Query         010935
Match_columns 497
No_of_seqs    259 out of 929
Neff          5.7 
Searched_HMMs 29240
Date          Mon Mar 25 17:21:23 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010935hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2elk_A SPCC24B10.08C protein;   99.6 4.5E-15 1.5E-19  115.0   7.2   55  134-188     3-58  (58)
  2 2yus_A SWI/SNF-related matrix-  99.5 1.2E-13 4.1E-18  113.6   8.3   56  138-194    16-71  (79)
  3 1x41_A Transcriptional adaptor  99.4 5.2E-13 1.8E-17  104.0   7.1   55  136-190     4-58  (60)
  4 2e5r_A Dystrobrevin alpha; ZZ   99.4   3E-13   1E-17  106.7   4.9   57   75-132     4-61  (63)
  5 2fc7_A ZZZ3 protein; structure  99.2 9.3E-12 3.2E-16  103.0   6.1   57   80-137    19-79  (82)
  6 1guu_A C-MYB, MYB proto-oncoge  99.0 2.5E-10 8.5E-15   85.9   5.7   46  140-185     3-48  (52)
  7 2dip_A Zinc finger SWIM domain  99.0 1.1E-10 3.9E-15   99.6   4.1   55   83-148    32-87  (98)
  8 1gvd_A MYB proto-oncogene prot  99.0   3E-10   1E-14   85.6   5.7   46  140-185     3-48  (52)
  9 1w0t_A Telomeric repeat bindin  99.0 6.2E-10 2.1E-14   84.3   5.9   45  141-185     3-49  (53)
 10 2yum_A ZZZ3 protein, zinc fing  99.0 6.3E-10 2.1E-14   90.0   6.0   51  138-188     6-61  (75)
 11 2d9a_A B-MYB, MYB-related prot  99.0 9.6E-10 3.3E-14   85.2   6.6   48  138-185     6-53  (60)
 12 2dim_A Cell division cycle 5-l  98.9 2.5E-09 8.7E-14   85.4   6.9   48  138-185     7-54  (70)
 13 2cu7_A KIAA1915 protein; nucle  98.9 3.4E-09 1.2E-13   85.2   6.6   48  138-186     7-54  (72)
 14 3sjm_A Telomeric repeat-bindin  98.9 2.8E-09 9.5E-14   84.1   5.9   46  140-185    11-58  (64)
 15 1ity_A TRF1; helix-turn-helix,  98.9 2.8E-09 9.7E-14   84.9   5.8   48  139-186     9-58  (69)
 16 1tot_A CREB-binding protein; z  98.8 6.9E-10 2.4E-14   84.2   2.1   46   79-132     3-48  (52)
 17 1wgx_A KIAA1903 protein; MYB D  98.8 3.8E-09 1.3E-13   85.4   5.2   46  140-185     8-56  (73)
 18 2cjj_A Radialis; plant develop  98.8 2.8E-09 9.6E-14   90.1   4.6   59  140-198     8-74  (93)
 19 2cqr_A RSGI RUH-043, DNAJ homo  98.8 2.9E-09 9.8E-14   86.2   4.0   51  138-189    16-69  (73)
 20 2din_A Cell division cycle 5-l  98.6 4.2E-08 1.4E-12   77.4   6.6   47  137-185     6-52  (66)
 21 2ltp_A Nuclear receptor corepr  98.1 4.1E-09 1.4E-13   88.3   0.0   50  135-185    11-60  (89)
 22 2ckx_A NGTRF1, telomere bindin  98.6 4.4E-08 1.5E-12   81.1   5.7   45  142-186     2-50  (83)
 23 2k9n_A MYB24; R2R3 domain, DNA  98.6   5E-08 1.7E-12   84.0   5.9   46  141-186     2-47  (107)
 24 1gv2_A C-MYB, MYB proto-oncoge  98.6 4.8E-08 1.6E-12   83.5   5.7   47  139-185     3-49  (105)
 25 3zqc_A MYB3; transcription-DNA  98.5 6.9E-08 2.4E-12   86.0   4.9   47  140-186     2-48  (131)
 26 1h8a_C AMV V-MYB, MYB transfor  98.5 1.6E-07 5.3E-12   83.2   6.6   49  138-186    25-73  (128)
 27 2eqr_A N-COR1, N-COR, nuclear   98.5 1.5E-07 5.1E-12   73.4   5.5   44  140-184    12-55  (61)
 28 2llk_A Cyclin-D-binding MYB-li  98.4 3.3E-07 1.1E-11   74.1   6.1   46  137-184    20-65  (73)
 29 3osg_A MYB21; transcription-DN  98.4 3.9E-07 1.3E-11   80.6   6.4   48  138-186     9-56  (126)
 30 2iw5_B Protein corest, REST co  98.4 4.2E-07 1.4E-11   87.7   6.8   49  137-186   130-178 (235)
 31 1gv2_A C-MYB, MYB proto-oncoge  98.4 4.8E-07 1.6E-11   77.2   6.1   47  138-185    54-100 (105)
 32 2k9n_A MYB24; R2R3 domain, DNA  98.3 6.2E-07 2.1E-11   77.0   6.7   47  138-185    51-97  (107)
 33 3osg_A MYB21; transcription-DN  98.3 7.1E-07 2.4E-11   78.9   6.1   47  138-185    60-106 (126)
 34 2roh_A RTBP1, telomere binding  98.3 7.8E-07 2.7E-11   78.6   6.0   47  140-186    31-81  (122)
 35 2aje_A Telomere repeat-binding  98.3 6.6E-07 2.3E-11   77.2   5.1   49  139-187    12-64  (105)
 36 2cqq_A RSGI RUH-037, DNAJ homo  98.2 1.6E-06 5.5E-11   69.9   6.4   45  140-185     8-55  (72)
 37 3zqc_A MYB3; transcription-DNA  98.2 1.1E-06 3.6E-11   78.3   5.9   47  139-186    53-99  (131)
 38 1h8a_C AMV V-MYB, MYB transfor  98.2 1.5E-06 5.1E-11   76.8   6.2   47  138-185    77-123 (128)
 39 2juh_A Telomere binding protei  98.2 1.1E-06 3.7E-11   77.6   4.8   48  139-186    16-67  (121)
 40 1h89_C C-MYB, MYB proto-oncoge  98.2 1.9E-06 6.5E-11   78.9   6.4   48  138-185    56-103 (159)
 41 2yqk_A Arginine-glutamic acid   98.0 5.6E-06 1.9E-10   64.9   5.6   44  139-183     8-52  (63)
 42 2xag_B REST corepressor 1; ami  98.0 4.9E-06 1.7E-10   88.5   6.3   47  139-186   379-425 (482)
 43 1h89_C C-MYB, MYB proto-oncoge  97.9   1E-05 3.4E-10   74.0   5.9   47  138-185   108-154 (159)
 44 4eef_G F-HB80.4, designed hema  97.9 2.4E-06 8.1E-11   68.8   1.3   44  140-183    20-66  (74)
 45 2crg_A Metastasis associated p  97.8 2.1E-05   7E-10   63.0   5.2   44  140-184     8-52  (70)
 46 4a69_C Nuclear receptor corepr  97.7 3.9E-05 1.3E-09   64.8   5.3   43  140-183    43-85  (94)
 47 1x58_A Hypothetical protein 49  97.6 7.1E-05 2.4E-09   58.5   5.6   46  139-185     7-55  (62)
 48 1ign_A Protein (RAP1); RAP1,ye  97.3 0.00013 4.4E-09   71.1   4.2   47  140-186     8-59  (246)
 49 2cuj_A Transcriptional adaptor  97.0 0.00037 1.3E-08   60.3   3.2   38  459-496     7-46  (108)
 50 2xb0_X Chromo domain-containin  96.1  0.0042 1.4E-07   61.7   4.5   32  137-168   165-196 (270)
 51 3hm5_A DNA methyltransferase 1  95.9   0.012   4E-07   49.6   5.9   45  140-185    30-79  (93)
 52 1fex_A TRF2-interacting telome  95.9  0.0065 2.2E-07   46.8   3.8   46  140-185     2-56  (59)
 53 4b4c_A Chromodomain-helicase-D  95.8  0.0072 2.5E-07   57.1   4.7   31  139-169   133-163 (211)
 54 1ug2_A 2610100B20RIK gene prod  95.6   0.018 6.2E-07   48.0   5.5   45  142-186    35-81  (95)
 55 1ofc_X ISWI protein; nuclear p  95.5    0.01 3.5E-07   59.9   4.7   48  141-189   111-158 (304)
 56 2ebi_A DNA binding protein GT-  94.6   0.016 5.6E-07   47.3   2.7   45  141-185     5-62  (86)
 57 1irz_A ARR10-B; helix-turn-hel  93.8   0.098 3.3E-06   41.0   5.3   48  140-187     7-58  (64)
 58 4iej_A DNA methyltransferase 1  93.3    0.14 4.7E-06   43.0   5.9   45  140-185    30-79  (93)
 59 2xag_B REST corepressor 1; ami  92.8    0.02 6.8E-07   61.0   0.0   45  139-184   188-232 (482)
 60 2lr8_A CAsp8-associated protei  91.9   0.021 7.1E-07   45.2   0.0   44  141-185    15-60  (70)
 61 3ny3_A E3 ubiquitin-protein li  89.6    0.16 5.5E-06   40.9   2.3   41   87-132     6-50  (75)
 62 1ofc_X ISWI protein; nuclear p  89.5    0.24 8.3E-06   49.9   4.1   46  140-185   212-272 (304)
 63 2y9y_A Imitation switch protei  89.4    0.28 9.7E-06   50.6   4.5   60  141-202   124-184 (374)
 64 4b4c_A Chromodomain-helicase-D  88.7    0.37 1.3E-05   45.2   4.5   42  141-182     8-53  (211)
 65 1v5n_A PDI-like hypothetical p  87.4    0.28 9.6E-06   40.6   2.5   32   82-115    47-78  (89)
 66 3nis_A E3 ubiquitin-protein li  86.4    0.62 2.1E-05   38.1   3.9   42   86-132     9-54  (82)
 67 2y9y_A Imitation switch protei  75.0     2.8 9.7E-05   43.2   5.0   45  140-184   228-287 (374)
 68 2d8v_A Zinc finger FYVE domain  69.4     3.1 0.00011   32.6   2.9   32   81-116     7-38  (67)
 69 1wg2_A Zinc finger (AN1-like)   68.4      12 0.00041   29.2   6.0   53   74-133     7-59  (64)
 70 1weo_A Cellulose synthase, cat  65.6     2.2 7.4E-05   35.5   1.4   33   82-115    16-52  (93)
 71 1wfp_A Zinc finger (AN1-like)   60.9      21 0.00072   28.5   6.2   50   77-133    20-69  (74)
 72 1z60_A TFIIH basal transcripti  59.8     3.8 0.00013   31.4   1.7   30   84-114    17-46  (59)
 73 1wfh_A Zinc finger (AN1-like)   56.1      19 0.00064   28.0   5.1   49   78-133    11-59  (64)
 74 3e7l_A Transcriptional regulat  36.6      27 0.00093   26.0   3.3   26  146-172    19-44  (63)
 75 2cs3_A Protein C14ORF4, MY039   36.4      35  0.0012   27.9   3.9   37   79-115    12-48  (93)
 76 1wfl_A Zinc finger protein 216  36.4      70  0.0024   25.5   5.6   47   80-133    23-69  (74)
 77 2zc2_A DNAD-like replication p  33.8      20 0.00067   28.0   2.1   17  401-417    61-77  (78)
 78 2li6_A SWI/SNF chromatin-remod  33.2      38  0.0013   28.8   4.0   36  150-186    53-96  (116)
 79 1ign_A Protein (RAP1); RAP1,ye  32.4      57   0.002   31.7   5.5   25  162-186   173-197 (246)
 80 2cr8_A MDM4 protein; ZF-ranbp   32.1      29   0.001   25.8   2.6   31   96-126    10-47  (53)
 81 1wfk_A Zinc finger, FYVE domai  30.4      42  0.0014   27.2   3.6   35   80-115     7-42  (88)
 82 2ffw_A Midline-1; B-BOX, ring   27.2   1E+02  0.0035   24.1   5.4   34   80-115    28-62  (78)
 83 2i5u_A DNAD domain protein; st  25.9      25 0.00087   28.0   1.5   18  400-417    65-82  (83)
 84 2xb0_X Chromo domain-containin  25.7      93  0.0032   30.5   5.8   46  140-185     3-52  (270)
 85 1twf_L ABC10-alpha, DNA-direct  24.8      23  0.0008   27.8   1.1   14   79-92     25-38  (70)
 86 2jne_A Hypothetical protein YF  24.7      26 0.00088   29.5   1.3   32   83-115    33-70  (101)
 87 2jxj_A Histone demethylase jar  23.6      69  0.0024   26.0   3.8   37  149-185    39-86  (96)
 88 2vrw_B P95VAV, VAV1, proto-onc  23.4      51  0.0017   33.3   3.6   36   81-117   356-393 (406)
 89 2jrz_A Histone demethylase jar  23.3   1E+02  0.0034   26.1   4.9   36  149-185    43-90  (117)
 90 2lm1_A Lysine-specific demethy  22.7 1.1E+02  0.0037   25.3   4.9   36  149-185    47-94  (107)
 91 3fh3_A Putative ECF-type sigma  22.3      98  0.0033   28.1   4.7   43  356-398    67-123 (158)
 92 2cxy_A BAF250B subunit, HBAF25  21.8 1.1E+02  0.0038   26.1   5.0   36  149-185    54-101 (125)

