECT--TSCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EEEeC--CCCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 55554 3554443322221100 1111258999999999988877999999998843
No 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.45 E-value=0.06 Score=48.64 Aligned_cols=122 Identities=7% Similarity=0.015 Sum_probs=69.7
Q ss_pred CCeeEEEeCCCCCEEEEE--cC-CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCCeEEE
Q 010933 215 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL 290 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v 290 (497)
.....+++.|.+..|..+ .. +.|...+++ +.....+ ....-.....+++++++ ..|+.+ +..+.|..
T Consensus 120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~-------~~~~~~~P~gla~d~~~-~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS 190 (316)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEE-------EECCCCCceEEEEeccC-CEEEEEECCCCeEEE
Confidence 356789999866655544 33 788888887 3322222 11223457899999887 555555 45679999
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeee
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 362 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~ 362 (497)
+|+..... +.+.... ........+++. .+.++.+-.. +.|..++..+ ++.+..+.
T Consensus 191 ~d~dg~~~-----~~~~~~~----------~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~-g~~~~~i~ 246 (316)
T 1ijq_A 191 IDVNGGNR-----KTILEDE----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA 246 (316)
T ss_dssp EETTSCSC-----EEEEECT----------TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT-CCCCEEEE
T ss_pred EecCCCce-----EEEeecC----------CccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC-CcceEEEe
Confidence 99874321 2221100 001234567774 3434444333 8898888765 55555443
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.37 E-value=0.028 Score=56.71 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=48.8
Q ss_pred CCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CC-----
Q 010933 214 DFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR----- 285 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d----- 285 (497)
.....++++..++++++.| .+..+.+||.. ...-...- .+.. ...-.+++..+++ ++++.|+ .+
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~-t~~W~~~~-----~~~~-~R~~~s~~~~~dg-~iyv~GG~~~~~~~~ 313 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS-SDSWIPGP-----DMQV-ARGYQSSATMSDG-RVFTIGGSWSGGVFE 313 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSSTTCEEEEEGG-GTEEEECC-----CCSS-CCSSCEEEECTTS-CEEEECCCCCSSSCC
T ss_pred CCccccccCCCCCCEEEeCCCCCCceEEecCc-CCceeECC-----CCCc-cccccceEEecCC-eEEEEeCcccCCccc
Confidence 3344467778899999987 56789999988 33322221 1111 1122345666788 8888888 34
Q ss_pred CeEEEEEccCCc
Q 010933 286 GFVRLVDMRQSA 297 (497)
Q Consensus 286 g~i~v~d~~~~~ 297 (497)
..+.+||..+.+
T Consensus 314 ~~~e~yd~~t~~ 325 (656)
T 1k3i_A 314 KNGEVYSPSSKT 325 (656)
T ss_dssp CCEEEEETTTTE
T ss_pred ccceEeCCCCCc
Confidence 568999998754
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.36 E-value=0.0021 Score=65.21 Aligned_cols=157 Identities=11% Similarity=0.016 Sum_probs=87.2
Q ss_pred eeEEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-C-CeEEEEE
Q 010933 217 INSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-R-GFVRLVD 292 (497)
Q Consensus 217 v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d-g~i~v~d 292 (497)
...+++.+.+..| ++- ..+.|.+++.. +.....+ +.........++++|.+ ..|+.+.. . +.|..++
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l-------~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEE-------CCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCC
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecC-CCceEEE-------EeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEe
Confidence 3457777544444 444 67889999987 3333322 11122345788999876 44444433 2 6777777
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccccccc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK 370 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~ 370 (497)
+..... +.+.. ......+.|+|+|++..|+.++. +.|..+++. +.....+........
T Consensus 526 ~dG~~~-----~~l~~------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~- 585 (699)
T 1n7d_A 526 LNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA- 585 (699)
T ss_dssp SSSCCC-----CEESC------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCS-
T ss_pred CCCCCe-----eEEEe------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCC-
Confidence 654221 11111 00134678999998777766643 789999986 332333221110000
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
.. ..+++..+ .++++....+.|..++..+++.
T Consensus 586 --------~P---~glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 586 --------HP---FSLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp --------SC---CCCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred --------Cc---eEeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 00 25666544 4444555678999999877643
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.36 E-value=0.099 Score=48.99 Aligned_cols=122 Identities=9% Similarity=0.027 Sum_probs=69.8
Q ss_pred CCeeEEEeCCCCCEEEEE--c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCCeEEE
Q 010933 215 FNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL 290 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v 290 (497)
.....+++.|.+..|... . .+.|...+++ +.....+ ....-.....+++++++ ..|+.+ +..+.|..
T Consensus 202 ~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~-------~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 202 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS 272 (400)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred CCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEE-------EECCCCceEEEEEEeCC-CEEEEEECCCCEEEE
Confidence 346789999866666554 2 4788888887 3332222 12223567899999887 556555 44688999
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeee
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 362 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~ 362 (497)
+|+...... ..... . ........+++. .+.++.+-.. +.|..+|..+ ++.+..+.
T Consensus 273 ~d~dG~~~~----~~~~~-~----------~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~-G~~~~~i~ 328 (400)
T 3p5b_L 273 IDVNGGNRK----TILED-E----------KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA 328 (400)
T ss_dssp EETTSCCCE----EEEEC-S----------STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSS-CCCCEEEE
T ss_pred EeCCCCccE----EEEeC-C----------CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCC-CCceEEEe
Confidence 998654321 11111 0 001223466663 3333334333 8888888655 55555554
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.36 E-value=0.088 Score=48.37 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=62.7
Q ss_pred CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC---CCcEEEEEeCC-----C
Q 010933 215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSSR-----G 286 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~d-----g 286 (497)
...+.++|.|+|+++++-.++.|++++ . . ....+..++ ...........++++|+ +..+.++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g-~~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-G-RLSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-T-T-EEEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-C-C-CccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 356799999999966666669999998 3 2 222111111 12223456799999998 41444433332 6
Q ss_pred eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
.|..++...+.. ......+....... -..| ....++|.|||.+.++-
T Consensus 106 ~v~r~~~~~~~~-~~~~~l~~~~p~~~-----~~~h--~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERG-VLDRVVLDGIPARP-----HGLH--SGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEECSSCE-EEEEEEEEEECCCT-----TCCC--CCCCEEECTTSCEEEEC
T ss_pred EEEEEEeCCCCc-CceEEEEEeCCCCC-----CCCc--CCceEEECCCCCEEEEE
Confidence 788888764321 11111221100000 0112 24689999999766663
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.33 E-value=0.16 Score=52.02 Aligned_cols=119 Identities=9% Similarity=0.027 Sum_probs=68.0
Q ss_pred CCeeEEEeCCCCCEEEEE--cC-CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CCCeEEE
Q 010933 215 FNINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRL 290 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v 290 (497)
.....|++.|.+..|+.+ .. +.|...++. +.....+ ....-.....|++++.+ ..|+.+. ..+.|..
T Consensus 514 ~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~l-------v~~~l~~P~GLavD~~~-~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 514 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLS-GRLYWVDSKLHSISS 584 (791)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred CCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEE-------EeCCCCCceEEEEecCC-CeEEEEeCCCCcEEE
Confidence 357789999876566554 33 788888887 3333332 22223567899999877 5555554 4678999
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCceeee
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVAT 360 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~~~ 360 (497)
+++...... .+... . .......+|++ .+..|+.++ . +.|...+..+ ++.+..
T Consensus 585 ~d~dG~~~~----~v~~~-~----------~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~t-G~~~~~ 638 (791)
T 3m0c_C 585 IDVNGGNRK----TILED-E----------KRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLT-GSDVNL 638 (791)
T ss_dssp EETTSCSCE----EEEEC-T----------TTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTT-CCCCEE
T ss_pred EecCCCceE----EEecC-C----------CccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCC-CcceEE
Confidence 998654321 12111 0 00012345555 344565553 3 7888887654 443333
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.31 E-value=0.0094 Score=53.34 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=53.7
Q ss_pred CeeEEEeCCCCCEEEEE-cC-CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933 216 NINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 293 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~ 293 (497)
....++..++|+..+++ .. +.|...+.. +. ....+.+... ........+.|+++|+| ++|++....|.|..+|+
T Consensus 138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~-~~~~~~~~~~-~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 138 GVVQSAQDRDGNSYVAFALGMPAIARVSAD-GK-TVSTFAWESG-NGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDV 213 (334)
T ss_dssp EEEEEEECTTSCEEEEEEESSCEEEEECTT-SC-CEEEEEECCC-CSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEEC
T ss_pred CCceeEECCCCCEEEeCCCCCCeEEEEeCC-CC-EEeeeeecCC-CcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcC
Confidence 47889999999999987 66 887777766 33 3333322210 11223346799999999 88888877999999998
Q ss_pred cC
Q 010933 294 RQ 295 (497)
Q Consensus 294 ~~ 295 (497)
+.
T Consensus 214 ~~ 215 (334)
T 2p9w_A 214 SK 215 (334)
T ss_dssp SS
T ss_pred CC
Confidence 84
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.26 E-value=0.19 Score=50.14 Aligned_cols=154 Identities=8% Similarity=0.033 Sum_probs=93.8
Q ss_pred CeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--CCeEEEE
Q 010933 216 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLV 291 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~v~ 291 (497)
....+++.+.+..|..+ ..+.|.+.+++ +.....+ ....-.....++++|.. ..|+.... .+.|...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHRQVL-------VWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-STTCEEE-------ECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcEEEE-------EeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEE
Confidence 45678888766666554 67899999987 3322222 11223456899999965 45555543 5678888
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeec-cccc
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH-EHLR 368 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~-~~~~ 368 (497)
++...... ..... -...+.++++++++.|..++. +.|..+|+.. .. ...+... ..+
T Consensus 152 ~~dG~~~~----~l~~~--------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~-~~v~~~~l~~P- 210 (628)
T 4a0p_A 152 AMDGSERT----TLVPN--------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LN-REVIADDLPHP- 210 (628)
T ss_dssp ETTSCSCE----EEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CS-CEEEEECCSCE-
T ss_pred eCCCCceE----EEECC--------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cc-eEEeeccCCCc-
Confidence 77654321 11111 145789999998888877743 8899999863 22 2333221 111
Q ss_pred ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
..+++.. +...++-...+.|...|..+++..
T Consensus 211 ---------------~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 211 ---------------FGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp ---------------EEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred ---------------eEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 3677764 344445555788999997776543
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.24 E-value=0.097 Score=47.28 Aligned_cols=120 Identities=5% Similarity=-0.003 Sum_probs=69.0
Q ss_pred CCeeEEEeCCCCCEEEEE--c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCCeEEE
Q 010933 215 FNINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL 290 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v 290 (497)
.....+++.|.+..|..+ . .+.|...+++ +.....+ ....-.....++++|++ ..|+.+ +..+.|..
T Consensus 122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~-------~~~~l~~Pnglavd~~~-~~lY~aD~~~~~I~~ 192 (318)
T 3sov_A 122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFII-------INSEIYWPNGLTLDYEE-QKLYWADAKLNFIHK 192 (318)
T ss_dssp SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEE-------ECSSCSCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEE-------EECCCCCccEEEEeccC-CEEEEEECCCCEEEE
Confidence 356788898865555554 2 5788888877 3322222 11223456899999976 555554 45789999
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeee
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 362 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~ 362 (497)
+|+...... ..... .......+++.. +.++.+-.. +.|..++..+ ++....+.
