Query 010936
Match_columns 497
No_of_seqs 444 out of 3089
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:14:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 1.9E-73 4E-78 624.3 44.0 414 46-484 20-446 (613)
2 PLN03211 ABC transporter G-25; 100.0 1.6E-69 3.4E-74 598.6 50.5 417 46-484 34-495 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-68 3.2E-73 589.5 44.9 396 68-484 37-449 (617)
4 KOG0065 Pleiotropic drug resis 100.0 5.6E-70 1.2E-74 609.2 28.2 411 51-490 787-1219(1391)
5 PLN03140 ABC transporter G fam 100.0 1.4E-67 3.1E-72 621.4 48.1 414 49-489 865-1310(1470)
6 TIGR00956 3a01205 Pleiotropic 100.0 1.5E-67 3.2E-72 622.6 46.1 421 48-484 26-509 (1394)
7 TIGR00956 3a01205 Pleiotropic 100.0 4.3E-67 9.3E-72 618.7 48.6 412 50-489 758-1192(1394)
8 PLN03140 ABC transporter G fam 100.0 1.3E-65 2.9E-70 604.7 43.7 423 48-484 128-626 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 3.2E-58 6.9E-63 514.9 29.5 402 69-484 128-548 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.3E-55 2.7E-60 412.3 22.6 217 51-283 2-224 (240)
11 COG1125 OpuBA ABC-type proline 100.0 1.1E-52 2.4E-57 399.9 22.5 227 51-307 1-235 (309)
12 COG1135 AbcC ABC-type metal io 100.0 1E-52 2.2E-57 411.1 21.9 221 51-283 1-230 (339)
13 COG1127 Ttg2A ABC-type transpo 100.0 2E-51 4.3E-56 389.5 23.7 220 49-284 6-235 (263)
14 COG1116 TauB ABC-type nitrate/ 100.0 3.1E-51 6.7E-56 392.9 23.3 204 51-271 3-207 (248)
15 COG1131 CcmA ABC-type multidru 100.0 9.6E-51 2.1E-55 409.1 27.1 220 51-287 4-229 (293)
16 COG1120 FepC ABC-type cobalami 100.0 4.8E-51 1E-55 398.0 22.6 219 51-283 2-227 (258)
17 COG1136 SalX ABC-type antimicr 100.0 2.2E-50 4.8E-55 386.2 24.7 209 52-273 2-220 (226)
18 COG3839 MalK ABC-type sugar tr 100.0 2.9E-50 6.3E-55 406.5 24.8 217 51-284 3-223 (338)
19 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 8.8E-50 1.9E-54 387.4 24.8 218 50-284 3-227 (254)
20 COG3842 PotA ABC-type spermidi 100.0 3E-50 6.5E-55 408.4 21.8 218 50-283 4-225 (352)
21 COG4555 NatA ABC-type Na+ tran 100.0 2.2E-50 4.8E-55 372.3 16.8 218 51-284 1-222 (245)
22 COG1118 CysA ABC-type sulfate/ 100.0 8.8E-50 1.9E-54 389.5 20.4 220 50-284 1-227 (345)
23 COG3638 ABC-type phosphate/pho 100.0 8.4E-50 1.8E-54 377.5 19.3 222 50-284 2-237 (258)
24 PRK13537 nodulation ABC transp 100.0 3E-48 6.5E-53 393.7 28.7 217 51-284 7-227 (306)
25 TIGR02314 ABC_MetN D-methionin 100.0 8.5E-48 1.8E-52 394.9 28.6 219 52-283 2-229 (343)
26 COG2884 FtsE Predicted ATPase 100.0 1.4E-48 3.1E-53 357.4 19.9 212 51-278 1-220 (223)
27 TIGR03265 PhnT2 putative 2-ami 100.0 1.2E-47 2.5E-52 396.0 28.8 217 51-284 4-224 (353)
28 PRK11650 ugpC glycerol-3-phosp 100.0 1.2E-47 2.6E-52 396.4 28.6 217 51-283 3-223 (356)
29 COG1117 PstB ABC-type phosphat 100.0 1.8E-48 4E-53 362.8 19.2 222 50-283 6-236 (253)
30 COG1124 DppF ABC-type dipeptid 100.0 5.3E-48 1.2E-52 367.6 22.6 220 50-284 2-231 (252)
31 PRK13536 nodulation factor exp 100.0 2.5E-47 5.5E-52 391.6 29.3 219 49-284 39-261 (340)
32 PRK11432 fbpC ferric transport 100.0 2.2E-47 4.7E-52 393.5 28.9 216 51-283 6-225 (351)
33 TIGR03258 PhnT 2-aminoethylpho 100.0 2.9E-47 6.3E-52 393.9 28.8 216 51-283 5-227 (362)
34 cd03261 ABC_Org_Solvent_Resist 100.0 3.8E-47 8.3E-52 371.4 27.3 215 52-282 1-224 (235)
35 PRK10851 sulfate/thiosulfate t 100.0 6.2E-47 1.3E-51 390.6 29.0 220 50-283 1-225 (353)
36 PRK09452 potA putrescine/sperm 100.0 7.3E-47 1.6E-51 392.4 29.1 217 50-283 13-233 (375)
37 TIGR01288 nodI ATP-binding ABC 100.0 1E-46 2.2E-51 382.3 28.8 218 50-284 3-224 (303)
38 COG1122 CbiO ABC-type cobalt t 100.0 2.7E-47 5.8E-52 370.6 23.2 218 51-284 3-228 (235)
39 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.9E-46 4E-51 363.0 27.4 216 52-280 1-219 (220)
40 cd03265 ABC_DrrA DrrA is the A 100.0 1.5E-46 3.2E-51 363.7 26.2 213 52-281 1-218 (220)
41 cd03259 ABC_Carb_Solutes_like 100.0 1.4E-46 3E-51 362.0 25.7 209 52-277 1-213 (213)
42 PRK11607 potG putrescine trans 100.0 3E-46 6.5E-51 388.3 29.5 217 50-283 18-238 (377)
43 cd03296 ABC_CysA_sulfate_impor 100.0 2.9E-46 6.3E-51 366.2 27.7 219 50-282 1-224 (239)
44 TIGR03522 GldA_ABC_ATP gliding 100.0 3.7E-46 7.9E-51 377.8 28.4 216 51-284 2-221 (301)
45 PRK11000 maltose/maltodextrin 100.0 3.5E-46 7.5E-51 387.6 28.8 216 51-283 3-222 (369)
46 KOG0058 Peptide exporter, ABC 100.0 2E-47 4.3E-52 408.6 19.8 250 1-284 432-691 (716)
47 cd03218 ABC_YhbG The ABC trans 100.0 3.3E-46 7.1E-51 363.8 26.6 214 52-282 1-220 (232)
48 PRK11153 metN DL-methionine tr 100.0 3.9E-46 8.4E-51 383.9 28.5 219 52-283 2-229 (343)
49 cd03219 ABC_Mj1267_LivG_branch 100.0 3.2E-46 7E-51 364.8 26.4 217 52-282 1-230 (236)
50 TIGR00960 3a0501s02 Type II (G 100.0 2.6E-46 5.5E-51 360.9 24.9 207 52-273 2-216 (216)
51 PRK13643 cbiO cobalt transport 100.0 6.6E-46 1.4E-50 373.7 27.9 231 52-295 2-247 (288)
52 PRK13637 cbiO cobalt transport 100.0 1E-45 2.2E-50 372.1 29.2 221 51-283 2-233 (287)
53 TIGR01188 drrA daunorubicin re 100.0 3.6E-46 7.9E-51 378.0 26.1 205 68-284 5-213 (302)
54 cd03258 ABC_MetN_methionine_tr 100.0 6.5E-46 1.4E-50 362.1 26.5 218 52-282 2-228 (233)
55 cd03301 ABC_MalK_N The N-termi 100.0 7.1E-46 1.5E-50 356.9 26.2 209 52-277 1-213 (213)
56 cd03263 ABC_subfamily_A The AB 100.0 7.7E-46 1.7E-50 358.4 25.7 215 52-282 1-219 (220)
57 PRK13651 cobalt transporter AT 100.0 1.3E-45 2.9E-50 374.0 28.2 221 51-283 2-253 (305)
58 COG1137 YhbG ABC-type (unclass 100.0 1.4E-47 3.1E-52 353.3 12.4 219 51-284 4-228 (243)
59 PRK13634 cbiO cobalt transport 100.0 1.8E-45 4E-50 370.8 28.7 220 51-283 2-234 (290)
60 cd03266 ABC_NatA_sodium_export 100.0 1.1E-45 2.5E-50 356.7 25.8 213 52-277 2-218 (218)
61 cd03269 ABC_putative_ATPase Th 100.0 1.2E-45 2.6E-50 354.7 25.2 209 52-277 1-210 (210)
62 COG4152 ABC-type uncharacteriz 100.0 1.5E-46 3.3E-51 355.9 18.5 219 51-286 2-221 (300)
63 cd03256 ABC_PhnC_transporter A 100.0 1.4E-45 3.1E-50 361.2 26.0 218 52-282 1-232 (241)
64 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.9E-46 1.9E-50 357.5 24.1 208 52-273 1-218 (218)
65 COG3840 ThiQ ABC-type thiamine 100.0 3.2E-46 6.9E-51 339.7 19.5 213 52-283 2-218 (231)
66 PRK15079 oligopeptide ABC tran 100.0 2.7E-45 5.9E-50 375.5 28.9 224 50-283 7-250 (331)
67 cd03224 ABC_TM1139_LivF_branch 100.0 1.5E-45 3.2E-50 356.8 25.0 212 52-282 1-219 (222)
68 cd03260 ABC_PstB_phosphate_tra 100.0 1.1E-45 2.5E-50 359.0 24.3 214 52-281 1-226 (227)
69 TIGR01186 proV glycine betaine 100.0 1.6E-45 3.4E-50 380.3 26.8 204 68-283 5-218 (363)
70 COG0411 LivG ABC-type branched 100.0 3.1E-46 6.8E-51 355.8 19.8 221 50-284 3-239 (250)
71 PRK09493 glnQ glutamine ABC tr 100.0 3.5E-45 7.7E-50 358.6 27.6 215 52-282 2-223 (240)
72 PRK11831 putative ABC transpor 100.0 3.5E-45 7.5E-50 365.0 27.9 217 50-282 6-231 (269)
73 PRK11264 putative amino-acid A 100.0 3.5E-45 7.5E-50 360.7 27.5 216 51-282 3-231 (250)
74 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3E-45 6.5E-50 359.7 26.8 214 52-282 1-223 (242)
75 PRK09536 btuD corrinoid ABC tr 100.0 2.9E-45 6.2E-50 382.8 28.2 219 51-283 3-227 (402)
76 PRK13646 cbiO cobalt transport 100.0 3.2E-45 6.9E-50 368.4 27.2 221 50-283 1-234 (286)
77 TIGR02315 ABC_phnC phosphonate 100.0 1.4E-45 3.1E-50 361.8 24.1 218 52-282 2-233 (243)
78 PRK13631 cbiO cobalt transport 100.0 7.8E-45 1.7E-49 370.6 30.3 232 50-294 20-278 (320)
79 PRK13647 cbiO cobalt transport 100.0 6.6E-45 1.4E-49 363.9 29.2 216 51-282 4-225 (274)
80 COG0444 DppD ABC-type dipeptid 100.0 2.6E-45 5.7E-50 363.2 25.3 226 52-283 2-242 (316)
81 TIGR02673 FtsE cell division A 100.0 3.4E-45 7.3E-50 352.4 25.1 205 52-272 2-214 (214)
82 cd03268 ABC_BcrA_bacitracin_re 100.0 2.6E-45 5.7E-50 351.8 23.9 205 52-277 1-208 (208)
83 PRK11248 tauB taurine transpor 100.0 8.2E-45 1.8E-49 359.6 28.1 212 52-280 2-216 (255)
84 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.1E-44 2.3E-49 354.5 28.4 214 52-283 2-220 (236)
85 COG4175 ProV ABC-type proline/ 100.0 8.7E-46 1.9E-50 362.0 20.3 222 51-284 4-254 (386)
86 cd03292 ABC_FtsE_transporter F 100.0 4.3E-45 9.2E-50 351.6 24.8 206 52-273 1-214 (214)
87 PRK10895 lipopolysaccharide AB 100.0 5.8E-45 1.3E-49 357.3 26.2 217 51-283 3-225 (241)
88 PRK11629 lolD lipoprotein tran 100.0 1.6E-44 3.6E-49 352.5 28.8 215 51-279 5-229 (233)
89 PRK11124 artP arginine transpo 100.0 8.4E-45 1.8E-49 356.4 26.7 215 50-281 1-227 (242)
90 cd03264 ABC_drug_resistance_li 100.0 5.3E-45 1.2E-49 350.5 24.6 207 52-277 1-211 (211)
91 PRK13641 cbiO cobalt transport 100.0 1.1E-44 2.3E-49 364.7 28.0 220 51-283 2-233 (287)
92 COG2274 SunT ABC-type bacterio 100.0 1E-45 2.2E-50 407.9 22.1 254 2-284 438-696 (709)
93 PRK13650 cbiO cobalt transport 100.0 1.2E-44 2.5E-49 363.0 27.8 218 51-283 4-228 (279)
94 PRK10070 glycine betaine trans 100.0 1.2E-44 2.6E-49 377.9 28.5 202 70-283 42-253 (400)
95 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.5E-45 1.2E-49 363.5 24.7 214 53-283 26-249 (269)
96 PRK10908 cell division protein 100.0 1.3E-44 2.8E-49 350.6 26.4 207 52-274 2-216 (222)
97 PRK10619 histidine/lysine/argi 100.0 1.8E-44 4E-49 357.3 27.8 216 51-282 5-239 (257)
98 PRK09473 oppD oligopeptide tra 100.0 2.7E-44 5.8E-49 368.2 29.9 228 50-283 11-250 (330)
99 TIGR00972 3a0107s01c2 phosphat 100.0 2.1E-44 4.5E-49 354.8 27.9 216 52-282 2-230 (247)
100 PRK11614 livF leucine/isoleuci 100.0 1.1E-44 2.4E-49 354.4 25.8 214 51-283 5-225 (237)
101 PRK11308 dppF dipeptide transp 100.0 2.4E-44 5.1E-49 368.1 29.1 222 51-283 5-243 (327)
102 PRK11247 ssuB aliphatic sulfon 100.0 1.2E-44 2.6E-49 358.7 26.0 207 51-280 12-219 (257)
103 TIGR03411 urea_trans_UrtD urea 100.0 1.9E-44 4E-49 353.8 27.0 217 51-282 2-229 (242)
104 TIGR03005 ectoine_ehuA ectoine 100.0 2E-44 4.3E-49 355.9 27.2 215 52-282 1-234 (252)
105 cd03226 ABC_cobalt_CbiO_domain 100.0 5.5E-45 1.2E-49 348.9 22.5 201 53-274 1-205 (205)
106 PRK11300 livG leucine/isoleuci 100.0 2E-44 4.4E-49 356.3 27.1 218 51-282 5-241 (255)
107 PRK13636 cbiO cobalt transport 100.0 2.8E-44 6E-49 361.1 28.5 218 51-284 5-231 (283)
108 COG0410 LivF ABC-type branched 100.0 7.3E-45 1.6E-49 343.9 22.7 216 51-284 3-226 (237)
109 COG4988 CydD ABC-type transpor 100.0 9.5E-45 2.1E-49 381.5 26.0 248 1-284 285-543 (559)
110 PRK13649 cbiO cobalt transport 100.0 3.8E-44 8.2E-49 359.4 29.0 221 50-283 1-233 (280)
111 PRK11174 cysteine/glutathione 100.0 6.4E-45 1.4E-49 400.4 25.6 245 2-284 316-572 (588)
112 cd03234 ABCG_White The White s 100.0 2.3E-44 5.1E-49 349.8 26.5 220 52-277 4-226 (226)
113 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-44 2.5E-49 348.3 23.9 206 52-273 1-213 (213)
114 TIGR01978 sufC FeS assembly AT 100.0 2.5E-44 5.5E-49 352.8 26.8 218 52-282 1-232 (243)
115 PRK10575 iron-hydroxamate tran 100.0 2.4E-44 5.3E-49 358.1 26.8 225 44-282 4-235 (265)
116 TIGR02211 LolD_lipo_ex lipopro 100.0 2.6E-44 5.5E-49 348.0 26.2 209 52-274 2-220 (221)
117 PRK11022 dppD dipeptide transp 100.0 3.6E-44 7.8E-49 366.8 28.6 227 51-283 3-242 (326)
118 PRK13548 hmuV hemin importer A 100.0 3.5E-44 7.6E-49 355.7 27.7 216 51-283 2-229 (258)
119 PRK11231 fecE iron-dicitrate t 100.0 2.1E-44 4.6E-49 356.5 26.0 218 51-282 2-225 (255)
120 cd03225 ABC_cobalt_CbiO_domain 100.0 1.4E-44 3E-49 347.5 23.9 204 54-272 2-211 (211)
121 PRK13638 cbiO cobalt transport 100.0 2E-44 4.2E-49 359.9 25.9 215 52-283 2-224 (271)
122 PRK14268 phosphate ABC transpo 100.0 3.8E-44 8.3E-49 355.3 27.6 217 50-282 11-240 (258)
123 cd03235 ABC_Metallic_Cations A 100.0 8.1E-45 1.8E-49 349.7 21.9 209 54-277 2-213 (213)
124 PRK09984 phosphonate/organopho 100.0 3.3E-44 7.1E-49 356.4 26.8 221 51-282 4-240 (262)
125 PRK13644 cbiO cobalt transport 100.0 2.4E-44 5.3E-49 359.8 25.5 215 52-283 2-223 (274)
126 PRK14267 phosphate ABC transpo 100.0 5.7E-44 1.2E-48 352.8 27.5 224 51-283 4-236 (253)
127 PRK14247 phosphate ABC transpo 100.0 7.5E-44 1.6E-48 351.3 28.3 224 51-283 3-233 (250)
128 cd03257 ABC_NikE_OppD_transpor 100.0 4.4E-44 9.6E-49 347.6 26.2 214 52-277 2-228 (228)
129 TIGR03410 urea_trans_UrtE urea 100.0 2.6E-44 5.6E-49 350.2 24.3 211 52-282 1-219 (230)
130 PRK14242 phosphate transporter 100.0 7.9E-44 1.7E-48 351.8 27.8 221 51-282 6-235 (253)
131 PRK13635 cbiO cobalt transport 100.0 1E-43 2.2E-48 356.3 28.6 217 51-283 5-228 (279)
132 PRK13652 cbiO cobalt transport 100.0 6.3E-44 1.4E-48 357.4 27.1 217 51-283 3-226 (277)
133 PRK13639 cbiO cobalt transport 100.0 1.2E-43 2.7E-48 354.9 29.1 216 52-283 2-225 (275)
134 PRK14273 phosphate ABC transpo 100.0 7.8E-44 1.7E-48 352.1 27.3 218 51-283 7-237 (254)
135 TIGR03740 galliderm_ABC gallid 100.0 7.3E-44 1.6E-48 345.6 26.4 208 52-280 1-209 (223)
136 TIGR02769 nickel_nikE nickel i 100.0 7.4E-44 1.6E-48 354.6 27.1 222 51-283 2-239 (265)
137 TIGR03415 ABC_choXWV_ATP choli 100.0 6.5E-44 1.4E-48 370.1 27.6 205 67-283 35-253 (382)
138 PRK10584 putative ABC transpor 100.0 1.1E-43 2.4E-48 345.2 27.2 211 51-275 6-226 (228)
139 TIGR03873 F420-0_ABC_ATP propo 100.0 7.3E-44 1.6E-48 352.8 26.2 217 52-282 2-224 (256)
140 COG1132 MdlB ABC-type multidru 100.0 2.2E-44 4.7E-49 394.6 24.4 246 2-284 297-552 (567)
141 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.6E-44 1.4E-48 342.9 24.7 207 52-277 1-211 (211)
142 PRK15093 antimicrobial peptide 100.0 1.5E-43 3.3E-48 362.9 28.9 229 51-283 3-247 (330)
143 PRK14269 phosphate ABC transpo 100.0 1.3E-43 2.9E-48 348.9 27.4 223 51-283 2-229 (246)
144 PRK13632 cbiO cobalt transport 100.0 9.4E-44 2E-48 355.0 26.7 219 49-283 5-230 (271)
145 PRK14256 phosphate ABC transpo 100.0 2E-43 4.3E-48 348.8 28.4 222 51-282 4-234 (252)
146 PRK10253 iron-enterobactin tra 100.0 1E-43 2.2E-48 353.6 26.6 220 50-283 6-232 (265)
147 PRK10744 pstB phosphate transp 100.0 1.7E-43 3.7E-48 351.0 28.0 224 49-283 11-243 (260)
148 PRK14235 phosphate transporter 100.0 1.6E-43 3.4E-48 352.7 27.5 223 50-282 18-249 (267)
149 cd03300 ABC_PotA_N PotA is an 100.0 1.7E-43 3.6E-48 345.2 27.0 214 52-282 1-218 (232)
150 TIGR00968 3a0106s01 sulfate AB 100.0 1.5E-43 3.3E-48 346.7 26.7 215 52-283 1-219 (237)
151 PRK13648 cbiO cobalt transport 100.0 2.5E-43 5.3E-48 351.6 28.4 217 51-283 7-230 (269)
152 PRK14245 phosphate ABC transpo 100.0 2.5E-43 5.5E-48 347.7 28.0 222 50-283 2-233 (250)
153 PRK14250 phosphate ABC transpo 100.0 1.2E-43 2.6E-48 348.3 25.4 210 51-282 3-219 (241)
154 PRK14274 phosphate ABC transpo 100.0 2.4E-43 5.1E-48 349.7 27.6 222 51-283 12-242 (259)
155 COG1123 ATPase components of v 100.0 9.9E-44 2.1E-48 375.1 26.3 227 51-284 5-244 (539)
156 PRK13640 cbiO cobalt transport 100.0 1.5E-43 3.2E-48 355.6 26.4 220 51-283 5-231 (282)
157 TIGR01277 thiQ thiamine ABC tr 100.0 1.9E-43 4.2E-48 340.4 26.0 208 52-278 1-212 (213)
158 PRK10771 thiQ thiamine transpo 100.0 2.1E-43 4.5E-48 344.5 26.1 213 52-283 2-218 (232)
159 PRK11144 modC molybdate transp 100.0 1.5E-43 3.3E-48 365.9 26.4 206 52-283 2-217 (352)
160 PRK14239 phosphate transporter 100.0 3.3E-43 7.2E-48 347.0 27.6 222 51-283 5-235 (252)
161 PRK13645 cbiO cobalt transport 100.0 2.3E-43 4.9E-48 355.4 26.7 220 51-283 6-239 (289)
162 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.8E-44 1.5E-48 398.8 25.3 242 2-284 420-673 (686)
163 cd03299 ABC_ModC_like Archeal 100.0 3.7E-43 7.9E-48 343.6 27.1 214 52-283 1-218 (235)
164 PRK14241 phosphate transporter 100.0 3.6E-43 7.9E-48 348.2 27.5 219 51-283 4-241 (258)
165 PRK13549 xylose transporter AT 100.0 1.9E-43 4.1E-48 382.1 27.6 220 51-282 5-230 (506)
166 PRK14270 phosphate ABC transpo 100.0 3.6E-43 7.9E-48 346.7 27.2 223 50-283 3-234 (251)
167 PRK15112 antimicrobial peptide 100.0 2.7E-43 5.8E-48 351.0 26.3 222 51-283 4-238 (267)
168 PRK14240 phosphate transporter 100.0 5.5E-43 1.2E-47 345.2 28.0 221 51-282 3-232 (250)
169 PRK10762 D-ribose transporter 100.0 2.5E-43 5.4E-48 380.8 27.4 218 51-282 4-228 (501)
170 TIGR02142 modC_ABC molybdenum 100.0 2.8E-43 6.2E-48 364.2 26.7 207 56-283 4-220 (354)
171 PRK14262 phosphate ABC transpo 100.0 5.3E-43 1.1E-47 345.3 27.3 222 51-283 3-233 (250)
172 PRK14237 phosphate transporter 100.0 6.9E-43 1.5E-47 348.1 28.4 223 49-282 18-249 (267)
173 TIGR01184 ntrCD nitrate transp 100.0 1.8E-43 3.9E-48 344.7 23.7 200 72-281 1-201 (230)
174 PRK13633 cobalt transporter AT 100.0 4.2E-43 9.1E-48 352.0 26.8 220 51-283 4-232 (280)
175 KOG0055 Multidrug/pheromone ex 100.0 2.6E-44 5.7E-49 403.7 20.1 252 1-284 315-576 (1228)
176 PRK11176 lipid transporter ATP 100.0 1.5E-43 3.2E-48 389.1 25.7 246 2-284 310-567 (582)
177 PRK11701 phnK phosphonate C-P 100.0 6.3E-43 1.4E-47 346.5 27.1 216 51-282 6-239 (258)
178 PRK14272 phosphate ABC transpo 100.0 1E-42 2.2E-47 343.6 28.2 220 50-283 3-235 (252)
179 cd03267 ABC_NatA_like Similar 100.0 3.5E-43 7.5E-48 344.0 24.6 198 68-277 33-236 (236)
180 PRK14259 phosphate ABC transpo 100.0 5.3E-43 1.1E-47 349.3 26.3 221 50-283 12-252 (269)
181 PRK10790 putative multidrug tr 100.0 5.6E-43 1.2E-47 385.3 28.9 241 2-283 310-562 (592)
182 PRK14248 phosphate ABC transpo 100.0 1.1E-42 2.4E-47 346.6 27.9 223 50-283 20-251 (268)
183 PRK14244 phosphate ABC transpo 100.0 7.6E-43 1.7E-47 344.4 26.5 222 51-282 5-235 (251)
184 PRK09700 D-allose transporter 100.0 3.9E-43 8.5E-48 380.0 26.5 218 51-282 5-232 (510)
185 PRK11160 cysteine/glutathione 100.0 4.2E-43 9.1E-48 384.8 27.0 246 2-284 306-562 (574)
186 cd03297 ABC_ModC_molybdenum_tr 100.0 5.8E-43 1.3E-47 337.2 24.6 200 56-277 5-214 (214)
187 cd03233 ABC_PDR_domain1 The pl 100.0 6.2E-43 1.4E-47 334.4 24.5 195 51-277 3-202 (202)
188 COG4525 TauB ABC-type taurine 100.0 4.3E-43 9.3E-48 322.3 22.3 214 52-280 4-220 (259)
189 PRK13547 hmuV hemin importer A 100.0 7.3E-43 1.6E-47 348.7 26.0 220 52-282 2-242 (272)
190 COG4559 ABC-type hemin transpo 100.0 2.5E-43 5.4E-48 327.9 21.0 218 51-283 1-229 (259)
191 PRK14260 phosphate ABC transpo 100.0 1.1E-42 2.5E-47 344.9 27.0 222 51-283 7-242 (259)
192 PRK14253 phosphate ABC transpo 100.0 1.1E-42 2.5E-47 342.7 26.5 221 51-282 3-231 (249)
193 PRK14261 phosphate ABC transpo 100.0 1.6E-42 3.6E-47 342.5 27.6 221 51-282 6-235 (253)
194 PRK14249 phosphate ABC transpo 100.0 1.6E-42 3.6E-47 342.1 27.5 222 51-283 4-234 (251)
195 PRK14271 phosphate ABC transpo 100.0 2.1E-42 4.6E-47 346.2 28.7 223 50-283 20-250 (276)
196 COG1123 ATPase components of v 100.0 4.7E-43 1E-47 369.9 25.1 225 49-283 278-518 (539)
197 PRK13642 cbiO cobalt transport 100.0 1.3E-42 2.9E-47 347.8 26.9 218 51-283 4-228 (277)
198 PRK15439 autoinducer 2 ABC tra 100.0 9.3E-43 2E-47 377.0 27.5 212 51-283 11-228 (510)
199 PRK14255 phosphate ABC transpo 100.0 2.6E-42 5.6E-47 340.8 28.2 221 51-282 5-234 (252)
200 PRK14258 phosphate ABC transpo 100.0 2.3E-42 4.9E-47 343.2 28.0 223 51-283 7-244 (261)
201 COG4181 Predicted ABC-type tra 100.0 1.3E-43 2.8E-48 319.6 17.1 211 51-275 6-226 (228)
202 TIGR03608 L_ocin_972_ABC putat 100.0 7.1E-43 1.5E-47 334.2 23.4 197 54-268 1-206 (206)
203 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.8E-43 6E-48 395.4 23.7 251 2-284 438-700 (710)
204 TIGR00958 3a01208 Conjugate Tr 100.0 2.6E-43 5.6E-48 395.1 23.3 245 2-284 446-702 (711)
205 TIGR03375 type_I_sec_LssB type 100.0 4E-43 8.6E-48 393.1 24.8 247 2-284 430-688 (694)
206 TIGR02982 heterocyst_DevA ABC 100.0 1.3E-42 2.9E-47 336.2 24.8 209 52-273 2-219 (220)
207 PRK14236 phosphate transporter 100.0 2.5E-42 5.3E-47 345.0 27.5 221 51-282 25-254 (272)
208 PRK14238 phosphate transporter 100.0 2.7E-42 5.8E-47 344.6 27.5 223 49-282 22-253 (271)
209 TIGR01193 bacteriocin_ABC ABC- 100.0 3.4E-43 7.4E-48 394.4 23.4 246 2-284 440-697 (708)
210 PRK14257 phosphate ABC transpo 100.0 3.1E-42 6.7E-47 352.7 28.2 224 50-283 79-312 (329)
211 PRK10418 nikD nickel transport 100.0 3.3E-42 7.3E-47 340.6 27.4 216 51-283 4-229 (254)
212 PRK14251 phosphate ABC transpo 100.0 3.5E-42 7.6E-47 339.6 27.4 217 51-282 4-233 (251)
213 cd03252 ABCC_Hemolysin The ABC 100.0 4.8E-43 1E-47 342.8 21.0 212 52-283 1-224 (237)
214 PRK14275 phosphate ABC transpo 100.0 4E-42 8.6E-47 345.9 28.1 221 48-283 36-269 (286)
215 COG4987 CydC ABC-type transpor 100.0 1.3E-43 2.8E-48 367.8 17.6 245 2-284 305-561 (573)
216 CHL00131 ycf16 sulfate ABC tra 100.0 5.7E-42 1.2E-46 338.2 28.5 218 51-281 7-238 (252)
217 PRK14263 phosphate ABC transpo 100.0 3.9E-42 8.5E-47 341.6 27.3 222 49-283 6-244 (261)
218 TIGR02323 CP_lyasePhnK phospho 100.0 4.1E-42 9E-47 339.5 26.8 217 51-283 3-237 (253)
219 TIGR02633 xylG D-xylose ABC tr 100.0 2.4E-42 5.3E-47 373.0 27.4 219 52-282 2-228 (500)
220 TIGR02770 nickel_nikD nickel i 100.0 2.1E-42 4.7E-47 337.0 24.2 204 71-283 1-214 (230)
221 TIGR01842 type_I_sec_PrtD type 100.0 1.4E-42 3E-47 378.6 25.4 246 2-283 286-541 (544)
222 PRK14265 phosphate ABC transpo 100.0 4.2E-42 9.2E-47 343.7 26.7 223 48-283 17-257 (274)
223 PRK10419 nikE nickel transport 100.0 6.1E-42 1.3E-46 341.5 27.2 222 51-283 3-240 (268)
224 PRK10982 galactose/methyl gala 100.0 2.3E-42 5E-47 372.4 25.9 214 55-282 2-221 (491)
225 PRK10261 glutathione transport 100.0 4.6E-42 1E-46 379.4 28.7 223 50-283 312-552 (623)
226 PRK14254 phosphate ABC transpo 100.0 8.2E-42 1.8E-46 343.4 27.9 216 50-282 38-267 (285)
227 cd03213 ABCG_EPDR ABCG transpo 100.0 4.9E-42 1.1E-46 326.2 24.7 187 51-277 3-194 (194)
228 cd03251 ABCC_MsbA MsbA is an e 100.0 1.6E-42 3.5E-47 338.3 21.5 213 52-284 1-225 (234)
229 PRK14266 phosphate ABC transpo 100.0 8.7E-42 1.9E-46 336.6 26.9 222 50-282 2-232 (250)
230 KOG0055 Multidrug/pheromone ex 100.0 7.6E-43 1.7E-47 391.9 21.6 251 2-284 953-1213(1228)
231 PRK11288 araG L-arabinose tran 100.0 6.4E-42 1.4E-46 369.8 28.1 215 51-279 4-224 (501)
232 PRK13657 cyclic beta-1,2-gluca 100.0 3.3E-42 7.1E-47 378.9 26.0 245 2-283 301-557 (588)
233 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.6E-42 3.6E-47 339.2 20.8 214 52-284 1-226 (238)
234 TIGR02203 MsbA_lipidA lipid A 100.0 4.3E-42 9.2E-47 376.6 26.1 245 2-283 299-555 (571)
235 cd03232 ABC_PDR_domain2 The pl 100.0 6.8E-42 1.5E-46 324.7 23.9 186 51-277 3-192 (192)
236 PRK15056 manganese/iron transp 100.0 7.9E-42 1.7E-46 341.3 25.6 218 51-282 6-228 (272)
237 PRK14243 phosphate transporter 100.0 8.5E-42 1.8E-46 339.7 25.5 220 51-283 10-247 (264)
238 COG4598 HisP ABC-type histidin 100.0 3.4E-43 7.4E-48 319.1 13.9 217 51-283 6-240 (256)
239 PRK13543 cytochrome c biogenes 100.0 9.4E-42 2E-46 329.0 24.8 201 50-270 10-212 (214)
240 cd03245 ABCC_bacteriocin_expor 100.0 3.8E-42 8.2E-47 332.6 21.8 207 52-277 3-220 (220)
241 PRK14246 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 337.3 25.7 216 51-283 10-240 (257)
242 PRK10261 glutathione transport 100.0 6.5E-42 1.4E-46 378.2 26.4 221 51-283 12-257 (623)
243 PRK03695 vitamin B12-transport 100.0 7.4E-42 1.6E-46 337.1 23.8 198 71-282 11-220 (248)
244 COG1129 MglA ABC-type sugar tr 100.0 8.5E-42 1.8E-46 358.2 25.5 216 50-279 7-229 (500)
245 PRK13546 teichoic acids export 100.0 4E-41 8.6E-46 334.7 28.9 215 50-284 3-232 (264)
246 TIGR03269 met_CoM_red_A2 methy 100.0 8.9E-42 1.9E-46 370.3 26.2 217 52-285 1-259 (520)
247 KOG0057 Mitochondrial Fe/S clu 100.0 1.5E-42 3.2E-47 360.2 19.0 212 51-284 351-574 (591)
248 cd03254 ABCC_Glucan_exporter_l 100.0 3.7E-42 7.9E-47 334.7 20.7 212 51-283 2-225 (229)
249 COG4618 ArpD ABC-type protease 100.0 2.4E-42 5.2E-47 355.5 20.3 254 2-286 304-562 (580)
250 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.5E-42 1.6E-46 332.1 22.7 202 52-277 23-224 (224)
251 PRK13538 cytochrome c biogenes 100.0 1.2E-41 2.6E-46 325.8 23.7 197 52-268 2-202 (204)
252 PRK09580 sufC cysteine desulfu 100.0 3.1E-41 6.7E-46 332.0 27.1 218 52-282 2-233 (248)
253 PTZ00265 multidrug resistance 100.0 2.5E-42 5.4E-47 409.1 23.0 255 2-283 1128-1451(1466)
254 PRK10247 putative ABC transpor 100.0 9E-42 1.9E-46 331.6 22.8 207 51-278 7-221 (225)
255 cd03231 ABC_CcmA_heme_exporter 100.0 1.2E-41 2.7E-46 325.1 23.0 194 52-268 1-198 (201)
256 TIGR01846 type_I_sec_HlyB type 100.0 6.4E-42 1.4E-46 383.3 24.6 246 2-284 423-680 (694)
257 TIGR01257 rim_protein retinal- 100.0 1.2E-41 2.6E-46 404.9 28.0 223 50-287 1936-2162(2272)
258 PRK10789 putative multidrug tr 100.0 5.8E-42 1.3E-46 375.5 23.5 244 2-283 282-537 (569)
259 PRK14252 phosphate ABC transpo 100.0 3.5E-41 7.7E-46 335.3 26.8 221 50-282 15-247 (265)
260 TIGR03269 met_CoM_red_A2 methy 100.0 1.7E-41 3.6E-46 368.1 26.6 222 50-284 278-517 (520)
261 PRK14264 phosphate ABC transpo 100.0 6E-41 1.3E-45 340.3 28.6 225 50-283 44-288 (305)
262 cd03230 ABC_DR_subfamily_A Thi 100.0 1.6E-41 3.4E-46 316.9 22.1 169 52-273 1-173 (173)
263 PRK15134 microcin C ABC transp 100.0 2.8E-41 6.1E-46 367.1 27.7 224 51-283 5-245 (529)
264 PRK15134 microcin C ABC transp 100.0 1.6E-41 3.4E-46 369.0 25.4 222 51-283 275-514 (529)
265 PRK09544 znuC high-affinity zi 100.0 3.5E-41 7.5E-46 332.9 24.9 202 51-283 4-208 (251)
266 TIGR01192 chvA glucan exporter 100.0 1.7E-41 3.7E-46 372.7 25.2 246 2-284 301-558 (585)
267 cd03253 ABCC_ATM1_transporter 100.0 1E-41 2.2E-46 333.1 20.7 211 52-283 1-223 (236)
268 TIGR02204 MsbA_rel ABC transpo 100.0 1.6E-41 3.4E-46 372.6 24.5 248 2-283 303-562 (576)
269 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.9E-41 8.5E-46 321.4 23.6 186 52-286 1-195 (200)
270 PRK13549 xylose transporter AT 100.0 2.6E-41 5.6E-46 365.5 25.1 221 51-282 259-492 (506)
271 TIGR02324 CP_lyasePhnL phospho 100.0 6.8E-41 1.5E-45 324.8 24.9 206 52-269 2-223 (224)
272 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.2E-41 6.9E-46 337.0 23.1 212 51-284 2-225 (275)
273 TIGR01189 ccmA heme ABC export 100.0 4.7E-41 1E-45 320.2 22.9 193 52-267 1-197 (198)
274 PRK13539 cytochrome c biogenes 100.0 4.7E-41 1E-45 322.5 23.1 197 51-270 2-200 (207)
275 cd03229 ABC_Class3 This class 100.0 3.6E-41 7.8E-46 315.9 21.7 170 52-272 1-178 (178)
276 COG4604 CeuD ABC-type enteroch 100.0 1.5E-42 3.3E-47 319.2 11.9 218 52-284 2-225 (252)
277 PRK09700 D-allose transporter 100.0 5E-41 1.1E-45 363.6 24.9 213 51-279 265-493 (510)
278 cd03244 ABCC_MRP_domain2 Domai 100.0 4.7E-41 1E-45 325.2 21.7 207 51-278 2-220 (221)
279 TIGR01257 rim_protein retinal- 100.0 1.2E-40 2.5E-45 396.5 29.2 221 50-286 927-1151(2272)
280 COG4161 ArtP ABC-type arginine 100.0 2.4E-41 5.2E-46 302.2 17.6 215 50-280 1-226 (242)
281 cd03215 ABC_Carb_Monos_II This 100.0 1E-40 2.3E-45 313.8 22.3 170 51-273 4-182 (182)
282 PRK10938 putative molybdenum t 100.0 6.8E-41 1.5E-45 360.9 23.6 208 51-283 3-223 (490)
283 TIGR02868 CydC thiol reductant 100.0 2.2E-41 4.7E-46 368.0 19.8 220 2-254 299-529 (529)
284 cd03248 ABCC_TAP TAP, the Tran 100.0 3.3E-41 7.1E-46 327.5 18.9 211 49-273 9-226 (226)
285 PRK13540 cytochrome c biogenes 100.0 1.4E-40 3.1E-45 317.4 22.6 192 52-266 2-197 (200)
286 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-40 2.9E-45 359.5 24.7 221 50-280 256-488 (500)
287 PRK13545 tagH teichoic acids e 100.0 5.5E-40 1.2E-44 347.9 28.2 212 51-284 21-232 (549)
288 COG4148 ModC ABC-type molybdat 100.0 1.3E-41 2.9E-46 327.6 14.4 193 74-284 16-218 (352)
289 COG4172 ABC-type uncharacteriz 100.0 4.7E-40 1E-44 330.1 26.1 227 48-284 273-516 (534)
290 cd03246 ABCC_Protease_Secretio 100.0 1.7E-40 3.7E-45 309.9 21.0 168 52-273 1-173 (173)
291 cd03288 ABCC_SUR2 The SUR doma 100.0 3E-40 6.6E-45 327.2 23.9 212 51-283 19-242 (257)
292 TIGR01166 cbiO cobalt transpor 100.0 1.8E-40 3.8E-45 314.1 21.2 175 68-254 4-187 (190)
293 TIGR03771 anch_rpt_ABC anchore 100.0 2.3E-40 5E-45 321.4 22.3 197 77-283 1-200 (223)
294 cd03247 ABCC_cytochrome_bd The 100.0 2E-40 4.3E-45 310.8 20.8 174 52-277 1-178 (178)
295 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.7E-40 1E-44 315.3 23.6 197 51-279 6-207 (207)
296 PLN03232 ABC transporter C fam 100.0 3.2E-40 7E-45 393.8 27.4 249 2-284 1198-1458(1495)
297 PRK10762 D-ribose transporter 100.0 3.5E-40 7.6E-45 356.3 24.9 213 51-282 257-482 (501)
298 TIGR02857 CydD thiol reductant 100.0 1.4E-40 3E-45 361.7 21.7 229 2-268 289-529 (529)
299 PRK11288 araG L-arabinose tran 100.0 2.6E-40 5.7E-45 357.3 23.7 214 51-282 257-483 (501)
300 PLN03130 ABC transporter C fam 100.0 4.4E-40 9.5E-45 393.3 28.0 249 2-284 1201-1461(1622)
301 COG3845 ABC-type uncharacteriz 100.0 4.8E-40 1E-44 338.9 23.6 214 51-278 4-223 (501)
302 cd03250 ABCC_MRP_domain1 Domai 100.0 3.7E-40 8E-45 315.3 20.9 196 52-272 1-204 (204)
303 KOG0056 Heavy metal exporter H 100.0 2.9E-41 6.3E-46 344.2 14.0 249 6-284 508-761 (790)
304 PRK15439 autoinducer 2 ABC tra 100.0 8.6E-40 1.9E-44 353.9 24.2 213 51-282 268-490 (510)
305 TIGR01187 potA spermidine/putr 100.0 1.2E-39 2.5E-44 333.6 23.3 185 87-283 1-189 (325)
306 cd03214 ABC_Iron-Siderophores_ 100.0 4.6E-40 1E-44 308.9 18.7 174 53-277 1-180 (180)
307 COG0396 sufC Cysteine desulfur 100.0 3.2E-39 7E-44 304.5 24.1 231 50-293 2-242 (251)
308 TIGR00957 MRP_assoc_pro multi 100.0 1.5E-39 3.3E-44 388.5 27.6 249 2-284 1248-1508(1522)
309 PTZ00265 multidrug resistance 100.0 1.6E-39 3.4E-44 385.4 26.4 244 2-271 350-655 (1466)
310 PRK10522 multidrug transporter 100.0 3.3E-39 7.1E-44 352.2 26.3 232 2-276 291-530 (547)
311 cd03216 ABC_Carb_Monos_I This 100.0 4.9E-39 1.1E-43 297.4 22.1 156 52-275 1-162 (163)
312 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.4E-38 3.1E-43 319.0 27.0 202 49-283 37-246 (282)
313 cd03290 ABCC_SUR1_N The SUR do 100.0 4E-39 8.7E-44 311.3 22.3 199 53-272 2-218 (218)
314 cd03228 ABCC_MRP_Like The MRP 100.0 3E-39 6.6E-44 300.9 20.4 166 52-272 1-171 (171)
315 PTZ00243 ABC transporter; Prov 100.0 6.6E-39 1.4E-43 382.6 28.3 214 50-284 1307-1533(1560)
316 PRK15064 ABC transporter ATP-b 100.0 7.2E-39 1.6E-43 348.3 25.7 209 52-283 2-241 (530)
317 cd03223 ABCD_peroxisomal_ALDP 100.0 5.5E-39 1.2E-43 297.9 21.1 163 52-271 1-163 (166)
318 PRK11819 putative ABC transpor 100.0 1E-38 2.2E-43 348.9 25.5 210 50-282 5-248 (556)
319 PRK10535 macrolide transporter 100.0 2.6E-38 5.7E-43 350.9 28.6 219 51-283 4-231 (648)
320 PRK13541 cytochrome c biogenes 100.0 1.1E-38 2.3E-43 303.4 21.9 190 52-265 2-192 (195)
321 PRK15177 Vi polysaccharide exp 100.0 8E-39 1.7E-43 308.6 20.8 195 70-288 1-196 (213)
322 PRK10982 galactose/methyl gala 100.0 1E-38 2.2E-43 344.1 23.8 215 50-280 249-476 (491)
323 TIGR01271 CFTR_protein cystic 100.0 1.6E-38 3.6E-43 378.7 27.9 212 50-283 1216-1439(1490)
324 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.9E-38 4.2E-43 346.7 26.1 209 50-276 336-551 (555)
325 COG4608 AppF ABC-type oligopep 100.0 1.4E-38 3.1E-43 309.2 21.6 191 50-284 3-199 (268)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.8E-38 6.2E-43 345.1 25.8 211 50-283 3-247 (552)
327 PRK15064 ABC transporter ATP-b 100.0 2E-38 4.4E-43 344.8 24.4 203 50-283 318-524 (530)
328 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.7E-38 5.8E-43 311.4 22.3 189 71-282 9-205 (246)
329 COG4172 ABC-type uncharacteriz 100.0 3.5E-38 7.5E-43 316.7 22.9 227 51-283 6-246 (534)
330 PRK10938 putative molybdenum t 100.0 1.9E-38 4.1E-43 341.9 22.5 214 50-277 259-485 (490)
331 COG4619 ABC-type uncharacteriz 100.0 9.8E-40 2.1E-44 293.6 9.5 192 67-273 14-212 (223)
332 COG4586 ABC-type uncharacteriz 100.0 7.2E-39 1.6E-43 308.1 15.6 206 69-286 37-248 (325)
333 PRK11819 putative ABC transpor 100.0 2.5E-37 5.4E-42 337.9 25.6 204 50-281 323-530 (556)
334 COG1119 ModF ABC-type molybden 100.0 4.4E-38 9.6E-43 300.0 16.0 217 48-278 28-256 (257)
335 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.1E-37 6.8E-42 336.9 24.9 203 50-280 321-527 (552)
336 PLN03232 ABC transporter C fam 100.0 2.7E-37 5.7E-42 368.8 26.4 237 2-283 583-827 (1495)
337 PRK13409 putative ATPase RIL; 100.0 3E-37 6.5E-42 337.8 24.0 199 50-280 339-538 (590)
338 COG4674 Uncharacterized ABC-ty 100.0 7.7E-38 1.7E-42 287.7 15.8 219 50-283 4-234 (249)
339 PLN03130 ABC transporter C fam 100.0 5.2E-37 1.1E-41 367.0 26.7 236 2-283 583-827 (1622)
340 TIGR00954 3a01203 Peroxysomal 100.0 3.3E-37 7.1E-42 342.5 22.0 198 51-269 451-652 (659)
341 PRK10636 putative ABC transpor 100.0 9.2E-37 2E-41 337.8 24.1 202 50-283 311-516 (638)
342 cd03236 ABC_RNaseL_inhibitor_d 100.0 5.5E-37 1.2E-41 303.5 19.3 198 56-277 5-220 (255)
343 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2E-36 4.3E-41 274.4 19.8 144 52-272 1-144 (144)
344 PRK11147 ABC transporter ATPas 100.0 2.7E-36 5.8E-41 334.4 23.9 204 50-281 318-525 (635)
345 KOG0059 Lipid exporter ABCA1 a 100.0 7.6E-37 1.6E-41 348.5 19.5 222 50-287 563-790 (885)
346 COG1134 TagH ABC-type polysacc 100.0 8.9E-36 1.9E-40 284.6 23.6 218 51-288 3-240 (249)
347 PRK10636 putative ABC transpor 100.0 3.4E-36 7.3E-41 333.3 23.7 207 52-282 2-234 (638)
348 TIGR00957 MRP_assoc_pro multi 100.0 5.4E-36 1.2E-40 358.1 26.5 243 2-283 602-849 (1522)
349 cd03222 ABC_RNaseL_inhibitor T 100.0 4.9E-36 1.1E-40 280.5 20.5 154 55-281 4-160 (177)
350 COG1101 PhnK ABC-type uncharac 100.0 1.6E-36 3.4E-41 283.1 17.0 216 52-276 2-230 (263)
351 COG4136 ABC-type uncharacteriz 100.0 2E-36 4.4E-41 267.7 15.2 202 51-268 2-207 (213)
352 COG5265 ATM1 ABC-type transpor 100.0 1.1E-36 2.3E-41 307.8 14.6 215 51-284 262-486 (497)
353 PLN03073 ABC transporter F fam 100.0 1.9E-35 4.1E-40 329.4 25.8 205 50-283 507-713 (718)
354 cd03238 ABC_UvrA The excision 100.0 1.5E-35 3.2E-40 277.1 20.0 157 68-273 7-166 (176)
355 PRK11147 ABC transporter ATPas 100.0 2.3E-35 5E-40 326.9 24.6 207 51-282 3-241 (635)
356 COG4167 SapF ABC-type antimicr 100.0 9E-36 2E-40 271.4 17.1 222 51-283 4-238 (267)
357 TIGR01271 CFTR_protein cystic 100.0 4.3E-35 9.3E-40 349.5 26.0 194 69-283 439-635 (1490)
358 COG4107 PhnK ABC-type phosphon 100.0 2E-35 4.4E-40 267.2 14.3 214 51-283 6-240 (258)
359 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.8E-34 4E-39 264.7 20.5 151 54-272 2-157 (157)
360 PRK13409 putative ATPase RIL; 100.0 1.2E-34 2.5E-39 317.5 18.7 188 57-271 79-287 (590)
361 COG0488 Uup ATPase components 100.0 3.5E-34 7.6E-39 307.3 19.6 207 51-281 3-237 (530)
362 COG4133 CcmA ABC-type transpor 100.0 4.5E-34 9.9E-39 262.0 15.3 187 51-256 2-192 (209)
363 KOG0054 Multidrug resistance-a 100.0 3.6E-33 7.9E-38 320.5 20.9 247 4-284 1104-1362(1381)
364 PTZ00243 ABC transporter; Prov 100.0 5.6E-33 1.2E-37 331.9 22.7 198 68-283 672-869 (1560)
365 KOG0054 Multidrug resistance-a 100.0 1.5E-32 3.1E-37 315.6 24.8 240 2-284 485-731 (1381)
366 PLN03073 ABC transporter F fam 100.0 5.4E-33 1.2E-37 309.7 18.7 215 48-281 174-428 (718)
367 cd03270 ABC_UvrA_I The excisio 100.0 6.1E-32 1.3E-36 263.0 20.8 189 68-277 7-226 (226)
368 COG4778 PhnL ABC-type phosphon 100.0 9.5E-33 2.1E-37 249.0 12.5 209 51-270 4-227 (235)
369 PF00005 ABC_tran: ABC transpo 100.0 8.6E-32 1.9E-36 240.6 12.7 132 72-223 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 2.2E-30 4.7E-35 256.2 20.2 195 69-279 8-261 (261)
371 COG1129 MglA ABC-type sugar tr 100.0 2E-29 4.3E-34 265.0 22.3 214 49-280 261-486 (500)
372 COG0488 Uup ATPase components 100.0 1.3E-29 2.8E-34 272.2 21.1 203 48-282 318-523 (530)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 7.7E-30 1.7E-34 243.1 14.1 165 73-270 14-190 (197)
374 COG4138 BtuD ABC-type cobalami 100.0 7.1E-31 1.5E-35 237.9 6.1 206 51-283 3-220 (248)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 3.6E-28 7.9E-33 238.4 13.1 183 68-269 14-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 100.0 2.6E-29 5.6E-34 242.2 3.7 187 52-270 6-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 5E-28 1.1E-32 239.0 10.7 182 82-269 25-242 (251)
378 COG4615 PvdE ABC-type sideroph 99.9 1.2E-27 2.6E-32 240.1 11.1 234 2-277 291-530 (546)
379 cd03279 ABC_sbcCD SbcCD and ot 99.9 1E-26 2.2E-31 224.3 15.8 190 51-272 5-210 (213)
380 COG4178 ABC-type uncharacteriz 99.9 9.4E-27 2E-31 249.3 17.1 197 49-269 390-587 (604)
381 COG3845 ABC-type uncharacteriz 99.9 4.6E-26 9.9E-31 235.6 21.3 221 48-281 254-489 (501)
382 PRK00635 excinuclease ABC subu 99.9 2.4E-26 5.2E-31 270.8 21.7 137 139-283 759-905 (1809)
383 cd03240 ABC_Rad50 The catalyti 99.9 8.3E-27 1.8E-31 223.5 12.9 164 74-270 15-197 (204)
384 PRK00349 uvrA excinuclease ABC 99.9 2.4E-25 5.3E-30 252.5 22.5 125 143-283 792-926 (943)
385 COG4170 SapD ABC-type antimicr 99.9 4.5E-26 9.8E-31 212.1 11.0 229 52-284 4-248 (330)
386 TIGR00630 uvra excinuclease AB 99.9 2.2E-24 4.7E-29 244.4 22.7 125 142-282 789-923 (924)
387 KOG0927 Predicted transporter 99.9 3.6E-25 7.8E-30 230.1 13.5 214 50-282 74-307 (614)
388 COG1245 Predicted ATPase, RNas 99.9 1.8E-24 4E-29 220.7 16.6 190 49-269 340-530 (591)
389 KOG0927 Predicted transporter 99.9 7.6E-25 1.7E-29 227.7 10.4 202 48-279 386-591 (614)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.9 3.8E-24 8.1E-29 204.2 13.8 168 72-272 12-192 (198)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3.2E-24 7E-29 211.4 10.1 179 79-269 20-232 (247)
392 KOG0062 ATPase component of AB 99.9 5E-24 1.1E-28 220.5 9.8 204 49-282 78-283 (582)
393 KOG0060 Long-chain acyl-CoA tr 99.9 2E-22 4.3E-27 211.1 17.5 204 50-270 432-641 (659)
394 KOG0066 eIF2-interacting prote 99.9 2.3E-22 5.1E-27 203.9 13.4 191 49-270 584-776 (807)
395 KOG2355 Predicted ABC-type tra 99.9 1.1E-21 2.5E-26 182.3 16.7 210 50-284 12-237 (291)
396 cd03280 ABC_MutS2 MutS2 homolo 99.9 5.9E-22 1.3E-26 189.2 11.4 146 72-277 17-172 (200)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1.2E-21 2.6E-26 188.9 13.4 81 191-272 123-211 (213)
398 COG1245 Predicted ATPase, RNas 99.9 9.8E-22 2.1E-26 200.9 10.4 169 78-270 96-288 (591)
399 KOG0062 ATPase component of AB 99.9 7.6E-21 1.6E-25 197.1 16.3 197 50-275 361-559 (582)
400 cd03239 ABC_SMC_head The struc 99.8 3.6E-20 7.8E-25 173.8 15.6 74 195-270 95-172 (178)
401 PRK00635 excinuclease ABC subu 99.8 6.1E-19 1.3E-23 208.6 21.9 128 142-284 1660-1796(1809)
402 COG0178 UvrA Excinuclease ATPa 99.8 5.3E-19 1.1E-23 191.6 19.2 128 142-284 783-919 (935)
403 cd03283 ABC_MutS-like MutS-lik 99.8 5.6E-20 1.2E-24 175.6 10.3 146 69-267 14-162 (199)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.8 4.1E-20 9E-25 179.3 8.2 153 68-278 16-175 (222)
405 KOG0064 Peroxisomal long-chain 99.8 1.3E-19 2.7E-24 188.0 11.6 194 50-266 480-679 (728)
406 COG2401 ABC-type ATPase fused 99.8 4.5E-19 9.7E-24 179.6 13.9 185 68-273 395-587 (593)
407 cd03241 ABC_RecN RecN ATPase i 99.8 7E-19 1.5E-23 176.3 15.2 76 194-272 170-249 (276)
408 cd03227 ABC_Class2 ABC-type Cl 99.8 3.1E-19 6.8E-24 164.8 11.2 75 194-270 77-155 (162)
409 PRK00349 uvrA excinuclease ABC 99.8 3E-18 6.5E-23 195.0 15.0 136 140-283 434-584 (943)
410 cd03243 ABC_MutS_homologs The 99.8 6E-19 1.3E-23 168.7 6.6 154 75-281 22-176 (202)
411 TIGR00630 uvra excinuclease AB 99.8 6.2E-18 1.3E-22 192.1 15.6 135 141-283 433-582 (924)
412 KOG0066 eIF2-interacting prote 99.8 7E-19 1.5E-23 178.8 7.0 209 49-278 262-493 (807)
413 cd03242 ABC_RecF RecF is a rec 99.7 4.7E-17 1E-21 162.6 16.9 77 192-273 181-269 (270)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 2.9E-17 6.3E-22 157.4 8.4 135 68-254 15-151 (204)
415 cd03284 ABC_MutS1 MutS1 homolo 99.7 1E-16 2.2E-21 155.0 11.0 157 69-283 18-180 (216)
416 KOG0063 RNAse L inhibitor, ABC 99.6 3.1E-15 6.7E-20 152.4 12.2 178 68-269 348-531 (592)
417 TIGR02858 spore_III_AA stage I 99.6 4.1E-15 8.8E-20 148.1 10.9 138 83-282 112-267 (270)
418 smart00534 MUTSac ATPase domai 99.6 1.3E-15 2.9E-20 143.7 4.8 81 193-276 60-142 (185)
419 PRK00064 recF recombination pr 99.5 2.8E-13 6.1E-18 140.8 18.6 78 192-273 271-359 (361)
420 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.7E-14 3.7E-19 139.4 6.3 88 168-269 121-212 (220)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.5 2.3E-13 5E-18 131.3 12.3 128 71-254 18-154 (213)
422 TIGR01069 mutS2 MutS2 family p 99.5 5.5E-14 1.2E-18 158.3 7.8 128 75-254 314-445 (771)
423 cd00820 PEPCK_HprK Phosphoenol 99.4 2.4E-13 5.1E-18 116.3 6.6 72 69-152 2-78 (107)
424 cd03287 ABC_MSH3_euk MutS3 hom 99.4 1E-12 2.2E-17 127.4 9.4 138 69-262 18-160 (222)
425 KOG0063 RNAse L inhibitor, ABC 99.4 5.2E-13 1.1E-17 136.3 7.4 171 80-269 98-287 (592)
426 PTZ00132 GTP-binding nuclear p 99.4 7.1E-13 1.5E-17 127.6 6.8 48 195-242 151-205 (215)
427 TIGR00634 recN DNA repair prot 99.4 1.3E-12 2.8E-17 143.4 9.7 77 193-272 439-519 (563)
428 cd01128 rho_factor Transcripti 99.3 2.3E-12 5E-17 127.0 9.1 181 77-273 11-211 (249)
429 PRK07721 fliI flagellum-specif 99.3 2.6E-11 5.7E-16 128.3 17.6 174 68-281 145-340 (438)
430 TIGR00618 sbcc exonuclease Sbc 99.3 3.5E-12 7.7E-17 149.4 11.4 80 191-271 947-1036(1042)
431 PRK10869 recombination and rep 99.3 3.8E-12 8.2E-17 139.1 10.6 76 193-271 429-508 (553)
432 PRK00409 recombination and DNA 99.3 1.2E-12 2.6E-17 147.9 6.4 81 192-275 388-469 (782)
433 PRK08533 flagellar accessory p 99.3 1.9E-11 4.1E-16 119.4 13.0 150 78-269 20-184 (230)
434 PHA02562 46 endonuclease subun 99.3 2.9E-12 6.4E-17 140.6 7.9 79 191-273 465-555 (562)
435 COG0178 UvrA Excinuclease ATPa 99.3 4.1E-11 9E-16 130.9 14.4 137 140-284 426-577 (935)
436 cd01124 KaiC KaiC is a circadi 99.3 4.5E-11 9.8E-16 112.0 12.9 145 84-269 1-163 (187)
437 cd03286 ABC_MSH6_euk MutS6 hom 99.3 3.3E-11 7.1E-16 116.6 11.2 136 68-254 16-153 (218)
438 PF13304 AAA_21: AAA domain; P 99.3 1.8E-11 4E-16 117.4 9.5 63 192-254 234-299 (303)
439 PRK13695 putative NTPase; Prov 99.2 7.7E-12 1.7E-16 116.7 4.3 78 193-276 77-156 (174)
440 PRK03918 chromosome segregatio 99.2 5.8E-11 1.3E-15 137.1 10.3 77 191-269 785-867 (880)
441 PRK10246 exonuclease subunit S 99.1 1.2E-10 2.6E-15 136.3 11.0 79 191-270 946-1032(1047)
442 PRK06793 fliI flagellum-specif 99.1 2E-10 4.4E-15 120.9 11.1 169 52-279 131-306 (432)
443 TIGR00606 rad50 rad50. This fa 99.1 1.9E-10 4.1E-15 137.6 11.4 76 184-262 1191-1277(1311)
444 TIGR02788 VirB11 P-type DNA tr 99.1 1.9E-10 4E-15 117.3 9.5 142 75-283 137-280 (308)
445 PRK13830 conjugal transfer pro 99.1 1.5E-09 3.2E-14 124.1 16.6 69 210-279 650-728 (818)
446 cd01120 RecA-like_NTPases RecA 99.1 8.3E-10 1.8E-14 99.9 11.1 62 195-256 68-139 (165)
447 PRK01156 chromosome segregatio 99.1 3.7E-10 7.9E-15 130.8 10.9 77 191-269 798-883 (895)
448 COG3910 Predicted ATPase [Gene 99.1 2.6E-09 5.7E-14 99.0 13.0 76 193-271 128-204 (233)
449 TIGR02168 SMC_prok_B chromosom 99.0 5.1E-10 1.1E-14 132.4 7.6 76 191-269 1086-1165(1179)
450 PRK06067 flagellar accessory p 99.0 1.6E-08 3.5E-13 98.8 16.6 162 70-269 12-186 (234)
451 PRK02224 chromosome segregatio 98.9 3.1E-09 6.6E-14 123.0 9.5 77 192-270 779-868 (880)
452 TIGR02169 SMC_prok_A chromosom 98.9 2.8E-09 6.1E-14 126.3 8.8 76 191-269 1071-1150(1164)
453 cd01125 repA Hexameric Replica 98.9 1.1E-08 2.4E-13 100.3 11.5 135 82-254 1-159 (239)
454 cd01131 PilT Pilus retraction 98.9 8.4E-09 1.8E-13 98.4 10.3 57 204-269 66-122 (198)
455 PRK06995 flhF flagellar biosyn 98.9 6.4E-09 1.4E-13 111.1 10.4 151 70-252 244-400 (484)
456 TIGR03238 dnd_assoc_3 dnd syst 98.9 1.9E-09 4.1E-14 113.7 4.8 50 69-123 19-69 (504)
457 smart00382 AAA ATPases associa 98.7 3.3E-07 7.2E-12 79.6 14.6 118 81-252 1-124 (148)
458 PRK07196 fliI flagellum-specif 98.7 2.4E-08 5.1E-13 105.4 5.8 173 68-276 142-333 (434)
459 TIGR02655 circ_KaiC circadian 98.6 1.2E-08 2.7E-13 110.2 3.3 166 70-269 8-190 (484)
460 TIGR00611 recf recF protein. A 98.6 5E-08 1.1E-12 101.7 7.2 59 193-254 274-341 (365)
461 COG0419 SbcC ATPase involved i 98.6 1E-07 2.3E-12 110.5 10.6 78 191-270 812-897 (908)
462 PRK13891 conjugal transfer pro 98.6 1.1E-06 2.5E-11 101.0 18.0 69 205-274 680-751 (852)
463 cd02023 UMPK Uridine monophosp 98.6 5.6E-08 1.2E-12 92.4 5.3 112 84-227 1-113 (198)
464 cd01130 VirB11-like_ATPase Typ 98.6 1.4E-07 3E-12 89.1 7.9 81 71-154 14-98 (186)
465 PRK14079 recF recombination pr 98.6 1.2E-07 2.5E-12 98.4 8.0 73 194-274 263-344 (349)
466 TIGR01420 pilT_fam pilus retra 98.6 2.5E-07 5.4E-12 95.8 9.8 56 204-268 187-242 (343)
467 TIGR03881 KaiC_arch_4 KaiC dom 98.5 6.6E-08 1.4E-12 94.0 5.0 33 71-103 8-41 (229)
468 PRK06002 fliI flagellum-specif 98.5 2.4E-07 5.1E-12 98.1 8.1 84 47-138 135-230 (450)
469 PRK05399 DNA mismatch repair p 98.5 2.3E-07 5E-12 106.5 8.5 138 69-264 595-738 (854)
470 TIGR01026 fliI_yscN ATPase Fli 98.5 2.6E-06 5.5E-11 90.7 15.0 173 68-281 150-345 (440)
471 TIGR00767 rho transcription te 98.4 4.1E-07 8.9E-12 94.7 7.4 81 2-107 102-193 (415)
472 PLN03210 Resistant to P. syrin 98.4 8E-07 1.7E-11 105.7 10.0 164 73-291 198-365 (1153)
473 TIGR02680 conserved hypothetic 98.4 4.3E-07 9.2E-12 109.0 7.4 61 191-254 1244-1316(1353)
474 PRK13898 type IV secretion sys 98.3 1.6E-05 3.4E-10 91.4 17.5 48 208-255 638-686 (800)
475 cd01122 GP4d_helicase GP4d_hel 98.3 3.1E-05 6.6E-10 77.2 15.9 37 69-105 17-53 (271)
476 PRK09825 idnK D-gluconate kina 98.2 5.1E-07 1.1E-11 84.6 2.6 64 81-151 2-69 (176)
477 PRK06315 type III secretion sy 98.2 3.9E-06 8.4E-11 89.0 8.5 109 68-180 151-277 (442)
478 PF13555 AAA_29: P-loop contai 98.2 1.8E-06 4E-11 66.5 4.4 37 72-108 12-49 (62)
479 cd01876 YihA_EngB The YihA (En 98.2 3.7E-06 8E-11 75.9 6.3 64 169-240 101-169 (170)
480 PRK01889 GTPase RsgA; Reviewed 98.1 4.2E-06 9.2E-11 87.1 7.2 76 72-151 185-262 (356)
481 TIGR00152 dephospho-CoA kinase 98.1 2.4E-06 5.3E-11 80.6 4.6 72 197-270 60-132 (188)
482 TIGR00416 sms DNA repair prote 98.1 5E-06 1.1E-10 89.2 7.4 62 211-272 169-247 (454)
483 cd00009 AAA The AAA+ (ATPases 98.1 2.6E-05 5.7E-10 68.2 10.9 53 201-254 73-130 (151)
484 PF13558 SbcCD_C: Putative exo 98.1 6.1E-06 1.3E-10 68.7 6.3 49 191-239 29-90 (90)
485 PRK13873 conjugal transfer ATP 98.1 8.4E-05 1.8E-09 85.5 17.6 46 210-255 633-679 (811)
486 PF09818 ABC_ATPase: Predicted 98.1 8.9E-05 1.9E-09 77.7 15.8 79 194-273 322-416 (448)
487 PRK00454 engB GTP-binding prot 98.1 5.4E-05 1.2E-09 71.1 12.8 67 169-243 126-195 (196)
488 PRK08149 ATP synthase SpaL; Va 98.1 5.5E-06 1.2E-10 87.6 6.1 70 68-138 138-216 (428)
489 TIGR02903 spore_lon_C ATP-depe 98.0 1.3E-05 2.7E-10 89.2 9.1 111 81-239 174-291 (615)
490 PRK13764 ATPase; Provisional 98.0 4E-05 8.6E-10 84.3 12.4 64 209-280 321-401 (602)
491 PF00488 MutS_V: MutS domain V 98.0 1.9E-05 4.2E-10 77.4 9.0 45 210-254 120-166 (235)
492 TIGR03880 KaiC_arch_3 KaiC dom 98.0 9.4E-05 2E-09 71.7 13.5 59 211-269 106-177 (224)
493 TIGR00235 udk uridine kinase. 98.0 4.8E-06 1E-10 79.9 4.2 28 80-107 4-31 (207)
494 PRK09270 nucleoside triphospha 98.0 6.3E-06 1.4E-10 80.4 4.4 72 80-155 31-107 (229)
495 PRK07594 type III secretion sy 98.0 7.6E-06 1.7E-10 86.6 5.2 64 51-122 129-192 (433)
496 cd01136 ATPase_flagellum-secre 98.0 1.1E-05 2.4E-10 82.5 6.1 50 68-121 56-105 (326)
497 cd01121 Sms Sms (bacterial rad 98.0 2.2E-05 4.7E-10 82.1 8.4 61 211-271 157-234 (372)
498 TIGR02524 dot_icm_DotB Dot/Icm 98.0 4.5E-05 9.8E-10 79.3 10.6 28 80-107 132-159 (358)
499 TIGR00554 panK_bact pantothena 97.9 4.9E-06 1.1E-10 83.9 2.9 71 82-156 62-138 (290)
500 PRK10416 signal recognition pa 97.9 6.4E-06 1.4E-10 84.3 3.7 70 80-152 112-192 (318)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-73 Score=624.25 Aligned_cols=414 Identities=43% Similarity=0.665 Sum_probs=346.1
Q ss_pred CCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-
Q 010936 46 GDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK- 124 (497)
Q Consensus 46 ~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~- 124 (497)
...++.++|+|+++..+.+....+++|+|||++++|||++||+|||||||||||++|+|+...+...+|+|++||++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred ccccceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 3456789999999998754334588999999999999999999999999999999999999875568999999996543
Q ss_pred -CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 125 -~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..++.+|||.|+|.++|++||+|++.|++.+++|...+..+++++++++++++||.+|+|+.+|+...+++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 3356789999999999999999999999999999888899999999999999999999999999988899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+||.+|++||+||||||||||||+.++.++++.|++++++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCchhHHHHHhhcc--hhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHH-
Q 010936 284 EFFAQAGFPCPALRNPSDHFLRCINSD--FDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKE- 360 (497)
Q Consensus 284 ~~f~~~g~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~- 360 (497)
+||+..|++||.+.||+||++++++.+ ..... ...........++..+...+...