No 1  
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56  E-value=4.5e-15  Score=115.05  Aligned_cols=55  Identities=44%  Similarity=0.854  Sum_probs=52.5

Q ss_pred             CCCCCCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhC-CCCHHHHHHHHHhhccC
Q 010935          134 LSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMN  188 (497)
Q Consensus       134 ~~~p~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vg-tkt~~ec~~hy~~~yi~  188 (497)
                      .+||++...||++|+.+|+++|++||.+||..||.+|+ +||+.||+.||.++||+
T Consensus         3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~   58 (58)
T 2elk_A            3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE   58 (58)
T ss_dssp             SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence            46899999999999999999999999999999999999 99999999999999974


No 2  
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.46  E-value=1.2e-13  Score=113.64  Aligned_cols=56  Identities=32%  Similarity=0.817  Sum_probs=51.8

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhccCCCCCCC
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPL  194 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~yi~~~~~pl  194 (497)
                      .....||++|+.+||+||++|| +||..||++|++||+.||+.||.++|+++++..-
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~   71 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEN   71 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCC
T ss_pred             ccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhccccccccc
Confidence            3467999999999999999999 9999999999999999999999999999987643


No 3  
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.39  E-value=5.2e-13  Score=103.99  Aligned_cols=55  Identities=36%  Similarity=0.677  Sum_probs=51.0

Q ss_pred             CCCCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhccCCC
Q 010935          136 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSP  190 (497)
Q Consensus       136 ~p~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~yi~~~  190 (497)
                      .++....||++||.+|+++|++||.+||..||.+|++||+.||+.||.++++.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence            4567789999999999999999999999999999999999999999999998764


No 4  
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38  E-value=3e-13  Score=106.69  Aligned_cols=57  Identities=26%  Similarity=0.719  Sum_probs=51.0

Q ss_pred             CCCCCcCCccccccccc-cCCCceEEcCCCCCcccchhcccccccccCCCCCCCccccC
Q 010935           75 AGEGKRALYHCNYCNKD-ITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD  132 (497)
Q Consensus        75 ~~e~~~~~~~Cd~C~~~-i~~~~ri~C~~C~d~dLC~~CFs~G~e~~~Hk~~H~Y~vi~  132 (497)
                      ++++..+.+.||+|+.. |.+ +||+|++|+|||||..||..|.+.+.|+++|+|+.+.
T Consensus         4 ~~~~v~H~~~Cd~C~~~pi~G-~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~   61 (63)
T 2e5r_A            4 GSSGVFHPVECSYCHSESMMG-FRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT   61 (63)
T ss_dssp             CSSSCCSCSCCSSSCCCSSCS-CEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred             CcCCceeCCCCcCCCCcceec-ceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence            34455677899999986 887 9999999999999999999999999999999999875


No 5  
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.23  E-value=9.3e-12  Score=103.03  Aligned_cols=57  Identities=30%  Similarity=0.624  Sum_probs=50.9

Q ss_pred             cCCcccccccc-ccCCCceEEcCCCCC---cccchhcccccccccCCCCCCCccccCCCCCC
Q 010935           80 RALYHCNYCNK-DITGKIRIKCAVCPD---FDLCIECFSVGVEVHPHKSNHPYRVMDNLSFP  137 (497)
Q Consensus        80 ~~~~~Cd~C~~-~i~~~~ri~C~~C~d---~dLC~~CFs~G~e~~~Hk~~H~Y~vi~~~~~p  137 (497)
                      -..+.||+|++ +|.+ +||+|++|+|   ||||..||..|.+...|+.+|+|++|.....|
T Consensus        19 H~~~~Cd~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p   79 (82)
T 2fc7_A           19 HVGFKCDNCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP   79 (82)
T ss_dssp             ESSCCCSSSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred             eCcCCCCCCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence            34789999997 6887 9999999999   99999999999999999999999999775544


No 6  
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.03  E-value=2.5e-10  Score=85.95  Aligned_cols=46  Identities=22%  Similarity=0.463  Sum_probs=43.5

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      ...||.+|+.+|+++|+.||.+||..||.+|++||+.||+.||.++
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~   48 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV   48 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4689999999999999999988999999999999999999999875


No 7  
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.03  E-value=1.1e-10  Score=99.59  Aligned_cols=55  Identities=29%  Similarity=0.739  Sum_probs=47.6

Q ss_pred             cccccccc-ccCCCceEEcCCCCCcccchhcccccccccCCCCCCCccccCCCCCCCCCCCCcchhH
Q 010935           83 YHCNYCNK-DITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDE  148 (497)
Q Consensus        83 ~~Cd~C~~-~i~~~~ri~C~~C~d~dLC~~CFs~G~e~~~Hk~~H~Y~vi~~~~~p~~~~~Wta~EE  148 (497)
                      +.||+|+. .|.+ .||+|++|+|||||..||..+.    | ..|+|+.|.+.     ...|++.|+
T Consensus        32 v~Cd~C~~~pI~G-~RykC~~C~d~DLC~~C~~~~~----H-~~H~f~~i~~~-----~~~w~~~e~   87 (98)
T 2dip_A           32 IPCNNCKQFPIEG-KCYKCTECIEYHLCQECFDSYC----H-LSHTFTFREKR-----NQKWRSLEK   87 (98)
T ss_dssp             CCCSSSCCSSCCS-CEEEESSSSSCEEEHHHHHTTS----G-GGSCEEECCSS-----SCCCEECCC
T ss_pred             CCCcCCCCCCccc-CeEECCCCCCccHHHHHHccCC----C-CCCCeeEecCC-----CCCCccccc
Confidence            89999997 6887 9999999999999999999984    8 79999988663     357988765