T Consensus 193 ~d~dG~~~~----~~~~~-------------~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~-G~~~~~i~ 246 (318)
T 3sov_A 193 SNLDGTNRQ----AVVKG-------------SLPHPFALTLFE-DILYWTDWSTHSILACNKYT-GEGLREIH 246 (318)
T ss_dssp EETTSCSCE----EEECS-------------CCSCEEEEEEET-TEEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred EcCCCCceE----EEecC-------------CCCCceEEEEeC-CEEEEEecCCCeEEEEECCC-CCceEEEe
Confidence 998743211 11111 012345677653 333333323 8899999865 55554443
No 296
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.24 E-value=0.089 Score=52.06 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=25.4
Q ss_pred eCCCEEEEEe-cCeEEEEecCCCCceeeeeeeccc
Q 010933 333 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 333 ~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
..+.+++.++ ++.++.||.++ ++.+.+++....
T Consensus 482 tagg~vf~gt~dg~l~A~D~~t-G~~lW~~~l~~g 515 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSG 515 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred ecCCEEEEECCCCeEEEEECCC-CCEEEEeeCCCC
Confidence 3566676675 59999999997 899988876544
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.23 E-value=0.036 Score=53.04 Aligned_cols=117 Identities=16% Similarity=0.098 Sum_probs=68.3
Q ss_pred CeeEEEe-------CCCCCEEEEE--cCC------eEEEEeCccCceee-----EEeecCCCccCCCCCCeEEEEEeCCC
Q 010933 216 NINSISN-------NSDCETFVSA--DDL------RINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPIY 275 (497)
Q Consensus 216 ~v~~~~~-------~~~~~~l~~~--~d~------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~ 275 (497)
....++| +++|+.|+.+ .++ .|.+++....+... ..+ ... .....++++|++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v-------~~~-~~p~giavdp~~ 258 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI-------AAY-KQCNGATIHPIN 258 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE-------EEE-SCCCCEEECTTT
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee-------ccC-CCceEEEEcCCC
Confidence 5778999 9999966655 331 36666644212221 111 111 233577889955
Q ss_pred CcEEEEEeCCCeEEEEEcc-------CCcccc----c----ccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 276 CNLLAYSSSRGFVRLVDMR-------QSALCD----H----SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 276 ~~~l~~~~~dg~i~v~d~~-------~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
..++++-..++.|..+|+. ++.... . ....+.. +.......++|+|+|++|..
T Consensus 259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~------------~~~~~p~~ia~~p~G~~lYv 326 (496)
T 3kya_A 259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI------------ADPSWEFQIFIHPTGKYAYF 326 (496)
T ss_dssp CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC------------SSSSCCEEEEECTTSSEEEE
T ss_pred CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec------------CCCCCceEEEEcCCCCEEEE
Confidence 2666666678899999997 443200 0 0011111 01134578999999997666
Q ss_pred Ee-c-CeEEEEecC
Q 010933 341 RD-Y-MNLKLWDIR 352 (497)
Q Consensus 341 ~~-~-~~i~lwd~~ 352 (497)
++ . ..|+.++..
T Consensus 327 aD~~~h~I~kid~d 340 (496)
T 3kya_A 327 GVINNHYFMRSDYD 340 (496)
T ss_dssp EETTTTEEEEEEEE
T ss_pred EeCCCCEEEEEecC
Confidence 64 3 888887764
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.19 E-value=0.35 Score=51.86 Aligned_cols=37 Identities=5% Similarity=0.114 Sum_probs=27.8
Q ss_pred cceeEEEEEecCC----CCEEEEEeC-CccEEEeecCchhee
Q 010933 110 EKINRVRWCAAPN----GSMFILSTN-DKTIKLWKVRDQKVK 146 (497)
Q Consensus 110 ~~i~~l~~~~s~~----~~~l~s~s~-d~~i~iw~~~~~~~~ 146 (497)
..|.|+++.|.++ +.+++.|.. |++++|+++.+.+..
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~ 595 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL 595 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence 6699999864332 468888885 999999999864433
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.18 E-value=0.13 Score=46.86 Aligned_cols=154 Identities=10% Similarity=0.122 Sum_probs=86.9
Q ss_pred CeeEEEeCC--CCC--EEEEE-c--CCeEEEEeCccCceeeEEeecCCCccCC-CCCCeEEEEEeCCCCcEEEEEeC---
Q 010933 216 NINSISNNS--DCE--TFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSS--- 284 (497)
Q Consensus 216 ~v~~~~~~~--~~~--~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~--- 284 (497)
....+.+.+ +++ ++++- . +.+|.+|+++..+.....+. ++.+ .-.....+++.++| .+.++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ft 187 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFI 187 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCS
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeC
Confidence 445555543 343 44443 3 67888888774433322211 1111 23457899999998 76666531
Q ss_pred --------------CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEE
Q 010933 285 --------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKL 348 (497)
Q Consensus 285 --------------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~l 348 (497)
.|.|..+|. ++.. ..... -...+.++|+||++.|+.++ . +.|..
T Consensus 188 d~~~~~~e~~~~~~~g~vyr~d~--~~~~----~~~~~--------------l~~pNGia~spDg~~lYvadt~~~~I~~ 247 (355)
T 3sre_A 188 DPYLKSWEMHLGLAWSFVTYYSP--NDVR----VVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHV 247 (355)
T ss_dssp SHHHHHHHHHTTCCCEEEEEECT--TCCE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred CcccccchhhccCCccEEEEEEC--CeEE----EeecC--------------CcccCcceECCCCCEEEEEeCCCCeEEE
Confidence 244444444 2211 11111 13468999999999888874 3 89999
Q ss_pred EecCCCCcee--eeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCC-CcEEEEEcC
Q 010933 349 WDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYS-NLLRIFSHG 410 (497)
Q Consensus 349 wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~d-g~i~vw~~~ 410 (497)
|++..+++.. +.+.....+ -.+++.+ +|++.+++..+ +.|..|+.+
T Consensus 248 ~~~~~~g~l~~~~~~~~~g~P----------------DGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 248 YEKHANWTLTPLRVLSFDTLV----------------DNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEECTTSCEEEEEEEECSSEE----------------EEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEECCCCcEecCEEEeCCCCC----------------ceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 9997434321 122111111 3799999 59988877644 455555543
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.06 E-value=0.18 Score=46.23 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd 60 (497)
..-..++|.|+|+++++ ..+|.|++++
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence 45679999999985554 5679999998
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.99 E-value=0.0058 Score=62.03 Aligned_cols=121 Identities=7% Similarity=0.002 Sum_probs=66.6
Q ss_pred CeeEEEeCCCCCEEEEE--c-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933 216 NINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 292 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 292 (497)
....+++.|.+..|+.+ . .+.|..+++. +.....+ ....-.....|+|+|++..++++-+..+.|..+|
T Consensus 497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l-------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d 568 (699)
T 1n7d_A 497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 568 (699)
T ss_dssp CCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEE-------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred CcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEE-------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEc
Confidence 34567888865555544 3 3678887776 2222211 1112234578999998635555555678999999
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ec-CeEEEEecCCCCceeeeee
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIRMDSTPVATFK 362 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~-~~i~lwd~~~~~~~~~~~~ 362 (497)
+..... +.+.... ........|++.. ..|+.. .. +.|..++..+ ++.+..+.
T Consensus 569 ~dG~~~-----~~~~~~~----------~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~-G~~~~~i~ 622 (699)
T 1n7d_A 569 VNGGNR-----KTILEDE----------KRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLT-GSDVNLLA 622 (699)
T ss_dssp SSSSCC-----EEECCCS----------SSCSSCCCCEEET--TEEEEECSTTTCEEEEETTT-EEEEECCC
T ss_pred cCCCce-----EEEEecC----------CcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccC-CCceEEee
Confidence 864321 1111100 0012234555544 344444 33 8899998765 66665553
No 302
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.88 E-value=0.14 Score=47.39 Aligned_cols=126 Identities=12% Similarity=0.152 Sum_probs=78.9
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCccCce-----------eeEEeecCCCccCCCCCCeEEEEEeCCCC--cEEEEE
Q 010933 216 NINSISNNSDCETFVSADDLRINLWNLEISDQ-----------CFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYS 282 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~ 282 (497)
.|..+..+|+|++||...+..|.+-.+..... ....+.+.+.+ .....+|..+.|+|-+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence 56779999999999998788899988762210 11223333211 11367899999999752 489999
Q ss_pred eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c-CeEEEE
Q 010933 283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLW 349 (497)
Q Consensus 283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~lw 349 (497)
..|+.|++||+...... .. .+.. .. ..-.+......+.+++|.+++-.|...+ . |.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~--P~-~L~k-~~---~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEK--PI-VLNK-PN---NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSC--CE-EESC-CC---SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCC--Cc-chhc-cc---cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999999863211 11 2221 00 0001122335788999999876555533 4 777643
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.86 E-value=0.27 Score=45.05 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd 60 (497)
.....|+|.|+|++++ +..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe
Confidence 4567999999998555 46669999887
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.84 E-value=0.45 Score=47.32 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=92.1
Q ss_pred CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--CCeEEE
Q 010933 215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRL 290 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~v 290 (497)
.....+++.+.+..|+.+ ..+.|.+.+.+ +.....+ ....-.....++++|.+ ..|+.+.. .+.|..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l-------~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r 154 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIER 154 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEE-------EeCCCCCCceEEEecCC-CeEEEeccCCCCEEEE
Confidence 357789999866666555 78899999988 4332222 11223446789999976 45555543 467777
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeee--ccc
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKI--HEH 366 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~--~~~ 366 (497)
.++...... ..... .-...+.+++++++..|..++. +.|..+|+. +.....+.. ...
T Consensus 155 ~~~dG~~~~----~l~~~-------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~ 215 (619)
T 3s94_A 155 AGMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH 215 (619)
T ss_dssp EETTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC---------
T ss_pred EECCCCceE----EEEeC-------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEEEEeCCCCC
Confidence 776543211 11111 0134688999998777777743 788888885 433333211 111
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
+ .++++..+ ....+-...+.|...|..+++.
T Consensus 216 P----------------~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 216 P----------------FALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp C----------------CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred c----------------eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 1 36777655 3444444578899999877754
No 305
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.80 E-value=0.13 Score=45.86 Aligned_cols=137 Identities=7% Similarity=-0.047 Sum_probs=73.4
Q ss_pred EeCCCCCEEEEEc---CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEccCC
Q 010933 221 SNNSDCETFVSAD---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQS 296 (497)
Q Consensus 221 ~~~~~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~ 296 (497)
.++++++.|+... ++.-.||.+...+...+. +..+.. ..+++++ ..|+..+. ...|.+.++..+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~-------lt~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK-------IKNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE-------EESSCC----CCSEEET-TEEEEECTTTCCEEEEETTTT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE-------EeCCCc----eEeeEEC-CEEEEEeCCCceEEEEECCCC
Confidence 5677888887653 444444443322322222 112211 3467778 66666555 677888887665
Q ss_pred cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec---CeEEEEecCCCCceeeeeeecccccccccc
Q 010933 297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKLCD 373 (497)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (497)
... .+++. .. ...++|++.+|+-... ..|..-++. +.....+....
