BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010938
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 14/217 (6%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V + ++ +L ++ A+P ++ A GPSG GKST+ L A G I ++G
Sbjct: 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDG 63
Query: 121 HK-TKLSF----GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII 175
+S +V+QD ++ T+RE ++Y D+ W R+ +
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 176 EMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQ 235
E + D +T +G ++ ISGG+R+R++IA L P++L LDE T+ LDS + V +
Sbjct: 123 E-NMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272
L L + GRT + H+ S+ V D++Y + G+
Sbjct: 181 ALDSLMK-GRTTLVIAHRLSTIVDA--DKIYFIEKGQ 214
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 26/225 (11%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG---------- 120
VL+G+ + G + ++GPSGSGKST L L+ F G I+++G
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN---LLEDFDEGEIIIDGINLKAKDTNL 74
Query: 121 HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGL 179
+K + G V Q NL +TV I+ + ++R K P + + ++GL
Sbjct: 75 NKVREEVG---MVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGL 128
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+D A + + +SGG+ +RV+IA + M P+++ DEPTS LD V ++
Sbjct: 129 KDKA-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 240 LSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
L+ +G T++ H+ E+ DR+ + GG + G+ F+
Sbjct: 184 LANEGMTMVVVTHEMGF-AREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 26/226 (11%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG--------- 120
VL+G+ + G + ++GPSGSGKST L L+ F G I+++G
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN---LLEDFDEGEIIIDGINLKAKDTN 94
Query: 121 -HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMG 178
+K + G V Q NL +TV I+ + ++R K P + + ++G
Sbjct: 95 LNKVREEVG---MVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVG 148
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L+D A + + +SGG+ +RV+IA + M P+++ DEPTS LD V ++
Sbjct: 149 LKDKA-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
L+ +G T++ H+ E+ DR+ + GG + G+ F+
Sbjct: 204 QLANEGMTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 24/208 (11%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--------SFGTAAYV 133
G++TAL+GPSGSGKST+L L RL A SGTI L+GH + GT V
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL-RLYDPA--SGTISLDGHDIRQLNPVWLRSKIGT---V 423
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA---DTVIGNW 190
+Q+ L + ++ E I+Y A P + E + + E +++ +TV+G
Sbjct: 424 SQEPILF-SCSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+ +SGG+++R++IA +L P++L LDE TS LD+ + V + L L DGRTV+
Sbjct: 481 GVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVI 538
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGE 278
H+ S+ + + + +L GK +G+
Sbjct: 539 AHRLST--IKNANMVAVLDQGKITEYGK 564
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 112/210 (53%), Gaps = 28/210 (13%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--------SFGTAAYV 133
G++TAL+GPSGSGKST+L L RL A SGTI L+GH + GT V
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL-RLYDPA--SGTISLDGHDIRQLNPVWLRSKIGT---V 454
Query: 134 TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA---DTVIGNW 190
+Q+ L + ++ E I+Y A P + E + + E +++ +TV+G
Sbjct: 455 SQEPILF-SCSIAENIAYGADD--PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE- 510
Query: 191 HLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+G+ SGG+++R++IA +L P++L LDE TS LD+ + V + L L DGRTV+
Sbjct: 511 --KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVL 567
Query: 249 ASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
H S+ + + + +L GK +G+
Sbjct: 568 VIAHHLST--IKNANMVAVLDQGKITEYGK 595
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 22/227 (9%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
+L+ + E G A +G SG GKSTL++ L R SG IL++GH K F T
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLIN-LIPRFYD--VTSGQILIDGHNIK-DFLTG 411
Query: 131 AY-----VTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
+ + Q DN++ + TV+E I +++ + K I M L DT
Sbjct: 412 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLPQGYDT 469
Query: 186 VIGNWHLRGI--SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+G RG+ SGG+++R+SIA L P +L LDE TS LD + + + L LS+D
Sbjct: 470 EVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD 526