No 8  
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.02  E-value=3e-10  Score=85.57  Aligned_cols=46  Identities=24%  Similarity=0.563  Sum_probs=43.5

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      ...||.+|+.+|++++..||.+||..||.+|++||..||+.||.++
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~   48 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4689999999999999999988999999999999999999999865


No 9  
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.97  E-value=6.2e-10  Score=84.28  Aligned_cols=45  Identities=24%  Similarity=0.560  Sum_probs=43.0

Q ss_pred             CCCcchhHHHHHHHHHHcCCCChhHHHHhhC--CCCHHHHHHHHHhh
Q 010935          141 PDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV  185 (497)
Q Consensus       141 ~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vg--tkt~~ec~~hy~~~  185 (497)
                      ..||.+|+.+|+++|+.||.+||..||.+++  +||..||+.+|.++
T Consensus         3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~   49 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM   49 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            5799999999999999999999999999999  99999999999875


No 10 
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97  E-value=6.3e-10  Score=90.03  Aligned_cols=51  Identities=16%  Similarity=0.335  Sum_probs=46.7

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCC-----CChhHHHHhhCCCCHHHHHHHHHhhccC
Q 010935          138 LICPDWNADDEILLLEGIEMYGL-----GNWAEIAEHVGTKTKELCIEHYTNVYMN  188 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~-----GNW~~IA~~Vgtkt~~ec~~hy~~~yi~  188 (497)
                      +....||.+|+.+|+++|.+||.     ++|..||.+|++||..||+.||.+++..
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            44678999999999999999996     7899999999999999999999988754


No 11 
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.96  E-value=9.6e-10  Score=85.17  Aligned_cols=48  Identities=19%  Similarity=0.406  Sum_probs=44.8

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      +....||.+|+.+|+++|.+||.++|..||.+|++||..||+.||.++
T Consensus         6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV   53 (60)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence            446789999999999999999988999999999999999999999865


No 12 
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89  E-value=2.5e-09  Score=85.36  Aligned_cols=48  Identities=19%  Similarity=0.398  Sum_probs=44.9

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      +-...||.+|+.+|+++|..||.+||..||.+|++||..||+.||.++
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~   54 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW   54 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999999999875


No 13 
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86  E-value=3.4e-09  Score=85.17  Aligned_cols=48  Identities=17%  Similarity=0.448  Sum_probs=44.6

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      +....||.+|+.+|++++..|| .+|..||.+|++||..||+.||..++
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~r~~~~l   54 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYF   54 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            4467999999999999999999 59999999999999999999998775


No 14 
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.86  E-value=2.8e-09  Score=84.10  Aligned_cols=46  Identities=22%  Similarity=0.580  Sum_probs=43.0

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCChhHHHHhhC--CCCHHHHHHHHHhh
Q 010935          140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV  185 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vg--tkt~~ec~~hy~~~  185 (497)
                      ...||.+|+.+|+++|++||.++|..||++++  +||..||+++|.++
T Consensus        11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl   58 (64)
T 3sjm_A           11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM   58 (64)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            46899999999999999999999999999976  89999999999875


No 15 
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.85  E-value=2.8e-09  Score=84.92  Aligned_cols=48  Identities=23%  Similarity=0.481  Sum_probs=44.8

Q ss_pred             CCCCCcchhHHHHHHHHHHcCCCChhHHHHhhC--CCCHHHHHHHHHhhc
Q 010935          139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNVY  186 (497)
Q Consensus       139 ~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vg--tkt~~ec~~hy~~~y  186 (497)
                      -...||.+|+.+|+++|+.||.++|..||.+++  +||..||+.+|.++-
T Consensus         9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l   58 (69)
T 1ity_A            9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   58 (69)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence            357899999999999999999999999999999  999999999998764


No 16 
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=98.85  E-value=6.9e-10  Score=84.18  Aligned_cols=46  Identities=37%  Similarity=0.921  Sum_probs=40.0

Q ss_pred             CcCCccccccccccCCCceEEcCCCCCcccchhcccccccccCCCCCCCccccC
Q 010935           79 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD  132 (497)
Q Consensus        79 ~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CFs~G~e~~~Hk~~H~Y~vi~  132 (497)
                      +...+.||+|++++ + .||+|++|+|||||..||..+.    |  .|++..|.
T Consensus         3 ~~~~~~Cd~C~~~i-g-~R~~C~~C~dyDLC~~C~~~~~----H--~H~m~~~~   48 (52)
T 1tot_A            3 DRFVYTCNECKHHV-E-TRWHCTVCEDYDLCINCYNTKS----H--THKMVKWG   48 (52)
T ss_dssp             CSSCEEETTTTEEE-S-SEEEESSSSSCEECHHHHHHHC----C--CSSEEEEC
T ss_pred             CcCEEECCCCCCCC-c-ceEEcCCCCCchhHHHHHhCCC----C--CCceEEec
Confidence            34678999999996 5 8999999999999999999975    6  69888774


No 17 
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.81  E-value=3.8e-09  Score=85.40  Aligned_cols=46  Identities=26%  Similarity=0.496  Sum_probs=43.0

Q ss_pred             CCCCcchhHHHHHHHHHHcCC---CChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~---GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      ...||++|+.+|.+||..|+.   ++|+.||.+||+||++||+.||..+
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l   56 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            468999999999999999986   5799999999999999999999877


No 18 
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.80  E-value=2.8e-09  Score=90.15  Aligned_cols=59  Identities=25%  Similarity=0.534  Sum_probs=49.5

Q ss_pred             CCCCcchhHHHHHHHHHHcCC---CChhHHHHhhCCCCHHHHHHHHHhh-----ccCCCCCCCCCCc
Q 010935          140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV-----YMNSPFFPLPDMS  198 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~---GNW~~IA~~Vgtkt~~ec~~hy~~~-----yi~~~~~plp~~~  198 (497)
                      ...||.+|+.+|++|+.+||.   .+|..||.+|++||..||+.||..+     .|++...|+|...
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~   74 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYR   74 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence            468999999999999999985   4599999999999999999999987     6777778888764


No 19 
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.79  E-value=2.9e-09  Score=86.24  Aligned_cols=51  Identities=27%  Similarity=0.497  Sum_probs=45.0

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCC---CChhHHHHhhCCCCHHHHHHHHHhhccCC
Q 010935          138 LICPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNVYMNS  189 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~---GNW~~IA~~Vgtkt~~ec~~hy~~~yi~~  189 (497)
                      +....||.+|+.+|++||.+||.   .+|..||.+|++||..||+.||..+ +.+
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d   69 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSG   69 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSS
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHc
Confidence            34678999999999999999994   4799999999999999999999865 444


No 20 
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65  E-value=4.2e-08  Score=77.36  Aligned_cols=47  Identities=28%  Similarity=0.554  Sum_probs=41.9

Q ss_pred             CCCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          137 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       137 p~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      .+....||.+|+.+|+++++.|| .+|..||..+| ||..||+.||..+
T Consensus         6 ~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~~~g-Rt~~qcr~Rw~~~   52 (66)
T 2din_A            6 SGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG-RTAAQCLEHYEFL   52 (66)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhcccC-cCHHHHHHHHHHH
Confidence            34567899999999999999999 49999999555 9999999999876


No 21 
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.05  E-value=4.1e-09  Score=88.29  Aligned_cols=50  Identities=30%  Similarity=0.486  Sum_probs=45.5

Q ss_pred             CCCCCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          135 SFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       135 ~~p~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      +.++....||.+|+.+|++++..|| .+|..||.+|++||..||+.||..+
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~gRt~~q~k~r~~~~   60 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNY   60 (89)
Confidence            4456678999999999999999999 5999999999999999999999854


No 22 
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.60  E-value=4.4e-08  Score=81.14  Aligned_cols=45  Identities=16%  Similarity=0.355  Sum_probs=42.4

Q ss_pred             CCcchhHHHHHHHHHHcCCCChhHHHHh----hCCCCHHHHHHHHHhhc
Q 010935          142 DWNADDEILLLEGIEMYGLGNWAEIAEH----VGTKTKELCIEHYTNVY  186 (497)
Q Consensus       142 ~Wta~EEl~LLeaie~yG~GNW~~IA~~----Vgtkt~~ec~~hy~~~y  186 (497)
                      .||.+||..|++||++||.|+|..|+..    +.+||..+|+++|.++.
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnll   50 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV   50 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence            6999999999999999999999999996    78999999999998864


No 23 
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.58  E-value=5e-08  Score=83.96  Aligned_cols=46  Identities=20%  Similarity=0.469  Sum_probs=43.2

Q ss_pred             CCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          141 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       141 ~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      ..||.+|+.+|+++|+.||.+||..||.+|++||+.||+.+|.++.
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L   47 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI   47 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence            4799999999999999999889999999999999999999998753


No 24 
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.58  E-value=4.8e-08  Score=83.50  Aligned_cols=47  Identities=23%  Similarity=0.564  Sum_probs=44.2

Q ss_pred             CCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       139 ~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      ....||.+|+.+|+++|+.||.+||..||.+|++||+.||+.||.++
T Consensus         3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~   49 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH   49 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence            35689999999999999999988999999999999999999999876


No 25 
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.51  E-value=6.9e-08  Score=85.97  Aligned_cols=47  Identities=19%  Similarity=0.377  Sum_probs=44.1

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      ...||.+|+.+|+++|+.||.+||..||.+|++||+.||+.||.++.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l   48 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL   48 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence            35799999999999999999999999999999999999999998854


No 26 
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.49  E-value=1.6e-07  Score=83.21  Aligned_cols=49  Identities=24%  Similarity=0.590  Sum_probs=45.1