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 317 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVDSGTRELE----------------------EAVRIAKLINKFSQTDNLKKTLEA 317 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccCCCchhHH----------------------hHHHHHHHhhhccccchhhhhHHH
Confidence 999999999999999999999988753 11110 00111111222221000000000
Q ss_pred HHhhhhcccCccccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010936 361 KVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCAS 440 (497)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~~~~~~~~g~lf 440 (497)
....... .... .....++||.|+++|++|.+++.+|||.++..|+++++++|+++|++||+++++..+++++.|++|
T Consensus 318 ~~~~~~~--~~~~-~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~ 394 (613)
T KOG0061|consen 318 LEKSLST--SKKV-EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFF 394 (613)
T ss_pred Hhhhccc--cccc-ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Confidence 0000100 0000 111278999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhHHHHhHhhh-------cceeechhHHHHHhHhcccch
Q 010936 441 FVFGFVTFMSIG-GFPSFVEDMKV-------SLLIFYPTAVAKFIKRGVINI 484 (497)
Q Consensus 441 f~~~~~~f~~~~-~~~~~~~~r~~-------~~~~~~p~~~~~~~~~~~~~~ 484 (497)
|++.++.|.++. +++.|..||++ ..|....++.|+.+-+.|+.+
T Consensus 395 ~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~ 446 (613)
T KOG0061|consen 395 FILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLL 446 (613)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHH
Confidence 999999887765 46766666666 555566677788887888777
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.6e-69 Score=598.64 Aligned_cols=417 Identities=33% Similarity=0.532 Sum_probs=334.3
Q ss_pred CCceeEEEEEeEEEEEEccC------------------------CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHH
Q 010936 46 GDVSARLTWKDLTVMVTLSN------------------------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA 101 (497)
Q Consensus 46 ~~~~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~ 101 (497)
+..++.++|.|++|+.+..+ -+++.+|+|||+++++||++||+|||||||||||++
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 34578899999999986431 024679999999999999999999999999999999
Q ss_pred HHcCCCCCCCceeEEEECCEecCC-CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 010936 102 LSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (497)
Q Consensus 102 L~G~~~~~~~~~G~I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (497)
|+|+.+|+ ..+|+|.+||++... ..+.++||+|++.+++.+||+||+.|++.++.+...+.++++++++++++.+||.
T Consensus 114 LaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~ 192 (659)
T PLN03211 114 LAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT 192 (659)
T ss_pred HhCCCCCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh
Confidence 99998773 248999999997532 2356999999999999999999999988766554445566677899999999999
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHh
Q 010936 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE 260 (497)
Q Consensus 181 ~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~ 260 (497)
++.|+.+|+..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++.+
T Consensus 193 ~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 193 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999988899999999998767899
Q ss_pred cCCeEEEeeCCeEEEEeCchhHHHHHHhcCCCCCCCCCchhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHH
Q 010936 261 LFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAE 340 (497)
Q Consensus 261 ~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (497)
+||++++|++|++++.|+++++.+||+++|++||.+.||+||++++++.+... .+. ...+. ..
T Consensus 273 ~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~-----~~~-----~~~~~-------~~ 335 (659)
T PLN03211 273 MFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT-----DGV-----SEREK-------PN 335 (659)
T ss_pred hhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC-----CCc-----ccccc-------ch
Confidence 99999999999999999999999999999999999999999999987653210 000 00000 00
Q ss_pred HHHHHHHHHhhchhhHHHHHHHhh--hhc-c-------cCccc--cCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHH
Q 010936 341 AIKNLIDFYQTSQHSYAAKEKVEG--ISK-V-------KGTVL--DAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRL 408 (497)
Q Consensus 341 ~~~~~~~~~~~s~~~~~~~~~~~~--~~~-~-------~~~~~--~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~ 408 (497)
..+.+.+.|+.... ....+.... ... . ..... ....+.++|++|+.+|++|++++ +||+.+..+|+
T Consensus 336 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~ 413 (659)
T PLN03211 336 VKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRV 413 (659)
T ss_pred HHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHH
Confidence 11223334432110 000000000 000 0 00000 11235578999999999999988 89999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHhHhhh-------cceeechhHHHHHhHhc
Q 010936 409 VIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMS-IGGFPSFVEDMKV-------SLLIFYPTAVAKFIKRG 480 (497)
Q Consensus 409 ~~~i~~~l~~G~lf~~~~~~~~~~~~~~g~lff~~~~~~f~~-~~~~~~~~~~r~~-------~~~~~~p~~~~~~~~~~ 480 (497)
++++++|+++|++||+++ ..++++|.|++||+++++.+.+ ++.++.|..||++ +.|...++.+|+.+-|.
T Consensus 414 ~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~el 491 (659)
T PLN03211 414 FQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDL 491 (659)
T ss_pred HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999985 6789999999999988877654 4556666666655 78888999999999999
Q ss_pred ccch
Q 010936 481 VINI 484 (497)
Q Consensus 481 ~~~~ 484 (497)
|+.+
T Consensus 492 P~~~ 495 (659)
T PLN03211 492 PMEL 495 (659)
T ss_pred HHHH
Confidence 9988
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.5e-68 Score=589.51 Aligned_cols=396 Identities=36% Similarity=0.567 Sum_probs=333.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEcCCCCCCCCCCH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV 145 (497)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 5789999999999999999999999999999999999987754458999999997532 24578999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW-HLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsg 224 (497)
+|||.|++.++.+...+.++++++++++++.+||.+++|+.+|+. ..++|||||||||+||++|+.+|+++||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 999999998877666667777888999999999999999999974 3678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHhcCCCCCCCCCchhHHH
Q 010936 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFL 304 (497)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~ 304 (497)
||+.++..+++.|++++++|+|||+++|||+.++.++||++++|++|+++++|+++++.+||+++|++||...||+||++
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 276 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999998889999999999987899999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhcccC----c--cccCCCC
Q 010936 305 RCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVKG----T--VLDAGGS 378 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----~--~~~~~~~ 378 (497)
+++..+.... . ...+..+.+.+.|+.+....+..+.+.......+ . ......+
T Consensus 277 ~~~~~~~~~~---------------~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (617)
T TIGR00955 277 QVLAVIPGSE---------------N------ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGY 335 (617)
T ss_pred HHhhcCcccc---------------c------chHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccccccc
Confidence 8875431100 0 0112234455666665544443333221111000 0 0112456
Q ss_pred CCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHh-hhhHHH
Q 010936 379 QASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPSF 457 (497)
Q Consensus 379 ~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~~~~~~~~g~lff~~~~~~f~~~-~~~~~~ 457 (497)
..+|+.|+++|++|++++.+|||.++.+|+++++++|+++|++||++++++.++++|.|++||+++++.|.++ ..++.|
T Consensus 336 ~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f 415 (617)
T TIGR00955 336 NASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVF 415 (617)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999998888864 445555
Q ss_pred HhHhhh-------cceeechhHHHHHhHhcccch
Q 010936 458 VEDMKV-------SLLIFYPTAVAKFIKRGVINI 484 (497)
Q Consensus 458 ~~~r~~-------~~~~~~p~~~~~~~~~~~~~~ 484 (497)
..||++ ..|...++.+++++-+.|+.+
T Consensus 416 ~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~ 449 (617)
T TIGR00955 416 TAELPVFLRETRSGLYRVSAYFLAKTIAELPLFI 449 (617)
T ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHH
Confidence 555555 666777889999999988877
No 4
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.6e-70 Score=609.20 Aligned_cols=411 Identities=32% Similarity=0.494 Sum_probs=359.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-C-CcC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L-SFG 128 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-~-~~~ 128 (497)
...|+|+.+..+.. ++++++|+|||+.++||.++||||+||||||||||+|+|+...+ .++|+|++||.+.. . ..|
T Consensus 787 V~~w~dl~~~~~~q-G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R 864 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQ-GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFAR 864 (1391)
T ss_pred eEEEEeCCcccccc-ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhcc
Confidence 35677777776543 36788999999999999999999999999999999999997654 58999999999864 2 357
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.+|||.|+|.|.+.+||+|.|.|++.+|++..++.+++.+.++++++.++|++++|..||... .|||.+||||++||.+
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVE 943 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999866 9999999999999999
Q ss_pred HHhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee-CCeEEEEeCchh----H
Q 010936 209 ILMRP-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGETSA----A 282 (497)
Q Consensus 209 L~~~p-~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~-~G~iv~~G~~~~----~ 282 (497)
|+.+| .||||||||||||+.++..|++.++++++.|+||+|++|||+.++++.||++++|+ +|++||.|+..+ +
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999997 789999998654 6
Q ss_pred HHHHHhcC-CCCCCCCCchhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHH
Q 010936 283 FEFFAQAG-FPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (497)
Q Consensus 283 ~~~f~~~g-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (497)
++||++.| .+||...|||||+++++...... +...++.+.|+.|..+++..+.
T Consensus 1024 i~YFes~~~~~~~~~~NPA~~mLevi~~~~~~--------------------------~~~~D~a~~w~~S~e~k~~~e~ 1077 (1391)
T KOG0065|consen 1024 IEYFESIGGVKCISDENPAEWMLEVIGAGAEA--------------------------SLSVDFAEIWKNSEEYKRNKEL 1077 (1391)
T ss_pred HHHHHhcCCccCCCCCChHHHHHhhccccccc--------------------------ccCccHHHHHhccHHHHHHHHH
Confidence 67999976 89999999999999987643110 0112578899999999998888
Q ss_pred HhhhhcccCc----cccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010936 362 VEGISKVKGT----VLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGS 437 (497)
Q Consensus 362 ~~~~~~~~~~----~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~~~~~~~~g 437 (497)
++++...... ....++|.+|++.|++.+++|+++.+||+|.|+++|++..++.||++|+.||++|++..++||..|
T Consensus 1078 v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~ 1157 (1391)
T KOG0065|consen 1078 VKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMG 1157 (1391)
T ss_pred HHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHH
Confidence 8876543222 122567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhH--------HHHhHhhhcceeechhHHHHHhHhcccch-hhhhhh
Q 010936 438 CASFVFGFVTFMSIGGFP--------SFVEDMKVSLLIFYPTAVAKFIKRGVINI-SSVIFF 490 (497)
Q Consensus 438 ~lff~~~~~~f~~~~~~~--------~~~~~r~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~ 490 (497)
+.|+.+++..-.-.+..| .+.+||+.++|.+-|..+|+++-|.||++ ++++||
T Consensus 1158 a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~ 1219 (1391)
T KOG0065|consen 1158 AAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFF 1219 (1391)
T ss_pred HHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 998877665543332232 36677777999999999999999999999 777665
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.4e-67 Score=621.43 Aligned_cols=414 Identities=28% Similarity=0.431 Sum_probs=343.8
Q ss_pred eeEEEEEeEEEEEEccCC--------cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC
Q 010936 49 SARLTWKDLTVMVTLSNG--------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G 120 (497)
++.+.|+||+|.++.+.. +.+.+|+|||+++++|++++|+||||||||||||+|+|+.+++ ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 457999999999864321 2457999999999999999999999999999999999997643 3589999999
Q ss_pred EecCC--CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 121 HKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 121 ~~~~~--~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
.+... .++.+|||+|++.+++.+||+|||.|++.++.+...+.+++.++++++++.+||.+++|+.+|+..+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 87532 2356899999999999999999999998776655555666677899999999999999999997667899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC-CeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~-G~iv~~G 277 (497)
|||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++++|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999988999999999997678999999999996 8999999
Q ss_pred Cc----hhHHHHHHhc-CCC-CCCCCCchhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhh
Q 010936 278 ET----SAAFEFFAQA-GFP-CPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQT 351 (497)
Q Consensus 278 ~~----~~~~~~f~~~-g~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (497)
++ +++.+||+++ |.+ ||+..||+||+++++..+... ....++.+.|+.
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------------------~~~~d~~~~~~~ 1157 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------------------KLGIDFAEHYKS 1157 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------------------cccchHHHHHhc
Confidence 96 5789999997 664 999999999999876532100 001146677887
Q ss_pred chhhHHHHHHHhhhhcccCcc---ccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 010936 352 SQHSYAAKEKVEGISKVKGTV---LDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTG 428 (497)
Q Consensus 352 s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~ 428 (497)
|+.+++..+.+.......... ...+.+..||++|+++|++|+++++||||.++.+|+++++++|+++|++||+++++
T Consensus 1158 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~ 1237 (1470)
T PLN03140 1158 SSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTK 1237 (1470)
T ss_pred cHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 777666555444332211111 11356889999999999999999999999999999999999999999999999987
Q ss_pred h---hhHHHHHHHHHHHHHHHHHHHhhh-hHHHH-------hHhhhcceeechhHHHHHhHhcccch-hhhhh
Q 010936 429 Y---NSILARGSCASFVFGFVTFMSIGG-FPSFV-------EDMKVSLLIFYPTAVAKFIKRGVINI-SSVIF 489 (497)
Q Consensus 429 ~---~~~~~~~g~lff~~~~~~f~~~~~-~~~~~-------~~r~~~~~~~~p~~~~~~~~~~~~~~-~~~~~ 489 (497)
. .+++++.|++|++++++++..+.+ +|.|. +||..+.|...|+.+|+++-|.||.+ ++++|
T Consensus 1238 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if 1310 (1470)
T PLN03140 1238 RSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYY 1310 (1470)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 467788999999999888865533 35544 55555899999999999999999988 44443
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.5e-67 Score=622.63 Aligned_cols=421 Identities=25% Similarity=0.401 Sum_probs=343.8
Q ss_pred ceeEEEEEeEEEEEEcc---------------------------CCcccceeeceEEEEeCCeEEEEECCCCChHHHHHH
Q 010936 48 VSARLTWKDLTVMVTLS---------------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLD 100 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~---------------------------~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~ 100 (497)
+.+.+.|+||++..... +...+++|+|||+++++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 36779999998876221 112356999999999999999999999999999999
Q ss_pred HHHcCCCCC-CCceeEEEECCEecCC----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC----CCCHHHHHHH-H
Q 010936 101 ALSSRLASN-AFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD----KMPWSEKRTL-V 170 (497)
Q Consensus 101 ~L~G~~~~~-~~~~G~I~~~G~~~~~----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~----~~~~~~~~~~-v 170 (497)
+|+|+..+. ...+|+|.+||++... .++.++||+|++.+++.+||+||+.|++.++.+. ..+.++..++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999997421 1259999999987531 2346999999999999999999999998776442 2334443333 5
Q ss_pred HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q 010936 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIA 249 (497)
Q Consensus 171 ~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~ 249 (497)
+++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|+||||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999874 999999
Q ss_pred EeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHhcCCCCCCCCCchhHHHHHhhcchhhHHHhhccccccccccC
Q 010936 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETS 329 (497)
Q Consensus 250 ~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (497)
++|||+++++++||+|++|++|+++++|+++++.+||+++|++||++.||+||++++++.+..... .+ .+ .
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~---~~-----~e-~ 336 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIK---PG-----YE-K 336 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhcc---cc-----cc-c
Confidence 999988899999999999999999999999999999999999999999999999988765321110 00 00 0
Q ss_pred CCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhcc------------------cCccccCCCCCCcHHHHHHHHHH
Q 010936 330 DDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV------------------KGTVLDAGGSQASFLMQAFTLTK 391 (497)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~s~~~Q~~~l~~ 391 (497)
..+ ...+++.+.|+.|..+++..+.++..... .......+.+..|+++|+++|++
T Consensus 337 ~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~ 409 (1394)
T TIGR00956 337 KVP-------RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLA 409 (1394)
T ss_pred cCC-------CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHH
Confidence 001 11235667777776655444333321100 00011134578899999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhHhhh-------c
Q 010936 392 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV-------S 464 (497)
Q Consensus 392 R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~~~~~~~~g~lff~~~~~~f~~~~~~~~~~~~r~~-------~ 464 (497)
|+++++||||.++++|+++++++|+++|++||+++++++++++|.|++||++++++|+++.+++.++.||++ +
T Consensus 410 R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~ 489 (1394)
T TIGR00956 410 RNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYA 489 (1394)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999888888888 3
Q ss_pred ceeechhHHHHHhHhcccch
Q 010936 465 LLIFYPTAVAKFIKRGVINI 484 (497)
Q Consensus 465 ~~~~~p~~~~~~~~~~~~~~ 484 (497)
.|...++.+|+.+.+.|+.+
T Consensus 490 ~Y~~~ay~la~~l~~iP~~~ 509 (1394)
T TIGR00956 490 LYHPSADAIASIISEIPFKI 509 (1394)
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 44555667888888888876
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.3e-67 Score=618.72 Aligned_cols=412 Identities=31% Similarity=0.505 Sum_probs=342.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcC
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFG 128 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~ 128 (497)
..++|+||++.++.+. +.+.+|+|||+++++||++||+|||||||||||++|+|+.+++...+|+|.+||++... .++
T Consensus 758 ~~l~~~nl~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK-EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCC-CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 4589999999985322 34689999999999999999999999999999999999987433358999999998632 346
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++||+|++.+++.+||+||+.|++.++.+...+.+++.++++++++.+||.+++|+.+|+ ...+|||||||||+||++
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~-~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV-PGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCC-CCCCCCHHHhhHHHHHHH
Confidence 7999999999999999999999998877655556667778899999999999999999985 334899999999999999
Q ss_pred HHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC-eEEEEeCc----hhH
Q 010936 209 ILMRPR-LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG-KTVYFGET----SAA 282 (497)
Q Consensus 209 L~~~p~-lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G-~iv~~G~~----~~~ 282 (497)
|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++++|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999998889999999999976678899999999987 99999997 568
Q ss_pred HHHHHhcCC-CCCCCCCchhHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHH
Q 010936 283 FEFFAQAGF-PCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEK 361 (497)
Q Consensus 283 ~~~f~~~g~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (497)
.+||+..|+ +||+..||+||++++++.+... +....+.+.|+.|.......+.
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~--------------------------~~~~~~~~~~~~s~~~~~~~~~ 1049 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA--------------------------HANQDYHEVWRNSSEYQAVKNE 1049 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--------------------------chhccHHHHHhcCHHHHHHHHH
Confidence 899999996 9999999999999987542110 0011355667666555444433
Q ss_pred Hhhhhcc-c-C-c---cccCCCCCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHH
Q 010936 362 VEGISKV-K-G-T---VLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILAR 435 (497)
Q Consensus 362 ~~~~~~~-~-~-~---~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~~~~~~~ 435 (497)
+...... . . . ......+.+||++|+++|++|+++++||||.++++|+++++++|+++|++||+++++..++++|
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~ 1129 (1394)
T TIGR00956 1050 LDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQ 1129 (1394)
T ss_pred HHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3322111 0 0 0 0112467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHH--------HhHhhhcceeechhHHHHHhHhcccch-hhhhh
Q 010936 436 GSCASFVFGFVTFMSIGGFPSF--------VEDMKVSLLIFYPTAVAKFIKRGVINI-SSVIF 489 (497)
Q Consensus 436 ~g~lff~~~~~~f~~~~~~~~~--------~~~r~~~~~~~~p~~~~~~~~~~~~~~-~~~~~ 489 (497)
.|++|+++++..++..+.+|.| .+||..+.|.+.|+..++++-|.||.+ ++++|
T Consensus 1130 ~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if 1192 (1394)
T TIGR00956 1130 MFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIF 1192 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777655555543 456666889999999999999999998 55444
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-65 Score=604.73 Aligned_cols=423 Identities=25% Similarity=0.404 Sum_probs=340.3
Q ss_pred ceeEEEEEeEEEEEEcc-----------------------------CCcccceeeceEEEEeCCeEEEEECCCCChHHHH
Q 010936 48 VSARLTWKDLTVMVTLS-----------------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTL 98 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~-----------------------------~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTL 98 (497)
+.+.++|+||++..... +...++||+|||+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 56789999999976510 1124569999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-------CCCHHHH---
Q 010936 99 LDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-------KMPWSEK--- 166 (497)
Q Consensus 99 L~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-------~~~~~~~--- 166 (497)
||+|+|+++++...+|+|.+||++... .++.++||+|++.+++.+||+|||.|++.++.+. .....++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 999999998754568999999997532 2467999999999999999999999998765221 1111111
Q ss_pred ---------------------HHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010936 167 ---------------------RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225 (497)
Q Consensus 167 ---------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgL 225 (497)
...++++++.+||++++||.+|+..+++|||||||||+||++|+.+|+++||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12357799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHhcCCCCCCCCCchhHHH
Q 010936 226 DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFL 304 (497)
Q Consensus 226 D~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~ 304 (497)
|+.++.++++.|+++++ .|+|||+++|||.++++++||+|++|++|+++|+|+++++.+||+++|+.||++.||+||++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999987 59999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhcc---cCccccCCCCCCc
Q 010936 305 RCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKV---KGTVLDAGGSQAS 381 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s 381 (497)
++++...... . +.....|.... ..+++.+.|+.+..++...+.+...... .......+.|..+
T Consensus 448 ~v~s~~~~~~--~--------~~~~~~p~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s 513 (1470)
T PLN03140 448 EVTSKKDQEQ--Y--------WADRNKPYRYI----SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP 513 (1470)
T ss_pred HhcCchhhhh--h--------hhccCCccccC----CHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCC
Confidence 8876432110 0 00011111111 1235778888887666555444322111 1111123568899
Q ss_pred HHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 010936 382 FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSIGGFPSFV 458 (497)
Q Consensus 382 ~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~~~~---~~~~~~~g~lff~~~~~~f~~~~~~~~~~ 458 (497)
++.|++.|++|++++++||+.++..|+++.+++|+++|++||+++.++ .+.+.+.|++||++++++|.++++++.++
T Consensus 514 ~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~ 593 (1470)
T PLN03140 514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMI 593 (1470)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997543 34567788899999999999988888888
Q ss_pred hHhhh-------cceeechhHHHHHhHhcccch
Q 010936 459 EDMKV-------SLLIFYPTAVAKFIKRGVINI 484 (497)
Q Consensus 459 ~~r~~-------~~~~~~p~~~~~~~~~~~~~~ 484 (497)
.+|++ ..|.-+++.+++.+-+.|+.+
T Consensus 594 ~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~ 626 (1470)
T PLN03140 594 QRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISI 626 (1470)
T ss_pred hccchhHHhhhccCcCHHHHHHHHHHHHHHHHH
Confidence 88887 334444556677777888776
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-58 Score=514.93 Aligned_cols=402 Identities=30% Similarity=0.509 Sum_probs=340.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCcEEEEcCCCCCCCCCCHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
.++|+|+|+-++||+++.++||+||||||||++|+|-++.....+|+|.+||.+.+. .++.++|++|+|.++|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 479999999999999999999999999999999999987655567899999987543 246799999999999999999
Q ss_pred HHHHHHhhccCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010936 147 ETISYSARLRLPDK----MPWSEKRT-LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 147 e~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEP 221 (497)
|+|.|+++++.+.. ..+.++.+ ..+.+++.+||++|+||+||+...+++||||||||+||.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999987632 22333222 57789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHhcCCCCCCCCCch
Q 010936 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~ 300 (497)
|+|||+.++.++++.|+++++ .+.|++++.|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||++.+++
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 999999999999999999998 4899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcchhhHHHhhccccccccccCCCcccccchHHHHHHHHHHHhhchhhHHHHHHHhhhhccc---CccccCCC
Q 010936 301 DHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEGISKVK---GTVLDAGG 377 (497)
Q Consensus 301 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~ 377 (497)
||+.++++.. +. ...+.....+..... ..++.+.|..++.+.+....++...... ......+.
T Consensus 368 DfLt~vts~k-~~---------~~~~~~~~~~~~~~~----~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~ 433 (1391)
T KOG0065|consen 368 DFLTEVTSKK-DQ---------EQYWNKRSKPYPYTS----VSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSK 433 (1391)
T ss_pred HHHHHhhcCc-cc---------cccccccCCCcccCC----HHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCc
Confidence 9998887621 10 001111222222222 2357788888888888776666543221 12223678
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 010936 378 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVG-TGYNSILARGSCASFVFGFVTFMSIGGFPS 456 (497)
Q Consensus 378 ~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~lf~~~~-~~~~~~~~~~g~lff~~~~~~f~~~~~~~~ 456 (497)
|..++|.|++.|++|.|+.+.||..++..++++.+++|+++|++||+.+ .+..+.+.|+|++||++++.+|.++++++.
T Consensus 434 y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~ 513 (1391)
T KOG0065|consen 434 YSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIAL 513 (1391)
T ss_pred eeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHH
Confidence 8999999999999999999999999999999999999999999999999 888889999999999999999999999999
Q ss_pred HHhHhhh----cceeechhHHH---HHhHhcccch
Q 010936 457 FVEDMKV----SLLIFYPTAVA---KFIKRGVINI 484 (497)
Q Consensus 457 ~~~~r~~----~~~~~~p~~~~---~~~~~~~~~~ 484 (497)
.++.|++ +.+.+||.++. -.+-+.|..+
T Consensus 514 ~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~ 548 (1391)
T KOG0065|consen 514 TFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSF 548 (1391)
T ss_pred HHhhcchHHHhhcccccChHHHHHHHHHHhCcHHH
Confidence 9999999 56666665533 2344666655
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-55 Score=412.30 Aligned_cols=217 Identities=31% Similarity=0.438 Sum_probs=199.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.|+++||+++| +..++|+|||++|++||+++|+|||||||||||+||+|+..++ +|+|.++|.+..
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHH
Confidence 58999999999 5788999999999999999999999999999999999999986 999999997542
Q ss_pred CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 125 ~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..++++|+|||+.+|||++||.||+.++...- .+.++++.++++.++|+++||.+.+|. ||.+|||||||||+
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVA 146 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVA 146 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHH
Confidence 12467999999999999999999999986432 256788888999999999999998876 77899999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|+++|+|||||+|||+...++++.+++|+++|.|.|++||+. ..+.+.+|||+.|++|+++..|++++++
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999999999999999995 6899999999999999999999988753
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=399.90 Aligned_cols=227 Identities=25% Similarity=0.435 Sum_probs=205.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
+++++|+|+.| .++.+++|+||+|++||+++++|||||||||+||+|.+++.|+ +|+|++||+++..
T Consensus 1 MI~~~nvsk~y-----~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 1 MIEFENVSKRY-----GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVE 72 (309)
T ss_pred Cceeeeeehhc-----CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHH
Confidence 37899999999 4688999999999999999999999999999999999999996 9999999998643
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCCHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.||||-|...|||++||.||+.+...+. ++++++.+++++++|+.+||+. +.++ +|++|||||+|||
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----yP~eLSGGQQQRV 144 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADR-----YPHELSGGQQQRV 144 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhc-----CchhcCcchhhHH
Confidence 2478999999999999999999999987765 5678888999999999999974 4444 8899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
.+||||+.+|++||||||+++|||.++.++.+.++++.++ |+|||++|||. +|+..++|||.+|++|+++.+++|+++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 99999999995 799999999999999999999999987
Q ss_pred HHHHHhcCCCCCCCCCchhHHHHHh
Q 010936 283 FEFFAQAGFPCPALRNPSDHFLRCI 307 (497)
Q Consensus 283 ~~~f~~~g~~~~~~~~~~d~~~~~~ 307 (497)
+. ||++.|....
T Consensus 224 l~-------------~Pan~FV~~f 235 (309)
T COG1125 224 LA-------------NPANDFVEDF 235 (309)
T ss_pred Hh-------------CccHHHHHHH
Confidence 64 6666666543
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-52 Score=411.08 Aligned_cols=221 Identities=27% Similarity=0.392 Sum_probs=201.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
+|+++++++.|.....+...+|+|||++|++||++||+|.||||||||++++.++..|+ +|+|.++|.++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHH
Confidence 37899999999643223457999999999999999999999999999999999999996 999999998742
Q ss_pred --CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 125 --LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 125 --~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+++||++||+.+|+...||+||+.|.+.+. +.++++.++++.++|+.+||++..+. ||.+||||||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQR 149 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQR 149 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhH
Confidence 12468999999999999999999999998875 47788999999999999999988776 778999999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+|||||+.+|+|||+|||||+|||.+...|+++|+++.++ |.||+++||++ +-+.++||||.+|++|++++.|+..+
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHH
Confidence 99999999999999999999999999999999999999875 99999999995 78999999999999999999999887
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
++
T Consensus 229 vF 230 (339)
T COG1135 229 VF 230 (339)
T ss_pred hh
Confidence 64
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-51 Score=389.55 Aligned_cols=220 Identities=33% Similarity=0.469 Sum_probs=200.8
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
...|++++|++++ +++.|++||||+|++||+++|+||||+|||||||+|.|+++|+ +|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 6 EPLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSE 77 (263)
T ss_pred cceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCH
Confidence 4569999999999 6789999999999999999999999999999999999999996 9999999997521
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGe 199 (497)
.++++|++||...||..|||+||+.|..+-+ ...+++..++.+..-|+.+||... ++ .+|.+|||||
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~-----~~PsELSGGM 150 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAAD-----LYPSELSGGM 150 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhh-----hCchhhcchH
Confidence 1367999999999999999999999986654 356788888889999999999765 43 4788999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
+||++||||++.||+|+|+||||+||||.++..+-++|+++.+. |.|+|++|||. ++++.+||++++|.+|++++.|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999886 99999999995 68999999999999999999999
Q ss_pred chhHHH
Q 010936 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
++++..
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 998764
No 14
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-51 Score=392.87 Aligned_cols=204 Identities=32% Similarity=0.425 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.+.++++++.| +...+|+|||++|.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+.......+
T Consensus 3 ~l~i~~v~~~f-----~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSF-----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEe-----CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCCE
Confidence 58899999999 3478999999999999999999999999999999999999996 999999999875555789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+||||++.++|.+||.||+.++.... ..++++.++++.++|+.+||.+..|. +|++|||||||||+|||||+
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHh
Confidence 99999999999999999999998765 24566677799999999999988876 78899999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
.+|+||+||||+++||+.++..+.+.|.++.+ .++||+++|||. +|+..++|||++|.++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999876 489999999996 7899999999999984
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.6e-51 Score=409.07 Aligned_cols=220 Identities=37% Similarity=0.521 Sum_probs=197.5
Q ss_pred EEEEEeEEEEEEccCCc-ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 51 RLTWKDLTVMVTLSNGE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
.++++||++.| + .+.+|+||||++++|+++||+||||||||||||+|+|++.|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~-----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKY-----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEe-----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHH
Confidence 47889999999 4 578999999999999999999999999999999999999996 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++++||+||++.+++.+||+|||.|.+.++... ....+++++++++.+||.+..++++ ++||+||||||+|
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~i 147 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSI 147 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHH
Confidence 2467999999999999999999999999987432 2445678999999999998555544 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|+||+++|++|||||||+||||.++.++++.|++++++| +||++|||++ .++..+||+|++|++|++++.|+++++..
T Consensus 148 a~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 148 ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999986 8999999996 68999999999999999999999888766
Q ss_pred HHH
Q 010936 285 FFA 287 (497)
Q Consensus 285 ~f~ 287 (497)
.+.
T Consensus 227 ~~~ 229 (293)
T COG1131 227 KFG 229 (293)
T ss_pred hhc
Confidence 543
No 16
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.8e-51 Score=398.03 Aligned_cols=219 Identities=35% Similarity=0.444 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++||++.| +++.+|+|+||++++|++++|+||||||||||||+|+|+++|. +|+|+++|+++..
T Consensus 2 ~L~~~~ls~~y-----~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGY-----GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEE-----CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHH
Confidence 58999999999 4688999999999999999999999999999999999999986 9999999998532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++||||.+...+.+||+|.+.++..-+... ....++.++.+++.|+.+|+.+.+++.+. +|||||||||.
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~ 148 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVL 148 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHH
Confidence 2367999999998888899999999985432211 11123334578999999999999998764 69999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+++|++||||||||.||..++.+++++++++++ +|+|||+++||+ +.+.++||++++|++|+++..|++++++
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999996 599999999996 6899999999999999999999998876
No 17
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.2e-50 Score=386.23 Aligned_cols=209 Identities=32% Similarity=0.477 Sum_probs=183.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------- 124 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------- 124 (497)
++++||++.|..+.. ...+|++|||+|++||+++|+|||||||||||++|.|+..|+ +|.|.++|.+..
T Consensus 2 i~~~~v~k~y~~~~~-~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGE-KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCc-ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHH
Confidence 568999999865432 267999999999999999999999999999999999999996 999999998642
Q ss_pred --CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 125 --LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 125 --~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.+++.+|||+|+.+|.|.+||.||+.+.+.+. ..+....+++++++++.+||.+..+. .+|.+||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqqQR 150 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQQR 150 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHHHH
Confidence 12467999999999999999999999987654 22333566778899999999876652 2567899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|+|||||+.+|+++|+||||.+||+.++..|+++|++++++ |+|||++|||+ ++..+|||++.|.+|++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999875 99999999995 68999999999999984
No 18
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-50 Score=406.50 Aligned_cols=217 Identities=29% Similarity=0.465 Sum_probs=200.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| ++..+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+... ..
T Consensus 3 ~i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhH
Confidence 58999999999 2222999999999999999999999999999999999999996 9999999998643 34
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.+++|||+..|||+|||+||+.|+++.+ ..++++.++++.++.+.++|++..|+ +|++|||||||||+|||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVALAR 146 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHHHH
Confidence 78999999999999999999999998875 56788889999999999999999988 46789999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+++|+++|||||.|+||...+..+...|+++.++ |.|+|.+|||. .|+..++|||.+|++|++...|++.++..
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 999999999999999999999999999999999875 99999999995 68999999999999999999999998753
No 19
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-50 Score=387.38 Aligned_cols=218 Identities=30% Similarity=0.467 Sum_probs=189.4
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC--c
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--F 127 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--~ 127 (497)
..|+++|+++.|. .+++|+||||++++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+.... .
T Consensus 3 ~~i~v~nl~v~y~-----~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYG-----NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEEC-----CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccC
Confidence 3589999999993 236999999999999999999999999999999999999996 99999999875433 3
Q ss_pred CcEEEEcCCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 128 GTAAYVTQDD---NLIGTLTVRETISYSARLRLP--DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 128 ~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.+||||||.. .-|| +||+|.+.++...+.. ...+ +..++.++++|+.+|+.+.+|+.+| +|||||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QR 147 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQR 147 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHH
Confidence 6799999964 3345 6999999998443221 1122 2336789999999999999999887 599999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||+ ..+.++||+|++|+ +++++.|+++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 9999999999999999999999999999999999999999999999999996 68999999999995 678899999887
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
.+
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 53
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-50 Score=408.41 Aligned_cols=218 Identities=27% Similarity=0.460 Sum_probs=199.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~ 126 (497)
..++++||++.| ++..+|+|+|++|++||+++|+|||||||||||++|+|+..|+ +|+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~y-----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSF-----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeec-----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChh
Confidence 358999999999 4688999999999999999999999999999999999999996 9999999998642 3
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++.+|+|||+-.|||+|||+||+.|+++.+ ....+++.++++.++++.++|.+..++ ++.+|||||+|||+||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALA 148 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALA 148 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHH
Confidence 578999999999999999999999998743 234456788899999999999998776 5678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||. .|+..++|||.+|++|++.-.|+++++-
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 9999999999999999999999999999999999875 99999999995 7999999999999999999999999873
No 21
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-50 Score=372.30 Aligned_cols=218 Identities=31% Similarity=0.425 Sum_probs=200.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC----CC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----LS 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~----~~ 126 (497)
++++.+++++|+ ...++++||||+++.||++||+|||||||||+|++|++++.|+ +|.|+++|.+.. ..
T Consensus 1 Ml~v~~l~K~y~----~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 1 MLEVTDLTKSYG----SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred Ceeeeehhhhcc----CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHH
Confidence 378899999994 2345999999999999999999999999999999999999996 999999998742 23
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++++|.++.+..+|..||++|||.|.+.+. ++...+.+++++++.+.|+|.++.|+.+| ++|.||||||+||
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iA 145 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIA 145 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHH
Confidence 578999998889999999999999999886 56778888999999999999999999887 5999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|||+++|++++|||||||||..++..+.+.+++++++|++||++||.. .++..+||+|++|++|++++.|+++++..
T Consensus 146 RAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999999998999999999995 79999999999999999999999987654
No 22
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-50 Score=389.53 Aligned_cols=220 Identities=29% Similarity=0.445 Sum_probs=199.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE---ecCC-
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~~~- 125 (497)
|+|.++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|+..|+ .|.|.+||+ +.+.
T Consensus 1 m~i~i~~~~~~~-----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 1 MSIRINNVKKRF-----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNL 72 (345)
T ss_pred Cceeehhhhhhc-----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhcc
Confidence 458889999988 4678999999999999999999999999999999999999996 999999999 4322
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..++||||+|+..+|++|||.+|+.|++..+ ....+..+.+.++.++|+.+.|++..++ ||.+|||||||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRV 146 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRV 146 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHH
Confidence 2468999999999999999999999998776 2234567788999999999999987776 7889999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++||||||+++||..-+.++.+.|+++.+. |.|++++|||+ ++++++||||++|++|+|...|+++++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999999876 99999999996 799999999999999999999999987
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
.+
T Consensus 226 ~~ 227 (345)
T COG1118 226 YD 227 (345)
T ss_pred hc
Confidence 53
No 23
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-50 Score=377.53 Aligned_cols=222 Identities=28% Similarity=0.400 Sum_probs=195.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
+.|+++||++.|+ +++++|+||||+|++||+++|+|||||||||||++|+|+.+|+ +|+|.+||.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchH
Confidence 4699999999996 4688999999999999999999999999999999999999886 9999999976421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (497)
.++++||++|+++|.+.+||.+|+..+..-+.+. ++..++.+..+-+.|+++|+.+.+.++.+ +||
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LS 149 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLS 149 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCC
Confidence 1467999999999999999999999885433221 22234455678889999999988877654 699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
|||+|||+|||||+.+|+|+|.|||+++|||.++..+++.|+++++ +|.|||++.|+. +.+.++||||+-|++|+++|
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999999987 599999999995 78999999999999999999
Q ss_pred EeCchhHHH
Q 010936 276 FGETSAAFE 284 (497)
Q Consensus 276 ~G~~~~~~~ 284 (497)
.|+++++.+
T Consensus 229 Dg~~~el~~ 237 (258)
T COG3638 229 DGPASELTD 237 (258)
T ss_pred eCChhhhhH
Confidence 999988654
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3e-48 Score=393.74 Aligned_cols=217 Identities=30% Similarity=0.443 Sum_probs=194.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~ 126 (497)
.++++||++.| +++.+|+||||++++||++||+||||||||||+++|+|+++|+ +|+|+++|.+... .
T Consensus 7 ~i~i~~l~k~~-----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRY-----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEE-----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHH
Confidence 58999999999 3467999999999999999999999999999999999999986 8999999997532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++.+||+||++.+++.+||+||+.|.+..+ ..+..+...+++++++.++|.+..++.++ +|||||||||+||
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 150 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLA 150 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHH
Confidence 357999999999999999999999876653 23344455678899999999988888664 6999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999987899999999995 68999999999999999999999988754
No 25
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=8.5e-48 Score=394.93 Aligned_cols=219 Identities=26% Similarity=0.391 Sum_probs=193.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++||++.|..+ ...+.+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 2 I~~~~lsk~y~~~-~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQG-TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCC-CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999999421 11357999999999999999999999999999999999999986 9999999997532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|+||+..+++.+||+||+.+..... ..+..+.++++.++++.+||.+..|. ++.+|||||||||
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqkQRV 149 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHH
Confidence 1357999999999999999999999976543 23455666788999999999887776 4568999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||++||+.++..++++|++++++ |.|||++||++ +.+.++||+|++|++|++++.|+++++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999875 99999999995 678899999999999999999998876
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 229 ~ 229 (343)
T TIGR02314 229 F 229 (343)
T ss_pred H
Confidence 4
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-48 Score=357.43 Aligned_cols=212 Identities=29% Similarity=0.387 Sum_probs=192.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
+|+|+|+++.|. ..+.+|+||||.+++||++-|+||||||||||||+|.+..+|+ .|+|+++|.++.
T Consensus 1 mI~f~~V~k~Y~----~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~ 73 (223)
T COG2884 1 MIRFENVSKAYP----GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGRE 73 (223)
T ss_pred CeeehhhhhhcC----CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccc
Confidence 378999999995 3477999999999999999999999999999999999999996 999999999742
Q ss_pred --CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 125 --LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 125 --~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+++||+|+||..+.+..||+||+.|+.... +.+..+.++++.++|+.+||.+.++. .|.+|||||+||
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQR 145 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQR 145 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHH
Confidence 12478999999999999999999999998765 56678889999999999999987765 567899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|+||||++++|++||.||||.+|||..+.+|++++.++.+.|.||+++||| ...+..+-.|++.|++|+++....
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999999999999999999999 467778888999999999987543
No 27
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.2e-47 Score=396.02 Aligned_cols=217 Identities=27% Similarity=0.403 Sum_probs=195.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRF-----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEe-----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999986 9999999987532 24
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQRVALAR 147 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987543 344566677899999999999888764 5679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++ .++..+||+|++|++|+++..|+++++..
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999775 99999999996 68999999999999999999999988753
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=396.35 Aligned_cols=217 Identities=28% Similarity=0.419 Sum_probs=194.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++|+++.|. +.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999983 2367999999999999999999999999999999999999986 9999999997532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++||+|++.+||++||+||+.|+...+ ..+..+..++++++++.+||.+..++. +++|||||||||+|||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvalAR 147 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQRVAMGR 147 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 234556667899999999998887774 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999999999999999999999999999875 99999999996 6899999999999999999999998864
No 29
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-48 Score=362.79 Aligned_cols=222 Identities=27% Similarity=0.400 Sum_probs=194.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~-- 125 (497)
..++++||++.| +++++|+|||+.|++++++||||||||||||||+++..... |+...+|+|.++|+++..
T Consensus 6 ~~~~~~~l~~yY-----g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYY-----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEE-----CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 458999999999 57899999999999999999999999999999999998764 445678999999997522
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
.++++|+|||.|+.|| +|++||+.|+.++. +...++.++.++..|+...|++.-..++. ..+.+|||||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~---g~~~~~ldeiVe~sLk~AaLWdEVKDrL~-~sa~~LSGGQQ 155 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH---GIKDKELDEIVESSLKKAALWDEVKDRLH-KSALGLSGGQQ 155 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh---ccchHHHHHHHHHHHHHhHhHHHhHHHhh-CCccCCChhHH
Confidence 2578999999999999 89999999998876 23336778889999999999754333332 25668999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||++|||||+.+|+|||||||||+|||.+...|-++|.+|++ .-|||++||.+ ..+.++.|+..++..|+++++|+.+
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHH
Confidence 999999999999999999999999999999999999999985 58999999995 6899999999999999999999998
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
+++
T Consensus 234 ~iF 236 (253)
T COG1117 234 KIF 236 (253)
T ss_pred hhh
Confidence 764
No 30
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-48 Score=367.64 Aligned_cols=220 Identities=29% Similarity=0.389 Sum_probs=190.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||++.|..++. ..++|+||||++.+||++||+|+||||||||.++|+|+.+|+ +|+|.++|.+...
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccc
Confidence 46899999999954321 125999999999999999999999999999999999999996 9999999976422
Q ss_pred --CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHH
Q 010936 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 --~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGer 200 (497)
..+.+.+||||+ .+.|..||++.|.-+.... +.++.+ +++.++++.+||.+. +++ +|.+||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~~--~~i~~~L~~VgL~~~~l~R-----~P~eLSGGQ~ 147 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKSQ--QRIAELLDQVGLPPSFLDR-----RPHELSGGQR 147 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHHH--HHHHHHHHHcCCCHHHHhc-----CchhcChhHH
Confidence 356799999997 5789999999998876542 333333 449999999999754 333 7889999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||++|||||+.+|++||||||||+||+..+.+|+++|.+++++ |.|.|++|||. ..+..+||||++|++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999999885 89999999995 689999999999999999999999
Q ss_pred hhHHH
Q 010936 280 SAAFE 284 (497)
Q Consensus 280 ~~~~~ 284 (497)
+++..
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 88754
No 31
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.5e-47 Score=391.64 Aligned_cols=219 Identities=29% Similarity=0.418 Sum_probs=195.1
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
...|+++||++.| +++.+|+||||+|++|+++||+||||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 39 ~~~i~i~nl~k~y-----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 39 TVAIDLAGVSKSY-----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARAR 110 (340)
T ss_pred ceeEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchH
Confidence 3469999999999 3567999999999999999999999999999999999999986 9999999997532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.+||+||++.+++.+||.||+.+....+ ..+..+..++++++++.++|.+..++.++ +|||||||||+
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~ 182 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLT 182 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHH
Confidence 2357999999999999999999999866543 22334445667889999999988888664 69999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+||+++|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 183 lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 183 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999987899999999995 68999999999999999999999988754
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-47 Score=393.52 Aligned_cols=216 Identities=25% Similarity=0.453 Sum_probs=195.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++.. ..
T Consensus 6 ~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRF-----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEE-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999986 9999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++ +++.|||||||||+|||
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVALAR 149 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987643 24456667789999999999887776 45689999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ .++..+||+|++|++|+++..|+++++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999775 99999999996 6899999999999999999999998864
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.9e-47 Score=393.89 Aligned_cols=216 Identities=28% Similarity=0.434 Sum_probs=194.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCce--eEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS--GTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~--G~I~~~G~~~~~--- 125 (497)
.|+++||++.| +.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ + |+|.++|++...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~ 76 (362)
T TIGR03258 5 GIRIDHLRVAY-----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPP 76 (362)
T ss_pred EEEEEEEEEEE-----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCH
Confidence 38899999999 3467999999999999999999999999999999999999986 7 999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.++||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +++|||||||||+|
T Consensus 77 ~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRvaL 148 (362)
T TIGR03258 77 HKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRIAI 148 (362)
T ss_pred HHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHHHH
Confidence 2367999999999999999999999987543 244556677899999999999888775 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++||++ .++..+||+|++|++|+++..|+++++.
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 79999999995 6899999999999999999999998874
No 34
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-47 Score=371.39 Aligned_cols=215 Identities=31% Similarity=0.482 Sum_probs=187.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSF-----GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhH
Confidence 4689999998 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||+||+.++..... ..+..+..+++.++++.+||.+..++.+ .+|||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 145 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRV 145 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 13569999999999999999999998754221 2234445567888999999987776654 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++..+||++++|++|++++.|+++++
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999999999999999874 89999999996 578899999999999999999987764
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.2e-47 Score=390.62 Aligned_cols=220 Identities=25% Similarity=0.369 Sum_probs=194.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~ 126 (497)
|.|+++|+++.| +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|+++|++... .
T Consensus 1 ~~L~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 1 MSIEIANIKKSF-----GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHAR 72 (353)
T ss_pred CEEEEEEEEEEe-----CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 358999999999 3467999999999999999999999999999999999999886 8999999997532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.+.++||+|++.+||++||+||+.|+...... ...+..+..+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~QRval 147 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQKQRVAL 147 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHH
Confidence 35799999999999999999999998653211 1234455667899999999998877764 46799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ .++..+||+|++|++|++++.|+++++.
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999876 89999999996 6899999999999999999999998874
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7.3e-47 Score=392.39 Aligned_cols=217 Identities=26% Similarity=0.418 Sum_probs=194.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~ 126 (497)
..|+++|+++.| +.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 13 ~~L~l~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSF-----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEE-----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 358999999999 3467999999999999999999999999999999999999986 8999999997532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++||+|++.+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVaLA 156 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAIA 156 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHH
Confidence 367999999999999999999999986543 234555567789999999999887774 467999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ .++..++|+|++|++|+++..|+++++.
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999875 99999999996 6899999999999999999999998864
No 37
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1e-46 Score=382.27 Aligned_cols=218 Identities=29% Similarity=0.398 Sum_probs=191.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
+.|+++|+++.| +++.+|+||||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSY-----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEe-----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHH
Confidence 468999999999 3467999999999999999999999999999999999999886 8999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.++|++|++.+++.+||+||+.+....+ ..+..+..++++++++.++|.+..++.+ .+|||||||||+|
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~l 146 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTL 146 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHH
Confidence 1357999999999999999999998765432 2233444566788999999988877765 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +++.++||++++|++|++++.|+++++..
T Consensus 147 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 147 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999987899999999996 68889999999999999999999988653
No 38
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-47 Score=370.60 Aligned_cols=218 Identities=30% Similarity=0.432 Sum_probs=194.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.++++|+++.|+. ...+|+|+|+++++|+.++|+|+||||||||+++|+|+++|. +|.|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPG----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCC----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHH
Confidence 5889999999952 268999999999999999999999999999999999999996 899999998743
Q ss_pred CCcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 125 LSFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 125 ~~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..++.+|||+|++. .+..-||.|.+.|+.... +.+.++.+++++++++.+|+.+.+++ .+..|||||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqkqRv 147 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQKQRV 147 (235)
T ss_pred HhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcceeeH
Confidence 23578999999973 233459999999997654 56677889999999999999998776 5578999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||.+|+.+|++|+|||||||||+..+.++++.+++|.++ |+|+|++|||. +.+..+||++++|++|+++++|++.++
T Consensus 148 aIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 148 AIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999999999987 79999999995 789999999999999999999998776
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
..
T Consensus 227 ~~ 228 (235)
T COG1122 227 FN 228 (235)
T ss_pred hh
Confidence 54
No 39
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=362.99 Aligned_cols=216 Identities=31% Similarity=0.420 Sum_probs=185.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
++++|+++.|.... ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+.....+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccccCcEE
Confidence 46899999983110 1157999999999999999999999999999999999999885 8999999987654446799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
|++|++.+++.+||+||+.+....+ ........+.+.++++.+||.+..++.+ ..||||||||++||+||+.
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 9999999999899999999875432 1233344567889999999987766644 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee--CCeEEEEeCch
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 280 (497)
+|+++||||||+|||+.++..+++.|+++.+ .|+|||++||++ .++.++||++++|+ +|++++.++++
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999865 489999999996 57889999999999 79999888753
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-46 Score=363.73 Aligned_cols=213 Identities=30% Similarity=0.453 Sum_probs=186.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
|+++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKY-----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEE-----CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHh
Confidence 4689999998 3467999999999999999999999999999999999999885 9999999986431 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+....+ .....+..++++++++.++|.+..++.+ ..|||||||||+||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~ 144 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIAR 144 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHH
Confidence 46999999999999999999999875442 2233444567889999999987777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|+++..|++++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 145 SLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 999999999999999999999999999999999876 89999999996 67889999999999999999888765
No 41
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-46 Score=361.97 Aligned_cols=209 Identities=34% Similarity=0.493 Sum_probs=182.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeC-----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhc
Confidence 46889999983 467999999999999999999999999999999999999885 9999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.+..... ........+++.++++.++|.+..++.+ ..|||||||||+||||
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~a 144 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARA 144 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999875432 1233344567889999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ .++.++||++++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999987 489999999996 6788999999999999998765
No 42
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-46 Score=388.26 Aligned_cols=217 Identities=27% Similarity=0.396 Sum_probs=194.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~ 126 (497)
..|+++|+++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... .
T Consensus 18 ~~l~l~~v~~~~-----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 18 PLLEIRNLTKSF-----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPY 89 (377)
T ss_pred ceEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 359999999999 3467999999999999999999999999999999999999986 8999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.+|||+|++.+||++||.||+.|+...+ ..+..+.++++.++++.++|.+..++ ++.+|||||||||+||
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVALA 161 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHHH
Confidence 467999999999999999999999986543 23455667789999999999887776 4568999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999876 499999999996 6899999999999999999999998864
No 43
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-46 Score=366.23 Aligned_cols=219 Identities=27% Similarity=0.415 Sum_probs=188.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~ 126 (497)
|.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 1 MSIEVRNVSKRFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQ 72 (239)
T ss_pred CEEEEEeEEEEEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcc
Confidence 3589999999993 467999999999999999999999999999999999999885 8999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.+.++|++|++.+++.+||.||+.++...... ......+..+.++++++.+||.+..++.+ .+|||||||||+|
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 147 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVAL 147 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHH
Confidence 35699999999999999999999987543211 00122334456788999999987766644 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999999999999999999999875 89999999996 678899999999999999999988765
No 44
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.7e-46 Score=377.81 Aligned_cols=216 Identities=27% Similarity=0.411 Sum_probs=192.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~ 126 (497)
.++++|+++.| +++.+|+|+||++++||++||+|||||||||||++|+|+++|+ +|+|.++|.+... .
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLY-----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEE-----CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHH
Confidence 58999999999 3467999999999999999999999999999999999999886 9999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++.+||+||++.+++.+||.||+.+.+.++ +.+..+..++++++++.+||.+..++.+ +.|||||||||+||
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la 145 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLA 145 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999877653 2334445567889999999998888765 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+||+++|++|||||||+|||+.++..+++.|+++++ ++|||++||++ +++.++||++++|++|++++.|+.+++..
T Consensus 146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999965 79999999996 68999999999999999999999988754
No 45
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-46 Score=387.57 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=192.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---Cc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAY-----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhH
Confidence 48999999999 3467999999999999999999999999999999999999986 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++||+|+..+++.+||+||+.|+...+ ..+..+.+++++++++.+||.+..++.+ .+|||||||||+|||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAr 146 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGR 146 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999986543 2334555677899999999988777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++ +++..+||++++|++|+++..|+++++.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999775 89999999996 6889999999999999999999998764
No 46
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-47 Score=408.65 Aligned_cols=250 Identities=30% Similarity=0.452 Sum_probs=212.0
Q ss_pred CchhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 010936 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (497)
|++.+|++|++|+.+.+|..+-. +...|. ...-.|+|+||++.|+.+ ++.+||+|+||+++
T Consensus 432 mkgvGAs~rvFel~dr~P~i~~~--G~~~p~---------------~~~G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~ 492 (716)
T KOG0058|consen 432 MKGVGASERVFELMDRKPRIPLT--GTLAPD---------------HLQGVIEFEDVSFAYPTR--PDVPVLKNLSFTIR 492 (716)
T ss_pred HHhcchHHHHHHHhccCCCCCCC--Cccccc---------------cccceEEEEEeeeecCCC--CCchhhcCceeeeC
Confidence 68999999999999999997531 211110 123359999999999764 46789999999999
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
|||++||+||||+||||+.++|..++.|. +|+|.+||+|++. .+++||+|.|+|.||.. ||+|||.|+..
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~- 567 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD- 567 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-
Confidence 99999999999999999999999999996 9999999999643 24789999999999998 99999999965
Q ss_pred cCCCCCCHHHH-----HHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 010936 156 RLPDKMPWSEK-----RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 156 ~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
..+.++. .+.+++.+ .++++.+||.||+ +..+||||||||++|||||++||.||||||.||+||.++.
T Consensus 568 ----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 568 ----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESE 640 (716)
T ss_pred ----CCCHHHHHHHHHHhChHHHH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhH
Confidence 2233333 23344444 3678889999997 6678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
..+.+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++.|+.+|++.
T Consensus 641 ~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 641 YLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999998866 599999999964 568899999999999999999888764
No 47
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.3e-46 Score=363.84 Aligned_cols=214 Identities=28% Similarity=0.456 Sum_probs=186.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.| +.+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRY-----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEe-----CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHH
Confidence 4688999998 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.++|++|++.+++.+||+||+.+....+ .....+...+++++++.+++.+..++.+ ..|||||||||+|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 144 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEI 144 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHH
Confidence 1245999999999999999999999875432 1223344567889999999987777654 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+.+++
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999999999999999999999999999999987789999999996 578999999999999999999987764
No 48
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-46 Score=383.90 Aligned_cols=219 Identities=27% Similarity=0.425 Sum_probs=191.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++||++.|..+ ...+++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 2 i~i~~l~~~y~~~-~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQG-GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCC-CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHH
Confidence 7899999999421 11367999999999999999999999999999999999999886 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||+||+.+..... ..+..+.++++.++++.+||.+..++. +.+|||||||||
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv 149 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQKQRV 149 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHH
Confidence 1356999999999999999999999976543 233445556788999999998777764 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++.++||++++|++|++++.|+++++
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999775 89999999996 678899999999999999999998876
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 229 ~ 229 (343)
T PRK11153 229 F 229 (343)
T ss_pred H
Confidence 4
No 49
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.2e-46 Score=364.83 Aligned_cols=217 Identities=29% Similarity=0.404 Sum_probs=186.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. ++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEEC-----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHH
Confidence 46789999983 457999999999999999999999999999999999999885 8999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK-------MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
....++|++|++.+++.+||+||+.+......... ....+..+.+.++++.+||.+..++.+ ++||||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYG 147 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHH
Confidence 12459999999999999999999998754321110 012344567889999999987776644 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999999987889999999996 67889999999999999999998
Q ss_pred chhH
Q 010936 279 TSAA 282 (497)
Q Consensus 279 ~~~~ 282 (497)
++++
T Consensus 227 ~~~~ 230 (236)
T cd03219 227 PDEV 230 (236)
T ss_pred HHHh
Confidence 8765
No 50
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.6e-46 Score=360.89 Aligned_cols=207 Identities=27% Similarity=0.383 Sum_probs=179.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHH
Confidence 789999999941 1246999999999999999999999999999999999999885 8999999987521
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||.||+.+..... .....+..+++.++++.+||.+..++.+ .+|||||||||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 147 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRV 147 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1246999999999999999999999875532 2233344567889999999987777644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++..+||++++|++|++
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999977799999999996 678889999999999974
No 51
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-46 Score=373.70 Aligned_cols=231 Identities=26% Similarity=0.389 Sum_probs=194.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|..+....+.+|+||||+|++||+++|+||||||||||+++|+|+++|. +|+|+++|.++..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECcccccccc
Confidence 7899999999421111236999999999999999999999999999999999999886 9999999987521
Q ss_pred ---CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHH
Q 010936 126 ---SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ---~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++||+|++ .+++ .||.||+.|+.... ..+..+.+.++.++++.+||. +..++ .++.|||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSgGq 149 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELSGGQ 149 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCCHHH
Confidence 135699999986 5565 59999999876432 234555667889999999996 35555 456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++..+||+|++|++|++++.|++
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999987799999999996 678899999999999999999999
Q ss_pred hhHHH---HHHhcCCCCCC
Q 010936 280 SAAFE---FFAQAGFPCPA 295 (497)
Q Consensus 280 ~~~~~---~f~~~g~~~~~ 295 (497)
+++.. .+...|+.+|.
T Consensus 229 ~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHcCHHHHHHcCCCCCh
Confidence 88753 34556666554
No 52
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-45 Score=372.15 Aligned_cols=221 Identities=28% Similarity=0.400 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|.......+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccH
Confidence 48899999998421111257999999999999999999999999999999999999986 9999999987532
Q ss_pred --CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCCHHHH
Q 010936 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 --~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGer 200 (497)
..+.+|||||++. .+..+||+||+.|+.... ..+..+..+++.++++.+||. +..++ +++.||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSgGq~ 150 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSGGQK 150 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCHHHH
Confidence 1357999999973 233469999999875432 244555667789999999996 45565 4567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||++||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++..+||+|++|++|++++.|++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~ 229 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTP 229 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999875 99999999995 678899999999999999999999
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 230 ~~~~ 233 (287)
T PRK13637 230 REVF 233 (287)
T ss_pred HHHH
Confidence 8864
No 53
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.6e-46 Score=378.02 Aligned_cols=205 Identities=28% Similarity=0.428 Sum_probs=182.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----CcCcEEEEcCCCCCCCCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTL 143 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~~~i~yv~Q~~~l~~~l 143 (497)
++.+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+... .++.++|++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 467999999999999999999999999999999999999986 8999999987532 134699999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 010936 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (497)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTs 223 (497)
||+||+.+.+..+ ..+..+..++++++++.+||.+..++.+ +.|||||||||+||+||+++|++|||||||+
T Consensus 82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999876543 2334445567899999999988777755 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|||+.++..+++.|++++++|+|||++||++ +++.++||+|++|++|++++.|+++++..
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999987899999999996 68899999999999999999999988654
No 54
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-46 Score=362.14 Aligned_cols=218 Identities=26% Similarity=0.391 Sum_probs=187.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|.... ..+++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 78999999984110 0127999999999999999999999999999999999999886 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+|++||+.+....+ ..........+.++++.++|.+..++.+ ..|||||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 149 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRV 149 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHH
Confidence 1356999999999999999999999875432 2233444567889999999987776644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||+||+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+.+++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 89999999996 678899999999999999999987664
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7.1e-46 Score=356.90 Aligned_cols=209 Identities=27% Similarity=0.423 Sum_probs=182.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFG-----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEEC-----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccc
Confidence 46899999983 467999999999999999999999999999999999999885 9999999987532 234
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.+..... .....+.+++++++++.+||.+..++.+ ..||||||||++|||+
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~lara 144 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRA 144 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999875432 2234445567888999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999874 89999999996 6788999999999999998875
No 56
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7.7e-46 Score=358.40 Aligned_cols=215 Identities=33% Similarity=0.501 Sum_probs=185.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
|+++|+++.|.. ..+++|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~~---~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKK---GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCC---CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHh
Confidence 468899999831 1267999999999999999999999999999999999999885 9999999987532 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+....+ ..+..+..+++.++++.++|.+..++.+ .+|||||||||+||+
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 146 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAI 146 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999875443 2233344567889999999987777654 479999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ ..+.++||++++|++|++++.|+++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999999976 59999999996 578889999999999999999987653
No 57
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=373.96 Aligned_cols=221 Identities=24% Similarity=0.339 Sum_probs=187.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.|+++|+++.|..+......+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccc
Confidence 48999999999432111236999999999999999999999999999999999999986 899999986531
Q ss_pred -----------------------CCcCcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 010936 125 -----------------------LSFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (497)
Q Consensus 125 -----------------------~~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (497)
...+.+|||+|++ ..+...||+||+.|+.... ..+..+..+++.++++.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCC
Confidence 1134689999985 2333469999999875432 344556667889999999996
Q ss_pred -ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHH
Q 010936 181 -DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (497)
Q Consensus 181 -~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~ 259 (497)
+..++ ++..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +.+.
T Consensus 156 ~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~ 229 (305)
T PRK13651 156 ESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVL 229 (305)
T ss_pred hhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHH
Confidence 56665 4567999999999999999999999999999999999999999999999987799999999995 6788
Q ss_pred hcCCeEEEeeCCeEEEEeCchhHH
Q 010936 260 ELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 260 ~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
++||+|++|++|++++.|+++++.
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999998865
No 58
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-47 Score=353.33 Aligned_cols=219 Identities=26% Similarity=0.445 Sum_probs=197.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.+..+||.++| ++++++++||+++++||++|++|||||||||.+.++.|+.+|+ +|+|.+||.++..
T Consensus 4 ~L~a~~l~K~y-----~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSY-----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhh-----CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHH
Confidence 58899999999 4688999999999999999999999999999999999999997 9999999998642
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.+..+||+||++..|-.|||+||+......+.. .....+.+.+++++|+.|+|.+.++.+- ..||||||+|+.