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
T+I + H+ S+ D++ ++ G V ET E A+ G
Sbjct: 527 RTTLIVA-HRLSTITHA--DKIVVIENGHIV---ETGTHRELIAKQG 567
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 121/251 (48%), Gaps = 15/251 (5%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGT 129
++G++ + G AL+GPSG GK+T L L+ + S +L+N K +
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YRE 76
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
V Q+ L +TV E I++ R R ++ E VE+ ++E+ + D ++
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRAR---RISKDE----VEKRVVEIARKLLIDNLLDR 129
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVI 248
+ +SGG+++RV++A ++ +P++L DEP S LD+ + ++ L ++ G T +
Sbjct: 130 KPTQ-LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV 188
Query: 249 ASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCIN 308
H +E + R+ + + GK V +G ++ + F + NP +FLR +
Sbjct: 189 YVTHD-QAEAMTMASRIAVFNQGKLVQYGTPDEVYD-SPKNMFVASFIGNPPTNFLRDFS 246
Query: 309 SDFDKVKATLK 319
+ + LK
Sbjct: 247 VSVENKQTILK 257
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 24/226 (10%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127
TH L+G+ + G +TA++G +G GKSTL + L + SG IL + S
Sbjct: 21 TH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSR 76
Query: 128 G-------TAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
+ V QD DN + + +V + +S+ A + K+P E R V+ + G+
Sbjct: 77 KGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA---VNMKLPEDEIRKRVDNALKRTGI 133
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
+ D +S G+++RV+IA ++M P++L LDEPT+GLD + + L
Sbjct: 134 EHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 240 LSRD-GRTVIASIHQPSSEVFELF-DRLYLLSGGKTVYFGETSAAF 283
+ ++ G T+I + H ++ L+ D ++++ G+ + G F
Sbjct: 189 MQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 21/235 (8%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFG--TAAYVTQDDN 138
G AL+GPSGSGKSTLL ++ SG I + T+L V Q+
Sbjct: 29 GEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWA 85
Query: 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN--WHLRGIS 196
L +TV + I++ LR K P E +++ + E+ D ++ W L S
Sbjct: 86 LYPHMTVYKNIAFPLELR---KAPREE----IDKKVREVAKMLHIDKLLNRYPWQL---S 135
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPS 255
GG+++RV+IA ++ P +L LDEP S LD+ V L+ L ++ G T + H
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-Q 194
Query: 256 SEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCINSD 310
+E + DR+ ++ G+ + G + + + F L NP +F+ D
Sbjct: 195 AEALAMADRIAVIREGEILQVGTPDEVY-YKPKYKFVGGFLGNPPMNFVEAKVED 248
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 17/216 (7%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLS--FG 128
L+ L+ E G ++GP+G+GK+ L+ ++ + SG ILL+G T LS
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
A+V Q+ +L + V++ + + R+ K KR L T ++ ++ D
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRM----KKIKDPKRVL--DTARDLKIEHLLDR--- 123
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+ +SGGE++RV++A ++ P++L LDEP S LD + L L + + +
Sbjct: 124 --NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 249 ASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
I +E + DR+ ++ GK + G+ FE
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLS-- 126
+L+ + + G + ++G SGSGKSTL ++L ++ +G +L++GH L+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTL-----TKLIQRFYIPENGQVLIDGHDLALADP 72
Query: 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V DN++ ++ + IS + +K+ ++ K I E L++ +
Sbjct: 73 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYN 130
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + + + + G
Sbjct: 131 TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-G 188
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
RTVI H+ S+ + DR+ ++ GK V G+
Sbjct: 189 RTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 220
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLS-- 126
+L+ + + G + ++G SGSGKSTL ++L ++ +G +L++GH L+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTL-----TKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V DN++ ++ + IS + +K+ ++ K I E L++ +
Sbjct: 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYN 136
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + + + + G
Sbjct: 137 TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-G 194
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