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      +....||.+|+.+|+++|+.||.++|..||.+|++||..+|+.||.++.
T Consensus        25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l   73 (128)
T 1h8a_C           25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL   73 (128)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence            3467899999999999999999889999999999999999999998753


No 27 
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48  E-value=1.5e-07  Score=73.35  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=41.3

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHh
Q 010935          140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN  184 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~  184 (497)
                      ...||.+|..+|++|+.+|| .+|..||.+|++||..||+.||..
T Consensus        12 ~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~   55 (61)
T 2eqr_A           12 MNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYL   55 (61)
T ss_dssp             CCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHH
Confidence            36899999999999999999 899999999999999999999864


No 28 
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.41  E-value=3.3e-07  Score=74.12  Aligned_cols=46  Identities=13%  Similarity=0.129  Sum_probs=42.3

Q ss_pred             CCCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHh
Q 010935          137 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN  184 (497)
Q Consensus       137 p~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~  184 (497)
                      .+....||.+|+.+|++++..|| .+|..||+++ +||..+|+.+|..
T Consensus        20 ~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~   65 (73)
T 2llk_A           20 RNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL   65 (73)
T ss_dssp             CCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH
Confidence            45578999999999999999999 6799999999 9999999999974


No 29 
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.38  E-value=3.9e-07  Score=80.62  Aligned_cols=48  Identities=15%  Similarity=0.376  Sum_probs=44.1

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      .-...||.+|+.+|+++|+.||. ||..||.+|++||..||+.||.++.
T Consensus         9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A            9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYL   56 (126)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence            34678999999999999999995 9999999999999999999998764


No 30 
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.37  E-value=4.2e-07  Score=87.69  Aligned_cols=49  Identities=18%  Similarity=0.470  Sum_probs=44.6

Q ss_pred             CCCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          137 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       137 p~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      +-....||.+|..++++|+..|| .||..||++|||||..||+.||.++.
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~k  178 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR  178 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34467899999999999999999 89999999999999999999998653


No 31 
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.35  E-value=4.8e-07  Score=77.21  Aligned_cols=47  Identities=19%  Similarity=0.497  Sum_probs=43.4

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      +....||.+|+.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus        54 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~  100 (105)
T 1gv2_A           54 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST  100 (105)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3467899999999999999999 7999999999999999999999754


No 32 
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.35  E-value=6.2e-07  Score=77.04  Aligned_cols=47  Identities=17%  Similarity=0.488  Sum_probs=43.4

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      +....||.+|+.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus        51 i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l   97 (107)
T 2k9n_A           51 LRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMI   97 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999 7999999999999999999999764


No 33 
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.30  E-value=7.1e-07  Score=78.91  Aligned_cols=47  Identities=26%  Similarity=0.551  Sum_probs=43.3

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      +....||.+|+.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus        60 ~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l  106 (126)
T 3osg_A           60 ISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTI  106 (126)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3456899999999999999999 8999999999999999999999764


No 34 
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.29  E-value=7.8e-07  Score=78.64  Aligned_cols=47  Identities=17%  Similarity=0.328  Sum_probs=43.9

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCChhHHHHhh----CCCCHHHHHHHHHhhc
Q 010935          140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY  186 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GNW~~IA~~V----gtkt~~ec~~hy~~~y  186 (497)
                      ...||.+|+..|++||++||.|+|..|+.+.    .+||..+|+++|.++.
T Consensus        31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll   81 (122)
T 2roh_A           31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV   81 (122)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            5789999999999999999999999999986    6899999999998875


No 35 
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.27  E-value=6.6e-07  Score=77.18  Aligned_cols=49  Identities=14%  Similarity=0.292  Sum_probs=44.7

Q ss_pred             CCCCCcchhHHHHHHHHHHcCCCChhHHHHhh----CCCCHHHHHHHHHhhcc
Q 010935          139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVYM  187 (497)
Q Consensus       139 ~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~V----gtkt~~ec~~hy~~~yi  187 (497)
                      -...||.+|+..|++||++||.|+|..|+...    .+||..+|+++|.++.-
T Consensus        12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk   64 (105)
T 2aje_A           12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH   64 (105)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            35789999999999999999999999999976    68999999999998763


No 36 
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.24  E-value=1.6e-06  Score=69.87  Aligned_cols=45  Identities=18%  Similarity=0.426  Sum_probs=40.6

Q ss_pred             CCCCcchhHHHHHHHHHHcCC---CChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~---GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      ...||.+|+.+|..|+.+|+-   +.|+.||.++ +||.+||+.||..+
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L   55 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   55 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH
Confidence            468999999999999999984   4599999999 59999999999875


No 37 
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.24  E-value=1.1e-06  Score=78.27  Aligned_cols=47  Identities=13%  Similarity=0.381  Sum_probs=43.7

Q ss_pred             CCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       139 ~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      ....||.+|+.+|++++..|| ++|..||.+|++||..+|+.||..+.
T Consensus        53 ~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l   99 (131)
T 3zqc_A           53 VKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSI   99 (131)
T ss_dssp             CCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            356899999999999999999 89999999999999999999998764


No 38 
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.21  E-value=1.5e-06  Score=76.85  Aligned_cols=47  Identities=19%  Similarity=0.504  Sum_probs=43.3

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      +-...||.+|+.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus        77 ~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~  123 (128)
T 1h8a_C           77 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNST  123 (128)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999 7999999999999999999999754


No 39 
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.19  E-value=1.1e-06  Score=77.64  Aligned_cols=48  Identities=17%  Similarity=0.340  Sum_probs=44.3

Q ss_pred             CCCCCcchhHHHHHHHHHHcCCCChhHHHHhh----CCCCHHHHHHHHHhhc
Q 010935          139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY  186 (497)
Q Consensus       139 ~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~V----gtkt~~ec~~hy~~~y  186 (497)
                      -...||.+|+..|+++|++||.|+|..|+.+.    .+||..+|+++|.++-
T Consensus        16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll   67 (121)
T 2juh_A           16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV   67 (121)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            35799999999999999999999999999996    6899999999998865


No 40 
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.18  E-value=1.9e-06  Score=78.86  Aligned_cols=48  Identities=25%  Similarity=0.580  Sum_probs=44.5

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      +....||.+|+.+|++++..||.++|..||.+|++||..+|+.+|.++
T Consensus        56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~  103 (159)
T 1h89_C           56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH  103 (159)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred             cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence            346789999999999999999988999999999999999999999875


No 41 
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04  E-value=5.6e-06  Score=64.87  Aligned_cols=44  Identities=25%  Similarity=0.449  Sum_probs=40.9

Q ss_pred             CCCCCcchhHHHHHHHHHHcCCCChhHHHHh-hCCCCHHHHHHHHH
Q 010935          139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYT  183 (497)
Q Consensus       139 ~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~-Vgtkt~~ec~~hy~  183 (497)
                      ....||++|-.++++|+.+|| -||..|+.+ |++||..||+.+|.
T Consensus         8 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY   52 (63)
T 2yqk_A            8 IEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYY   52 (63)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHh
Confidence            457899999999999999999 799999996 99999999999885


No 42 
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.01  E-value=4.9e-06  Score=88.49  Aligned_cols=47  Identities=19%  Similarity=0.507  Sum_probs=43.7

Q ss_pred             CCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       139 ~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      ....||.+|..++++||.+|| .||..||++|||||..||+.||.++.
T Consensus       379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            457899999999999999999 89999999999999999999998654


No 43 
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.92  E-value=1e-05  Score=74.04  Aligned_cols=47  Identities=19%  Similarity=0.497  Sum_probs=43.5

Q ss_pred             CCCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          138 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       138 ~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      +-...||.+|+.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus       108 ~~~~~WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~gRt~~~~knr~~~~  154 (159)
T 1h89_C          108 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST  154 (159)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred             ccccCCChHHHHHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999 7999999999999999999999754


No 44 
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.91  E-value=2.4e-06  Score=68.79  Aligned_cols=44  Identities=20%  Similarity=0.409  Sum_probs=39.6

Q ss_pred             CCCCcchhHHHHHHHHHHcCCC---ChhHHHHhhCCCCHHHHHHHHH
Q 010935          140 CPDWNADDEILLLEGIEMYGLG---NWAEIAEHVGTKTKELCIEHYT  183 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~G---NW~~IA~~Vgtkt~~ec~~hy~  183 (497)
                      ...||.+|..+|-.||.+|+-+   .|+.||..||+||++||+.||.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            4689999999999999999865   7999999999999999999994


No 45 
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.81  E-value=2.1e-05  Score=62.95  Aligned_cols=44  Identities=27%  Similarity=0.496  Sum_probs=40.7

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCChhHHHHh-hCCCCHHHHHHHHHh
Q 010935          140 CPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYTN  184 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GNW~~IA~~-Vgtkt~~ec~~hy~~  184 (497)
                      ...||++|-.++.+|+.+|| -||..|+.+ |++||..||+.+|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            46899999999999999999 799999995 999999999999963


No 46 
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.69  E-value=3.9e-05  Score=64.80  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=40.9

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHH
Q 010935          140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYT  183 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~  183 (497)
                      ...||.+|..++.+++..|| .||..||.+|++||..||+.+|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHh
Confidence            46899999999999999999 89999999999999999999985


No 47 
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.64  E-value=7.1e-05  Score=58.45  Aligned_cols=46  Identities=15%  Similarity=0.265  Sum_probs=41.4

Q ss_pred             CCCCCcchhHHHHHHHHHHcCCCChhHHHH---hhCCCCHHHHHHHHHhh
Q 010935          139 ICPDWNADDEILLLEGIEMYGLGNWAEIAE---HVGTKTKELCIEHYTNV  185 (497)
Q Consensus       139 ~~~~Wta~EEl~LLeaie~yG~GNW~~IA~---~Vgtkt~~ec~~hy~~~  185 (497)
                      ....||.+|+..|++||++||- +|..|+.   ++..||.-..+.+|.++
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L   55 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL   55 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHH
Confidence            3578999999999999999995 9999994   66789999999999876