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~E 149 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVE 149 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHH
Confidence 124589999999999999999999998876532 2223455667889999999999998854 479999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|||||+.+|+.++||||++|+||.+..+|.++++.|+..|..|+++-|+. .|...+|||.+++++|+++++|+++++.+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999999999999999999999996 58999999999999999999999998754
No 59
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=370.80 Aligned_cols=220 Identities=25% Similarity=0.324 Sum_probs=187.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|.......+++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48899999999421111256999999999999999999999999999999999999886 8999999987531
Q ss_pred ----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 010936 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (497)
..+.++||+|++ .+++ .||+||+.|+.... ..+..+..++++++++.+||. +..++. ++.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgG 149 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PFELSGG 149 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHH
Confidence 124699999986 4554 69999999875432 234555556789999999996 455654 4679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++ .++.++||||++|++|++++.|
T Consensus 150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999775 99999999995 6788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 229 ~~~~~~ 234 (290)
T PRK13634 229 TPREIF 234 (290)
T ss_pred CHHHHh
Confidence 988764
No 60
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.1e-45 Score=356.71 Aligned_cols=213 Identities=31% Similarity=0.467 Sum_probs=183.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.|... ....++|+|+||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|++... .+
T Consensus 2 l~~~~v~~~~~~~-~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDV-KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCC-CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHH
Confidence 6889999998421 01126999999999999999999999999999999999999885 9999999987532 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+ ..||||||||++|||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 149 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIAR 149 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHH
Confidence 56999999999999999999998865432 2334455667889999999987777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999977799999999996 6788999999999999998654
No 61
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-45 Score=354.72 Aligned_cols=209 Identities=29% Similarity=0.507 Sum_probs=182.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCcE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~~i 130 (497)
++++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRF-----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEE-----CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhHHHHccE
Confidence 4689999998 2467999999999999999999999999999999999999885 9999999986532 23579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++|++.+++.+||+||+.+....+ .....+..+.+.++++.+||.+..++.+ .+|||||||||+||++|+
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999875443 2233444567889999999987776644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999987789999999996 5788899999999999998754
No 62
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-46 Score=355.87 Aligned_cols=219 Identities=26% Similarity=0.441 Sum_probs=204.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGT 129 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~~ 129 (497)
.+++++|+++| +++.+++|+||.+++|+++|++|||||||||++++|.|++.|+ +|+|.++|.+... ...+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhhh
Confidence 58899999999 6789999999999999999999999999999999999999996 9999999998654 3467
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 209 (497)
|||+|.+..|||.+||.|.|.|.+.++ +++.++.+..++.+|+++++......+| .+||.|++|++.+..++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisav 145 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAV 145 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHH
Confidence 999999999999999999999999987 7888999999999999999988877765 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHH
Q 010936 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (497)
+++|++++||||+|||||.+...+.+.+.+++++|.|||+|+|.. ..+.++||++++|++|+.|.+|+.+++...|
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999999999999999999999999999995 7899999999999999999999999987644
No 63
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-45 Score=361.18 Aligned_cols=218 Identities=30% Similarity=0.423 Sum_probs=184.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++||++.|. +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYP----NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecC----CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHH
Confidence 46889999883 1267999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-----PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
..+.++|++|++.+++.+||+||+.+...... ..........+++.++++.++|.+..++. +.+||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 148 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGG 148 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHH
Confidence 12469999999999999999999987642110 00111123345678899999998766664 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|++++.|
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999999999764 89999999996 5788899999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 228 ~~~~~ 232 (241)
T cd03256 228 PPAEL 232 (241)
T ss_pred CHHHh
Confidence 88765
No 64
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.9e-46 Score=357.46 Aligned_cols=208 Identities=32% Similarity=0.451 Sum_probs=177.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|.... ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHH
Confidence 46899999984210 0157999999999999999999999999999999999999885 8999999987531
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+.++|++|++.+++.+||+||+.+....+ ........+.+.++++.+||.+..++.+ +.||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 148 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQR 148 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHH
Confidence 1246999999999999999999999876543 1223344567889999999987766644 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ .++. +||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999987 589999999996 4565 9999999999974
No 65
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.2e-46 Score=339.66 Aligned_cols=213 Identities=29% Similarity=0.426 Sum_probs=185.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
+.+++++++|. +.-=..+++|..||++||+||||||||||||+|+|+..|. +|+|++||++... ..+
T Consensus 2 l~L~~V~~~y~-------~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYG-------HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeC-------cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccC
Confidence 56678888882 1234678999999999999999999999999999999996 9999999997432 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
-++.++|+.++|.++||.+|+.++..-.+ .. .++.+++++.++..+||..+.++. |.+|||||||||+|||+
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALARc 143 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALARC 143 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHHHH
Confidence 68999999999999999999999854221 12 345567899999999999988875 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+++-+||+||||+|+|||.-+.++..++.+++.+ +.|++++||+| +++..++|+++++++|+|.+.|+.++.+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999999999999999999874 89999999997 6899999999999999999999988754
No 66
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.7e-45 Score=375.47 Aligned_cols=224 Identities=26% Similarity=0.387 Sum_probs=191.9
Q ss_pred eEEEEEeEEEEEEccCC--------cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010936 50 ARLTWKDLTVMVTLSNG--------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
..|+++||++.|..+.+ ....+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|+++|.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCE
Confidence 46999999999953211 1356999999999999999999999999999999999999885 899999998
Q ss_pred ecCC--------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCc
Q 010936 122 KTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNW 190 (497)
Q Consensus 122 ~~~~--------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 190 (497)
++.. .++.++||+|++ .++|.+||.||+.+......+ ..+..+.++++.++++.+||. +..++
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~----- 157 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINR----- 157 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcC-----
Confidence 7531 135799999997 588999999999987543211 234556667788999999994 34444
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
++++|||||||||+||+||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+ ..+.++||+|++|+
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMY 236 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 66789999999999999999999999999999999999999999999999875 99999999995 67888999999999
Q ss_pred CCeEEEEeCchhHH
Q 010936 270 GGKTVYFGETSAAF 283 (497)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (497)
+|++++.|+++++.
T Consensus 237 ~G~ive~g~~~~i~ 250 (331)
T PRK15079 237 LGHAVELGTYDEVY 250 (331)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999988764
No 67
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.5e-45 Score=356.77 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=182.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.| +.+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGY-----GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeec-----CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHH
Confidence 4689999988 2457999999999999999999999999999999999999885 8999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+|++||+.+...... ..+....+.++++.+ ++.+..++. ++.||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 142 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLA 142 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHH
Confidence 13469999999999999999999998754321 122344566778877 576666654 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++.++||++++|++|+++..|+++++
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999987789999999996 678899999999999999999987664
No 68
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.1e-45 Score=359.02 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=182.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC-----CCCCCceeEEEECCEecCC-
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~-----~~~~~~~G~I~~~G~~~~~- 125 (497)
|+++||++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY-----GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhc
Confidence 4689999998 3457999999999999999999999999999999999998 664 8999999987421
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++|++|++.++ .+||+||+.++..... .....+.++++.++++.+||.+..++.+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 134699999999888 7899999998754321 11122245678889999999876655420 36799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ +|||++||++ +++.++||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999877 9999999996 578899999999999999999987
Q ss_pred hh
Q 010936 280 SA 281 (497)
Q Consensus 280 ~~ 281 (497)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
No 69
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.6e-45 Score=380.31 Aligned_cols=204 Identities=23% Similarity=0.335 Sum_probs=183.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------CcCcEEEEcCCCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------SFGTAAYVTQDDN 138 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~ 138 (497)
.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|. +|+|+++|.++.. .++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 467999999999999999999999999999999999999986 9999999997532 1457999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 010936 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218 (497)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllL 218 (497)
+||++||+||+.|..... ..+..+..+++.++++.+||++..++ ++..|||||||||+|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 34455666789999999999877776 4557999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||||++||+.++..+.+.|.++.++ |+|||++||++ .++..+||+|++|++|+++..|+++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999764 89999999995 6889999999999999999999988865
No 70
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-46 Score=355.78 Aligned_cols=221 Identities=28% Similarity=0.400 Sum_probs=197.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..+++++|++.| +.-.+++||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 3 ~lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~ 74 (250)
T COG0411 3 PLLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPH 74 (250)
T ss_pred ceeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHH
Confidence 357899999999 5688999999999999999999999999999999999999996 8999999998532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL--------PD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (497)
.+..++-.||...+|++|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|+..| +
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~ 149 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----N 149 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----c
Confidence 13457889999999999999999999865331 11 11245667788999999999999999877 5
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||+||+||+.|||||+.+|++|+||||.+||.+....++.+.|++++++ |.||+++.||. ..+..+||||++|+.|++
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEV 228 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcC
Confidence 9999999999999999999999999999999999999999999999984 79999999995 789999999999999999
Q ss_pred EEEeCchhHHH
Q 010936 274 VYFGETSAAFE 284 (497)
Q Consensus 274 v~~G~~~~~~~ 284 (497)
++.|+|+++.+
T Consensus 229 IAeG~P~eV~~ 239 (250)
T COG0411 229 IAEGTPEEVRN 239 (250)
T ss_pred cccCCHHHHhc
Confidence 99999998753
No 71
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.5e-45 Score=358.63 Aligned_cols=215 Identities=26% Similarity=0.387 Sum_probs=187.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEEC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHH
Confidence 68999999983 467999999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++|++|++.+++.+||+||+.++..... .....+..+.+.++++.+||.+..++.+ ..|||||||||+
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 146 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVA 146 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHH
Confidence 13469999999999999999999988642111 2234445567889999999987666644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|+.+++
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999987799999999996 678889999999999999999987765
No 72
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.5e-45 Score=364.97 Aligned_cols=217 Identities=25% Similarity=0.418 Sum_probs=188.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.| +.+.+|+||||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 6 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 6 NLVDMRGVSFTR-----GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRS 77 (269)
T ss_pred ceEEEeCeEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChh
Confidence 358999999998 3467999999999999999999999999999999999999885 8999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++.+||.||+.+...... ........+.+.++++.+||.+..++.+ ..|||||||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~q 150 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMAR 150 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHH
Confidence 12469999999999999999999998643211 1233344556788999999987777654 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+++
T Consensus 151 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (269)
T PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQ 229 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999765 89999999995 6788999999999999999999887
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 230 ~~ 231 (269)
T PRK11831 230 AL 231 (269)
T ss_pred HH
Confidence 65
No 73
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.5e-45 Score=360.68 Aligned_cols=216 Identities=30% Similarity=0.409 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFH-----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcccccccc
Confidence 489999999993 457999999999999999999999999999999999999885 8999999986421
Q ss_pred --------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 --------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|++.+++.+||.||+.++..... ........+++.++++.+||.+..++. ++.|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 147 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSG 147 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCCh
Confidence 12468999999999998999999988643211 123334456788899999998766664 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++ .++.++||++++|++|++++.|
T Consensus 148 Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987799999999996 6788999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 227 ~~~~~ 231 (250)
T PRK11264 227 PAKAL 231 (250)
T ss_pred CHHHH
Confidence 88765
No 74
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-45 Score=359.69 Aligned_cols=214 Identities=27% Similarity=0.459 Sum_probs=185.8
Q ss_pred EEEEeEEEEEEccCCcc-cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 52 LTWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
++++|+++.|. . +.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYG-----GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeC-----CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHH
Confidence 46889999983 3 56999999999999999999999999999999999999885 8999999987432
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCCHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD--CADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||+||+.+..... .....+..+.+.++++.+||.+ ..++ .+..|||||||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qrv 144 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQRV 144 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHHH
Confidence 1346899999999999999999999875432 2233444567889999999985 5555 4467999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+++++
T Consensus 145 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 89999999996 578899999999999999999987765
No 75
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.9e-45 Score=382.83 Aligned_cols=219 Identities=31% Similarity=0.453 Sum_probs=191.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++|++...
T Consensus 3 ~L~~~nls~~y-----~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEF-----GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHH
Confidence 58999999999 3578999999999999999999999999999999999999986 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++||+|++.+++.+||+||+.++...+... .......+++++++++.+||.+..++.+ ++|||||||||+
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~ 149 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVL 149 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHH
Confidence 1357999999999989999999999864321100 1112334567899999999988887755 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+++|++|||||||+|||+.++.+++++|++++++|+|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999987789999999995 6889999999999999999999998754
No 76
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-45 Score=368.41 Aligned_cols=221 Identities=24% Similarity=0.386 Sum_probs=187.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
|.++++||++.|..+....+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKD 77 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 358999999999421111246999999999999999999999999999999999999986 8999999987521
Q ss_pred -----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
.++.+|||||++ .+++ .||.||+.|+.... ..+..+..+++.++++.+||. +..++ .+..|||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSg 148 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMSG 148 (286)
T ss_pred chHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCH
Confidence 135699999986 4565 49999999875432 234455567789999999996 55665 4467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++++.
T Consensus 149 Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999976 499999999995 678899999999999999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|+++++.
T Consensus 228 g~~~~~~ 234 (286)
T PRK13646 228 TSPKELF 234 (286)
T ss_pred CCHHHHH
Confidence 9988764
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.4e-45 Score=361.84 Aligned_cols=218 Identities=29% Similarity=0.385 Sum_probs=184.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. .++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYP----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecC----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHH
Confidence 67899999883 1467999999999999999999999999999999999999885 8999999987431
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRL--P---DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
.++.++|++|++.+++.+||+||+.++..... . ......+..+++.++++.+||.+..++. +..||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 149 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGG 149 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHH
Confidence 13469999999999999999999987532100 0 0011223346788899999998766664 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999764 89999999996 5788999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 87764
No 78
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-45 Score=370.63 Aligned_cols=232 Identities=25% Similarity=0.342 Sum_probs=192.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.|..+....+.+|+||||+|++|+++||+|+||||||||+++|+|+++|. +|+|+++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccccc
Confidence 369999999999522111246999999999999999999999999999999999999986 8999999976421
Q ss_pred -----------------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 010936 126 -----------------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADT 185 (497)
Q Consensus 126 -----------------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 185 (497)
.++.++||+|++ .+++. ||+||+.|+.... ..+..+..+++.++++.+||. +..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 135699999987 46664 9999998875322 234445556788999999996 45555
Q ss_pred cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE
Q 010936 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 186 ~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v 265 (497)
.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++
T Consensus 173 -----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri 246 (320)
T PRK13631 173 -----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEV 246 (320)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEE
Confidence 4567999999999999999999999999999999999999999999999987799999999995 5788999999
Q ss_pred EEeeCCeEEEEeCchhHHH---HHHhcCCCCC
Q 010936 266 YLLSGGKTVYFGETSAAFE---FFAQAGFPCP 294 (497)
Q Consensus 266 ~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~ 294 (497)
++|++|++++.|+++++.. .+...++..|
T Consensus 247 ~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9999999999999987642 3344444433
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-45 Score=363.93 Aligned_cols=216 Identities=27% Similarity=0.356 Sum_probs=186.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|+ ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYK----DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeC----CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 589999999983 1356999999999999999999999999999999999999886 8999999987532
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. .++.+||.||+.|+.... .....+.++++.++++.+||.+..++.+ ..|||||||||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~ 148 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVA 148 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHH
Confidence 1356999999963 445679999999875422 2334445567889999999987777644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +++.++||++++|++|++++.|+++++
T Consensus 149 laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999987799999999995 678899999999999999999998653
No 80
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-45 Score=363.20 Aligned_cols=226 Identities=28% Similarity=0.388 Sum_probs=195.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-C-CCCceeEEEECCEecC-----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-S-NAFLSGTILLNGHKTK----- 124 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~-~-~~~~~G~I~~~G~~~~----- 124 (497)
|+++||++.|...++ ...+++||||++++||++||+|+|||||||+.++|+|+++ + ....+|+|.|+|+++.
T Consensus 2 L~v~nL~v~f~~~~g-~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAG-VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCc-cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 689999999975432 4679999999999999999999999999999999999997 4 3446799999998631
Q ss_pred ----CCcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 ----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKM-PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ----~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.+.+.|+||||++ .|.|.+||.+.+.-....+. .. .+++..+++.++|+.+||.+... +.+.||++|||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSG 156 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSG 156 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCC
Confidence 2346799999996 68899999999888766532 22 35566788999999999976421 23459999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||.||.||+.+|+|||.||||++||...+.+|+++|+++.+ .|.++|++|||+ .-+.++||||+||+.|++|+.
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~ 235 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEE 235 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEe
Confidence 999999999999999999999999999999999999999999987 599999999995 689999999999999999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|++++++
T Consensus 236 g~~~~i~ 242 (316)
T COG0444 236 GPVEEIF 242 (316)
T ss_pred CCHHHHh
Confidence 9998865
No 81
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.4e-45 Score=352.43 Aligned_cols=205 Identities=29% Similarity=0.404 Sum_probs=178.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. .++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYP----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeC----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHH
Confidence 78999999983 2357999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+||.||+.+..... .......++++.++++.++|.+..++.+ ..|||||||||
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 146 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRV 146 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHH
Confidence 1346999999999999999999999875432 1233344567889999999987666644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|+
T Consensus 147 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999977799999999996 67888999999999885
No 82
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.6e-45 Score=351.85 Aligned_cols=205 Identities=29% Similarity=0.472 Sum_probs=179.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|+++.| +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTY-----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEE-----CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHh
Confidence 4689999998 2467999999999999999999999999999999999999885 9999999986531 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.+....+ .. ..++++++++.++|.+..++.+ ..|||||||||+||++
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~a 140 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALA 140 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999875432 11 1345788999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999987889999999996 5788899999999999998764
No 83
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-45 Score=359.59 Aligned_cols=212 Identities=26% Similarity=0.380 Sum_probs=184.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
|+++|+++.|. ++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+.......++
T Consensus 2 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYG-----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEeC-----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCCcEE
Confidence 78999999983 367999999999999999999999999999999999999885 8999999987643334689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
|++|++.+++.+||.||+.+..... .....+..+++.++++.+||.+..++. +..|||||||||+||++|+.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~ 145 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAA 145 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhc
Confidence 9999999999899999998865432 223344456788999999998766664 45799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee--CCeEEEEeCch
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 280 (497)
+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ .++..+||++++|+ +|+++..++.+
T Consensus 146 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999865 589999999996 67889999999998 59999887653
No 84
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.1e-44 Score=354.49 Aligned_cols=214 Identities=33% Similarity=0.516 Sum_probs=185.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYG-----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhh
Confidence 67899999983 467999999999999999999999999999999999999886 8999999987532 12
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+....+ ........+.+.++++.+||.+..++.+ ..||||||||++|||
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~lar 145 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIAR 145 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHH
Confidence 46999999999888999999998875432 2233344566888999999987777654 479999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+.+|+++||||||+|||+.++..+.+.|+++++ +|.|||++||++ +++. .||++++|++|++++.|+++++.
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999985 589999999996 4565 59999999999999999877654
No 85
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-46 Score=361.95 Aligned_cols=222 Identities=24% Similarity=0.341 Sum_probs=200.0
Q ss_pred EEEEEeEEEEEEccC-------------------CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC
Q 010936 51 RLTWKDLTVMVTLSN-------------------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~-------------------~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~ 111 (497)
.|+++|+++-+.... .+....++|+||+++.||++.|||-||||||||+++|.+++.|+
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept-- 81 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT-- 81 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC--
Confidence 478888888775320 12234689999999999999999999999999999999999996
Q ss_pred ceeEEEECCEecC---------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 010936 112 LSGTILLNGHKTK---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182 (497)
Q Consensus 112 ~~G~I~~~G~~~~---------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 182 (497)
+|+|+++|.++. .+++++++|||+..|+|+.||.||..|+...+ +.++++.++++.++|+.+||...
T Consensus 82 -~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 82 -RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred -CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 999999998742 23567999999999999999999999998876 67889999999999999999998
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhc
Q 010936 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFEL 261 (497)
Q Consensus 183 ~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~ 261 (497)
.+. +|++|||||||||.|||||+.+|+|||||||+|+|||--+.++.+.|.+|.++ ++|||++|||. +|++++
T Consensus 158 ~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlri 231 (386)
T COG4175 158 ADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRI 231 (386)
T ss_pred hhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhc
Confidence 877 66789999999999999999999999999999999999999999999999775 89999999995 799999
Q ss_pred CCeEEEeeCCeEEEEeCchhHHH
Q 010936 262 FDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 262 ~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.|||.+|++|+++..|+++|++.
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999999864
No 86
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.3e-45 Score=351.56 Aligned_cols=206 Identities=29% Similarity=0.411 Sum_probs=178.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 1 l~~~~l~~~~~----~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYP----NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 46889999983 2257999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+ .+||||||||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 145 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRV 145 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHH
Confidence 1246999999999999999999999875432 1233444567889999999987766644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
+|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++ ..+.++||++++|++|++
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999977799999999996 678889999999999974
No 87
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-45 Score=357.32 Aligned_cols=217 Identities=24% Similarity=0.446 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAYK-----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEeC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 488999999983 467999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++|++|++.+++.+||.||+.+...... .....+.+.+++++++.+|+.+..++. ++.|||||||||+
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 147 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVE 147 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHH
Confidence 13469999999999999999999988643321 122334456788999999998766654 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 148 IARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999999987799999999996 6788999999999999999999887653
No 88
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-44 Score=352.48 Aligned_cols=215 Identities=27% Similarity=0.333 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.++++|+++.|..+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|++....
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHH
Confidence 489999999984210 1156999999999999999999999999999999999999885 99999999875321
Q ss_pred -----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 -----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.+.++|++|++.+++.+||+||+.+..... .....+.++++.++++.+||.+..++. +.+|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~q 152 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGERQ 152 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHH
Confidence 146999999999999999999999875432 223344456788999999998776664 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.. +|++++|++|++++.|+.
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999999999999976 589999999996 45555 689999999999988764
No 89
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-45 Score=356.40 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=185.9
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----- 124 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~----- 124 (497)
|.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+..
T Consensus 1 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 1 MSIQLNGINCFYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTP 72 (242)
T ss_pred CEEEEEeeEEEEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccc
Confidence 3589999999993 467999999999999999999999999999999999999885 899999998641
Q ss_pred ------CCcCcEEEEcCCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
..++.++|++|++.+++.+||.||+.+.. ... .....+....+.++++.+||.+..++.+ ..|||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 144 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLSG 144 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCH
Confidence 01246899999999999999999997532 221 1223344567889999999987777644 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++ .++.++||++++|++|++++.|
T Consensus 145 G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987799999999996 5778899999999999999999
Q ss_pred Cchh
Q 010936 278 ETSA 281 (497)
Q Consensus 278 ~~~~ 281 (497)
++++
T Consensus 224 ~~~~ 227 (242)
T PRK11124 224 DASC 227 (242)
T ss_pred CHHH
Confidence 8765
No 90
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-45 Score=350.47 Aligned_cols=207 Identities=33% Similarity=0.502 Sum_probs=179.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
|+++|+++.|. .+.+|+|+||++++| +++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~-----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYG-----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEEC-----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHH
Confidence 46899999982 357999999999999 99999999999999999999999886 9999999986432 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||.||+.+..... .....+..+.++++++.+||.+..++.+ ..|||||||||+|||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 143 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQ 143 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHH
Confidence 56999999999999999999999875443 1223344567889999999987777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999976 59999999996 5788899999999999998754
No 91
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=364.73 Aligned_cols=220 Identities=26% Similarity=0.368 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|..+....+.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 57899999999421001256999999999999999999999999999999999999986 9999999987521
Q ss_pred ----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 010936 126 ----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (497)
.++.++|++|++ .++ .+||.||+.++.... .....+..+++.++++.+||. +..++.+ +.||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgG 149 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGG 149 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHH
Confidence 124699999997 345 579999998865432 233445566789999999996 5666644 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|+
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHAS 228 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999977799999999995 67889999999999999999999
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
++++.
T Consensus 229 ~~~~~ 233 (287)
T PRK13641 229 PKEIF 233 (287)
T ss_pred HHHHh
Confidence 88764
No 92
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1e-45 Score=407.85 Aligned_cols=254 Identities=28% Similarity=0.364 Sum_probs=205.8
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++..|.+|+.++++.+|+.+.-. .+ ....+..-.++++|+++.|.. .+..+|+|+|++|++
T Consensus 438 ~~~~~~~rL~dil~~~~E~~~~~----~~------------~~~~~~~g~I~~~nvsf~y~~---~~~~vL~~isL~I~~ 498 (709)
T COG2274 438 QAKVALERLGDILDTPPEQEGDK----TL------------IHLPKLQGEIEFENVSFRYGP---DDPPVLEDLSLEIPP 498 (709)
T ss_pred HHHHHHHHHHHHhcCCccccccc----cc------------ccccccCceEEEEEEEEEeCC---CCcchhhceeEEeCC
Confidence 56789999999999888754200 00 011122335999999999953 234799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+|+|+|+++|. +|+|++||.+... .++.+|||+|++.+|.. |++||+.++....
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~ 574 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEA 574 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCC
Confidence 9999999999999999999999999996 9999999998532 25789999999999988 9999999875322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~ 236 (497)
..+.+-.+...+.+++.+. .++..++|.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...|.+.
T Consensus 575 ~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~ 651 (709)
T COG2274 575 TDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651 (709)
T ss_pred CHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHH
Confidence 1011111112222333443 567788999997 7788999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 237 L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|.++.. |+|+|+++|+++ ..+.||+|++|++|+++.+|+.+++..
T Consensus 652 L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 652 LLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHH
Confidence 999855 799999999964 688999999999999999999998765
No 93
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=363.05 Aligned_cols=218 Identities=27% Similarity=0.400 Sum_probs=188.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|... ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 58999999999421 1246999999999999999999999999999999999999886 9999999987532
Q ss_pred CcCcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++|++|++ .+++.+||+||+.|+.... ..+.++..+++.++++.+||.+..++.+ ..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~ 150 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVA 150 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHH
Confidence 135699999997 4677789999999875432 2345555677899999999987777644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++ ..||++++|++|+++..|+++++.
T Consensus 151 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 151 IAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999875 99999999996 456 589999999999999999988765
No 94
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=377.92 Aligned_cols=202 Identities=26% Similarity=0.379 Sum_probs=179.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------CcCcEEEEcCCCCCC
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------SFGTAAYVTQDDNLI 140 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~ 140 (497)
.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|+++|.++.. .++.++|++|++.++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 4899999999999999999999999999999999999986 8999999987532 124699999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 010936 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDE 220 (497)
+.+||+||+.+....+ ..+..+..+++.++++.+||.+..++. +++|||||||||+|||||+.+|++|||||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999986543 233445556788999999998777664 46799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 221 PTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+|||+.++..+.+.|+++.+ .|+|||++||++ +++.++||++++|++|+++..|+++++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999976 589999999995 6888999999999999999999987764
No 95
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-45 Score=363.53 Aligned_cols=214 Identities=23% Similarity=0.364 Sum_probs=185.4
Q ss_pred EEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------
Q 010936 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (497)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------- 125 (497)
.++|+++.| +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 26 ~~~~~~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKT-----GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhc-----CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhh
Confidence 456777777 4567999999999999999999999999999999999999886 8999999987431
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+||+||+.+..... ........+++.++++.+||.+..++.+ .+|||||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv 169 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRV 169 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHH
Confidence 1246999999999999999999999875432 1223344567888999999987777754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+++++
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999764 89999999995 578899999999999999999988765
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 3
No 96
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.3e-44 Score=350.64 Aligned_cols=207 Identities=27% Similarity=0.369 Sum_probs=180.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|+ ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYL----GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEec----CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHH
Confidence 78999999983 2357999999999999999999999999999999999999885 9999999987531
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||+||+.+..... .....+....+.++++.++|.+..++. +..|||||||||
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv 146 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRV 146 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHH
Confidence 1346899999999888899999999875432 223344455678899999998766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++ +++..+||++++|++|+++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999977789999999996 6788899999999999975
No 97
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.8e-44 Score=357.29 Aligned_cols=216 Identities=29% Similarity=0.390 Sum_probs=186.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccc
Confidence 389999999993 467999999999999999999999999999999999999885 8999999986421
Q ss_pred -------------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCcc
Q 010936 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWH 191 (497)
Q Consensus 126 -------------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~ 191 (497)
..+.++|++|++.+++.+||+||+.++..... .....+.+.++.++++.+||.+.. ++ +
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 149 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK-----Y 149 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC-----C
Confidence 12469999999999999999999987542111 123344556788999999997653 44 3
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 467999999999999999999999999999999999999999999999987799999999996 6788899999999999
Q ss_pred eEEEEeCchhH
Q 010936 272 KTVYFGETSAA 282 (497)
Q Consensus 272 ~iv~~G~~~~~ 282 (497)
++++.|+++++
T Consensus 229 ~i~~~~~~~~~ 239 (257)
T PRK10619 229 KIEEEGAPEQL 239 (257)
T ss_pred EEEEeCCHHHh
Confidence 99999988765
No 98
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.7e-44 Score=368.17 Aligned_cols=228 Identities=27% Similarity=0.358 Sum_probs=193.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||++.|..+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++|....+|+|.++|.++..
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3699999999995321 23569999999999999999999999999999999999998742348999999997531
Q ss_pred -----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 -----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
+.+.++||+|++ .++|.+|+.+++........ .....+..+++.++++.+||.+..+. + +.++++||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG 165 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGG 165 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHH
Confidence 124799999998 68899999999987654321 23455556778899999999753322 2 2477899999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+||+||+.+|++||+||||+|||+.++..+++.|++++++ |.|+|++|||+ ..+.++||+|++|++|++++.|
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 99999999996 5788899999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 245 ~~~~i~ 250 (330)
T PRK09473 245 NARDVF 250 (330)
T ss_pred CHHHHH
Confidence 998875
No 99
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.1e-44 Score=354.76 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=184.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~---- 125 (497)
++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEEC-----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 68999999983 356999999999999999999999999999999999999862 1127999999987531
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgG 198 (497)
.++.++|++|++.+++ +||+||+.+....+. ..+..+..+.+.++++.+||. +..++ .+..||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG 148 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGLSGG 148 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccCCHH
Confidence 1356999999999988 899999998754321 123344556788999999997 44454 45679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++ +|||++||++ .++.++||++++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999999774 8999999996 57889999999999999999998
Q ss_pred chhH
Q 010936 279 TSAA 282 (497)
Q Consensus 279 ~~~~ 282 (497)
++++
T Consensus 227 ~~~~ 230 (247)
T TIGR00972 227 TEQI 230 (247)
T ss_pred HHHH
Confidence 8765
No 100
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=354.43 Aligned_cols=214 Identities=23% Similarity=0.360 Sum_probs=184.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEeeC-----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHH
Confidence 589999999983 467999999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-GLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+||.||+.++.... ........+.++++.+ ++.+..++. +..|||||||||
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQML 146 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHH
Confidence 1346999999999999999999998864321 1122334566777777 476555553 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999999999999999999987799999999996 6789999999999999999999987763
No 101
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-44 Score=368.11 Aligned_cols=222 Identities=24% Similarity=0.307 Sum_probs=190.7
Q ss_pred EEEEEeEEEEEEccCC-----cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC
Q 010936 51 RLTWKDLTVMVTLSNG-----ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~ 125 (497)
.|+++||++.|..+.+ ....+|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCc
Confidence 5899999999953211 1257999999999999999999999999999999999999885 8999999987521
Q ss_pred --------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCC
Q 010936 126 --------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRG 194 (497)
Q Consensus 126 --------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 194 (497)
.++.++||+|++ .+.|.+||.+++........ .....+.++++.++++.+||.+ ..++ ++++
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~ 154 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPHM 154 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCcc
Confidence 135699999997 58899999999987654321 2344556678899999999963 4454 5678
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|||||||||+|||||+.+|++||+||||++||+.++.+++++|+++.++ |.|+|++|||+ ..+.++||+|++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874 99999999995 678889999999999999
Q ss_pred EEEeCchhHH
Q 010936 274 VYFGETSAAF 283 (497)
Q Consensus 274 v~~G~~~~~~ 283 (497)
++.|+.+++.
T Consensus 234 ve~g~~~~~~ 243 (327)
T PRK11308 234 VEKGTKEQIF 243 (327)
T ss_pred EEECCHHHHh
Confidence 9999988765
No 102
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=358.73 Aligned_cols=207 Identities=27% Similarity=0.359 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.| +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+.....+.+
T Consensus 12 ~l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRY-----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEAREDT 83 (257)
T ss_pred cEEEEEEEEEE-----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhCce
Confidence 48999999999 3467999999999999999999999999999999999999885 899999998754334679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++|++.+++.+||+||+.+... . ....++.++++.+||.+..++. +..|||||||||+|||+|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALARALI 149 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHh
Confidence 999999999998999999987531 0 1235678899999998776664 4579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++||++ .++.++||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999865 589999999996 5788999999999999999887653
No 103
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.9e-44 Score=353.83 Aligned_cols=217 Identities=24% Similarity=0.392 Sum_probs=185.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|. .+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 2 ILYLEGLSVSFD-----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred eEEEEeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHH
Confidence 378999999983 357999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP--D---KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
..+.++|++|++.+++.+||+||+.+....... . .........+++++++.+|+.+..++.+ +.|||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge 148 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQ 148 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHH
Confidence 124599999999999999999999986432100 0 0112334567889999999987777654 5799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
+|||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||++ +++.++||++++|++|++++.|++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCH
Confidence 9999999999999999999999999999999999999999976 68999999995 678899999999999999999987
Q ss_pred hhH
Q 010936 280 SAA 282 (497)
Q Consensus 280 ~~~ 282 (497)
+++
T Consensus 227 ~~~ 229 (242)
T TIGR03411 227 DQV 229 (242)
T ss_pred HHH
Confidence 764
No 104
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2e-44 Score=355.93 Aligned_cols=215 Identities=30% Similarity=0.380 Sum_probs=185.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFG-----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeC-----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 46899999993 467999999999999999999999999999999999999885 9999999986521
Q ss_pred ------------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 010936 126 ------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (497)
Q Consensus 126 ------------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (497)
..+.++|++|++.+++.+||.||+.++.... ...........+.++++.+|+.+..++. +.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~ 145 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM-----PA 145 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----hh
Confidence 1346999999999999999999998864221 1223344456788999999998766654 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
.||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++..+||++++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGR 224 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999999875 89999999996 67889999999999999
Q ss_pred EEEEeCchhH
Q 010936 273 TVYFGETSAA 282 (497)
Q Consensus 273 iv~~G~~~~~ 282 (497)
+++.|+.+++
T Consensus 225 i~~~g~~~~~ 234 (252)
T TIGR03005 225 IVEQGKPDEI 234 (252)
T ss_pred EEEeCCHHHH
Confidence 9999987765
No 105
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.5e-45 Score=348.95 Aligned_cols=201 Identities=30% Similarity=0.417 Sum_probs=172.8
Q ss_pred EEEeEEEEEEccCCcc-cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCc
Q 010936 53 TWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (497)
Q Consensus 53 ~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (497)
+++|+++.|. . +.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.
T Consensus 1 ~~~~l~~~~~-----~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 1 RIENISFSYK-----KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKS 72 (205)
T ss_pred CcccEEEEeC-----CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcc
Confidence 3678999883 3 67999999999999999999999999999999999999886 9999999987531 2356
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 130 AAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 130 i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
++|++|++. .+..+||+||+.+..... . . ...++.++++.+||.+..++.+ .+||||||||++||||
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 140 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAA 140 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHH
Confidence 999999974 334579999998865322 1 1 1246788999999988777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|+++
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999987799999999996 5788899999999999874
No 106
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=356.26 Aligned_cols=218 Identities=23% Similarity=0.330 Sum_probs=186.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.| +++++|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRF-----GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEE-----CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999885 9999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCccc
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP----------DKM--PWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (497)
....++|++|++.+++.+||+||+.++...... ... ...+....+.++++.+||.+..++.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 123589999999999999999999986431100 000 11123356788899999987776654
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQG 230 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999875 89999999995 6788999999999999
Q ss_pred eEEEEeCchhH
Q 010936 272 KTVYFGETSAA 282 (497)
Q Consensus 272 ~iv~~G~~~~~ 282 (497)
++++.|+++++
T Consensus 231 ~i~~~~~~~~~ 241 (255)
T PRK11300 231 TPLANGTPEEI 241 (255)
T ss_pred eEEecCCHHHH
Confidence 99999988765
No 107
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-44 Score=361.06 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYS----DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchH
Confidence 589999999993 2356999999999999999999999999999999999999885 9999999987521
Q ss_pred --CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 --~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.++.++|++|++. .+...||+||+.+..... ..+..+..++++++++.+||.+..++.+ +.||||||||
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qr 149 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 149 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHH
Confidence 1256999999973 234579999999865432 2344455567899999999987777654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|++++.|++++
T Consensus 150 l~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 228 (283)
T PRK13636 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 67888999999999999999999987
Q ss_pred HHH
Q 010936 282 AFE 284 (497)
Q Consensus 282 ~~~ 284 (497)
+..
T Consensus 229 ~~~ 231 (283)
T PRK13636 229 VFA 231 (283)
T ss_pred Hhc
Confidence 653
No 108
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-45 Score=343.94 Aligned_cols=216 Identities=27% Similarity=0.417 Sum_probs=186.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++||+..| +..++|++|||++++||+++|+|+|||||||||++|+|+.++. +|+|.++|+++..
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHH
Confidence 58999999999 5688999999999999999999999999999999999999985 8999999998642
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.+..++||||...+||.|||+|||..++..+.. +.......+++.+.|- |.+..+++-| .|||||+|.+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQML 145 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQML 145 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHH
Confidence 135699999999999999999999998655321 1111122666666663 5666666655 6999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||+++.++. ..+.+++||.++|.+|++++.|+.+++
T Consensus 146 AiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~eL 224 (237)
T COG0410 146 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAEL 224 (237)
T ss_pred HHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 88999999885 689999999999999999999999887
Q ss_pred HH
Q 010936 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
..
T Consensus 225 ~~ 226 (237)
T COG0410 225 LA 226 (237)
T ss_pred hc
Confidence 53
No 109
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-45 Score=381.48 Aligned_cols=248 Identities=30% Similarity=0.377 Sum_probs=205.4
Q ss_pred CchhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 010936 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (497)
|++.||++.+..++++++.... + .+.....+.+++.++.+|+++.|+. ++++++|+|++++
T Consensus 285 ~~g~aa~d~i~~~l~~~~~~~~-------------~--~~~~~~~~~~~~ei~~~~l~~~y~~----g~~~l~~l~~t~~ 345 (559)
T COG4988 285 AAGEAAADKLFTLLESPVATPG-------------S--GEKAEVANEPPIEISLENLSFRYPD----GKPALSDLNLTIK 345 (559)
T ss_pred hhhhhHHHHHHHHhcCCCCCCC-------------C--ccccccccCCCceeeecceEEecCC----CCcccCCceeEec
Confidence 5678999999999986655321 0 0001122345667888899999963 3489999999999
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
+|+.++|+|+||||||||+++|+|+.+|+ +|+|.+||.+... .+++++||+|++.+|+. |++||+.++..-
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~ 421 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD 421 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc
Confidence 99999999999999999999999999986 9999999987532 24789999999999998 999999987431
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCC------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 156 RLPDKMPWSEKRTLVERTIIEMGL------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.++ +.+.++++..|| ++..|+.+|+ ..++|||||+|||++||||+++++++|+||||++||.++
T Consensus 422 -----~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 422 -----ASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred -----CCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhH
Confidence 222 335556666555 3467889987 778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..|.+.|.+++++ +|||++||++ ....-+|+|++|++|++++.|..+++.+
T Consensus 492 E~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 492 EQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999875 9999999996 3567799999999999999999988743
No 110
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-44 Score=359.43 Aligned_cols=221 Identities=24% Similarity=0.342 Sum_probs=185.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
|.|+++|+++.|..+....+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKN 77 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccc
Confidence 358899999998421101146999999999999999999999999999999999999885 8999999987531
Q ss_pred -----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCH
Q 010936 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|++ .+++ .||+||+.+..... .....+..+.++++++.+||.+ ..++. +..|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSg 148 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----PFELSG 148 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCH
Confidence 124699999996 4555 69999999875432 2233444566888999999963 45554 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 149 GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987789999999996 6788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 228 ~~~~~~ 233 (280)
T PRK13649 228 KPKDIF 233 (280)
T ss_pred CHHHHh
Confidence 988764
No 111
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.4e-45 Score=400.42 Aligned_cols=245 Identities=25% Similarity=0.376 Sum_probs=196.0
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|++|+.++++.++.... .+ . . .........++++|+++.+. +++++|+|+||++++
T Consensus 316 ~~~~~~~ri~~~l~~~~~~~~--~~-------~----~---~~~~~~~~~i~~~~vsf~~~----~~~~vL~~i~l~i~~ 375 (588)
T PRK11174 316 QAVGAAESLVTFLETPLAHPQ--QG-------E----K---ELASNDPVTIEAEDLEILSP----DGKTLAGPLNFTLPA 375 (588)
T ss_pred HHHHHHHHHHHHHcCCCcccC--CC-------c----c---ccCCCCCceEEEEeeEEecc----CCCeeeeeeEEEEcC
Confidence 578899999999976543110 00 0 0 00001122599999997663 246799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.+||+||||||||||+++|+|++ |. +|+|.+||.+... .++.++||+|++.+|+. |++|||.++..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-- 448 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-- 448 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC--
Confidence 9999999999999999999999999 75 8999999998542 24679999999999987 99999998732
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.++ +.++++..+ |++..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 449 ---~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge-~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 449 ---DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred ---CCCHHH----HHHHHHHhCHHHHHHhccccccccccc-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 123322 333333333 45577999987 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++. +++|+|++||+++ ..+.||+|++|++|++++.|+.+++..
T Consensus 521 e~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 521 EQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999885 4799999999973 567799999999999999999887753
No 112
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.3e-44 Score=349.83 Aligned_cols=220 Identities=46% Similarity=0.707 Sum_probs=182.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcCc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (497)
+.|+|+++.++..+ ..+++|+|+||++++||+++|+||||||||||+++|+|+++++...+|+|.++|.+... .++.
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred ceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 67999999995321 13689999999999999999999999999999999999998211138999999987532 2457
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER-TIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
++|++|++.+++.+||+||+.++.....+..........++++ .++.+++.+..++.+ +.|||||+|||+|||+
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lara 157 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQ 157 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHH
Confidence 9999999999999999999998765432211122222334555 888899877666644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|++||++..++.++||++++|++|++++.|
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998778999999999645789999999999999998765
No 113
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.1e-44 Score=348.33 Aligned_cols=206 Identities=31% Similarity=0.431 Sum_probs=178.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. .+.+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEEC-----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHH
Confidence 46889999983 367999999999999999999999999999999999999885 8999999987521
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+|++||+.++..... .....+..+++.++++.+|+.+..++.+ .+||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ 145 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVA 145 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHH
Confidence 13569999999999999999999998643211 2233444567888999999987766644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999999996 678899999999999874
No 114
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.5e-44 Score=352.77 Aligned_cols=218 Identities=28% Similarity=0.381 Sum_probs=182.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECCEecCC----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~---- 125 (497)
|+++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+. +|. +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVE-----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEEC-----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 46899999993 467999999999999999999999999999999999995 454 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC---C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (497)
....++|++|++.+++.+|+.|++.+....... . .....+..+++.++++.+||.+ ..++.++ .+||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 148 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGG 148 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHH
Confidence 123489999999999999999999886543210 0 0122333467888999999973 4555432 249999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~G 277 (497)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +.+..+ ||++++|++|++++.|
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999987789999999996 577777 8999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 228 ~~~~~ 232 (243)
T TIGR01978 228 DVELA 232 (243)
T ss_pred CHHHh
Confidence 88754
No 115
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-44 Score=358.10 Aligned_cols=225 Identities=30% Similarity=0.386 Sum_probs=189.0
Q ss_pred cCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 010936 44 FSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (497)
Q Consensus 44 ~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 123 (497)
+++.....|+++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+.
T Consensus 4 ~~~~~~~~l~i~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~ 75 (265)
T PRK10575 4 YTNHSDTTFALRNVSFRVP-----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPL 75 (265)
T ss_pred ccCCCCceEEEeeEEEEEC-----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEeh
Confidence 3334445699999999993 467999999999999999999999999999999999999885 89999999874
Q ss_pred CC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 124 KL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 124 ~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.. ..+.++|++|++.+++.+||.||+.+....... .........+++.++++.++|.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 21 134699999998888899999999876321100 00111233456888999999987667654 47999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|+++..
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999875 89999999996 678899999999999999999
Q ss_pred eCchhH
Q 010936 277 GETSAA 282 (497)
Q Consensus 277 G~~~~~ 282 (497)
|+.+++
T Consensus 230 ~~~~~~ 235 (265)
T PRK10575 230 GTPAEL 235 (265)
T ss_pred cCHHHh
Confidence 987765
No 116
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.6e-44 Score=347.99 Aligned_cols=209 Identities=26% Similarity=0.383 Sum_probs=177.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|..+. ..+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHH
Confidence 67899999984211 1256999999999999999999999999999999999999885 9999999987531
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.+ ..||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 149 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQR 149 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHH
Confidence 0146999999999999999999999865432 1223334456788999999987766644 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++ ..+|++++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-hhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999864 89999999996 455 458999999999875
No 117
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-44 Score=366.76 Aligned_cols=227 Identities=23% Similarity=0.284 Sum_probs=189.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-CceeEEEECCEecCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~---- 125 (497)
.|+++||++.|..+. +...+|+||||+|++||++||+|+||||||||+++|+|++++.. ..+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999995321 12569999999999999999999999999999999999987421 258999999997531
Q ss_pred -----CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 -----SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 -----~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
+.+.++||+|++ .++|.+||.+++........ .....+.++++.++++.+||.+..+. -+.++++||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgG 157 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGG 157 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHH
Confidence 123699999998 57899999998877654321 23445566788999999999752111 12367789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+||+||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||+ ..+.++||+|++|++|++++.|
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999987 499999999996 5788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 237 ~~~~~~ 242 (326)
T PRK11022 237 KAHDIF 242 (326)
T ss_pred CHHHHh
Confidence 988765
No 118
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-44 Score=355.65 Aligned_cols=216 Identities=32% Similarity=0.443 Sum_probs=185.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLG-----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHH
Confidence 488999999993 467999999999999999999999999999999999999885 8999999986431
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.++|++|++.+++.+||+||+.+..... ........+.+.++++.+||.+..++.+ ..|||||||||+|
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~l 145 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQL 145 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHH
Confidence 1246899999998888899999999864321 1122233456788999999987777654 5799999999999
Q ss_pred HHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 206 ALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 206 A~aL~------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|+||+ .+|++|||||||+|||+.++..+.+.|++++ ++|.|||++||++ .++..+||++++|++|++++.|+
T Consensus 146 a~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 224 (258)
T PRK13548 146 ARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGT 224 (258)
T ss_pred HHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCC
Confidence 99999 5999999999999999999999999999998 5689999999996 67888999999999999999998
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
++++.
T Consensus 225 ~~~~~ 229 (258)
T PRK13548 225 PAEVL 229 (258)
T ss_pred HHHHh
Confidence 77653
No 119
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-44 Score=356.46 Aligned_cols=218 Identities=28% Similarity=0.405 Sum_probs=186.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.| +++.+|+|+||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGY-----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEE-----CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+||.||+.++...... ...........+.++++.+||.+..++. +..|||||+|||+
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 148 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQRAF 148 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHHHH
Confidence 134699999999888889999999886321100 0111123345678899999998777764 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..|+.+++
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999987789999999996 678899999999999999999987765
No 120
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.4e-44 Score=347.46 Aligned_cols=204 Identities=31% Similarity=0.454 Sum_probs=173.4
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcC
Q 010936 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFG 128 (497)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~ 128 (497)
++|+++.|.. ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 2 ~~~l~~~~~~---~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPD---GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCC---CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHh
Confidence 6788988831 1257999999999999999999999999999999999999885 8999999987532 135
Q ss_pred cEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 129 TAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 129 ~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
.++|++|++. .++.+||+||+.+..... ..........+.++++.+||.+..++.+ ..|||||||||+|||
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~lar 147 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAG 147 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHH
Confidence 6899999975 366789999998865432 1223344556888999999987666644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999987799999999996 67888999999999885
No 121
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=359.91 Aligned_cols=215 Identities=30% Similarity=0.417 Sum_probs=184.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|. ++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRYQ-----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEcC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHH
Confidence 78999999983 467999999999999999999999999999999999999886 9999999987521
Q ss_pred -CcCcEEEEcCCCCC-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNL-IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l-~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+ +...|+.||+.+..... .....+..+.+.++++.+||.+..++.+ ..||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 145 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRV 145 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHH
Confidence 12469999999753 34458999998865432 2233444566888999999987777644 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987789999999996 6788999999999999999999987754
No 122
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-44 Score=355.27 Aligned_cols=217 Identities=22% Similarity=0.358 Sum_probs=183.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~-- 125 (497)
..|+++|+++.| +.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 11 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWY-----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEe-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 359999999988 24679999999999999999999999999999999999987510 148999999987421
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCC
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGIS 196 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LS 196 (497)
..+.++|++|++.+++ +||+||+.+..... ..+..+..+.+.++++.+++. +..++ .+..||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS 156 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKS-----PALSLS 156 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcC-----ChhhCC
Confidence 1346999999998888 89999999875432 223344455688899999984 23344 446799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |.|||++||++ .++.++||++++|++|++++.
T Consensus 157 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 79999999995 678899999999999999999
Q ss_pred eCchhH
Q 010936 277 GETSAA 282 (497)
Q Consensus 277 G~~~~~ 282 (497)
|+++++
T Consensus 235 ~~~~~~ 240 (258)
T PRK14268 235 GQTRQI 240 (258)
T ss_pred CCHHHH
Confidence 988765
No 123
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=8.1e-45 Score=349.69 Aligned_cols=209 Identities=33% Similarity=0.461 Sum_probs=174.3
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEE
Q 010936 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYV 133 (497)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv 133 (497)
++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+....++.++|+
T Consensus 2 ~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYG-----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEEC-----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEEe
Confidence 578888882 357999999999999999999999999999999999999886 899999998653334579999
Q ss_pred cCCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 134 TQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 134 ~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++.++ +.+||+||+.+....... .........++++++++.++|.+..++.+ ..|||||||||+||+||+
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALV 148 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 9998763 347999999886432110 00112234456888999999987666644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999987889999999996 6788999999999876 55544
No 124
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.3e-44 Score=356.45 Aligned_cols=221 Identities=29% Similarity=0.423 Sum_probs=187.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|+...+|+|+++|.+...
T Consensus 4 ~l~~~nl~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTF-----NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEe-----CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 58999999998 34679999999999999999999999999999999999998753346999999987421
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (497)
..+.++|++|++.+++.+||.||+.+......+. .....+.+.++.++++.+||.+..++.+ ..|
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 153 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STL 153 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----ccc
Confidence 1246899999999999999999998764211000 0112234467889999999987777654 479
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ .++..+||++++|++|+++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVF 232 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 489999999996 5788999999999999999
Q ss_pred EEeCchhH
Q 010936 275 YFGETSAA 282 (497)
Q Consensus 275 ~~G~~~~~ 282 (497)
+.|+++++
T Consensus 233 ~~g~~~~~ 240 (262)
T PRK09984 233 YDGSSQQF 240 (262)
T ss_pred EeCCHHHh
Confidence 99987653
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-44 Score=359.82 Aligned_cols=215 Identities=27% Similarity=0.374 Sum_probs=185.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. +.+.+|+||||+|++||+++|+|||||||||||++|+|+++|. +|+|+++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYP----DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcC----CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHH
Confidence 78999999983 2356999999999999999999999999999999999999885 8999999987531
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. .+..+||.||+.+..... ..+..+..+.+.++++.+||.+..++.+ ..|||||||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 146 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVA 146 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHH
Confidence 1246999999975 356689999998875432 2344455567889999999988777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ .++ ..||++++|++|++++.|+++++.
T Consensus 147 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 147 LAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL-EEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999987799999999996 566 579999999999999999988764
No 126
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-44 Score=352.80 Aligned_cols=224 Identities=28% Similarity=0.356 Sum_probs=185.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecC--C-
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK--L- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~--~- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ ...+|+|+++|+++. .
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEeC-----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 589999999993 357999999999999999999999999999999999998762 124899999998753 1
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++.+||.||+.++...+. ...+..+....+.++++.+|+........ +..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHH
Confidence 12469999999999999999999998754321 01123344456788999999853211111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++..+||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 69999999996 57889999999999999999999876
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 53
No 127
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-44 Score=351.30 Aligned_cols=224 Identities=28% Similarity=0.374 Sum_probs=185.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEEC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 488999999983 457999999999999999999999999999999999998741 1248999999987531
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++|++|++.+++.+||.||+.++...... .....+..+.+.++++.+||.+...... +..+.+|||||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv 155 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccCCHHHHHHH
Confidence 135699999999888899999999987543210 1123344567889999999864211111 224568999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|+|++||++ .++.++||++++|++|++++.|+++++.
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999865 79999999996 5788899999999999999999987653
No 128
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.4e-44 Score=347.61 Aligned_cols=214 Identities=30% Similarity=0.413 Sum_probs=176.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|.... ....+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.++..
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhH
Confidence 68899999984210 0126999999999999999999999999999999999999885 8999999987531
Q ss_pred --CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCcccCCCCHHH
Q 010936 126 --SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTL-VERTIIEMGLQ-DCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 --~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++|++|++ .+++.+||+||+.+....... ......... +.++++.+++. +..++. +..|||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~ 150 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQ 150 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHH
Confidence 134699999998 467789999999886543211 111122222 35788999995 455554 45799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++..+||++++|++|+++..|
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999999875 89999999996 5788899999999999998654
No 129
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.6e-44 Score=350.18 Aligned_cols=211 Identities=27% Similarity=0.406 Sum_probs=180.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++||++.|. .+++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYG-----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeC-----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHH
Confidence 46899999983 467999999999999999999999999999999999999885 8999999987531
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+|+.||+.++.... ... ..+.++++++.++ +.+..++. +..||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~ 141 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLA 141 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHH
Confidence 1246999999999999999999999875432 111 1233566777776 55555554 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||++|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ .++..+||++++|++|++++.|+.+++
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999999999999999874 89999999996 678889999999999999999988765
No 130
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-44 Score=351.75 Aligned_cols=221 Identities=26% Similarity=0.339 Sum_probs=182.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 6 KMEARGLSFFYG-----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred EEEEeeeEEEEC-----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 489999999993 3579999999999999999999999999999999999864 211248999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++ .||+||+.++...+. ........+++.++++.+|+.+...+.. +..+..|||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 156 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQ 156 (253)
T ss_pred CHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHH
Confidence 1356999999998888 499999998754321 1122334566888899999854222211 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++ .++.++||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 79999999996 67889999999999999999998776
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 235 ~ 235 (253)
T PRK14242 235 I 235 (253)
T ss_pred H
Confidence 5
No 131
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-43 Score=356.30 Aligned_cols=217 Identities=26% Similarity=0.352 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|.. ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 4899999999931 2356999999999999999999999999999999999999986 9999999987532
Q ss_pred CcCcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++ .+++.+||.||+.++.... ..+..+..+++.++++.+||.+..++.+ ..|||||||||+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~ 150 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVA 150 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHH
Confidence 135699999997 3666789999999875432 2334455667899999999988777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++ .++. .||++++|++|++++.|+++++.
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999996 4565 69999999999999999988765
No 132
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-44 Score=357.39 Aligned_cols=217 Identities=30% Similarity=0.427 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|. +.+.+|+||||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYS----GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeC----CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 488999999993 2346999999999999999999999999999999999999886 9999999987532
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. .+...||.||+.+..... ........++++++++.+||.+..++.+ +.||||||||++
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~ 147 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVA 147 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHH
Confidence 1246899999974 334579999998765432 2334445567889999999987777754 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++.|+++++.
T Consensus 148 laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 148 IAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 89999999996 6788999999999999999999998875
No 133
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=354.94 Aligned_cols=216 Identities=31% Similarity=0.468 Sum_probs=185.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.|. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYP----DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeC----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHH
Confidence 78999999983 2356999999999999999999999999999999999999885 8999999987531
Q ss_pred -CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++. .+..+||.||+.+..... .....+..+++.++++.+||.+..++.+ .+|||||+||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv 146 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRV 146 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHH
Confidence 1356999999963 333469999998764321 2234445567889999999988777754 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|+++++.
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987799999999995 6788899999999999999999988864
No 134
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-44 Score=352.10 Aligned_cols=218 Identities=24% Similarity=0.332 Sum_probs=183.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. ..+|+|+++|+++..
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFYT-----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEeC-----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 699999999993 3579999999999999999999999999999999999988621 138999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCCCCH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|++.+++ +||+||+.++..... ........+.+.++++.+++. +..++ .++.|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSg 153 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSG 153 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCH
Confidence 1356999999988885 899999998754321 112333456688889998874 33444 4568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||++ .++.++||++++|++|+++..|
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 79999999996 5788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 232 ~~~~~~ 237 (254)
T PRK14273 232 STDELF 237 (254)
T ss_pred CHHHHH
Confidence 987753
No 135
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=7.3e-44 Score=345.57 Aligned_cols=208 Identities=29% Similarity=0.451 Sum_probs=182.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-cCcE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTA 130 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-~~~i 130 (497)
++++|+++.+. .+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+.... .+.+
T Consensus 1 l~l~~v~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFG-----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccccE
Confidence 46899999883 467999999999999999999999999999999999999885 99999999875321 2469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++|++.+++.+|++||+.+..... ... ...+.++++.+||.+..++.+ ..|||||+||++|||||+
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALL 140 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHh
Confidence 99999999999899999998875432 111 235778899999987777644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|++++.|++.
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999999987789999999996 5788999999999999999998865
No 136
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.4e-44 Score=354.63 Aligned_cols=222 Identities=26% Similarity=0.335 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEEccC----CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-
Q 010936 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~- 125 (497)
.|+++||++.|.... .+.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccc
Confidence 478999999994210 01367999999999999999999999999999999999999885 9999999987531
Q ss_pred -------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 010936 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 195 (497)
..+.++|++|++ .+++.+||+||+.+...... .........++.++++.+||. +..++. +.+|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PRQL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhC
Confidence 124699999996 46778999999987643211 122334456788999999996 555654 4579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ ..+..+||++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999875 89999999996 6788899999999999999
Q ss_pred EEeCchhHH
Q 010936 275 YFGETSAAF 283 (497)
Q Consensus 275 ~~G~~~~~~ 283 (497)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (265)
T TIGR02769 231 EECDVAQLL 239 (265)
T ss_pred EECCHHHHc
Confidence 999987753
No 137
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.5e-44 Score=370.07 Aligned_cols=205 Identities=27% Similarity=0.387 Sum_probs=181.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe----cCC---------CcCcEEEE
Q 010936 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----TKL---------SFGTAAYV 133 (497)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~----~~~---------~~~~i~yv 133 (497)
+...+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|+++|++ ... +.+.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3467899999999999999999999999999999999999986 8999999962 210 12469999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 010936 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (497)
Q Consensus 134 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p 213 (497)
+|++.++|.+||+||+.++.... ..++.+.+.++.++++.+||.+..++.+ .+|||||||||+|||||+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999986543 2345556678899999999988777754 579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 214 ~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+||||||||+|||+.++..+.+.|.++.++ |+|||++||++ +++.++||++++|++|+++..|+++++.
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999875 99999999995 6889999999999999999999998774
No 138
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.1e-43 Score=345.23 Aligned_cols=211 Identities=30% Similarity=0.363 Sum_probs=179.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++|+++.|..+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHH
Confidence 589999999984210 0135999999999999999999999999999999999999886 89999999875321
Q ss_pred -----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 -----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.+.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.++|.+..++.+ ..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~q 153 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQ 153 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHH
Confidence 246999999999999999999998865432 1233444567889999999987766644 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
|++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ ..+ ..||++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999764 89999999996 455 5699999999999875
No 139
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=7.3e-44 Score=352.81 Aligned_cols=217 Identities=32% Similarity=0.446 Sum_probs=185.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~~-----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSA-----GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHH
Confidence 6789999998 3467999999999999999999999999999999999999885 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.+.++|++|++.+++.+||.||+.++...... ......+..+++.++++.+++.+..++.+ ..|||||||||+|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 148 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHV 148 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHH
Confidence 24689999998888889999999885321000 01112233456888999999987777654 5799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++ +++.++||++++|++|++++.|+.+++
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999999999999987789999999996 578899999999999999999987765
No 140
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.2e-44 Score=394.62 Aligned_cols=246 Identities=30% Similarity=0.438 Sum_probs=202.4
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|++|+.++++.+|...... .+ .......|+++|+++.|+ +++++|+|+||++++
T Consensus 297 ~~~~a~~ri~~~l~~~~~~~~~~----~~--------------~~~~~~~I~f~~vsf~y~----~~~~vl~~is~~i~~ 354 (567)
T COG1132 297 RASAAAERLFELLDEEPEVEDPP----DP--------------LKDTIGSIEFENVSFSYP----GKKPVLKDISFSIEP 354 (567)
T ss_pred HHHHHHHHHHHHHcCCccccCCC----CC--------------CCCCCCeEEEEEEEEEcC----CCCccccCceEEEcC
Confidence 47889999999999877632200 00 111223499999999994 257899999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+||||||||||+++|+|+++|. +|+|.+||.+++. .++.++||+|++.+|.. ||+||+.++..-
T Consensus 355 Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-TI~~NI~~g~~~- 429 (567)
T COG1132 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPD- 429 (567)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeecc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999985 9999999998642 24679999999999995 999999998432
Q ss_pred CCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 157 LPDKMPWSEKRTL-----VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 157 ~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
.+.++..+. +++.+.. +++..||.+|+ .+..||||||||++||||++++|++|+||||||+||+.+..
T Consensus 430 ----at~eei~~a~k~a~~~d~I~~--lp~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 430 ----ATDEEIEEALKLANAHEFIAN--LPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred ----CCHHHHHHHHHHhChHHHHHh--CcccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 223332222 3334443 46678999995 67789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.+.+.++++. +|+|+|+++|++ +.+.. ||+|++|++|++++.|+.+++..
T Consensus 503 ~I~~~l~~l~-~~rT~iiIaHRl-sti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 503 LIQDALKKLL-KGRTTLIIAHRL-STIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHHHHHh-cCCEEEEEeccH-hHHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9999999887 568999999997 44554 99999999999999999998764
No 141
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-44 Score=342.87 Aligned_cols=207 Identities=29% Similarity=0.417 Sum_probs=176.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
++++|+++.|. .+. .|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYG-----EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeC-----CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHc
Confidence 46899999883 232 3999999999999999999999999999999999885 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.+...... .. ....++++.++++.+||.+..++.+ .+||||||||++||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~a 142 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARV 142 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 69999999999999999999987643211 11 1233456889999999987777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|+++..|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999764 89999999995 6788999999999999998654
No 142
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=362.88 Aligned_cols=229 Identities=19% Similarity=0.231 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCceeEEEECCEecCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~~---- 125 (497)
.|+++||++.|..+. +...+|+||||+|++||+++|+|+||||||||+++|+|++++. ...+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 489999999995321 2357999999999999999999999999999999999998641 1348999999987521
Q ss_pred -----CcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 010936 126 -----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (497)
..+.++||+|++. +.|.+||.+++.+......... ....+.++++.++++.+||.+..+ +.+.++.+|
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~L 159 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYEL 159 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 1246999999975 6788999999986432111000 111234567889999999975321 112366789
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
||||||||+||+||+.+|+||||||||+|||+.++.+++++|+++.++ |.|||++|||+ ..+.++||+|++|++|+++
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~iv 238 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTV 238 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999875 99999999995 6788999999999999999
Q ss_pred EEeCchhHH
Q 010936 275 YFGETSAAF 283 (497)
Q Consensus 275 ~~G~~~~~~ 283 (497)
+.|+.+++.
T Consensus 239 e~g~~~~i~ 247 (330)
T PRK15093 239 ETAPSKELV 247 (330)
T ss_pred EECCHHHHH
Confidence 999988764
No 143
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=348.93 Aligned_cols=223 Identities=26% Similarity=0.362 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|..+.+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYG-----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEEC-----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 578999999993 4679999999999999999999999999999999999975322248999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.++|++|++.+++ .||+||+.++...+.. ........+++.++++.++|.+...... +..+..|||||||||+|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHH
Confidence 1356999999998887 5999999987543210 0012334456788999999953221111 12456899999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||||+.+|+++||||||+|||+.++..+.+.|+++.+ |+|||++||++ +++.++||++++|++|++++.|+.+++.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999865 89999999996 6788999999999999999999887653
No 144
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-44 Score=355.04 Aligned_cols=219 Identities=24% Similarity=0.376 Sum_probs=186.9
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
...++++|+++.|.. +.+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 5 ~~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 5 SVMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENL 78 (271)
T ss_pred ceEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCH
Confidence 346999999999831 2357999999999999999999999999999999999999885 8999999987532
Q ss_pred --CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 --~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.++.++|++|++. .++.+||+||+.+..... .....+...++.++++.+||.+..++.+ ..||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 150 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQR 150 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHH
Confidence 1356999999974 677789999999875432 2233444567889999999987777754 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
++|||||+.+|++|||||||+|||+.++..+++.|++++++ ++|||++||++ .++ ..||++++|++|+++..|++++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM-DEA-ILADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech-hHH-hhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999876 59999999997 455 4799999999999999998876
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 229 ~~ 230 (271)
T PRK13632 229 IL 230 (271)
T ss_pred Hh
Confidence 54
No 145
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=348.85 Aligned_cols=222 Identities=23% Similarity=0.355 Sum_probs=184.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 489999999993 4579999999999999999999999999999999999986 321248999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++.+||+||+.+..... ......+..+++.++++.+++.+....... ..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~q 155 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQ 155 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHH
Confidence 1356999999999999999999998765432 111233344567889999998642211111 245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|+++..|++++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 67889999999999999999998876
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 234 ~ 234 (252)
T PRK14256 234 I 234 (252)
T ss_pred H
Confidence 5
No 146
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=353.58 Aligned_cols=220 Identities=29% Similarity=0.394 Sum_probs=187.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.|. .+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|++...
T Consensus 6 ~~l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYG-----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEEC-----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHH
Confidence 4699999999993 467999999999999999999999999999999999999885 8999999987432
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+||+||+.+......+. ..........+.++++.+||.+..++. +..||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv 152 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSGGQRQRA 152 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCChHHHHHH
Confidence 1246999999999999899999998753111000 001123345678899999998766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|++++.|+++++
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999874 89999999996 678999999999999999999998775
Q ss_pred H
Q 010936 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 232 ~ 232 (265)
T PRK10253 232 V 232 (265)
T ss_pred h
Confidence 4
No 147
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=350.97 Aligned_cols=224 Identities=25% Similarity=0.368 Sum_probs=184.5
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC-
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~- 125 (497)
...++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++ |..+.+|+|.++|.+...
T Consensus 11 ~~~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 11 PSKIQVRNLNFYYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred CceEEEEEEEEEeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 34689999999993 3579999999999999999999999999999999999986 211248999999987521
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++|++|++.+++ +||+||+.+...... ..+..+..+++.++++.+++.+...... +..+.+|||||
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq 161 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQ 161 (260)
T ss_pred ccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHH
Confidence 1356999999998887 799999998754321 1233444567889999999853211111 12456799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++..+||++++|++|+++..|++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999964 78999999996 578889999999999999999988
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 240 ~~~~ 243 (260)
T PRK10744 240 DTIF 243 (260)
T ss_pred HHHH
Confidence 7653
No 148
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=352.70 Aligned_cols=223 Identities=25% Similarity=0.348 Sum_probs=183.9
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~-- 125 (497)
..|+++||++.|. ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|. .+.+|+|+++|+++..