T Consensus 178 ~~~----~l~~~----------------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~~-------- 226 (302)
T 3s25_A 178 SEA----LFYDC----------------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEAN-------- 226 (302)
T ss_dssp EEE----EEECS----------------CE-EEEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCSC--------
T ss_pred CEE----EEeCC----------------Cc-cceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCCC--------
Confidence 421 22222 11 2346699998887642 345555554 44444443211
Q ss_pred cCCCCCccceeEEEEcCCCCEEEEEeC--CCcEEEEEcCC
Q 010933 374 LYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHGV 411 (497)
Q Consensus 374 ~~~~~~~~~~~~~~~s~~~~~l~s~~~--dg~i~vw~~~~ 411 (497)
...|+|++++|+-++. .+.|..-+++.
T Consensus 227 -----------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 227 -----------IEHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp -----------EEEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred -----------cceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 2458888888876543 34555556543
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.78 E-value=0.26 Score=43.79 Aligned_cols=169 Identities=5% Similarity=0.007 Sum_probs=93.6
Q ss_pred CCeeEEEeCCCCCEEEE-E---c----CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC--CCcEEEEEeC
Q 010933 215 FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSS 284 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~ 284 (497)
..|..-..+++.++++. | . .|.+.+|..+ . +..+. +++|.+....+.+..+ ...+|..+..
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r-~~sQ~-------ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-R-KVSQP-------IEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-T-TEEEE-------ECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec-c-cccce-------eeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 45666677888887764 2 2 3678899988 3 33333 5677665544433221 1134444433
Q ss_pred ---CCeEEEEEccCCc-ccccc-cceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCcee
Q 010933 285 ---RGFVRLVDMRQSA-LCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV 358 (497)
Q Consensus 285 ---dg~i~v~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~ 358 (497)
.+++++-++.... -.... .+..+. ...++ .-.+--.+|..|+.-..+..-+. |.+.+||+++ +.++
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi-~fppe------a~~DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i 294 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI 294 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEE-CCCTT------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred cCCCcEEEEEEcCCCCCCCCCccccccee-eCCcc------ccCCceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEE
Confidence 2588888884320 00000 011110 00000 01123456777876666666554 9999999998 8888
Q ss_pred eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 359 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
..-+.....+ | ..+-+.+..-++.....|.|.--.++....+
T Consensus 295 ~~nrIS~d~i------------F---~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 295 YMNRISGETI------------F---VTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEEECCSSCE------------E---EEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred EEeccCCCce------------E---EecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 8777666543 2 2233334444566667888877777765433
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.77 E-value=0.3 Score=44.16 Aligned_cols=130 Identities=9% Similarity=0.135 Sum_probs=76.6
Q ss_pred CeeEEEe--CCC-CC-EEEEE-cCCeEEEEeCccC------ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933 216 NINSISN--NSD-CE-TFVSA-DDLRINLWNLEIS------DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 284 (497)
Q Consensus 216 ~v~~~~~--~~~-~~-~l~~~-~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 284 (497)
.+..+++ +|. ++ +++.. .+|.+..|++... .+.+..+. ....+..+..++.. ..|+.+-+
T Consensus 129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--------lgsq~EgcvvDd~~-g~Lyv~eE 199 (355)
T 3amr_A 129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--------MNSQTEGMAADDEY-GRLYIAEE 199 (355)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--------CSSCEEEEEEETTT-TEEEEEET
T ss_pred CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--------CCCCcceEEEcCCC-CeEEEecc
Confidence 4455666 664 44 34445 8899999988421 12233321 23467889999887 89999999
Q ss_pred CCeEEEEEccCCccc-ccccceecccccccCCccccccccccccEEEEe--eCCC-EEEEEe--cCeEEEEecCCCCcee
Q 010933 285 RGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFA--NDGQ-HLLSRD--YMNLKLWDIRMDSTPV 358 (497)
Q Consensus 285 dg~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~g~-~l~~~~--~~~i~lwd~~~~~~~~ 358 (497)
+.-|..+|.+..... .+.+..+.. ......+..|++- ++++ ||++++ ++...+||.+...+.+
T Consensus 200 d~GIw~~da~p~~~~~~~~v~~~~~-----------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 200 DEAIWKFSAEPDGGSNGTVIDRADG-----------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTEEEEEECSTTSCSCCEEEEEBSS-----------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred cceEEEEeCCcCCCCCceEEEEecC-----------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 877777775522100 000111111 0011346777774 5555 666654 3899999997436777
Q ss_pred eeeeecc
Q 010933 359 ATFKIHE 365 (497)
Q Consensus 359 ~~~~~~~ 365 (497)
..+....
T Consensus 269 g~f~Ig~ 275 (355)
T 3amr_A 269 ADFRITD 275 (355)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 7775443
No 308
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.73 E-value=0.44 Score=45.57 Aligned_cols=160 Identities=9% Similarity=0.047 Sum_probs=90.8
Q ss_pred CeeEEEeCC-CCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE-------eCCCCcEEEEEeCC
Q 010933 216 NINSISNNS-DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF-------HPIYCNLLAYSSSR 285 (497)
Q Consensus 216 ~v~~~~~~~-~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~l~~~~~d 285 (497)
....|+|.| ++..|..+ ..+.|++.|.. .+....+... -.........++| ++++ ..|+++...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~-~~~v~~l~~~----~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK-NRMLSSPLNI----NTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETT-TTEEEEEECC----TTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECC-CCEEEEEEcc----CccccCCCcEEEEeecccccCCCC-CEEEEEeCC
Confidence 467899998 35555554 45788888888 4544444211 1112345799999 9999 756666554
Q ss_pred C-------eEEEEEccC-Ccccc-cccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecC--
Q 010933 286 G-------FVRLVDMRQ-SALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIR-- 352 (497)
Q Consensus 286 g-------~i~v~d~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~-- 352 (497)
+ .|.+++... +.... .....+.. -.....++++|++..|+.+. .+.|..+|+.
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--------------~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~ 279 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAA--------------YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDY 279 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE--------------ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred CCCcccCceEEEEecCCCCceeecccceeecc--------------CCCceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence 3 255665333 22210 00011111 12357889999655555543 3889999986
Q ss_pred -----CCCce-----------eeee-eecccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcC
Q 010933 353 -----MDSTP-----------VATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHG 410 (497)
Q Consensus 353 -----~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~ 410 (497)
+ +.. ...+ ...... . -+.++|+|+|++|+.+ ...++|+.++..
T Consensus 280 ~~~~~t-g~~~tp~~~~~~g~~~~l~~~~~~~-----------~---p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 280 FKTIKN-GGSWDPIVKNNPNTFKQLFTIADPS-----------W---EFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHT-TCCCCCBGGGCTTTEEEEEECSSSS-----------C---CEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccC-ceeecccccccccccceeEecCCCC-----------C---ceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 3 322 1121 111111 0 1589999999965544 557788887654
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.61 E-value=0.45 Score=44.19 Aligned_cols=169 Identities=5% Similarity=0.008 Sum_probs=97.1
Q ss_pred CCeeEEEeCCCCCEEEE-E---c----CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC--CcEEEEEeC
Q 010933 215 FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CNLLAYSSS 284 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~ 284 (497)
..|..-..+++.++++. | . .|.+.+|..+ ++..+. +++|.+....+....+. ..++..+..
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e--r~~sQ~-------ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD--RKVSQP-------IEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST--TCCEEE-------ECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc--ccccch-------heeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 45666777888888764 2 2 4678899988 233333 67777665555443221 134555544
Q ss_pred C---CeEEEEEccCCc-ccccc-cceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCcee
Q 010933 285 R---GFVRLVDMRQSA-LCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV 358 (497)
Q Consensus 285 d---g~i~v~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~ 358 (497)
. ++++|.++.... -.... .+..+. ...++ .-.+--.+|..|+.-..+..-+. |.+.+||+.+ +.++
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv-~fppe------~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i 293 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI 293 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEEC-CCCTT------STTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeee-eCCcc------cccCceeEEEecccCCEEEEEecCceEEEEeccc-ceee
Confidence 3 789998885420 00000 011111 00000 01123457788877666666555 9999999998 8888
Q ss_pred eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 359 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
..-+.....+ | -.+-+....-++.....|.|.--.++....+
T Consensus 294 ~~nrIs~~~i------------F---~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 294 YMNRISGETI------------F---VTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEEECCSSCE------------E---EEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred eeecccCCce------------E---EecccCCCCcEEEEccCceEEEEEEccccch
Confidence 7777665543 2 2333344445666668888877777765443
No 310
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.57 E-value=0.47 Score=43.95 Aligned_cols=82 Identities=7% Similarity=-0.017 Sum_probs=56.3
Q ss_pred cccEEEEeeCCCEEEEEecCeEEEEecCCCCcee-----------eeeeecccccccccccCCCCCccceeEEEEcCC--
Q 010933 325 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV-----------ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-- 391 (497)
Q Consensus 325 ~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-- 391 (497)
.+..+..+|+|++||..++..|.|-.+..+.... +.+...... ...-..|..+.|+|-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~---------~~~~s~I~qVlWHPl~~ 137 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE---------VGPKSSIKKVLFHPKSY 137 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC-----------CCCCEEEEEECTTBG
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc---------cCCCCceeEEEeccccC
Confidence 5788999999999999988999999987321111 112211100 000112469999995
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 392 -GLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 392 -~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
+..|++-..|+.|++||+......
T Consensus 138 ~ds~LVVLtsD~~Ir~yDl~~s~~~ 162 (452)
T 3pbp_A 138 RDSCIVVLKEDDTITMFDILNSQEK 162 (452)
T ss_dssp GGCEEEEEETTSCEEEEETTCTTSC
T ss_pred CCCeEEEEecCCEEEEEEcccCCCC
Confidence 568999999999999999975443
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.51 E-value=0.41 Score=42.55 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=16.1
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCC
Q 010933 391 DGLHFATGSYS-----NLLRIFSHGVG 412 (497)
Q Consensus 391 ~~~~l~s~~~d-----g~i~vw~~~~~ 412 (497)
++++++.|+.+ ..+.+||.++.
T Consensus 253 ~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 253 RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 67777777765 35788888765
No 312
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.48 E-value=0.8 Score=45.54 Aligned_cols=205 Identities=9% Similarity=-0.037 Sum_probs=102.3
Q ss_pred CCcceEEEEEcCCCCEEEEee-cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.......++|++.+..|.... ..+.|..++.++... ....+..--
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~----------------------~~~v~~~~~------------ 83 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES----------------------VQNVVVSGL------------ 83 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------------CEEEECSSC------------
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc----------------------eEEEEeCCC------------
Confidence 345678999999776666555 457888888765311 011111111
Q ss_pred cceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.....|++ ++.++.|+.+ ...+.|.+.++++.....+....... ...+...+..+.+..+ ....