RTVI H+ S+ + DR+ ++ GK V G+
Sbjct: 195 RTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 226
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLS-- 126
+L+ + + G + ++G SGSGKSTL ++L ++ +G +L++GH L+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTL-----TKLIQRFYIPENGQVLIDGHDLALADP 74
Query: 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V DN++ ++ + IS + +K+ ++ K I E L++ +
Sbjct: 75 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYN 132
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + + + + G
Sbjct: 133 TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-G 190
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
RTVI H+ S+ + DR+ ++ GK V G+
Sbjct: 191 RTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 222
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 15/190 (7%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTIL--LNGHKTKL 125
+L+GL+ EPG AL+GPSG GKST LL+ L F+ G+ + LN T+
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR- 1152
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
A V+Q+ L ++ E I Y E L L + +T
Sbjct: 1153 --SQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFET 1209
Query: 186 VIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+G+ RG +SGG+++R++IA ++ P++L LDE TS LD+ + V + L +R+
Sbjct: 1210 RVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD-RARE 1265
Query: 244 GRTVIASIHQ 253
GRT I H+
Sbjct: 1266 GRTCIVIAHR 1275
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 136/301 (45%), Gaps = 31/301 (10%)
Query: 7 SNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNG 66
S+V+M A AG + V G + + + E ++ + D S++ KD+ + ++
Sbjct: 360 SSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVE 419
Query: 67 ETH---------NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
H +L G+ G AL+G SG GKST++ L L L G I
Sbjct: 420 NVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLL---LRYYDVLKGKIT 476
Query: 118 LNG---HKTKLSF--GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER 172
++G L F A V+Q+ L T+ E IS ++M + K E+
Sbjct: 477 IDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEGITREEMVAACKMANAEK 535
Query: 173 TIIEMGLQDCADTVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230
I L + +T++G+ RG +SGG+++R++IA ++ P++L LDE TS LD+ +
Sbjct: 536 FI--KTLPNGYNTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 590
Query: 231 FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
V Q L ++ GRT I H+ S+ D + G+ V G+ A AQ G
Sbjct: 591 GIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRA---LMAQQG 644
Query: 291 F 291
Sbjct: 645 L 645
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 36/253 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNA-FLSGTILLNGHK---------TKLSFGTAA 131
++TA++G S SGKST+++A++ L N LSG +L G K+ + A
Sbjct: 34 NSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIA 93
Query: 132 YVTQ--DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
V Q +L T+ V E + + WS L+E+ ++ + + N
Sbjct: 94 LVPQAAQQSLNPTMKVIEHFKDTVEAH---GVRWSHSE-LIEKASEKLRMVRLNPEAVLN 149
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+ +SGG ++RV IAL +L+ P +L LDEPTS LD + Q L+ L + + +
Sbjct: 150 SYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLI 209
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLR---- 305
+ + EL D++ ++ GG V + T F+ F +NP + R
Sbjct: 210 FVTHDIAVAAELADKVAVIYGGNLVEYNST---FQIF----------KNPLHPYTRGLIN 256
Query: 306 ---CINSDFDKVK 315
+N+D KVK
Sbjct: 257 SIMAVNADMSKVK 269
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 20/227 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTIL--LNGHKTKL 125
VL+GL+ + G AL+G SG GKST LL+ +A + FL G + LN +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISY--SARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
G + + ++ ++ E I+Y ++R+ +++ + K + + I L D
Sbjct: 1108 QLG----IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFI--DSLPDKY 1161
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+T +G+ + +SGG+++R++IA ++ +P +L LDE TS LD+ + V + L +R+
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-ARE 1219
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
GRT I H+ S+ + D + ++ GK G + AQ G
Sbjct: 1220 GRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQ---QLLAQKG 1261
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-----KTK 124
+L+GL + G AL+G SG GKST + L RL L G + ++G +
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQ-LMQRLYDP--LDGMVSIDGQDIRTINVR 460