T Consensus 18 ~~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEEC-----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3699999999993 467999999999999999999999999999999999998741 1248999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
.++.++|++|++.+++. ||.||+.+....+.. ..+..+..+++.++++.+||.+...... +..+..||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~ 169 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQ 169 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHH
Confidence 13468999999988885 999999987543210 0122334566788999999964211111 124568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ ..+..+||++++|++|+++..|+++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999965 68999999996 6788999999999999999999877
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 248 ~~ 249 (267)
T PRK14235 248 KM 249 (267)
T ss_pred HH
Confidence 65
No 149
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=345.24 Aligned_cols=214 Identities=29% Similarity=0.436 Sum_probs=186.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|+++.+. .+.+|+|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYG-----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 46899999983 467999999999999999999999999999999999999986 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+||.+..++.+ ..||||||||++|||+
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARA 144 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 7999999999999999999999875543 1223344566888999999987777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|+.+++
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999999999999999875 89999999996 678899999999999999999887654
No 150
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.5e-43 Score=346.67 Aligned_cols=215 Identities=30% Similarity=0.461 Sum_probs=187.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
++++|+++.|. .+++|+|+||++.+||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhc
Confidence 46899999983 457999999999999999999999999999999999999885 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+|+.||+.+....+ ........+.+.++++.+++.+..++.+ ..|||||+||++||++
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~lara 144 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARA 144 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999875432 1223334466789999999987777654 4799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+.+++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999875 89999999996 6788999999999999999999887653
No 151
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=351.63 Aligned_cols=217 Identities=23% Similarity=0.331 Sum_probs=185.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 5899999999841 1246999999999999999999999999999999999999885 8999999987532
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. +++..|+.+|+.+..... ........+.+.++++.+++.+..++. +..||||||||++
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 152 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQRVA 152 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 677789999998875432 223444456788899999998777664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.. ||++++|++|++++.|+++++.
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999765 89999999996 46654 9999999999999999988764
No 152
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=347.67 Aligned_cols=222 Identities=24% Similarity=0.336 Sum_probs=182.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC---CCCCCceeEEEECCEecCC-
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~---~~~~~~~G~I~~~G~~~~~- 125 (497)
..|+++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+. ++. ..+|+|.++|.+...
T Consensus 2 ~~l~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWY-----GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEE-----CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccc
Confidence 368999999998 3467999999999999999999999999999999999973 331 138999999987531
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
..+.++|++|++.+++ .||.||+.++...+. ........+.++++++.+||.+...+.. +..+..|||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~ 151 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQ 151 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHH
Confidence 1346999999998887 599999998754321 1112234456788999999864322211 12456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++ .++.++||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~ 229 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999995 479999999996 578899999999999999999998
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14245 230 KKIF 233 (250)
T ss_pred HHHh
Confidence 8764
No 153
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=348.28 Aligned_cols=210 Identities=29% Similarity=0.417 Sum_probs=181.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.| +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSS-----FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHH
Confidence 58999999998 3457999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++|++|++.+++ .||+||+.+..... . . ...++.++++.++|. +..++ .+..||||||||++
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~ 141 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVS 141 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHH
Confidence 1356999999998887 59999998754321 1 1 134577899999996 44554 45679999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|+++..|+++++
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999874 99999999996 678889999999999999999988765
No 154
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-43 Score=349.72 Aligned_cols=222 Identities=23% Similarity=0.346 Sum_probs=183.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~--~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|+++| ....+|+|.++|++...
T Consensus 12 ~l~i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 12 VYQINGMNLWYG-----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred eEEEeeEEEEEC-----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 589999999983 45799999999999999999999999999999999999863 21248999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++. ||+||+.+...... .....+..++++++++.+++.+...... +..+.+|||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~q 162 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQ 162 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHH
Confidence 13469999999988886 99999988754321 1123344556788899999854211111 1245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.++||++++|++|+++..|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999965 79999999996 67889999999999999999999887
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 241 ~~ 242 (259)
T PRK14274 241 MF 242 (259)
T ss_pred Hh
Confidence 53
No 155
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.9e-44 Score=375.08 Aligned_cols=227 Identities=31% Similarity=0.406 Sum_probs=199.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCceeEEEECCEecC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK----- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~----- 124 (497)
.|+++||++.|... ++...+++||||++.+||++||+|.|||||||+.++|.|+++++ ...+|+|.++|.+..
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 69999999999754 23357999999999999999999999999999999999999876 456899999998631
Q ss_pred ----CCcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 125 ----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 125 ----~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
.+.+.|+|+||++ .+.|-+||.+-+.-....+. ..+.++.++++.++|+.+||++.... +.+|++||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG 158 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGG 158 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCch
Confidence 1236799999996 46777999999888766653 23477788899999999999876554 5699999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|++|||+ .-+.++||||++|++|++++.|
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999986 599999999996 6899999999999999999999
Q ss_pred CchhHHH
Q 010936 278 ETSAAFE 284 (497)
Q Consensus 278 ~~~~~~~ 284 (497)
++++++.
T Consensus 238 ~~~~i~~ 244 (539)
T COG1123 238 PTEEILS 244 (539)
T ss_pred CHHHHHh
Confidence 9999874
No 156
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=355.57 Aligned_cols=220 Identities=25% Similarity=0.375 Sum_probs=187.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|.. ..+.+|+||||++++||+++|+||||||||||+++|+|+++|....+|+|.++|.+...
T Consensus 5 ~l~i~~l~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSFTYPD---SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEEEcCC---CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 5899999999842 12469999999999999999999999999999999999998852113999999987532
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. +++.+||.||+.|..... ..+.++..+++.++++.+||.+..++. ++.|||||+||++
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~qrv~ 153 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQKQRVA 153 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHH
Confidence 1246999999974 667789999998864332 234555567788999999998776664 4679999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++ ..||++++|++|++++.|+++++.
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999875 99999999996 455 579999999999999999988764
No 157
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.9e-43 Score=340.35 Aligned_cols=208 Identities=27% Similarity=0.383 Sum_probs=178.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
++++|+++.|. .+++|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhcc
Confidence 46899999882 2468999999999999999999999999999999999886 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+|+.||+.+...... . .....++++.++++.+||.+..++. +..||||||||++|||+
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARC 142 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHH
Confidence 69999999999999999999987643211 1 1122345678899999998776664 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|+.+|++++|||||+|||+.++..+.+.|+++.++ |.|||++||++ .++.++||++++|++|++++.|+
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999999764 89999999995 57888999999999999998875
No 158
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=344.48 Aligned_cols=213 Identities=27% Similarity=0.397 Sum_probs=182.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
++++||++.|. .+ ..|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 2 l~~~~l~~~~~-----~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYH-----HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEEC-----Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhc
Confidence 78999999993 22 23999999999999999999999999999999999885 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+|+.||+.+...... .. ......++.++++.+||.+..++.+ ..||||||||++||++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lara 143 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARC 143 (232)
T ss_pred cEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHH
Confidence 69999999999999999999987632110 11 1233566889999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++++.|+.+++.
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999764 89999999996 6788999999999999999999877654
No 159
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=365.87 Aligned_cols=206 Identities=27% Similarity=0.410 Sum_probs=180.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|++ ||++.|. ++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 2 l~~-~l~k~~~-----~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLG-----DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeC-----CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccc
Confidence 566 8898882 233 3 899999999999999999999999999999999886 8999999987421
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+.++|++|+..++|.+||+||+.|+... ...++++++++.+||.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qR 136 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQR 136 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHH
Confidence 135799999999999999999999986421 1235688999999998777764 45799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++ +++..+||++++|++|+++..|++++
T Consensus 137 valaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 68999999999999999999999988
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 216 i~ 217 (352)
T PRK11144 216 VW 217 (352)
T ss_pred HH
Confidence 74
No 160
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=346.98 Aligned_cols=222 Identities=28% Similarity=0.382 Sum_probs=182.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 589999999993 4579999999999999999999999999999999999853 421238999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++ +||+||+.+...... ..........+.++++.+++.+...+.. +..+..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~q 155 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQ 155 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHH
Confidence 1346999999998887 799999998754321 1112333456788899998753211111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++ +++.++||++++|++|++++.|+.++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999865 68999999996 57889999999999999999999877
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 234 ~~ 235 (252)
T PRK14239 234 MF 235 (252)
T ss_pred HH
Confidence 53
No 161
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-43 Score=355.44 Aligned_cols=220 Identities=21% Similarity=0.281 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.|+++|+++.|..+......+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccccccc
Confidence 48999999999421000135999999999999999999999999999999999999885 899999998642
Q ss_pred ----CCcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 125 ----LSFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ----~~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
..++.++|++|++. +++ .||+||+.+..... .....+...++.++++.++|. +..++. +..|||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~~LS~ 153 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS-----PFELSG 153 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----hhhCCH
Confidence 11346999999973 444 59999999875322 223344445678899999994 555654 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||++ +++.++||++++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999764 89999999996 578899999999999999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|+++++.
T Consensus 233 g~~~~~~ 239 (289)
T PRK13645 233 GSPFEIF 239 (289)
T ss_pred CCHHHHh
Confidence 9987764
No 162
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.8e-44 Score=398.79 Aligned_cols=242 Identities=27% Similarity=0.357 Sum_probs=197.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.++.+|+.++++.+++.+. + ... ..+....++++|+++.|+. .++++|+|+||++++
T Consensus 420 ~~~~~~~ri~~~l~~~~e~~~---~------------~~~---~~~~~~~I~~~nvsf~Y~~---~~~~vL~~isl~i~~ 478 (686)
T TIGR03797 420 AVIPLWERAKPILEALPEVDE---A------------KTD---PGKLSGAIEVDRVTFRYRP---DGPLILDDVSLQIEP 478 (686)
T ss_pred HHHHHHHHHHHHhcCCccccc---C------------cCC---CCCCCceEEEEEEEEEcCC---CCccceeeeEEEECC
Confidence 577889999999976544211 0 000 0011225999999999952 246799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-- 552 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-- 552 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999996 9999999998642 24679999999999987 99999998632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.+. +.+.++++..|+ ++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 553 ----~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 553 ----LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 122 234555555554 3467899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++ ++|+|++||++ +..+.||+|++|++|++++.|+.+++.+
T Consensus 624 e~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 624 QAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 58999999996 3567799999999999999999888653
No 163
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-43 Score=343.59 Aligned_cols=214 Identities=29% Similarity=0.462 Sum_probs=185.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|+++.|. . ++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHc
Confidence 46889999883 2 3899999999999999999999999999999999999885 8999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..++.+ +.|||||+|||+||||
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lara 143 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARA 143 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHH
Confidence 7999999999999999999998875332 2233444556788999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|++++|||||+|||+.++..+++.|++++++ |+|||++||++ .++.++||++++|++|++++.|+.+++.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999765 99999999996 6788999999999999999999877653
No 164
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-43 Score=348.20 Aligned_cols=219 Identities=27% Similarity=0.403 Sum_probs=184.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+++|.. +.+|+|.++|.+...
T Consensus 4 ~l~i~~v~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEEC-----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 488999999993 4579999999999999999999999999999999999987421 248999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|++.+++.+||+||+.++...+. .......++.++++++.+||.+ ..++ .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 151 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSG 151 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCH
Confidence 13569999999999999999999998754321 1123344567888999999842 3333 4567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee------CC
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GG 271 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~------~G 271 (497)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|+ +|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCc
Confidence 999999999999999999999999999999999999999999964 68999999996 67889999999997 79
Q ss_pred eEEEEeCchhHH
Q 010936 272 KTVYFGETSAAF 283 (497)
Q Consensus 272 ~iv~~G~~~~~~ 283 (497)
++++.|+++++.
T Consensus 230 ~i~~~~~~~~~~ 241 (258)
T PRK14241 230 RLVEIDDTEKIF 241 (258)
T ss_pred eEEecCCHHHHH
Confidence 999999887753
No 165
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=382.12 Aligned_cols=220 Identities=23% Similarity=0.324 Sum_probs=189.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.| +++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +.+|+|.++|.+...
T Consensus 5 ~l~~~nl~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTF-----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEe-----CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999861 138999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++||+|++.+++.+||+||+.++...+.....+..+..++++++++.+||.+..++.+ .+|||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~ 153 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVE 153 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHH
Confidence 12569999999999999999999998754321111223344567889999999987777755 479999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ .++..+||++++|++|++++.|+++++
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999999999999999999999999987899999999995 678899999999999999999998765
No 166
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-43 Score=346.74 Aligned_cols=223 Identities=24% Similarity=0.342 Sum_probs=183.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~-- 125 (497)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWYG-----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEEC-----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 3589999999983 467999999999999999999999999999999999998651 1148999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
..+.++|++|++.+++ +|++||+.+...... .....+...++.++++.++|.+...... +..+..||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~ 153 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDL-KKSALKLSGGQQ 153 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHH
Confidence 1356999999998887 899999998754321 1123344556788999998853211111 124568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||++||++|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++ .++.++||++++|++|++++.|+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999999876 58999999996 6788999999999999999999988
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
++.
T Consensus 232 ~~~ 234 (251)
T PRK14270 232 KIF 234 (251)
T ss_pred HHh
Confidence 753
No 167
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.7e-43 Score=351.02 Aligned_cols=222 Identities=21% Similarity=0.331 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEEccC----CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-
Q 010936 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~- 125 (497)
.|+++||++.|..+. .+.+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCC
Confidence 489999999994211 01256999999999999999999999999999999999999886 9999999987532
Q ss_pred ----CcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHH
Q 010936 126 ----SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgG 198 (497)
..+.++|++|++. +++.+||.+++.+...... .....+..+.+.++++.+||. +..++. +..||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G 153 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPG 153 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHH
Confidence 1246999999975 6788899999988654321 123334456788999999994 455553 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++..+||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999874 89999999996 6788899999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 233 ~~~~~~ 238 (267)
T PRK15112 233 STADVL 238 (267)
T ss_pred CHHHHh
Confidence 877653
No 168
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-43 Score=345.17 Aligned_cols=221 Identities=25% Similarity=0.401 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC--CCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS--NAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~--~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 488999999993 35799999999999999999999999999999999998763 11248999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++ +||+||+.+...... ..+..+.++.+.++++.+++.+...... +..+.+|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 153 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQ 153 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHH
Confidence 1346999999998888 899999998754321 1123344566788888888753211111 1245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++ ..+.++||++++|++|+++..|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 79999999995 67889999999999999999998876
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 232 ~ 232 (250)
T PRK14240 232 L 232 (250)
T ss_pred H
Confidence 5
No 169
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=380.80 Aligned_cols=218 Identities=24% Similarity=0.394 Sum_probs=189.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 4 ~i~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAF-----PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEe-----CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 48999999999 3467999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+||+||+.++...... ...+..+.++++.++++.+||.+..++.+ .+|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv 150 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMV 150 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHH
Confidence 124699999999999999999999987432210 11223444567889999999988777655 46999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ +++..+||+|++|++|+++..|+++++
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999999999987799999999996 678899999999999999999988765
No 170
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.8e-43 Score=364.20 Aligned_cols=207 Identities=29% Similarity=0.432 Sum_probs=180.7
Q ss_pred eEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------C
Q 010936 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (497)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---------~ 126 (497)
||++.|. ++. + |+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+... .
T Consensus 4 ~l~~~~~-----~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLG-----DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEEC-----CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchh
Confidence 7888882 333 4 999999999999999999999999999999999885 8999999987421 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++.++|++|++.+++.+||+||+.|+.... ...+.+++++++++.+||.+..++.+ .+|||||||||+||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalA 143 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIG 143 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999875421 12334556889999999988777654 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++..+||++++|++|+++..|+++++.
T Consensus 144 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 144 RALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999875 89999999996 6788999999999999999999988764
No 171
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-43 Score=345.28 Aligned_cols=222 Identities=22% Similarity=0.325 Sum_probs=183.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYG-----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeC-----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 489999999983 467999999999999999999999999999999999998741 1148999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++ +||+||+.+...... .......++.+.++++.+++.+..+.. .+..+.+|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~q 153 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQ 153 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHH
Confidence 1356999999998888 799999998754321 112233445678889999986422111 12355689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.++||++++|++|+++..|++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999865 78999999996 57889999999999999999998876
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 232 ~~ 233 (250)
T PRK14262 232 IV 233 (250)
T ss_pred HH
Confidence 54
No 172
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-43 Score=348.08 Aligned_cols=223 Identities=26% Similarity=0.342 Sum_probs=185.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC-
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~- 125 (497)
...|+++|+++.| +.+++|+|+||++++||+++|+|||||||||||++|+|+++|. .+.+|+|.++|.+...
T Consensus 18 ~~~l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 18 EIALSTKDLHVYY-----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CeEEEEeeEEEEE-----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 4469999999999 3467999999999999999999999999999999999998641 1248999999987531
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
..+.++|++|++.+++ .||+||+.++.... ........+.++.++++.++|.+..+... +..+..|||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~ 168 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQ 168 (267)
T ss_pred cCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHH
Confidence 1346999999998887 59999999875432 11123344566888999999864322222 23567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++ +++.++||++++|++|++++.|++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 246 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999954 79999999996 578899999999999999999998
Q ss_pred hhH
Q 010936 280 SAA 282 (497)
Q Consensus 280 ~~~ 282 (497)
+++
T Consensus 247 ~~~ 249 (267)
T PRK14237 247 RNI 249 (267)
T ss_pred HHH
Confidence 775
No 173
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.8e-43 Score=344.71 Aligned_cols=200 Identities=33% Similarity=0.478 Sum_probs=172.3
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHH
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISY 151 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~ 151 (497)
|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|++........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 57999999999999999999999999999999999885 999999998764322235899999999999999999998
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
......+ .....+..+++.++++.+||.+..++.+ .+|||||||||+||++|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 2333444566889999999987777654 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 232 FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 232 ~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
.+.+.|++++++ |+|||++||++ .++.++||++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999774 89999999996 67889999999999999998886543
No 174
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-43 Score=351.97 Aligned_cols=220 Identities=26% Similarity=0.395 Sum_probs=186.4
Q ss_pred EEEEEeEEEEEEccCC-cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 51 RLTWKDLTVMVTLSNG-ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
.++++|+++.|..... ..+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccH
Confidence 5899999999942110 1356999999999999999999999999999999999999886 8999999987532
Q ss_pred --CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 --~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
..+.++|++|++. .+...||.||+.|+.... ..+..+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qr 152 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQR 152 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHH
Confidence 1356999999974 233469999999875432 2334555677899999999988777754 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+||++|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.. ||++++|++|++++.|++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~-~~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM-EEAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 99999999996 45654 99999999999999999887
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 231 ~~ 232 (280)
T PRK13633 231 IF 232 (280)
T ss_pred Hh
Confidence 64
No 175
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-44 Score=403.67 Aligned_cols=252 Identities=29% Similarity=0.435 Sum_probs=206.8
Q ss_pred CchhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 010936 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (497)
+.|++||.+|+++.+..|..+..... .+ ...+....++++|++++|+.+ ++..||+|+||.|+
T Consensus 315 ~~a~~aa~~I~~~i~~~~~i~~~~~~-----------~~----~~~~~~g~ief~nV~FsYPsR--pdv~Il~g~sl~i~ 377 (1228)
T KOG0055|consen 315 AKARAAAYRIFETIDRKPSIDPYSKG-----------GR----VLSSIKGEIEFRNVCFSYPSR--PDVKILKGVSLKIP 377 (1228)
T ss_pred hccccchHHHHHHhcCCCCCCccccc-----------CC----cccccccceEEEEEEecCCCC--CcchhhCCeEEEeC
Confidence 36889999999999998887542200 00 112234569999999999754 35689999999999
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
+|+.+||+|||||||||++++|.++++|. +|+|++||.+++. .+.++|.|.|+|.+|.. ||+||+.|+..-
T Consensus 378 ~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~d 453 (1228)
T KOG0055|consen 378 SGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKPD 453 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCCc
Confidence 99999999999999999999999999996 9999999998542 24679999999988875 999999998432
Q ss_pred cCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 010936 156 RLPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 156 ~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
.+.++..+ .+.+.+ ..|++..+|.+|+..+ +||||||||++|||||+++|+|||||||||+||+.++
T Consensus 454 -----at~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se 525 (1228)
T KOG0055|consen 454 -----ATREEIEEAAKAANAHDFI--LKLPDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 525 (1228)
T ss_pred -----ccHHHHHHHHHHccHHHHH--HhhHHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHH
Confidence 22222222 223333 3567889999998444 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
..+.+.|.+.. .|+|.|+++|++ +.+.+ +|+|++|++|++++.|+++|++.
T Consensus 526 ~~Vq~ALd~~~-~grTTivVaHRL-StIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 526 RVVQEALDKAS-KGRTTIVVAHRL-STIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHHhh-cCCeEEEEeeeh-hhhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 99999998875 489999999996 45655 99999999999999999999875
No 176
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=389.07 Aligned_cols=246 Identities=26% Similarity=0.358 Sum_probs=197.9
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+..+.+|+.++++.++.... . + .. ..+....++++|+++.|+. .++++|+|+|+++++
T Consensus 310 ~~~~~~~ri~~~~~~~~~~~~-~-----~-------~~-----~~~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 368 (582)
T PRK11176 310 RGMAACQTLFAILDLEQEKDE-G-----K-------RV-----IERAKGDIEFRNVTFTYPG---KEVPALRNINFKIPA 368 (582)
T ss_pred HHHHHHHHHHHHhcCCCcCCC-C-----C-------cC-----CCCCCCeEEEEEEEEecCC---CCCccccCceEEeCC
Confidence 467788999998875433211 0 0 00 0111225999999999942 236799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|+|+++|. +|+|.+||.+... .++.++||||++.+|+. |++|||.++..
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-- 442 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART-- 442 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC--
Confidence 9999999999999999999999999996 8999999998532 24679999999999986 99999988631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+..+. +.+.++++..| |++..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 --~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t 515 (582)
T PRK11176 443 --EQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_pred --CCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 11222 23444455444 45667999987 467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++.+ ++|+|++||++ ...+.||+|++|++|++++.|+.+++.+
T Consensus 516 ~~~i~~~l~~~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 516 ERAIQAALDELQK-NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999998754 69999999996 3577899999999999999999887653
No 177
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=6.3e-43 Score=346.49 Aligned_cols=216 Identities=27% Similarity=0.349 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe-----cCC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~-----~~~ 125 (497)
.|+++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+ +..
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCcccccccccc
Confidence 589999999983 357999999999999999999999999999999999999886 8999999986 421
Q ss_pred ---------CcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 010936 126 ---------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (497)
Q Consensus 126 ---------~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 193 (497)
..+.++|++|++. +++.+|+.||+.+...... .....+....+.++++.+++.+ ..++. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 150 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL-----PT 150 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC-----Cc
Confidence 1235999999973 6778899999976532211 1112234556788999999964 45553 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ ..+..+||++++|++|+
T Consensus 151 ~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGR 229 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998775 89999999995 67888999999999999
Q ss_pred EEEEeCchhH
Q 010936 273 TVYFGETSAA 282 (497)
Q Consensus 273 iv~~G~~~~~ 282 (497)
+++.|+++++
T Consensus 230 i~~~~~~~~~ 239 (258)
T PRK11701 230 VVESGLTDQV 239 (258)
T ss_pred EEEeCCHHHH
Confidence 9999988765
No 178
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=343.59 Aligned_cols=220 Identities=26% Similarity=0.362 Sum_probs=183.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~-- 125 (497)
..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 3 LLLSAQDVNIYYG-----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEEeeeEEEEC-----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 3689999999983 4679999999999999999999999999999999999987631 137999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LS 196 (497)
.++.++|++|++.+++.+|+.||+.+...... .....+..+.+.++++.+++.+ ..++ .++.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS 150 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKT-----PATGLS 150 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcC-----CcccCC
Confidence 13469999999999999999999987654321 1122333455677777777642 3344 456799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999865 69999999996 678889999999999999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|+++++.
T Consensus 229 ~~~~~~~ 235 (252)
T PRK14272 229 GPTDQLF 235 (252)
T ss_pred CCHHHHH
Confidence 9987753
No 179
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.5e-43 Score=344.03 Aligned_cols=198 Identities=29% Similarity=0.429 Sum_probs=171.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----CcCcEEEEc-CCCCCCCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVT-QDDNLIGT 142 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~~~i~yv~-Q~~~l~~~ 142 (497)
.+++|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+... ..+.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 467999999999999999999999999999999999999886 8999999986421 235689998 55678888
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPT 222 (497)
+||+||+.+..... .....+..+.+.++++.+||.+..++.+ ..||||||||++||++|+.+|++|||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998875542 2233444556788999999988877765 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 223 SGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999774 89999999996 5788999999999999998754
No 180
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-43 Score=349.28 Aligned_cols=221 Identities=26% Similarity=0.397 Sum_probs=181.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~-- 125 (497)
..|+++|+++.| +.+.+|+|+||+|++||+++|+|||||||||||++|+|++++.. +.+|+|.++|.+...
T Consensus 12 ~~l~i~nl~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISY-----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEE-----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 469999999999 34679999999999999999999999999999999999986310 148999999987421
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
.++.++|++|++.+++. ||+||+.+.+..+ ... ...++.+.++++.+++........ +..+..||||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~ 160 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKL-NESGYSLSGGQQ 160 (269)
T ss_pred CCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhh-CCCcccCCHHHH
Confidence 12469999999988885 9999999876432 111 123455677888888743211111 224568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC----------
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG---------- 270 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~---------- 270 (497)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++..+||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~ 238 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGK 238 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccc
Confidence 999999999999999999999999999999999999999954 78999999996 688999999999996
Q ss_pred -CeEEEEeCchhHH
Q 010936 271 -GKTVYFGETSAAF 283 (497)
Q Consensus 271 -G~iv~~G~~~~~~ 283 (497)
|++++.|+++++.
T Consensus 239 ~g~~~~~~~~~~~~ 252 (269)
T PRK14259 239 VGYLVEFNETKKIF 252 (269)
T ss_pred cceEEEeCCHHHHH
Confidence 6789999988764
No 181
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.6e-43 Score=385.33 Aligned_cols=241 Identities=21% Similarity=0.279 Sum_probs=198.8
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.++++|+.++++.++.... . . +.. .....++++|+++.|+ .++++|+|+|+++++
T Consensus 310 ~~~~s~~ri~~~l~~~~~~~~---~--~---------~~~-----~~~~~i~~~~v~f~y~----~~~~il~~i~l~i~~ 366 (592)
T PRK10790 310 QAVVAGERVFELMDGPRQQYG---N--D---------DRP-----LQSGRIDIDNVSFAYR----DDNLVLQNINLSVPS 366 (592)
T ss_pred HHHHHHHHHHHHhcCCCccCC---C--C---------ccC-----CCCCeEEEEEEEEEeC----CCCceeeceeEEEcC
Confidence 467899999999875433110 0 0 000 0112489999999995 235699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|+|+++|. +|+|.+||.+... .++.++||||++.+|+. |++|||.++..
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~-- 440 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRD-- 440 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCC--
Confidence 9999999999999999999999999996 8999999998542 24679999999999998 99999998731
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.+. +.+.++++.+|+ ++..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 441 ----~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t 511 (592)
T PRK10790 441 ----ISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511 (592)
T ss_pred ----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 122 335666666664 4567898886 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++.+ ++|+|++||++ .....||+|++|++|++++.|+.+++.
T Consensus 512 ~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 512 EQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999998865 69999999997 356779999999999999999998875
No 182
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=346.64 Aligned_cols=223 Identities=25% Similarity=0.340 Sum_probs=181.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~-- 125 (497)
..++++|+++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+ +..+.+|+|.++|++...
T Consensus 20 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEeC-----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 4699999999993 4679999999999999999999999999999999999864 211248999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
..+.++|++|++.+++. ||+||+.+...... .......+..+.+.++.+++.+...... +..+..||||||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~ 170 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRL-HSSALSLSGGQQ 170 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHH-hcCcccCCHHHH
Confidence 13469999999988885 99999998753221 1112233455777888888853211111 124567999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|++++.|+++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999965 68999999996 5788999999999999999999887
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
++.
T Consensus 249 ~~~ 251 (268)
T PRK14248 249 QIF 251 (268)
T ss_pred HHH
Confidence 653
No 183
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-43 Score=344.44 Aligned_cols=222 Identities=23% Similarity=0.353 Sum_probs=181.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.-+++|+++.| +.+.+|+|+||++++||+++|+|+||||||||+++|+|+.+ |..+.+|+|.++|++...
T Consensus 5 ~~~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEE-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 35789999988 34679999999999999999999999999999999999976 211248999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++. ||+||+.+....+ .........++.+.++++.+||.+...+.+. ..+..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~q 156 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQ 156 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHH
Confidence 13569999999988886 9999999874332 1111223344567889999999653222221 245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999854 89999999996 57889999999999999999998876
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 235 ~ 235 (251)
T PRK14244 235 I 235 (251)
T ss_pred H
Confidence 5
No 184
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-43 Score=380.03 Aligned_cols=218 Identities=23% Similarity=0.358 Sum_probs=188.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.| +++.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSF-----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEc-----CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDK---MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
..+.++||+|++.+++.+||+||+.++..... ... .+..+..+++.++++.+||.+..++.+ .+||||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~ 151 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHK 151 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHH
Confidence 12469999999999999999999987642110 001 123344567889999999987777755 47999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
|||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||++++|++|++++.|+++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999999988899999999995 6788999999999999999999987
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 231 ~~ 232 (510)
T PRK09700 231 DV 232 (510)
T ss_pred hC
Confidence 65
No 185
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.2e-43 Score=384.77 Aligned_cols=246 Identities=28% Similarity=0.405 Sum_probs=201.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|.... +. .. . . ......++++|+++.|+. +++.+|+|+||++++
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~---~~-~~---------~---~-~~~~~~i~~~~v~f~y~~---~~~~il~~i~~~i~~ 365 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTF---PT-TS---------T---A-AADQVSLTLNNVSFTYPD---QPQPVLKGLSLQIKA 365 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCC---Cc-cc---------C---C-CCCCCeEEEEEEEEECCC---CCCcceecceEEECC
Confidence 578899999999987665321 00 00 0 0 011235999999999942 235699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.+||+||||||||||+++|+|+++|. +|+|++||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 439 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-- 439 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC--
Confidence 9999999999999999999999999986 9999999998542 24579999999999986 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQ------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
..+ ++.+.++++..++. +..||.+|+ ....||||||||++|||||+++|++|+|||||++||+.++
T Consensus 440 ---~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 440 ---NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred ---ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 112 23466677777764 456888986 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
..+.+.|+++. +++|+|+++|+++ . ...||+|++|++|++++.|+.+++.+
T Consensus 512 ~~i~~~l~~~~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 512 RQILELLAEHA-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHHHHc-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999985 4799999999974 4 45699999999999999999887653
No 186
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-43 Score=337.17 Aligned_cols=200 Identities=30% Similarity=0.428 Sum_probs=172.9
Q ss_pred eEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---------C
Q 010936 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S 126 (497)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---------~ 126 (497)
||+++|. ++.+ |+||++++ |+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 5 ~l~~~~~-----~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLP-----DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecC-----Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhH
Confidence 8899883 3444 99999999 999999999999999999999999885 8999999986421 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++|++|++.+++.+|++||+.+..... .....++++.++++.+|+.+..++. +..||||||||++||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 143 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALA 143 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHH
Confidence 346999999999999999999998875321 1233445688899999998766654 457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|++++.|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999875 89999999995 6788999999999999998765
No 187
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-43 Score=334.43 Aligned_cols=195 Identities=36% Similarity=0.631 Sum_probs=166.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----C
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~ 126 (497)
.++|+|+++.|+.+. +++.+|+|+||++++||+++|+||||||||||+++|+|+++|..+.+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 489999999997642 35689999999999999999999999999999999999998321249999999987532 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++|++|++.+++.+||+||+.++.... .++ .+..||||||||++||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~Ge~qrl~la 130 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGGERKRVSIA 130 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHHHHHHHHHH
Confidence 356999999999999999999998763210 222 4457999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+||+.+|++|||||||+|||+.++..+++.|++++++ +.|+|+++|+..+++.++||++++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999775 6777777766456788999999999999998754
No 188
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-43 Score=322.35 Aligned_cols=214 Identities=29% Similarity=0.429 Sum_probs=191.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
+...+++.+|+. ..+.+|+|||+++.+||.+.++||||||||||||+++|+.+|. .|+|.+||+++.-....-|
T Consensus 4 l~~~~~sl~y~g---~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgaerg 77 (259)
T COG4525 4 LNVSHLSLSYEG---KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAERG 77 (259)
T ss_pred eehhheEEecCC---cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCccce
Confidence 556778888842 2255999999999999999999999999999999999999996 8999999998754434568
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
.|+|++.++|.+||.||+.|+..++ ++++.++.+++.+.+..+||++..++.+ .+|||||||||.|||||+.
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAV 149 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhc
Confidence 9999999999999999999999886 6788899999999999999998877654 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee--CCeEEEEeCch
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS--GGKTVYFGETS 280 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 280 (497)
+|++|+||||+++||.-++.++.++|-++++ .|+.++++||+. +|+.-+++++++|+ .|+++..-+++
T Consensus 150 eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 150 EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999999999999999999999887 599999999995 68888999999998 68998877665
No 189
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-43 Score=348.70 Aligned_cols=220 Identities=30% Similarity=0.377 Sum_probs=183.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-----CceeEEEECCEecCC-
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKL- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~-----~~~G~I~~~G~~~~~- 125 (497)
|+++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+++|.. ..+|+|.++|.+...
T Consensus 2 l~~~nl~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVAR-----RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEE-----CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 7899999998 34679999999999999999999999999999999999998730 127999999987532
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
..+.++|++|++.+++.+||+||+.+....... ......+..+.+.++++.+||.+..++. +..||||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 151 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGEL 151 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHH
Confidence 124589999998766668999999886321100 0111123345678899999998766654 457999999
Q ss_pred HHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 201 RRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 201 qRv~IA~aL~---------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
|||+|||+|+ .+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++ +++.++||++++|++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 9999999999 599999999999999999999999999999876 89999999996 678889999999999
Q ss_pred CeEEEEeCchhH
Q 010936 271 GKTVYFGETSAA 282 (497)
Q Consensus 271 G~iv~~G~~~~~ 282 (497)
|++++.|+++++
T Consensus 231 G~i~~~g~~~~~ 242 (272)
T PRK13547 231 GAIVAHGAPADV 242 (272)
T ss_pred CeEEEecCHHHH
Confidence 999999988765
No 190
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-43 Score=327.94 Aligned_cols=218 Identities=30% Similarity=0.434 Sum_probs=187.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
+|+.+||||++ ..+.+|++||++++|||+++|+||||||||||||.|+|-+.|+ +|++.+||.+....
T Consensus 1 mi~a~nls~~~-----~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 1 MIRAENLSYSL-----AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred CeeeeeeEEEe-----ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHH
Confidence 37889999999 4688999999999999999999999999999999999999986 89999999975321
Q ss_pred -cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 127 -~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.+.-+.+||+..+-..+||+|.+.++..-... .....+..+.+++.|...++.+.+.+.+ ..|||||||||.+
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVql 146 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQL 146 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHH
Confidence 24568999998875456999999998643211 1122244556888999999988877644 4799999999999
Q ss_pred HHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 206 ALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 206 A~aL~~------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||.|+. ++++||||||||+||...+..++++.++++++|..|+++.||. +....+||||++|.+|+++..|++
T Consensus 147 ARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 147 ARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCH
Confidence 999985 4569999999999999999999999999999999999999996 678999999999999999999999
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
++++
T Consensus 226 ~~vl 229 (259)
T COG4559 226 QDVL 229 (259)
T ss_pred HHhc
Confidence 9876
No 191
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=344.89 Aligned_cols=222 Identities=27% Similarity=0.401 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC--ceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF--LSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~--~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|++++... .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYYN-----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEEC-----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 589999999982 45799999999999999999999999999999999999875311 38999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++ +||+||+.++...+. ..+..+..+.+.++++.+++.+...... +.++..|||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 157 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKL-NKSALGLSGGQQQ 157 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHH
Confidence 1246999999999888 799999988754321 1223344456788899898843211111 2255689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee-----CCeEEEE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-----GGKTVYF 276 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~-----~G~iv~~ 276 (497)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|+ +|++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999865 69999999996 68899999999998 5999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|+++++.
T Consensus 236 ~~~~~~~ 242 (259)
T PRK14260 236 GVTTQIF 242 (259)
T ss_pred CCHHHHh
Confidence 9988753
No 192
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=342.68 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=181.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEEC-----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 588999999983 467999999999999999999999999999999999998752 0248999999987521
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
.++.++|++|++.+++ .||.||+.+..... .........+++.+.++.+++.+...... +..+.+||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qr 153 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQR 153 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHH
Confidence 1346999999999887 79999999875332 11122334456778888888754221111 12456899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|+++..|+++++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999999996 678999999999999999999987664
No 193
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=342.46 Aligned_cols=221 Identities=26% Similarity=0.336 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEE-----CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 58999999998 3467999999999999999999999999999999999987531 1137999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++. ||+||+.+....+. .......+..+.++++.+++.+...+.. +..+..|||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~q 156 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQ 156 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHH
Confidence 13469999999998885 99999998755431 1122334456788888888853221111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 99999999999999999999999999999999999999976 58999999995 67888999999999999999999876
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 235 ~ 235 (253)
T PRK14261 235 I 235 (253)
T ss_pred H
Confidence 5
No 194
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=342.07 Aligned_cols=222 Identities=24% Similarity=0.356 Sum_probs=182.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYH-----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEEC-----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 488999999983 4679999999999999999999999999999999999998741 125999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++. ||+||+.+....+. ........+.++++++.++|.+...... +..+..|||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~q 154 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQ 154 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHH
Confidence 13569999999998885 99999998754321 0112223455777888888754222211 2356689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||++ .++.++||++++|++|++++.|++++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 589999999995 67889999999999999999998876
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 233 ~~ 234 (251)
T PRK14249 233 IF 234 (251)
T ss_pred HH
Confidence 53
No 195
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=346.17 Aligned_cols=223 Identities=26% Similarity=0.354 Sum_probs=185.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~-- 125 (497)
..|+++|+++.| +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. .+.+|+|.++|.++..
T Consensus 20 ~~l~i~nl~~~~-----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGF-----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEE-----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 468999999999 3467999999999999999999999999999999999998751 1248999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++ +||+||+.+..... ...+..+....+.++++.++|.+..++... ..+..|||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~q 170 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQ 170 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHH
Confidence 1356999999998888 79999999874322 112334444567788999998753322221 245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|+++..|++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 48999999995 67889999999999999999999877
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
+.
T Consensus 249 ~~ 250 (276)
T PRK14271 249 LF 250 (276)
T ss_pred HH
Confidence 63
No 196
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.7e-43 Score=369.93 Aligned_cols=225 Identities=28% Similarity=0.350 Sum_probs=194.4
Q ss_pred eeEEEEEeEEEEEEccC------CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010936 49 SARLTWKDLTVMVTLSN------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
...++++||++.|..++ .+...+++||||++++||++||+|+||||||||.++|+|+.+|. +|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~ 354 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQD 354 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcc
Confidence 45689999999997532 23457899999999999999999999999999999999999995 9999999976
Q ss_pred cC-------CCcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 010936 123 TK-------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (497)
Q Consensus 123 ~~-------~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (497)
.. ..++++-+|+|++ .+.|.+||.+++......... ....+.++++.++++.+||... +.+.+|+
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~ 428 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPH 428 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCch
Confidence 21 1134677888885 689999999999988776533 2255667789999999999842 3344889
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+||||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.|++|||. ..+..+||||++|++|+
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGR 507 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCe
Confidence 99999999999999999999999999999999999999999999999876 99999999995 78999999999999999
Q ss_pred EEEEeCchhHH
Q 010936 273 TVYFGETSAAF 283 (497)
Q Consensus 273 iv~~G~~~~~~ 283 (497)
+|+.|+.+++.
T Consensus 508 iVE~G~~~~v~ 518 (539)
T COG1123 508 IVEEGPTEKVF 518 (539)
T ss_pred EEEeCCHHHHh
Confidence 99999887764
No 197
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=347.84 Aligned_cols=218 Identities=22% Similarity=0.325 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|... ..+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHH
Confidence 58999999999421 1245999999999999999999999999999999999999886 8999999987532
Q ss_pred CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++. .++..||.||+.++.... .....+..++++++++.+||.+..++. +..||||||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ 150 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVA 150 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHH
Confidence 1356999999974 566789999998865422 223444456788999999998776664 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++. .||++++|++|+++..|+++++.
T Consensus 151 lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 151 VAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL-DEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999875 99999999996 4564 69999999999999999988764
No 198
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.3e-43 Score=376.98 Aligned_cols=212 Identities=24% Similarity=0.329 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 11 ~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQY-----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEe-----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 59999999999 3467999999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+||+||+.+.... ..+.++++.++++.+||.+..++.+ .+|||||||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ 150 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVE 150 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHH
Confidence 123599999999999999999999886321 1233466888999999987777755 479999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999999999999999999999999999988899999999995 6788999999999999999999987653
No 199
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=340.77 Aligned_cols=221 Identities=25% Similarity=0.341 Sum_probs=180.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 5 IITSSDVHLFYG-----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred eEEEEeEEEEEC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 589999999983 4679999999999999999999999999999999999865 321248999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++ .||+||+.+....+.. ......++.+.+.++.+++........ +..+..|||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~q 155 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQQ 155 (252)
T ss_pred cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHHH
Confidence 1356999999998888 6999999987543211 112222345677788887742211111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||+|++|++|+++..|++.+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 67889999999999999999998876
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 234 ~ 234 (252)
T PRK14255 234 M 234 (252)
T ss_pred H
Confidence 5
No 200
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=343.19 Aligned_cols=223 Identities=26% Similarity=0.387 Sum_probs=185.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++|++++|+|+|||||||||++|+|+++|+. ..+|+|.++|+++..
T Consensus 7 ~l~~~nl~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYD-----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeC-----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 589999999993 3569999999999999999999999999999999999988731 137999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++ +|+.||+.+...... ..+..+..+++.++++.+++.+..+... +..+..|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~q 157 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQ 157 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHH
Confidence 1346999999988888 899999988753321 1123334466788999999854322222 2255689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeC-----CeEEE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG-----GKTVY 275 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~-----G~iv~ 275 (497)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||++ .++.++||+|++|++ |++++
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999999875 589999999996 688999999999999 99999
Q ss_pred EeCchhHH
Q 010936 276 FGETSAAF 283 (497)
Q Consensus 276 ~G~~~~~~ 283 (497)
.|+++++.
T Consensus 237 ~~~~~~~~ 244 (261)
T PRK14258 237 FGLTKKIF 244 (261)
T ss_pred eCCHHHHH
Confidence 99998764
No 201
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-43 Score=319.65 Aligned_cols=211 Identities=31% Similarity=0.417 Sum_probs=185.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------ 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~------ 124 (497)
.|+++++++.+.... ...+||++|++.|++||-+||+|||||||||||-+++|+..|+ +|+|.+.|++..
T Consensus 6 ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQGE-GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCCC-cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHH
Confidence 478888888875432 3467999999999999999999999999999999999999986 999999998742
Q ss_pred ---CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 125 ---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 125 ---~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.+.+++|+|||...+.|+||..||+...+.++.. +..+....+.++|+.+||.+..+. +|.+|||||+|
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQ 153 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQ 153 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchHHH
Confidence 2346899999999999999999999999887632 233445678899999999877665 67789999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
||+||||++..|+|||.||||.+||..+..+|.++|-.+.++ |.|.|++|||| .+...|||.+-|.+|+++.
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999999875 99999999997 4788999999999999864
No 202
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=7.1e-43 Score=334.18 Aligned_cols=197 Identities=33% Similarity=0.446 Sum_probs=169.7
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---C-----
Q 010936 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---L----- 125 (497)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---~----- 125 (497)
++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+.. .
T Consensus 1 i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFG-----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEEC-----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHH
Confidence 367888882 467999999999999999999999999999999999999885 899999998732 1
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+|++||+.+..... .....+..+++.++++.+||.+..++.+ .+||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~ 144 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVA 144 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHH
Confidence 1346999999999999999999999875432 2233444567889999999987777654 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
||+||+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++ . ...+||++++|
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~-~~~~~d~i~~l 206 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP-E-VAKQADRVIEL 206 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-H-HHhhcCEEEeC
Confidence 99999999999999999999999999999999999987799999999996 3 45789999875
No 203
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.8e-43 Score=395.37 Aligned_cols=251 Identities=25% Similarity=0.301 Sum_probs=197.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|.+|+.++++.+++... ... .+.... . .........|+++|+++.|+. ..+++|+|+|+++++
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~-~~~--~~~~~~----~---~~~~~~~~~I~~~~vsf~y~~---~~~~vL~~isl~i~~ 504 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLL-EEE--EAPAAG----S---EPSPRLSGYVELRNITFGYSP---LEPPLIENFSLTLQP 504 (710)
T ss_pred HHHHHHHHHHHHHcCCCcccc-ccc--cccccc----c---ccCCCCCCeEEEEEEEEecCC---CCCCcccceeEEEcC
Confidence 567899999999986554321 000 000000 0 000111235999999999952 246799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+||||||||||+++|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++|||.++..
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-- 578 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-- 578 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCC--
Confidence 9999999999999999999999999996 8999999998532 24689999999999986 99999987521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..++ ++..||.+|+ ....||||||||++|||||+++|++||||||||+||+.+
T Consensus 579 ---~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 579 ---TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred ---CCCH----HHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 1222 224444554444 4567899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|++ .++|+|++||+++ ....||+|++|++|++++.|+.+++.+
T Consensus 651 e~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 651 EKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999976 4899999999963 456799999999999999999988764
No 204
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.6e-43 Score=395.07 Aligned_cols=245 Identities=30% Similarity=0.412 Sum_probs=196.4
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.++++|+.++++.+|...... ... . .+....|+++|+++.|+.. +++++|+|+||++++
T Consensus 446 ~~~~a~~ri~~~l~~~~~~~~~~--------------~~~--~-~~~~~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 506 (711)
T TIGR00958 446 QAVGASEKVFEYLDRKPNIPLTG--------------TLA--P-LNLEGLIEFQDVSFSYPNR--PDVPVLKGLTFTLHP 506 (711)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCC--------------CCC--C-CCCCCeEEEEEEEEECCCC--CCCccccCceEEEcC
Confidence 57889999999998765532100 000 0 0112259999999999531 236799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.++|+||||||||||+++|+|+++|. +|+|.+||++... .++.++||+|++.+|+. |++|||.++..
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-- 580 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-- 580 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC--
Confidence 9999999999999999999999999996 9999999998532 24679999999999986 99999998732
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..++ ++..||.+|+ ....||||||||++|||||+++|+|||||||||+||+.+
T Consensus 581 ---~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 581 ---DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred ---CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 1122 334555555554 4457898986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+ .. ..+++|+|++||+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 653 e~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 653 EQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999988 22 235899999999963 467799999999999999999988754
No 205
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4e-43 Score=393.11 Aligned_cols=247 Identities=26% Similarity=0.393 Sum_probs=199.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.++.+|+.++++.+++... . ... . ........|+++|++++|+. ..+++|+|+|+++++
T Consensus 430 ~~~~~~~ri~~il~~~~e~~~---~-~~~---------~---~~~~~~~~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~ 490 (694)
T TIGR03375 430 QAKTALQSLDELMQLPVERPE---G-TRF---------L---HRPRLQGEIEFRNVSFAYPG---QETPALDNVSLTIRP 490 (694)
T ss_pred HHHHHHHHHHHHHcCCCCCCC---C-CCC---------C---CCCCccceEEEEEEEEEeCC---CCccceeeeeEEECC
Confidence 467899999999986654211 0 000 0 00011225999999999942 245799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++|||.++..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-- 564 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-- 564 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC--
Confidence 9999999999999999999999999996 9999999998542 24679999999999987 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++..+ +++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 565 ---~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 565 ---YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred ---CCCHH----HHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 12222 2344444443 44567999987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 637 e~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 637 EERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999998864 799999999973 467899999999999999999988764
No 206
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.3e-42 Score=336.17 Aligned_cols=209 Identities=29% Similarity=0.470 Sum_probs=179.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|..+. +.+.+|+|+||++++|++++|+|+||||||||+++|+|+++|. +|+|+++|.+...
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHH
Confidence 68899999984211 1267999999999999999999999999999999999999885 9999999987521
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
..+.++|++|++.+++.+|+.||+.++..... .....+...++.++++.+||.+..++. ++.||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv 150 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRV 150 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHH
Confidence 13569999999999998999999998764321 123444556789999999998777664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++ + +.++||++++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999986 489999999996 3 5689999999999986
No 207
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-42 Score=345.00 Aligned_cols=221 Identities=26% Similarity=0.345 Sum_probs=182.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|++++. .+.+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 25 ALEVRNLNLFYG-----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred EEEEEEEEEEEC-----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 599999999993 457999999999999999999999999999999999998741 0248999999987531
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++. ||+||+.+...... .......++.++++++.+++.+...+.. +..+..|||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~q 175 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQ 175 (272)
T ss_pred CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHH
Confidence 13569999999998886 99999988754321 1122233456788889889864211111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
||+|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|+++..|++++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 68999999996 67889999999999999999998776
Q ss_pred H
Q 010936 282 A 282 (497)
Q Consensus 282 ~ 282 (497)
+
T Consensus 254 ~ 254 (272)
T PRK14236 254 L 254 (272)
T ss_pred H
Confidence 5
No 208
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=344.59 Aligned_cols=223 Identities=20% Similarity=0.323 Sum_probs=180.7
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC-
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~- 125 (497)
...|+++|+++.|. .+.+|+|+||++++|++++|+|+||||||||+++|+|+++ |..+.+|+|.++|.+...
T Consensus 22 ~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 22 KVVFDTQNLNLWYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred ceEEEEeeeEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 34699999999983 4569999999999999999999999999999999999986 211248999999987521
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
..+.++|++|++.+++. ||+||+.++..... .......++.+.+.++.+++.+...... +..+..|||||
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe 172 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQ 172 (271)
T ss_pred cccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHH
Confidence 13569999999988875 99999998754321 1122223445677777775532111111 22556899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.|++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~ 250 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDT 250 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 79999999996 678899999999999999999988
Q ss_pred hhH
Q 010936 280 SAA 282 (497)
Q Consensus 280 ~~~ 282 (497)
+++
T Consensus 251 ~~~ 253 (271)
T PRK14238 251 DKI 253 (271)
T ss_pred HHH
Confidence 765
No 209
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.4e-43 Score=394.44 Aligned_cols=246 Identities=23% Similarity=0.286 Sum_probs=197.9
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|.+|+.++++.+++..... .. .. .......|+++|+++.|+ .++++|+|+|+++++
T Consensus 440 ~~~~~~~ri~~~l~~~~e~~~~~----~~-------~~-----~~~~~~~I~~~~vsf~y~----~~~~iL~~isl~i~~ 499 (708)
T TIGR01193 440 AARVANNRLNEVYLVDSEFINKK----KR-------TE-----LNNLNGDIVINDVSYSYG----YGSNILSDISLTIKM 499 (708)
T ss_pred HHHHHHHHHHHHHcCCCcccccc----cc-------cC-----CCCCCCcEEEEEEEEEcC----CCCcceeceeEEECC
Confidence 57789999999997655432100 00 00 001122599999999994 236799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.+||+||||||||||+++|+|+++|+ +|+|++||.++.. .++.++||+|++.+|+. |++|||.++...
T Consensus 500 G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~- 574 (708)
T TIGR01193 500 NSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE- 574 (708)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC-
Confidence 9999999999999999999999999996 9999999998532 24679999999999987 999999986321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++..+ ++...||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+
T Consensus 575 ---~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 575 ---NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred ---CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence 12222 2344444443 34567899987 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 647 e~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 647 EKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999885 4799999999973 567899999999999999999988754
No 210
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=352.66 Aligned_cols=224 Identities=24% Similarity=0.328 Sum_probs=187.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK--- 124 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~--- 124 (497)
..|+++|+++.|.. +.+.+|+|+||+|++||++||+|||||||||||++|+|+..+. .+.+|+|.++|.++.
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 46999999999942 2356999999999999999999999999999999999998531 124899999999863
Q ss_pred ----CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 125 ----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 125 ----~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
..++.++||||++.+++ .|++||+.|+.... ... .....+.+.++++.++|.+..++.++. ++..|||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGq 230 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQ 230 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHH
Confidence 12357999999999886 69999999875332 122 222234567888888886554455543 677899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++ ..+.++||+|++|++|++++.|++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999876 69999999995 678889999999999999999999
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 309 ~~l~ 312 (329)
T PRK14257 309 KTIF 312 (329)
T ss_pred HHHh
Confidence 8864
No 211
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.3e-42 Score=340.61 Aligned_cols=216 Identities=22% Similarity=0.303 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC-CceeEEEECCEecCC---C
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHKTKL---S 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~---~ 126 (497)
.|+++|+++.| ++.+|+|+||++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 58999999988 1469999999999999999999999999999999999998710 138999999987532 1
Q ss_pred cCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCCHHHHH
Q 010936 127 FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 ~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerq 201 (497)
.+.++|++|++. +.+.+|+.+++.+.+... .... ..+.+.++++.++|.+ ..++ .+..|||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~q 147 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQ 147 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHH
Confidence 246999999974 456689999987754322 1111 2356888999999975 2344 44679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|++++.|+++
T Consensus 148 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 226 (254)
T PRK10418 148 RMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVE 226 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999764 89999999996 5788899999999999999999887
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
++.
T Consensus 227 ~~~ 229 (254)
T PRK10418 227 TLF 229 (254)
T ss_pred HHh
Confidence 653
No 212
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-42 Score=339.62 Aligned_cols=217 Identities=26% Similarity=0.347 Sum_probs=180.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYG-----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 489999999993 4679999999999999999999999999999999999986 211248999999987421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCCH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGISG 197 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|++.+++ .||+||+.++..... ........+.+.++++.+++.. ..++ .+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~ 150 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAFSG 150 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhCCH
Confidence 1346999999998886 699999988654321 1112233456788899999852 2333 4568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||++ .++.++||++++|++|+++..|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 68999999996 5788999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+.+++
T Consensus 229 ~~~~~ 233 (251)
T PRK14251 229 PTEEM 233 (251)
T ss_pred CHHHH
Confidence 88765
No 213
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.8e-43 Score=342.78 Aligned_cols=212 Identities=27% Similarity=0.439 Sum_probs=170.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHH
Confidence 468899998832 2356999999999999999999999999999999999999885 8999999987421 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (497)
++.++|++|++.+++ .||.||+.+.... ....... ..+.++++.+ ++....+. ++.+|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~ 143 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQ 143 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHH
Confidence 356999999988875 6999999875321 1111111 1123344444 33333333 456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ .++ ..||++++|++|++++.|++
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~~~~ 220 (237)
T cd03252 144 RQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRL-STV-KNADRIIVMEKGRIVEQGSH 220 (237)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999964 89999999997 455 56999999999999999998
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 221 ~~~~ 224 (237)
T cd03252 221 DELL 224 (237)
T ss_pred HHHH
Confidence 7754
No 214
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-42 Score=345.91 Aligned_cols=221 Identities=24% Similarity=0.351 Sum_probs=182.4
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL 125 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~ 125 (497)
....|+++|+++.|. .+.+|+|+||+|++||+++|+|||||||||||++|+|+.+ |..+.+|+|.++|.+...
T Consensus 36 ~~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 344689999999983 3569999999999999999999999999999999999864 310138999999987421
Q ss_pred -------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCcccCC
Q 010936 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ----DCADTVIGNWHLRG 194 (497)
Q Consensus 126 -------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~ 194 (497)
.++.++|++|++.+++. ||.||+.+...... ..+....++.+.++++.+|+. +..++ .+..
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~ 182 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDK-----NALG 182 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhC-----Chhh
Confidence 13569999999988885 99999998754321 112233345677888888874 23333 4568
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|++|+++
T Consensus 183 LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLV 260 (286)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 58999999996 6788999999999999999
Q ss_pred EEeCchhHH
Q 010936 275 YFGETSAAF 283 (497)
Q Consensus 275 ~~G~~~~~~ 283 (497)
..|+++++.
T Consensus 261 ~~g~~~~~~ 269 (286)
T PRK14275 261 EHAPTAQLF 269 (286)
T ss_pred EeCCHHHHH
Confidence 999887653
No 215
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=367.82 Aligned_cols=245 Identities=27% Similarity=0.357 Sum_probs=203.4
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+..+|+.|+-++.+++|+..- + ..+...... .++++|+|++|+. +..++|+|+||++++
T Consensus 305 q~~~Sa~Rl~~i~~q~~e~~~---------~--------~~~~~~~~~-~l~~~~vsF~y~~---~~~~~L~~~~l~l~~ 363 (573)
T COG4987 305 QVIASARRLNDILDQKPEVTF---------P--------DEQTATTGQ-ALELRNVSFTYPG---QQTKALKNFNLTLAQ 363 (573)
T ss_pred HHHHHHHHHhhhccCCcccCC---------C--------ccccCCccc-eeeeccceeecCC---CccchhhccceeecC
Confidence 456889999999988877531 0 001111112 6999999999963 345799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||-+||+|+||||||||+.+|+|.++|. +|+|.+||.++... ++.+++++|...+|.+ |+++||.++..-
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~- 438 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD- 438 (573)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC-
Confidence 9999999999999999999999999996 99999999875322 3468999999999988 999999987432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.+. +.+.++++.+||+ +..||.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+
T Consensus 439 ----AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~T 509 (573)
T COG4987 439 ----ASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509 (573)
T ss_pred ----CCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhh
Confidence 222 3466677777774 356778887 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
..++++.|.+..+ |+|+|++||+.. -.+.||+|++|++|++++.|..+++..
T Consensus 510 E~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 510 ERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 9999999988655 899999999974 367899999999999999999988754
No 216
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.7e-42 Score=338.20 Aligned_cols=218 Identities=23% Similarity=0.310 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC--CCCCCCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~--~~~~~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|. ++.+|+||||++++||+++|+|+||||||||+++|+|+ ++|. +|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEeC-----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCCh
Confidence 599999999983 35799999999999999999999999999999999998 3554 8999999987532
Q ss_pred --CcC-cEEEEcCCCCCCCCCCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 126 --SFG-TAAYVTQDDNLIGTLTVRETISYSARLRLP----DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 --~~~-~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
..+ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+|+. ...++.++ .+|||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSg 154 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSG 154 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCH
Confidence 112 478999999999999999999876432110 0111223345678899999997 34555432 25999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~ 276 (497)
||||||+||+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ ..+..+ ||++++|++|++++.
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987799999999996 556666 899999999999999
Q ss_pred eCchh
Q 010936 277 GETSA 281 (497)
Q Consensus 277 G~~~~ 281 (497)
|+++.
T Consensus 234 ~~~~~ 238 (252)
T CHL00131 234 GDAEL 238 (252)
T ss_pred cChhh
Confidence 98874
No 217
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=341.56 Aligned_cols=222 Identities=23% Similarity=0.280 Sum_probs=184.6
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC-
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~- 125 (497)
+..+.++++++.| +++.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|+++|.+...
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 6 PIVMDCKLDKIFY-----GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred CceEEEEeEEEEe-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 3468899999988 34679999999999999999999999999999999999997611 148999999987521
Q ss_pred ------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH
Q 010936 126 ------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 199 (497)
.++.++|++|++.++ .+|+.||+.++..... . ..+....+.++++.++|.+..+...+ .+++.|||||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~ 154 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQ 154 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHH
Confidence 134699999999888 4899999998765421 1 12334568889999998654322222 2567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee--------CC
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS--------GG 271 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~--------~G 271 (497)
+||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|+ +|
T Consensus 155 ~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G 232 (261)
T PRK14263 155 QQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTG 232 (261)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCc
Confidence 9999999999999999999999999999999999999999964 79999999996 57889999999996 89
Q ss_pred eEEEEeCchhHH
Q 010936 272 KTVYFGETSAAF 283 (497)
Q Consensus 272 ~iv~~G~~~~~~ 283 (497)
++++.|+.+++.
T Consensus 233 ~i~~~g~~~~~~ 244 (261)
T PRK14263 233 YLVEMGPTAQIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999987653
No 218
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.1e-42 Score=339.49 Aligned_cols=217 Identities=29% Similarity=0.347 Sum_probs=180.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe-----cCC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-----TKL 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~-----~~~ 125 (497)
.|+++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+ ...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSYG-----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEeC-----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEeccccccccccc
Confidence 589999999993 356999999999999999999999999999999999999885 8999999875 321
Q ss_pred ---------CcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccC
Q 010936 126 ---------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLR 193 (497)
Q Consensus 126 ---------~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 193 (497)
..+.++|++|++. +++.+|+.+|+.+..... . ..........+.++++.+|+.+ ..++. +.
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~ 147 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL-----PR 147 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC-----ch
Confidence 1235899999974 456679999997643211 0 0111233467889999999963 55554 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++ .++..+||++++|++|+
T Consensus 148 ~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~ 226 (253)
T TIGR02323 148 AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGR 226 (253)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999998764 89999999995 67888999999999999
Q ss_pred EEEEeCchhHH
Q 010936 273 TVYFGETSAAF 283 (497)
Q Consensus 273 iv~~G~~~~~~ 283 (497)
+++.|+++++.
T Consensus 227 i~~~~~~~~~~ 237 (253)
T TIGR02323 227 VVESGLTDQVL 237 (253)
T ss_pred EEEECCHHHHh
Confidence 99999877653
No 219
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.4e-42 Score=373.02 Aligned_cols=219 Identities=25% Similarity=0.361 Sum_probs=186.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+++|+++.| +++.+|+||||++++|++++|+||||||||||+++|+|+++|. ..+|+|.++|++...
T Consensus 2 l~i~~l~~~~-----~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTF-----GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEe-----CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 7899999999 3467999999999999999999999999999999999998761 138999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCCHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv 203 (497)
.++.++||+|++.+++.+||.||+.++....... .....+..++++++++.+||.+.. ++. +.+|||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv 150 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLV 150 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHH
Confidence 1246999999999999999999998875332110 122334456788999999997654 343 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||+|++|++|+++..|+++++
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999999988899999999995 678899999999999999999987653
No 220
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.1e-42 Score=337.01 Aligned_cols=204 Identities=28% Similarity=0.332 Sum_probs=171.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-CCceeEEEECCEecCC---CcCcEEEEcCCCC--CCCCCC
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTKL---SFGTAAYVTQDDN--LIGTLT 144 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~--l~~~lT 144 (497)
+|+|+||++++|++++|+||||||||||+++|+|+++|. ...+|+|.++|++... ..+.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999999871 0028999999987532 1246999999984 567789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010936 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEP 221 (497)
+.|++.+..... .........++.++++.++|.+ ..++ .+..|||||||||+|||+|+.+|++||||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998765432 1112334566889999999973 3444 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 222 TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|+++..|+++++.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 89999999996 6788999999999999999999887653
No 221
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.4e-42 Score=378.62 Aligned_cols=246 Identities=28% Similarity=0.419 Sum_probs=196.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.++.... . ... ......++++|+++.|+. +++++|+|+|+++++
T Consensus 286 ~~~~~~~ri~~~l~~~~~~~~-------~-------~~~-----~~~~~~i~~~~v~~~y~~---~~~~~l~~~~~~i~~ 343 (544)
T TIGR01842 286 GARQAYKRLNELLANYPSRDP-------A-------MPL-----PEPEGHLSVENVTIVPPG---GKKPTLRGISFRLQA 343 (544)
T ss_pred HHHHHHHHHHHHHhCCccccC-------C-------CCC-----CCCCCeEEEEEEEEEcCC---CCccccccceEEEcC
Confidence 578999999999976544210 0 000 011235999999999942 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+||||||||||+++|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 417 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE-- 417 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999987532 24579999999999987 99999986431
Q ss_pred CCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 157 LPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 157 ~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
..+.++.. ...++.++. +++..|+.+|+ ....||||||||++|||||+++|++|+|||||+|||+.++.
T Consensus 418 ---~~~~~~~~~~~~~~~~~~~i~~--l~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 418 ---NADPEKIIEAAKLAGVHELILR--LPDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred ---CCCHHHHHHHHHHhChHHHHHh--CccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence 12222211 112334443 34456788876 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
.+.+.|+++..+|+|+|+++|++. ..+.||+|++|++|++++.|+.+++.
T Consensus 492 ~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999998766899999999963 46789999999999999999987764
No 222
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-42 Score=343.68 Aligned_cols=223 Identities=24% Similarity=0.294 Sum_probs=181.7
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL 125 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~ 125 (497)
....|+++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++...
T Consensus 17 ~~~~l~~~nl~~~~~-----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 17 DHSVFEVEGVKVFYG-----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CCceEEEeeEEEEeC-----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 345799999999993 457999999999999999999999999999999999998631 1248999999987521
Q ss_pred -------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 126 -------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 -------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
.++.++|++|++.+++. ||.||+.+....+ ... ...++.+.+.++.+++........ +.++..||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgG 165 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKL-KEKGTALSGG 165 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHh-cCCcccCCHH
Confidence 13579999999988875 9999998875432 111 122344667788888742211111 2255689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee---------
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS--------- 269 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~--------- 269 (497)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ .++.++||++++|+
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999965 68999999996 68899999999997
Q ss_pred CCeEEEEeCchhHH
Q 010936 270 GGKTVYFGETSAAF 283 (497)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (497)
+|++++.|+++++.
T Consensus 244 ~G~~~~~g~~~~~~ 257 (274)
T PRK14265 244 RGKLVEFSPTEQMF 257 (274)
T ss_pred CceEEEeCCHHHHH
Confidence 89999999998764
No 223
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=6.1e-42 Score=341.47 Aligned_cols=222 Identities=25% Similarity=0.291 Sum_probs=185.5
Q ss_pred EEEEEeEEEEEEcc----CCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-
Q 010936 51 RLTWKDLTVMVTLS----NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~- 125 (497)
.|+++|+++.|... ...++.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccc
Confidence 48899999998420 001367999999999999999999999999999999999999885 9999999986421
Q ss_pred -------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 010936 126 -------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 195 (497)
..+.++|++|++ .+++..|+.|++.+...... .....+...+++++++.+|+. +..++. +..|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR-----PPQL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccC
Confidence 135699999997 46678899999977543211 123344456788999999996 455554 4579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ .++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999875 89999999996 6788899999999999999
Q ss_pred EEeCchhHH
Q 010936 275 YFGETSAAF 283 (497)
Q Consensus 275 ~~G~~~~~~ 283 (497)
+.|+++++.
T Consensus 232 ~~g~~~~~~ 240 (268)
T PRK10419 232 ETQPVGDKL 240 (268)
T ss_pred eeCChhhcc
Confidence 999887753
No 224
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=372.41 Aligned_cols=214 Identities=21% Similarity=0.271 Sum_probs=183.8
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------CcC
Q 010936 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------SFG 128 (497)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------~~~ 128 (497)
+|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|++... ..+
T Consensus 2 ~nl~~~~-----~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSF-----PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEe-----CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhC
Confidence 6788888 3467999999999999999999999999999999999999886 8999999987532 124
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.++............+..++++++++.+|+.+..++.+ .+|||||||||+||+|
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKA 148 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHH
Confidence 69999999989999999999987642110101123344567889999999987777654 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ +++..+||++++|++|+++..|+++++
T Consensus 149 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999987899999999996 678899999999999999999987664
No 225
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=379.41 Aligned_cols=223 Identities=27% Similarity=0.337 Sum_probs=189.4
Q ss_pred eEEEEEeEEEEEEccCC------cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec
Q 010936 50 ARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 123 (497)
..|+++||++.|..+.+ ..+.+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|+++|.++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEEC
Confidence 36999999999942100 1246999999999999999999999999999999999999885 89999999875
Q ss_pred CC--------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 010936 124 KL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHL 192 (497)
Q Consensus 124 ~~--------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 192 (497)
.. .++.++||+|++ .+++.+||.||+.+...... .....+..+++.++++.+||. +..++ ++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----YP 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 21 134699999997 58899999999998654321 112334456788999999996 45565 45
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
++|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||++|||+ ..+..+||+|++|++|
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G 540 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLG 540 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999999875 89999999995 6889999999999999
Q ss_pred eEEEEeCchhHH
Q 010936 272 KTVYFGETSAAF 283 (497)
Q Consensus 272 ~iv~~G~~~~~~ 283 (497)
++++.|+++++.