T Consensus 84 ~~P~GlAv--D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~-P~~Iavdp~~g~ly~t------------D~g~ 148 (619)
T 3s94_A 84 LSPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ-PRAIALDPSSGFMYWT------------DWGE 148 (619)
T ss_dssp SCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC-CCCEEEETTTTEEEEE------------ECSS
T ss_pred CCcCeEEE--EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCC-CceEEEecCCCeEEEe------------ccCC
Confidence 34678888 5545555544 57789999998765433322111110 0111111111111111 1111
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
.+.|...+++.. ....+....-...+.+++.+++..|..+ ..+.|..+|++ +.....+ ..+.....
T Consensus 149 ~~~I~r~~~dG~----~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d-G~~~~~~-------~~~~~~~P 216 (619)
T 3s94_A 149 VPKIERAGMDGS----SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAV-------VKGSLPHP 216 (619)
T ss_dssp SCEEEEEETTSC----SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS-CCEEC----------------C
T ss_pred CCEEEEEECCCC----ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC-CCccEEE-------EeCCCCCc
Confidence 122222233221 1111212334467889999977777766 67889888887 3333222 11111223
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcc
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 298 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 298 (497)
..+++..+ .++.+-...+.|...|..+++.
T Consensus 217 ~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 217 FALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp CCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred eEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 46666654 4444445578899999877653
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.44 E-value=0.46 Score=42.29 Aligned_cols=129 Identities=11% Similarity=0.116 Sum_probs=89.6
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 347 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~ 347 (497)
+.-.+|.. +.+|.-. ...+.++|+++...+ +.+.. ...|.-=.|-. .+.|+--++..|+
T Consensus 71 sAIMnP~~-~ViALra-g~~LQiFnletK~kl----ks~~~--------------~e~VvfWkWis-~~~L~lVT~taVy 129 (365)
T 2xzh_A 71 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM--------------TDDVTFWKWIS-LNTVALVTDNAVY 129 (365)
T ss_dssp EEEECSSS-SEEEEEE-TTEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECS-SSEEEEEESSEEE
T ss_pred eeeeCCCc-cEEEEec-CCeEEEechHHhhhh----cceec--------------CCccEEEEecC-CCeEEEEcCCcEE
Confidence 44568887 7777665 789999999987544 33332 13465666653 4566666778999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCCcceEEEe
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-------SNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-------dg~i~vw~~~~~~~~~~~~~ 420 (497)
-|++..+..+.+.+..|.... ...|.....+++.++++..|- .|.+.+|.++. ...+.++
T Consensus 130 HWs~~~~s~P~kvFdR~~~L~-----------~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~ie 196 (365)
T 2xzh_A 130 HWSMEGESQPVKMFDRHSSLA-----------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIE 196 (365)
T ss_dssp EEESSTTCCCEEEEECCGGGT-----------TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT--TEEEEEC
T ss_pred EEcccCCCCCceeeecchhcc-----------cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc--cccceee
Confidence 999986678888888887652 122357888899998775442 47899999985 4568889
Q ss_pred ccCcceeeeE
Q 010933 421 AGKNENRKPI 430 (497)
Q Consensus 421 ~~~~~v~~~~ 430 (497)
+|...-....
T Consensus 197 Ghaa~F~~~~ 206 (365)
T 2xzh_A 197 GHAASFAQFK 206 (365)
T ss_dssp CSEEEEEEEC
T ss_pred eeeeeeEEEe
Confidence 9876554333
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.39 E-value=0.11 Score=47.80 Aligned_cols=114 Identities=13% Similarity=0.038 Sum_probs=62.5
Q ss_pred CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC---CCcEEEEEeC---C--
Q 010933 214 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS---R-- 285 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~---d-- 285 (497)
-.....++|.|+|+++++-.++.|++++.. +. ..+..++ ...........++++|+ +..+.++-+. +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~--G~-~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISPS--GK-KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECSS--CE-EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeCC--Cc-eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 345789999999986666666999999743 33 2121111 11222456789999997 4144443332 3
Q ss_pred --CeEEEEEccCCcc-cccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 286 --GFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 286 --g~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
..|..|+...... ......++..-.. -..| ....++|.|||.++++-
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~-------~~~h--~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPG-------AYIH--NGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEEC-------CSSC--CCCCEEECTTSCEEEEC
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCC-------CCCc--CCceEEECCCCcEEEEE
Confidence 5677777664310 1000011111000 0112 34679999999877763
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.97 E-value=0.51 Score=44.89 Aligned_cols=116 Identities=12% Similarity=0.124 Sum_probs=62.8
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC--CCCCCeEEEEEeCC---CCcEEEEEeC----
Q 010933 215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPI---YCNLLAYSSS---- 284 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~---~~~~l~~~~~---- 284 (497)
...+.|+|.|+|+++++- ..+.|++++.. .+....+..+.. .+. ........|+|+|+ + ..|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~s~~~~ 103 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPE-IVNDADGQNGLLGFAFHPDFKNN-PYIYISGTFKNP 103 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTT-CCCCTTSSCSEEEEEECTTTTTS-CEEEEEEEEECT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCc-cccccCCCCceeEEEECCCcCcC-CEEEEEEecccc
Confidence 456799999999988887 44579888765 233222222211 111 13567789999995 3 34444332
Q ss_pred ---------CCeEEEEEccCCcc-cccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933 285 ---------RGFVRLVDMRQSAL-CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 342 (497)
Q Consensus 285 ---------dg~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 342 (497)
...|.-+++..+.. +.....++..... -.. .....|+|.|||.+.++..
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-------~~~--H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-------SKD--HQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-------CSS--CCEEEEEECTTSCEEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-------CCC--CCCCeEeECCCCeEEEEEC
Confidence 23555565543211 1111112221000 011 2468899999998777643
No 316
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.97 E-value=1.5 Score=43.72 Aligned_cols=200 Identities=13% Similarity=-0.023 Sum_probs=104.7
Q ss_pred CcceEEEEEcCCCCEEEEe-ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
-..+..++|++.+..|... ..++.|..+++++... + ..+..-. .
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~---------------------~--~v~~~g~------------~ 80 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL---------------------E--HVVEFGL------------D 80 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------------------E--EEECSSC------------S
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc---------------------E--EEEeCCC------------C
Confidence 3467899999976666544 4678888888765422 1 1111111 2
Q ss_pred ceeEEEEEecCCCCEEE-EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 111 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
....|++ +..+..|+ +-...+.|.+.++++.....+....... ...+...+..|.+..+ .....
T Consensus 81 ~P~GlAv--D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~-P~~iavdp~~G~lY~t------------D~g~~ 145 (628)
T 4a0p_A 81 YPEGMAV--DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS-PRALALDPAEGFMYWT------------EWGGK 145 (628)
T ss_dssp CCCEEEE--ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCC-EEEEEEETTTTEEEEE------------ECSSS
T ss_pred CcceEEE--EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCC-cccEEEccCCCeEEEe------------CCCCC
Confidence 3566777 44444444 4456788898888765433322111110 1111111111211111 11112
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
+.|...+++... ...+ ...-.....+++.++++.|..+ ..+.|..+|+..... +++ ........
T Consensus 146 ~~I~r~~~dG~~----~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~-------~~~l~~P~ 211 (628)
T 4a0p_A 146 PKIDRAAMDGSE----RTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVI-------ADDLPHPF 211 (628)
T ss_dssp CEEEEEETTSCS----CEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEE-------EECCSCEE
T ss_pred CEEEEEeCCCCc----eEEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEe-------eccCCCce
Confidence 233333333221 1222 1234467889999987777776 678999999873222 332 11223446
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCc
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSA 297 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 297 (497)
.+++.. + .++++-...+.|...|..+++
T Consensus 212 glav~~-~-~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 212 GLTQYQ-D-YIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEC-C-EEEEecCCCCEEEEEECCCCC
Confidence 777765 3 555555557888888866553
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.85 E-value=1.1 Score=41.07 Aligned_cols=30 Identities=7% Similarity=0.353 Sum_probs=21.7
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 141 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~ 141 (497)
.....|+| .|+++.|+.+...|.|++++..
T Consensus 18 ~~P~~i~~--~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAF--LPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEE--CSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEE--cCCCCEEEEEeCCceEEEEeCC
Confidence 44678999 6888745566677888888743
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.84 E-value=1.1 Score=41.06 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEec
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV 62 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~ 62 (497)
.....|+|.|+|++|.++...|.|++++.+
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 355799999999934445667999999853
No 319
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.71 E-value=0.8 Score=49.30 Aligned_cols=155 Identities=8% Similarity=0.125 Sum_probs=82.1
Q ss_pred cceEEEeecCCccceeeeeeccCC----CCCeeEEEeCCCCCEEEE-E-------cCCeEEEEeCccCceeeEEeecCCC
Q 010933 190 MATKIANVGNSVHARCQKVYPHAH----DFNINSISNNSDCETFVS-A-------DDLRINLWNLEISDQCFNIVDMKPS 257 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~-~-------~d~~i~iwd~~~~~~~~~~~~~~~~ 257 (497)
..+.-|++.. ...|++.| ..| ...|..-..+++.++++. | -.|.+.+|..+ . +..+.
T Consensus 125 ~aVyHW~~~~--~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r-~~sQ~------ 193 (1630)
T 1xi4_A 125 NAVYHWSMEG--ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-R-KVSQP------ 193 (1630)
T ss_pred CeEEEeccCC--CCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-c-ccchh------
Confidence 3455555543 22344443 333 345666777888888764 2 24788899887 2 22222
Q ss_pred ccCCCCCCeEEEEEe--CCCCcEEEEEeC---CCeEEEEEccCC---c--ccccccceecccccccCCcccccccccccc
Q 010933 258 NMDDLTEVITSAEFH--PIYCNLLAYSSS---RGFVRLVDMRQS---A--LCDHSARILRDAAESHGSKSFFTEIIASIS 327 (497)
Q Consensus 258 ~~~~~~~~i~~~~~~--~~~~~~l~~~~~---dg~i~v~d~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 327 (497)
++||.+....+... +..+.++..+.. .+.++|-++... . ...+...++-. ++ .-.+-..
T Consensus 194 -iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~----~~------~~~Dfpv 262 (1630)
T 1xi4_A 194 -IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP----PE------AQNDFPV 262 (1630)
T ss_pred -hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC----cc------cccCcce
Confidence 56676655444443 111133333332 368888888542 1 00000011100 00 0012235
Q ss_pred EEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccc
Q 010933 328 DIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHL 367 (497)
Q Consensus 328 ~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~ 367 (497)
+|..++.-..+..-+ .|-+.+||+.+ +.++..-+.....
