BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010937
         (497 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4II1|A Chain A, Crystal Structure Of The Zinc Finger Of Zgpat
 pdb|4II1|B Chain B, Crystal Structure Of The Zinc Finger Of Zgpat
 pdb|4II1|C Chain C, Crystal Structure Of The Zinc Finger Of Zgpat
 pdb|4II1|D Chain D, Crystal Structure Of The Zinc Finger Of Zgpat
          Length = 167

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 119 WYDGRIIGLEETD----SAKVSFLRPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSF 174
           +++  ++G EE +      +V +L PT +++  C FFL+ +CRF  NCR SHG  V L  
Sbjct: 46  YHNAMVVGTEEAEDGSAGVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSLDE 105

Query: 175 LKKYVPTSWEQSLVGSTIWALSDDKVGIWRKAELGSWDDEH 215
           L+ +          GS   A   D  G+W  A +   D+ +
Sbjct: 106 LRPFQDPDLSSLQAGSACLAKHQD--GLWHAARITDVDNGY 144


>pdb|4E61|A Chain A, Crystal Structure Of The Eb1-Like Motif Of Bim1p
 pdb|4E61|B Chain B, Crystal Structure Of The Eb1-Like Motif Of Bim1p
          Length = 106

 Score = 29.3 bits (64), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 391 INNQLRVHHETINGSSPKMQQHKGSVKEKKISRRDLVAYDDEIKDLRVRVVKLEEMVN 448
           I  +L    ETI   + +++Q+KG+V   +I R     Y ++++D+ + V   ++++N
Sbjct: 9   IQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE---FYFNKLRDIEILVHTTQDLIN 63


>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
           Amyloliquefaciens And B. Licheniformis At 1.92a
 pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
           Amyloliquefaciens And B. Licheniformis At 1.93a
 pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
           Amyloliquefaciens And B. Licheniformis At 2.2a
 pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
           Amyloliquefaciens And B. Licheniformis At 1.7a
          Length = 483

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 57  GLFHLKRARLLREADLVLHGCSSRTEDVQAEPLDPADVEPEPLEDQRYSVGSKCRF---- 112
           G  H +  ++  +  L     +  TEDV A  ++PA+   E  E+ +    +  RF    
Sbjct: 86  GSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRG 145

Query: 113 -RYNDGRWYDGRIIGLEETDSAKVS 136
             Y+D +W+     G +  +S K+S
Sbjct: 146 NTYSDFKWHWYHFDGADWDESRKIS 170


>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
           Amyloliquefaciens Alpha-Amylase
 pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
           Amyloliquefaciens Alpha-Amylase
          Length = 483

 Score = 28.9 bits (63), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 57  GLFHLKRARLLREADLVLHGCSSRTEDVQAEPLDPADVEPEPLEDQRYSVGSKCRF---- 112
           G  H +  ++  +  L     +  TEDV A  ++PA+   E  E+ +    +  RF    
Sbjct: 86  GSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRG 145

Query: 113 -RYNDGRWYDGRIIGLEETDSAKVS 136
             Y+D +W+     G +  +S K+S
Sbjct: 146 NTYSDFKWHWYHFDGADWDESRKIS 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,335,074
Number of Sequences: 62578
Number of extensions: 462970
Number of successful extensions: 1218
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 5
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)