No 48 
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.32  E-value=0.00013  Score=71.06  Aligned_cols=47  Identities=11%  Similarity=0.182  Sum_probs=42.5

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCC-----hhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          140 CPDWNADDEILLLEGIEMYGLGN-----WAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GN-----W~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      ...||.+|+..||+++.++|-.+     |..||.++.+||..+|+.||..+-
T Consensus         8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L   59 (246)
T 1ign_A            8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYL   59 (246)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            56899999999999999998543     999999999999999999998753


No 49 
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=96.98  E-value=0.00037  Score=60.29  Aligned_cols=38  Identities=18%  Similarity=0.135  Sum_probs=30.1

Q ss_pred             ccCCCCCCCCCCC--CCCCCCCcccccCCCccccCccccC
Q 010935          459 RKDSNSNSRPSGQ--ASSSHVNDLYIMGFNETQLLSEAVS  496 (497)
Q Consensus       459 ~~~~~~~~~~~~~--~~~~~a~~l~i~g~pG~e~Ls~~~~  496 (497)
                      |.+.+++++.+..  .+|++++||||+++||++|||++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~r~~~~~ldi~~~pg~~LLs~~E~   46 (108)
T 2cuj_A            7 GIDSGLSPSVLMASNSGRRSAPPLNLTGLPGTEKLNEKEK   46 (108)
T ss_dssp             CCCCCCCCCCCCCCCCCCSSCCCCCCTTSTTTTTSCHHHH
T ss_pred             ccccCCCccccccCCCCCCCCCccCccCCCCchhcCHHHH
Confidence            4444555555443  7899999999999999999999985


No 50 
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.07  E-value=0.0042  Score=61.72  Aligned_cols=32  Identities=28%  Similarity=0.724  Sum_probs=28.5

Q ss_pred             CCCCCCCcchhHHHHHHHHHHcCCCChhHHHH
Q 010935          137 PLICPDWNADDEILLLEGIEMYGLGNWAEIAE  168 (497)
Q Consensus       137 p~~~~~Wta~EEl~LLeaie~yG~GNW~~IA~  168 (497)
                      +-+.-.|+++|+..||-||..||||+|+.|-.
T Consensus       165 ~~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          165 QNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             TTSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            34557899999999999999999999999965


No 51 
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.93  E-value=0.012  Score=49.56  Aligned_cols=45  Identities=13%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCChhHHHHhh-----CCCCHHHHHHHHHhh
Q 010935          140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHV-----GTKTKELCIEHYTNV  185 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GNW~~IA~~V-----gtkt~~ec~~hy~~~  185 (497)
                      ..+||.+|+-.|++.+++|| ..|--|++..     +.||.++.+.+|..+
T Consensus        30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v   79 (93)
T 3hm5_A           30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence            37999999999999999999 6899999998     479999999999764


No 52 
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.87  E-value=0.0065  Score=46.84  Aligned_cols=46  Identities=11%  Similarity=0.245  Sum_probs=40.5

Q ss_pred             CCCCcchhHHHHHHHHHHc--------CCCChhHHHH-hhCCCCHHHHHHHHHhh
Q 010935          140 CPDWNADDEILLLEGIEMY--------GLGNWAEIAE-HVGTKTKELCIEHYTNV  185 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~y--------G~GNW~~IA~-~Vgtkt~~ec~~hy~~~  185 (497)
                      +..||++|+..|++.|..|        |.--|+++++ .+..+|-..|++||.+.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~   56 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH   56 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHH
Confidence            3579999999999999999        4334999999 79999999999999984


No 53 
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.80  E-value=0.0072  Score=57.14  Aligned_cols=31  Identities=39%  Similarity=0.717  Sum_probs=27.7

Q ss_pred             CCCCCcchhHHHHHHHHHHcCCCChhHHHHh
Q 010935          139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEH  169 (497)
Q Consensus       139 ~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~  169 (497)
                      +...||.+|+..||-||.+||+|+|+.|-.-
T Consensus       133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D  163 (211)
T 4b4c_A          133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD  163 (211)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence            3567999999999999999999999999663


No 54 
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.56  E-value=0.018  Score=48.01  Aligned_cols=45  Identities=16%  Similarity=0.341  Sum_probs=41.2

Q ss_pred             CCcchhHHHHHHHHHHcCC--CChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          142 DWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       142 ~Wta~EEl~LLeaie~yG~--GNW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      -||.+++..+|.++++-|.  .-|..||..+|.||+.|+.++|.++.
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            5999999999999999984  36999999999999999999998763


No 55 
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.51  E-value=0.01  Score=59.88  Aligned_cols=48  Identities=29%  Similarity=0.455  Sum_probs=42.6

Q ss_pred             CCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHhhccCC
Q 010935          141 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNS  189 (497)
Q Consensus       141 ~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~~yi~~  189 (497)
                      .+||-.+-..++.|+++||-++|+.||..|++||++|++ .|.+.|...
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~-~Y~~vFw~r  158 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVI-EYNAVFWER  158 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHH-HHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHH-HHHHHHHHh
Confidence            489999999999999999999999999999999999995 555666554


No 56 
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=94.64  E-value=0.016  Score=47.33  Aligned_cols=45  Identities=16%  Similarity=0.405  Sum_probs=37.2

Q ss_pred             CCCcchhHHHHHHHHHHcCC---------CChhHHHHhhC----CCCHHHHHHHHHhh
Q 010935          141 PDWNADDEILLLEGIEMYGL---------GNWAEIAEHVG----TKTKELCIEHYTNV  185 (497)
Q Consensus       141 ~~Wta~EEl~LLeaie~yG~---------GNW~~IA~~Vg----tkt~~ec~~hy~~~  185 (497)
                      ..||.+|.++||++......         .-|+.||+.|.    .+|+.||+..|.++
T Consensus         5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL   62 (86)
T 2ebi_A            5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL   62 (86)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            57999999999998764221         15999999986    69999999999775


No 57 
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.75  E-value=0.098  Score=41.00  Aligned_cols=48  Identities=15%  Similarity=0.212  Sum_probs=41.3

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCC--hhHHHHhhC--CCCHHHHHHHHHhhcc
Q 010935          140 CPDWNADDEILLLEGIEMYGLGN--WAEIAEHVG--TKTKELCIEHYTNVYM  187 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GN--W~~IA~~Vg--tkt~~ec~~hy~~~yi  187 (497)
                      +-.||.+....+++||+.+|...  |..|.+.|+  +-|..++..|..+|.+
T Consensus         7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999432  789999988  5799999999988754


No 58 
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.35  E-value=0.14  Score=43.02  Aligned_cols=45  Identities=13%  Similarity=0.219  Sum_probs=40.8

Q ss_pred             CCCCcchhHHHHHHHHHHcCCCChhHHHHhhC-----CCCHHHHHHHHHhh
Q 010935          140 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-----TKTKELCIEHYTNV  185 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vg-----tkt~~ec~~hy~~~  185 (497)
                      ..+||-+|+-.|++.++.|+ ..|--|++.-.     .||.++.+.+|..+
T Consensus        30 ~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            47999999999999999999 68999999864     69999999999765


No 59 
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=92.78  E-value=0.02  Score=61.04  Aligned_cols=45  Identities=16%  Similarity=0.416  Sum_probs=0.0

Q ss_pred             CCCCCcchhHHHHHHHHHHcCCCChhHHHHhhCCCCHHHHHHHHHh
Q 010935          139 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN  184 (497)
Q Consensus       139 ~~~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vgtkt~~ec~~hy~~  184 (497)
                      +...||.+|..++.+++..|| .||..|+.+|++||..+|..+|..
T Consensus       188 ~~d~WT~eE~~lFe~al~~yG-KdF~~I~~~lp~Ksv~e~V~yYY~  232 (482)
T 2xag_B          188 FPDEWTVEDKVLFEQAFSFHG-KTFHRIQQMLPDKSIASLVKFYYS  232 (482)
T ss_dssp             ----------------------------------------------
T ss_pred             cccccCHHHHHHHHHHHHHcC-ccHHHHHHHcCCCCHHHHHHHhcc
Confidence            446899999999999999999 899999999999999999988854


No 60 
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=91.86  E-value=0.021  Score=45.22  Aligned_cols=44  Identities=18%  Similarity=0.336  Sum_probs=39.4

Q ss_pred             CCCcchhHHHHHHHHHHcCC--CChhHHHHhhCCCCHHHHHHHHHhh
Q 010935          141 PDWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV  185 (497)
Q Consensus       141 ~~Wta~EEl~LLeaie~yG~--GNW~~IA~~Vgtkt~~ec~~hy~~~  185 (497)
                      --||.+|+..+|..+.+-|.  .-|..||..+ +||++|+..+|.++
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L   60 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL   60 (70)
Confidence            36999999999999999984  2699999999 79999999999875


No 61 
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=89.56  E-value=0.16  Score=40.93  Aligned_cols=41  Identities=32%  Similarity=0.821  Sum_probs=31.5

Q ss_pred             ccccccC-CCceEEcCCCC---CcccchhcccccccccCCCCCCCccccC
Q 010935           87 YCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMD  132 (497)
Q Consensus        87 ~C~~~i~-~~~ri~C~~C~---d~dLC~~CFs~G~e~~~Hk~~H~Y~vi~  132 (497)
                      .|++.+. +.+.|+|..|.   ...||..||..+.    |+ .|.|.+..
T Consensus         6 ~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~----H~-gH~~~~~~   50 (75)
T 3ny3_A            6 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSI----HR-DHRYRMTT   50 (75)
T ss_dssp             CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSG----GG-GSCEEEEE
T ss_pred             ccCCcccCCCEEEECccCCCCCCeeEChHHCCCCC----cC-CceEEEEE
Confidence            4777653 66999999995   3569999999875    75 68888864