T Consensus 541 ~iv~~g~~~~i~ 552 (623)
T PRK10261 541 QIVEIGPRRAVF 552 (623)
T ss_pred EEEEecCHHHHh
Confidence 999999988864
No 226
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-42 Score=343.43 Aligned_cols=216 Identities=24% Similarity=0.364 Sum_probs=180.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~-- 125 (497)
..|+++|+++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. +.+|+|.++|.+...
T Consensus 38 ~~l~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 38 TVIEARDLNVFYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred ceEEEEEEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 3589999999993 4679999999999999999999999999999999999986310 148999999987421
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCCC
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGIS 196 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LS 196 (497)
..+.++|++|++.+++. ||.||+.+..... .... ....+++++++.+||.+ ..++ ++.+||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LS 182 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDEVKDQLDS-----SGLDLS 182 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCchhHHHHhC-----CcccCC
Confidence 13569999999988886 9999999875432 1122 33456888999999853 2333 456899
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE-EeeCCeEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY-LLSGGKTVY 275 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~-~L~~G~iv~ 275 (497)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|||++||++ .++..+||+++ +|++|+++.
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 8999999996 67888999975 579999999
Q ss_pred EeCchhH
Q 010936 276 FGETSAA 282 (497)
Q Consensus 276 ~G~~~~~ 282 (497)
.|+++++
T Consensus 261 ~g~~~~~ 267 (285)
T PRK14254 261 FDDTDKI 267 (285)
T ss_pred eCCHHHH
Confidence 9987764
No 227
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.9e-42 Score=326.19 Aligned_cols=187 Identities=56% Similarity=0.865 Sum_probs=163.5
Q ss_pred EEEEEeEEEEEEccC-CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECCEecCC--
Q 010936 51 RLTWKDLTVMVTLSN-GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~-- 125 (497)
.|+++|+++.|.... ...+.+|+|+||++++|++++|+||||||||||+++|+|++ +|. +|+|.++|++...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHh
Confidence 589999999995210 01257999999999999999999999999999999999999 775 8999999997542
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.++|++|++.+++.+|++||+.+.... . .||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------~----------------------~LS~G~~qrv~l 122 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL---------------R----------------------GLSGGERKRVSI 122 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh---------------c----------------------cCCHHHHHHHHH
Confidence 235699999999999999999999765311 0 499999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||+.+|+++||||||+|||+.++..+.+.|++++++|+|+|++||++..++.++||++++|++|++++.|
T Consensus 123 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999997779999999999744688899999999999998754
No 228
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-42 Score=338.31 Aligned_cols=213 Identities=31% Similarity=0.428 Sum_probs=172.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|.. ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPG---DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCC---CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHH
Confidence 468999999831 1236999999999999999999999999999999999999885 9999999987431 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (497)
.+.++|++|++.+++ .||+||+.+.... ....... ..+.++++.+ ++.+..+. .+..|||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~G~ 143 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSGGQ 143 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCHHH
Confidence 356999999998887 5999999876421 1111111 1234455555 45444443 456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ |.|||++||++ .++.. ||++++|++|+++..|++
T Consensus 144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~v~~l~~G~i~~~~~~ 220 (234)
T cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRL-STIEN-ADRIVVLEDGKIVERGTH 220 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHhh-CCEEEEecCCeEeeeCCH
Confidence 9999999999999999999999999999999999999999964 89999999996 46654 999999999999999988
Q ss_pred hhHHH
Q 010936 280 SAAFE 284 (497)
Q Consensus 280 ~~~~~ 284 (497)
+++..
T Consensus 221 ~~~~~ 225 (234)
T cd03251 221 EELLA 225 (234)
T ss_pred HHHHH
Confidence 76543
No 229
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-42 Score=336.60 Aligned_cols=222 Identities=22% Similarity=0.307 Sum_probs=183.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~-- 125 (497)
+.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|.++..
T Consensus 2 ~~l~~~~v~~~~-----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 2 YRIEVENLNTYF-----DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred cEEEEEeEEEEe-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 358899999998 34679999999999999999999999999999999999864 211248999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
..+.++|++|++.+++. |+.||+.+...... .......++++.++++.+|+.+...... +..+..||||||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~ 152 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQ 152 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHH
Confidence 13569999999998885 99999988653321 1122334567888999999854322112 234568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++ .++...||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTD 230 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999999965 79999999996 6889999999999999999999987
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 231 ~~ 232 (250)
T PRK14266 231 QI 232 (250)
T ss_pred HH
Confidence 75
No 230
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.6e-43 Score=391.92 Aligned_cols=251 Identities=29% Similarity=0.391 Sum_probs=209.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.|..||.+|+++++.+|..+..- +. .. ..+...-.|+++||++.|+.+ ++.+||+|+|+++++
T Consensus 953 ka~~Aa~~iF~i~dr~~~i~~~~--------~~---~~----~~~~~~G~I~~~~V~F~YPsR--P~~~Il~~l~l~i~~ 1015 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPTIDPDS--------TS---GG----KLPNVKGDIEFRNVSFAYPTR--PDVPVLNNLSLSIRA 1015 (1228)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCC--------CC---CC----ccccceeEEEEeeeEeeCCCC--CCchhhcCCcEEecC
Confidence 47889999999999999654211 00 00 011223359999999999854 568899999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.+||+|||||||||.+.+|-.+++|. +|.|.+||.+++. .++++|.|.|+|.||.. |++|||.|+..
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~-- 1089 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE-- 1089 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC--
Confidence 9999999999999999999999999996 9999999998643 25789999999999987 99999999921
Q ss_pred CCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 157 LPDKMPWSEKRT-----LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 157 ~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
..+..+..+ .+.+.+ .+|++.+||.||+ +..+||||||||++||||+++||+||||||.||+||+++.+
T Consensus 1090 ---~vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSEr 1163 (1228)
T KOG0055|consen 1090 ---EVSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESER 1163 (1228)
T ss_pred ---CCCHHHHHHHHHHhhhHHHH--hcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHH
Confidence 133333322 233333 4789999999997 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.+.+.|.+.. .|+|.|++.|+++ ..+.||.|.++++|+++++|+.++++.
T Consensus 1164 vVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1164 VVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999975 4899999999975 467899999999999999999998875
No 231
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-42 Score=369.82 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.| +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTF-----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEE-----CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHH
Confidence 58999999999 3467999999999999999999999999999999999999885 8999999987531
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.++.++|++|++.+++.+||.||+.++............+.++++.++++.+||.+..++.+ .+|||||||||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~ 150 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVE 150 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHH
Confidence 13569999999999999999999998642111111223444567889999999987666644 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|+++..++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999987899999999996 678899999999999999877653
No 232
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.3e-42 Score=378.92 Aligned_cols=245 Identities=28% Similarity=0.405 Sum_probs=195.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++..+++|+.++++.++..+... . ... . ......++++|+++.|+ +.+.+|+|+|+++++
T Consensus 301 ~~~~~~~~i~~l~~~~~~~~~~~-----~--------~~~--~-~~~~~~I~~~~vsf~y~----~~~~iL~~inl~i~~ 360 (588)
T PRK13657 301 MAAPKLEEFFEVEDAVPDVRDPP-----G--------AID--L-GRVKGAVEFDDVSFSYD----NSRQGVEDVSFEAKP 360 (588)
T ss_pred HHHHHHHHHHHHhCCCcccCCCC-----C--------CCC--c-CCCCCeEEEEEEEEEeC----CCCceecceeEEECC
Confidence 46678888888887544321100 0 000 0 01122599999999994 225699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+|+||||||||+|+|+|+++|. +|+|.+||.+... .++.++||||++.+|+. |++||+.++..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-- 434 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-- 434 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999996 9999999997542 24679999999999986 99999988631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++.++ +++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 435 ---~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t 506 (588)
T PRK13657 435 ---DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET 506 (588)
T ss_pred ---CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 12222 2334444444 34567888886 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++.+ ++|+|++||++ ...+.||+|++|++|+++..|+.+++.
T Consensus 507 ~~~i~~~l~~~~~-~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 507 EAKVKAALDELMK-GRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHHHhc-CCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999998754 79999999996 356889999999999999999988764
No 233
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.6e-42 Score=339.20 Aligned_cols=214 Identities=29% Similarity=0.405 Sum_probs=170.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|... +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHH
Confidence 4689999988421 1356999999999999999999999999999999999999885 9999999987431 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRT-----LVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (497)
.+.++|++|++.+++ .||+||+.+..... ....... .+.++++.+ ++....++ .+..|||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~ 144 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQLSGGQ 144 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc-----CCccCCHHH
Confidence 246999999998886 59999998753211 1111111 112222222 33222222 457899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||++ +++. .||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~-~~~~-~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL-STIR-NADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHh-hCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999987 789999999996 4565 8999999999999999987
Q ss_pred hhHHH
Q 010936 280 SAAFE 284 (497)
Q Consensus 280 ~~~~~ 284 (497)
+++..
T Consensus 222 ~~~~~ 226 (238)
T cd03249 222 DELMA 226 (238)
T ss_pred HHHhh
Confidence 76543
No 234
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.3e-42 Score=376.63 Aligned_cols=245 Identities=29% Similarity=0.409 Sum_probs=199.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++..+.+|+.++++.++..+... .+ . .+..-.++++|++++|+. .++.+|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~~----~~-------------~-~~~~~~i~~~~v~f~y~~---~~~~il~~inl~i~~ 357 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDTGT----RA-------------I-ERARGDVEFRNVTFRYPG---RDRPALDSISLVIEP 357 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC----CC-------------C-CCCCCeEEEEEEEEEcCC---CCCccccCeeEEecC
Confidence 56789999999997655532100 00 0 011124999999999942 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.++|+|+||||||||+++|+|+++|. +|+|.+||.+... .++.++||||++.+|+. |++|||.++..
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-- 431 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT-- 431 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999996 8999999987532 23579999999999987 99999987631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
...+. +.+.++++.+|+ ++..||.+|+ ....||||||||++||||++++|++++||||||+||+.+
T Consensus 432 --~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~ 504 (571)
T TIGR02203 432 --EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGE-NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504 (571)
T ss_pred --CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11222 335555665554 4557888987 467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++. +++|+|++||++ .....||+|++|++|+++..|+.+++.
T Consensus 505 ~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 505 ERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999885 469999999996 467889999999999999999988764
No 235
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-42 Score=324.68 Aligned_cols=186 Identities=48% Similarity=0.808 Sum_probs=161.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEecC-CCc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKTK-LSF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~-~~~ 127 (497)
.|+++|+++.|..+. .++.+|+|+||++++|++++|+||||||||||+++|+|+.. | .+|+|.++|++.. ...
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---cceEEEECCEehHHHhh
Confidence 588999999994211 12579999999999999999999999999999999999863 4 4899999998753 223
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+.... . .|||||||||+|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~----------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL---------------R----------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH---------------h----------------------cCCHHHhHHHHHHH
Confidence 5699999999999999999999875310 0 49999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC-CeEEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTVYFG 277 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~-G~iv~~G 277 (497)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877899999999974347889999999998 9998865
No 236
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-42 Score=341.33 Aligned_cols=218 Identities=26% Similarity=0.376 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC--cC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--FG 128 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--~~ 128 (497)
.|+++|+++.|. +++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+.... .+
T Consensus 6 ~l~~~~l~~~~~----~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWR----NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEec----CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccc
Confidence 589999999994 2357999999999999999999999999999999999999885 89999999875321 23
Q ss_pred cEEEEcCCCCCC--CCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 129 TAAYVTQDDNLI--GTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 129 ~i~yv~Q~~~l~--~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++|++|++.+. ...++++++.++...... ...........+.++++.+||.+..++.+ ..||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~l 153 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVFL 153 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHH
Confidence 599999997652 234789988754211000 00111223456788899999988777755 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+++++ +|++++.|+++++
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999987799999999996 6788999999877 8999999988765
No 237
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-42 Score=339.68 Aligned_cols=220 Identities=24% Similarity=0.340 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.|+++|+++.| +.+.+|+|+||++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 10 ~l~i~~v~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYY-----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEE-----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 68999999998 3457999999999999999999999999999999999997631 1248999999987521
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++. ||.||+.+..... ... ....+.+.++++.+++.+..+... +..+..|||||||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~q 158 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQ 158 (264)
T ss_pred ChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcccCCHHHHH
Confidence 13469999999988884 9999998875432 111 123345667788888743211111 2245689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee---------CCe
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS---------GGK 272 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~---------~G~ 272 (497)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|+ +|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999976 58999999996 68999999999998 899
Q ss_pred EEEEeCchhHH
Q 010936 273 TVYFGETSAAF 283 (497)
Q Consensus 273 iv~~G~~~~~~ 283 (497)
+++.|+++++.
T Consensus 237 i~~~~~~~~~~ 247 (264)
T PRK14243 237 LVEFDRTEKIF 247 (264)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
No 238
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-43 Score=319.06 Aligned_cols=217 Identities=29% Similarity=0.405 Sum_probs=193.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++||.+.| +...+|++||++.++|+++.|||.|||||||+|+||.-+.+|. .|.|.+||+.+..
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCC
Confidence 48899999999 5688999999999999999999999999999999999999986 8999999985311
Q ss_pred -------------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 010936 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (497)
Q Consensus 126 -------------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (497)
.+.+.++|+|..+++++|||.||+.-+..--+ +.++.+..++++.+|..+||.+..|. ||
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP 150 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA-----YP 150 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----Cc
Confidence 01246899999999999999999987533211 45677888899999999999887764 77
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.. ..+.+...+|+.|.+|.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGK 229 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecce
Confidence 78999999999999999999999999999999999999999999999999999999999995 68889999999999999
Q ss_pred EEEEeCchhHH
Q 010936 273 TVYFGETSAAF 283 (497)
Q Consensus 273 iv~~G~~~~~~ 283 (497)
+-+.|+|++++
T Consensus 230 iEE~G~P~qvf 240 (256)
T COG4598 230 IEEEGPPEQVF 240 (256)
T ss_pred ecccCChHHHh
Confidence 99999999864
No 239
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.4e-42 Score=329.04 Aligned_cols=201 Identities=23% Similarity=0.340 Sum_probs=175.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--Cc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SF 127 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~ 127 (497)
..++++|+++.+ +++.+|+++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ..
T Consensus 10 ~~l~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSR-----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEec-----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhh
Confidence 368999999998 3457999999999999999999999999999999999999886 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+|+.||+.+....+ .. ...+.+.++++.++|.+..++.+ ..|||||||||+|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lar 150 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALAR 150 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHH
Confidence 45899999999999999999998875432 11 12345678899999987777655 479999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+|+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999988899999999996 689999999999863
No 240
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.8e-42 Score=332.59 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=171.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|.. ..+.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+... .
T Consensus 3 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 76 (220)
T cd03245 3 IEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76 (220)
T ss_pred EEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHH
Confidence 789999999831 1256999999999999999999999999999999999999885 8999999987421 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CcccCCCCHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG------NWHLRGISGGER 200 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGer 200 (497)
.+.++|++|++.+++ .||.||+.+.... .. ...+.++++.+++.+..++... ...+..||||||
T Consensus 77 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 77 RRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred HhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 246999999998887 5999999775321 11 2345677888888765554321 113468999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||++ ..+ ++||++++|++|++++.|
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRP-SLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCH-HHH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999998765 8999999996 444 799999999999998654
No 241
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=337.31 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=181.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC------EecC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG------HKTK 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G------~~~~ 124 (497)
.+.++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++| .+..
T Consensus 10 ~i~~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 10 VFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred heeeeeEEEec-----CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCcccc
Confidence 48999999999 4577999999999999999999999999999999999999885 65555554 4432
Q ss_pred C-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCcccCCC
Q 010936 125 L-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----CADTVIGNWHLRGI 195 (497)
Q Consensus 125 ~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~L 195 (497)
. .+..++|++|++.+++.+||+||+.+...... .....+..+.+.++++.+++.+ ..++ .+..|
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~L 154 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNS-----PASQL 154 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcC-----CcccC
Confidence 1 13568999999999999999999998754321 1123344567888999999964 2333 45679
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
|||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++++ +.|||++||++ ..+..+||++++|++|+++.
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVE 232 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 69999999995 67889999999999999999
Q ss_pred EeCchhHH
Q 010936 276 FGETSAAF 283 (497)
Q Consensus 276 ~G~~~~~~ 283 (497)
.|+.+++.
T Consensus 233 ~g~~~~~~ 240 (257)
T PRK14246 233 WGSSNEIF 240 (257)
T ss_pred ECCHHHHH
Confidence 99887654
No 242
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-42 Score=378.22 Aligned_cols=221 Identities=26% Similarity=0.328 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-------
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT------- 123 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~------- 123 (497)
.|+++||++.|.... +..++|+||||++++||++||+||||||||||+++|+|+++|. +|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccc
Confidence 599999999994211 1357999999999999999999999999999999999999885 89999998632
Q ss_pred ------C------CCcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---ccccc
Q 010936 124 ------K------LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD---CADTV 186 (497)
Q Consensus 124 ------~------~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ 186 (497)
. ...+.+|||+|++ .+++.+||.||+.++..... ..+..+.++++.++++.+||.+ ..++
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~- 164 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSR- 164 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhC-
Confidence 0 0123699999997 68888999999999865421 2344555678899999999964 2444
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeE
Q 010936 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 187 vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v 265 (497)
++.+|||||||||+||+||+.+|+||||||||++||+.++.+++++|++++++ |+|||++||++ ..+.++||+|
T Consensus 165 ----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri 239 (623)
T PRK10261 165 ----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRV 239 (623)
T ss_pred ----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEE
Confidence 55689999999999999999999999999999999999999999999999865 99999999995 6788999999
Q ss_pred EEeeCCeEEEEeCchhHH
Q 010936 266 YLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 266 ~~L~~G~iv~~G~~~~~~ 283 (497)
++|++|++++.|+++++.
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 999999999999887764
No 243
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=7.4e-42 Score=337.10 Aligned_cols=198 Identities=28% Similarity=0.401 Sum_probs=171.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV 145 (497)
+|+|+||++++|++++|+||||||||||+++|+|+.++ +|+|.++|++... ..+.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999843 7999999987532 12458999999888888999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCEEEE
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-------RPRLLFL 218 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~-------~p~lllL 218 (497)
+||+.+.... .....+..++++++++.+||.+..++.+ ..||||||||++||+||+. +|++|||
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999886422 1122334567889999999987766644 5799999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
||||+|||+.++..+.+.|++++++|.|||++||++ .++..+||++++|++|++++.|+.+++
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999987799999999995 578999999999999999999987765
No 244
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.5e-42 Score=358.24 Aligned_cols=216 Identities=30% Similarity=0.412 Sum_probs=195.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--- 126 (497)
..++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|.++|+ +|+|.++|++....
T Consensus 7 ~ll~~~~i~K~F-----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEc-----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHH
Confidence 358999999999 5678999999999999999999999999999999999999996 99999999975321
Q ss_pred ---cCcEEEEcCCCCCCCCCCHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH
Q 010936 127 ---FGTAAYVTQDDNLIGTLTVRETISYSARLRL-PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 127 ---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 202 (497)
...|+.|+|+..+.|+|||.||+.++..... ..-+++....+++.++|+.+|+....++.++ +||+||||.
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~ 153 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQM 153 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHH
Confidence 2468999999999999999999998866543 2335677888899999999999655788776 599999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|.|||||..+++|||||||||+|+......+.+.+++|+++|.+||++||.+ +|++++||||.+|+||+.+..++.
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999999999999999999999995 799999999999999999988873
No 245
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-41 Score=334.71 Aligned_cols=215 Identities=22% Similarity=0.309 Sum_probs=184.5
Q ss_pred eEEEEEeEEEEEEcc---------------CCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee
Q 010936 50 ARLTWKDLTVMVTLS---------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG 114 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~---------------~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G 114 (497)
+.|+++||++.|+.. ....+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 568999999988762 113457999999999999999999999999999999999999886 89
Q ss_pred EEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 010936 115 TILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (497)
Q Consensus 115 ~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (497)
+|.++|. +++++|+..+.+.+||.||+.+..... .....+....++.+++.++|.+..++.+ ..
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KK 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----cc
Confidence 9999985 357778877888899999998765432 2234444556778888889987776644 57
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||+|||+||+||+.+|++|||||||+|||+.++..+++.|.++++.|.|||++||++ .++.++||++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999977799999999995 6788999999999999999
Q ss_pred EEeCchhHHH
Q 010936 275 YFGETSAAFE 284 (497)
Q Consensus 275 ~~G~~~~~~~ 284 (497)
..|+.+++.+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999887654
No 246
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.9e-42 Score=370.29 Aligned_cols=217 Identities=25% Similarity=0.301 Sum_probs=184.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECC---------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNG--------- 120 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G--------- 120 (497)
|+++|+++.| +++.+|+|+||++++|++++|+|||||||||||++|+|++ +|+ +|+|.++|
T Consensus 1 l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF-----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE-----CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccc
Confidence 4689999999 3467999999999999999999999999999999999997 564 89999972
Q ss_pred --------------Eec--------C-------CCcCcEEEEcCC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHH
Q 010936 121 --------------HKT--------K-------LSFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170 (497)
Q Consensus 121 --------------~~~--------~-------~~~~~i~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v 170 (497)
.++ . ..++.++|++|+ +.+++.+||+||+.+..... ..+..+.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 111 0 012458999997 67888899999999875432 23344556778
Q ss_pred HHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Q 010936 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIA 249 (497)
Q Consensus 171 ~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~ 249 (497)
.++++.+||.+..++.+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 99999999987776644 57999999999999999999999999999999999999999999999976 4999999
Q ss_pred EeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHH
Q 010936 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (497)
Q Consensus 250 ~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (497)
+||++ ..+.++||++++|++|++++.|+++++...
T Consensus 225 vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 225 TSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99996 578889999999999999999998877654
No 247
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-42 Score=360.23 Aligned_cols=212 Identities=31% Similarity=0.433 Sum_probs=182.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+|+|+++.|. +++++|+++||+|++||-+||+|+|||||||++|+|.++.. + +|+|++||++++.
T Consensus 351 ~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 351 SIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLES 422 (591)
T ss_pred cEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHH
Confidence 499999999994 44569999999999999999999999999999999999988 3 8999999998642
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgG 198 (497)
.++.|||||||..||.+ ||.+|+.|+..- .+.++ +.+..+..| +++.+.|.||+ +...||||
T Consensus 423 lR~~Ig~VPQd~~LFnd-TIl~NI~YGn~s-----as~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGG 491 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFND-TILYNIKYGNPS-----ASDEE----VVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGG 491 (591)
T ss_pred hhhheeEeCCcccccch-hHHHHhhcCCCC-----cCHHH----HHHHHHHcCcHHHHHhccccchhhHhh-cccccccc
Confidence 24679999999999987 999999998432 22222 333334333 45678899997 66779999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+||||++.||+|+++|||||.||.++..++++.+.+. -.|+|+|++.|+. ....-||+|++|++|++.+.|+
T Consensus 492 ekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 492 EKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred hHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEecc
Confidence 999999999999999999999999999999999999999983 3589999999995 4678899999999999999999
Q ss_pred chhHHH
Q 010936 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
.++++.
T Consensus 569 h~ell~ 574 (591)
T KOG0057|consen 569 HSELLA 574 (591)
T ss_pred HHHHhh
Confidence 998875
No 248
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-42 Score=334.70 Aligned_cols=212 Identities=28% Similarity=0.407 Sum_probs=170.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|. ..+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYD----EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecC----CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHH
Confidence 378999999983 2246999999999999999999999999999999999999885 8999999987431
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgG 198 (497)
..+.++|++|++.+++. ||+||+.+..... .. ..+.+.++.+++.+..+ +.++ ..+..||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~-----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G 143 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRPNA-----TD----EEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQG 143 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCCCC-----CH----HHHHHHHHHhChHHHHHhCcccccCHhh-cCCCcCCHH
Confidence 13469999999988876 9999998763211 11 12333344444332211 1221 245789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+||++|+.+|+++||||||+|||+.++..+++.|+++. +|+|||++||++ .++ ..||++++|++|++++.|+
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~i~~l~~g~~~~~~~ 220 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRL-STI-KNADKILVLDDGKIIEEGT 220 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCH-HHH-hhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999986 489999999996 455 4699999999999999888
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
.+++.
T Consensus 221 ~~~~~ 225 (229)
T cd03254 221 HDELL 225 (229)
T ss_pred HHHHH
Confidence 76653
No 249
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.4e-42 Score=355.48 Aligned_cols=254 Identities=27% Similarity=0.378 Sum_probs=211.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.|++|..|+.++++..|...... .-.++.-.+.++++++.-+ +..+++|+|+||++.+
T Consensus 304 ~Ar~s~~Rl~~lL~~~p~~~~~m-------------------~LP~P~g~L~Ve~l~~~PP---g~~~pil~~isF~l~~ 361 (580)
T COG4618 304 AARQSYKRLNELLAELPAAAERM-------------------PLPAPQGALSVERLTAAPP---GQKKPILKGISFALQA 361 (580)
T ss_pred HHHHHHHHHHHHHHhCccccCCC-------------------CCCCCCceeeEeeeeecCC---CCCCcceecceeEecC
Confidence 58899999999999887754311 0112445699999998432 3568999999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+||||||||||.|+|.|..+|. +|.|++||.+... .-++|||+||+-.||+. ||.|||.=.....
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~ 437 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEA 437 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccC
Confidence 9999999999999999999999999985 9999999987532 23679999999999998 9999996442111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~ 236 (497)
.++.+-...+.+.+++++ +.+++.+||.||+ ....||||||||+++||||..+|.+++||||-|+||..-...+.+.
T Consensus 438 d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A 514 (580)
T COG4618 438 DPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514 (580)
T ss_pred CHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH
Confidence 111111223334566666 5788999999997 6678999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHH
Q 010936 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (497)
Q Consensus 237 L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (497)
|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.+|++..+
T Consensus 515 i~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 515 ILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999974 78999999999999999999999987644
No 250
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.5e-42 Score=332.06 Aligned_cols=202 Identities=29% Similarity=0.357 Sum_probs=171.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
+.++++++.| +.+++|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|+++|++...
T Consensus 23 l~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~------ 88 (224)
T cd03220 23 LGILGRKGEV-----GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSL------ 88 (224)
T ss_pred hhhhhhhhhc-----CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchh------
Confidence 6677787777 4578999999999999999999999999999999999999886 9999999986421
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
..+...+++.+||+||+.+..... .....+.++.+.++++.++|.+..++.+ .+||||||||++|||+|+.
T Consensus 89 -~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 89 -LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred -hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 111234557789999999875432 1233444556788999999988777755 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+|+++||||||+|||+.++..+.+.|++++++|.|||++||++ .++..+||++++|++|++++.|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987789999999995 6788899999999999998764
No 251
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-41 Score=325.82 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=170.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.+ +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACER-----DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEE-----CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhh
Confidence 7889999998 3467999999999999999999999999999999999999886 8999999987532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||.||+.+....+. . ...++++++++.+||.+..++.+ ..||||||||++||+
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~ 142 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALAR 142 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHH
Confidence 568999999999999999999998764321 1 12356788999999987766644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
||+++|++++|||||+|||+.++..+.+.|++++++|.|||++||++ .++....+|++++
T Consensus 143 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 99999999999999999999999999999999987789999999996 5676766777766
No 252
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.1e-41 Score=332.05 Aligned_cols=218 Identities=28% Similarity=0.345 Sum_probs=177.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECCEecCC----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~---- 125 (497)
|+++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+. +|. +|+|.++|.+...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHH
Confidence 78999999983 467999999999999999999999999999999999995 464 8999999986421
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc-cC--C-CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARL-RL--P-DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~-~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (497)
....++|++|++.+++.+|+.+++.+.... .. . .........+.++++++.+++.+ ..++.+. +.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHH
Confidence 124599999999988888887776543211 10 0 00112233456788899999953 4444331 269999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~G 277 (497)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++ ..+... +|++++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999999987789999999996 566666 8999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+.+.+
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 88754
No 253
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.5e-42 Score=409.11 Aligned_cols=255 Identities=23% Similarity=0.307 Sum_probs=200.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|++|+.++++.+|..+..-.+ . .. .. ........|+++||++.|+.+ +++++|+|+||+|++
T Consensus 1128 ~a~~a~~ri~~ll~~~~~~~~~~~~---~--~~-----~~--~~~~~~g~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~ 1193 (1466)
T PTZ00265 1128 NAKLSFEKYYPLIIRKSNIDVRDNG---G--IR-----IK--NKNDIKGKIEIMDVNFRYISR--PNVPIYKDLTFSCDS 1193 (1466)
T ss_pred HHHHHHHHHHHHHCCCCcCCCCCCc---c--cc-----cc--cCCCCCceEEEEEEEEECCCC--CCCccccCeeEEEcC
Confidence 5889999999999876643210000 0 00 00 000112259999999999632 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCC---------------------------------------------------C
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASN---------------------------------------------------A 110 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~---------------------------------------------------~ 110 (497)
|+.+||+||||||||||+++|+|+++|. .
T Consensus 1194 G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 (1466)
T PTZ00265 1194 KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVF 1273 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 9999999999999999999999999872 0
Q ss_pred CceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-------C
Q 010936 111 FLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM-------G 178 (497)
Q Consensus 111 ~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------g 178 (497)
+.+|+|++||.++.. .++.++||+|++.+|+. |++|||.|+.. ..+.++ +.++++.. .
T Consensus 1274 ~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~-----~at~ee----I~~A~k~A~l~~fI~~ 1343 (1466)
T PTZ00265 1274 KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE-----DATRED----VKRACKFAAIDEFIES 1343 (1466)
T ss_pred CCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHh
Confidence 148999999998632 24679999999999976 99999999732 123332 33333332 4
Q ss_pred CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChH
Q 010936 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE 257 (497)
Q Consensus 179 L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~ 257 (497)
|++.+||.||+ +...||||||||++|||||+++|+|||||||||+||+.++..|.+.|.++. .+++|+|+++|+++
T Consensus 1344 LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls-- 1420 (1466)
T PTZ00265 1344 LPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA-- 1420 (1466)
T ss_pred CccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--
Confidence 56788999996 677899999999999999999999999999999999999999999999986 36899999999963
Q ss_pred HHhcCCeEEEeeC----CeEE-EEeCchhHH
Q 010936 258 VFELFDRLYLLSG----GKTV-YFGETSAAF 283 (497)
Q Consensus 258 i~~~~D~v~~L~~----G~iv-~~G~~~~~~ 283 (497)
..+.||+|++|++ |+++ +.|+.++++
T Consensus 1421 ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1421 SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 4677999999999 9955 899988875
No 254
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=9e-42 Score=331.64 Aligned_cols=207 Identities=24% Similarity=0.391 Sum_probs=172.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.| +++++|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 7 ~i~~~~l~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLA-----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEee-----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHH
Confidence 58999999998 3467999999999999999999999999999999999999885 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++. ||+||+.+....+. .. ...+++.++++.+++. ...++. +..|||||+|||+
T Consensus 79 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~ 147 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQRIS 147 (225)
T ss_pred HHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHH
Confidence 13468999999988875 99999988644321 11 1234577899999996 355554 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEee-CCeEEEEeC
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLS-GGKTVYFGE 278 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~-~G~iv~~G~ 278 (497)
|||+|+.+|+++||||||+|||+.++..+.+.|+++.++ |.|||++||++ +++ ..||++++|+ ++..+..|.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEecccchHhhhh
Confidence 999999999999999999999999999999999999764 89999999996 456 5799999995 454445553
No 255
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.2e-41 Score=325.07 Aligned_cols=194 Identities=28% Similarity=0.366 Sum_probs=169.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.| +.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 l~i~~l~~~~-----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCER-----DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEe-----CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhh
Confidence 4689999998 3467999999999999999999999999999999999999886 8999999987431 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||+||+.+..... ..++++++++.++|.+..++.+ ..||||||||++|||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~lar 138 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHADH---------SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALAR 138 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcccc---------cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHH
Confidence 57999999999998999999998863211 2356788999999987776654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+|+.+|+++||||||+|||+.++..+.+.|+++.++|.|+|++||++ .++...|++++++
T Consensus 139 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 139 LLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc-hhhhhccceeEec
Confidence 99999999999999999999999999999999887799999999996 5678899999887
No 256
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.4e-42 Score=383.31 Aligned_cols=246 Identities=26% Similarity=0.414 Sum_probs=197.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.++.+|+.++++.+++... . .. .. . ......++++|+++.|+. ..+.+|+|+|+++++
T Consensus 423 ~~~~~~~ri~~~l~~~~e~~~----~-~~-------~~----~-~~~~~~i~~~~vsf~y~~---~~~~il~~i~l~i~~ 482 (694)
T TIGR01846 423 QTGIALERLGDILNSPTEPRS----A-GL-------AA----L-PELRGAITFENIRFRYAP---DSPEVLSNLNLDIKP 482 (694)
T ss_pred HHHHHHHHHHHHHcCCCCccC----C-CC-------CC----C-CCCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 578899999999976554211 0 00 00 0 011235999999999952 235699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+|+||||||||+++|+|+++|. +|+|++||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-- 556 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP-- 556 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC--
Confidence 9999999999999999999999999986 8999999998542 24579999999999986 99999987531
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++..+ +++..||.+|+ ....||||||||++|||||+++|++|||||||++||+.+
T Consensus 557 ---~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 557 ---GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred ---CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 12222 2333444433 34567888886 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++. +++|+|++||++. . ...||+|++|++|++++.|+.+++.+
T Consensus 629 ~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 629 EALIMRNMREIC-RGRTVIIIAHRLS-T-VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCChH-H-HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999984 5799999999973 4 46699999999999999999887653
No 257
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.2e-41 Score=404.92 Aligned_cols=223 Identities=29% Similarity=0.413 Sum_probs=198.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
-.|+++||++.|.. ..+.+|+||||.|++||++||+||||||||||+|+|+|.++|+ +|+|+++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHH
Confidence 35999999999931 1367999999999999999999999999999999999999986 9999999987531
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.+||+||++.+++.+||+|++.+.+.++ +.+.++.++.++++++.+||.+..|+.++ +|||||||||+|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLST 2081 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHH
Confidence 2356999999999999999999999877664 23444556678899999999988887664 699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (497)
|+||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||||++|.+|+++..|+++++...
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999999988899999999995 789999999999999999999999998776
Q ss_pred HH
Q 010936 286 FA 287 (497)
Q Consensus 286 f~ 287 (497)
|.
T Consensus 2161 ~g 2162 (2272)
T TIGR01257 2161 FG 2162 (2272)
T ss_pred hC
Confidence 54
No 258
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.8e-42 Score=375.49 Aligned_cols=244 Identities=26% Similarity=0.334 Sum_probs=196.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.++.... + . .. . ......++++|+++.|+. .++.+|+|+|+++++
T Consensus 282 ~~~~a~~ri~~ll~~~~~~~~----~--~-------~~-~----~~~~~~I~~~~v~~~y~~---~~~~~l~~i~~~i~~ 340 (569)
T PRK10789 282 RGSAAYSRIRAMLAEAPVVKD----G--S-------EP-V----PEGRGELDVNIRQFTYPQ---TDHPALENVNFTLKP 340 (569)
T ss_pred HHHHHHHHHHHHHcCCCcccC----C--C-------CC-C----CCCCCcEEEEEEEEECCC---CCCccccCeeEEECC
Confidence 578899999999976544211 0 0 00 0 001124899999999952 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+||||||||||+++|+|+++|. +|+|.+||.+... .++.++|++|++.+|+. |++||+.++..
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 414 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP-- 414 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999997532 23579999999999986 99999987632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++..+ +++..||.+|+ ....||||||||++|||||+++|+++||||||++||+.+
T Consensus 415 ---~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 415 ---DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred ---CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 12222 2333444443 44567888886 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++. +|+|+|++||++. ....||+|++|++|++++.|+.+++.
T Consensus 487 ~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 487 EHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999875 5899999999973 45779999999999999999988764
No 259
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=335.32 Aligned_cols=221 Identities=24% Similarity=0.315 Sum_probs=180.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEECCEecC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLNGHKTK--- 124 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~--- 124 (497)
..|+++|+++.|. .+++|+|+||++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 4589999999993 4579999999999999999999999999999999999987521 14899999997532
Q ss_pred ------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP-WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
...+.++|++|++.+++. ||+||+.+..... ... ....++.+.++++.+++.+...... +..+..|||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~ 164 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSG 164 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccCCH
Confidence 113468999999999986 9999998875432 111 1223456777888888742211111 124567999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||+|||+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||++++|++|+++..|
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 68999999995 6788999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+.+++
T Consensus 243 ~~~~~ 247 (265)
T PRK14252 243 ATDTI 247 (265)
T ss_pred CHHHH
Confidence 88765
No 260
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.7e-41 Score=368.15 Aligned_cols=222 Identities=23% Similarity=0.342 Sum_probs=185.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEEC-CEe---cC-
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHK---TK- 124 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~-G~~---~~- 124 (497)
..|+++|+++.|.....+.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++ |.+ ..
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTK 354 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCccccccc
Confidence 369999999998421112356999999999999999999999999999999999999885 8999996 532 11
Q ss_pred -------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCccc
Q 010936 125 -------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-----CADTVIGNWHL 192 (497)
Q Consensus 125 -------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~~~ 192 (497)
..++.++|++|++.+++.+||.||+.+...+. .+....++++.++++.+||.+ ..++ ++
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~ 425 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK-----YP 425 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----Ch
Confidence 11246999999998999999999998864321 223334466888999999975 3454 45
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++ .++.++||++++|++|
T Consensus 426 ~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G 504 (520)
T TIGR03269 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDG 504 (520)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999999765 89999999996 6888999999999999
Q ss_pred eEEEEeCchhHHH
Q 010936 272 KTVYFGETSAAFE 284 (497)
Q Consensus 272 ~iv~~G~~~~~~~ 284 (497)
++++.|+++++.+
T Consensus 505 ~i~~~g~~~~~~~ 517 (520)
T TIGR03269 505 KIVKIGDPEEIVE 517 (520)
T ss_pred EEEEECCHHHHHh
Confidence 9999998877643
No 261
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-41 Score=340.30 Aligned_cols=225 Identities=29% Similarity=0.415 Sum_probs=182.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC--
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~-- 125 (497)
..|+++||++.|. .+.+|+++||++++||+++|+|+|||||||||++|+|++++. ...+|+|.++|.++..
T Consensus 44 ~~l~i~nl~~~~~-----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 44 AKLSVEDLDVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ceEEEEEEEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3689999999993 467999999999999999999999999999999999998631 0248999999987531
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC---------CCCC-HHHHHHHHHHHHHHcCCCccccccccCc
Q 010936 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP---------DKMP-WSEKRTLVERTIIEMGLQDCADTVIGNW 190 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (497)
.++.++|++|++.+++. ||+||+.++...... .... ....++.+.++++.+++.+...... +.
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 196 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DD 196 (305)
T ss_pred ccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cC
Confidence 12469999999988875 999999987532100 0011 1223456788999998854332222 23
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE-EEee
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL-YLLS 269 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v-~~L~ 269 (497)
++..|||||||||+||+||+++|+||||||||+|||+.++..+.+.|+++++ +.|||++||++ ..+.++||++ ++|+
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVFLT 274 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEEec
Confidence 5678999999999999999999999999999999999999999999999977 48999999996 6788999997 5789
Q ss_pred CCeEEEEeCchhHH
Q 010936 270 GGKTVYFGETSAAF 283 (497)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (497)
+|++++.|+++++.
T Consensus 275 ~G~i~~~g~~~~~~ 288 (305)
T PRK14264 275 GGELVEYDDTDKIF 288 (305)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999887653
No 262
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=316.87 Aligned_cols=169 Identities=33% Similarity=0.544 Sum_probs=153.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhh
Confidence 46899999883 356999999999999999999999999999999999999885 8999999987531 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+|+.||+. |||||+||++|||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~lar 108 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQ 108 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHH
Confidence 56999999999999899999863 8999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++ .++.++||++++|++|++
T Consensus 109 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999987789999999996 578889999999999864
No 263
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.8e-41 Score=367.09 Aligned_cols=224 Identities=28% Similarity=0.345 Sum_probs=186.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecCC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--- 125 (497)
.++++|+++.|..+ +..+.+|+|+||++++||++||+||||||||||+++|+|+++|. .+.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~~~-~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQ-QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCC-CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 58999999999421 11357999999999999999999999999999999999999762 1148999999987421
Q ss_pred ------CcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCcccCC
Q 010936 126 ------SFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC---ADTVIGNWHLRG 194 (497)
Q Consensus 126 ------~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~ 194 (497)
..+.++|++|++. +++.+||.+++.+...... ..+..+..++++++++.+||.+. .++ ++.+
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~~ 156 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD-----YPHQ 156 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh-----CCcc
Confidence 1146999999974 6777899999886543211 23344556778999999999752 355 4457
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++||++ ..+..+||+|++|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRC 235 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 89999999996 678899999999999999
Q ss_pred EEEeCchhHH
Q 010936 274 VYFGETSAAF 283 (497)
Q Consensus 274 v~~G~~~~~~ 283 (497)
++.|+++++.
T Consensus 236 ~~~g~~~~~~ 245 (529)
T PRK15134 236 VEQNRAATLF 245 (529)
T ss_pred EEeCCHHHHh
Confidence 9999887763
No 264
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.6e-41 Score=369.03 Aligned_cols=222 Identities=27% Similarity=0.389 Sum_probs=186.3
Q ss_pred EEEEEeEEEEEEccCC------cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC
Q 010936 51 RLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~ 124 (497)
.|+++|+++.|..+.+ +.+.+|+||||++++|++++|+||||||||||+++|+|+++ . +|+|+++|+++.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEcc
Confidence 5899999999942110 13579999999999999999999999999999999999984 3 899999998642
Q ss_pred C--------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccC
Q 010936 125 L--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLR 193 (497)
Q Consensus 125 ~--------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 193 (497)
. .++.++|++|++ .+++.+||.||+.++...+.. ..+..+.++++.++++.+||. +..++. +.
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----Cc
Confidence 1 124689999996 478889999999987543210 123334456788999999997 356654 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++ .++.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCE
Confidence 79999999999999999999999999999999999999999999999875 89999999995 67889999999999999
Q ss_pred EEEEeCchhHH
Q 010936 273 TVYFGETSAAF 283 (497)
Q Consensus 273 iv~~G~~~~~~ 283 (497)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999887763
No 265
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.5e-41 Score=332.92 Aligned_cols=202 Identities=27% Similarity=0.387 Sum_probs=174.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.++++|+++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG-----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEEC-----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc------cCE
Confidence 589999999993 467999999999999999999999999999999999999885 899999872 359
Q ss_pred EEEcCCCCCCCC--CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGT--LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 131 ~yv~Q~~~l~~~--lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
+|++|++.+++. .|+.+++.+.. ... .+++.++++.+||.+..++.+ ..|||||||||+||+|
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~lara 134 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARA 134 (251)
T ss_pred EEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHH
Confidence 999999887775 47787765421 111 234678899999988777644 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++ +++..|+++++.
T Consensus 135 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 135 LLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 99999999999999999999999999999999875 89999999996 678899999999965 788999887653
No 266
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.7e-41 Score=372.73 Aligned_cols=246 Identities=25% Similarity=0.335 Sum_probs=193.4
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.++.+|+.++++.++...... .+ . .. ......++++|+++.|+ +.+++|+|+|+++++
T Consensus 301 ~~~~~~~ri~~~~~~~~~~~~~~----~~---------~--~~-~~~~~~i~~~~v~~~y~----~~~~~l~~i~~~i~~ 360 (585)
T TIGR01192 301 EARAKLEDFFDLEDSVFQREEPA----DA---------P--EL-PNVKGAVEFRHITFEFA----NSSQGVFDVSFEAKA 360 (585)
T ss_pred HHHHHHHHHHHHHcCCccccCCc----cC---------C--CC-CCCCCeEEEEEEEEECC----CCCccccceeEEEcC
Confidence 46788999999987654321100 00 0 00 01122599999999994 235689999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+||||||||||+++|+|+++|. +|+|.+||.+... .++.++||+|++.+++. |++||+.++..
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~-- 434 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGRE-- 434 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 9999999987532 23679999999999875 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.++. .+.++.. .+.+..|+.+|+ .+..||||||||++|||||+++|++|+|||||+|||+.+
T Consensus 435 ---~~~~~~~----~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 435 ---GATDEEV----YEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred ---CCCHHHH----HHHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 1222222 2222222 234456777776 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++. +++|+|++||++ +.+ ..||+|++|++|++++.|+.+++.+
T Consensus 507 ~~~i~~~l~~~~-~~~tvI~isH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 507 EARVKNAIDALR-KNRTTFIIAHRL-STV-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HHHHHHHHHHHh-CCCEEEEEEcCh-HHH-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999874 489999999996 344 6799999999999999999887653
No 267
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-41 Score=333.10 Aligned_cols=211 Identities=32% Similarity=0.422 Sum_probs=169.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|. +.+.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~----~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYD----PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHH
Confidence 46889999883 2356999999999999999999999999999999999999885 9999999987531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGe 199 (497)
++.++|++|++.+++ .||+||+.+.... ..... +.+.++..++.+ ..++.+. ..+..|||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~LS~G~ 142 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKLSGGE 142 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHH
Confidence 346999999998886 5999999876321 11111 222222223221 1222222 2456899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||++ ..+. .||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~-~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL-STIV-NADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHH-hCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 99999999996 4564 5999999999999998887
Q ss_pred hhHH
Q 010936 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 6653
No 268
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.6e-41 Score=372.60 Aligned_cols=248 Identities=29% Similarity=0.411 Sum_probs=196.9
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.++.+|+.++++.++..+.... + . . ...+....++++|+++.|+.. .++.+|+|+||++++
T Consensus 303 ~~~~~~~ri~~~l~~~~~~~~~~~----~---~----~----~~~~~~~~i~~~~v~f~y~~~--~~~~iL~~inl~i~~ 365 (576)
T TIGR02204 303 RAAGAAERLIELLQAEPDIKAPAH----P---K----T----LPVPLRGEIEFEQVNFAYPAR--PDQPALDGLNLTVRP 365 (576)
T ss_pred HHHHHHHHHHHHhCCCCcCCCCCC----C---c----c----CCcCCCceEEEEEEEEECCCC--CCCccccceeEEecC
Confidence 467899999999876544221000 0 0 0 000112359999999999531 226799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.++|+|+||||||||+++|+|+++|. +|+|.+||.+... .++.++|+||++.+|+. |++||+.++..
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-- 439 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-- 439 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC--
Confidence 9999999999999999999999999986 8999999987532 13579999999999987 99999987531
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..|+ ++..|+.+|+ ....||||||||++||||++++|++|+||||||+||+.+
T Consensus 440 ---~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 440 ---DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 1122 335555555554 3456788876 467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+..+.+.|+++. +++|+|++||++ +....||+|++|++|+++..|+.+++.
T Consensus 512 ~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 512 EQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHH
Confidence 999999999985 479999999996 356789999999999999999987754
No 269
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.9e-41 Score=321.45 Aligned_cols=186 Identities=31% Similarity=0.389 Sum_probs=159.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECCEecCC----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~---- 125 (497)
++++|+++.|. ++.+|+|+||++++||+++|+|+||||||||+++|+|.. +|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHH
Confidence 46899999983 357999999999999999999999999999999999994 554 8999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.+..++|++|++.+++.+|+++++. . ....||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1235999999999998888877660 0 1136999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHh-cCCeEEEeeCCeEEEEeCchhH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||+|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ ..+.+ +||++++|++|++++.|+. ++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~-~~~~~~~~d~i~~l~~G~i~~~~~~-~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ-RLLDYIKPDRVHVLYDGRIVKSGDK-EL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhhCCEEEEEECCEEEEEccH-HH
Confidence 999999999999999999999999999999999999987789999999996 46666 7999999999999999944 45
Q ss_pred HHHH
Q 010936 283 FEFF 286 (497)
Q Consensus 283 ~~~f 286 (497)
...+
T Consensus 192 ~~~~ 195 (200)
T cd03217 192 ALEI 195 (200)
T ss_pred Hhhh
Confidence 4433
No 270
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=365.48 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=185.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC-CCCceeEEEECCEecCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-NAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~-~~~~~G~I~~~G~~~~~---- 125 (497)
.|+++|+++.|..+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++| . +|+|.++|++...
T Consensus 259 ~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 259 ILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred eEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHH
Confidence 58999999987311 135699999999999999999999999999999999999874 5 8999999987531
Q ss_pred --CcCcEEEEcCCC---CCCCCCCHHHHHHHHhhccCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 126 --SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLPD--KMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 --~~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
..+.++|++|++ .+++.+||.||+.+........ .....+.+++++++++.++|. +..++.+ ..|||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 408 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSG 408 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCH
Confidence 124589999995 4788899999998763211100 012333446688999999996 4666654 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++ +++.++||++++|++|+++..|
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999988899999999996 6889999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 87654
No 271
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.8e-41 Score=324.83 Aligned_cols=206 Identities=29% Similarity=0.372 Sum_probs=170.7
Q ss_pred EEEEeEEEEEEccC-Cc-ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEEC--CE--ecCC
Q 010936 52 LTWKDLTVMVTLSN-GE-THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN--GH--KTKL 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~-~~-~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~--G~--~~~~ 125 (497)
++++|+++.|.... .+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++ |. +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhh
Confidence 78999999994211 01 247999999999999999999999999999999999999885 8999998 42 3210
Q ss_pred ---------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCC
Q 010936 126 ---------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGI 195 (497)
Q Consensus 126 ---------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~L 195 (497)
..+.++|++|++.+++.+||.||+.+..... ........+++.++++.+||.+. .+. .+.+|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----CcccC
Confidence 1246899999999999999999998864332 22333445678889999999753 344 34579
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++ ..+..+||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999999999987799999999994 56778999998763
No 272
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.2e-41 Score=337.01 Aligned_cols=212 Identities=25% Similarity=0.324 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|.. +...+|+|+||+|++||+++|+|+||||||||+++|+|+++ . +|+|+++|.++..
T Consensus 2 ~i~~~nls~~~~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHH
Confidence 3889999999952 23569999999999999999999999999999999999986 3 7999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT-------VIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~LSgG 198 (497)
.++.++|+||++.+|+. ||++|+..... ... +.+.++++.+||.+..+. .+++ ....||||
T Consensus 75 lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS~G 142 (275)
T cd03289 75 WRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLSHG 142 (275)
T ss_pred HhhhEEEECCCcccchh-hHHHHhhhccC------CCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCCHH
Confidence 13579999999999986 99999964311 111 346677788888654433 3333 34569999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
||||++|||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+++|++ +.+. .||+|++|++|++++.|+
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999999874 489999999996 5555 599999999999999999
Q ss_pred chhHHH
Q 010936 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
++++..
T Consensus 220 ~~~l~~ 225 (275)
T cd03289 220 IQKLLN 225 (275)
T ss_pred HHHHhh
Confidence 998764
No 273
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4.7e-41 Score=320.19 Aligned_cols=193 Identities=27% Similarity=0.353 Sum_probs=165.4
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.| +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... ..
T Consensus 1 l~~~~l~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSR-----GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEE-----CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhh
Confidence 4688999998 3467999999999999999999999999999999999999885 8999999987432 12
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++.+||.||+.+...... . + .+.+.++++.++|.+..++.+ ..|||||||||+||+
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~--~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~ 140 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG----G--A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALAR 140 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC----C--c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHH
Confidence 568999999989988999999988754321 1 1 245788999999987777654 479999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEE
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~ 267 (497)
||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++. .-.|++++.
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~---~~~~~~~~~ 197 (198)
T TIGR01189 141 LWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL---GLVEARELR 197 (198)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc---cccceEEee
Confidence 999999999999999999999999999999999878999999999974 335677664
No 274
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.7e-41 Score=322.53 Aligned_cols=197 Identities=28% Similarity=0.369 Sum_probs=168.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC--CcC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFG 128 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~ 128 (497)
.++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|+++|.+... .++
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRG-----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEEC-----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHh
Confidence 589999999983 467999999999999999999999999999999999999885 8999999987432 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++|++.+++.+||+||+.+..... ... .+.+.++++.+||.+..++.+ +.||||||||++||++
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~a 141 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARL 141 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHH
Confidence 6899999988888899999998865432 111 234788999999987666544 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.. |+++.+..
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 142 LVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 9999999999999999999999999999999887899999999996 45554 88877743
No 275
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-41 Score=315.87 Aligned_cols=170 Identities=38% Similarity=0.525 Sum_probs=153.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYG-----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEEC-----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHH
Confidence 46899999883 367999999999999999999999999999999999999885 8999999987432
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
..+.++|++|++.+++.+|++||+.+. ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~ 110 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVA 110 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHH
Confidence 135799999999999889999987542 8999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++ .++.++||++++|++|+
T Consensus 111 la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999887 89999999995 67888999999999884
No 276
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-42 Score=319.21 Aligned_cols=218 Identities=26% Similarity=0.417 Sum_probs=194.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----- 126 (497)
++++|++++| +.+.+|+++|+++++|.+++|+|||||||||||.+++.+++.+ +|+|+++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHH
Confidence 6789999999 5789999999999999999999999999999999999999886 99999999985321
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++.+-|+..+...+||+|-+.|+..-+ ..+....+.+..+++.++.++|++..|+.+ .+||||||||..||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhH-----Hhcccchhhhhhhh
Confidence 256788999998889999999999985332 223344566788999999999999988855 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+.|+++.+.++||||.++||-..+.++++.|++++++ |+|||++.||. +.+..++|+|+-|++|+++..|++++++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999986 99999999996 68889999999999999999999999763
No 277
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-41 Score=363.64 Aligned_cols=213 Identities=20% Similarity=0.338 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.+ ..+|+|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|++...
T Consensus 265 ~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHH
Confidence 59999999764 13899999999999999999999999999999999999885 8999999987531
Q ss_pred -CcCcEEEEcCC---CCCCCCCCHHHHHHHHhhcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCC
Q 010936 126 -SFGTAAYVTQD---DNLIGTLTVRETISYSARLR---LPD--K-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRG 194 (497)
Q Consensus 126 -~~~~i~yv~Q~---~~l~~~lTV~e~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 194 (497)
..+.++|++|+ ..+++.+||+||+.+....+ ... . ......++.++++++.+||. +..++.+ .+
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 409 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TE 409 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----cc
Confidence 12468999998 46888999999998764321 000 0 11223335678899999996 6677755 47
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||+ .++..+||++++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999996 6889999999999999999
Q ss_pred EEeCc
Q 010936 275 YFGET 279 (497)
Q Consensus 275 ~~G~~ 279 (497)
+.++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88765
No 278
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.7e-41 Score=325.17 Aligned_cols=207 Identities=25% Similarity=0.376 Sum_probs=169.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.+.. ..+.+|+|+||++++|++++|+||||||||||+++|+|..+|. +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHH
Confidence 3789999999842 2357999999999999999999999999999999999999885 8999999987431
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgG 198 (497)
..+.++|++|++.+++ .||+||+.+... .. ...+.+.++.+++.+..+ +..+ ..+..||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~~~~LS~G 143 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVE-EGGENLSVG 143 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccccccc-cCCCcCCHH
Confidence 2356999999998776 599999965321 11 123455566666654332 2222 256789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||++ .++. .||++++|++|++++.|+
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999999864 68999999996 4565 599999999999998775
No 279
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.2e-40 Score=396.52 Aligned_cols=221 Identities=28% Similarity=0.391 Sum_probs=195.9
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||++.|.. +++.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..
T Consensus 927 ~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred ceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHH
Confidence 46999999999942 2467999999999999999999999999999999999999986 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.+||+||++.+++.+||+||+.+.+.++ +.+..+.+++++++++.+||.+..++.+ ++|||||||||+|
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLSV 1072 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHH
Confidence 2356999999999999999999999987654 2334455667899999999988877755 4799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (497)
|+||+.+|+++||||||+|||+.++..++++|++++ +|+|||++||++ +++..+||||++|++|+++..|+++++...
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999995 589999999995 688899999999999999999999988764
Q ss_pred H
Q 010936 286 F 286 (497)
Q Consensus 286 f 286 (497)
|
T Consensus 1151 ~ 1151 (2272)
T TIGR01257 1151 F 1151 (2272)
T ss_pred c
Confidence 4
No 280
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=302.19 Aligned_cols=215 Identities=27% Similarity=0.366 Sum_probs=191.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK----- 124 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~----- 124 (497)
+.|+++|+++.| +..++|.||+++.+.||.+.++||||||||||++.|.=+..|. +|+..+.|....
T Consensus 1 msirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~ 72 (242)
T COG4161 1 MSIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTP 72 (242)
T ss_pred CceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCc
Confidence 358899999999 5678999999999999999999999999999999999887775 999999886421
Q ss_pred ------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHH
Q 010936 125 ------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 125 ------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 198 (497)
..++.+|+|+|+-.++|.|||.||+.-+.. +. .++++.+.+.++.++|+.+.|.+.+|+ +|-.||||
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsgg 145 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGG 145 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceecccc
Confidence 113568999999999999999999976532 21 256788888999999999999999887 55679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|+|||+|||||+.+|.+|++||||++|||+-..+++++|++|+..|.|-+++||.. +...+.+.+|+.|.+|+|++.|+
T Consensus 146 qqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred hhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecc
Confidence 99999999999999999999999999999999999999999999999999999995 67788999999999999999998
Q ss_pred ch
Q 010936 279 TS 280 (497)
Q Consensus 279 ~~ 280 (497)
.+
T Consensus 225 a~ 226 (242)
T COG4161 225 AS 226 (242)
T ss_pred hh
Confidence 75
No 281
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1e-40 Score=313.83 Aligned_cols=170 Identities=29% Similarity=0.450 Sum_probs=153.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.| +|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHH
Confidence 48899998875 899999999999999999999999999999999999886 8999999987532
Q ss_pred -CcCcEEEEcCCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 -SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 -~~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++ .+++.+|++||+.+... |||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~q 111 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQ 111 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHH
Confidence 135699999984 57888999999876421 8999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|++||+||+.+|+++||||||+|||+.++..+.+.|++++++|.|+|++||++ +++.++||++++|++|++
T Consensus 112 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999977789999999995 678999999999999974
No 282
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.8e-41 Score=360.90 Aligned_cols=208 Identities=23% Similarity=0.249 Sum_probs=178.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|. .+.+|+|+||++++|++++|+||||||||||||+|+|+++|+ +|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLS-----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcC-----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHH
Confidence 489999999993 356999999999999999999999999999999999999885 8999999875421
Q ss_pred CcCcEEEEcCCCCC--C-C-----CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 126 SFGTAAYVTQDDNL--I-G-----TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l--~-~-----~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
..+.++|++|++.+ + + .+||+|++.+. ....++++++++.+||.+..++.+ .+|||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 138 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF-----KYLST 138 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc-----ccCCH
Confidence 12358999998643 1 1 46888877532 112356888999999987777755 47999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ ..+.++||++++|++|+++..|
T Consensus 139 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 217 (490)
T PRK10938 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETG 217 (490)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987899999999996 6788999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 218 ~~~~~~ 223 (490)
T PRK10938 218 EREEIL 223 (490)
T ss_pred CHHHHh
Confidence 987653
No 283
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.2e-41 Score=367.95 Aligned_cols=220 Identities=31% Similarity=0.408 Sum_probs=174.9
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.++...... .+ . .. .. ......++++|+++.|+ +++++|+|+|+++++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~~----~~---~----~~--~~-~~~~~~I~~~~vsf~Y~----~~~~vL~~isl~i~~ 360 (529)
T TIGR02868 299 RVRAAAERIEEVTGAKGPRPEGV----VP---A----AG--AL-GLGKPTLELRDLSFGYP----GSPPVLDGVSLDLPP 360 (529)
T ss_pred HHHHHHHHHHHHhcCCCCcCCCC----CC---C----Cc--cc-CCCCceEEEEEEEEecC----CCCceeecceEEEcC
Confidence 57889999999998665432100 00 0 00 00 01123599999999994 234699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~ 157 (497)
||.+||+||||||||||+++|+|+++|+ +|+|.+||.+... .++.++||||++.+|+. |++|||.++..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~--- 433 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP--- 433 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC---
Confidence 9999999999999999999999999996 9999999988542 23579999999999987 99999998732
Q ss_pred CCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 010936 158 PDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
..+. +.+.++++..++ ++..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.++
T Consensus 434 --~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 434 --DATD----EELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred --CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1222 234455555444 4667999997 5677999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 231 FFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
..+.+.|+++. +++|+|+++|++
T Consensus 507 ~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 507 SELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999864 479999999984
No 284
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.3e-41 Score=327.50 Aligned_cols=211 Identities=28% Similarity=0.413 Sum_probs=169.3
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
.-.++++|+++.|..+ ..+.+|+|+|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 9 ~~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 83 (226)
T cd03248 9 KGIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEH 83 (226)
T ss_pred CceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCH
Confidence 3458999999999421 1246999999999999999999999999999999999999885 8999999986421
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCcccCCCCHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerq 201 (497)
..+.++|++|++.+++ .||+||+.++.................+.++++.+ |+.+..++ ++..|||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~q 157 (226)
T cd03248 84 KYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQKQ 157 (226)
T ss_pred HHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHHH
Confidence 1356999999998886 59999998754311000000011112356778888 77655555 34679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++||++ .++. .||++++|++|++
T Consensus 158 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 158 RVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRL-STVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCH-HHHH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999865 68999999996 4664 5999999999864
No 285
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-40 Score=317.43 Aligned_cols=192 Identities=22% Similarity=0.276 Sum_probs=165.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
|+++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|+++|++... ..
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYH-----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeC-----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHH
Confidence 78999999983 467999999999999999999999999999999999999886 9999999986532 13
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|+..+++.+||+||+.+..... .. ...+.++++.+++.+..++.+ ..|||||+||++|||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~lar 140 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLR 140 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHH
Confidence 56999999999988999999999864221 11 245788999999987666654 469999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. ....||...
T Consensus 141 al~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 141 LWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 999999999999999999999999999999998777999999999963 456677654
No 286
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-40 Score=359.49 Aligned_cols=221 Identities=22% Similarity=0.350 Sum_probs=183.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.|..+ +.+.+|+|+||++++||+++|+|||||||||||++|+|+++|. .+|+|.++|++...
T Consensus 256 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 256 VILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNPA 331 (500)
T ss_pred ceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCHH
Confidence 369999999877311 1346999999999999999999999999999999999999851 28999999987531
Q ss_pred --CcCcEEEEcCCC---CCCCCCCHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCH
Q 010936 126 --SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLP--DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISG 197 (497)
Q Consensus 126 --~~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSg 197 (497)
.++.++|++|+. .+++.+||+||+.++...... ........++.++++++.++|.+ ..++.+ ..|||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 406 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSG 406 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCH
Confidence 134689999995 588999999999886321110 01222334566889999999964 456654 47999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+ +++.++||++++|++|+++..+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999996 6899999999999999999877
Q ss_pred Cch
Q 010936 278 ETS 280 (497)
Q Consensus 278 ~~~ 280 (497)
+.+
T Consensus 486 ~~~ 488 (500)
T TIGR02633 486 VNH 488 (500)
T ss_pred ccc
Confidence 654
No 287
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-40 Score=347.91 Aligned_cols=212 Identities=21% Similarity=0.286 Sum_probs=180.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.++++||++.+..+ ..+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~--~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~------- 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG--EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA------- 88 (549)
T ss_pred eeEEEEEEEecCCC--ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee-------
Confidence 58899999887421 2356999999999999999999999999999999999999885 89999999752
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
++.+...+++.+||+||+.+..... ..+..+..+.+.++++.++|.+..++.+ +.|||||||||+|||||+
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVH 159 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHH
Confidence 2233445677789999998864332 2234444566788999999987777654 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.+|++|||||||+|||+.++..+++.|++++++|.|||++||++ .++.++||++++|++|++++.|+++++..
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999987799999999996 67889999999999999999999888764
No 288
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=327.60 Aligned_cols=193 Identities=29% Similarity=0.420 Sum_probs=173.9
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec---------CCCcCcEEEEcCCCCCCCCCC
Q 010936 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---------KLSFGTAAYVTQDDNLIGTLT 144 (497)
Q Consensus 74 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~---------~~~~~~i~yv~Q~~~l~~~lT 144 (497)
+++|+.+.-.++||.|+||||||||+|+|+|+.+|+ +|.|.+||.-. ...++++||||||..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 678888876799999999999999999999999997 99999999742 123578999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 010936 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSG 224 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsg 224 (497)
|+.||.|+.... .....+++...+|+.|..++ +|..|||||||||+|+|||++.|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999985431 23457888999999999887 6678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 225 LDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||-....+++-+|.+|+++ +..|+.+||.+ +|+.+++|+|++|++|++..+|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999986 89999999995 79999999999999999999999998754
No 289
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.7e-40 Score=330.07 Aligned_cols=227 Identities=32% Similarity=0.427 Sum_probs=200.4
Q ss_pred ceeEEEEEeEEEEEEccCC------cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010936 48 VSARLTWKDLTVMVTLSNG------ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
.++.++.+|+++.|+.+.+ ....++++||+++++||.+||+|+||||||||=.+|.+++++ +|+|.|+|+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~ 348 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQ 348 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCc
Confidence 4567999999999987532 235689999999999999999999999999999999999987 699999999
Q ss_pred ecCC--------CcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 010936 122 KTKL--------SFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (497)
Q Consensus 122 ~~~~--------~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 191 (497)
++.. .++++-.||||| .+.|.|||.+-+.-++....+ ..+.+++.+++.++|+.+||+... .+.|
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RY 423 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRY 423 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcC
Confidence 8531 135688999997 588999999999999877643 567888999999999999997532 2348
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
|+++|||||||++|||||+.+|++++||||||+||-.-+.+|+++|++|.++ |.+-+++|||. .-+..+||+|++|++
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~ 502 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRD 502 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeC
Confidence 9999999999999999999999999999999999999999999999999875 99999999995 688999999999999
Q ss_pred CeEEEEeCchhHHH
Q 010936 271 GKTVYFGETSAAFE 284 (497)
Q Consensus 271 G~iv~~G~~~~~~~ 284 (497)
|+||++|+.+++++
T Consensus 503 GkiVE~G~~~~if~ 516 (534)
T COG4172 503 GKIVEQGPTEAVFA 516 (534)
T ss_pred CEEeeeCCHHHHhc
Confidence 99999999988754
No 290
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.7e-40 Score=309.85 Aligned_cols=168 Identities=33% Similarity=0.515 Sum_probs=149.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|.. ..+.+++|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHH
Confidence 468999998842 1256999999999999999999999999999999999999886 8999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++|++|++.+++. ||+||+ ||||||||++||
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~la 108 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLGLA 108 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHHHH
Confidence 3569999999988875 999886 899999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ ..+ ..||++++|++|++
T Consensus 109 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 109 RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999987799999999996 455 68999999999874
No 291
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3e-40 Score=327.23 Aligned_cols=212 Identities=22% Similarity=0.289 Sum_probs=169.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++.|.. ..+.+|+|+||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 19 ~i~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 19 EIKIHDLCVRYEN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHT 92 (257)
T ss_pred eEEEEEEEEEeCC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHH
Confidence 4899999999942 1257999999999999999999999999999999999999885 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgG 198 (497)
..+.++|++|++.+++. |++||+..... ... ..+.++++.+++.+ ..++.++. .+..||||
T Consensus 93 ~~~~i~~v~q~~~l~~~-tv~~nl~~~~~------~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~~~~LS~G 160 (257)
T cd03288 93 LRSRLSIILQDPILFSG-SIRFNLDPECK------CTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE-GGENFSVG 160 (257)
T ss_pred HhhhEEEECCCCccccc-HHHHhcCcCCC------CCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-CCCcCCHH
Confidence 13569999999988875 99999854210 111 11222333333322 12233322 45689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||++ ..+.. ||++++|++|+++..|+
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~-~~~~~-~dri~~l~~G~i~~~g~ 237 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRV-STILD-ADLVLVLSRGILVECDT 237 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecCh-HHHHh-CCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999874 489999999997 45554 99999999999999998
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
++++.