T Consensus 263 ~~~vs~k~g~iy~itk~G~~~~~d~~t-~~~i~~~ris~~~ 302 (1630)
T 1xi4_A 263 AMQISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGET 302 (1630)
T ss_pred EEEeccccCEEEEEecCceEEEEeccc-chhhhhccccCCc
Confidence 667777655555554 49999999998 8877666555543
No 320
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.69 E-value=0.23 Score=41.45 Aligned_cols=113 Identities=10% Similarity=-0.147 Sum_probs=63.5
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecC
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYM 344 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 344 (497)
.+..++|+|+| .+.++ .+|.++-.+..+... ..+-.....-. -.+ -....++.|.|+|.+.++ +||
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~t~IG----~~G-w~~F~a~~fD~~G~LYav-~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMGRAKKIG----NGG-WNQFQFLFFDPNGYLYAV-SKD 107 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHHHCEEEE----CSC-GGGCSEEEECTTSCEEEE-ETT
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccccccEec----ccc-cccceEEEECCCCCEEEe-CCC
Confidence 56799999998 66555 778777777654221 11111000000 000 012588999999988888 779
Q ss_pred eEEEEecCCCCceee----eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933 345 NLKLWDIRMDSTPVA----TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 406 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v 406 (497)
.|+-++-.+.+.--. ..-+..... ++..+.|.|+|.+.+.. |+.++-
T Consensus 108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~-------------~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 108 KLYKASPPQSDTDNWIARATEVGSGGWS-------------GFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp EEEEESCCCSTTCCHHHHSEEEECSSGG-------------GEEEEEECTTSCEEEEE--TTEEEE
T ss_pred EEEEeCCCcCCCCceeccccEeccCCCC-------------ceEEEEECCCceEEEEe--CCcEEe
Confidence 888777533222111 010111110 12579999999877766 777543
No 321
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.63 E-value=1.1 Score=39.79 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=77.2
Q ss_pred CCCCEEEEE---cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC--------------C
Q 010933 224 SDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------------G 286 (497)
Q Consensus 224 ~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------------g 286 (497)
.++..|..+ .++.|+..+.+ +....++. . . .+--+++++ ..|+.+... .
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~--------~--~--~~~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~~ 88 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKLS--------N--D--TAMYINADK-NYVYYVRNNNQKITSQTFFSYDRN 88 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT-SCSCEEEE--------E--E--EEEEEEECS-SEEEEEEECC------CCSSCCSE
T ss_pred EeCCEEEEEeCCCCceEEEEcCC-CCCCEEcc--------C--C--ceeeEEEcC-CEEEEEECCCCcccccceeccCCC
Confidence 456666664 36666666665 33333321 1 1 233467888 777766543 3
Q ss_pred eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe---cCeEEEEecCCCCceeeeeee
Q 010933 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIRMDSTPVATFKI 363 (497)
Q Consensus 287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~~~i~lwd~~~~~~~~~~~~~ 363 (497)
.|+..++..++. ..+.. -.+..|++++++|+-.. ++.-.||.+..++...+.+..
T Consensus 89 ~Iy~i~~dg~~~-----~~l~~-----------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~ 146 (302)
T 3s25_A 89 SLCRIKRNGHGS-----TVLDP-----------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN 146 (302)
T ss_dssp EEEEEETTSCCC-----EEEEC-----------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES
T ss_pred eEEEEeCCCCcc-----eEeec-----------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC
Confidence 567777765532 11211 13347888999988765 444455544444555555544
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCC
Q 010933 364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGS 413 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~ 413 (497)
+.. ..|+++++.|+-.+. ...|++-++..+.
T Consensus 147 ~~~-------------------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 147 HYL-------------------FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp SCC-------------------CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred CCc-------------------eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 322 335677888876655 6778888876653
No 322
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.58 E-value=0.32 Score=40.56 Aligned_cols=113 Identities=12% Similarity=-0.050 Sum_probs=64.4
Q ss_pred CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCce-----eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933 215 FNINSISNNSDCETFVSADDLRINLWNLEISDQ-----CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 289 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 289 (497)
..+..++|+|+|.+.+. .+|.++-.+..+... ....+- -.+-.. ..++.|+|+| .+.++ .||.|+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG-----~~Gw~~-F~a~~fD~~G-~LYav--~dG~iy 110 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIG-----NGGWNQ-FQFLFFDPNG-YLYAV--SKDKLY 110 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEE-----CSCGGG-CSEEEECTTS-CEEEE--ETTEEE
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEec-----cccccc-ceEEEECCCC-CEEEe--CCCEEE
Confidence 36779999999986666 788776666542110 000000 001111 4788999999 66665 669998
Q ss_pred EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEE
Q 010933 290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 348 (497)
Q Consensus 290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~l 348 (497)
-++-.+... ..+...... .-..-=..+..+.+.|+|.+.++. ++.++-
T Consensus 111 r~~pP~~~~-----~~Wl~~a~~-----vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 111 KASPPQSDT-----DNWIARATE-----VGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp EESCCCSTT-----CCHHHHSEE-----EECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred EeCCCcCCC-----CceeccccE-----eccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 887643211 111110000 000001357899999999988888 877543
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.57 E-value=1.2 Score=39.57 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=16.2
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCC
Q 010933 391 DGLHFATGSYSN-----LLRIFSHGVG 412 (497)
Q Consensus 391 ~~~~l~s~~~dg-----~i~vw~~~~~ 412 (497)
++++++.|+.++ .+.+||..+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 677777887654 4888888765
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.36 E-value=1.6 Score=39.66 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=65.2
Q ss_pred CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC----CCcEEEEEe--CCC
Q 010933 214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI----YCNLLAYSS--SRG 286 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~--~dg 286 (497)
-...+.|+|.|+|+++++- ..|.|++++.. .+....+..+ +............++++|+ + .+.++-+ .++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~-~g~~~~v~~~-~~v~~~g~~GllGia~~Pdf~~~g-~lYv~yt~~~~~ 107 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAK-TGRKTELGEV-PGVSPSGEGGLLGIALSPDYASDH-MVYAYFTSASDN 107 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEEC-TTCCCBTTBSEEEEEECTTHHHHC-EEEEEEECSSSE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECC-CCcEeeeccc-CceeecCCCCceeeEeccccccCC-EEEEEEecCCCC
Confidence 4567899999999988888 59999999865 3332222111 1112334567899999995 4 3333322 345
Q ss_pred eEEEEEccCCc----ccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 287 FVRLVDMRQSA----LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 287 ~i~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
.|.-|.+..+. .......++..-.. -..| ....|.|.|||.+.++
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-------~~~H--~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPK-------GVIH--NGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECC-------CSSC--CCCCEEECTTSCEEEE
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCC-------CCCc--cCccccCCCCCCEEEE
Confidence 66666665421 11111122221000 0112 3567999999987776
No 325
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.26 E-value=1.5 Score=38.92 Aligned_cols=23 Identities=0% Similarity=0.189 Sum_probs=17.0
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCC
Q 010933 391 DGLHFATGSYS-----NLLRIFSHGVGS 413 (497)
Q Consensus 391 ~~~~l~s~~~d-----g~i~vw~~~~~~ 413 (497)
++++++.|+.+ ..+.+||..+.+
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 67788888854 468888887753
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.25 E-value=1.9 Score=40.07 Aligned_cols=130 Identities=11% Similarity=0.121 Sum_probs=90.7
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 347 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~ 347 (497)
+.-.+|.. +.+|.-. ...+.++|+++...+ +.+.. ...|.-=.|-.+ +.|+--++..|+
T Consensus 70 sAIMnP~~-~iiALra-g~~lQiFnle~K~kl----ks~~~--------------~e~VvfWkWis~-~~l~lVT~taVy 128 (494)
T 1bpo_A 70 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM--------------TDDVTFWKWISL-NTVALVTDNAVY 128 (494)
T ss_dssp EEEECSSS-SCEEEEE-TTEEEEEETTTTEEE----EEEEC--------------SSCCCEEEEEET-TEEEEECSSEEE
T ss_pred eeeeCCCC-cEEEEec-CCeEEEEchHHhhhh----cceec--------------CCCceEEEecCC-CeEEEEcCCeeE
Confidence 45678887 7666655 789999999987544 33332 134666667643 466666779999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCCcceEEEe
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-------YSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg~i~vw~~~~~~~~~~~~~ 420 (497)
-|++..+..+.+.+..|.... ...|.....+++.++++..| -.|.+.+|.++.+ ..+.++
T Consensus 129 HWsi~~~s~P~kvFdR~~~L~-----------~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ie 195 (494)
T 1bpo_A 129 HWSMEGESQPVKMFDRHSSLA-----------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIE 195 (494)
T ss_dssp EEESSSSCCCEEEEECCGGGT-----------TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEEC
T ss_pred EecccCCCCchhheecchhcc-----------cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchhe
Confidence 999976567888888877652 12235788899999887444 2578999999854 568889
Q ss_pred ccCcceeeeEe
Q 010933 421 AGKNENRKPIL 431 (497)
Q Consensus 421 ~~~~~v~~~~~ 431 (497)
+|...-..+.+
T Consensus 196 Ghaa~F~~~~~ 206 (494)
T 1bpo_A 196 GHAASFAQFKM 206 (494)
T ss_dssp CSEEEEEEEEC
T ss_pred eeeeeeEEEec
Confidence 98765544443
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.75 E-value=2.9 Score=39.64 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=23.3
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCC
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~ 64 (497)
.....|+|.|+|+++++-...+.|++++..++
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 45679999999997776544457888876544
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.29 E-value=4.1 Score=36.02 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=16.3
Q ss_pred CCCEEEEeecC----CeEEEEEecCCc
Q 010933 43 TGDYLAVGDRG----GRVILFETVGGK 65 (497)
Q Consensus 43 ~g~~lasg~~d----g~i~iwd~~~~~ 65 (497)
++.+++.|+.+ ..+.+||..+.+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 56777888754 578888877653
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.27 E-value=4.2 Score=36.06 Aligned_cols=22 Identities=14% Similarity=0.428 Sum_probs=15.5
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCC
Q 010933 391 DGLHFATGSYS-----NLLRIFSHGVG 412 (497)
Q Consensus 391 ~~~~l~s~~~d-----g~i~vw~~~~~ 412 (497)
++++++.|+.+ ..+.+||..+.
T Consensus 262 ~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 262 QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 67777777754 35778888765
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.44 E-value=6.1 Score=35.82 Aligned_cols=28 Identities=4% Similarity=-0.073 Sum_probs=17.7
Q ss_pred EcCCCCEEEEEeCCC------cEEEEEcCCCCcc
Q 010933 388 VSGDGLHFATGSYSN------LLRIFSHGVGSAG 415 (497)
Q Consensus 388 ~s~~~~~l~s~~~dg------~i~vw~~~~~~~~ 415 (497)
...++++++.|+.++ .+.++++++++..