Query: 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V+Q+ L T T+ E I Y D++ + K I+++ Q D
Sbjct: 461 YLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQ--FD 517
Query: 185 TVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
T++G RG +SGG+++R++IA ++ P++L LDE TS LD+ + V L +R
Sbjct: 518 TLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AR 573
Query: 243 DGRTVIASIHQPSS 256
+GRT I H+ S+
Sbjct: 574 EGRTTIVIAHRLST 587
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 20/227 (8%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTIL--LNGHKTKL 125
VL+GL+ + G AL+G SG GKST LL+ +A + FL G + LN +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 126 SFGTAAYVTQDDNLIGTLTVRETISY--SARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
G + + ++ ++ E I+Y ++R+ +++ + K + + I L D
Sbjct: 1108 QLG----IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFI--DSLPDKY 1161
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+T +G+ + +SGG+++R++IA ++ +P +L LDE TS LD+ + V + L +R+
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-ARE 1219
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
GRT I H+ S+ + D + ++ GK G + AQ G
Sbjct: 1220 GRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQ---QLLAQKG 1261
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH-----KTK 124
+L+GL + G AL+G SG GKST + L RL L G + ++G +
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQ-LMQRLYDP--LDGMVSIDGQDIRTINVR 460
Query: 125 LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V+Q+ L T T+ E I Y D++ + K I+++ Q D
Sbjct: 461 YLREIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQ--FD 517
Query: 185 TVIGNWHLRG--ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
T++G RG +SGG+++R++IA ++ P++L LDE TS LD+ + V L +R
Sbjct: 518 TLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AR 573
Query: 243 DGRTVIASIHQPSS 256
+GRT I H+ S+
Sbjct: 574 EGRTTIVIAHRLST 587
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 93/195 (47%), Gaps = 22/195 (11%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTILLNGHKTKLS 126
VL+GLT PG +TAL+GP+GSGKST LL L L G L+ L
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----- 181
AA V Q+ L G + RE I+Y + P E+ T V +E G D
Sbjct: 93 TQVAA-VGQEPLLFGR-SFRENIAYGL-----TRTPTMEEITAV---AMESGAHDFISGF 142
Query: 182 --CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-R 238
DT +G + +SGG+R+ V++A ++ +PRLL LD+ TS LD+ V + L
Sbjct: 143 PQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYE 201
Query: 239 CLSRDGRTVIASIHQ 253
RTV+ HQ
Sbjct: 202 SPEWASRTVLLITHQ 216
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLS-- 126
+L+ + + G + ++G +GSGKSTL ++L ++ +G +L++GH L+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTL-----TKLIQRFYIPENGQVLIDGHDLALADP 74
Query: 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V DN++ ++ + IS + +K+ ++ K I E L++ +
Sbjct: 75 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYN 132
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + + + + G
Sbjct: 133 TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-G 190
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
RTVI H+ S+ + DR+ ++ GK V G+
Sbjct: 191 RTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 222
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLS-- 126
+L+ + + G + ++G SGSGKSTL ++L ++ +G +L++GH L+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTL-----TKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V DN++ ++ + IS + +K+ ++ K I E L++ +
Sbjct: 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYN 136
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
T++G G+SGG+R+R++IA ++ P++L D+ TS LD + + + + + + G
Sbjct: 137 TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-G 194
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
RTVI H+ S+ + DR+ ++ GK V G+
Sbjct: 195 RTVIIIAHRLST--VKNADRIIVMEKGKIVEQGK 226
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--LSFG 128
VL+ + E G + ++G +GSGK+TLL L+ LA+ +G I L+G L
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA----AGEIFLDGSPADPFLLRK 81
Query: 129 TAAYVTQD--DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
YV Q+ +IG TV E +++S + D+ SE R +++ + +GL A
Sbjct: 82 NVGYVFQNPSSQIIGA-TVEEDVAFSLEIMGLDE---SEMRKRIKKVLELVGLSGLAAAD 137
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246
N +SGG+++R++IA + R L LDEP S LD + + Q L L +G+