T Consensus 238 ~~~~~ 242 (257)
T cd03288 238 PENLL 242 (257)
T ss_pred HHHHH
Confidence 87654
No 292
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.8e-40 Score=314.07 Aligned_cols=175 Identities=34% Similarity=0.494 Sum_probs=150.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------CcCcEEEEcCCCC--
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-------SFGTAAYVTQDDN-- 138 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-------~~~~i~yv~Q~~~-- 138 (497)
++.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..+.++|++|++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 356999999999999999999999999999999999999885 9999999987521 1246899999973
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEE
Q 010936 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218 (497)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllL 218 (497)
++ .+||+||+.+..... .....+..+++.++++.+||.+..++.+ ..||||||||++|||||+.+|+++||
T Consensus 81 ~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 81 LF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred cc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44 469999999875432 2233444567889999999987777654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
||||+|||+.++..+.+.|++++++|+|||++||++
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 999999999999999999999987899999999996
No 293
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.3e-40 Score=321.38 Aligned_cols=197 Identities=27% Similarity=0.446 Sum_probs=165.0
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCC--CCCCHHHHHHHHhh
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSAR 154 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~--~~lTV~e~l~~~~~ 154 (497)
|++++||+++|+|+||||||||+++|+|+++|. +|+|.++|++.....+.++|++|++.++ ..+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468999999999999999999999999999886 8999999987543345799999998764 34799999987632
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 010936 155 LRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (497)
Q Consensus 155 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i 233 (497)
.... ...........+.++++.+++.+..++.+ .+|||||||||+|||+|+.+|+++||||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 00111233456888999999987766654 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 234 ~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
.+.|++++++|.|+|++||++ .++.++||++++| +|++++.|+.+++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999987799999999996 5788999999999 89999999887653
No 294
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2e-40 Score=310.80 Aligned_cols=174 Identities=30% Similarity=0.439 Sum_probs=152.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----Cc
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----SF 127 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~~ 127 (497)
++++|+++.|.. ..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPE---QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCC---CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHH
Confidence 468899999842 1236999999999999999999999999999999999999885 8999999986421 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++|++.+++ .|++||+ +..||||||||++|||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~lar 111 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLALAR 111 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHHHH
Confidence 56999999998886 5999886 2369999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||+.+|++|||||||+|||+.++..+++.|+++. ++.|||++||++ .++ ..||++++|++|++++.|
T Consensus 112 al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~-~~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 112 ILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL-TGI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999985 489999999996 455 479999999999998754
No 295
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.7e-40 Score=315.30 Aligned_cols=197 Identities=22% Similarity=0.361 Sum_probs=163.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.+...
T Consensus 6 ~l~~~~l~~~~~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCC---CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHH
Confidence 4899999999842 1246999999999999999999999999999999999999885 8999999987421
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
.++.++|++|++.+++. ||+||+.+.. .... +.+.+.++ + +. .+..|||||+||++|
T Consensus 80 ~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~~qrv~l 136 (207)
T cd03369 80 LRSSLTIIPQDPTLFSG-TIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQRQLLCL 136 (207)
T ss_pred HHhhEEEEecCCcccCc-cHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHHHHHHHH
Confidence 13569999999988875 9999997531 1111 12333333 2 22 456899999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||+|+.+|+++||||||+|||+.++..+++.|+++. +|.|+|++||++ .++.. ||++++|++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~-~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRL-RTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH-HHHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999985 489999999996 45654 999999999999887753
No 296
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.2e-40 Score=393.78 Aligned_cols=249 Identities=19% Similarity=0.266 Sum_probs=198.5
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|.+||.++.+.+++...... +..+ ...| +..-.|+++|+++.|.. +.+++|+|+||+|++
T Consensus 1198 ~~~~s~eRi~e~~~~~~e~~~~~~-~~~~--~~~~----------p~~g~I~f~nVsf~Y~~---~~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1198 NSLNSVERVGNYIDLPSEATAIIE-NNRP--VSGW----------PSRGSIKFEDVHLRYRP---GLPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHhcCCcccccccc-CCCC--CCCC----------CCCCcEEEEEEEEEECC---CCCcccccceEEEcC
Confidence 457889999999976655321100 0000 0001 11225999999999942 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+++++||||++.+|+. |++|||.++.
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~--- 1334 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS--- 1334 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC---
Confidence 9999999999999999999999999986 9999999998642 24679999999999987 9999997642
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..++ ++..|+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1335 ---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1335 ---EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred ---CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 1222 234455555544 4567899986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
...|.+.|++.. +++|+|+++|++ +.+ ..||+|++|++|++++.|+++++..
T Consensus 1407 e~~Iq~~L~~~~-~~~TvI~IAHRl-~ti-~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1407 DSLIQRTIREEF-KSCTMLVIAHRL-NTI-IDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999874 479999999996 344 5599999999999999999998753
No 297
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=356.27 Aligned_cols=213 Identities=24% Similarity=0.388 Sum_probs=180.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++...
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHH
Confidence 588888873 2699999999999999999999999999999999999885 8999999987532
Q ss_pred -CcCcEEEEcCCC---CCCCCCCHHHHHHHHhhccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 126 -SFGTAAYVTQDD---NLIGTLTVRETISYSARLRLP---DKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -~~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
.++.++||+|++ .+++.+||.||+.+....... ......+.++.++++++.+||. +..++.+ ..|||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 398 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSG 398 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCH
Confidence 124699999996 578889999999875321100 0122233446688999999995 5666655 47999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|+++..|
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999987899999999996 6889999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87764
No 298
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.4e-40 Score=361.70 Aligned_cols=229 Identities=30% Similarity=0.420 Sum_probs=182.5
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.++++|+.++++.++.... . . ... ......++++|+++.|+. ..+++|+|+|+++++
T Consensus 289 ~~~~~~~ri~~ll~~~~~~~~-------~-~------~~~----~~~~~~i~~~~v~f~y~~---~~~~il~~i~l~i~~ 347 (529)
T TIGR02857 289 DGVAAAEALFAVLDAPRPLAG-------K-A------PVT----AAPAPSLEFSGLSVAYPG---RRAPALRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHhCCCcccCC-------C-c------CCC----CCCCCeEEEEEEEEECCC---CCcccccceeEEECC
Confidence 578899999999974322110 0 0 000 001125999999999952 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+||||||||||+|+|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++||+.++..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-- 421 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-- 421 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC--
Confidence 9999999999999999999999999996 8999999998532 24579999999999986 99999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..++ +.+.++++..++ ++..||.+|+ ....||||||||++|||||+++|++++||||||+||+.+
T Consensus 422 ---~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 422 ---DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1122 234455555554 3457888886 667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+..+.+.|+++. +++|+|++||++ + ..+.||+|++|
T Consensus 494 ~~~i~~~l~~~~-~~~t~i~itH~~-~-~~~~~d~i~~l 529 (529)
T TIGR02857 494 EALVTEALRALA-QGRTVLLVTHRL-A-LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCH-H-HHHhCCEEEeC
Confidence 999999999875 579999999996 3 45789999886
No 299
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=357.25 Aligned_cols=214 Identities=21% Similarity=0.311 Sum_probs=180.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.++++|+++ +.+++|+||++++||+++|+||||||||||+++|+|+++|. +|+|+++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHH
Confidence 578888863 24899999999999999999999999999999999999885 89999999875321
Q ss_pred --cCcEEEEcCCC---CCCCCCCHHHHHHHHhhccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCH
Q 010936 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRL-PDK--MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 127 --~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 197 (497)
++.++|++|++ .+++.+||.||+.++..... ... ......++.+.++++.+++. +..++.++ .|||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSg 399 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSG 399 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCH
Confidence 24689999996 48888999999987542110 001 11223345688899999994 56777554 6999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+||++|+.+|+||||||||+|||+.++..++++|++++++|.|||++|||+ .++.++||++++|++|++++.|
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999995 6899999999999999999999
Q ss_pred CchhH
Q 010936 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
++++.
T Consensus 479 ~~~~~ 483 (501)
T PRK11288 479 AREQA 483 (501)
T ss_pred ccccC
Confidence 87653
No 300
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.4e-40 Score=393.32 Aligned_cols=249 Identities=21% Similarity=0.273 Sum_probs=198.8
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|.+|+.++.+.+++......+ ..+ ...| +....|+++|+++.|.. +.+++|+||||+|++
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~~~-~~~--~~~w----------p~~g~I~f~nVsf~Y~~---~~~~VL~~is~~I~~ 1264 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVIEN-NRP--PPGW----------PSSGSIKFEDVVLRYRP---ELPPVLHGLSFEISP 1264 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccccC-CCC--CCCC----------CCCCcEEEEEEEEEeCC---CCCceecceeEEEcC
Confidence 4568899999999765543211000 000 0011 11235999999999942 234799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+++++||||++.+|.. |++|||.++.
T Consensus 1265 GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~--- 1337 (1622)
T PLN03130 1265 SEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN--- 1337 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC---
Confidence 9999999999999999999999999986 8999999998642 24679999999999988 9999997652
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..++ +...|+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1338 ---~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1338 ---EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 1122 234445554443 4568999986 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
...|.+.|++.. +++|+|+++|+++ .+ ..||+|++|++|++++.|++++++.
T Consensus 1410 e~~Iq~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1410 DALIQKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999874 4799999999964 44 5599999999999999999999863
No 301
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.8e-40 Score=338.90 Aligned_cols=214 Identities=29% Similarity=0.349 Sum_probs=193.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.++++++++.| +...+++||||+|++||++||+|+||||||||+++|.|.++|+ +|+|.++|++....
T Consensus 4 ~l~~~~itK~f-----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 4 ALEMRGITKRF-----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eEEEeccEEEc-----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHH
Confidence 58999999999 4688999999999999999999999999999999999999997 99999999975321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
+..||+|+|...|+|++||.||+.++..-......+.+..+++++++.+..||+-..|.+|+ +||-||||||.
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVE 150 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVE 150 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHH
Confidence 24689999999999999999999998654222234567778889999999999888888776 59999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|-++|.++|++|||||||+-|-|....++++.|++++++|+|||++||-. .|+.++|||+.+|+.|+++..-+
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999995 79999999999999999876655
No 302
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.7e-40 Score=315.34 Aligned_cols=196 Identities=28% Similarity=0.388 Sum_probs=155.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
++++||++.|..+....+.+|+|+||++++|++++|+||||||||||+++|+|+.+|. +|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------EEE
Confidence 4689999998421000136999999999999999999999999999999999999886 99999998 589
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHHHHH
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
|++|++.+++ .|++||+.+.... ... ...+.++.+++.+ ..++.+. ..+..||||||||++
T Consensus 70 ~~~q~~~l~~-~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~ 137 (204)
T cd03250 70 YVSQEPWIQN-GTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRIS 137 (204)
T ss_pred EEecCchhcc-CcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHH
Confidence 9999998885 5999999885321 111 1222333333321 1222232 246789999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
|||+|+.+|++++|||||+|||+.++..+.+ +++++.++|.|||++||++ ..+.. ||++++|++|+
T Consensus 138 laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 138 LARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999998 4666666689999999996 45665 99999999985
No 303
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-41 Score=344.21 Aligned_cols=249 Identities=25% Similarity=0.354 Sum_probs=200.9
Q ss_pred hHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEE
Q 010936 6 ASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLT 85 (497)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 85 (497)
-.+|+++++.++|+.-+.+ .+.+-....-.++|+|+++.|. +++++|+||||++.||+.+
T Consensus 508 DmEnmfdllkee~eVvd~P----------------~a~pl~~~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktv 567 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEVVDLP----------------GAPPLKVTQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTV 567 (790)
T ss_pred hHHHHHHHhhcCchhhcCC----------------CCCCccccCCeEEEEEeEEecC----CCCceeecceEEecCCcEE
Confidence 4688999999888764311 1111122344699999999995 5689999999999999999
Q ss_pred EEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010936 86 ALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 86 aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
||+||||+||||+|++|..+.+.. +|.|.+||++++. .++.||.||||..+|.+ |+..|+.|+..-..++.
T Consensus 568 AlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~Asnee 643 (790)
T KOG0056|consen 568 ALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEE 643 (790)
T ss_pred EEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHH
Confidence 999999999999999999998875 9999999998642 24679999999999987 99999999743221111
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010936 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
...+.+.+.+.+- .+++++.++|+||+. .-.|||||||||+|||+++.+|.+++|||.||+||..+.+.|...|.++
T Consensus 644 vyaAAkAA~IHdr--Il~fPegY~t~VGER-GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rl 720 (790)
T KOG0056|consen 644 VYAAAKAAQIHDR--ILQFPEGYNTRVGER-GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARL 720 (790)
T ss_pred HHHHHHHhhHHHH--HhcCchhhhhhhhhc-ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHH
Confidence 1111122222222 268899999999984 4459999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 241 ~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+. ++|.|++.|..+ . .--+|.|+++++|+|++.|..+|++.
T Consensus 721 ca-~RTtIVvAHRLS-T-ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 721 CA-NRTTIVVAHRLS-T-IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred hc-CCceEEEeeeeh-h-eecccEEEEEeCCeEeecCcHHHHHh
Confidence 87 689999999975 3 34699999999999999999988754
No 304
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=8.6e-40 Score=353.87 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=178.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++|++. .+|+||||++++|++++|+|||||||||||++|+|+.+|. +|+|.++|.++...
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHH
Confidence 588899872 1599999999999999999999999999999999999886 89999999875321
Q ss_pred --cCcEEEEcCCC---CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHH
Q 010936 127 --FGTAAYVTQDD---NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 127 --~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGer 200 (497)
++.++|++|++ .+++.+||.||+.................++.++++++.+||. +..++.+ ..||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~k 409 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQ 409 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHH
Confidence 24689999984 5888899999986431110010011222345688999999997 6667655 57999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
|||+||++|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++ .++.++||++++|++|+++..|+++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999988899999999996 6899999999999999999988776
Q ss_pred hH
Q 010936 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 489 ~~ 490 (510)
T PRK15439 489 AI 490 (510)
T ss_pred cC
Confidence 53
No 305
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.2e-39 Score=333.56 Aligned_cols=185 Identities=30% Similarity=0.516 Sum_probs=163.4
Q ss_pred EECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCH
Q 010936 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW 163 (497)
Q Consensus 87 IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~ 163 (497)
|+|||||||||||++|+|+++|+ +|+|.++|++... ..+.++|++|++.+++.+||+||+.|+...+ ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999886 9999999987532 2357999999999999999999999986532 2334
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 010936 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (497)
Q Consensus 164 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (497)
.+.+++++++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 44556788999999998877764 4579999999999999999999999999999999999999999999999775
Q ss_pred -CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 244 -GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 244 -g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+|+|++||++ .++..+||++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 89999999996 6889999999999999999999998864
No 306
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.6e-40 Score=308.89 Aligned_cols=174 Identities=38% Similarity=0.561 Sum_probs=149.7
Q ss_pred EEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----c
Q 010936 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----F 127 (497)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~ 127 (497)
+++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+.... .
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHH
Confidence 4688999883 357999999999999999999999999999999999999886 99999999875321 1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+.++|++| +++.+||.+..++. +..||||||||++|||
T Consensus 73 ~~i~~~~q-------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~qrl~lar 110 (180)
T cd03214 73 RKIAYVPQ-------------------------------------ALELLGLAHLADRP-----FNELSGGERQRVLLAR 110 (180)
T ss_pred HHHhHHHH-------------------------------------HHHHcCCHhHhcCC-----cccCCHHHHHHHHHHH
Confidence 23566665 56667776655553 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||++ .++.++||++++|++|++++.|
T Consensus 111 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 111 ALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999776 89999999996 5778999999999999987653
No 307
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-39 Score=304.54 Aligned_cols=231 Identities=27% Similarity=0.392 Sum_probs=199.8
Q ss_pred eEEEEEeEEEEEEccCCcc-cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---
Q 010936 50 ARLTWKDLTVMVTLSNGET-HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
+.|+++||++++. + +.||++||++|++||+.+|+||||||||||.++|+|.-.. ..++|+|.++|+++..
T Consensus 2 ~~L~I~dLhv~v~-----~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHVEVE-----GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEEEec-----CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCH
Confidence 3689999999993 4 5899999999999999999999999999999999998543 3469999999998532
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 201 (497)
.+..+...+|.|.=+|..|+.+.|..+............+....+++.++.+++.+ .+++.+.. ++||||||
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSGGEkK 151 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKK 151 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCcchHH
Confidence 23457889999999999999999998876543221112355677888999999987 67777764 89999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC--CeEEEeeCCeEEEEeCc
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF--DRLYLLSGGKTVYFGET 279 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~--D~v~~L~~G~iv~~G~~ 279 (497)
|..|+..++.+|++.+||||-||||..+-..|.+.+..++..|.+++++||.. .+.++. |+|.+|.+|+|+..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999999999999999993 688887 99999999999999999
Q ss_pred hhHHHHHHhcCCCC
Q 010936 280 SAAFEFFAQAGFPC 293 (497)
Q Consensus 280 ~~~~~~f~~~g~~~ 293 (497)
++...++..||.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 8888888888754
No 308
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.5e-39 Score=388.52 Aligned_cols=249 Identities=20% Similarity=0.252 Sum_probs=198.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|.+|+.++.+.+++..... ++ ...+..| +....|+++|++++|+. +...+|+||||+|++
T Consensus 1248 ~~~~s~eRi~~~~~~~~e~~~~~-~~--~~~~~~w----------p~~g~I~f~nVsf~Y~~---~~~~vL~~is~~I~~ 1311 (1522)
T TIGR00957 1248 TNIVAVERLKEYSETEKEAPWQI-QE--TAPPSGW----------PPRGRVEFRNYCLRYRE---DLDLVLRHINVTIHG 1311 (1522)
T ss_pred HHHHHHHHHHHHhcCCCCccccc-cC--CCCCCCC----------CCCCcEEEEEEEEEeCC---CCcccccceeEEEcC
Confidence 46789999999997665422100 00 0000011 11235999999999953 224699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+++++||||++.+|+. |++|||....
T Consensus 1312 GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~--- 1384 (1522)
T TIGR00957 1312 GEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS--- 1384 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc---
Confidence 9999999999999999999999999986 8999999998642 24679999999999998 9999996321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+. +.+.++++..++ ++..|+.+|+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1385 ---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1385 ---QYSD----EEVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred ---CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 1222 234555665554 3567999986 567799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
...|.+.|++.. +++|||+++|++. ....||+|++|++|++++.|++++++.
T Consensus 1457 e~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1457 DNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998864 4799999999963 456699999999999999999998764
No 309
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.6e-39 Score=385.38 Aligned_cols=244 Identities=26% Similarity=0.402 Sum_probs=190.0
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.|.+|++||.++++.+|..+. ... . .. .. .. ..|+++||++.|+.+ ..+++|+|+||++++
T Consensus 350 ~a~~a~~ri~~ii~~~~~~~~-~~~---~-------~~----~~-~~-~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~ 410 (1466)
T PTZ00265 350 KSLEATNSLYEIINRKPLVEN-NDD---G-------KK----LK-DI-KKIQFKNVRFHYDTR--KDVEIYKDLNFTLTE 410 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCCCC-CCC---C-------cc----CC-CC-CcEEEEEEEEEcCCC--CCCceeccceEEEcC
Confidence 588999999999987776431 000 0 00 00 01 159999999999521 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEEC-CEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN-GHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~-G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
|+++||+||||||||||+++|+|+++|. +|+|+++ |.++.. .++.++||+|++.+|+. ||+||+.++...
T Consensus 411 Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~ 486 (1466)
T PTZ00265 411 GKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYS 486 (1466)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCC
Confidence 9999999999999999999999999996 9999995 565421 23579999999999985 999999997421
Q ss_pred cC----------CC--------C-------------------------C-----CHHHHHHHHHHHHHHcCC-------C
Q 010936 156 RL----------PD--------K-------------------------M-----PWSEKRTLVERTIIEMGL-------Q 180 (497)
Q Consensus 156 ~~----------~~--------~-------------------------~-----~~~~~~~~v~~~l~~lgL-------~ 180 (497)
.. +. . + .....++.+.++++.+++ +
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp 566 (1466)
T PTZ00265 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566 (1466)
T ss_pred ccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCc
Confidence 00 00 0 0 000112345666666654 4
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHH
Q 010936 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVF 259 (497)
Q Consensus 181 ~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~ 259 (497)
+..||.+|. .+..||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++.+ +|+|+|+++|+++ .+
T Consensus 567 ~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i- 643 (1466)
T PTZ00265 567 DKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TI- 643 (1466)
T ss_pred cccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-
Confidence 556888886 5788999999999999999999999999999999999999999999999976 5899999999963 44
Q ss_pred hcCCeEEEeeCC
Q 010936 260 ELFDRLYLLSGG 271 (497)
Q Consensus 260 ~~~D~v~~L~~G 271 (497)
+.||+|++|++|
T Consensus 644 ~~aD~Iivl~~g 655 (1466)
T PTZ00265 644 RYANTIFVLSNR 655 (1466)
T ss_pred HhCCEEEEEeCC
Confidence 789999999986
No 310
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.3e-39 Score=352.23 Aligned_cols=232 Identities=22% Similarity=0.221 Sum_probs=183.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|++|+.++++.++..+. . + ... .. ....++++|+++.|+ +.+++|+|+|+++++
T Consensus 291 ~~~~a~~ri~~l~~~~~~~~~-~-----~--------~~~--~~--~~~~i~~~~v~f~y~----~~~~~l~~i~~~i~~ 348 (547)
T PRK10522 291 SAQVAFNKLNKLALAPYKAEF-P-----R--------PQA--FP--DWQTLELRNVTFAYQ----DNGFSVGPINLTIKR 348 (547)
T ss_pred HHHHHHHHHHHHhcccccccc-c-----c--------ccc--cC--cCceEEEEEEEEEeC----CCCeEEecceEEEcC
Confidence 577899999998754322110 0 0 000 00 112599999999995 234699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.++|+||||||||||+++|+|+++|. +|+|.+||.+... .++.++||+|++.+|+. |++|| .
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~---- 417 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G---- 417 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c----
Confidence 9999999999999999999999999986 9999999998542 23679999999998886 88877 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW--HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~ 234 (497)
+ . ..++.+.++++.+++.+..+. ++. ....||||||||++|||||+++|++|+||||||+||+.++..+.
T Consensus 418 -~-~----~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~ 489 (547)
T PRK10522 418 -K-P----ANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489 (547)
T ss_pred -C-c----hHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 0 1 123457788888888754332 211 13579999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 235 QTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 235 ~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
+.|.++.+ .|+|+|+++|++ +....||+|++|++|++++.
T Consensus 490 ~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 490 QVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99987654 589999999996 35778999999999999876
No 311
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.9e-39 Score=297.40 Aligned_cols=156 Identities=36% Similarity=0.500 Sum_probs=140.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC------
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
++++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHH
Confidence 46899999993 457999999999999999999999999999999999999886 8999999986431
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.++|++| ||||||||++|
T Consensus 73 ~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl~l 93 (163)
T cd03216 73 RRAGIAMVYQ-----------------------------------------------------------LSVGERQMVEI 93 (163)
T ss_pred HhcCeEEEEe-----------------------------------------------------------cCHHHHHHHHH
Confidence 1234677776 89999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
||||+.+|+++||||||+|||+.++..+.+.|++++++|.|+|++||++ .++.++||++++|++|++++
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999987799999999995 57888999999999999875
No 312
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.4e-38 Score=319.02 Aligned_cols=202 Identities=23% Similarity=0.345 Sum_probs=163.4
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...|+++|+++. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------
Confidence 345899999984 246999999999999999999999999999999999999886 89999988
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCCHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerq 201 (497)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+ ..++.++. .+..|||||||
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~q 166 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQRA 166 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHHH
Confidence 38999999988875 999999875321 11 11223333334322 12333332 45689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
|++|||+|+.+|++|||||||+|||+.++..+.+.+ +.+. ++.|||++||++ ..+ ..||++++|++|++++.|+++
T Consensus 167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~-~~~-~~~d~i~~l~~G~i~~~g~~~ 243 (282)
T cd03291 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFS 243 (282)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999865 5554 479999999996 455 689999999999999999987
Q ss_pred hHH
Q 010936 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
++.
T Consensus 244 ~~~ 246 (282)
T cd03291 244 ELQ 246 (282)
T ss_pred HHH
Confidence 754
No 313
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4e-39 Score=311.28 Aligned_cols=199 Identities=24% Similarity=0.308 Sum_probs=158.6
Q ss_pred EEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------
Q 010936 53 TWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------- 125 (497)
Q Consensus 53 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------- 125 (497)
.+.|+++.+. ..+.+|+|+||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.+...
T Consensus 2 ~~~~~~~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWG----SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecC----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccc
Confidence 4667888874 2367999999999999999999999999999999999999885 8999999986421
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCC
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-------DTVIGNWHLRGIS 196 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LS 196 (497)
.++.++|++|++.++ ..|++||+.+.... .. ....++++.++|.+.. ++..+ .++..||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS 142 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLS 142 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCC
Confidence 124689999999887 46999999875321 11 1233445555554322 22222 2467899
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ--TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
|||||||+||++|+.+|++|||||||+|||+.++..+++ +++.+.+.|.|+|++||++ ..+ ..||++++|++|.
T Consensus 143 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKL-QYL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCh-HHH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999999998 6666666689999999996 455 5799999999874
No 314
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-39 Score=300.90 Aligned_cols=166 Identities=38% Similarity=0.589 Sum_probs=146.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----C
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
++++|+++.|.. ....+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPG---RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHH
Confidence 468899998831 1136999999999999999999999999999999999999885 8999999987531 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
.+.++|++|++.+++ .|+.||+ |||||||||+||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~la 108 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIAIA 108 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHHHH
Confidence 346899999998776 5998886 899999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
++|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|||++||++ .++.. ||++++|++|+
T Consensus 109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 109 RALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999864 79999999996 56666 99999999884
No 315
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.6e-39 Score=382.58 Aligned_cols=214 Identities=21% Similarity=0.277 Sum_probs=182.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
-.|+++||+++|+. +...+|+||||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1307 G~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred CeEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHH
Confidence 35999999999952 2346999999999999999999999999999999999999986 8999999998642
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSg 197 (497)
.++.++||||++.+|+. ||+|||.... ..+. +.+.++++..+|. +..|+.+|+ ....|||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSg 1448 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSV 1448 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCH
Confidence 24679999999999987 9999996421 1222 3456666666653 457899986 6678999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~-p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
|||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+++|++ .....||+|++|++|++++.
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEE
Confidence 999999999999995 89999999999999999999999998864 479999999996 35677999999999999999
Q ss_pred eCchhHHH
Q 010936 277 GETSAAFE 284 (497)
Q Consensus 277 G~~~~~~~ 284 (497)
|++++++.
T Consensus 1526 Gt~~eLl~ 1533 (1560)
T PTZ00243 1526 GSPRELVM 1533 (1560)
T ss_pred CCHHHHHh
Confidence 99998753
No 316
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-39 Score=348.28 Aligned_cols=209 Identities=22% Similarity=0.333 Sum_probs=175.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
|+++|+++.| +++++|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. ..++
T Consensus 2 l~i~~ls~~~-----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQF-----GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEe-----CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999999 3467999999999999999999999999999999999999886 899999873 3589
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhh-c-----------cCCC-C----------------CCHHHHHHHHHHHHHHcCCCcc
Q 010936 132 YVTQDDNLIGTLTVRETISYSAR-L-----------RLPD-K----------------MPWSEKRTLVERTIIEMGLQDC 182 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~-~-----------~~~~-~----------------~~~~~~~~~v~~~l~~lgL~~~ 182 (497)
|++|++.+++.+||+|++.++.. . ..+. . ....+.+.++.++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999989999999999987531 0 0000 0 0001223568889999999754
Q ss_pred c-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc
Q 010936 183 A-DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL 261 (497)
Q Consensus 183 ~-~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~ 261 (497)
. +. .+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||++ ..+.++
T Consensus 148 ~~~~-----~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~~ 218 (530)
T PRK15064 148 QHYG-----LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNSV 218 (530)
T ss_pred HhcC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHhh
Confidence 3 33 3457999999999999999999999999999999999999999999863 589999999995 678899
Q ss_pred CCeEEEeeCCeE-EEEeCchhHH
Q 010936 262 FDRLYLLSGGKT-VYFGETSAAF 283 (497)
Q Consensus 262 ~D~v~~L~~G~i-v~~G~~~~~~ 283 (497)
||+|++|++|++ ++.|++++..
T Consensus 219 ~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 219 CTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred cceEEEEeCCEEEEecCCHHHHH
Confidence 999999999999 4789887654
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5.5e-39 Score=297.92 Aligned_cols=163 Identities=33% Similarity=0.488 Sum_probs=144.1
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
|+++|+++.|. +.+.+|+|+||++++|++++|+||||||||||+++|+|+++|. +|+|.++|. +.++
T Consensus 1 i~~~~~~~~~~----~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATP----DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcC----CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceEE
Confidence 46889999883 2356999999999999999999999999999999999999885 899999873 5689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
|++|++.++ .+||+||+.+. .+..||||||||++|||||+.
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHc
Confidence 999998765 56999998652 124699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
+|++++|||||+|||+.++..+.+.|+++ +.|+|++||++ . ....||++++|++|
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~-~-~~~~~d~i~~l~~~ 163 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP-S-LWKFHDRVLDLDGE 163 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh-h-HHhhCCEEEEEcCC
Confidence 99999999999999999999999999886 58999999996 3 45799999999865
No 318
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1e-38 Score=348.86 Aligned_cols=210 Identities=24% Similarity=0.311 Sum_probs=175.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++||++.|. .++++|+||||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~----~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVP----PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeC----CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3699999999992 1467999999999999999999999999999999999999885 899999752 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhc-c------------CCCCCC--------------------HHHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARL-R------------LPDKMP--------------------WSEKRTLVERTIIE 176 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~-~------------~~~~~~--------------------~~~~~~~v~~~l~~ 176 (497)
++||+|++.+++.+||.||+.++... . ...... ..+...++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 99999999999999999999875320 0 000000 00123567888999
Q ss_pred cCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 010936 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (497)
Q Consensus 177 lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~ 256 (497)
+||.. .++.+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||++ .
T Consensus 152 ~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~ 221 (556)
T PRK11819 152 LRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-Y 221 (556)
T ss_pred CCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-H
Confidence 99953 55544 5799999999999999999999999999999999999999999998872 5999999996 6
Q ss_pred HHHhcCCeEEEeeCCeEE-EEeCchhH
Q 010936 257 EVFELFDRLYLLSGGKTV-YFGETSAA 282 (497)
Q Consensus 257 ~i~~~~D~v~~L~~G~iv-~~G~~~~~ 282 (497)
.+..+||+|++|++|+++ +.|+.++.
T Consensus 222 ~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 888999999999999986 77887654
No 319
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=350.86 Aligned_cols=219 Identities=26% Similarity=0.353 Sum_probs=189.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.++++|+++.|..+. +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHH
Confidence 589999999994211 1356999999999999999999999999999999999999886 8999999987532
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH
Q 010936 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 201 (497)
.++.++|++|++.+++.+|+.||+.+..... .....+.++++.++++.+||.+..|+.. ..|||||+|
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq~q 151 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQQQ 151 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHHHH
Confidence 1356999999999999999999999865432 2234455667889999999988777654 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++ +. .+.||++++|++|++++.|+.++
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~-~~-~~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP-QV-AAQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCH-HH-HHhCCEEEEEECCEEEeecCccc
Confidence 99999999999999999999999999999999999999987799999999996 44 46799999999999999999887
Q ss_pred HH
Q 010936 282 AF 283 (497)
Q Consensus 282 ~~ 283 (497)
..
T Consensus 230 ~~ 231 (648)
T PRK10535 230 KV 231 (648)
T ss_pred cc
Confidence 64
No 320
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-38 Score=303.38 Aligned_cols=190 Identities=22% Similarity=0.293 Sum_probs=159.5
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-CcCcE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTA 130 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~~i 130 (497)
++++|+++.|. .+.+++ +||++++||+++|+|+||||||||+++|+|+.+|. +|+|.++|.+... ..+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhhE
Confidence 78999999983 344555 99999999999999999999999999999999886 9999999987532 12458
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 210 (497)
+|++|++.+++.+||.||+.+..... . ..+.+.++++.+++.+..++.+ +.||||||||++|||||+
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARLIA 139 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHHHh
Confidence 99999988888899999998865332 1 1245678889999987666644 579999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE
Q 010936 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v 265 (497)
.+|++++|||||+|||+.++..+.+.|+++.++|.|+|++||++. .+ ..+|-|
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 999999999999999999999999999877667899999999963 33 346654
No 321
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=8e-39 Score=308.59 Aligned_cols=195 Identities=21% Similarity=0.230 Sum_probs=161.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEE-ECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-LNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~-~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
++|+||||+|++|++++|+||||||||||+++|+|+++|+ +|+|. ++|... .+.+++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999999886 89997 777532 13345678899999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
+.+....+ .....+. .+.+.+.++|+...++.+ +.||||||||++||+||+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99876543 1222222 223445567877777655 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHh
Q 010936 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (497)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 288 (497)
++..+.+.|.+..+ ++|+|++||++ .++..+||++++|++|++++.|+.+++..+++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866544 46899999996 578889999999999999999999988776654
No 322
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-38 Score=344.10 Aligned_cols=215 Identities=23% Similarity=0.314 Sum_probs=176.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--- 126 (497)
..|+++|+++.+ +.+|+||||++++||+++|+||||||||||+++|+|+.+|. +|+|.++|.++...
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHH
Confidence 368999999863 35899999999999999999999999999999999999886 89999999875321
Q ss_pred ---cCcEEEEcCCC---CCCCCCCHHHHHHHHh-hccCC-CC-CCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 010936 127 ---FGTAAYVTQDD---NLIGTLTVRETISYSA-RLRLP-DK-MPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGIS 196 (497)
Q Consensus 127 ---~~~i~yv~Q~~---~l~~~lTV~e~l~~~~-~~~~~-~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 196 (497)
.+.++|++|++ .+++.+|+.+|..+.. ..... .. ......++.+.++++.+++. +..++. +.+||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 393 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLS 393 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 23489999985 4788898887743321 00000 01 12233446678899999995 445664 45799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
|||||||+||++|+.+|+||||||||+|||+.++..+++.|+++.++|.|||++||++ .++.++||++++|++|+++..
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999999995 688999999999999999987
Q ss_pred eCch
Q 010936 277 GETS 280 (497)
Q Consensus 277 G~~~ 280 (497)
++.+
T Consensus 473 ~~~~ 476 (491)
T PRK10982 473 VDTK 476 (491)
T ss_pred Eccc
Confidence 7553
No 323
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.6e-38 Score=378.71 Aligned_cols=212 Identities=25% Similarity=0.318 Sum_probs=182.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||+++|.. +.+.+|+||||+|++||.+||+|+||||||||+++|+|+++ . +|+|++||.++..
T Consensus 1216 g~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHH
Confidence 35999999999953 24679999999999999999999999999999999999986 3 8999999998642
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSg 197 (497)
.++.++||||++.+|+. ||+|||.... ..+ ++.+.++++.++|. +..|+.+|+ ....|||
T Consensus 1289 ~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSg 1356 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSN 1356 (1490)
T ss_pred HHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCH
Confidence 24679999999999998 9999996431 112 24466677777663 467899986 5667999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+++|++. ....||+|++|++|++++.|
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 4799999999963 45569999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
++++++
T Consensus 1434 ~p~~Ll 1439 (1490)
T TIGR01271 1434 SIQKLL 1439 (1490)
T ss_pred CHHHHH
Confidence 998876
No 324
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.9e-38 Score=346.66 Aligned_cols=209 Identities=22% Similarity=0.264 Sum_probs=169.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.|+......+.+|+|+|+++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 359999999999531111246999999999999999999999999999999999999986 9999999998642
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-ccCcccCCCCHHHHHHH
Q 010936 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV-IGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-vg~~~~~~LSgGerqRv 203 (497)
.++.++||+|++.+|.. |+++|+. + ...++.+.++++.+++.+..+.. -|......||||||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 13568999999999876 8888831 1 11234577788888886543321 11112357999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR-CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
+|||||+.+|++|||||||++||+.++..+.+.+. .+...|+|+|++||++. ..+.||+|++|++|++++.
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998664 45556899999999963 5678999999999999753
No 325
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=309.17 Aligned_cols=191 Identities=29% Similarity=0.390 Sum_probs=167.5
Q ss_pred eEEEEEeEEEEEEccCC--cc--cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC
Q 010936 50 ARLTWKDLTVMVTLSNG--ET--HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~--~~--~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~ 125 (497)
..++++||++.|..+.+ .. ..+++||||++++||+++|+|+||||||||-|+|.|+++|+ +|+|+++|+++..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhh
Confidence 35899999999976421 11 47999999999999999999999999999999999999996 9999999987432
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.. ..+..+++.++|+.+||.. .++ .++++||||||||++
T Consensus 80 ~~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQRi~ 119 (268)
T COG4608 80 LS-----------------------------------KEERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQRIG 119 (268)
T ss_pred cc-----------------------------------hhHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhhhHH
Confidence 11 2345577999999999864 333 378999999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||||+.+|+++++|||+|+||...+.+++++|+++.++ |.|.++++||. +.+..+||||.+|..|++++.|+.+++.
T Consensus 120 IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 120 IARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHh
Confidence 999999999999999999999999999999999999875 99999999995 6889999999999999999999998875
Q ss_pred H
Q 010936 284 E 284 (497)
Q Consensus 284 ~ 284 (497)
.
T Consensus 199 ~ 199 (268)
T COG4608 199 S 199 (268)
T ss_pred h
Confidence 3
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.8e-38 Score=345.11 Aligned_cols=211 Identities=25% Similarity=0.306 Sum_probs=173.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..++++||++.|. +.+++|+|+||+|++|++++|+|||||||||||++|+|+.+|+ +|+|.+++. ..
T Consensus 3 ~~i~~~nls~~~~----~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVP----PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG------IK 69 (552)
T ss_pred EEEEEeeEEEecC----CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CE
Confidence 3689999999993 1467999999999999999999999999999999999999885 899999752 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhcc-------------CCCCCCH--------------------HHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLR-------------LPDKMPW--------------------SEKRTLVERTIIE 176 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~-------------~~~~~~~--------------------~~~~~~v~~~l~~ 176 (497)
++||+|++.+++.+||.||+.++.... ....... .....++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 999999999999999999998753210 0000000 0012456677888
Q ss_pred cCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 010936 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (497)
Q Consensus 177 lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~ 256 (497)
+|+.. .++. +..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++ .
T Consensus 150 ~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 150 LRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 88853 4554 4579999999999999999999999999999999999999999999876 35999999995 6
Q ss_pred HHHhcCCeEEEeeCCeEE-EEeCchhHH
Q 010936 257 EVFELFDRLYLLSGGKTV-YFGETSAAF 283 (497)
Q Consensus 257 ~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (497)
.+..+||++++|++|+++ +.|+.++..
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 788999999999999976 778877644
No 327
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-38 Score=344.77 Aligned_cols=203 Identities=24% Similarity=0.334 Sum_probs=173.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++|+++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. +.
T Consensus 318 ~~l~~~~l~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGF-----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEee-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 369999999999 3467999999999999999999999999999999999999886 899999874 46
Q ss_pred EEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHH
Q 010936 130 AAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 130 i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
++|++|++. +++.+||.|++.+... . . ..++++.++++.+|+. +..++.+ .+|||||||||+||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la 450 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQ---E-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFG 450 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhcc---C-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHH
Confidence 899999864 5667999999865311 1 1 1134578899999994 5566644 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-EEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (497)
++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||++ ..+..+||++++|++|+++ +.|+++++.
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999999999999999999999999999999886 35999999995 6888999999999999998 778876643
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.7e-38 Score=311.38 Aligned_cols=189 Identities=23% Similarity=0.311 Sum_probs=157.0
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCH
Q 010936 71 VLEGLTGYAE-----PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 71 iL~~vs~~i~-----~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV 145 (497)
.++|+++++. +||+++|+||||||||||+++|+|+++|. +|+|.++|. .++|++|+...++.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCCCH
Confidence 5667777775 79999999999999999999999999886 899999984 58999999887778899
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGL 225 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgL 225 (497)
+|++.+...... . ......++++.++|.+..++.+ ..|||||||||+||++|+.+|+++||||||++|
T Consensus 79 ~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 79 RDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred HHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999976533210 0 1123577889999987777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE--EEeCchhH
Q 010936 226 DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV--YFGETSAA 282 (497)
Q Consensus 226 D~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~~ 282 (497)
|+.++..+.+.|+++++ .|+|||++||++ ..+..+||++++|+++..+ ..+++.++
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 99999999999999976 489999999995 6788899999999765433 33444443
No 329
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-38 Score=316.66 Aligned_cols=227 Identities=27% Similarity=0.373 Sum_probs=198.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC--CCceeEEEECCEecC----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN--AFLSGTILLNGHKTK---- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~---- 124 (497)
.++++||++.+.... +...++++|||++++||.+||+|+||||||-..+.++|+++.. ...+|+|.|+|.+.-
T Consensus 6 lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 6 LLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred ceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 589999999996543 4678999999999999999999999999999999999998652 345899999998731
Q ss_pred -----CCcCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 -----LSFGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 -----~~~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.+-.+|+++||+| .+.|-.|+..-+.-...++ .+++.++.++++.++|+.+|+.+-.... +.||++|||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSG 160 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSG 160 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCc
Confidence 1224799999997 4678889988887776654 3567788889999999999998765443 459999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||||||.||+||+++|++||.||||++||..-+.+|+++|++|.++ |..++++|||. .-+.+++|||++|.+|++++.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeec
Confidence 9999999999999999999999999999999999999999999875 99999999995 688999999999999999999
Q ss_pred eCchhHH
Q 010936 277 GETSAAF 283 (497)
Q Consensus 277 G~~~~~~ 283 (497)
|+.++++
T Consensus 240 ~~t~~lF 246 (534)
T COG4172 240 GTTETLF 246 (534)
T ss_pred CcHHHHh
Confidence 9998876
No 330
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-38 Score=341.87 Aligned_cols=214 Identities=23% Similarity=0.343 Sum_probs=172.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|+.++. .+|+|+++|++...
T Consensus 259 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSY-----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEE-----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 369999999999 3456999999999999999999999999999999999987541 28999999975321
Q ss_pred --CcCcEEEEcCCCCCCC--CCCHHHHHHHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 010936 126 --SFGTAAYVTQDDNLIG--TLTVRETISYSARL--RLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~--~lTV~e~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (497)
.++.++|++|++.+++ ..++.+++.++... ....... ...+++++++++.+||.+ ..++.+ .+||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHH
Confidence 1246999999876543 35777776543211 0001111 223456889999999986 666654 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCChHHHh-cCCeEEEeeCCeEEEE
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFE-LFDRLYLLSGGKTVYF 276 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~tH~~~~~i~~-~~D~v~~L~~G~iv~~ 276 (497)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++ +++.+ +||++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998775 5799999996 56776 5999999999998765
Q ss_pred e
Q 010936 277 G 277 (497)
Q Consensus 277 G 277 (497)
-
T Consensus 485 ~ 485 (490)
T PRK10938 485 V 485 (490)
T ss_pred e
Confidence 3
No 331
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.8e-40 Score=293.64 Aligned_cols=192 Identities=26% Similarity=0.449 Sum_probs=168.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCC
Q 010936 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIG 141 (497)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~ 141 (497)
.+..+|+++||++.+||..+|.||||||||||+|+++.+++|+ +|.+++.|++... .+.+++|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 4578999999999999999999999999999999999999996 9999999998542 2457999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDE 220 (497)
. ||++|+.|....+... + .+.+..++|+++++.+. .++ .+..||||||||++|+|.|..-|+||+|||
T Consensus 91 ~-tVeDNlifP~~~r~rr--~---dr~aa~~llar~~l~~~~L~k-----~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRR--P---DRAAALDLLARFALPDSILTK-----NITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred c-chhhccccchHHhccC--C---ChHHHHHHHHHcCCchhhhcc-----hhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 8 9999999987765321 1 23557788999999764 343 455799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 221 PTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|||+||+.+.+.|-++|.++. .+...++.+||++ ++..+.+|+++-+..|++
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 999999999999999999987 4689999999996 678899999999999876
No 332
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.2e-39 Score=308.11 Aligned_cols=206 Identities=26% Similarity=0.363 Sum_probs=181.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----cCcEEEEc-CCCCCCCCC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVT-QDDNLIGTL 143 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~-Q~~~l~~~l 143 (497)
..+++||||+|++|++++++|||||||||+||+|+|++.|+ +|.|.++|..+... -+.+++|+ |...+...+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 45899999999999999999999999999999999999996 99999999864321 14566654 446677778
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 010936 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (497)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTs 223 (497)
.+.|.+......+ .++.++.+++.+.+.+.++|+...+.++ +.||-|||.|+.||.+|+++|+||||||||-
T Consensus 114 p~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 114 PALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 8899888876665 5677888899999999999988777755 6799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHH
Q 010936 224 GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (497)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (497)
|||..++..|.+.|++..+ .+.||+.+||+. +.+..+||||++|+.|+++|.|+.+++.+-|
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999987 599999999995 6899999999999999999999999887654
No 333
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.5e-37 Score=337.93 Aligned_cols=204 Identities=23% Similarity=0.308 Sum_probs=170.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++|+++.| +++.+|+||||+|++|++++|+||||||||||+++|+|+++|. +|+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSF-----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEE-----CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 469999999998 3467999999999999999999999999999999999999886 899999542 25
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 010936 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 130 i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+||++|+. .+++.+||.||+.+...... .... ...+.++++.+|+.+ ..++.+ .+|||||||||+||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHH
Confidence 89999996 78889999999998753221 1111 123456899999964 456644 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC-CeEE-EEeCchh
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETSA 281 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~~ 281 (497)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++ .++..+||++++|++ |++. +.|+.++
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 9999999999999999999999999999999872 4 899999995 688999999999985 7876 4565543
No 334
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-38 Score=300.03 Aligned_cols=217 Identities=27% Similarity=0.367 Sum_probs=184.1
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--- 124 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--- 124 (497)
....|+++|+++.+ +++.||+|+|++|++||-.+|+|||||||||||++++|...|+ +|.+.+.|+...
T Consensus 28 ~~~li~l~~v~v~r-----~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~ 99 (257)
T COG1119 28 NEPLIELKNVSVRR-----NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGE 99 (257)
T ss_pred CcceEEecceEEEE-----CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCc
Confidence 34569999999999 5789999999999999999999999999999999999999886 899999998632
Q ss_pred ---CCcCcEEEEcCC--CCCCCCCCHHHHHHHHhh--ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 ---LSFGTAAYVTQD--DNLIGTLTVRETISYSAR--LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ---~~~~~i~yv~Q~--~~l~~~lTV~e~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
..+++||||.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|+.++ .||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-----~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-----SLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh-----hcCH
Confidence 224679999754 344566788887764432 1111112234556778899999999999998776 6999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD--GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
||||||-|||||+.+|.+||||||++|||...+..+++.|.+++.. +.++|++||++ +++...+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999874 88999999996 78999999999999999999
Q ss_pred EeC
Q 010936 276 FGE 278 (497)
Q Consensus 276 ~G~ 278 (497)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
No 335
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.1e-37 Score=336.94 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=169.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..++++|+++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|+.+|. +|+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~-----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGF-----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEE-----CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------eE
Confidence 369999999998 3467999999999999999999999999999999999999886 899999542 25
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHH
Q 010936 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 130 i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
++|++|++ .+++.+||.||+.++.... ..... ...+.++++.+||.+ ..++.+ ..|||||||||+||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHH
Confidence 89999996 4788899999999875321 11111 123557899999964 456544 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC-CeEE-EEeCch
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG-GKTV-YFGETS 280 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~-G~iv-~~G~~~ 280 (497)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++ ..+..+||++++|++ |+++ +.|+.+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 9999999999999999999999999999999872 3 899999995 678899999999986 5776 445543
No 336
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-37 Score=368.82 Aligned_cols=237 Identities=24% Similarity=0.295 Sum_probs=187.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|.+||.++++.++.... . .+ . . . .....++++|+++.|+.. .++++|+|+|+++++
T Consensus 583 ~a~~s~~Ri~~~L~~~~~~~~---~--~~---~-----~---~--~~~~~I~~~~vsF~y~~~--~~~~vL~~inl~i~~ 642 (1495)
T PLN03232 583 NANVSLQRIEELLLSEERILA---Q--NP---P-----L---Q--PGAPAISIKNGYFSWDSK--TSKPTLSDINLEIPV 642 (1495)
T ss_pred HHHHHHHHHHHHHcCcccccc---c--cC---C-----c---C--CCCCcEEEEeeEEEcCCC--CCCceeeeeEEEEcC
Confidence 578999999999976543211 0 00 0 0 0 011259999999999521 236799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
|+.++|+||||||||||+++|+|.++|. +|.+. ..++.++||+|++.+|+. ||+|||.|+...
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~-------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~------ 705 (1495)
T PLN03232 643 GSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV-------VIRGSVAYVPQVSWIFNA-TVRENILFGSDF------ 705 (1495)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE-------EecCcEEEEcCccccccc-cHHHHhhcCCcc------
Confidence 9999999999999999999999999985 67553 123579999999999987 999999998421
Q ss_pred CHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 010936 162 PWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (497)
Q Consensus 162 ~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~ 234 (497)
+. ++.+++++..+ |++..+|.||+ ....||||||||++||||+.++|+|+|||||||+||+.++..++
T Consensus 706 ~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe-~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~ 780 (1495)
T PLN03232 706 ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGE-RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780 (1495)
T ss_pred CH----HHHHHHHHHhCCHHHHHhCCCCCCceecC-CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 12 23444444444 45667899997 46679999999999999999999999999999999999999887
Q ss_pred HH-HHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 235 QT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 235 ~~-L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+. ++.+ .+|+|+|++||++. ....||+|++|++|++++.|+.+++.
T Consensus 781 ~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 781 DSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred HHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 65 4443 35899999999963 56789999999999999999998875
No 337
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3e-37 Score=337.83 Aligned_cols=199 Identities=24% Similarity=0.289 Sum_probs=172.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..++++|+++.|. +. .|+++||++++||+++|+||||||||||+++|+|+++|+ +|+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~-----~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLG-----DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEEC-----CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------ee
Confidence 4699999999882 22 599999999999999999999999999999999999886 8999986 15
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 209 (497)
++|++|+..+++.+||+|++.+..... .. ...+.++++.++|.+..++.+ .+|||||||||+||++|
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL 468 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACL 468 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHH
Confidence 899999988888999999998753211 11 134678999999987777755 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||+ .++..+||++++|+ |++...|...
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-CcceeeeecC
Confidence 9999999999999999999999999999999874 89999999995 67889999999996 5777777643
No 338
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-38 Score=287.74 Aligned_cols=219 Identities=24% Similarity=0.387 Sum_probs=191.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC-EecCC---
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKL--- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G-~~~~~--- 125 (497)
..++++|+|+++ +...+|+|+||++.+||+-+|+|||||||||+|++|+|..+|. +|+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF-----~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSF-----GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEE-----cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCH
Confidence 468999999999 5688999999999999999999999999999999999999885 89999999 44321
Q ss_pred ---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 126 ---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD-----KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
.+..||--||.|..|..+||+|||..+.....+- .....+.+.+++++|...||.+..|...+ .||-
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~LSH 150 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LLSH 150 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hhcc
Confidence 2345788999999999999999999986532110 01123456789999999999999888765 5999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||++.|++-++++|++|+||||++|+--.......++|+.++. .++|+++.|| ...+.+++|+|-+|++|.+...|
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHD-M~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHD-MGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEecc-HHHHHHhhheeEEEeccceeecc
Confidence 999999999999999999999999999999999999999999976 5899999999 47899999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+.+++.
T Consensus 229 sld~v~ 234 (249)
T COG4674 229 SLDEVQ 234 (249)
T ss_pred cHHHhh
Confidence 988763
No 339
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.2e-37 Score=366.99 Aligned_cols=236 Identities=23% Similarity=0.301 Sum_probs=189.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|++||.++++.++.... + .+ ... .....++++|+++.|+.. .++++|+|+|+++++
T Consensus 583 ~a~~s~~RI~~~L~~~e~~~~---~--~~--------~~~-----~~~~~I~~~nvsf~y~~~--~~~~vL~~inl~i~~ 642 (1622)
T PLN03130 583 NANVSLKRLEELLLAEERVLL---P--NP--------PLE-----PGLPAISIKNGYFSWDSK--AERPTLSNINLDVPV 642 (1622)
T ss_pred HHHHHHHHHHHHHcCcccccc---c--CC--------ccc-----CCCCceEEEeeEEEccCC--CCCceeeceeEEecC
Confidence 578899999999975433211 0 00 000 001249999999999531 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCce-eEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLS-GTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~-G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
|++++|+||||||||||+++|+|.++|. + |+|.+. +.++||+|++.+++. ||+|||.|+...
T Consensus 643 Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~Iayv~Q~p~Lfng-TIreNI~fg~~~----- 705 (1622)
T PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GTVAYVPQVSWIFNA-TVRDNILFGSPF----- 705 (1622)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------CeEEEEcCccccCCC-CHHHHHhCCCcc-----
Confidence 9999999999999999999999999885 8 899864 468999999999986 999999997431
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 010936 161 MPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i 233 (497)
+ +++.+++++..+| ++..+|.||+ ....|||||||||+||||+.++|+|+|||||||+||+.+...+
T Consensus 706 -d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe-~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I 779 (1622)
T PLN03130 706 -D----PERYERAIDVTALQHDLDLLPGGDLTEIGE-RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779 (1622)
T ss_pred -c----HHHHHHHHHHhCcHHHHHhCCCcccccccC-CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHH
Confidence 1 2334555555444 4567899997 4667999999999999999999999999999999999999988
Q ss_pred HH-HHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 234 TQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 234 ~~-~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
.+ .++.+. +|+|+|++||++ .....||+|++|++|++++.|+.+++.
T Consensus 780 ~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 780 FDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 75 555543 589999999996 357789999999999999999998875
No 340
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.3e-37 Score=342.51 Aligned_cols=198 Identities=21% Similarity=0.309 Sum_probs=161.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.++++|+++.++ +++.+|+|+||++++||+++|+||||||||||+++|+|++++. +|+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~----~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTP----NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECC----CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCcE
Confidence 599999999884 2357999999999999999999999999999999999999875 89998864 3569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CcccCCCCHHHHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG----NWHLRGISGGERRRVSIA 206 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRv~IA 206 (497)
+||+|++.+++. |++||+.++........ ....++.+.++++.+++.+..++..| ...+..||||||||++||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 999999998887 99999988643210000 00112456788999998765443221 013468999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|||+++|+++||||||+|||+.++..+.+.+++ .|+|+|+++|++. ..+.||++++|+
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 999999999999999999999999999998876 3899999999963 468899999997
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-37 Score=337.78 Aligned_cols=202 Identities=27% Similarity=0.356 Sum_probs=171.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++||++.| +++.+|+|+||+|++|+++||+|||||||||||++|+|.++|+ +|+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y-----~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGY-----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEe-----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------EE
Confidence 469999999999 3467999999999999999999999999999999999999886 899999742 25
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHH
Q 010936 130 AAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 130 i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
+||++|+. .+.+..|+.+++... . .......+.++|..+++.. ..++.+ ..|||||||||+||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~---~------~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La 442 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARL---A------PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLA 442 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHh---C------chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHH
Confidence 89999974 355667888776421 1 1112356788999999963 566655 46999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-EEeCchhHH
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (497)
++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+ ..+..+||++++|++|+++ +.|+.++..
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999999987 34 999999995 6888999999999999997 788887753
No 342
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.5e-37 Score=303.46 Aligned_cols=198 Identities=25% Similarity=0.319 Sum_probs=163.5
Q ss_pred eEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecC
Q 010936 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTK 124 (497)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~-----------~~G~~~~ 124 (497)
+++++|. ..+.+|+|+| .+++|++++|+|||||||||||++|+|+++|+ +|+|+ ++|.+..
T Consensus 5 ~~~~~y~----~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYG----PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred Ccceeec----CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhh
Confidence 5677773 2236999999 59999999999999999999999999999986 99996 7787642
Q ss_pred C-----C--cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH
Q 010936 125 L-----S--FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 125 ~-----~--~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 197 (497)
. . ...++|++|...+++. ++.+++.+... ....+..+.++++.+||.+..++.+ ..|||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 142 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNI-----DQLSG 142 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 1 1 1237899999888874 88888876421 1223456788999999987666644 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+..+||++++|+ |++.+.|
T Consensus 143 G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 143 GELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999999999999987789999999995 67888999999995 5565543
No 343
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2e-36 Score=274.42 Aligned_cols=144 Identities=29% Similarity=0.441 Sum_probs=132.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
++++|+++.+. +..+|+++||++++||+++|+||||||||||+++|+|+++|. +|+|+++|. ..++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYG-----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEEC-----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe------EEEE
Confidence 46889999883 346999999999999999999999999999999999999885 999999985 3689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 211 (497)
|++| ||+||+||++|||||+.
T Consensus 67 ~~~~-----------------------------------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 67 YFEQ-----------------------------------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred EEcc-----------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 9998 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+|++++|||||+|||+.++..+.+.|+++ +.|+|++||++ +++..+||++++|++|+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999887 47999999995 67888999999999985
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.7e-36 Score=334.35 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=170.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++||++.| +++++|+|+||+|++|++++|+|||||||||||++|+|+++|+ +|+|.+ |.+ -.
T Consensus 318 ~~l~~~~l~~~~-----~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~-----~~ 383 (635)
T PRK11147 318 IVFEMENVNYQI-----DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK-----LE 383 (635)
T ss_pred ceEEEeeeEEEE-----CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-----cE
Confidence 469999999998 3467999999999999999999999999999999999999885 899998 432 25
Q ss_pred EEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHH
Q 010936 130 AAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 130 i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
++|++|+. .+++.+||.||+.+..... ... .....+.+++..+++. +..++.+ ..|||||||||+||+
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la~ 453 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHHH
Confidence 89999985 5889999999998764211 011 1134577889999985 4566655 479999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee-CCeEEE-EeCchh
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS-GGKTVY-FGETSA 281 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~-~G~iv~-~G~~~~ 281 (497)
+|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||. ..+..+||++++|+ +|++.. .|+-++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999999876 45999999995 67889999999998 899865 455444
No 345
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=7.6e-37 Score=348.53 Aligned_cols=222 Identities=27% Similarity=0.445 Sum_probs=202.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..+..+|+++.|... +.+++++|+.|++||+.|++|+|||||||++|+|+|..+|+ +|+++++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~----~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK----DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecch----hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccch
Confidence 458899999999421 12999999999999999999999999999999999999986 9999999987532
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 126 --SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
.++.+||+||.+.+++.||.+|++.+.++++ +++..+.++.++.+++.++|.+.+|+.++ .+|||+|||+
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkL 707 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRL 707 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhH
Confidence 3467999999999999999999999999987 56777788889999999999999999776 5999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
++|.||+.+|++++|||||+|+||.+++.+++++.+++++|+.||++||. .+|...+|||+.+|.+|++...|+++++.
T Consensus 708 s~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 708 SFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 99999999999999999999999999999999999999988899999999 58999999999999999999999999998
Q ss_pred HHHH
Q 010936 284 EFFA 287 (497)
Q Consensus 284 ~~f~ 287 (497)
..|.
T Consensus 787 srfG 790 (885)
T KOG0059|consen 787 SRYG 790 (885)
T ss_pred hhcC
Confidence 7664
No 346
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.9e-36 Score=284.56 Aligned_cols=218 Identities=20% Similarity=0.244 Sum_probs=192.0
Q ss_pred EEEEEeEEEEEEcc-------------------CCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC
Q 010936 51 RLTWKDLTVMVTLS-------------------NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111 (497)
Q Consensus 51 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~ 111 (497)
.|+++||++.|+.. +.....+|+||||++++||.+||+|+||||||||||+|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 47788888877642 123457999999999999999999999999999999999999996
Q ss_pred ceeEEEECCEecCCCcCcEEEEcC-CCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 010936 112 LSGTILLNGHKTKLSFGTAAYVTQ-DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (497)
Q Consensus 112 ~~G~I~~~G~~~~~~~~~i~yv~Q-~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (497)
+|+|.++|+-. ++.. ...+.|.+|.+||+.+...+. +++.++.+++++++++.-+|.+..|.+|
T Consensus 81 -~G~v~v~G~v~--------~li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 -SGKVKVTGKVA--------PLIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred -CceEEEcceEe--------hhhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 99999999632 1111 234557899999999987764 6778899999999999999999999876
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+.+|.||+-|++.|.|...+|+|||+||-.+-.|+.=+....+.+.++.+++.|||++||++ ..+.++||++++|++
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~ 222 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEH 222 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeC
Confidence 57999999999999999999999999999999999999999999999988889999999995 789999999999999
Q ss_pred CeEEEEeCchhHHHHHHh
Q 010936 271 GKTVYFGETSAAFEFFAQ 288 (497)
Q Consensus 271 G~iv~~G~~~~~~~~f~~ 288 (497)
|++.+.|+++++.+++..
T Consensus 223 G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred CEEEEcCCHHHHHHHHHH
Confidence 999999999999987754
No 347
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=333.30 Aligned_cols=207 Identities=24% Similarity=0.373 Sum_probs=165.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
|+++||+++| +.+.+|+||||+|++|+++||+||||||||||||+|+|.++|+ +|+|.++|. ..++
T Consensus 2 i~i~nls~~~-----g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRR-----GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEe-----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEEE
Confidence 7899999999 4577999999999999999999999999999999999998886 899999874 2478
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhh-----------------------ccC-CCCCCHHHHHHHHHHHHHHcCCC-cccccc
Q 010936 132 YVTQDDNLIGTLTVRETISYSAR-----------------------LRL-PDKMPWSEKRTLVERTIIEMGLQ-DCADTV 186 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 186 (497)
|++|+...+. .|+.+++.-... +.. .......+...++.++++.+|+. +..++.
T Consensus 68 ~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 9998653332 466554432100 000 00000112345688899999996 456765
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 187 vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
++ .|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++|||. ..+..+||+++
T Consensus 147 ~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i~ 217 (638)
T PRK10636 147 VS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKII 217 (638)
T ss_pred hh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEEE
Confidence 54 69999999999999999999999999999999999999999998775 56999999995 68889999999
Q ss_pred EeeCCeEE-EEeCchhH
Q 010936 267 LLSGGKTV-YFGETSAA 282 (497)
Q Consensus 267 ~L~~G~iv-~~G~~~~~ 282 (497)
+|++|+++ |.|+.+..
T Consensus 218 ~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 218 HIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EEeCCEEEEecCCHHHH
Confidence 99999996 56766543
No 348
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.4e-36 Score=358.06 Aligned_cols=243 Identities=22% Similarity=0.312 Sum_probs=187.6
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|..|.+||.++++.++....... ... ........++++|+++.+.. ..+++|+|+|+++++
T Consensus 602 ~a~~s~~Ri~~~l~~~~~~~~~~~-----------~~~----~~~~~~~~i~~~~~~~~~~~---~~~~~l~~isl~i~~ 663 (1522)
T TIGR00957 602 QASVSLKRLRIFLSHEELEPDSIE-----------RRT----IKPGEGNSITVHNATFTWAR---DLPPTLNGITFSIPE 663 (1522)
T ss_pred HHHHHHHHHHHHHcCccccccccc-----------ccc----cCCCCCCcEEEEEeEEEcCC---CCCceeeeeEEEEcC
Confidence 578899999999975543211000 000 00001125999999999942 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
|++++|+||||||||||+++|+|.++|. +|+|.++| .++||+|++.+++ .||+||+.|+...
T Consensus 664 G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g--------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~------ 725 (1522)
T TIGR00957 664 GALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG--------SVAYVPQQAWIQN-DSLRENILFGKAL------ 725 (1522)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC--------EEEEEcCCccccC-CcHHHHhhcCCcc------
Confidence 9999999999999999999999999885 89999987 4899999998876 5999999987421
Q ss_pred CHHHHHHHHH--HHHHHcCC-CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 010936 162 PWSEKRTLVE--RTIIEMGL-QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238 (497)
Q Consensus 162 ~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~ 238 (497)
..+..++.++ .+.+.+++ ++..+|.+|+ ++.+||||||||++||||++.+|++++||||||+||+.++..+.+.+.
T Consensus 726 ~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~ 804 (1522)
T TIGR00957 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804 (1522)
T ss_pred CHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence 1111111111 12233333 3455788886 577899999999999999999999999999999999999999999987
Q ss_pred HHH--hCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 239 CLS--RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 239 ~l~--~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+.. .+|+|+|++||++. . ...||+|++|++|+++..|+.+++.
T Consensus 805 ~~~~~~~~~tvIlvTH~~~-~-l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 805 GPEGVLKNKTRILVTHGIS-Y-LPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred hhhhhhcCCEEEEEeCChh-h-hhhCCEEEEecCCeEEeeCCHHHHH
Confidence 542 35799999999963 4 4569999999999999999988875
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.9e-36 Score=280.54 Aligned_cols=154 Identities=28% Similarity=0.431 Sum_probs=135.7
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEc
Q 010936 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVT 134 (497)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~ 134 (497)
.|+++.| +++.+++++ +++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~-----~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRY-----GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEE-----CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEEc
Confidence 5788888 346789885 999999999999999999999999999999986 8999999853 68888
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 010936 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214 (497)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~ 214 (497)
|+.. ||||||||++|||+|+.+|+
T Consensus 68 q~~~--------------------------------------------------------LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 68 QYID--------------------------------------------------------LSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred ccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 7532 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE--eCchh
Q 010936 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIHQPSSEVFELFDRLYLLSGGKTVYF--GETSA 281 (497)
Q Consensus 215 lllLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~--G~~~~ 281 (497)
+++|||||+|||+.++..+.+.|+++++++ .|||++||++ .++..+||++++|+++-.++. |.+..