No 62 
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=89.50  E-value=0.24  Score=49.86  Aligned_cols=46  Identities=9%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             CCCCcchhHHHHHHHHHHcCC---CChhHHHH------------hhCCCCHHHHHHHHHhh
Q 010935          140 CPDWNADDEILLLEGIEMYGL---GNWAEIAE------------HVGTKTKELCIEHYTNV  185 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~---GNW~~IA~------------~Vgtkt~~ec~~hy~~~  185 (497)
                      ...||.+|+..||=++..||+   |+|+.|-.            ++.++|+.|+..|-..+
T Consensus       212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL  272 (304)
T 1ofc_X          212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL  272 (304)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence            578999999999999999999   99999974            45589999988776544


No 63 
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=89.37  E-value=0.28  Score=50.63  Aligned_cols=60  Identities=18%  Similarity=0.245  Sum_probs=50.8

Q ss_pred             CCCcchhHHHHHHHHHHcCCCChhHHHHhhC-CCCHHHHHHHHHhhccCCCCCCCCCCccccc
Q 010935          141 PDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMNSPFFPLPDMSHVVG  202 (497)
Q Consensus       141 ~~Wta~EEl~LLeaie~yG~GNW~~IA~~Vg-tkt~~ec~~hy~~~yi~~~~~plp~~~~~~~  202 (497)
                      .+||-.+=..++.|+++||-+|-+.||..|+ +||++|++ .|.+.|.... -.+.+....|+
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry-~Ei~d~erii~  184 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNI-ERIEDYEKYLK  184 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTC-SSCSCCTTTHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhh-hhhccHHHHHH
Confidence            5899999999999999999999999999998 99999999 7888887764 34556555544


No 64 
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=88.67  E-value=0.37  Score=45.25  Aligned_cols=42  Identities=12%  Similarity=0.120  Sum_probs=37.0

Q ss_pred             CCCcchhHHHHHHHHHHcC--CCChhHHHHhh--CCCCHHHHHHHH
Q 010935          141 PDWNADDEILLLEGIEMYG--LGNWAEIAEHV--GTKTKELCIEHY  182 (497)
Q Consensus       141 ~~Wta~EEl~LLeaie~yG--~GNW~~IA~~V--gtkt~~ec~~hy  182 (497)
                      .+||..|-..|+.|+.+||  .+.|++|+...  ..||.++++..|
T Consensus         8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~   53 (211)
T 4b4c_A            8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLG   53 (211)
T ss_dssp             CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHH
Confidence            6899999999999999999  68899999875  489999998644


No 65 
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=87.41  E-value=0.28  Score=40.55  Aligned_cols=32  Identities=34%  Similarity=0.769  Sum_probs=27.7

Q ss_pred             CccccccccccCCCceEEcCCCCCcccchhcccc
Q 010935           82 LYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV  115 (497)
Q Consensus        82 ~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CFs~  115 (497)
                      .+.|+.|+..+.+ .+|+|..| +|+|-+.|...
T Consensus        47 ~~~C~~C~~~~~~-~~Y~C~~C-~f~lH~~Ca~~   78 (89)
T 1v5n_A           47 VYTCDKCEEEGTI-WSYHCDEC-DFDLHAKCALN   78 (89)
T ss_dssp             SCCCTTTSCCCCS-CEEECTTT-CCCCCHHHHHC
T ss_pred             CeEeCCCCCcCCC-cEEEcCCC-CCeEcHHhcCC
Confidence            3789999998876 89999999 59999999764


No 66 
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=86.36  E-value=0.62  Score=38.14  Aligned_cols=42  Identities=29%  Similarity=0.568  Sum_probs=31.9

Q ss_pred             cccccccC-CCceEEcCCCC---CcccchhcccccccccCCCCCCCccccC
Q 010935           86 NYCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMD  132 (497)
Q Consensus        86 d~C~~~i~-~~~ri~C~~C~---d~dLC~~CFs~G~e~~~Hk~~H~Y~vi~  132 (497)
                      ..|+..+. +.+.|+|..|.   ...||..||-.+.    |. .|.|.+..
T Consensus         9 ~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~----H~-gH~~~~~~   54 (82)
T 3nis_A            9 RNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKD----HV-NHHVCTDI   54 (82)
T ss_dssp             SCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGG----GT-TSCEEEEE
T ss_pred             CCCCCcccCCCEEEEeeccCCCCCceEchhhCCCCC----cC-CceEEEEE
Confidence            35777663 56899999995   3569999999865    75 78888753


No 67 
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=74.95  E-value=2.8  Score=43.24  Aligned_cols=45  Identities=11%  Similarity=0.220  Sum_probs=37.7

Q ss_pred             CCCCcchhHHHHHHHHHHcCC---CChhHHHHhh------------CCCCHHHHHHHHHh
Q 010935          140 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHV------------GTKTKELCIEHYTN  184 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG~---GNW~~IA~~V------------gtkt~~ec~~hy~~  184 (497)
                      ...||.+|+.-||=++..||+   |||+.|-..|            .++|+.|+..|-..
T Consensus       228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t  287 (374)
T 2y9y_A          228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT  287 (374)
T ss_dssp             CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence            568999999999999999999   9999996653            47999888655433


No 68 
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=69.42  E-value=3.1  Score=32.62  Aligned_cols=32  Identities=41%  Similarity=0.886  Sum_probs=26.3

Q ss_pred             CCccccccccccCCCceEEcCCCCCcccchhccccc
Q 010935           81 ALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVG  116 (497)
Q Consensus        81 ~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CFs~G  116 (497)
                      ....|.+|..+-+    ++|..|.+-..|..||-.+
T Consensus         7 e~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~   38 (67)
T 2d8v_A            7 GLPWCCICNEDAT----LRCAGCDGDLYCARCFREG   38 (67)
T ss_dssp             CCSSCTTTCSCCC----EEETTTTSEEECSSHHHHH
T ss_pred             CCCeeEEeCCCCe----EEecCCCCceehHHHHHHH
Confidence            4567999998854    7999998655699999986


No 69 
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=68.36  E-value=12  Score=29.17  Aligned_cols=53  Identities=21%  Similarity=0.458  Sum_probs=36.7

Q ss_pred             CCCCCCcCCccccccccccCCCceEEcCCCCCcccchhcccccccccCCCCCCCccccCC
Q 010935           74 GAGEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN  133 (497)
Q Consensus        74 ~~~e~~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CFs~G~e~~~Hk~~H~Y~vi~~  133 (497)
                      +.+..+.....|..|++.+.- +-++| .|.. .+|..    .+++..|.-..+|+-+..
T Consensus         7 ~~~~~~~~~~rC~~C~kkvgl-~~f~C-rCg~-~FC~~----HR~~e~H~C~fDyk~~gr   59 (64)
T 1wg2_A            7 GPSRPVRPNNRCFSCNKKVGV-MGFKC-KCGS-TFCGS----HRYPEKHECSFDFKEVGS   59 (64)
T ss_dssp             CSSCCSCCSCSCTTTCCCCTT-SCEEC-TTSC-EECSS----SCSSTTTTCCCCCSCSCC
T ss_pred             CCCCCCCcCCcChhhCCcccc-cCeEe-ecCC-Eeccc----CCCccccCCCcchhHHhH
Confidence            344455567799999997653 56999 7874 45643    566777888888876644


No 70 
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.59  E-value=2.2  Score=35.49  Aligned_cols=33  Identities=27%  Similarity=0.815  Sum_probs=27.6

Q ss_pred             Ccccccccccc----CCCceEEcCCCCCcccchhcccc
Q 010935           82 LYHCNYCNKDI----TGKIRIKCAVCPDFDLCIECFSV  115 (497)
Q Consensus        82 ~~~Cd~C~~~i----~~~~ri~C~~C~d~dLC~~CFs~  115 (497)
                      ...|.+|+-++    .+.+++-|.+|. |-+|-.||-.
T Consensus        16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~-FPvCrpCyEY   52 (93)
T 1weo_A           16 GQFCEICGDQIGLTVEGDLFVACNECG-FPACRPCYEY   52 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSC-CCCCHHHHHH
T ss_pred             CCccccccCccccCCCCCEEEeeeccC-ChhhHHHHHH
Confidence            35799999874    456999999997 9999999976


No 71 
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=60.86  E-value=21  Score=28.54  Aligned_cols=50  Identities=20%  Similarity=0.411  Sum_probs=35.6

Q ss_pred             CCCcCCccccccccccCCCceEEcCCCCCcccchhcccccccccCCCCCCCccccCC
Q 010935           77 EGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN  133 (497)
Q Consensus        77 e~~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CFs~G~e~~~Hk~~H~Y~vi~~  133 (497)
                      ..+.....|..|.+.+.- +-++| .|.. .+|..    .+++..|.-..+|+-+..
T Consensus        20 ~~k~~~~RC~~C~kkvgL-~~f~C-rCg~-~FCs~----HRy~e~H~C~fDyk~~gr   69 (74)
T 1wfp_A           20 PPKSTATRCLSCNKKVGV-TGFKC-RCGS-TFCGT----HRYPESHECQFDFKGVAS   69 (74)
T ss_dssp             CTTCCCCBCSSSCCBCTT-TCEEC-TTSC-EECTT----TCSTTTSCCCSCTTSCCC
T ss_pred             cCcccCccchhhcCcccc-cceEe-ccCC-Eeccc----cCCCcCCCCcCchhHHhH
Confidence            345667899999987654 57999 7874 46654    456677888888876543