Sbjct: 138 PLN-----LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGF 291
+I H+ E + D + +S G + G ++E F + F
Sbjct: 193 IILVTHE--LEYLDDMDFILHISNGTIDFCG----SWEEFVEREF 231
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 86/178 (48%), Gaps = 21/178 (11%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTILLNGHKTKLS 126
VL+GLT PG +TAL+GP+GSGKST LL L L G L+ L
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----- 181
AA V Q+ L G + RE I+Y + P E+ T V +E G D
Sbjct: 93 TQVAA-VGQEPLLFGR-SFRENIAYGL-----TRTPTMEEITAV---AMESGAHDFISGF 142
Query: 182 --CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
DT +G + +SGG+R+ V++A ++ +PRLL LD TS LD+ V + L
Sbjct: 143 PQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 14/214 (6%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS-GTILLNGHKTKLS 126
H L+ + + GT AL+G +GSGKST+ L + + G +N +
Sbjct: 32 NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSI 91
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYS---ARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
V QD T+ ETI Y+ +L D+ ++ IE L
Sbjct: 92 RSIIGIVPQD-----TILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIE-ALPKKW 145
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
DT++GN ++ +SGGER+R++IA +L P+++ DE TS LDS + + + L R
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RK 203
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
RT+I H+ S+ + + LL+ GK V G
Sbjct: 204 NRTLIIIAHRLST--ISSAESIILLNKGKIVEKG 235
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 11/178 (6%)
Query: 82 GTLTALMGPSGSGKSTLLD---ALSSRLASNAFLSG---TILLNGHKTKLSFGTAAYVTQ 135
G ++MGPSGSGKST+L+ L ++ L + TK+ +V Q
Sbjct: 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
NLI LT E + + M E+R +R + + + + + N +
Sbjct: 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERR---KRALECLKMAELEER-FANHKPNQL 146
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIH 252
SGG+++RV+IA + P ++ D+PT LDS + Q L+ L+ DG+TV+ H
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 110/214 (51%), Gaps = 17/214 (7%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLS-- 126
+L+ + + G + ++G SGSGKSTL ++L ++ +G +L++GH L+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTL-----TKLIQRFYIPENGQVLIDGHDLALADP 72
Query: 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V DN++ ++ + IS + +K+ ++ K I E L++ +
Sbjct: 73 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYN 130
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + + + + G
Sbjct: 131 TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-G 188
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
RTVI + S+ + DR+ ++ GK V G+
Sbjct: 189 RTVIIIAARLST--VKNADRIIVMEKGKIVEQGK 220
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 110/214 (51%), Gaps = 17/214 (7%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFL--SGTILLNGHKTKLS-- 126
+L+ + + G + ++G SGSGKSTL ++L ++ +G +L++GH L+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTL-----TKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD 184
V DN++ ++ + IS + +K+ ++ K I E L++ +
Sbjct: 79 NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYN 136
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
T++G G+SGG+R+R++IA ++ P++L DE TS LD + + + + + + G
Sbjct: 137 TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-G 194
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
RTVI + S+ + DR+ ++ GK V G+
Sbjct: 195 RTVIIIAARLST--VKNADRIIVMEKGKIVEQGK 226
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---DALSSRLASNAFLSGTILLNGHKTKL 125
+ +L+G++ + G +++G SGSGKSTLL L + FL G + ++ +L
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 126 SF---GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
S +V Q LI LT E + L P E + E + E+GL D
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGLGDK 133
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242
+ +SGGE++RV+IA + P LLF DEPT LDSA V ++
Sbjct: 134 L-----SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
G +++ H+ E+ EL R + GK V
Sbjct: 189 GGTSIVMVTHE--RELAELTHRTLEMKDGKVV 218
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 11/178 (6%)
Query: 82 GTLTALMGPSGSGKSTLLD---ALSSRLASNAFLSG---TILLNGHKTKLSFGTAAYVTQ 135
G ++MGPSGSGKST+L+ L ++ L + TK+ +V Q
Sbjct: 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
NLI LT E + + M E+R +R + + + + + N +
Sbjct: 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERR---KRALECLKMAELEER-FANHKPNQL 146