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 999999999999999999999999997764 9999999995 678889999999998766554 55543
No 350
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=283.13 Aligned_cols=216 Identities=26% Similarity=0.398 Sum_probs=178.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----- 126 (497)
+++.|+++.+..+....+++|+++|+++..|+++-|+|.||||||||+++|+|.+.|+ +|+|.++|.++...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHH
Confidence 4566777777555555688999999999999999999999999999999999999996 99999999986421
Q ss_pred cCcEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCcccCCCCHHH
Q 010936 127 FGTAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGe 199 (497)
...++-|+|+| ..+|.||+.||+.++...-...+... ...++...+.++.+ ||++..++++| -|||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQ 153 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQ 153 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchH
Confidence 13467799997 46899999999999865321122222 22333344455554 66788888887 499999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||-|+++.|-++.|+||||||=|++|||.++..+++.-.++.++ +.|.+|+||.. ..+..+.+|.++|++|+||..
T Consensus 154 RQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 154 RQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred HHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEE
Confidence 99999999999999999999999999999999999999998764 78999999995 689999999999999999976
No 351
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-36 Score=267.67 Aligned_cols=202 Identities=25% Similarity=0.335 Sum_probs=171.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---CCc
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---~~~ 127 (497)
.++++|++... +....|-|+|++|.+||++-||||||||||||+..+.|.+.+.-..+|++++|+++.. ...
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 47788998665 4678999999999999999999999999999999999999887678999999999754 345
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+++|.++|++.+||+++|.+|+.|+.. ..+....++..++..|++.||....+. .|.+||||||-||++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp----~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALP----ATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecC----cccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHH
Confidence 789999999999999999999999853 334445667778999999999988776 45689999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+|+..|+.++||||+|.||..-+.+..+..-.- +..|..+|.+|||. .++. .-.||+-|
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~-~Dvp-agsrVie~ 207 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL-QDVP-AGSRVIEM 207 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc-ccCC-CCCeeeee
Confidence 999999999999999999999999999987654 44699999999995 3333 33344433
No 352
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=307.77 Aligned_cols=215 Identities=30% Similarity=0.403 Sum_probs=183.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.+.|.++++.|. +.+++|+++||++.+|+.+||+||||+||||++++|-.++++. +|.|.+||+++..
T Consensus 262 ~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~s 334 (497)
T COG5265 262 AVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334 (497)
T ss_pred eEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHH
Confidence 489999999994 5689999999999999999999999999999999999999986 9999999998532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCCHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKR-----TLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 200 (497)
.++-||.||||..||.. |...|+.|+..- .+..+.. +.+...++ -+++.+++.||+.+. .||||||
T Consensus 335 lR~aIg~VPQDtvLFND-ti~yni~ygr~~-----at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgergl-klSggek 405 (497)
T COG5265 335 LRRAIGIVPQDTVLFND-TIAYNIKYGRPD-----ATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGL-KLSGGEK 405 (497)
T ss_pred HHHHhCcCcccceehhh-hHHHHHhccCcc-----ccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhee-eccCchH
Confidence 24679999999999987 999999998432 2233322 23333443 457889999998444 4999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
|||+|||+++.+|+||+|||.||+||..+.++|...|+++. .|+|.+++.|.++ .+ --+|.|++|++|+|++.|+.+
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls-ti-~~adeiivl~~g~i~erg~h~ 482 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS-TI-IDADEIIVLDNGRIVERGTHE 482 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh-hc-cCCceEEEeeCCEEEecCcHH
Confidence 99999999999999999999999999999999999999987 4899999999975 33 459999999999999999998
Q ss_pred hHHH
Q 010936 281 AAFE 284 (497)
Q Consensus 281 ~~~~ 284 (497)
+++.
T Consensus 483 ~ll~ 486 (497)
T COG5265 483 ELLA 486 (497)
T ss_pred HHHH
Confidence 8764
No 353
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.9e-35 Score=329.38 Aligned_cols=205 Identities=24% Similarity=0.346 Sum_probs=166.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++|+++.|. +.+.+|+|+||+|++|++++|+|||||||||||++|+|+++|. +|+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~----~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYP----GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeC----CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------ee
Confidence 4699999999983 2346999999999999999999999999999999999999886 899998752 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
++|++|+. ++.+++.++..+......+ ... .+.+.++++.+|+.+ ..++. +..|||||||||+||++
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHHHHHHHHHH
Confidence 89999975 3445666664432211111 111 245778999999974 45554 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-EEeCchhHH
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 283 (497)
|+.+|++|||||||+|||+.+...+++.|.+. .| |||++||++ ..+..+||++++|++|+++ +.|+.++..
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999999999999999998888765 34 999999995 6788999999999999998 778776543
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.5e-35 Score=277.08 Aligned_cols=157 Identities=29% Similarity=0.350 Sum_probs=131.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+++|+|+||++++|++++|+|||||||||||++|.+ . +|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH------------
Confidence 4679999999999999999999999999999999953 2 79999998743222234778776
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCCC
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSG 224 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~--p~lllLDEPTsg 224 (497)
.++++.++|.. ..++ +++.||||||||++||++|+.+ |+++||||||+|
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 13566778764 2454 4467999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 225 LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 225 LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||+.++..+.+.|+++++.|+|||++||++ .++ +.||++++|.+|+.
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~-~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNL-DVL-SSADWIIDFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEECCCCC
Confidence 999999999999999977799999999996 454 68999999966543
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.3e-35 Score=326.93 Aligned_cols=207 Identities=23% Similarity=0.311 Sum_probs=164.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++||+++| +.+.+|+||||+|++|+++||+|||||||||||++|+|+++|+ +|+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~-----~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSF-----SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEe-----CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC------CEE
Confidence 58999999999 3467999999999999999999999999999999999999886 899999873 136
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHh------------------------------hccC-CCCCCHHHHHHHHHHHHHHcCC
Q 010936 131 AYVTQDDNLIGTLTVRETISYSA------------------------------RLRL-PDKMPWSEKRTLVERTIIEMGL 179 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~------------------------------~~~~-~~~~~~~~~~~~v~~~l~~lgL 179 (497)
+|++|.+......+|.+++..+. .+.. .......+...++.++++.+|+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 78888654333346666542110 0000 0000001234568889999999
Q ss_pred CccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHH
Q 010936 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (497)
Q Consensus 180 ~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~ 259 (497)
.. ++ .+..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++ +.|||++||++ ..+.
T Consensus 149 ~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~-~~l~ 217 (635)
T PRK11147 149 DP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDR-SFIR 217 (635)
T ss_pred CC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCH-HHHH
Confidence 62 44 44579999999999999999999999999999999999999999999887 25999999995 6788
Q ss_pred hcCCeEEEeeCCeEE-EEeCchhH
Q 010936 260 ELFDRLYLLSGGKTV-YFGETSAA 282 (497)
Q Consensus 260 ~~~D~v~~L~~G~iv-~~G~~~~~ 282 (497)
.+||+|++|++|+++ +.|+.++.
T Consensus 218 ~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 218 NMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HhcCeEEEEECCEEEEecCCHHHH
Confidence 999999999999997 45776553
No 356
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9e-36 Score=271.39 Aligned_cols=222 Identities=23% Similarity=0.343 Sum_probs=191.3
Q ss_pred EEEEEeEEEEEEccC----CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC--
Q 010936 51 RLTWKDLTVMVTLSN----GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-- 124 (497)
.++++||++++.... .....+++.|||+++.|+.+||+|.||||||||.|+|+|.++|+ +|+|++||++..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCcccccc
Confidence 367889988875431 23456899999999999999999999999999999999999996 999999998742
Q ss_pred ---CCcCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHH
Q 010936 125 ---LSFGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGG 198 (497)
Q Consensus 125 ---~~~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgG 198 (497)
.+.+.|-+++||++ +.|.+.+.+-|....++ ...+....+.+++.+.|+.+||-+ .++- +++.||-|
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~ 153 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPG 153 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCch
Confidence 23467899999974 67888888888877654 345667778888999999999854 3433 67789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||++||||+.+|+|++.||..++||...+.++++++-+|.++ |.+-|.++.+. ..+..++|.|++|++|++++.|
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecC
Confidence 999999999999999999999999999999999999999999875 99999999995 6899999999999999999999
Q ss_pred CchhHH
Q 010936 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
++.+++
T Consensus 233 ~t~~v~ 238 (267)
T COG4167 233 STADVL 238 (267)
T ss_pred Chhhhh
Confidence 998764
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.3e-35 Score=349.49 Aligned_cols=194 Identities=25% Similarity=0.375 Sum_probs=158.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
+++|+|+|+++++|++++|+|||||||||||++|+|..+|. +|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 46999999999999999999999999999999999999986 89999987 48999999999986 99999
Q ss_pred HHHHhhccCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 010936 149 ISYSARLRLPDKMPWSEKR--TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~--~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD 226 (497)
+.|+.... .....+.. ...++.++.+ .+..+|.+|+ ++..|||||||||+||||++.+|+++||||||+|||
T Consensus 507 I~~g~~~~---~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 507 IIFGLSYD---EYRYTSVIKACQLEEDIALF--PEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred HHhccccc---hHHHHHHHHHHhHHHHHHhc--cccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 99874321 00000000 0112222222 2344677876 577899999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 227 SAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 227 ~~~~~~i~~~-L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+.++..+.+. ++.+. +|+|+|++||++. .+ ..||+|++|++|+++..|+.+++.
T Consensus 581 ~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 581 VVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999985 66664 4899999999963 44 569999999999999999988875
No 358
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-35 Score=267.15 Aligned_cols=214 Identities=28% Similarity=0.366 Sum_probs=171.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe---cC---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK---TK--- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~---~~--- 124 (497)
.+++.++|+.| +.....+||||++.|||+++|+|+|||||||||++|++++.|+ .|+|.+.-.+ ..
T Consensus 6 LL~V~~lsk~Y-----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 6 LLSVSGLSKLY-----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred ceeehhhhhhh-----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhh
Confidence 58899999999 3456789999999999999999999999999999999999996 8999986532 11
Q ss_pred --C------CcCcEEEEcCCCC--CCCCC----CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 010936 125 --L------SFGTAAYVTQDDN--LIGTL----TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190 (497)
Q Consensus 125 --~------~~~~i~yv~Q~~~--l~~~l----TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 190 (497)
. .+...|+|.|+|. +-... .|.|-++-.- .......++.+.++|+++.++... +. .
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G------~RHYG~iR~~a~~WL~~VEI~~~R---iD-D 147 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG------ARHYGNIRAEAQDWLEEVEIDLDR---ID-D 147 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhh------hhhhhhHHHHHHHHHHhcccCccc---cc-C
Confidence 0 1234799999863 32222 3333332111 111234567788999999886432 22 3
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
.|+.+||||+||+.|||-|++.|+++|+||||.|||..-+..++++++.|..+ |..+|++|||. .-+.-++||.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 67899999999999999999999999999999999999999999999999875 99999999995 56667899999999
Q ss_pred CCeEEEEeCchhHH
Q 010936 270 GGKTVYFGETSAAF 283 (497)
Q Consensus 270 ~G~iv~~G~~~~~~ 283 (497)
+|++++.|-.+.++
T Consensus 227 ~g~vve~GLTDrvL 240 (258)
T COG4107 227 QGQVVESGLTDRVL 240 (258)
T ss_pred CCCEeccccccccc
Confidence 99999999777654
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-34 Score=264.72 Aligned_cols=151 Identities=40% Similarity=0.612 Sum_probs=135.7
Q ss_pred EEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcC
Q 010936 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFG 128 (497)
Q Consensus 54 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~ 128 (497)
++|+++.+. .+.+|+++|+++++|++++|+|+||||||||+++|+|.+++. +|+|+++|.+... ..+
T Consensus 2 ~~~~~~~~~-----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYG-----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHh
Confidence 578888883 357999999999999999999999999999999999999885 8999999986432 124
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
.++|++| |||||+||++||++
T Consensus 74 ~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~~~ 94 (157)
T cd00267 74 RIGYVPQ-----------------------------------------------------------LSGGQRQRVALARA 94 (157)
T ss_pred ceEEEee-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 5788887 89999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
|+.+|++++|||||+|||+.++..+.+.|+++.+.++|+|++||++ .++..+||++++|++|+
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999877789999999995 67888899999999875
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.2e-34 Score=317.47 Aligned_cols=188 Identities=29% Similarity=0.370 Sum_probs=156.6
Q ss_pred EEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEE-----------ECCEecCC
Q 010936 57 LTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL-----------LNGHKTKL 125 (497)
Q Consensus 57 ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~-----------~~G~~~~~ 125 (497)
+++.|. .+..+|++++ .+++|+++||+||||||||||||+|+|+++|+ +|+|. ++|.+...
T Consensus 79 ~~~~yg----~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 79 PVHRYG----VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred ceEEec----CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHH
Confidence 566662 2346999999 99999999999999999999999999999986 89997 89976421
Q ss_pred -------CcCcEEEEcCCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 010936 126 -------SFGTAAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -------~~~~i~yv~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (497)
....++|.+|....+|. .||.|++... +....++++++.++|.+..|+.++ +|
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~L 213 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----EL 213 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hC
Confidence 11235666664433332 2999998642 123568899999999888887664 69
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++ .++..+||+|++|+++
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999988 99999999995 6888999999999864
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.5e-34 Score=307.27 Aligned_cols=207 Identities=29% Similarity=0.402 Sum_probs=173.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.| +.+.+++|+|+++.+|+.+||+|+||||||||||+|+|...|+ +|+|...+. -++
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------ceE
Confidence 58999999999 5688999999999999999999999999999999999999886 899987542 368
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCccc
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLR-------------LPDK--------------MPWSEKRTLVERTIIEMGLQDCA 183 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~ 183 (497)
+|++|++.+.+..||.+.+.-+..-. .... +..-+.+.++..++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 99999999999999999887753210 0000 0001123567788888998776
Q ss_pred cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010936 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 184 ~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
++.++ +||||||.||+||++|+.+|++|||||||++||..+...+-+.|++. .| |+|+|||| ...+-++|+
T Consensus 148 ~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t 218 (530)
T COG0488 148 DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVAT 218 (530)
T ss_pred cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhh
Confidence 77665 69999999999999999999999999999999999999999998754 56 99999999 789999999
Q ss_pred eEEEeeCCeEE-EEeCchh
Q 010936 264 RLYLLSGGKTV-YFGETSA 281 (497)
Q Consensus 264 ~v~~L~~G~iv-~~G~~~~ 281 (497)
+|+.++.|++. |.|.-+.
T Consensus 219 ~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 219 HILELDRGKLTPYKGNYSS 237 (530)
T ss_pred heEEecCCceeEecCCHHH
Confidence 99999999875 4565443
No 362
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-34 Score=261.97 Aligned_cols=187 Identities=24% Similarity=0.378 Sum_probs=163.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc---
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF--- 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--- 127 (497)
.++.+||++.- ....++.++||++.+||++-|.|||||||||||++|+|+..|. +|+|+++|.++...+
T Consensus 2 ~L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 2 MLEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESY 73 (209)
T ss_pred cchhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhH
Confidence 35667777765 4678999999999999999999999999999999999999996 999999998764322
Q ss_pred -CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 128 -GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 128 -~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
..+-|+-..+.+-+.|||.|||.|...+... . ....+.+.++.+||....|.+++ .||-||||||+||
T Consensus 74 ~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~----~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlA 142 (209)
T COG4133 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGS--G----NAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALA 142 (209)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHhCC--C----chhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHH
Confidence 3467888889999999999999998776422 1 12457889999999999999876 5999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~ 256 (497)
|-++..+++.|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 143 rL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 143 RLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999999999999999999999988889999999999853
No 363
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-33 Score=320.53 Aligned_cols=247 Identities=21% Similarity=0.300 Sum_probs=196.2
Q ss_pred hhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCe
Q 010936 4 SAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGT 83 (497)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge 83 (497)
..|.+||.|+.+.+++ .. ... ....++..|. ..-.|+++|+++.|.. +...+|+||||+|+|||
T Consensus 1104 m~SVERv~eY~~~~~E-~p-~~~-~~~~pp~~WP----------~~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSE-AP-LEI-EESRPPPSWP----------SKGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGE 1167 (1381)
T ss_pred chhhhHHHHHhcCCCC-CC-CCC-cCCCCCCCCC----------CCCeEEEEEeEEEeCC---CCcchhcCceEEEcCCc
Confidence 3578999999986655 11 111 1111334443 2346999999999953 34679999999999999
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
.+||+|+.|||||||+++|-++..|. +|+|.+||.++.. .+++++.+||||.+|.+ |||.||.=..
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~----- 1238 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD----- 1238 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc-----
Confidence 99999999999999999999999885 8999999998642 25689999999999998 9999986321
Q ss_pred CCCCHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 159 DKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
..+++ .+-++|+..+ ++...|+.|.+ .+.++|-||||.++|||||+++++||+|||.|+++|+.+-.
T Consensus 1239 -e~sD~----~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1239 -EYSDD----EIWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred -ccCHH----HHHHHHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence 12222 2333343333 33456777765 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.|.+.|++-= .++|||.+.|+.. .+. -+|||+||++|+++++|+|.++++
T Consensus 1313 lIQ~tIR~~F-~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1313 LIQKTIREEF-KDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHHHh-cCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 9999998853 4799999999974 454 499999999999999999998864
No 364
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.6e-33 Score=331.89 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=154.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++ +.++|++|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHH
Confidence 356999999999999999999999999999999999999885 8999864 46999999998875 59999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
|+.|+.... ............+++.++.+ .+..++.+|+ ++..|||||||||+|||||+.+|++|||||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999863210 00000000011223334443 1223455554 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
.++..+++.+......|+|+|++||++ .. ...||+|++|++|++++.|+.+++.
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~-~~-~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQV-HV-VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCH-HH-HHhCCEEEEEECCEEEEecCHHHHH
Confidence 999998875432223589999999996 34 4789999999999999999988865
No 365
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-32 Score=315.59 Aligned_cols=240 Identities=25% Similarity=0.314 Sum_probs=192.8
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|..+.+|+.+.+..+ +.+..... . ....+....++++|.+++.... ...+.|+||||+|++
T Consensus 485 qa~VS~~Ri~~fl~~~-e~~~~~~~------~---------~~~~~~~~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~ 546 (1381)
T KOG0054|consen 485 QAKVSLKRLKEFLLSE-ELDPDSVE------R---------SPDEAGENAIEIKNGSFSWDSE--SPEPTLKDINFEIKK 546 (1381)
T ss_pred HHHHHHHHHHHHhcCc-ccCccccc------c---------CCCCCCCceEEEeeeeEecCCC--CCcccccceeEEecC
Confidence 5778899999999743 32221100 0 0111233458999999987531 234589999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
|+++||+|+-|||||+||.+|.|-.+.. +|+|.++|. ++||||.+.++.. ||+|||.|+..+.
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs--------iaYv~Q~pWI~ng-TvreNILFG~~~d----- 609 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS--------VAYVPQQPWIQNG-TVRENILFGSPYD----- 609 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe--------EEEeccccHhhCC-cHHHhhhcCcccc-----
Confidence 9999999999999999999999998874 999999884 8999999999987 9999999986431
Q ss_pred CHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 010936 162 PWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (497)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~ 234 (497)
+++.+++++...|+ ..-.|.||+ ++-+||||||||++||||+-++++|+|||.|.|++|.+....+.
T Consensus 610 -----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if 683 (1381)
T KOG0054|consen 610 -----EERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIF 683 (1381)
T ss_pred -----HHHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHH
Confidence 24455566655543 445688887 56679999999999999999999999999999999999999998
Q ss_pred HHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010936 235 QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 235 ~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..-...-+++|+|++||+. +....||.|++|++|++...|+.+|+.+
T Consensus 684 ~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 684 EECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 86544333589999999994 5788899999999999999999999873
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.4e-33 Score=309.68 Aligned_cols=215 Identities=20% Similarity=0.258 Sum_probs=153.6
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--- 124 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--- 124 (497)
....|+++|++++| +.+.+|+|+||+|.+|+.+||+|||||||||||++|+|....+.+.+|+|.+.++...
T Consensus 174 ~~~~I~i~nls~~y-----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 174 AIKDIHMENFSISV-----GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred CceeEEEceEEEEe-----CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 44569999999999 3466999999999999999999999999999999999964111123677765433210
Q ss_pred --C-------C-------cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHH-------------------HHHHH
Q 010936 125 --L-------S-------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS-------------------EKRTL 169 (497)
Q Consensus 125 --~-------~-------~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~-------------------~~~~~ 169 (497)
. . ...++|++|++.+... ++.++...... ...+.. ....+
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANK----DGVDKDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccc----cccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 0 0 0113444443322111 11111100000 000111 22345
Q ss_pred HHHHHHHcCCC-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 010936 170 VERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248 (497)
Q Consensus 170 v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI 248 (497)
+.+++..+|+. +..++.+ .+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||
T Consensus 324 ~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 395 (718)
T PLN03073 324 AASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFI 395 (718)
T ss_pred HHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEE
Confidence 66778888885 3345544 579999999999999999999999999999999999999999999886 68999
Q ss_pred EEeCCCChHHHhcCCeEEEeeCCeEE-EEeCchh
Q 010936 249 ASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSA 281 (497)
Q Consensus 249 ~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~ 281 (497)
++||+. ..+..+||++++|++|+++ +.|+.++
T Consensus 396 ivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 396 VVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 999995 6788999999999999996 6676554
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=6.1e-32 Score=262.99 Aligned_cols=189 Identities=25% Similarity=0.291 Sum_probs=134.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--EecC---CCcCcE
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLL-DALSSRLASNAFLSGTILLN-----------G--HKTK---LSFGTA 130 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL-~~L~G~~~~~~~~~G~I~~~-----------G--~~~~---~~~~~i 130 (497)
..++|+||||++++||+++|+||||||||||+ ..+.. .|++.+. | .... ......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 46799999999999999999999999999995 44431 1221110 0 0000 011123
Q ss_pred EEEcCCC--CCCCCCCHHH---HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHH
Q 010936 131 AYVTQDD--NLIGTLTVRE---TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 131 ~yv~Q~~--~l~~~lTV~e---~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
++..|++ .+.|..+|.. ...+...+. .......+ .+.++.++|.+ ..+. ++.+|||||||||+
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHH
Confidence 3444443 2244456542 222221111 11112223 46789999975 3555 45689999999999
Q ss_pred HHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEE
Q 010936 205 IALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYF 276 (497)
Q Consensus 205 IA~aL~~~p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~ 276 (497)
||++|+.+| ++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++ .+||++++| ++|+++++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~-~~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE-DTI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCH-HHH-HhCCEEEEeCCCccccCCEEEec
Confidence 999999998 59999999999999999999999999987899999999996 454 699999999 99999987
Q ss_pred e
Q 010936 277 G 277 (497)
Q Consensus 277 G 277 (497)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-33 Score=248.99 Aligned_cols=209 Identities=27% Similarity=0.361 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEEccC--CcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe--cC--
Q 010936 51 RLTWKDLTVMVTLSN--GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK--TK-- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~--~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~--~~-- 124 (497)
.+.++|+++++.... +-.-++|+|+||+++.||++++-|||||||||||++|-|-+.|+ +|+|++.-.. +.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhh
Confidence 578899988886532 22357999999999999999999999999999999999999986 9999985432 11
Q ss_pred ---------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 010936 125 ---------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (497)
Q Consensus 125 ---------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (497)
.+++.+|||.|.-...|..+..|.++-.+.-+ +++.+..+.++..++.++++.+..-. -.|.++
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~----LaPaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWS----LAPATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhc----CCCccc
Confidence 12356899999888888888777776654333 56677778889999999999765433 256789
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 196 SgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
||||+|||.|||.++.+-+||+|||||++||..++..++++|.+-+..|..+|=+-|| .+--...|||++.+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999988889999999999 4445568999998863
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=8.6e-32 Score=240.59 Aligned_cols=132 Identities=42% Similarity=0.690 Sum_probs=118.1
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----CcCcEEEEcCCCCCCCCCCHH
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
|+|||+++++|++++|+|+||||||||+++|+|..+|. +|+|.++|.+... ..+.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999885 9999999998643 235799999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 010936 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTs 223 (497)
|| ....+++++++.+++.+..++.++. ....|||||||||+||+||+.+|+++||||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 1235588899999998888888765 457899999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.2e-30 Score=256.21 Aligned_cols=195 Identities=27% Similarity=0.352 Sum_probs=150.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHH-----cCC-----CCC--C------CceeEEEECCEecCCCc---
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-----SRL-----ASN--A------FLSGTILLNGHKTKLSF--- 127 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~-----G~~-----~~~--~------~~~G~I~~~G~~~~~~~--- 127 (497)
..-|+|||.+|+.|.+++|.|+||||||||++.+. ..+ .|. . ...--|.++..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998552 110 010 0 01123666665431100
Q ss_pred ------------------------C----cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCC
Q 010936 128 ------------------------G----TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179 (497)
Q Consensus 128 ------------------------~----~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 179 (497)
+ .+.|..++...+..|||.|++.|..... ...++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 0 1345556666667899999999986542 12456789999999
Q ss_pred Cc-cccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 180 QD-CADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 180 ~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~---p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
.. ..+. .+..|||||+||+.||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~- 232 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL- 232 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-
Confidence 76 3455 3457999999999999999996 799999999999999999999999999988899999999996
Q ss_pred hHHHhcCCeEEEe------eCCeEEEEeCc
Q 010936 256 SEVFELFDRLYLL------SGGKTVYFGET 279 (497)
Q Consensus 256 ~~i~~~~D~v~~L------~~G~iv~~G~~ 279 (497)
..+ +.||+++.| ++|++++.|++
T Consensus 233 ~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 444 679999999 89999999874
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2e-29 Score=265.05 Aligned_cols=214 Identities=25% Similarity=0.421 Sum_probs=179.3
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC--
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-- 126 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-- 126 (497)
...++++|++.. ..++||||++++||++||.|-=|||+|-|+++|.|..++. +|+|.+||++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCH
Confidence 445778777643 2578999999999999999999999999999999976664 89999999985432
Q ss_pred ----cCcEEEEcCC---CCCCCCCCHHHHHHHHhhccCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 010936 127 ----FGTAAYVTQD---DNLIGTLTVRETISYSARLRLP-D-KMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGIS 196 (497)
Q Consensus 127 ----~~~i~yv~Q~---~~l~~~lTV~e~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 196 (497)
...++|||.| ..++..++|.+|+.++...+.. . -++....++.++++.+.+++.. ..+..+ ..||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LS 403 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLS 403 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCC
Confidence 2468999997 5689999999999998322211 1 2455566678899999999853 344544 4799
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
||.+|||.|||.|..+|++|||||||.|.|.-+..+|.++|++++++|++||++|.+. +|+..+||||++|++|+++..
T Consensus 404 GGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred chhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999995 799999999999999999875
Q ss_pred eCch
Q 010936 277 GETS 280 (497)
Q Consensus 277 G~~~ 280 (497)
-+.+
T Consensus 483 ~~~~ 486 (500)
T COG1129 483 LDRE 486 (500)
T ss_pred eccc
Confidence 4433
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=272.15 Aligned_cols=203 Identities=27% Similarity=0.319 Sum_probs=168.4
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~ 127 (497)
....++++|+++.|. +.+.+++++||.+.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~----~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYD----GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccC----CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------
Confidence 356799999999994 2378999999999999999999999999999999999998885 899987421
Q ss_pred CcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHH
Q 010936 128 GTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 128 ~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
-.+||..|+. .+.+..|+.|++.-...- . .+..+...|..+++.. ...++| ..||||||.||.+
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~~~-----~----~e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~L 450 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGFPD-----G----DEQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLL 450 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhCcc-----c----cHHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHH
Confidence 3589999985 445778999998754211 1 1456888999999964 345554 4799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEE-eCchhH
Q 010936 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYF-GETSAA 282 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~-G~~~~~ 282 (497)
|+.++.+|.+|||||||+.||..+...+.+.|... .-|||+|||| ...+..+|++++.+.+ ++..+ |..++.
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999999999999999999999998776 4599999999 5789999999999998 55444 665543
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=7.7e-30 Score=243.13 Aligned_cols=165 Identities=27% Similarity=0.356 Sum_probs=129.9
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC------CCceeEEEECCEecCC--CcCcEEEEcCCCCCCCCCC
Q 010936 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN------AFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLT 144 (497)
Q Consensus 73 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~------~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lT 144 (497)
+++++++++| +++|+||||||||||+++|+|+.++. ....|++.++|++... ..+.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999987543 1224568787775421 235799999998766
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeC
Q 010936 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDE 220 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~p~lllLDE 220 (497)
|. .. ...+++++++. .+..++ .+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~--~~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 01345666665 333444 44579999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
||+|||+.....+.+.|+++++ +.|||++||++ .. .+.||+++.|..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~-~~-~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRK-GT-MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH-HH-HhhcceEEEEEe
Confidence 9999999999999999999865 68999999996 34 578999999963
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=7.1e-31 Score=237.88 Aligned_cols=206 Identities=27% Similarity=0.416 Sum_probs=174.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.+.++|+++.- -|-.+|+.+..||++-++|||||||||||-.++|+++. +|+|.++|.+...
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhH
Confidence 46677776543 36789999999999999999999999999999999865 8999999998532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHH
Q 010936 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 205 (497)
..+.-+|+.|+..-...|.|+.++.+.- +.++....++++...++|.+...+.+ ..|||||.|||-+
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L~q--------P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRL 136 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTLHQ--------PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRL 136 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhhcC--------chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEE
Confidence 1234579999877767789999887642 23455567888888999987776654 5799999999999
Q ss_pred HHHHHh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 206 ALEILM-----RP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 206 A~aL~~-----~p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|...+. || ++|+||||.++||......+-.+|.+++.+|.+|||+.||. +...+.+|++++|+.|++...|.
T Consensus 137 Aav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred eEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecc
Confidence 987764 44 79999999999999999999999999999999999999996 57889999999999999999999
Q ss_pred chhHH
Q 010936 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
.++++
T Consensus 216 ~~eVl 220 (248)
T COG4138 216 REEVL 220 (248)
T ss_pred hhhhc
Confidence 99876
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=3.6e-28 Score=238.41 Aligned_cols=183 Identities=20% Similarity=0.328 Sum_probs=129.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC----------------CCCCCCcee--------EEEECCEec
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR----------------LASNAFLSG--------TILLNGHKT 123 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~----------------~~~~~~~~G--------~I~~~G~~~ 123 (497)
++.++++++ |++++|+|||||||||||++|++. +.++ +| +|.+++.+.
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCC
Confidence 456788877 789999999999999999999843 3332 34 555555321
Q ss_pred ----C-C---CcCcEEEEcCCCCCCC-CCCHHHHHHHHhhccCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCcccC
Q 010936 124 ----K-L---SFGTAAYVTQDDNLIG-TLTVRETISYSARLRLPDKMPW-SEKRTLVERTIIEMGLQDCADTVIGNWHLR 193 (497)
Q Consensus 124 ----~-~---~~~~i~yv~Q~~~l~~-~lTV~e~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 193 (497)
. . ..+.++|++|+..+++ .+|..|...+............ ..... ++.+.+++.+..+. .+.
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~-----~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQ-----EMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhccccccc-----ccc
Confidence 0 0 1245889998887776 4677776666554322111000 00011 22223444443444 445
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
.||||||||++||++|+. +|+++||||||+|||+.++..+++.|+++++ +.+||+++|++ ++.++||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 799999999999999974 5899999999999999999999999999865 78888888884 6789999999996
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2.6e-29 Score=242.17 Aligned_cols=187 Identities=19% Similarity=0.229 Sum_probs=139.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-CCcCcE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGTA 130 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-~~~~~i 130 (497)
++++|.. .| +.+.+|+++++ ++++|+||||||||||+++|+-. +|.+.. ...+++
T Consensus 6 l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i 61 (212)
T cd03274 6 LVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKL 61 (212)
T ss_pred EEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhH
Confidence 5666654 34 35678999987 89999999999999999999722 222211 112468
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCcccCCCCHHHHHHH
Q 010936 131 AYVTQDDNLIGTLTVRETISYSARLRLP-----DKMPWSEKRT--LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 203 (497)
+|++|+..+++.+|+++++.+....... .+........ ...++++.++|.+..++.+ ..||+|||||+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~ 136 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLS 136 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHH
Confidence 8999998889999999987776543100 0111111000 1245566778877777654 46999999999
Q ss_pred HHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 204 SIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 204 ~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+||++++. +|++++|||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.++||++++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999974 4799999999999999999999999999854 57888889994 68899999999963
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=5e-28 Score=239.05 Aligned_cols=182 Identities=19% Similarity=0.212 Sum_probs=136.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE-ec-C------CCcCcEEEEcCCC---------CCCCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-KT-K------LSFGTAAYVTQDD---------NLIGTLT 144 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~-~~-~------~~~~~i~yv~Q~~---------~l~~~lT 144 (497)
..+++|+||||||||||+++|++.+.+. ..|++.+.|. +. . .....+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4499999999999999999999998763 2467877775 21 1 1224688999985 3456789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCcccCCCCHHHHHHHHHHHHH
Q 010936 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------------VIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRv~IA~aL 209 (497)
|.+++.+......... .+....+.+.++++.+||...... ...+.++..||||||||++||++|
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 9988866532211000 122234678889999998611000 011225668999999999999999
Q ss_pred H----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 210 L----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 210 ~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
+ .+|++++|||||+|||+.+...+.+.|+++. +|.|||++||++ ++.+.||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 489999999993 6788999999876
No 378
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=240.07 Aligned_cols=234 Identities=24% Similarity=0.273 Sum_probs=175.9
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|.++|.++...++..+ ...+ +. +. .--.++++|+.|.|.. ..-=+..||++++.
T Consensus 291 ~AqvA~~kiakle~~~~~a~-----~~~~--------q~---~p--~~~~lelrnvrfay~~----~~FhvgPiNl~ikr 348 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKAD-----FPRP--------QA---FP--DWKTLELRNVRFAYQD----NAFHVGPINLTIKR 348 (546)
T ss_pred HHHHHHHHHHHhhcCCcccc-----CCCC--------Cc---CC--cccceeeeeeeeccCc----ccceecceeeEEec
Confidence 57789999998876433321 1111 11 11 1124999999999953 22458899999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++-|+|.||||||||+++|+|++.|. +|+|++||+++... ++-++-|+-|-.+|+.+-
T Consensus 349 GelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------------ 413 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------------ 413 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------------
Confidence 9999999999999999999999999996 99999999986421 233455666666666521
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~ 236 (497)
.+++. ...+.++.+++++.|.+...-.=|+-.+-.||.|||||+++-.||+-+-+|+++||=.+.-||.-++.+.+.
T Consensus 414 ~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 414 GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 11111 112457788888887654322222223456999999999999999999999999999999999999999887
Q ss_pred HHH-HHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 237 LRC-LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 237 L~~-l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+-- ++++|+||+.+|||- .-+..+||++.|++|++++.-
T Consensus 491 lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 491 LLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 665 455799999999993 468999999999999998753
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=1e-26 Score=224.28 Aligned_cols=190 Identities=20% Similarity=0.210 Sum_probs=130.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEe-CCeEEEEECCCCChHHHHHHHHHcCC-CCCCCceeEEEECCE-e---cC
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAE-PGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGH-K---TK 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIlG~nGaGKSTLL~~L~G~~-~~~~~~~G~I~~~G~-~---~~ 124 (497)
.|+++|+. .|. .. ++|+|... +|++++|+|||||||||||++|++.+ .+. .+....+.. . ..
T Consensus 5 ~i~l~nf~-~y~-----~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~---~~~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PFR-----EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT---PRYGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-CcC-----Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc---cccccchhHHHHhcCC
Confidence 47777776 442 12 55666543 58999999999999999999999643 221 333332211 1 11
Q ss_pred CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH
Q 010936 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 125 ~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 204 (497)
.....+++++|++.... ++..+. .++..+..+.+ .+...++.+..++ .+..|||||+||++
T Consensus 73 ~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~~ 133 (213)
T cd03279 73 EDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLAS 133 (213)
T ss_pred CccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHHH
Confidence 12346889998763311 111110 22222221111 2333334444444 44579999999999
Q ss_pred HHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 205 IALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 205 IA~aL~~----------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
||++|+. +|+++||||||+|||+.+...+.+.|++++++|.|||++||++ ..+...+|++++|++|.
T Consensus 134 la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 9999985 6789999999999999999999999999987789999999996 57888999999999874
No 380
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=9.4e-27 Score=249.29 Aligned_cols=197 Identities=27% Similarity=0.382 Sum_probs=161.0
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...|+++|+++.-+ ..+..|++.++.+++|+-+.|.||||||||||+|+|+|+.+.+ +|+|.+- ...
T Consensus 390 ~~~i~~~nl~l~~p----~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~~~ 456 (604)
T COG4178 390 DHGITLENLSLRTP----DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------ADS 456 (604)
T ss_pred cceeEEeeeeEECC----CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------CCC
Confidence 45799999999875 3458999999999999999999999999999999999999876 7887653 123
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-cccCCCCHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN-WHLRGISGGERRRVSIAL 207 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~~~LSgGerqRv~IA~ 207 (497)
.+-|+||.|.+... |.+|-+.|..... ..+ ++.+.++|.++||.+..++.=+. ..-+.||+||||||++||
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafAR 528 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAAP---DFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFAR 528 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCCC---CCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHH
Confidence 57899999998887 9999998864321 122 34577889999998765442211 134579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
.|+++|++++|||.|++||+.++..+.+.+++-. .+.|||-+.|++ .+..+.++.+-+.
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccch--hhHHHHhhheeec
Confidence 9999999999999999999999999999998743 379999999996 4677777766654
No 381
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=4.6e-26 Score=235.61 Aligned_cols=221 Identities=26% Similarity=0.374 Sum_probs=188.8
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-CC-
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL- 125 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~-~~- 125 (497)
....++++||++.-. .....+++|||++++||++||.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. ..
T Consensus 254 g~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~ 326 (501)
T COG3845 254 GEVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRL 326 (501)
T ss_pred CCeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccC
Confidence 456799999998753 2356899999999999999999999999999999999999775 69999999985 11
Q ss_pred -----CcCcEEEEcCCC---CCCCCCCHHHHHHHHhhccC----CCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccc
Q 010936 126 -----SFGTAAYVTQDD---NLIGTLTVRETISYSARLRL----PDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHL 192 (497)
Q Consensus 126 -----~~~~i~yv~Q~~---~l~~~lTV~e~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~ 192 (497)
....++|||+|. .+.+.+|+.||+.+...-+. ..-+.+...++.+.++++.+++... .+. ..
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~-----~a 401 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA-----PA 401 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc-----ch
Confidence 124589999985 57789999999998754321 1124567788889999999998632 233 34
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
+.||||.+||+-+||+|..+|++|++.+||.|||..+...|.+.|.++++.|+.|++++-+. +|++.+||||.+|.+|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCc
Confidence 67999999999999999999999999999999999999999999999999999999999995 79999999999999999
Q ss_pred EEEEeCchh
Q 010936 273 TVYFGETSA 281 (497)
Q Consensus 273 iv~~G~~~~ 281 (497)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 998877765
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=2.4e-26 Score=270.76 Aligned_cols=137 Identities=23% Similarity=0.307 Sum_probs=112.8
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHH---hCCC
Q 010936 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEIL---MRPR 214 (497)
Q Consensus 139 l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~---~~p~ 214 (497)
.+..+||.|+|.++..-.........+..+++ ++++.+||.+. .+.. +.+|||||+|||+||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 46678999999987653211111233444556 58889999765 5654 4579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee------CCeEEEEeCchhHH
Q 010936 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS------GGKTVYFGETSAAF 283 (497)
Q Consensus 215 lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 283 (497)
+|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ +.||++++|. +|++++.|+++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999988899999999996 456 8999999996 78999999998875
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=8.3e-27 Score=223.45 Aligned_cols=164 Identities=19% Similarity=0.215 Sum_probs=124.0
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHH----cCCCCCCCceeEEEECCEecC--CCcCcEEEEcCCC-----CCCCC
Q 010936 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALS----SRLASNAFLSGTILLNGHKTK--LSFGTAAYVTQDD-----NLIGT 142 (497)
Q Consensus 74 ~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~----G~~~~~~~~~G~I~~~G~~~~--~~~~~i~yv~Q~~-----~l~~~ 142 (497)
..++++.+| +++|+|||||||||||++|. |...++ +|.+..+..... .....+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 877664 555541111111 1234688999987 33455
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH------HHHHHHHHhCCCEE
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR------VSIALEILMRPRLL 216 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~IA~aL~~~p~ll 216 (497)
+|+.|++.+.. . ..+++.+ +. .++.||+||+|| ++||++++.+|+++
T Consensus 91 ~~~~~~~~~~~---------~----~~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 91 LAILENVIFCH---------Q----GESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hhHhhceeeec---------h----HHHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 68888876531 1 1122333 22 446799999996 78999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 217 FLDEPTSGLDSAAAF-FVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 217 lLDEPTsgLD~~~~~-~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
++||||++||+.++. .+.+.|++++++ |.|||++||++ . ....||+++.|.+
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~-~~~~~d~i~~l~~ 197 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-E-LVDAADHIYRVEK 197 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-H-HHhhCCEEEEEee
Confidence 999999999999999 999999999876 89999999995 3 4578999999963
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=2.4e-25 Score=252.52 Aligned_cols=125 Identities=29% Similarity=0.387 Sum_probs=106.3
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEE
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFL 218 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p---~lllL 218 (497)
|||.|++.|...+. . .....+.|+.+||.. ..+.. +.+|||||+||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875432 1 123467899999975 34554 4579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ ..||+|+.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999988899999999996 444 689999999 799999999988764
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=4.5e-26 Score=212.10 Aligned_cols=229 Identities=20% Similarity=0.256 Sum_probs=178.0
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCC-ceeEEEECCEec-----CC
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF-LSGTILLNGHKT-----KL 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~-~~G~I~~~G~~~-----~~ 125 (497)
+.++||+..+....+ ...++++||+++..||+-|++|+||||||-..|+|+|..+.+-. +.-...+++.+. ..
T Consensus 4 LDIrnL~IE~~TsqG-~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTSQG-WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecCCC-ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 567889888876543 46799999999999999999999999999999999998765211 122334555432 11
Q ss_pred C----cCcEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCH---HHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 010936 126 S----FGTAAYVTQDDN--LIGTLTVRETISYSARLRLPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (497)
Q Consensus 126 ~----~~~i~yv~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (497)
+ .+.+++++|++. +-|.-+|...+--....+...+..+ .-++.++-++|.++|+.+..|-. ..|+.+|.
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElT 160 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELT 160 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhc
Confidence 1 135789999974 4455455444433322222122111 12456788899999998866643 45899999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
-||-|+|.||.|++..|++|+.||||+.+|+.++.+|..+|.++.+ +|.||++++||. ..+.+.||++-+|.=|+-++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~E 239 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTVE 239 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEeccccc
Confidence 9999999999999999999999999999999999999999999987 599999999996 67999999999999999999
Q ss_pred EeCchhHHH
Q 010936 276 FGETSAAFE 284 (497)
Q Consensus 276 ~G~~~~~~~ 284 (497)
.++.+++++
T Consensus 240 Sa~~e~l~~ 248 (330)
T COG4170 240 SAPSEELVT 248 (330)
T ss_pred ccchhHHhc
Confidence 999988764
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2.2e-24 Score=244.41 Aligned_cols=125 Identities=26% Similarity=0.347 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHh---CCCEEE
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILM---RPRLLF 217 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~---~p~lll 217 (497)
.|||.|.+.|...+. . .....++++.+||... .++. +.+|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777765432 1 1134578888999752 4543 45799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhH
Q 010936 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAA 282 (497)
Q Consensus 218 LDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 282 (497)
|||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ ..||++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999988899999999996 444 679999999 79999999998764
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=3.6e-25 Score=230.10 Aligned_cols=214 Identities=23% Similarity=0.305 Sum_probs=146.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC-cC
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FG 128 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-~~ 128 (497)
-.+.+.|+|+.+ ..+.+++|++|++.+|+-+||+|+|||||||+|++|+|...|... +=.++.-.+..... ..
T Consensus 74 ~dvk~~sls~s~-----~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~-~~d~y~ls~e~~ps~~~ 147 (614)
T KOG0927|consen 74 RDVKIESLSLSF-----HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE-HIDFYLLSREIEPSEKQ 147 (614)
T ss_pred ccceeeeeeecc-----CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc-ccchhhhcccCCCchHH
Confidence 358999999998 468899999999999999999999999999999999999887421 11222222211100 00
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhc-cC--C--------------CCCCHHHHHHHHHHHHHHcCC-CccccccccCc
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARL-RL--P--------------DKMPWSEKRTLVERTIIEMGL-QDCADTVIGNW 190 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~-~~--~--------------~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~ 190 (497)
.+-++.+ +.-..+.-+.+...- .. + ..+..+....++..+|..+|. ++..++.+
T Consensus 148 av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~--- 219 (614)
T KOG0927|consen 148 AVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV--- 219 (614)
T ss_pred HHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh---
Confidence 0001110 000111111111000 00 0 012223344556667776665 34556544
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
.++|||+|.|++|||+|..+|++|+|||||+|||..+...+-+.|.+... .++|+++|. .+.+-.+|.+|+.|++
T Consensus 220 --~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~-QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 220 --KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS-QDFLNGVCTNIIHLDN 294 (614)
T ss_pred --hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc-hhhhhhHhhhhheecc
Confidence 57999999999999999999999999999999999999999998876522 289999998 5789999999999999
Q ss_pred CeE-EEEeCchhH
Q 010936 271 GKT-VYFGETSAA 282 (497)
Q Consensus 271 G~i-v~~G~~~~~ 282 (497)
++. .|.|+.+..
T Consensus 295 kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 295 KKLIYYEGNYDQY 307 (614)
T ss_pred cceeeecCCHHHH
Confidence 995 556776554
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=220.70 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=152.6
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...++|.++++.+. ---|.-=.+++..||+++++||||-||||+.++|+|.++|+ +|+ .. .-
T Consensus 340 ~~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~-----~~ 401 (591)
T COG1245 340 DTLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE-----DL 401 (591)
T ss_pred ceeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc-----cc
Confidence 45678888888772 22456667788889999999999999999999999999996 776 11 12
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 208 (497)
+++|=||--.--...||.+.|.-......... -...++++-|.|++..++.+. +|||||.|||+||.+
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~ 469 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS-------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAA 469 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhhcccc-------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHH
Confidence 57888886544456799998876654321111 224567788899888888664 699999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|.+++++++||||++.||.+.+..+.+.|++... .++|.+++-||. ..+.-++||+++..
T Consensus 470 L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 470 LSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred hccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 9999999999999999999999999999999987 489999999996 46677789998874
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=7.6e-25 Score=227.68 Aligned_cols=202 Identities=20% Similarity=0.257 Sum_probs=158.8
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCc
Q 010936 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~ 127 (497)
++..+.++|+++.|.. +-.++++++|-+..++.++++||||+|||||||++.|.+.|. .|.|.-.-+
T Consensus 386 p~pvi~~~nv~F~y~~----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSD----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCCC----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---ccccccccc------
Confidence 4557899999999952 237999999999999999999999999999999999999995 788754322
Q ss_pred CcEEEEcCC--CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHH
Q 010936 128 GTAAYVTQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 128 ~~i~yv~Q~--~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ 204 (497)
-.+++..|. +.+.-..++-|++.=... .....+.+..+|.++||... .+.+ .++||+|||+||.
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~~~--------~~~~~e~~r~ilgrfgLtgd~q~~p-----~~~LS~Gqr~rVl 519 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPKFP--------DEKELEEMRSILGRFGLTGDAQVVP-----MSQLSDGQRRRVL 519 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHhcc--------ccchHHHHHHHHHHhCCCccccccc-----hhhcccccchhHH
Confidence 234455554 334445577777653321 11234567889999999844 4444 4579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-EEeCc
Q 010936 205 IALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGET 279 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~ 279 (497)
.|+.++..|.+|+|||||+|||..+...+.+.|.++ .-+||++|||. -.|.+++++|.+..+|.+. +.|+.
T Consensus 520 Fa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 520 FARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999999988775 35899999995 5789999999999887764 44544
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=3.8e-24 Score=204.16 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=120.9
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe----c--CCCcCcEEEEcCCCCCCCCCCH
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----T--KLSFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~----~--~~~~~~i~yv~Q~~~l~~~lTV 145 (497)
++++++.+.+| +.+|+|||||||||||.+|....... .. ...-|.. + ......+.+++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~---~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGK---AS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCC---cc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 46788888888 88999999999999999997433221 00 0011211 0 1112357788887665541
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCC
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI----LMRPRLLFLDEP 221 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL----~~~p~lllLDEP 221 (497)
. .. ......++++++. .+..++. ++.||+|||||++||++| +.+|++++||||
T Consensus 84 --------~------~~-~~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 --------P------LC-VLSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred --------c------CC-HHHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 0 00 1113456677765 4445554 457999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010936 222 TSGLDSAAAFFVTQTLRCLSRD---GRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~---g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
|+|||+.++..+.+.|+++.++ +.|||+++|++ .++.+ +|+|.+|+.++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-ccccc-ccceeEEEecC
Confidence 9999999999999999998653 36899999996 46665 49999998754
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=3.2e-24 Score=211.44 Aligned_cols=179 Identities=22% Similarity=0.238 Sum_probs=119.5
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec--C---C-----CcCc--EEEEcCCCCC-CCCCCH
Q 010936 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT--K---L-----SFGT--AAYVTQDDNL-IGTLTV 145 (497)
Q Consensus 79 i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~--~---~-----~~~~--i~yv~Q~~~l-~~~lTV 145 (497)
..++ +++|+|||||||||||++|++.+.+. .|++..++... . . .... +.|..|++.. .-.-++
T Consensus 20 ~~~~-~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~ 95 (247)
T cd03275 20 PFDR-FTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRII 95 (247)
T ss_pred CCCC-eEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEE
Confidence 3344 99999999999999999999988653 46665443210 0 0 0112 3344443221 001111
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccCc--------ccCCCCHHHHHHHHHHHH
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---------VIGNW--------HLRGISGGERRRVSIALE 208 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~~--------~~~~LSgGerqRv~IA~a 208 (497)
.+... ..+.. + .......++++++.+|+...... .+.+. .+..||||||||++||++
T Consensus 96 ~~~~~---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~a 169 (247)
T cd03275 96 TGGSS---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALL 169 (247)
T ss_pred ECCce---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHH
Confidence 11100 00101 1 01112346788888898533111 11111 237899999999999999
Q ss_pred HHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 209 ILMR----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 209 L~~~----p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
++.+ |+++||||||+|||+..+..+.+.|++++++|.+||++||++ ++...||++++|.
T Consensus 170 l~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 170 FAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred HHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 9875 899999999999999999999999999987799999999994 5678999999996
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=5e-24 Score=220.50 Aligned_cols=204 Identities=21% Similarity=0.253 Sum_probs=146.0
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...|...+.+..| +.+.+|++-++++..|.-+||+|+||+|||||||+|+. |.|.....+...
T Consensus 78 ~~Di~~~~fdLa~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~--- 140 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV--- 140 (582)
T ss_pred ccceeeeeeeeee-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe---
Confidence 4568888888888 56889999999999999999999999999999999984 333322211100
Q ss_pred cEEEEcCC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH
Q 010936 129 TAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 129 ~i~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
.-.|++-. ..+...+++.+.+.--..+. ... +..+...++|..+|..+..-. ...++||||.|-|++|||
T Consensus 141 ~g~~t~~~~~~l~~D~~~~dfl~~e~~l~--~~~---~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 141 RGDDTEALQSVLESDTERLDFLAEEKELL--AGL---TLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLALAR 211 (582)
T ss_pred eccchHHHhhhhhccHHHHHHHHhhhhhh--ccc---hHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHHHH
Confidence 01233322 22333333333332211110 011 223334448888998654321 244679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE-EEEeCchhH
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT-VYFGETSAA 282 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~ 282 (497)
||..+|+||||||||+.||..+..-+.+.|..+ ..|+|++||| +..+-..|..|+.+++-++ .|.|+-++.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999999999999998776 4799999999 6788899999999987776 355765543
No 393
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.89 E-value=2e-22 Score=211.10 Aligned_cols=204 Identities=20% Similarity=0.268 Sum_probs=158.4
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..+++++++..-+. .+..+++|+||+|..|+-+.|.||||||||+||++|+|+.+.. +|.+..-... ..+.
T Consensus 432 n~i~~e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~---~~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDG---GPKD 502 (659)
T ss_pred ceEEeeeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccC---CCCc
Confidence 56999999987642 1466889999999999999999999999999999999999864 8988754321 1256
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCcccCCCCHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV------IGNWHLRGISGGERRRV 203 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------vg~~~~~~LSgGerqRv 203 (497)
+-|+||.|.+.-. |.||-+.|....-. ...+...++++.+.|+.++|.|..++. +--..-..||+||+||+
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 8899999988766 99999988743211 111112234566777777776543322 21123457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+.||-+.++|++-||||-||++|......+.+.++++ |.|.|-+.|..+ +.+.=|.++-|+.
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 9999999999999999999999999998888887664 999999999963 6777788888874
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.3e-22 Score=203.85 Aligned_cols=191 Identities=27% Similarity=0.360 Sum_probs=152.0
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
+..+-+.|+++.|+ +.++++++++|-|.-...+||+||||.||||||++|.|-+.|. .|+.+-| ++-
T Consensus 584 PPvLGlH~VtFgy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKn------hrL 650 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKN------HRL 650 (807)
T ss_pred CCeeecccccccCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhcc------cee
Confidence 44688999999985 5688999999999999999999999999999999999999996 6766433 233
Q ss_pred cEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH
Q 010936 129 TAAYVTQDD--NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 129 ~i~yv~Q~~--~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 206 (497)
+||+..|.. .+-..-|.-|+|.-...+ +. +.+...|-.+||...++|. .+..|||||+-||++|
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyLqr~FNl------py----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYLQRKFNL------PY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeechhhhhHHhhccccCHHHHHHHhcCC------Ch----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHH
Confidence 688888863 455556787877654322 22 2355678889999888885 5678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
.--+..|+||||||||++||..+...+.+.|.+. .-.||+++||-. .+.+---.++++.+
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEcc
Confidence 9999999999999999999999999999988776 458999999953 34444445566554
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.88 E-value=1.1e-21 Score=182.32 Aligned_cols=210 Identities=22% Similarity=0.280 Sum_probs=159.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC----
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|++.++.|.|+. .-+++-|+|++++.|.-..++|.||||||||||+|+|-.-.. .|.|.++|.+.-.
T Consensus 12 ~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTSL 84 (291)
T ss_pred ceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccccc
Confidence 45999999999963 348999999999999999999999999999999999975443 5899999986311
Q ss_pred -CcCcEEEEcCC----------CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 010936 126 -SFGTAAYVTQD----------DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (497)
Q Consensus 126 -~~~~i~yv~Q~----------~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (497)
......|+--+ -.+-..+++.+ +.|+.. .... ++-+++++.+.+.-. .+.+.
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~-mifgV~-----g~dp----~Rre~LI~iLDIdl~-------WRmHk 147 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVG-----GDDP----ERREKLIDILDIDLR-------WRMHK 147 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHH-HHhhcc-----CCCh----hHhhhhhhheeccce-------EEEee
Confidence 11223443221 12233556644 344422 1111 344566666666421 13356
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
+|-|||+||.|++.|++.=++|+|||-|--||..++..+++.+++-+++ |.|||..||.- +-+.....+++.|++|++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl 226 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKL 226 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCee
Confidence 9999999999999999999999999999999999999999999998874 99999999995 678899999999999999
Q ss_pred EEEeCchhHHH
Q 010936 274 VYFGETSAAFE 284 (497)
Q Consensus 274 v~~G~~~~~~~ 284 (497)
+-.-+.+++.+
T Consensus 227 ~~~l~~~~i~e 237 (291)
T KOG2355|consen 227 VDNLKYQKIKE 237 (291)
T ss_pred eeccccchhhh
Confidence 87555554443
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.87 E-value=5.9e-22 Score=189.21 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=109.4
Q ss_pred eeceEEEEeCCe-EEEEECCCCChHHHHHHHHH--------cCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCC
Q 010936 72 LEGLTGYAEPGT-LTALMGPSGSGKSTLLDALS--------SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (497)
Q Consensus 72 L~~vs~~i~~Ge-~~aIlG~nGaGKSTLL~~L~--------G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~ 142 (497)
.-++|+++.+|+ +++|.|||||||||||++|+ |...|. .. ...++|+.|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~---~~------------~~~~~~~~~~~~---- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA---AE------------GSSLPVFENIFA---- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc---cc------------cccCcCccEEEE----
Confidence 457999999994 89999999999999999998 332221 00 011233333211
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPT 222 (497)
.++..+..+. ....+|+||||++.|+++ +.+|+++++|||+
T Consensus 78 ---------------------------------~lg~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 78 ---------------------------------DIGDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ---------------------------------ecCchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 0111111111 223699999999999987 4899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010936 223 SGLDSAAAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 223 sgLD~~~~~~i~-~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
+|||+..+..+. ..++.+.+.|.++|++||+ .++..+||+++.|++|++.+.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 999999999996 4678887778999999998 3678999999999999998764
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=1.2e-21 Score=188.91 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=69.1
Q ss_pred ccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCCChHHHhcCC-
Q 010936 191 HLRGISGGERRRVSIALEI----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-G-RTVIASIHQPSSEVFELFD- 263 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL----~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~tvI~~tH~~~~~i~~~~D- 263 (497)
.+.+||||||||+.+|++| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+. .++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~-~~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL-LPGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh-ccCCcccCc
Confidence 4568999999998877554 5899999999999999999999999999999776 5 5899999995 35667776
Q ss_pred -eEEEeeCCe
Q 010936 264 -RLYLLSGGK 272 (497)
Q Consensus 264 -~v~~L~~G~ 272 (497)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.86 E-value=9.8e-22 Score=200.87 Aligned_cols=169 Identities=29% Similarity=0.439 Sum_probs=130.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-------------CC-------Cc----CcEEEE
Q 010936 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-------------KL-------SF----GTAAYV 133 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~-------------~~-------~~----~~i~yv 133 (497)
+.++|+++||+|+||-||||-+|+|+|.+.|+ =|+ .++.+. .. .. .+.-||
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PN---LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYV 170 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN---LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYV 170 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccC---CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHH
Confidence 35799999999999999999999999999986 232 122110 00 00 112233
Q ss_pred cCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 010936 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (497)
Q Consensus 134 ~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p 213 (497)
.--|..+.. ||.|-|.-.. .+-..+++++.++|.+..|+.+. .|||||-||++||.++++++
T Consensus 171 d~iPk~~KG-~v~elLk~~d------------e~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdA 232 (591)
T COG1245 171 DLIPKVVKG-KVGELLKKVD------------ERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDA 232 (591)
T ss_pred HHHHHHhcc-hHHHHHHhhh------------hcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccC
Confidence 333334444 6766654321 12347889999999999998775 69999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 214 ~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+++++|||||-||...+....+.++++++.+++||++.||+ .-+--++|-|.++..
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 99999999999999999999999999998899999999995 455556888888863
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=7.6e-21 Score=197.07 Aligned_cols=197 Identities=23% Similarity=0.267 Sum_probs=155.5
Q ss_pred eEEEEEeEEEEEEccCCccc-ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcC
Q 010936 50 ARLTWKDLTVMVTLSNGETH-NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
..+++.++++.|+. .. +++.++++.++.-.-.+++|+||+||||++|++.|-..|. .|.+.+.+ +.
T Consensus 361 p~l~i~~V~f~y~p----~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~------r~ 427 (582)
T KOG0062|consen 361 PNLRISYVAFEYTP----SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP------RL 427 (582)
T ss_pred CeeEEEeeeccCCC----cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc------cc
Confidence 45889999988853 33 7999999999999999999999999999999999987764 78776654 35
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHH
Q 010936 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~ 207 (497)
+++|-.|...=+-.+.|.+.- +....+ | +.+. +.+.+-+..+||+.. +.. ...+||||||=||++|.
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~~----ee~r~hl~~~Gl~g~la~~-----si~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKTE----EEIRRHLGSFGLSGELALQ-----SIASLSGGQKSRVAFAA 495 (582)
T ss_pred eecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCCH----HHHHHHHHhcCCCchhhhc-----cccccCCcchhHHHHHH
Confidence 688988865434344554432 222222 2 2232 346677888999643 332 24579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEE
Q 010936 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
....+|.+|+|||||+.||..+-..+.+.|+.. +-.||++||+ ...+..+|+.+++.++|++.-
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999888776 4589999999 578999999999999999864
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.84 E-value=3.6e-20 Score=173.81 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 195 ISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 195 LSgGerqRv~IA~aL~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
||||||||++||++|+ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++ +....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999987789999999995 35678999999964
No 401
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=6.1e-19 Score=208.64 Aligned_cols=128 Identities=26% Similarity=0.338 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEE
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFL 218 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~---p~lllL 218 (497)
.|||.|.+.|.... .+-.+.-+.|..+||... .+|. ...+|||||.||+-||..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl---~LGq-~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPFL---------KKIQKPLQALIDNGLGYL---PLGQ-NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhcc---------HHHHHHHHHHHHcCCCee---eCCC-cCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 36777777765321 122345678888999643 2332 4567999999999999999875 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHHH
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (497)
||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.||.|+-| +.|++++.|+|+++..
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999999995 577789999999 4679999999998754
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=5.3e-19 Score=191.60 Aligned_cols=128 Identities=31% Similarity=0.448 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEE
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP---RLLFL 218 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p---~lllL 218 (497)
.|||.|...|+... + .-.+..+.|..+||.-. .+|. ...+|||||.|||-||.+|.... -+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 36777777776432 1 12334567778898632 3443 55689999999999999999877 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHHH
Q 010936 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (497)
||||+||-......+++.|.+|..+|-|||++.|++ ++.+.||.|+-| ..|++++.|+|+++..
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999995 588999999998 4689999999999864
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.81 E-value=5.6e-20 Score=175.55 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=106.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.+... ..+++|.+.+|+.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchhc
Confidence 45788887765 79999999999999999999987542 1123433221 1366777788999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
+.++... ...+ ..++.++++.+++ .+|+++|+||||+|||+.
T Consensus 80 l~~~~s~------~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGISY------FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccCh------HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 9875421 1222 2456777766552 689999999999999999
Q ss_pred HHHHHH-HHHHHHHhCCCEEEEEeCCCChHHHhc--CCeEEE
Q 010936 229 AAFFVT-QTLRCLSRDGRTVIASIHQPSSEVFEL--FDRLYL 267 (497)
Q Consensus 229 ~~~~i~-~~L~~l~~~g~tvI~~tH~~~~~i~~~--~D~v~~ 267 (497)
.+..+. ..++.+.+.|.|+|++||++ ..+..+ .++|..
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~ 162 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRN 162 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEE
Confidence 998775 47888877789999999996 444433 344444
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.81 E-value=4.1e-20 Score=179.35 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=115.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE-EEcCCCCCCCCCCHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA-YVTQDDNLIGTLTVR 146 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~-yv~Q~~~l~~~lTV~ 146 (497)
.+.+.+|++++..+|++++|.||||+||||||++++-.. ...++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------------~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-------------------LMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-------------------HHHHhCCCcCcccEEEe-----
Confidence 356899999999999999999999999999999997110 001222 5555432111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---
Q 010936 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL--~~~p~lllLDEP--- 221 (497)
.+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 123344555665332 246999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010936 222 TSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|++||+...... .++.+.+ .|.++|++||+ .++.++||++..+++|++...++
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3345544 48999999997 57899999999999999987764
No 405
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.80 E-value=1.3e-19 Score=187.95 Aligned_cols=194 Identities=23% Similarity=0.304 Sum_probs=138.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCc
Q 010936 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|.++|+-+-.+ ....++..++|.+++|--+.|+||||||||+|+++|+|+.+-. .|...+ ....+
T Consensus 480 ~gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy---~g~L~~------P~~~~ 546 (728)
T KOG0064|consen 480 NGIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVY---NGLLSI------PRPNN 546 (728)
T ss_pred cceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCccc---CCeeec------CCCcc
Confidence 3478888876553 3456889999999999999999999999999999999998753 454432 22345
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhcc--CCCCCCHHHHHHHHHHHHHHcCCCccccccccC----cccCCCCHHHHHHH
Q 010936 130 AAYVTQDDNLIGTLTVRETISYSARLR--LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN----WHLRGISGGERRRV 203 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----~~~~~LSgGerqRv 203 (497)
+-|+||.|.+--. |.+|-+-|.-..- ...+... +....+|..+.|++...+-.|= ..-.-||||||||+
T Consensus 547 mFYIPQRPYms~g-tlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~ 621 (728)
T KOG0064|consen 547 IFYIPQRPYMSGG-TLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRM 621 (728)
T ss_pred eEeccCCCccCcC-cccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHH
Confidence 8999999877633 7777766542110 0012222 2344555555555443332220 12235999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
++||.+.+.|+.-+|||-||+..+.....+.+..++ .|.+.|-++|+|+ +..+-.+++
T Consensus 622 ~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~h~~ll 679 (728)
T KOG0064|consen 622 GMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKYHTHLL 679 (728)
T ss_pred HHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHHHHHHH
Confidence 999999999999999999999998888877776654 4999999999986 455444333
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=4.5e-19 Score=179.62 Aligned_cols=185 Identities=26% Similarity=0.370 Sum_probs=138.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC-----CCCceeEEEECCEecCCCcCcEEEEcCCCC-CCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS-----NAFLSGTILLNGHKTKLSFGTAAYVTQDDN-LIG 141 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~-----~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~-l~~ 141 (497)
...+|+|||++++||++++|+|+|||||||||++|+|.... ..+.+|.|.+--. ...+.+|-+.- -|.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n------t~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN------TVSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc------chhhccCcccccccC
Confidence 35799999999999999999999999999999999997532 1124676655221 12345555422 233
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010936 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEP 221 (497)
..|+.|.+.-- ... -..+.++|...||.+.. .-....++||-|||.|+.||.++...|.+++.||-
T Consensus 469 ~~tilehl~s~-----tGD------~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 469 EVTILEHLRSK-----TGD------LNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred chhHHHHHhhc-----cCc------hhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 45666665311 111 12356789999997532 11225568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhc-CCeEEEeeCCeE
Q 010936 222 TSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFEL-FDRLYLLSGGKT 273 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~i 273 (497)
.|.||+.++..+..-|.+++++ |.|++++||+| +.+-++ =|.++.+.-|.+
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v 587 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKV 587 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeecccc
Confidence 9999999999999999999875 99999999997 445555 588888765554
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=7e-19 Score=176.31 Aligned_cols=76 Identities=30% Similarity=0.428 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
.|||||+||++||++++. +|+++++||||++||+.+...+.+.|+++.+ +.|+|++||++. +...||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999963 678999999998
Q ss_pred CCe
Q 010936 270 GGK 272 (497)
Q Consensus 270 ~G~ 272 (497)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.79 E-value=3.1e-19 Score=164.84 Aligned_cols=75 Identities=31% Similarity=0.418 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 194 GISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.++|.++|++||++ ++...+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 399999999999999987 7899999999999999999999999998866689999999995 4667899999996
Q ss_pred C
Q 010936 270 G 270 (497)
Q Consensus 270 ~ 270 (497)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.77 E-value=3e-18 Score=195.01 Aligned_cols=136 Identities=25% Similarity=0.390 Sum_probs=109.9
Q ss_pred CCCCCHHHHHHHHhhccCCCC-CC-----HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhC
Q 010936 140 IGTLTVRETISYSARLRLPDK-MP-----WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (497)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~-~~-----~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 212 (497)
+..|||.|.+.|...+..+.. .. ..+...+++ .|+.+||.+. .|+.+ .+|||||+|||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 456899999999654422110 00 012334453 6888899765 67755 47999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 213 p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
| ++|+|||||+|||+..+..+++.|+++++.|.|||+++|++ .++ ..||+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 99999999999999999999999999988899999999996 455 469999999 999999999998864
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.76 E-value=6e-19 Score=168.69 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=103.4
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhh
Q 010936 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (497)
Q Consensus 75 vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (497)
.++++.+|++++|+|||||||||||++|++..-.. ..|... ......++|..|. +..++..+
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~--~~g~~~------~~~~~~i~~~dqi---~~~~~~~d------- 83 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA--QIGCFV------PAESASIPLVDRI---FTRIGAED------- 83 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH--HcCCCc------cccccccCCcCEE---EEEecCcc-------
Confidence 45556689999999999999999999999532110 122110 0001122332221 11111111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 010936 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (497)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~ 234 (497)
.... ..+.+|++++| +..+.+++.+|+++|+||||+|||+.....+.