T Consensus 313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 334778888888653 3666688877554
No 331
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.38 E-value=6.2 Score=35.73 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=25.6
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCC
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~ 64 (497)
-..-..|+|.|||.++++-...|.|++++..++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 346689999999997776655899999876554
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.87 E-value=3.8 Score=44.41 Aligned_cols=130 Identities=11% Similarity=0.120 Sum_probs=84.9
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 347 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~ 347 (497)
+...+|.. +.+|.-. ...+.|+|+.+...+ +.+.. ...|.-=.|-. .+.|+--++..|+
T Consensus 70 sAIMnP~~-~iiALra-g~~lQiFnl~~k~kl----ks~~~--------------~e~VvfWkWis-~~~l~lVT~~aVy 128 (1630)
T 1xi4_A 70 SAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTM--------------TDDVTFWKWIS-LNTVALVTDNAVY 128 (1630)
T ss_pred hhccCCCc-ceEEEec-CCeEEEeehHHhhhh----ccccc--------------CCCceEEEecC-CCeeEEEcCCeEE
Confidence 44567876 6666554 789999999886544 32222 13455556653 3456555678999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-------CCCcEEEEEcCCCCcceEEEe
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-------YSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-------~dg~i~vw~~~~~~~~~~~~~ 420 (497)
-|++..+..+.+.+..|.... ...|..-..+++.++++..| -.|.+.+|+++.+ +.+.++
T Consensus 129 HW~~~~~s~P~k~fdR~~~L~-----------~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~ie 195 (1630)
T 1xi4_A 129 HWSMEGESQPVKMFDRHSSLA-----------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIE 195 (1630)
T ss_pred EeccCCCCccHHHHhcchhcc-----------cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cchhhh
Confidence 999975567777777665542 12235778888988877444 3588999998854 457788
Q ss_pred ccCcceeeeEe
Q 010933 421 AGKNENRKPIL 431 (497)
Q Consensus 421 ~~~~~v~~~~~ 431 (497)
||...-.....
T Consensus 196 gha~~F~~~~~ 206 (1630)
T 1xi4_A 196 GHAASFAQFKM 206 (1630)
T ss_pred HhHhhhheecc
Confidence 88665544333
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=91.68 E-value=6.8 Score=34.75 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=15.7
Q ss_pred CCCcEEEEEeC-C-----CeEEEEEccCCc
Q 010933 274 IYCNLLAYSSS-R-----GFVRLVDMRQSA 297 (497)
Q Consensus 274 ~~~~~l~~~~~-d-----g~i~v~d~~~~~ 297 (497)
++ .+++.|+. + ..+.+||..+.+
T Consensus 148 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 148 MD-LVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TT-EEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CC-EEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 44 67777776 2 468889987653
No 334
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=91.46 E-value=6.9 Score=34.37 Aligned_cols=64 Identities=8% Similarity=0.082 Sum_probs=33.7
Q ss_pred CCCEEEEE-cC-----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-----CeEEEEEc
Q 010933 225 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 293 (497)
Q Consensus 225 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~v~d~ 293 (497)
++++++.| .+ ..+.+||.. ...-..+-. +...... .+++.. ++ .+++.|+.+ ..+.+||+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~-~~~W~~~~~-----~p~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPH-TGHWTNVTP-----MATKRSG-AGVALL-ND-HIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETT-TTEEEEECC-----CSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCC-CCcEEeCCC-----CCccccc-ceEEEE-CC-EEEEEeCCCCCcccceEEEEeC
Confidence 56666665 43 468888887 333222211 1111111 122222 45 777777764 46889998
Q ss_pred cCCc
Q 010933 294 RQSA 297 (497)
Q Consensus 294 ~~~~ 297 (497)
.+.+
T Consensus 230 ~~~~ 233 (301)
T 2vpj_A 230 RTDS 233 (301)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8753
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=91.26 E-value=5.8 Score=35.76 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.2
Q ss_pred CEEEEeecCCeEEEEEecCCcc
Q 010933 45 DYLAVGDRGGRVILFETVGGKN 66 (497)
Q Consensus 45 ~~lasg~~dg~i~iwd~~~~~~ 66 (497)
.+++.++.||.|.-+|.++|+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~ 32 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI 32 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE
Confidence 4678888999999999888865
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=89.71 E-value=10 Score=33.46 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=33.4
Q ss_pred CCCEEEEE-cC-----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-----CeEEEEEc
Q 010933 225 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 293 (497)
Q Consensus 225 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~v~d~ 293 (497)
++++++.| .+ ..+.+||.. ...-... . .+.........+.+ ++ .+++.|+.+ ..+.+||+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~-~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPE-RNEWRMI-T----AMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETT-TTEEEEC-C----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCC-CCeEeeC-C----CCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence 45566665 33 468888887 3322221 1 11111111122222 45 777777664 56889998
Q ss_pred cCCc
Q 010933 294 RQSA 297 (497)
Q Consensus 294 ~~~~ 297 (497)
.+.+
T Consensus 239 ~~~~ 242 (308)
T 1zgk_A 239 ETET 242 (308)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8753
No 337
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=89.35 E-value=7.3 Score=34.24 Aligned_cols=64 Identities=9% Similarity=0.083 Sum_probs=33.6
Q ss_pred CCCEEEEE-cC-----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC-----eEEEEEc
Q 010933 225 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDM 293 (497)
Q Consensus 225 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~v~d~ 293 (497)
++++++.| .+ ..+.+||.. ...-..+-. +...... .+++.. ++ .+++.|+.++ .+.+||+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~-----~~~~r~~-~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPT-TNAWRQVAD-----MNMCRRN-AGVCAV-NG-LLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETT-TTEEEEECC-----CSSCCBS-CEEEEE-TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCC-CCCEeeCCC-----CCCcccc-CeEEEE-CC-EEEEECCcCCCcccccEEEEcC
Confidence 45666665 43 468889987 333222211 1111111 122222 45 7777777653 4888998
Q ss_pred cCCc
Q 010933 294 RQSA 297 (497)
Q Consensus 294 ~~~~ 297 (497)
.+.+
T Consensus 275 ~~~~ 278 (302)
T 2xn4_A 275 TTDK 278 (302)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7653
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.22 E-value=21 Score=36.36 Aligned_cols=172 Identities=10% Similarity=-0.039 Sum_probs=88.8
Q ss_pred CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCc-eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933 215 FNINSISNNSDCETFVSADDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 293 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~ 293 (497)
..|.++.-..+|.+.+...+| +..++..... .....+........-....|.++.-+++| . |-.|+ ++-|..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~-lWigt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-Q-LWIAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-C-EEEEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-C-EEEEe-CCcHhhcCc
Confidence 457888878888776655544 6666654211 11111110000001123568888888887 5 44455 457899998
Q ss_pred cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCC----CCcee---eeeeeccc
Q 010933 294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM----DSTPV---ATFKIHEH 366 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~----~~~~~---~~~~~~~~ 366 (497)
.+++.. .+.. ...... .....|.++...++|++.+....+-+.++|... ..... ..+.....
T Consensus 400 ~~~~~~-----~~~~-~~~~~~-----~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (758)
T 3ott_A 400 ATRQFI-----HYNI-VDNTGT-----YNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNG 468 (758)
T ss_dssp TTTEEE-----EEEE-ECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGT
T ss_pred CCCcEE-----Eeec-CCCcCC-----CCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccc
Confidence 776432 1110 000000 012357777777777655543346788888642 01111 11111111
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
. ... .+.++...++|.+.+.++..+-|..+|..++
T Consensus 469 l--------~~~---~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~ 503 (758)
T 3ott_A 469 L--------SGM---FINQIIPDNEGNVWVLLYNNKGIDKINPRTR 503 (758)
T ss_dssp C--------SCS---CEEEEEECTTSCEEEEETTCSSEEEEETTTT
T ss_pred c--------ccc---eeeeEEEcCCCCEEEEccCCCCcEEEeCCCC
Confidence 0 001 1357888888887764454556888898765
No 339
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.97 E-value=16 Score=34.65 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=35.8
Q ss_pred CCeeEEEeCCCCC--EEEEEcCCeEEEEeCccCceeeEEeecCCCccC----CCCCCeEEEEEeCC
Q 010933 215 FNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI 274 (497)
Q Consensus 215 ~~v~~~~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~ 274 (497)
...+.|+|.|+|. ++++-..|.|++++.........+.+++..... ..+.....|+++|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3567899999996 555558899999975411111111122211111 12567889999996
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=85.91 E-value=18 Score=31.99 Aligned_cols=23 Identities=4% Similarity=-0.024 Sum_probs=15.3
Q ss_pred CCCcEEEEEeC------CCeEEEEEccCCc
Q 010933 274 IYCNLLAYSSS------RGFVRLVDMRQSA 297 (497)
Q Consensus 274 ~~~~~l~~~~~------dg~i~v~d~~~~~ 297 (497)
++ .+++.|+. -..+.+||+.+.+
T Consensus 158 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 158 NG-MIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 45 67777764 2358899988753
No 341
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=82.50 E-value=24 Score=30.72 Aligned_cols=215 Identities=7% Similarity=-0.045 Sum_probs=104.5
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933 216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 295 (497)
.|..++.......++ .||.|+.|-....++.-. .......|..++.... ..++. . ||.|..|-...
T Consensus 25 ~i~~ia~G~~h~~~l--~~G~v~~wG~n~~Gqlg~--------p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL--KGGKVLGWGANLNGQLTM--------PAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEEEEE--ETTEEEEEECCSSSTTSC--------CGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCeEEEE--ECCEEEEEeCCCCCCCCC--------CccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCC
Confidence 466666544332222 388999997664443221 0112346777777655 34444 5 99999998765
Q ss_pred CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccC
Q 010933 296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 375 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (497)
...+...... ...|..++...+. .++.. +|.|+.|-....+++-.......
T Consensus 91 ~Gqlg~P~~~-----------------~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~~~~~~---------- 141 (282)
T 3qhy_B 91 DGQTTVPAEA-----------------RSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVPAEAQS---------- 141 (282)
T ss_dssp TSTTCCCGGG-----------------SSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCCGGGGS----------
T ss_pred CCCCCCCccc-----------------CCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCCccCCC----------
Confidence 3322111010 1246666655433 33334 89999997654333211111001
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-e
Q 010933 376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-H 454 (497)
Q Consensus 376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~ 454 (497)
. +..++... .+.+.-. ||.|+.|-......+..... -...+..++... . ..++. .++. .