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIH 252
SGG+++RV+IA + P ++ D+PT LDS + Q L+ L+ DG+TV+ H
Sbjct: 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 24/221 (10%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLD---ALSSRLASNAFLSGTILLNGHKTKLSFG 128
+ G++ G + L+GPSGSGK+T+L L + ++ G + + K + G
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
V Q+ L +TV + +S+ R + ++P E V + M L+ A
Sbjct: 91 ---LVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYA----- 139
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD----- 243
N +SGG+++RV++A + RP++L DEP + +D+ + + LR R
Sbjct: 140 NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ----IRRELRTFVRQVHDEM 195
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
G T + H E E+ DR+ +L G FG +E
Sbjct: 196 GVTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 95/208 (45%), Gaps = 26/208 (12%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASN---AFLSGTILLNGHKTKLSFGTAAYVTQDDN 138
G + A++GP+G+GKSTLL L+ L+ + L G LN + K T A + Q
Sbjct: 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN-LNSWQPKALARTRAVMRQYSE 95
Query: 139 LIGTLTVRETISYSARLRLPDKMPW--SEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196
L +V E I + P+ S+ R +++ M DC + R +S
Sbjct: 96 LAFPFSVSEVIQMG-------RAPYGGSQDRQALQQV---MAQTDC--LALAQRDYRVLS 143
Query: 197 GGERRRVSIALEILMR-------PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
GGE++RV +A +L + PR LFLDEPTS LD + LR L+R +
Sbjct: 144 GGEQQRVQLA-RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVC 202
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ + DR+ LL+ GK V G
Sbjct: 203 CVLHDLNLAALYADRIMLLAQGKLVACG 230
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 99/214 (46%), Gaps = 28/214 (13%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTILLNGHKTKLSF 127
VL+GLT PG +TAL+GP+GSGKST LL L L G L L
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM---------G 178
AA V Q+ + G +++E I+Y ++K T+ E T + G
Sbjct: 92 QVAA-VGQEPQVFGR-SLQENIAYG----------LTQKPTMEEITAAAVKSGAHSFISG 139
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL- 237
L DT + + +SGG+R+ V++A ++ +P +L LD+ TS LD+ + V Q L
Sbjct: 140 LPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLY 198
Query: 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271
R R+V+ S + E D + L GG
Sbjct: 199 ESPERYSRSVLLITQHLS--LVEQADHILFLEGG 230
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 26/217 (11%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA----FLSGTILLNGHKTK- 124
+L+G++ E G + L+GP+G+GK+T L +S+ + ++ ++ H+ +
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88
Query: 125 ----LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ 180
L AY N+ G +R + A SE +VER GL
Sbjct: 89 LISYLPEEAGAY----RNMQGIEYLRFVAGFYAS-------SSSEIEEMVERATEIAGLG 137
Query: 181 DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240
+ + + S G R++ IA +++ PRL LDEPTSGLD A V + L+
Sbjct: 138 EKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
Query: 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
S++G T++ S H EV L DR+ L+ G V G
Sbjct: 193 SQEGLTILVSSHN-MLEVEFLCDRIALIHNGTIVETG 228
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 13/225 (5%)
Query: 61 VTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
V S + L+ ++ PG AL+GPSG+GKST+L L SG I ++G
Sbjct: 59 VHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL---FRFYDISSGCIRIDG 115
Query: 121 HK----TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIE 176
T+ S + V D ++ T+ + I Y D++ + + + I
Sbjct: 116 QDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAI-- 173
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
M + T +G L+ +SGGE++RV+IA IL P ++ LDE TS LD++ + +
Sbjct: 174 MAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS 232
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281
L + + RT I H+ S+ V D++ ++ G V G A
Sbjct: 233 LAKVCAN-RTTIVVAHRLSTVVNA--DQILVIKDGCIVERGRHEA 274
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 26/215 (12%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LS 126
LE ++ G + G +GSGKSTLL ++ + SG +L +G + K +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADT 185
G A +D V + ++++ + PD+ P LV++ + +GL D
Sbjct: 80 IGIAFQYPEDQFF--AERVFDEVAFAVKNFYPDRDPVP----LVKKAMEFVGLDFDSFKD 133
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--- 242
+ + +SGGE+RRV+IA I+ P +L LDEP GLD T LR + +
Sbjct: 134 RVPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK---TDLLRIVEKWKT 186