No 72 
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.79  E-value=3.8  Score=31.40  Aligned_cols=30  Identities=27%  Similarity=0.729  Sum_probs=24.4

Q ss_pred             cccccccccCCCceEEcCCCCCcccchhccc
Q 010935           84 HCNYCNKDITGKIRIKCAVCPDFDLCIECFS  114 (497)
Q Consensus        84 ~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CFs  114 (497)
                      .|.+|.+.+....+|+|..|. ..+|..|=.
T Consensus        17 ~C~~C~~~~~~~~~y~C~~C~-~~FC~dCD~   46 (59)
T 1z60_A           17 FCYGCQGELKDQHVYVCAVCQ-NVFCVDCDV   46 (59)
T ss_dssp             EETTTTEECTTSEEECCTTTT-CCBCHHHHH
T ss_pred             cccccCcccCCCccEECCccC-cCcccchhH
Confidence            599999998665679999997 568999843


No 73 
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=56.12  E-value=19  Score=28.04  Aligned_cols=49  Identities=14%  Similarity=0.327  Sum_probs=34.9

Q ss_pred             CCcCCccccccccccCCCceEEcCCCCCcccchhcccccccccCCCCCCCccccCC
Q 010935           78 GKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN  133 (497)
Q Consensus        78 ~~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CFs~G~e~~~Hk~~H~Y~vi~~  133 (497)
                      .+.....|..|++.+.- +-++| .|.. .+|..    .+++..|.-..+|+-+..
T Consensus        11 ~k~~~~rC~~C~kkvgl-~~f~C-rCg~-~FC~~----HRy~e~H~C~fDyk~~gr   59 (64)
T 1wfh_A           11 PPQRPNRCTVCRKRVGL-TGFMC-RCGT-TFCGS----HRYPEVHGCTFDFKSAGS   59 (64)
T ss_dssp             CCSSCCCCTTTCCCCCT-TCEEC-SSSC-EECTT----TCSTTTTTCCCCCSCCCC
T ss_pred             CCCcCCcChhhCCccCc-cCEEe-ecCC-Eeccc----cCCcccCCCCchhhHHHH
Confidence            35567889999997653 56999 6874 46643    566777888888876643


No 74 
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.63  E-value=27  Score=26.04  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=22.5

Q ss_pred             hhHHHHHHHHHHcCCCChhHHHHhhCC
Q 010935          146 DDEILLLEGIEMYGLGNWAEIAEHVGT  172 (497)
Q Consensus       146 ~EEl~LLeaie~yG~GNW~~IA~~Vgt  172 (497)
                      -|...+.++++.+| ||+..+|..+|-
T Consensus        19 ~E~~~i~~aL~~~~-gn~~~aA~~LGi   44 (63)
T 3e7l_A           19 FEKIFIEEKLREYD-YDLKRTAEEIGI   44 (63)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC-CCHHHHHHHHCc
Confidence            46667889999999 999999999983


No 75 
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=36.41  E-value=35  Score=27.85  Aligned_cols=37  Identities=16%  Similarity=0.581  Sum_probs=30.5

Q ss_pred             CcCCccccccccccCCCceEEcCCCCCcccchhcccc
Q 010935           79 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV  115 (497)
Q Consensus        79 ~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CFs~  115 (497)
                      ......|..|...+..+-+++|..-+.-.+|-.|--.
T Consensus        12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~   48 (93)
T 2cs3_A           12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE   48 (93)
T ss_dssp             SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred             CCCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence            3577899999999988889999987777788888654


No 76 
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.35  E-value=70  Score=25.52  Aligned_cols=47  Identities=17%  Similarity=0.336  Sum_probs=33.3

Q ss_pred             cCCccccccccccCCCceEEcCCCCCcccchhcccccccccCCCCCCCccccCC
Q 010935           80 RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN  133 (497)
Q Consensus        80 ~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CFs~G~e~~~Hk~~H~Y~vi~~  133 (497)
                      .....|..|++.+.- .-++|. |.. .+|..    .+++..|.-..+|+-+..
T Consensus        23 ~~~nRC~~CrKkvgL-~gf~Cr-Cg~-~FCs~----HRy~e~H~C~fDyk~~gr   69 (74)
T 1wfl_A           23 PKKNRCFMCRKKVGL-TGFDCR-CGN-LFCGL----HRYSDKHNCPYDYKAEAS   69 (74)
T ss_dssp             SCTTBCSSSCCBCGG-GCEECT-TSC-EECSS----SCSTTTTTCCCCGGGTSS
T ss_pred             CcCCcChhhCCcccc-cCeecC-CCC-Eechh----cCCCccCCCcchhhhhch
Confidence            455689999996543 458999 874 35643    567778888888876643


No 77 
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=33.75  E-value=20  Score=28.02  Aligned_cols=17  Identities=24%  Similarity=0.270  Sum_probs=15.0

Q ss_pred             HHHHHHHhCccchHHHH
Q 010935          401 DLKEARAAGCRTSAEAD  417 (497)
Q Consensus       401 ~LqeyR~~Gittl~e~~  417 (497)
                      -|..|++.||+|+++++
T Consensus        61 Il~~W~~~gi~T~e~a~   77 (78)
T 2zc2_A           61 ILRNWRHEGISTLRQVE   77 (78)
T ss_dssp             HHHHHHHTTCCSHHHHC
T ss_pred             HHHHHHHcCCCCHHHHh
Confidence            47899999999999874


No 78 
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.24  E-value=38  Score=28.76  Aligned_cols=36  Identities=17%  Similarity=0.392  Sum_probs=27.8

Q ss_pred             HHHHHHHHcCCC--------ChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          150 LLLEGIEMYGLG--------NWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       150 ~LLeaie~yG~G--------NW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      .|-.+|...| |        .|.+||..+|-......+.||.++-
T Consensus        53 ~Ly~~V~~~G-G~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L   96 (116)
T 2li6_A           53 YLYMLVQKFG-GADQVTRTQQWSMVAQRLQISDYQQLESIYFRIL   96 (116)
T ss_dssp             HHHHHHHHHT-SHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CHHHccccCcHHHHHHHhCCChHHHHHHHHHHHH
Confidence            4556666666 4        7999999999766778888888753


No 79 
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=32.41  E-value=57  Score=31.66  Aligned_cols=25  Identities=12%  Similarity=0.224  Sum_probs=22.7

Q ss_pred             ChhHHHHhhCCCCHHHHHHHHHhhc
Q 010935          162 NWAEIAEHVGTKTKELCIEHYTNVY  186 (497)
Q Consensus       162 NW~~IA~~Vgtkt~~ec~~hy~~~y  186 (497)
                      -|+.||++..++|..-.+.+|.++-
T Consensus       173 ~fk~ia~~~P~HT~~SWRdRyrKfl  197 (246)
T 1ign_A          173 FFKHFAEEHAAHTENAWRDRFRKFL  197 (246)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHTH
T ss_pred             HHHHHHHHCCCCChhhHHHHHHHHH
Confidence            5999999999999999999998753


No 80 
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=32.15  E-value=29  Score=25.81  Aligned_cols=31  Identities=23%  Similarity=0.608  Sum_probs=20.3

Q ss_pred             ceEEcCCCCCcc-----cchhcccc--cccccCCCCCC
Q 010935           96 IRIKCAVCPDFD-----LCIECFSV--GVEVHPHKSNH  126 (497)
Q Consensus        96 ~ri~C~~C~d~d-----LC~~CFs~--G~e~~~Hk~~H  126 (497)
                      -+|+|++|..+.     -|..|+..  +-++..+|-.|
T Consensus        10 D~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~~k~~~   47 (53)
T 2cr8_A           10 DEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCSKLTH   47 (53)
T ss_dssp             CCEECSSSCCEECSSCCBCTTTCCBCCCCCCCCCCCSC
T ss_pred             ceeecccccccCCCccchhHHHHHhhcccCCCcccCcc
Confidence            678888887543     68889886  33445555444


No 81 
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.40  E-value=42  Score=27.21  Aligned_cols=35  Identities=26%  Similarity=0.498  Sum_probs=25.3

Q ss_pred             cCCccccccccccC-CCceEEcCCCCCcccchhcccc
Q 010935           80 RALYHCNYCNKDIT-GKIRIKCAVCPDFDLCIECFSV  115 (497)
Q Consensus        80 ~~~~~Cd~C~~~i~-~~~ri~C~~C~d~dLC~~CFs~  115 (497)
                      .....|..|++..+ ...+.+|-.|.. .+|..|-..
T Consensus         7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~-vfC~~Cs~~   42 (88)
T 1wfk_A            7 GMESRCYGCAVKFTLFKKEYGCKNCGR-AFCNGCLSF   42 (88)
T ss_dssp             CCCSBCTTTCCBCCSSSCEEECSSSCC-EEETTTSCE
T ss_pred             CcCCCCcCcCCcccCccccccCCCCCC-EEChhHcCC
Confidence            34457999998643 227899999984 589888654


No 82 
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=27.24  E-value=1e+02  Score=24.11  Aligned_cols=34  Identities=24%  Similarity=0.710  Sum_probs=24.2