T Consensus 142 ---~---i~~i~~G~--~~~~~l~-~G~v~~wG~n~~gqlg~p~~-~~~~v~~i~~G~--~------hs~al--~~G~v~ 201 (282)
T 3qhy_B 142 ---G---VTALDGGV--YTALAVK-NGGVIAWGDNYFGQTTVPAE-AQSGVDDVAGGI--F------HSLAL--KDGKVI 201 (282)
T ss_dssp ---S---EEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCCGG-GGSSEEEEEECS--S------EEEEE--ETTEEE
T ss_pred ---C---eEEEEccc--CEEEEEE-CCEEEEecCCCCCCCCCcee-cCCCeEEEEecC--C------EEEEE--ECCeEE
Confidence 1 13444433 2333334 78899997665433311111 123344444332 1 12344 4666 7
Q ss_pred ecC--CCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933 455 ENS--SSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 495 (497)
Q Consensus 455 iw~--~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~ 495 (497)
.|. ..............|..++-..... +|.. ++.+|.|
T Consensus 202 ~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~-~g~v~~w 242 (282)
T 3qhy_B 202 AWGDNRYKQTTVPTEALSGVSAIASGEWYS-LALK-NGKVIAW 242 (282)
T ss_dssp EEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE-TTEEEEE
T ss_pred EEECCCCCCCCCCcccCCCceEEEcCCCEE-EEEE-CCEEEEe
Confidence 772 2212222222234677777554433 4444 7778877
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=81.21 E-value=48 Score=33.32 Aligned_cols=155 Identities=10% Similarity=0.037 Sum_probs=75.7
Q ss_pred CCCEEEEE-cC------CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC--eEEEEEccC
Q 010933 225 DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQ 295 (497)
Q Consensus 225 ~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~v~d~~~ 295 (497)
+++.++.| .+ ..+.+||.. ... ...+. .+...... .+++...++ .+++.|+.++ .+.+||..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~-t~~-W~~~~----~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMK-TRE-WSMIK----SLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETT-TTE-EEECC----CCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCC-CCc-EEECC----CCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence 66666665 32 357788877 332 22210 11111111 223332366 7888887754 689999887
Q ss_pred CcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEec--------CeEEEEecCCCCce-----eeee
Q 010933 296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY--------MNLKLWDIRMDSTP-----VATF 361 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~--------~~i~lwd~~~~~~~-----~~~~ 361 (497)
..-. . .......+ .......++.+..+ +++++.|+. +.+.+||+.+ ... -..+
T Consensus 523 ~~W~----~-~~~~g~~p-------~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~w~~~~~W~~~ 589 (695)
T 2zwa_A 523 EIFK----D-VTPKDEFF-------QNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA-ENATEPITVIKK 589 (695)
T ss_dssp TEEE----E-CCCSSGGG-------GSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT-TCSSCCEEEEEE
T ss_pred CceE----E-ccCCCCCC-------CcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC-CccccceEEEEc
Confidence 5321 0 00000000 01122344555655 556666531 4688999986 331 1111
Q ss_pred eec-ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCC
Q 010933 362 KIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGS 413 (497)
Q Consensus 362 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d--------g~i~vw~~~~~~ 413 (497)
... .... .. .++....++++++.||.+ ..+.+||..+..
T Consensus 590 ~~~p~~~R----------~~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 590 LQHPLFQR----------YG---SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EECGGGCC----------BS---CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CCCCCCCc----------cc---ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 111 0100 00 134444447777777743 458899988763
No 343
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=79.83 E-value=31 Score=30.32 Aligned_cols=23 Identities=0% Similarity=-0.012 Sum_probs=16.1
Q ss_pred CCCcEEEEEeCCC-----eEEEEEccCCc
Q 010933 274 IYCNLLAYSSSRG-----FVRLVDMRQSA 297 (497)
Q Consensus 274 ~~~~~l~~~~~dg-----~i~v~d~~~~~ 297 (497)
++ .+++.|+.++ .+.+||+.+.+
T Consensus 196 ~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 196 DG-RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CC-EEEEEeccCCCCccceEEEEECCCCe
Confidence 45 7778887654 57888887753
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=79.28 E-value=5.4 Score=38.44 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=52.2
Q ss_pred CeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeE--EeecCC---CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeE
Q 010933 216 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 288 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~--~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 288 (497)
....+.++|||++++.+ -+.++.++|++.-...+. +++.+. ...+ ..-.....+|+++| +...+...|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceE
Confidence 34568899999999875 899999999883111000 000000 0111 23456788999999 766777789999
Q ss_pred EEEEccC
Q 010933 289 RLVDMRQ 295 (497)
Q Consensus 289 ~v~d~~~ 295 (497)
.-|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999975
No 345
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.14 E-value=30 Score=36.30 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccc
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 299 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 299 (497)
..+.+++..++. .++++.+.|+++|+|++.+++.+
T Consensus 236 ~~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeE
Confidence 356677777777 89999999999999999998765
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=75.75 E-value=61 Score=32.55 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCc--cEEEeecCchheec
Q 010933 121 PNGSMFILSTNDK--TIKLWKVRDQKVKK 147 (497)
Q Consensus 121 ~~~~~l~s~s~d~--~i~iw~~~~~~~~~ 147 (497)
.++..++.|+.++ .+.+||..+.....
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKD 527 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEE
Confidence 3677778877544 68888888766544
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=73.53 E-value=51 Score=29.53 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=15.6
Q ss_pred CCCEEEEeec-C---------CeEEEEEecCCc
Q 010933 43 TGDYLAVGDR-G---------GRVILFETVGGK 65 (497)
Q Consensus 43 ~g~~lasg~~-d---------g~i~iwd~~~~~ 65 (497)
++++++.|+. + ..+.+||..+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 5677777776 2 357888877653
No 348
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=70.98 E-value=54 Score=28.77 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=15.1
Q ss_pred CCCcEEEEEeCC-----CeEEEEEccCCc
Q 010933 274 IYCNLLAYSSSR-----GFVRLVDMRQSA 297 (497)
Q Consensus 274 ~~~~~l~~~~~d-----g~i~v~d~~~~~ 297 (497)
++ .+++.|+.+ ..+.+||+.+.+
T Consensus 206 ~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 206 KG-KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence 45 677777653 357788887653
No 349
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=70.98 E-value=89 Score=31.28 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=30.1
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 151 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~ 151 (497)
..|.++.+ +..++++-+.|+++|+|++.++++......
T Consensus 222 ~~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF----HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE----TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc----CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666655 367999999999999999999987766555
No 350
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=70.94 E-value=4.4 Score=36.53 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=61.9
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE--ecCeEEEEecCCC
Q 010933 277 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYMNLKLWDIRMD 354 (497)
Q Consensus 277 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~i~lwd~~~~ 354 (497)
.++++++.||.|.-.|..+|+...+ ++. ....+...... ... ..++..++.. .+|.|..++..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~----~~~--~~~~p~~~~~~--~~~-----~~~~~~~vv~p~~dG~l~a~~~~~- 76 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS----IEP--ENFQPLIEIQE--PSR-----LETYETLIIEPFGDGNIYYFNAHQ- 76 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE----ECG--GGSCCSEECCC--SCT-----TTSSEEEEECCSTTTEEEEEETTT-
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE----ecC--CccCCcEEecC--Ccc-----ccCCcEEEEEECCCCEEEEEECCC-
Confidence 5788999999999999999975532 111 00000000000 000 0123333332 468888888865
Q ss_pred CceeeeeeecccccccccccCCCCCccceeEEEEc-----------CCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933 355 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-----------GDGLHFATGSYSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-----------~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 420 (497)
+.....+........ .-+... ..+..+++|+.+|++.-.|+.+|+.+ ..+.
T Consensus 77 G~~~~~~~~~~lv~~--------------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~-W~~~ 138 (339)
T 2be1_A 77 GLQKLPLSIRQLVST--------------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII-SAFG 138 (339)
T ss_dssp EEEEEEEEHHHHHTT--------------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE-EEES
T ss_pred CcEEeeeccccceec--------------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE-EEEe
Confidence 544333332211000 002211 14567889999999999999998554 4443
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=70.71 E-value=52 Score=28.51 Aligned_cols=145 Identities=9% Similarity=-0.044 Sum_probs=73.0
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933 216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 295 (497)
.|..++.......++ . +|.|+.|-....++.-. .......|..++..... .++. . ||.|..|-...
T Consensus 103 ~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg~--------~~~~~~~i~~i~~G~~~--~~~l-~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 103 GVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTTV--------PAEAQSGVTALDGGVYT--ALAV-K-NGGVIAWGDNY 168 (282)
T ss_dssp SEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTSC--------CGGGGSSEEEEEECSSE--EEEE-E-TTEEEEEECCT
T ss_pred CeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCCC--------CccCCCCeEEEEcccCE--EEEE-E-CCEEEEecCCC
Confidence 455555544433333 3 88888887664343211 11123557777766543 3333 3 79999997765
Q ss_pred CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccC
Q 010933 296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 375 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (497)
...+...... ...|..++...+ ..++. .+|.|+.|=....+++-.......
T Consensus 169 ~gqlg~p~~~-----------------~~~v~~i~~G~~-hs~al-~~G~v~~wG~n~~gqlg~p~~~~~---------- 219 (282)
T 3qhy_B 169 FGQTTVPAEA-----------------QSGVDDVAGGIF-HSLAL-KDGKVIAWGDNRYKQTTVPTEALS---------- 219 (282)
T ss_dssp TSTTSCCGGG-----------------GSSEEEEEECSS-EEEEE-ETTEEEEEECCTTSTTCCCGGGGS----------
T ss_pred CCCCCCceec-----------------CCCeEEEEecCC-EEEEE-ECCeEEEEECCCCCCCCCCcccCC----------
Confidence 3222110000 134555654432 23444 679999997654333211111111
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
. +..++...... +.-. ||.|+.|=....
T Consensus 220 ---~---v~~i~~G~~h~--~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 220 ---G---VSAIASGEWYS--LALK-NGKVIAWGSSRT 247 (282)
T ss_dssp ---S---CCEEEECSSCE--EEEE-TTEEEEESTTCC
T ss_pred ---C---ceEEEcCCCEE--EEEE-CCEEEEecCCCC
Confidence 1 13555543332 3333 899999976543
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=69.00 E-value=12 Score=36.07 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=50.4
Q ss_pred ccccEEEEeeCCCEEEEEec--CeEEEEecCCC-----Cce-------eeeeeecccccccccccCCCCCccceeEEEEc
Q 010933 324 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMD-----STP-------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 389 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 389 (497)
.....+.++|||++++++.. .++.++|++.- .+. .......-+ -+..+|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG----------------PlHt~Fd 386 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG----------------PLHTTFD 386 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC----------------EEEEEEC
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc----------------ccEEEEC
Confidence 45678999999999999854 89999998731 111 111111111 1579999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC
Q 010933 390 GDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 390 ~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
++|....|---|..|.-|++..
T Consensus 387 ~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 387 GRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SSSEEEEEETTTTEEEEEEHHH
T ss_pred CCCceEeeeeecceEEEEeccH
Confidence 9995555666899999999875
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=67.17 E-value=76 Score=28.99 Aligned_cols=156 Identities=8% Similarity=0.043 Sum_probs=86.6
Q ss_pred eEEEEeCccCc--eeeEEeecCCCccCCCCCCeEEEEEe---CC---CCcEEEEEe-CCCeEEEEEccCCccccccccee
Q 010933 236 RINLWNLEISD--QCFNIVDMKPSNMDDLTEVITSAEFH---PI---YCNLLAYSS-SRGFVRLVDMRQSALCDHSARIL 306 (497)
Q Consensus 236 ~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~---~~---~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~ 306 (497)
.|.+||+. +. +.++.+.+++.... ....+..++++ |. +..+++.+. ..+-|.++|+.+++.. ++.
T Consensus 124 kLv~~DL~-t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~ 197 (381)
T 3q6k_A 124 AIVAYDLK-QPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVT 197 (381)
T ss_dssp EEEEEESS-STTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEE
T ss_pred eEEEEECC-CCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEc
Confidence 56677877 44 66666665543333 34678888888 22 113444444 3678999999988654 322
Q ss_pred cccccccCCccc--cccc----cccccEEEEeeC----CCEEEEEecCeEEEEecCC----CCc---eeeeeeecccccc
Q 010933 307 RDAAESHGSKSF--FTEI----IASISDIKFAND----GQHLLSRDYMNLKLWDIRM----DST---PVATFKIHEHLRP 369 (497)
Q Consensus 307 ~~~~~~~~~~~~--~~~~----~~~i~~~~~s~~----g~~l~~~~~~~i~lwd~~~----~~~---~~~~~~~~~~~~~ 369 (497)
.. ...++.... ..+. ...+..|+++|+ ++.|....-..-++|.+.+ +.. .++.+ +..+..