T Consensus 84 ---------------------------~i~~-----~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 84 ---------------------------SISD-----GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ---------------------------cccC-----CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 1111 11246666665 66667889999999999999999999988876
Q ss_pred H-HHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 235 Q-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 235 ~-~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
. +++.+.+.+.++|++||++ ++...++++..+..|++...++..+
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 5666766789999999994 5778899999999999988876544
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=6.2e-18 Score=192.12 Aligned_cols=135 Identities=27% Similarity=0.355 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHHhhccCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC
Q 010936 141 GTLTVRETISYSARLRLPDKMPW------SEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p 213 (497)
..|||.|.+.|...+........ .+...++ +.+..+||... .++. +.+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCC
Confidence 46899999988866532210000 1112222 34677788654 4554 4579999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010936 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 214 --~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
.+|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 89999999999999999999999999988899999999995 455 589999999 899999999988864
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=7e-19 Score=178.79 Aligned_cols=209 Identities=23% Similarity=0.342 Sum_probs=150.3
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC---CCCCCceeEEEECCEecC-
Q 010936 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL---ASNAFLSGTILLNGHKTK- 124 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~---~~~~~~~G~I~~~G~~~~- 124 (497)
.+.|.++|.+.+. ..+.++.|-|++|-.|..++++||||-||||||+-|+.+- +| .=+|++..+.+.
T Consensus 262 a~DIKiEnF~ISA-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----nIDvLlCEQEvva 332 (807)
T KOG0066|consen 262 AMDIKIENFDISA-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----NIDVLLCEQEVVA 332 (807)
T ss_pred cccceeeeeeeec-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----CCceEeeeeeeee
Confidence 4678899988887 4578899999999999999999999999999999999763 33 234444443210
Q ss_pred -----------CCcCcEEEEcCCCC-----CCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCcc-cccc
Q 010936 125 -----------LSFGTAAYVTQDDN-----LIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTV 186 (497)
Q Consensus 125 -----------~~~~~i~yv~Q~~~-----l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ 186 (497)
...++...+..+.. --...|+.|-+.-.+ .++. +.....+.++..+|.-+|.+.. .++
T Consensus 333 d~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~r- 408 (807)
T KOG0066|consen 333 DSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQER- 408 (807)
T ss_pred cCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcC-
Confidence 00111111111110 112346666554332 2221 1122345667788988888653 333
Q ss_pred ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 187 vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
....+|||.|-||++||||...|-+|.|||||+.||..+...+-++|+.+. +|.+|++||- ..+...|..|+
T Consensus 409 ----Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdII 480 (807)
T KOG0066|consen 409 ----PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDII 480 (807)
T ss_pred ----CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHh
Confidence 335699999999999999999999999999999999999888888988874 5999999995 68899999999
Q ss_pred EeeCCeEEEE-eC
Q 010936 267 LLSGGKTVYF-GE 278 (497)
Q Consensus 267 ~L~~G~iv~~-G~ 278 (497)
.|++-++-|+ |.
T Consensus 481 HLD~qkLhyYrGN 493 (807)
T KOG0066|consen 481 HLDNQKLHYYRGN 493 (807)
T ss_pred hhhhhhhhhhcch
Confidence 9998887544 54
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=4.7e-17 Score=162.58 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=63.5
Q ss_pred cCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010936 192 LRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~---------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
..-+|+||+|+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+. ..+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccchh
Confidence 3458999999999999985 7999999999999999999999999997752 355555553 4566777
Q ss_pred ---CeEEEeeCCeE
Q 010936 263 ---DRLYLLSGGKT 273 (497)
Q Consensus 263 ---D~v~~L~~G~i 273 (497)
++++.|++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.70 E-value=2.9e-17 Score=157.36 Aligned_cols=135 Identities=20% Similarity=0.271 Sum_probs=98.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcE-EEEcCCCCCCCCCCHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA-AYVTQDDNLIGTLTVR 146 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i-~yv~Q~~~l~~~lTV~ 146 (497)
++.+.+|+++++++|++++|+||||+|||||++++++..-- + ++ .|| +..++.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a--------------~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----A--------------QIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----H--------------HcCCCc---chhhcCccCh
Confidence 45789999999999999999999999999999999876311 0 11 133 3334555666
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 010936 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD 226 (497)
|++... ++..+..+. ..+.+|+|++|+ ..+.+++.+|+++|||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 665322 222221222 224689999975 56667889999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhCCCEEEEEeCCC
Q 010936 227 SAAAFFVT-QTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 227 ~~~~~~i~-~~L~~l~~~g~tvI~~tH~~ 254 (497)
+.....+. ..++.+.+.|.++|++||+.
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 98766654 46777777799999999994
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.69 E-value=1e-16 Score=155.03 Aligned_cols=157 Identities=18% Similarity=0.136 Sum_probs=108.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
+.+.+|++++.++ ++++|+|||||||||||+++++..-. |+ .|.........++|+.| +++.+++.|+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhh
Confidence 4588999999887 99999999999999999999875321 11 12222212245666654 5677777776
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH--HHHHHHHHHHHHHhCCCEEEEeCC---CC
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG--GERRRVSIALEILMRPRLLFLDEP---TS 223 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~IA~aL~~~p~lllLDEP---Ts 223 (497)
+..+. |. .|.++++-+...+.+|+++||||| |+
T Consensus 86 ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 86 LAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 64331 11 122233333334579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
++|.... ....++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++.
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 8887552 23445555555 89999999994 678899998888899988877766553
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.61 E-value=3.1e-15 Score=152.40 Aligned_cols=178 Identities=22% Similarity=0.334 Sum_probs=136.4
Q ss_pred ccceeeceEEEEeCC-----eEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCC
Q 010936 68 THNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142 (497)
Q Consensus 68 ~~~iL~~vs~~i~~G-----e~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~ 142 (497)
.+.-+-+..+.|+.| |++..+|.||.|||||+++++|+++|+ ..|+|-. -.++|=||...--..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~p~---------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEIPV---------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCcccc---------cceeccccccCcccc
Confidence 355677888888877 578899999999999999999999986 2333321 246788887554444
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPT 222 (497)
-||++.+.--.+- .-...+.+.++++-|.+++..|..| .+|||||.|||+||..|-..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5888876432111 1112356778888888887777655 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 223 SGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
+-||++.+...-+.+++.. +..+|-.++.||.. ...-++|||++..
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 9999999999999999864 45799999999953 3445789987753
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.59 E-value=4.1e-15 Score=148.09 Aligned_cols=138 Identities=28% Similarity=0.322 Sum_probs=93.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC---C---cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---S---FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 83 e~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~---~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
.-++|+||||||||||+++|+|.++++ +|+|.++|++... . ...+++++|.+ +.+.++|.++..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k----- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK----- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH-----
Confidence 578999999999999999999999986 8999999987531 1 12356777754 3344455443110
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~ 236 (497)
..| ..+..+..+|+++++|||++ ...+..+
T Consensus 183 ---------------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 183 ---------------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ---------------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 001 12223336999999999974 2334445
Q ss_pred HHHHHhCCCEEEEEeCCCCh-HH-----------HhcCCeEEEeeCCeEEEEeCchhH
Q 010936 237 LRCLSRDGRTVIASIHQPSS-EV-----------FELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 237 L~~l~~~g~tvI~~tH~~~~-~i-----------~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
++.+ +.|.++|+++|++.. ++ ..+|||+++|++|+ ..|+++++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 5544 469999999998532 12 26799999999876 55666543
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.57 E-value=1.3e-15 Score=143.72 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT-QTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
+.+|+|++|...+.. .+.+|+++|+|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+++
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 468888887433332 23499999999999999999887765 556777764 89999999995 57888886444455
Q ss_pred CeEEEE
Q 010936 271 GKTVYF 276 (497)
Q Consensus 271 G~iv~~ 276 (497)
+++...
T Consensus 137 ~~~~~~ 142 (185)
T smart00534 137 LHMSAD 142 (185)
T ss_pred EEEEEE
Confidence 554433
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.53 E-value=2.8e-13 Score=140.84 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=66.0
Q ss_pred cCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010936 192 LRGISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~---------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
...+|.||+|++.||+.|+ .+|+|+|||||+++||+..+..+++.|.++ +..+++++|++ ..+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~-~~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDL-EDLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCCh-hhhhhhh
Confidence 3578999999999999886 799999999999999999999999988754 45889999985 3455553
Q ss_pred --CeEEEeeCCeE
Q 010936 263 --DRLYLLSGGKT 273 (497)
Q Consensus 263 --D~v~~L~~G~i 273 (497)
++++.|++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57999999986
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.51 E-value=1.7e-14 Score=139.38 Aligned_cols=88 Identities=31% Similarity=0.417 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 010936 168 TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (497)
Q Consensus 168 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (497)
..+.+.+...++... .+|||||.+++||.-|+ ...++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 345556665555332 59999999999997664 46799999999999999999999999999865
Q ss_pred CCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 244 GRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 244 g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
+.-+|++||++ ..+..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999994 6899999988764
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.48 E-value=2.3e-13 Score=131.34 Aligned_cols=128 Identities=25% Similarity=0.234 Sum_probs=85.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHc--CCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCC-CCCCHHH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI-GTLTVRE 147 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G--~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~-~~lTV~e 147 (497)
+=+|+++.=..+.+++|.||||+|||||||.++. .+.. .|...... .-.++|..|....+ ...++.+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~ 87 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPAD------SATIGLVDKIFTRMSSRESVSS 87 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEcC------CcEEeeeeeeeeeeCCccChhh
Confidence 4455554322237999999999999999999983 3321 45443221 13466776643211 1111111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~IA~aL~~~p~lllLDEPTsgL 225 (497)
++| .-|-||++++++++.+|+++|+|||++|+
T Consensus 88 ----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 88 ----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred ----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 122 34569999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC---CCEEEEEeCCC
Q 010936 226 DSAAAFFV-TQTLRCLSRD---GRTVIASIHQP 254 (497)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~---g~tvI~~tH~~ 254 (497)
|+.....+ ...++.+.+. +.++|++||++
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 99865555 5688888664 35899999995
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.47 E-value=5.5e-14 Score=158.31 Aligned_cols=128 Identities=22% Similarity=0.233 Sum_probs=90.3
Q ss_pred eEEEEeCC-eEEEEECCCCChHHHHHHHHHcC-CCCCCCceeEEEECCEecCCCcCcEEEEcCCCC-CCCCCCHHHHHHH
Q 010936 75 LTGYAEPG-TLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKLSFGTAAYVTQDDN-LIGTLTVRETISY 151 (497)
Q Consensus 75 vs~~i~~G-e~~aIlG~nGaGKSTLL~~L~G~-~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~-l~~~lTV~e~l~~ 151 (497)
+|+.+.+| ++++|.||||+|||||||+|+|. +.+. .| .+||.... .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq---~G----------------~~Vpa~~~~~~~---~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ---SG----------------IPIPANEHSEIP---YFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH---hC----------------CCccCCcccccc---chhhee-
Confidence 78888887 99999999999999999999987 2221 22 13343321 111 111110
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010936 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
. .+... + .+. ...+++|+|+++++.|++.+ .+|+++|+|||++|+|+....
T Consensus 371 -~------~i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 -A------DIGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred -e------ecChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 0 00000 0 011 02346999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHhCCCEEEEEeCCC
Q 010936 232 FV-TQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 232 ~i-~~~L~~l~~~g~tvI~~tH~~ 254 (497)
.+ ..+|..+.+.|.++|++||+.
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~ 445 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChH
Confidence 99 567888877899999999995
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.42 E-value=2.4e-13 Score=116.30 Aligned_cols=72 Identities=18% Similarity=0.045 Sum_probs=59.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-----CCcCcEEEEcCCCCCCCCC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVTQDDNLIGTL 143 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-----~~~~~i~yv~Q~~~l~~~l 143 (497)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.+.. ...+..+|++|+ +++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~- 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI- 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-
Confidence 46899999999999999999999999999999985 588999998742 123446777777 5544
Q ss_pred CHHHHHHHH
Q 010936 144 TVRETISYS 152 (497)
Q Consensus 144 TV~e~l~~~ 152 (497)
|++|||.++
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999884
No 424
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=1e-12 Score=127.43 Aligned_cols=138 Identities=21% Similarity=0.260 Sum_probs=89.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC-CCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~-~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
+.+.+|+++.+.+|++++|.||||+||||+|+++++. +.+ ..|.....- . -.++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a~-~-----~~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPAS-S-----ATLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEcC-c-----eEEeccce---EEEEecCcc
Confidence 5689999999999999999999999999999999983 333 256543321 1 12233222 111111111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS--GGERRRVSIALEILMRPRLLFLDEPTSGL 225 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~IA~aL~~~p~lllLDEPTsgL 225 (497)
++. .++| ..|-+|++-...-+.+|+++|+|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 22334444444455689999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhC-CCEEEEEeCCCChHHHhcC
Q 010936 226 DSAAAFFV-TQTLRCLSRD-GRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 226 D~~~~~~i-~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~ 262 (497)
|+.....+ ...++.+.+. +.++|++||++ ++.++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 98777765 5677777775 89999999995 344444
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.39 E-value=5.2e-13 Score=136.32 Aligned_cols=171 Identities=27% Similarity=0.345 Sum_probs=119.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCC--CceeEEEEC------CEecCCCc-C----------cEEEEcCCCCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNA--FLSGTILLN------GHKTKLSF-G----------TAAYVTQDDNLI 140 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~--~~~G~I~~~------G~~~~~~~-~----------~i~yv~Q~~~l~ 140 (497)
+||++.+++|.||-||||-|++++|.++|+. ...+-.+-+ |-...... + ..-||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 5899999999999999999999999999861 011111100 00000000 0 001222211111
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 010936 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDE 220 (497)
. .+|.+++.- ...+...+++++.+.|.+..++.+. .|||||-||.+||.+-+.+.+++++||
T Consensus 178 k-~~v~~~l~~------------~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 K-GTVGSLLDR------------KDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred H-HHHHHHHHH------------HhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecC
Confidence 1 133333221 1122345677888888888887664 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|.+-||...+..-...|+.+.....=||++.||. +-+.-+.|-+.+|.
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLY 287 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLY 287 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEe
Confidence 9999999999999999999988889999999996 44555678888776
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.37 E-value=7.1e-13 Score=127.60 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=44.3
Q ss_pred CCHH--HHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 010936 195 ISGG--ERRRVSIALEILMRPRLLFLDEPT-----SGLDSAAAFFVTQTLRCLSR 242 (497)
Q Consensus 195 LSgG--erqRv~IA~aL~~~p~lllLDEPT-----sgLD~~~~~~i~~~L~~l~~ 242 (497)
.||+ |++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 4444 999999999999999999999999 99999999999999999865
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.37 E-value=1.3e-12 Score=143.43 Aligned_cols=77 Identities=27% Similarity=0.386 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 193 RGISGGERRRVSIALEILMR----PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~----p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+.+||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++++ +++||++||+| .+...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~--~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLP--QVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 89999999996 355799999999
Q ss_pred eCCe
Q 010936 269 SGGK 272 (497)
Q Consensus 269 ~~G~ 272 (497)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 428
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.35 E-value=2.3e-12 Score=127.02 Aligned_cols=181 Identities=17% Similarity=0.183 Sum_probs=104.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE--CCEe-cC--CC---cCcEEEEcCCCCCCCCCCH---
Q 010936 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL--NGHK-TK--LS---FGTAAYVTQDDNLIGTLTV--- 145 (497)
Q Consensus 77 ~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~--~G~~-~~--~~---~~~i~yv~Q~~~l~~~lTV--- 145 (497)
+.+..|+.++|+||+|+|||||++.|++..... .....+++ -|.+ .. .. ...+-.+.+-+. .+...+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 468899999999999999999999999877542 01122222 1211 00 00 011222222221 111000
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHH--------HHHHHHHHHHHhCCCEEE
Q 010936 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE--------RRRVSIALEILMRPRLLF 217 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--------rqRv~IA~aL~~~p~lll 217 (497)
+.-+..+..++. .+...- -.++++ -.+....++.++. ....+|||+ +||+++||++..+++|.+
T Consensus 89 ~~~~~~a~~~~~-~G~~vl---l~iDei---~r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 89 EMVLEKAKRLVE-HGKDVV---ILLDSI---TRLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HHHHHHHHHHHH-CCCCEE---EEEECH---HHhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 011111111100 000000 000000 0011223333332 445689999 999999999999999999
Q ss_pred EeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010936 218 LDEPTSGLDSAAAFF-VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 218 LDEPTsgLD~~~~~~-i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
| ||+.+|+.+... ++ +..+...+.|.|+.+|+.. ....+|.|.+|+.|..
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 9 999999655543 54 5555546789999999963 4678999999999987
No 429
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.35 E-value=2.6e-11 Score=128.31 Aligned_cols=174 Identities=18% Similarity=0.233 Sum_probs=113.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec---C------C----CcCcEEEEc
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT---K------L----SFGTAAYVT 134 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~---~------~----~~~~i~yv~ 134 (497)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. . . ..+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 35689999 999999999999999999999999999998885 89999976532 1 0 124577887
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCC-HHHHHH-HHHHHHHHhC
Q 010936 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS-GGERRR-VSIALEILMR 212 (497)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-gGerqR-v~IA~aL~~~ 212 (497)
+.+. ++.+-+.-+. .--.+.|.+..-|- |..+- ...++ --|-+| ++++ +.+
T Consensus 221 ~~~~-----~~~~r~~~~~------------~a~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~rEisl~---~ge 273 (438)
T PRK07721 221 TSDQ-----PALMRIKGAY------------TATAIAEYFRDQGL----NVMLM---MDSVTRVAMAQREIGLA---VGE 273 (438)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----cEEEE---EeChHHHHHHHHHHHHh---cCC
Confidence 6432 1111111000 00112233332232 11110 01121 011111 1111 122
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 213 PRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 213 p~lllLDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+ .|+|+|+.....+.++++++.. +|. ||++.+||.. ..+||++..|.+|+++..++..+
T Consensus 274 ~P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 274 PP------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CC------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 22 3789999999999999999974 575 9999999964 37899999999999999987654
No 430
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=3.5e-12 Score=149.40 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=74.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHh
Q 010936 191 HLRGISGGERRRVSIALEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE 260 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~----------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~ 260 (497)
.+++|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+.+...|++|+|+||++ .....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHh
Confidence 467899999999999999986 7999999999999999999999999999987899999999996 67889
Q ss_pred cCCeEEEeeCC
Q 010936 261 LFDRLYLLSGG 271 (497)
Q Consensus 261 ~~D~v~~L~~G 271 (497)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.33 E-value=3.8e-12 Score=139.07 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 193 RGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+.+||||+|||+||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+||++||+| .+..+||+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 3579999999999999997 5899999999999999999999999999965 69999999997 366899999999
Q ss_pred eCC
Q 010936 269 SGG 271 (497)
Q Consensus 269 ~~G 271 (497)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 865
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.33 E-value=1.2e-12 Score=147.90 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=64.1
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ-TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
.+++|+||+|++.|++++ .+|+++|+|||++|+|+.....+.. ++..+.+.|.++|++||++ ......+|+..++ +
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~ 464 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-N 464 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-E
Confidence 346999999999999988 8999999999999999999998865 5777777789999999994 3334445554443 4
Q ss_pred CeEEE
Q 010936 271 GKTVY 275 (497)
Q Consensus 271 G~iv~ 275 (497)
+.+.+
T Consensus 465 ~~~~~ 469 (782)
T PRK00409 465 ASVEF 469 (782)
T ss_pred EEEEE
Confidence 55554
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.31 E-value=1.9e-11 Score=119.44 Aligned_cols=150 Identities=18% Similarity=0.181 Sum_probs=93.0
Q ss_pred EEeCCeEEEEECCCCChHHHH-HHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010936 78 YAEPGTLTALMGPSGSGKSTL-LDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 78 ~i~~Ge~~aIlG~nGaGKSTL-L~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
-+++|++++|.|+|||||||| ++++++..+++ ..+.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g------------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG------------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC------------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 378999999999999999999 78888765432 123455532 25555555543322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----CHH
Q 010936 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGL----DSA 228 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~p~lllLDEPTsgL----D~~ 228 (497)
. . +++.... +. ...-.+ . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 76 ~----~-------~~~~~~~-~~--l~~~~~---~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y----D-------INKKLIS-GK--LLYIPV---Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C----c-------hHHHhhc-Cc--EEEEEe---c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 1 1111111 10 000000 1 136777665555444333 369999999999999 888
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCCh------HHHhcCCeEEEee
Q 010936 229 AAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLS 269 (497)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~tH~~~~------~i~~~~D~v~~L~ 269 (497)
....+.+.++.+++.|.|+++++|.... .+..++|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998878887776654210 1234567777765
No 434
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.31 E-value=2.9e-12 Score=140.64 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=69.7
Q ss_pred ccCCCCHHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHH
Q 010936 191 HLRGISGGERRRVSIALEIL----------MRPRLLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~----------~~p~lllLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~ 259 (497)
.+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++ ...
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 34689999999999999987 599999999998 789999999999999998 589999999995 356
Q ss_pred hcCCeEEEeeC-CeE
Q 010936 260 ELFDRLYLLSG-GKT 273 (497)
Q Consensus 260 ~~~D~v~~L~~-G~i 273 (497)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999985 544
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.28 E-value=4.1e-11 Score=130.94 Aligned_cols=137 Identities=24% Similarity=0.377 Sum_probs=104.7
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH------HHHHcCCCcc-ccccccCcccCCCCHHHHHHHHHHHHHHhC
Q 010936 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVER------TIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMR 212 (497)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 212 (497)
+..|++.+.+.|...+.+... ........+.+ .|..+||.-. .++. ..+|||||.||+-||..+-.+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~-----a~TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRS-----AGTLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccccccc-----CCCcChhHHHHHHHHHHhccc
Confidence 356788888888876653221 11111111222 3445677543 3433 347999999999999999765
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHHH
Q 010936 213 P--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAFE 284 (497)
Q Consensus 213 p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 284 (497)
= =+++||||+.||-+..-..+++.|++|++.|-|+|++.||+ +....+|+|+-| ..|+|++.|++++++.
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 3 46899999999999999999999999999999999999994 678899999998 5789999999999874
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.27 E-value=4.5e-11 Score=111.99 Aligned_cols=145 Identities=26% Similarity=0.247 Sum_probs=96.5
Q ss_pred EEEEECCCCChHHHHHHHHHc-CCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP 162 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G-~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~ 162 (497)
++.|.||+|+|||||.--++- ... +| ..+.|+.=+ .|..+.+.....+. +.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~-----------~g-------~~v~~~s~e------~~~~~~~~~~~~~g----~~ 52 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA-----------RG-------EPGLYVTLE------ESPEELIENAESLG----WD 52 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-----------CC-------CcEEEEECC------CCHHHHHHHHHHcC----CC
Confidence 367999999999998865541 111 11 234455422 25555554443321 11
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHH
Q 010936 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLD---SAAAFFV 233 (497)
Q Consensus 163 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq------Rv~IA~aL~~~p~lllLDEPTsgLD---~~~~~~i 233 (497)
. ++ +...|+....+. .+..+|+|++| +.........+|+++++|||++.+| ......+
T Consensus 53 ~-------~~-l~~~g~l~~~d~-----~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i 119 (187)
T cd01124 53 L-------ER-LEDEGLLAIVDA-----DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI 119 (187)
T ss_pred h-------HH-HHhcCCeEEEec-----CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH
Confidence 1 11 222343333332 44578999998 4555555677999999999999999 8888888
Q ss_pred HHHHHHHHhCCCEEEEEeCCCCh--------HHHhcCCeEEEee
Q 010936 234 TQTLRCLSRDGRTVIASIHQPSS--------EVFELFDRLYLLS 269 (497)
Q Consensus 234 ~~~L~~l~~~g~tvI~~tH~~~~--------~i~~~~D~v~~L~ 269 (497)
.+.++.+++.|.|+|+++|+... .+..+||.|+.|+
T Consensus 120 ~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 120 RRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 99999998889999999998542 2678899999886
No 437
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.26 E-value=3.3e-11 Score=116.64 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=87.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+.+-+|+++..++|++++|.||||+||||+++++++..--. ..| .........+++ -+.++..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G------~~vpa~~~~i~~---~~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMG------MDVPAKSMRLSL---VDRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcC------CccCccccEecc---ccEEEEecCccc
Confidence 356889999999999999999999999999999998653110 011 111000011111 122222222222
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
++..+. +.+ ..|-++++-....+.+|+++|+|||.+|+|+
T Consensus 85 ~~~~~~---------------------------------------StF-~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 85 DIMKGE---------------------------------------STF-MVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccCc---------------------------------------chH-HHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 221110 001 1234444444445578999999999999999
Q ss_pred HHHHHHHHH-HHHHHhC-CCEEEEEeCCC
Q 010936 228 AAAFFVTQT-LRCLSRD-GRTVIASIHQP 254 (497)
Q Consensus 228 ~~~~~i~~~-L~~l~~~-g~tvI~~tH~~ 254 (497)
.....+... ++.+.+. +.++|++||+.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 999998887 7777775 89999999995
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.26 E-value=1.8e-11 Score=117.44 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=53.7
Q ss_pred cCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 192 LRGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 192 ~~~LSgGerqRv~IA~aL~~~p---~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
...+|.|++|.+.|+..|...+ .++++|||-++|+|..+..+++.|+.+.+.+.-||++||.|
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 3457999999999999988776 89999999999999999999999988876678999999996
No 439
>PRK13695 putative NTPase; Provisional
Probab=99.21 E-value=7.7e-12 Score=116.67 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEP--TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEP--TsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
..+||+++-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|.++|+++|+. .+...+|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 45999999999999999999999999995 44444 345666666666789999999983 46678999999999
Q ss_pred CeEEEE
Q 010936 271 GKTVYF 276 (497)
Q Consensus 271 G~iv~~ 276 (497)
|+++..
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998665
No 440
>PRK03918 chromosome segregation protein; Provisional
Probab=99.18 E-value=5.8e-11 Score=137.13 Aligned_cols=77 Identities=31% Similarity=0.327 Sum_probs=68.5
Q ss_pred ccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCe
Q 010936 191 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (497)
Q Consensus 191 ~~~~LSgGerq------Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~ 264 (497)
.+..|||||++ |++||++++.+|+++||||||+|||+..+..+.+.|..+...+.+||++||++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 45689999999 55566678899999999999999999999999999999877788999999995 46789999
Q ss_pred EEEee
Q 010936 265 LYLLS 269 (497)
Q Consensus 265 v~~L~ 269 (497)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99997
No 441
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.15 E-value=1.2e-10 Score=136.25 Aligned_cols=79 Identities=29% Similarity=0.288 Sum_probs=69.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010936 191 HLRGISGGERRRVSIALEILM--------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~--------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
.+.+|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||+++||.. .....+-
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhcc
Confidence 567899999999999999996 8999999999999999999999999999988899999999984 4455566
Q ss_pred CeEEEeeC
Q 010936 263 DRLYLLSG 270 (497)
Q Consensus 263 D~v~~L~~ 270 (497)
.+|.|-+.
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67777654
No 442
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.14 E-value=2e-10 Score=120.89 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=117.6
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEE
Q 010936 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~ 131 (497)
++-++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGer--------- 193 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGER--------- 193 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCC---------
Confidence 55556665553 235688885 999999999999999999999999999998775 6766655542
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHH-
Q 010936 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL- 210 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~- 210 (497)
..+|.|.+..... .-|+... ..+ ....+-|.|+|+|+..+.+.+
T Consensus 194 ----------g~ev~e~~~~~l~---------------------~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iA 238 (432)
T PRK06793 194 ----------GREVKDFIRKELG---------------------EEGMRKS--VVV--VATSDESHLMQLRAAKLATSIA 238 (432)
T ss_pred ----------cccHHHHHHHHhh---------------------hccccee--EEE--EECCCCCHHHHHHHHHHHHHHH
Confidence 1366666543211 1122110 011 133568999999999998888
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010936 211 ------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 211 ------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
.++-++++|+||...|+. .++...+.+.-..|.+..+.+|. ..+.+-+ -...+|.+...+..
T Consensus 239 Eyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L~ERa---g~~~~GSiT~~~tv 306 (432)
T PRK06793 239 EYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM--KKLLERS---GKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhHHHHh---ccCCCcceEEEEEE
Confidence 789999999999999996 56666666665458888888885 2344444 44578887665543
No 443
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=1.9e-10 Score=137.64 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=65.2
Q ss_pred cccccCcccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeC
Q 010936 184 DTVIGNWHLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIH 252 (497)
Q Consensus 184 ~~~vg~~~~~~LSgGerq------Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvI~~tH 252 (497)
|+.++ ....||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 55554 33579999999 99999999999999999999999999999999999988732 3789999999
Q ss_pred CCChHHHhcC
Q 010936 253 QPSSEVFELF 262 (497)
Q Consensus 253 ~~~~~i~~~~ 262 (497)
++ ..+..+|
T Consensus 1269 d~-~~~~~~~ 1277 (1311)
T TIGR00606 1269 DE-DFVELLG 1277 (1311)
T ss_pred CH-HHHHHHh
Confidence 95 5677665
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.12 E-value=1.9e-10 Score=117.27 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=95.0
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-CCC-cCcEEEEcCCCCCCCCCCHHHHHHHH
Q 010936 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KLS-FGTAAYVTQDDNLIGTLTVRETISYS 152 (497)
Q Consensus 75 vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~-~~~-~~~i~yv~Q~~~l~~~lTV~e~l~~~ 152 (497)
+++.++.|+.++|.||+|||||||+++|++.+++. .|.+.+..... ... ...+.++.+... .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~--~----------- 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGG--Q----------- 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCC--C-----------
Confidence 55778899999999999999999999999998775 67677653211 110 011121111000 0
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 010936 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~ 232 (497)
+ ...++- .-.++.+|-.+|+++++|||.+ .+
T Consensus 201 -------------------------~-------------~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 201 -------------------------G-------------LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -------------------------C-------------cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 000111 1134456778999999999996 34
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010936 233 VTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 233 i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+++.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+..
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56677766543446799999964 66779999999999988888877654
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.10 E-value=1.5e-09 Score=124.08 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=60.7
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHH---------hcCCeEEEeeCCeEEEEeCc
Q 010936 210 LMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF---------ELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 210 ~~~p~lllLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~---------~~~D~v~~L~~G~iv~~G~~ 279 (497)
..+|.++++|||+.+| |+..+..+.+.++.+++.|.++|++||++. ++. +.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999888999999999974 443 68999999999998766643
No 446
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.08 E-value=8.3e-10 Score=99.93 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh
Q 010936 195 ISGGERRRVSIALEILMRPRLLFLDEPTS----------GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256 (497)
Q Consensus 195 LSgGerqRv~IA~aL~~~p~lllLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~ 256 (497)
.+.++.++...+++...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45666677888899999999999999994 455555666666666665569999999998643
No 447
>PRK01156 chromosome segregation protein; Provisional
Probab=99.08 E-value=3.7e-10 Score=130.80 Aligned_cols=77 Identities=26% Similarity=0.336 Sum_probs=66.9
Q ss_pred ccCCCCHHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEeCCCChHHHhc
Q 010936 191 HLRGISGGERRRVSI------ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RD-G-RTVIASIHQPSSEVFEL 261 (497)
Q Consensus 191 ~~~~LSgGerqRv~I------A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~tvI~~tH~~~~~i~~~ 261 (497)
.+..|||||++|++| |++++.+|++++|||||+|||+.....+.++|+... .. | .+||++||++ .....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHh
Confidence 467899999999975 589999999999999999999999999999998644 33 3 4899999995 35689
Q ss_pred CCeEEEee
Q 010936 262 FDRLYLLS 269 (497)
Q Consensus 262 ~D~v~~L~ 269 (497)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.05 E-value=2.6e-09 Score=99.00 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCC
Q 010936 193 RGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGG 271 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G 271 (497)
...|-||-=---+.+. .++.-++|||||-++|.|.-+.+++..|+++++.|.-+||.||.|. +..+ --.|+-++.+
T Consensus 128 h~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi--LlAiP~A~I~~~~~~ 204 (233)
T COG3910 128 HHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI--LLAIPGAEIYEISES 204 (233)
T ss_pred hhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh--heeCCCcEEEEEecC
Confidence 4568888654334333 4577899999999999999999999999999999999999999974 3332 2345555544
No 449
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.99 E-value=5.1e-10 Score=132.43 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=67.1
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
.+..|||||++|++||++++ .+|+++||||||++||+.+...+.++|+.+++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 56789999999999999984 67799999999999999999999999999865 478999999964 457899998
Q ss_pred Eee
Q 010936 267 LLS 269 (497)
Q Consensus 267 ~L~ 269 (497)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 764
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.99 E-value=1.6e-08 Score=98.83 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=98.7
Q ss_pred ceeece-EEEEeCCeEEEEECCCCChHHHHHHHHH-cCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHH
Q 010936 70 NVLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS-SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 70 ~iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~L~-G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.-|+.+ .+=+++|.++.|.|++|+|||||...++ +.... | ..+.|+..+. +..+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-----------g-------~~~~y~~~e~------~~~~ 67 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-----------G-------KKVYVITTEN------TSKS 67 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-----------C-------CEEEEEEcCC------CHHH
Confidence 345554 5669999999999999999999998875 11111 1 2355665532 3333
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCC-
Q 010936 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM--RPRLLFLDEPTSG- 224 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~--~p~lllLDEPTsg- 224 (497)
.+.-...+- +.. .+.+. .|.-...+..+. .....|.++.+.+..+..++. +|+++++||||+.
T Consensus 68 ~~~~~~~~g----~~~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 68 YLKQMESVK----IDI-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHCC----CCh-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 333222211 110 11110 011111111111 112357788999999999997 9999999999964
Q ss_pred --CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh------HHHhcCCeEEEee
Q 010936 225 --LDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS------EVFELFDRLYLLS 269 (497)
Q Consensus 225 --LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~------~i~~~~D~v~~L~ 269 (497)
+|......+++.++.+++.|.|+++++|+... .+..++|-++.|+
T Consensus 134 ~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 134 TYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 45555556666677767778999999998532 1456677777776
No 451
>PRK02224 chromosome segregation protein; Provisional
Probab=98.91 E-value=3.1e-09 Score=122.95 Aligned_cols=77 Identities=30% Similarity=0.363 Sum_probs=66.7
Q ss_pred cCCCCHHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEeCCCChHH
Q 010936 192 LRGISGGERR------RVSIALEILMR-----P-RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR-TVIASIHQPSSEV 258 (497)
Q Consensus 192 ~~~LSgGerq------Rv~IA~aL~~~-----p-~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvI~~tH~~~~~i 258 (497)
+..||||||+ |++||++++.+ | +++||||||++||+.....+.++|..+...|. +||++||++ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence 5689999999 89999998864 3 67999999999999999999999999976664 899999996 34
Q ss_pred HhcCCeEEEeeC
Q 010936 259 FELFDRLYLLSG 270 (497)
Q Consensus 259 ~~~~D~v~~L~~ 270 (497)
...||+++.|..
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999964
No 452
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.90 E-value=2.8e-09 Score=126.33 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=68.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010936 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
.+..||||||++++||++|+. +|+++|||||+++||+.....+.++|+++++ +..+|++||++ ....+||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeE
Confidence 456899999999999999985 6799999999999999999999999999865 47899999995 4678999999
Q ss_pred Eee
Q 010936 267 LLS 269 (497)
Q Consensus 267 ~L~ 269 (497)
.+.
T Consensus 1148 ~~~ 1150 (1164)
T TIGR02169 1148 GVT 1150 (1164)
T ss_pred eEE
Confidence 875
No 453
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.89 E-value=1.1e-08 Score=100.31 Aligned_cols=135 Identities=30% Similarity=0.457 Sum_probs=84.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC-EecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG-HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G-~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
|.+..|+||+|+|||||+-.++=-.. +|.=.+.+ ... .....+.|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 67889999999999999887762221 22211111 111 1123455554322
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHH----------------HHHhCCCEEEEeCCCC-
Q 010936 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL----------------EILMRPRLLFLDEPTS- 223 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~----------------aL~~~p~lllLDEPTs- 223 (497)
+..+..+++..+...+++.+..+..+ ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12233455666666666544333322 2245555554443 335799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCC
Q 010936 224 -----GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 254 (497)
Q Consensus 224 -----gLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~ 254 (497)
.+|+.....+++.|++++++ |.+||+++|..
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 47999999999999999874 99999999985
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.89 E-value=8.4e-09 Score=98.44 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
+|+++|..+|+++++|||. |..+...++ +.+..|..++.++|.++ .....||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 655433333 34567999999999964 457789987764
No 455
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.89 E-value=6.4e-09 Score=111.09 Aligned_cols=151 Identities=22% Similarity=0.292 Sum_probs=95.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHH
Q 010936 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
.++++.+..+..|++++++||||+||||++..|++.+... .|. ++++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777788899999999999999999999999876432 231 2578888875 457899999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHH-HHHHHHHHHhCC-----CEEEEeCCCC
Q 010936 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR-RVSIALEILMRP-----RLLFLDEPTS 223 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~IA~aL~~~p-----~lllLDEPTs 223 (497)
.+.+.... ++........+..+...++.+.....|. +.+.+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 99877542 1111111223344455667665444443 32222322 234445555555 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Q 010936 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIH 252 (497)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~g~tvI~~tH 252 (497)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 8 3345555555555665555555
No 456
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.85 E-value=1.9e-09 Score=113.68 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=44.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee-EEEECCEec
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKT 123 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G-~I~~~G~~~ 123 (497)
..+|++||+++++||+++|+|||||||||||+ +|+..|. +| +|.++|.+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEEC
Confidence 46899999999999999999999999999999 6777774 56 899999875
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.74 E-value=3.3e-07 Score=79.56 Aligned_cols=118 Identities=32% Similarity=0.431 Sum_probs=76.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
++..+.|.||+|+||||+++.|+..+.... .+-+.++...... .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------EVLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------cCHHHHH------------
Confidence 367899999999999999999998876530 1344444322110 0000000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 010936 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ----- 235 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~----- 235 (497)
..... .......+++..+..++++--.+|.++++||+..-.+.........
T Consensus 51 -------------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 -------------LIIVG-----------GKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred -------------hhhhh-----------ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 00000 0112467888888888888888899999999999999988887765
Q ss_pred -HHHHHHhCCCEEEEEeC
Q 010936 236 -TLRCLSRDGRTVIASIH 252 (497)
Q Consensus 236 -~L~~l~~~g~tvI~~tH 252 (497)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22223335788999998
No 458
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.66 E-value=2.4e-08 Score=105.45 Aligned_cols=173 Identities=20% Similarity=0.242 Sum_probs=107.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC-----------CCcCcEEEEcCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----------LSFGTAAYVTQD 136 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-----------~~~~~i~yv~Q~ 136 (497)
...+|+++ +++.+|+.++|+|+||+|||||+++|+|..+++...-|.|-.+|.+.. ..+..++|++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 999999999999999999999999999998775222355555554321 112358999999
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHH-HHHHHHHHhCCCE
Q 010936 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEILMRPRL 215 (497)
Q Consensus 137 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-v~IA~aL~~~p~l 215 (497)
...+..+++.+++.+.+......+. ++|- ..|..- .--+-+| +++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~----------~Vll------~~Dslt--------r~a~A~REisl---------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGH----------DVLL------LVDSLT--------RYAMAQREIAL---------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccC----------CEEE------eecchh--------HHHhhhhHHHH----------
Confidence 9999999999999887664311110 0000 001000 0001111 111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHh-C--C-CEEEEEeCCCChHHH-hcCCeEEEeeCCeEEEE
Q 010936 216 LFLDEP--TSGLDSAAAFFVTQTLRCLSR-D--G-RTVIASIHQPSSEVF-ELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 216 llLDEP--TsgLD~~~~~~i~~~L~~l~~-~--g-~tvI~~tH~~~~~i~-~~~D~v~~L~~G~iv~~ 276 (497)
.+-|| +.|-.+.--..+-+++.+... + | .|.+.+..-+.+++. -++|.+.-+-+|+++..
T Consensus 267 -~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 -SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred -hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12343 336777766777777776532 2 2 466666554333222 25777777889999874
No 459
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.65 E-value=1.2e-08 Score=110.16 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=96.9
Q ss_pred ceeece-EEEEeCCeEEEEECCCCChHHHHHHHH--HcCCCCCCCceeEEEECCEecC----CCcCcEEEEcCCCCCCCC
Q 010936 70 NVLEGL-TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNAFLSGTILLNGHKTK----LSFGTAAYVTQDDNLIGT 142 (497)
Q Consensus 70 ~iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~L--~G~~~~~~~~~G~I~~~G~~~~----~~~~~i~yv~Q~~~l~~~ 142 (497)
.-|+.+ .+=+.+|.++.|.|++|||||||..-. .|....+ +.-+++...... ...+..||-.++..--..
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~ 84 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGK 84 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCc
Confidence 346664 567899999999999999999998866 3544322 333444332210 001122322221000000
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHH--HHHHhCCCEEEEeC
Q 010936 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDE 220 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA--~aL~~~p~lllLDE 220 (497)
+.+ .. .... .....+++.+++.+..+... ..+|+|++|||.|+ .+|...|+..
T Consensus 85 ------l~~---~~----~~~~---~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~---- 139 (484)
T TIGR02655 85 ------LFI---LD----ASPD---PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV---- 139 (484)
T ss_pred ------eEE---Ee----cCch---hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch----
Confidence 000 00 0000 00111233344444444433 46999999999999 6666665443
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChH-------H-HhcCCeEEEee
Q 010936 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-------V-FELFDRLYLLS 269 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~-------i-~~~~D~v~~L~ 269 (497)
...+..++++++.+++.|.|+|+++|++... + ..+||.|+.|+
T Consensus 140 ------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5677889999999988899999999985310 2 55899999987
No 460
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=5e-08 Score=101.68 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 193 RGISGGERRRVSIALEILM---------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 193 ~~LSgGerqRv~IA~aL~~---------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
..+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|... |.+|++++|++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~ 341 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISL 341 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecCh
Confidence 3589999999999999999 99999999999999999999999999754 67999999985
No 461
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.63 E-value=1e-07 Score=110.53 Aligned_cols=78 Identities=36% Similarity=0.420 Sum_probs=70.0
Q ss_pred ccCCCCHHHHHHHHHHHHHH------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010936 191 HLRGISGGERRRVSIALEIL------MR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 191 ~~~~LSgGerqRv~IA~aL~------~~--p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.+...+++.|..+...+.+|+||||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988887775 35 599999999999999999999999999988899999999994 688999
Q ss_pred CeEEEeeC
Q 010936 263 DRLYLLSG 270 (497)
Q Consensus 263 D~v~~L~~ 270 (497)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999874
No 462
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.61 E-value=1.1e-06 Score=100.99 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=54.6
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHh--cCCeEEEeeCCeEE
Q 010936 205 IALEILMRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFE--LFDRLYLLSGGKTV 274 (497)
Q Consensus 205 IA~aL~~~p~lllLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~--~~D~v~~L~~G~iv 274 (497)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++. ++.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 677788999999999999999 799999999999999888999999999974 4544 23444333444443
No 463
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.58 E-value=5.6e-08 Score=92.43 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=64.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc-CCCCCC
Q 010936 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLR-LPDKMP 162 (497)
Q Consensus 84 ~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~-~~~~~~ 162 (497)
+++|.||||||||||.++|++.+. .|.+ .++++++.. ..++..+......... .+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-----~~~~--------------~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-----NPKV--------------VIISQDSYY-KDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-----CCCe--------------EEEEecccc-cccccccHHHhccCCCCCCCccc
Confidence 589999999999999999998862 2222 233333322 1222222222111111 111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010936 163 WSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 163 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
.....+.+..+...+..+.+ ....|.|++++..+ .+.+|+++|+|.|..+.++
T Consensus 61 ----~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 ----FDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ----HHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 12334555555544333332 34578888776555 5788999999999999886
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.58 E-value=1.4e-07 Score=89.07 Aligned_cols=81 Identities=23% Similarity=0.234 Sum_probs=59.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec-CC-CcCcEEEEcCCC--CCCCCCCHH
Q 010936 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL-SFGTAAYVTQDD--NLIGTLTVR 146 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~-~~-~~~~i~yv~Q~~--~l~~~lTV~ 146 (497)
..+=+.+.+++|+.++|+||||||||||+++|+|++++. .|.|.+.+... .. ....++++.|.+ ...+..++.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344455678899999999999999999999999999875 79999987542 11 123456655543 345667888
Q ss_pred HHHHHHhh
Q 010936 147 ETISYSAR 154 (497)
Q Consensus 147 e~l~~~~~ 154 (497)
+.+..+.+
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 87776654
No 465
>PRK14079 recF recombination protein F; Provisional
Probab=98.58 E-value=1.2e-07 Score=98.41 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCe
Q 010936 194 GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~---------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~ 264 (497)
-+|+||+|++.||..|+ .+|++++||||+++||+..+..+.+.|... ..++|.+++. ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~-----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEA-----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCC-----CCCCce
Confidence 57999999999999999 899999999999999999999999888653 2355555543 357999
Q ss_pred EEEeeCCeEE
Q 010936 265 LYLLSGGKTV 274 (497)
Q Consensus 265 v~~L~~G~iv 274 (497)
++.+.+|++.
T Consensus 335 ~~~~~~~~~~ 344 (349)
T PRK14079 335 TLRIEAGVFT 344 (349)
T ss_pred EEEEeccEec
Confidence 9999998764
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.56 E-value=2.5e-07 Score=95.77 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010936 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
+++++|-.+|+++++||+. |+.+....++ .+..|.+|+.++|-.+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8887765444 3457999999999853 45667777655
No 467
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.55 E-value=6.6e-08 Score=94.00 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.4
Q ss_pred eeece-EEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010936 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 71 iL~~v-s~~i~~Ge~~aIlG~nGaGKSTLL~~L~ 103 (497)
-|+.+ .+=+++|++++|.|++|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 45553 4679999999999999999999988654
No 468
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=2.4e-07 Score=98.06 Aligned_cols=84 Identities=24% Similarity=0.229 Sum_probs=66.9
Q ss_pred CceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE---ec
Q 010936 47 DVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KT 123 (497)
Q Consensus 47 ~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~ 123 (497)
.++..++.++++..+. ....+++.++ .+.+|+.++|+||||+||||||++|+++.+++ .|.|.+.|+ +.
T Consensus 135 ~~p~~~~r~~v~~~l~----TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev 206 (450)
T PRK06002 135 TAPPAMTRARVETGLR----TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREV 206 (450)
T ss_pred CCCCCeEeecceEEcC----CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccH
Confidence 3445688899998885 2367899886 99999999999999999999999999998875 799988653 32
Q ss_pred C---------CCcCcEEEEcCCCC
Q 010936 124 K---------LSFGTAAYVTQDDN 138 (497)
Q Consensus 124 ~---------~~~~~i~yv~Q~~~ 138 (497)
. .+.+.+++|+|.+.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 1 12356899999764
No 469
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.50 E-value=2.3e-07 Score=106.51 Aligned_cols=138 Identities=22% Similarity=0.224 Sum_probs=87.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
..+-+|+++. ..+.++.|.|||++||||+|+.++-..--. ..| +|||-...- +++.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA--q~G----------------~~VPa~~a~---i~~~-- 650 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA--QIG----------------SFVPAESAR---IGIV-- 650 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH--hcC----------------CceeccceE---eccc--
Confidence 3466788887 677899999999999999999986321000 011 234432211 1111
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHh--CCCEEEEeCC---CC
Q 010936 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM--RPRLLFLDEP---TS 223 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~--~p~lllLDEP---Ts 223 (497)
+.++.++|-. |. ...++|-=+.....++..|-. +++++|+||| |+
T Consensus 651 ----------------------d~I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 651 ----------------------DRIFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ----------------------CeeeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 1111112221 11 113577777777777776654 8999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCe
Q 010936 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDR 264 (497)
Q Consensus 224 gLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~ 264 (497)
.+|..+ ..+..++.+.+. |.++|++||. .++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 888444 455566666665 6899999999 367778775
No 470
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.48 E-value=2.6e-06 Score=90.70 Aligned_cols=173 Identities=19% Similarity=0.232 Sum_probs=107.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-------------CcCcEEEEc
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-------------SFGTAAYVT 134 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-------------~~~~i~yv~ 134 (497)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.+...|..... ..+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35789999 999999999999999999999999999998775 6777766653110 012233333
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCH-HHHHHHHHHHHHHhCC
Q 010936 135 QDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEILMRP 213 (497)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~IA~aL~~~p 213 (497)
+.+. ++.+-..-+. .--.+.+.+...|- |..+ ....|+- -|-+| .|+
T Consensus 226 ~~d~-----~p~~r~~~~~------------~a~t~AE~frd~G~----~Vll---~~DslTr~A~A~R-Eis------- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRLKGAY------------VATAIAEYFRDQGK----DVLL---LMDSVTRFAMAQR-EIG------- 273 (440)
T ss_pred CCCC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----CEEE---EEeChHHHHHHHH-HHH-------
Confidence 3221 1211111000 00112222322332 1111 0111221 11122 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCC-------EEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010936 214 RLLFLDEP--TSGLDSAAAFFVTQTLRCLSRDGR-------TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 214 ~lllLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
+.+.|| +.|+|+.....+.+++.+....+. ||++.+||.. .-++|++..+.+|+++......+
T Consensus 274 --l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 --LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred --HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 234565 559999999999999999876666 8888899853 45789999999999999887654
No 471
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.43 E-value=4.1e-07 Score=94.70 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=63.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceee--------
Q 010936 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLE-------- 73 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~-------- 73 (497)
++.++++|+++++..+++-.. .+ ....-.+.|+||++.|+. .+.+|+
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~------~~---------------e~~~~ri~Fe~LTf~YP~----er~~Le~~~~~~~~ 156 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD------DP---------------EKAKNRVLFENLTPLYPN----ERLRLETSTEDLST 156 (415)
T ss_pred eccccHhHHHHHhCCCccCCC------Cc---------------cccCCCeEEEEeeecCCC----ccceeecCccccce
Confidence 456789999999988776321 00 011224999999999952 346786
Q ss_pred ---ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 74 ---GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 74 ---~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
|+++.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 9999999999999999999999999999987654
No 472
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.40 E-value=8e-07 Score=105.71 Aligned_cols=164 Identities=21% Similarity=0.316 Sum_probs=89.5
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHHHHHHHH
Q 010936 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (497)
Q Consensus 73 ~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~ 152 (497)
.=+++..+.+++++|+|++|+|||||++.+.+.+... ..|.+++++........ .+-.++... .+...
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~--~~~~~~~~~-------~~~~~- 265 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSME--IYSSANPDD-------YNMKL- 265 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchh--hcccccccc-------cchhH-
Confidence 3356778889999999999999999999998766542 47888887532111000 010110000 00000
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 010936 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFF 232 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~ 232 (497)
...++.+.+++...++. + ..+ ++.|+| |...+-+++||+- |.. .
T Consensus 266 -----------~l~~~~l~~il~~~~~~------~-----~~~-~~~~~~------L~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 266 -----------HLQRAFLSEILDKKDIK------I-----YHL-GAMEER------LKHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred -----------HHHHHHHHHHhCCCCcc------c-----CCH-HHHHHH------HhCCeEEEEEeCC----CCH---H
Confidence 00112233344333331 1 112 556665 3355667888984 433 3
Q ss_pred HHHHHHHHH---hCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEEeCchhHHHHHHhcCC
Q 010936 233 VTQTLRCLS---RDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291 (497)
Q Consensus 233 i~~~L~~l~---~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~ 291 (497)
.++.|.... ..|.+||+|||+. ..+... +|+++.+.. -+.++..+.|....+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 345554432 3488999999994 333333 677666531 134566777766433
No 473
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.39 E-value=4.3e-07 Score=108.98 Aligned_cols=61 Identities=30% Similarity=0.398 Sum_probs=53.7
Q ss_pred ccCCCCHHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010936 191 HLRGISGGERRRVS----IALE--------ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 191 ~~~~LSgGerqRv~----IA~a--------L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
...+||||||||++ +|++ +..+|++++|||||+|||+.+...++++|.++ |.++|++||..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 35789999999996 5644 55899999999999999999999999999888 78999999873
No 474
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.32 E-value=1.6e-05 Score=91.36 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 208 EILMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 88999999999999888999999999973
No 475
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.25 E-value=3.1e-05 Score=77.18 Aligned_cols=37 Identities=32% Similarity=0.388 Sum_probs=32.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010936 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~ 105 (497)
...|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578898889999999999999999999999887643
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.24 E-value=5.1e-07 Score=84.61 Aligned_cols=64 Identities=23% Similarity=0.308 Sum_probs=43.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCCC----cCcEEEEcCCCCCCCCCCHHHHHHH
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----FGTAAYVTQDDNLIGTLTVRETISY 151 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~e~l~~ 151 (497)
+|++++|+|+||||||||+++|+|++.+ +.++|.+.... ....++.+|+...++..++..++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998765 46677653211 1123555665444444555555444
No 477
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.20 E-value=3.9e-06 Score=89.04 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=70.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE---ecC--------CCcCcEEEE---
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTK--------LSFGTAAYV--- 133 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~~--------~~~~~i~yv--- 133 (497)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+.. ..|.|.+.|+ +.. ......+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 35689998 999999999999999999999999999987432 2477877663 221 011234555
Q ss_pred --cCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 010936 134 --TQDDN--LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180 (497)
Q Consensus 134 --~Q~~~--l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 180 (497)
+|++. +.+.+ +...+.-..+.+........+...++.++++.++|.
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88753 33433 444443333222111112345567788889888884
No 478
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.20 E-value=1.8e-06 Score=66.46 Aligned_cols=37 Identities=49% Similarity=0.737 Sum_probs=30.2
Q ss_pred eeceEEEEeC-CeEEEEECCCCChHHHHHHHHHcCCCC
Q 010936 72 LEGLTGYAEP-GTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 72 L~~vs~~i~~-Ge~~aIlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.++.++++.+ |.++.|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4556777876 569999999999999999999766544
No 479
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.15 E-value=3.7e-06 Score=75.87 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHH-----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010936 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI-----LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 169 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL-----~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
.+.+++...+..- ..+.+ +...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 101 ~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455666555321 11222 2345789988887666553 2345555 99999999999999988764
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=98.14 E-value=4.2e-06 Score=87.06 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=58.1
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEec--CCCcCcEEEEcCCCCCCCCCCHHHHH
Q 010936 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT--KLSFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 72 L~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~--~~~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
++.+.-.+++|++++|+|+||+|||||+++|+|...+. +|+|.+++... ....+.+.+++|...++.+ +...++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 55555667899999999999999999999999998875 89999987532 1223568899998877764 444444
Q ss_pred HH
Q 010936 150 SY 151 (497)
Q Consensus 150 ~~ 151 (497)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 43
No 481
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.12 E-value=2.4e-06 Score=80.61 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC-hHHHhcCCeEEEeeC
Q 010936 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS-SEVFELFDRLYLLSG 270 (497)
Q Consensus 197 gGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~-~~i~~~~D~v~~L~~ 270 (497)
.|+-+|..||..+..+|+.+..+| +.+||.....+.+.+.+...+|.+||+.+|.+. ..+..+||.+++++.
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 478899999999999999988777 889999999999999888666789999999863 136778999988753
No 482
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.12 E-value=5e-06 Score=89.16 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=43.9
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCCEEEEEeCCCCh-------HHHhcCCeEEEeeCCe
Q 010936 211 MRPRLLFLDEPTSGL----D-----SAAAFFVTQTLRCLSR-DGRTVIASIHQPSS-------EVFELFDRLYLLSGGK 272 (497)
Q Consensus 211 ~~p~lllLDEPTsgL----D-----~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~-------~i~~~~D~v~~L~~G~ 272 (497)
.+|+++++|.-++=. + .....+++..|.++++ .|.|+++++|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 2334566667777766 59999999996432 1567899999998654
No 483
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.12 E-value=2.6e-05 Score=68.25 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEeCCC
Q 010936 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-----DGRTVIASIHQP 254 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvI~~tH~~ 254 (497)
+..........++.++++||.-.. ++.....+.+.+..... .+.++|++++..
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 444445566778999999998765 56667778888877643 467889998864
No 484
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.11 E-value=6.1e-06 Score=68.71 Aligned_cols=49 Identities=39% Similarity=0.512 Sum_probs=37.2
Q ss_pred ccCCCCHHHHH-HHHHHHHHH------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010936 191 HLRGISGGERR-RVSIALEIL------M------RPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (497)
Q Consensus 191 ~~~~LSgGerq-Rv~IA~aL~------~------~p~lllLDEPTsgLD~~~~~~i~~~L~~ 239 (497)
...++|||||| .+.+|.+++ . .|.+++||||+++||+.....++++|++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 34579999994 444444332 2 3799999999999999999999999874
No 485
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.11 E-value=8.4e-05 Score=85.49 Aligned_cols=46 Identities=30% Similarity=0.281 Sum_probs=41.8
Q ss_pred HhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010936 210 LMRPRLLFLDEPTSGLD-SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 35899999999999999 78899999999999888999999999963
No 486
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.10 E-value=8.9e-05 Score=77.69 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHh-CCCEEEEEeCCCChH
Q 010936 194 GISGGERRRVSIALEILMRPRLLFLDEPTSGL-----DSAAAFFV----------TQTLRCLSR-DGRTVIASIHQPSSE 257 (497)
Q Consensus 194 ~LSgGerqRv~IA~aL~~~p~lllLDEPTsgL-----D~~~~~~i----------~~~L~~l~~-~g~tvI~~tH~~~~~ 257 (497)
.=||-.-|=..|..||=...++||+||=||+- |...+..+ ++.++.|.+ .|.+.|+++-- +..
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgd 400 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGD 400 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chh
Confidence 46999999999999999999999999999975 44444444 566777755 58887777765 578
Q ss_pred HHhcCCeEEEeeCCeE
Q 010936 258 VFELFDRLYLLSGGKT 273 (497)
Q Consensus 258 i~~~~D~v~~L~~G~i 273 (497)
.+..+|+|++|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8999999999987554
No 487
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.08 E-value=5.4e-05 Score=71.09 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCCHHHHHHHH--HHHHHHh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 010936 169 LVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS--IALEILM-RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243 (497)
Q Consensus 169 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~--IA~aL~~-~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~ 243 (497)
.+.++++..++.- -.+++ +...+|+|+++++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445566555531 12222 33458999999987 5555443 34443 99999999999999999887664
No 488
>PRK08149 ATP synthase SpaL; Validated
Probab=98.06 E-value=5.5e-06 Score=87.56 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=55.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecC---------CCcCcEEEEcCCCC
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---------LSFGTAAYVTQDDN 138 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---------~~~~~i~yv~Q~~~ 138 (497)
...+++++ +.+.+||.++|+|+||+|||||+++|++...++..+-|.|-.+|.+.. ...+++++|+....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 35799999 999999999999999999999999999998776334589999998632 12246777766543
No 489
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.05 E-value=1.3e-05 Score=89.23 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=69.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCC-----CceeEEEECCEecCCCcCcEEEEcCCCCCCCCCCHH--HHHHHHh
Q 010936 81 PGTLTALMGPSGSGKSTLLDALSSRLASNA-----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR--ETISYSA 153 (497)
Q Consensus 81 ~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~-----~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~--e~l~~~~ 153 (497)
..+.++|+||||+|||||+++|.+..++.. ...+-|.+||..... ..+ .+-.++.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg~ 235 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLGS 235 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcCC
Confidence 345799999999999999999998765320 012234555432110 011 1111110
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 010936 154 RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV 233 (497)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i 233 (497)
.. ......+.+.++..|+.+..+..+ ..+||| +||||| +..||+..+..+
T Consensus 236 -------~~-~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 236 -------VH-DPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred -------cc-HHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 11 111223455677788876665544 468888 999999 799999999999
Q ss_pred HHHHHH
Q 010936 234 TQTLRC 239 (497)
Q Consensus 234 ~~~L~~ 239 (497)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 999875
No 490
>PRK13764 ATPase; Provisional
Probab=98.03 E-value=4e-05 Score=84.30 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=49.5
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------------CCChHHHhcCCeEEEeeCCeE
Q 010936 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------------QPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH---------------~~~~~i~~~~D~v~~L~~G~i 273 (497)
|..+|+++++||.-..-| ++++..++..|..++.|.| +. ..+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCEE
Confidence 678999999999985332 4445455556888999999 64 467789999999999999
Q ss_pred --EEEeCch
Q 010936 274 --VYFGETS 280 (497)
Q Consensus 274 --v~~G~~~ 280 (497)
++.+...
T Consensus 393 ~~v~~~~~~ 401 (602)
T PRK13764 393 SKVYDLEFT 401 (602)
T ss_pred EEEEeeeeE
Confidence 7776643
No 491
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.03 E-value=1.9e-05 Score=77.43 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=34.1
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCCEEEEEeCCC
Q 010936 210 LMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSR-DGRTVIASIHQP 254 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD~~~~~~i~~~-L~~l~~-~g~tvI~~tH~~ 254 (497)
+.+..++|+||+..|=++.....+... ++.+.+ .+..+|++||..
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~ 166 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH 166 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc
Confidence 346789999999999999998877654 555776 488999999994
No 492
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.02 E-value=9.4e-05 Score=71.69 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=44.1
Q ss_pred hCCCEEEEeCC-----CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC--------hHHHhcCCeEEEee
Q 010936 211 MRPRLLFLDEP-----TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS--------SEVFELFDRLYLLS 269 (497)
Q Consensus 211 ~~p~lllLDEP-----TsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~--------~~i~~~~D~v~~L~ 269 (497)
.+++++++|=. +.+.|...+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 36889999932 2345566677888899998888999999999621 22567899999985
No 493
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.01 E-value=4.8e-06 Score=79.87 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
++|++++|.||||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999998865
No 494
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.98 E-value=6.3e-06 Score=80.38 Aligned_cols=72 Identities=22% Similarity=0.339 Sum_probs=46.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeE----EEECCEecCC-CcCcEEEEcCCCCCCCCCCHHHHHHHHhh
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGT----ILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~----I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (497)
.+..++||.||||||||||++.|++.+++. +|. |.+++..... .....+++++.+ .+..+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 456799999999999999999999999875 676 5555432111 112345665533 3345566665555443
Q ss_pred c
Q 010936 155 L 155 (497)
Q Consensus 155 ~ 155 (497)
+
T Consensus 107 l 107 (229)
T PRK09270 107 L 107 (229)
T ss_pred H
Confidence 3
No 495
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.97 E-value=7.6e-06 Score=86.59 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=53.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010936 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
.++.++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.+.+.|..
T Consensus 129 ~~~r~~v~~~l~----tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d---~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLM----TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD---SNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeC----CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC---EEEEEEECCC
Confidence 456666666663 346799999 999999999999999999999999999998875 6888777753
No 496
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.96 E-value=1.1e-05 Score=82.53 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=44.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010936 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.+..-|+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEec
Confidence 36699999 999999999999999999999999999998875 677777664
No 497
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.96 E-value=2.2e-05 Score=82.06 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=41.8
Q ss_pred hCCCEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHh-CCCEEEEEeCCCC-------hHHHhcCCeEEEeeCC
Q 010936 211 MRPRLLFLDEPTS----GLD-----SAAAFFVTQTLRCLSR-DGRTVIASIHQPS-------SEVFELFDRLYLLSGG 271 (497)
Q Consensus 211 ~~p~lllLDEPTs----gLD-----~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~-------~~i~~~~D~v~~L~~G 271 (497)
.+|+++++|+-.+ .+| .....++...|.++++ .|.|+|++.|-.. ..+..++|.|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 4899999999643 333 2334455666777766 5899999988522 1357789999988643
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.95 E-value=4.5e-05 Score=79.35 Aligned_cols=28 Identities=43% Similarity=0.590 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~ 107 (497)
++|.+++|.||+||||||+|++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999999999874
No 499
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.93 E-value=4.9e-06 Score=83.93 Aligned_cols=71 Identities=13% Similarity=0.195 Sum_probs=47.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC--CCCCceeEEEECCEec---CC-CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010936 82 GTLTALMGPSGSGKSTLLDALSSRLA--SNAFLSGTILLNGHKT---KL-SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 82 Ge~~aIlG~nGaGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~---~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
-.++||.||||||||||+++|.+++. +. +|.|.+-+.+. .. ..+..++. |+..+++.+++.+.+.+...+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~---~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPE---HRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCC---CCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 36999999999999999999999886 33 57766644431 11 11223433 555666777887777776554
Q ss_pred c
Q 010936 156 R 156 (497)
Q Consensus 156 ~ 156 (497)
+
T Consensus 138 k 138 (290)
T TIGR00554 138 K 138 (290)
T ss_pred H
Confidence 3
No 500
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.93 E-value=6.4e-06 Score=84.33 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=51.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEecCC-----------CcCcEEEEcCCCCCCCCCCHHHH
Q 010936 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 80 ~~Ge~~aIlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----------~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
++|++++++||||+||||++..|++.+.+. .|+|.+.+.+... ....+.+++|.....|..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 578999999999999999999999998763 5789887765311 12347788886555555566666
Q ss_pred HHHH
Q 010936 149 ISYS 152 (497)
Q Consensus 149 l~~~ 152 (497)
+..+
T Consensus 189 l~~~ 192 (318)
T PRK10416 189 IQAA 192 (318)
T ss_pred HHHH
Confidence 6544
Done!