Q ss_pred             cCCcccccccccc-CCCceEEcCCCCCcccchhcccc
Q 010935           80 RALYHCNYCNKDI-TGKIRIKCAVCPDFDLCIECFSV  115 (497)
Q Consensus        80 ~~~~~Cd~C~~~i-~~~~ri~C~~C~d~dLC~~CFs~  115 (497)
                      ...+.|++|...- .. .--.|..|. ..+|..|+..
T Consensus        28 ~~~v~C~~C~~~~~~~-A~ksCl~C~-~s~C~~hl~~   62 (78)
T 2ffw_A           28 AEKVLCQFCDQDPAQD-AVKTCVTCE-VSYCDECLKA   62 (78)
T ss_dssp             SCCCBCSSCCSSSCCB-CCEEETTTT-EEECHHHHHH
T ss_pred             CCCccCCcCCCCCCCC-CeeEccCcc-chhhhhhhHh
Confidence            3457899997532 22 445899997 4599999985


No 83 
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=25.90  E-value=25  Score=27.97  Aligned_cols=18  Identities=22%  Similarity=0.309  Sum_probs=11.4

Q ss_pred             HHHHHHHHhCccchHHHH
Q 010935          400 QDLKEARAAGCRTSAEAD  417 (497)
Q Consensus       400 ~~LqeyR~~Gittl~e~~  417 (497)
                      .-|..|++.||+|+++++
T Consensus        65 ~IL~~W~~~gi~T~e~v~   82 (83)
T 2i5u_A           65 AILKDWEQRGFKSVEERE   82 (83)
T ss_dssp             HHHHHHHHHTCCC-----
T ss_pred             HHHHHHHHcCCCCHHHHh
Confidence            348899999999999874


No 84 
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=25.73  E-value=93  Score=30.53  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=38.0

Q ss_pred             CCCCcchhHHHHHHHHHHcC--CCChhHHHHh--hCCCCHHHHHHHHHhh
Q 010935          140 CPDWNADDEILLLEGIEMYG--LGNWAEIAEH--VGTKTKELCIEHYTNV  185 (497)
Q Consensus       140 ~~~Wta~EEl~LLeaie~yG--~GNW~~IA~~--Vgtkt~~ec~~hy~~~  185 (497)
                      ..+||..|-..|+.++.+||  .+.|++|+.-  +..|+.+..+.-|..+
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l   52 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM   52 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            35799999999999999999  5789999876  3468888888766654


No 85 
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=24.78  E-value=23  Score=27.83  Aligned_cols=14  Identities=21%  Similarity=0.619  Sum_probs=11.4

Q ss_pred             CcCCcccccccccc
Q 010935           79 KRALYHCNYCNKDI   92 (497)
Q Consensus        79 ~~~~~~Cd~C~~~i   92 (497)
                      ....|.|..|+...
T Consensus        25 ~~v~Y~C~~CG~~~   38 (70)
T 1twf_L           25 ATLKYICAECSSKL   38 (70)
T ss_dssp             CCCCEECSSSCCEE
T ss_pred             ceEEEECCCCCCcc
Confidence            46889999999873


No 86 
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.67  E-value=26  Score=29.52  Aligned_cols=32  Identities=25%  Similarity=0.808  Sum_probs=19.5

Q ss_pred             cccccccccc--CCCceEEcCCCCC-cc---cchhcccc
Q 010935           83 YHCNYCNKDI--TGKIRIKCAVCPD-FD---LCIECFSV  115 (497)
Q Consensus        83 ~~Cd~C~~~i--~~~~ri~C~~C~d-~d---LC~~CFs~  115 (497)
                      ..|-.|+..+  .+ .+++|..|.. |.   +|++|-..
T Consensus        33 ~~CP~Cq~eL~~~g-~~~hC~~C~~~f~~~a~CPdC~q~   70 (101)
T 2jne_A           33 LHCPQCQHVLDQDN-GHARCRSCGEFIEMKALCPDCHQP   70 (101)
T ss_dssp             CBCSSSCSBEEEET-TEEEETTTCCEEEEEEECTTTCSB
T ss_pred             ccCccCCCcceecC-CEEECccccchhhccccCcchhhH
Confidence            4577777765  34 4666777763 32   57776543


No 87 
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=23.56  E-value=69  Score=25.95  Aligned_cols=37  Identities=19%  Similarity=0.412  Sum_probs=24.3

Q ss_pred             HHHHHHHHHcC-C------CChhHHHHhhCCC---C-HHHHHHHHHhh
Q 010935          149 ILLLEGIEMYG-L------GNWAEIAEHVGTK---T-KELCIEHYTNV  185 (497)
Q Consensus       149 l~LLeaie~yG-~------GNW~~IA~~Vgtk---t-~~ec~~hy~~~  185 (497)
                      ..|-.+|...| +      ..|.+|+..+|-.   + ..+.+.||.++
T Consensus        39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~   86 (96)
T 2jxj_A           39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI   86 (96)
T ss_dssp             HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence            34555666655 1      3799999999832   2 45667777664


No 88 
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=23.41  E-value=51  Score=33.31  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=28.1

Q ss_pred             CCccccccccccC--CCceEEcCCCCCcccchhcccccc
Q 010935           81 ALYHCNYCNKDIT--GKIRIKCAVCPDFDLCIECFSVGV  117 (497)
Q Consensus        81 ~~~~Cd~C~~~i~--~~~ri~C~~C~d~dLC~~CFs~G~  117 (497)
                      ....|..|+..+.  ....++|..|. +..|..|-....
T Consensus       356 ~~t~C~~C~~~~~g~~~qg~~C~~C~-~~~h~~C~~~~~  393 (406)
T 2vrw_B          356 ETTSCKACQMLLRGTFYQGYRCYRCR-APAHKECLGRVP  393 (406)
T ss_dssp             SCCBCTTTCCBCCSSSSCEEEETTTC-CEECGGGGGGSC
T ss_pred             CCCCCccccchhceeCCCCCCCCCCc-CccchhhhhhCC
Confidence            4468999998764  23789999997 779999988643


No 89 
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=23.27  E-value=1e+02  Score=26.13  Aligned_cols=36  Identities=25%  Similarity=0.435  Sum_probs=25.9

Q ss_pred             HHHHHHHHHcCCC--------ChhHHHHhhCCCC----HHHHHHHHHhh
Q 010935          149 ILLLEGIEMYGLG--------NWAEIAEHVGTKT----KELCIEHYTNV  185 (497)
Q Consensus       149 l~LLeaie~yG~G--------NW~~IA~~Vgtkt----~~ec~~hy~~~  185 (497)
                      ..|-.+|...| |        .|.+||..+|-.+    ....+.||.++
T Consensus        43 ~~Ly~~V~~~G-G~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~   90 (117)
T 2jrz_A           43 YSLSKIVVEEG-GYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI   90 (117)
T ss_dssp             HHHHHHHHHHT-CHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcc-CHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            45667777777 4        7999999998432    45667778765


No 90 
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=22.65  E-value=1.1e+02  Score=25.26  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=25.2

Q ss_pred             HHHHHHHHHcCCC--------ChhHHHHhhCCCC----HHHHHHHHHhh
Q 010935          149 ILLLEGIEMYGLG--------NWAEIAEHVGTKT----KELCIEHYTNV  185 (497)
Q Consensus       149 l~LLeaie~yG~G--------NW~~IA~~Vgtkt----~~ec~~hy~~~  185 (497)
                      ..|-.+|...| |        .|.+||..+|-.+    ....+.||.++
T Consensus        47 ~~Ly~~V~~~G-G~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~   94 (107)
T 2lm1_A           47 YTLHRIVQEEG-GMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI   94 (107)
T ss_dssp             HHHHHHHHHHT-CHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            44556677766 4        7999999998433    45667777764


No 91 
>3fh3_A Putative ECF-type sigma factor negative effector; putative anti-sigma W factor, MCSG, PSI, structural genomics; HET: MSE; 2.10A {Bacillus anthracis str} PDB: 3fgg_A
Probab=22.28  E-value=98  Score=28.06  Aligned_cols=43  Identities=12%  Similarity=0.297  Sum_probs=33.2

Q ss_pred             CCCCChHHH----HHHHhhchhc----------ccCChhHHHHHHHHHHHHHHHHHH
Q 010935          356 EKDLSPEER----ELCRRYDVFM----------RFHSKEDHEDLLQTVISEHRTLKR  398 (497)
Q Consensus       356 ekk~tkeEr----el~~rlk~Fa----------rf~s~eehe~li~~L~~E~~Lr~r  398 (497)
                      .-++|+++|    .+...|.||-          ..+|++||+.+++.|......+-+
T Consensus        67 ~ErLs~~eqekl~~i~~eL~PyfDKL~~~~ssk~~lt~~e~~~y~~~l~~~~~~~~~  123 (158)
T 3fh3_A           67 YDALSSEKREEMKKVSMGLQPYFDKLNGHKSSKEVLTQEEFDRYMEALMTHEIVRVK  123 (158)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHCCHHHHHHHHHHHHHhccHHHHHcCCccHhhhcCHHHHHHHHHHHHHHHHheee
Confidence            346788776    4667788885          467999999999999888776653


No 92 
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=21.78  E-value=1.1e+02  Score=26.11  Aligned_cols=36  Identities=22%  Similarity=0.417  Sum_probs=25.9

Q ss_pred             HHHHHHHHHcCCC--------ChhHHHHhhCCCC----HHHHHHHHHhh
Q 010935          149 ILLLEGIEMYGLG--------NWAEIAEHVGTKT----KELCIEHYTNV  185 (497)
Q Consensus       149 l~LLeaie~yG~G--------NW~~IA~~Vgtkt----~~ec~~hy~~~  185 (497)
                      ..|-.+|...| |        .|.+||..+|-.+    ....+.||.++
T Consensus        54 ~~Ly~~V~~~G-G~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~  101 (125)
T 2cxy_A           54 FRLYVCVKEIG-GLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY  101 (125)
T ss_dssp             HHHHHHHHHHT-SHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            45666777776 5        7999999998543    34667777765


Done!