T Consensus 198 ~~-~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~- 274 (381)
T 3q6k_A 198 HP-TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKY- 274 (381)
T ss_dssp CG-GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTT-
T ss_pred cC-CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCC-
Confidence 11 111211101 1111 257899999998 7888776544445555432 011 11111 111100
Q ss_pred cccccCCCCCccceeEEEEc-CCCCEEEEEeCCCcEEEEEcCC
Q 010933 370 KLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
.+-..++.. .+|.+.++--..+.|..|+..+
T Consensus 275 -----------s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 275 -----------NDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -----------CCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred -----------CCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 000246775 5777777778889999999875
No 354
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=56.03 E-value=1.7e+02 Score=29.46 Aligned_cols=161 Identities=11% Similarity=0.039 Sum_probs=79.8
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933 216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 295 (497)
.|.++...+++..|-.|.++-+..+|.. .++..... .+ ....|.++...++| .+ ..|+.+ -+.+++..+
T Consensus 192 ~i~~i~~d~~~~~lWigt~~Gl~~~~~~-~~~~~~~~-----~l--~~~~i~~i~~d~~g-~l-WigT~~-Gl~~~~~~~ 260 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTEGYLFQYFPS-TGQIKQTE-----AF--HNNSIKSLALDGNG-DL-LAGTDN-GLYVYHNDT 260 (758)
T ss_dssp CEEEEEEETTTTEEEEEEEEEEEEEETT-TTEEEEEE-----EE--EEEEEEEEEECTTC-CE-EEEETT-EEEEECCTT
T ss_pred eeEEEEEECCCCEEEEEECCCCeEEcCC-CCeEEecc-----CC--CCCeEEEEEEcCCC-CE-EEEeCC-ceeEEecCC
Confidence 4777877776665544522457888876 33332211 01 23458888888887 54 445544 578888766
Q ss_pred CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccC
Q 010933 296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 375 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (497)
++.. .+....... ..+ ....|.++....+|.+-+....| +.++... . ....+......
T Consensus 261 ~~~~-----~~~~~~~~~---~~l--~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~--~-~~~~~~~~~~~-------- 318 (758)
T 3ott_A 261 TPLQ-----HIIHDSRNI---QSL--TNNIIWNIFADQEHNIWLGTDYG-ISLSRYN--S-ALQFIPISQIT-------- 318 (758)
T ss_dssp SCCE-----EECCCTTCT---TSC--SCSCEEEEEECTTCCEEEEESSS-EEEECCC--C--CEEEEHHHHS--------
T ss_pred CcEE-----EEEcCCCCc---CcC--CcCeEEEEEEcCCCCEEEEeCCc-ccccccC--C-ceeEEecccCC--------
Confidence 5321 111100000 000 12458888877777655544335 5444322 1 12222111000
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
.......+.++.-..+|.+.+. +.+| +..++..+
T Consensus 319 ~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~ 352 (758)
T 3ott_A 319 GTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPA 352 (758)
T ss_dssp CSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTT
T ss_pred CCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccc
Confidence 0000011357777777776654 4554 66666554
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.55 E-value=43 Score=36.06 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=27.5
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccc
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 299 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 299 (497)
.+.+++..++. .++++-+.|+++|+|++.+++.+
T Consensus 239 ~~vs~~~~~~~-~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTT-TEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCc-cEEEEEeCCCEEEEEECCCCCeE
Confidence 34455566776 89999999999999999998765
No 356
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.30 E-value=1e+02 Score=32.37 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=30.9
Q ss_pred CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecC
Q 010933 216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 255 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 255 (497)
.+.++...++..++++- .|+++++|++. .++++...++.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~-t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLS-TNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETT-TTEEEEEEECC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECC-CCCeEeeeccc
Confidence 56677777777788775 99999999999 67788777664
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=43.75 E-value=2.1e+02 Score=26.87 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=22.8
Q ss_pred cceEEEEEcCCCC-EEEEeecCCeEEEEEec
Q 010933 33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETV 62 (497)
Q Consensus 33 ~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~ 62 (497)
..-+.|+|.|+|. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3457999999996 45556778999999754
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.93 E-value=88 Score=30.39 Aligned_cols=62 Identities=15% Similarity=-0.019 Sum_probs=37.8
Q ss_pred ccccEEEEeeCCCEEEEEec-------------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933 324 ASISDIKFANDGQHLLSRDY-------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 390 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~~-------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 390 (497)
.....|.|+++|.+.++.+. ..+..++..+ ++....+.+.... ..+.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~a--------------EpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCc--------------cccCCEECC
Confidence 34578999999987774321 1455555543 5444434332211 126899999
Q ss_pred CCCEEEEEeC
Q 010933 391 DGLHFATGSY 400 (497)
Q Consensus 391 ~~~~l~s~~~ 400 (497)
|++.|++.-.
T Consensus 541 D~ktLfV~vQ 550 (592)
T 4a9v_A 541 DQKTLFVGIQ 550 (592)
T ss_dssp TSSEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 9998886653
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=37.85 E-value=95 Score=30.37 Aligned_cols=59 Identities=14% Similarity=-0.021 Sum_probs=35.9
Q ss_pred ccEEEEeeCCCEEEEEec-------------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC
Q 010933 326 ISDIKFANDGQHLLSRDY-------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 392 (497)
Q Consensus 326 i~~~~~s~~g~~l~~~~~-------------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 392 (497)
.-.|+|+|.|.++++-+. +.+.+.+..+ ++..+.+.+.... .++.++|+||+
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P~ga--------------E~TG~~fspDg 542 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSPDQ 542 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECTTS
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCCCCc--------------cCcCeeECCCC
Confidence 456899999986666321 1344445443 4544444444321 12699999999
Q ss_pred CEEEEEe
Q 010933 393 LHFATGS 399 (497)
Q Consensus 393 ~~l~s~~ 399 (497)
+.|+..-
T Consensus 543 ~tlfvni 549 (592)
T 3zwu_A 543 KTLFVGI 549 (592)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9887653
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=34.85 E-value=2.6e+02 Score=25.41 Aligned_cols=124 Identities=5% Similarity=0.100 Sum_probs=62.8
Q ss_pred CCeeEEEeC---CC----CCEEEEE--cCCeEEEEeCccCceeeEEeecC--CC-----ccCCC----CCCeEEEEEeCC
Q 010933 215 FNINSISNN---SD----CETFVSA--DDLRINLWNLEISDQCFNIVDMK--PS-----NMDDL----TEVITSAEFHPI 274 (497)
Q Consensus 215 ~~v~~~~~~---~~----~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~--~~-----~~~~~----~~~i~~~~~~~~ 274 (497)
+.+..+.+. |. +.++..+ ....|.++|+. .++...+.... +. ...+. ...+..++++|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~-~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK-KQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT-TTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC-CCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence 456677766 22 2333344 57789999998 55555543210 10 00111 247888999987
Q ss_pred ----CCcEEEEEeCCCeEEEEEccCCcccc----cccceecccccccCCccccccccccccEEEEe-eCCCEEEEE-ecC
Q 010933 275 ----YCNLLAYSSSRGFVRLVDMRQSALCD----HSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSR-DYM 344 (497)
Q Consensus 275 ----~~~~l~~~~~dg~i~v~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~-~~~ 344 (497)
+ +.|+.....+. ++|.+.+.-+.. ...+.+.. .+....-..++++ .+|.++++- ..+
T Consensus 231 ~~~~~-~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~-----------kg~~s~~~~~~~D~~~G~ly~~~~~~~ 297 (381)
T 3q6k_A 231 DSEGN-RPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGN-----------RGKYNDAIALAYDPKTKVIFFAEANTK 297 (381)
T ss_dssp CTTSC-CEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEE-----------CCTTCCEEEEEECTTTCEEEEEESSSS
T ss_pred cCCCC-eEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeee-----------cCCCCCcceEEEeCCCCeEEEEeccCC
Confidence 5 66666655442 444444321110 01111111 0000122345665 456555554 349
Q ss_pred eEEEEecC
Q 010933 345 NLKLWDIR 352 (497)
Q Consensus 345 ~i~lwd~~ 352 (497)
.|..|+..
T Consensus 298 aI~~w~~~ 305 (381)
T 3q6k_A 298 QVSCWNTQ 305 (381)
T ss_dssp EEEEEETT
T ss_pred eEEEEeCC
Confidence 99999986
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.35 E-value=38 Score=36.48 Aligned_cols=31 Identities=6% Similarity=-0.085 Sum_probs=26.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 385 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 385 ~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
+++..++..+|++-+.|++++||++.+++.+
T Consensus 242 s~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 242 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred EeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 5677788899999999999999999998544
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=30.30 E-value=55 Score=32.76 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=27.0
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCcc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKN 66 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~ 66 (497)
...|.|+.+. ..+|++-+.|.++|+|++.++..
T Consensus 221 ~~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 221 DSVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp CCEEEEEEET--TTEEEEEETTCEEEEEETTTTEE
T ss_pred CceEEEeccC--CcEEEEEEcCCeEEEEEcCCCce
Confidence 3467777664 67999999999999999998763
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=29.20 E-value=1.1e+02 Score=29.93 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=36.7
Q ss_pred CeEEEEEeCCCCcEEEEEeCC------------CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933 265 VITSAEFHPIYCNLLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 332 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 332 (497)
..-.|+|+|.| .+++.-..+ ..+.+.+..++++. +.+... ....++.++|+
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~----rf~~~P------------~gaE~TG~~fs 539 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR----RFMVGP------------IGCEVTGISFS 539 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEE----EEEECC------------TTCEEEEEEEC
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEE----EEEeCC------------CCccCcCeeEC
Confidence 44678999999 755543322 23445555555432 333221 12578999999
Q ss_pred eCCCEEEEE
Q 010933 333 NDGQHLLSR 341 (497)
Q Consensus 333 ~~g~~l~~~ 341 (497)
||++.|+..
T Consensus 540 pDg~tlfvn 548 (592)
T 3zwu_A 540 PDQKTLFVG 548 (592)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999988775
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=21.32 E-value=4.8e+02 Score=25.36 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=36.9
Q ss_pred CCeeEEEeCCCCCEEEEE-c------------CCeEEEEeCccCceeeEEeecCCCccCC-CCCCeEEEEEeCCCCcEEE
Q 010933 215 FNINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLA 280 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~ 280 (497)
.....|.|.++|.+.+.. . ...+..++.. .++...+ +.. ....++.++|+||+ +.|+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~-tGel~~f-------l~~P~~aEpnGiafSPD~-ktLf 546 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA-TGEIRRF-------MVGPIGCEVTGISFSPDQ-KTLF 546 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTT-TCCEEEE-------EECCTTCEEEEEEECTTS-SEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCC-CCeEEEE-------EeCCCCccccCCEECCCC-CEEE
Confidence 345689999999887743 1 1255666655 3444433 221 23568999999999 6655
Q ss_pred EE
Q 010933 281 YS 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 547 V~ 548 (592)
T 4a9v_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 54
Done!