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G+TVI H + V DR+ +L GK V+ G
Sbjct: 187 LGKTVILISHDIET-VINHVDRVVVLEKGKKVFDG 220
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 26/215 (12%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LS 126
LE ++ G + G +GSGKSTLL ++ + SG +L +G + K +
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 81
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADT 185
G A +D V + ++++ + PD+ P LV++ + +GL D
Sbjct: 82 IGIAFQYPEDQFF--AERVFDEVAFAVKNFYPDRDPVP----LVKKAMEFVGLDFDSFKD 135
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--- 242
+ + +SGGE+RRV+IA I+ P +L LDEP GLD T LR + +
Sbjct: 136 RVPFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK---TDLLRIVEKWKT 188
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
G+TVI H + V DR+ +L GK V+ G
Sbjct: 189 LGKTVILISHDIET-VINHVDRVVVLEKGKKVFDG 222
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 23/245 (9%)
Query: 82 GTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G +GPSG GKSTLL ++ + S G +N T + V Q L
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAERGVGMVFQSYAL 86
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199
L+V E +S+ +L K +++ V + L D + +SGG+
Sbjct: 87 YPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--------KALSGGQ 138
Query: 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASIHQPSSEV 258
R+RV+I ++ P + LDEP S LD+A + + R R GRT+I H E
Sbjct: 139 RQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEA 197
Query: 259 FELFDRLYLLSGGKTVYFGETSAAFEFFAQ---AGFPCPALRNPSDHFL--RCINSDFDK 313
L D++ +L G+ G+ + + A AGF + +P +FL + + D+
Sbjct: 198 MTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF----IGSPKMNFLPVKVTATAIDQ 253
Query: 314 VKATL 318
V+ L
Sbjct: 254 VQVEL 258
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 33/250 (13%)
Query: 82 GTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G +GPSG GKSTLL ++ + S G +N T + V Q L
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAERGVGMVFQSYAL 86
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL-----RG 194
L+V E +S+ +L ++ +I + A+ V+ HL +
Sbjct: 87 YPHLSVAENMSFGLKL------------AGAKKEVINQRVNQVAE-VLQLAHLLDRKPKA 133
Query: 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASIHQ 253
+SGG+R+RV+I ++ P + LDEP S LD+A + + R R GRT+I H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 254 PSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ---AGFPCPALRNPSDHFL--RCIN 308
E L D++ +L G+ G+ + + A AGF + +P +FL +
Sbjct: 194 -QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF----IGSPKMNFLPVKVTA 248
Query: 309 SDFDKVKATL 318
+ D+V+ L
Sbjct: 249 TAIDQVQVEL 258
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 82 GTLTALMGPSGSGKSTLLD---ALSSRLASNAFLSG---TILLNGHKTKLSFGTAAYVTQ 135
G ++ GPSGSGKST L+ L ++ L + TK+ +V Q
Sbjct: 31 GEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
NLI LT E + + E+R + L++ N +
Sbjct: 91 QFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE----RFANHKPNQL 146
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIH 252
SGG+++RV+IA + P ++ DEPT LDS + Q L+ L+ DG+TV+ H
Sbjct: 147 SGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 84/178 (47%), Gaps = 21/178 (11%)
Query: 70 NVLEGLTGYAEPGTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTILLNGHKTKLS 126
VL+GLT PG +TAL+GP+GSGKST LL L L G L+ L
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD----- 181
AA V Q+ L G + RE I+Y + P E+ T V +E G D
Sbjct: 93 TQVAA-VGQEPLLFGR-SFRENIAYGL-----TRTPTMEEITAV---AMESGAHDFISGF 142
Query: 182 --CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
DT +G ++ G+R+ V++A ++ +PRLL LD TS LD+ V + L
Sbjct: 143 PQGYDTEVGETG-NQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 23/239 (9%)
Query: 82 GTLTALMGPSGSGKST---LLDALSSRLASNAFLSGTILLNGHK---TKLSFGTAAYVTQ 135
G L+GPSG GK+T ++ L ++ ++ + K A V Q
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
L +TV + I++ +LR K+P E V +GL T + N R +
Sbjct: 89 SYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL-----TELLNRKPREL 140
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 254
SGG+R+RV++ I+ +P++ +DEP S LD+ + L+ L R G T I H
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD- 199
Query: 255 SSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ---AGFPCPALRNPSDHFLRCINSD 310
E + DR+ +++ G G ++ A AGF + +P +FL I ++
Sbjct: 200 QVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGF----IGSPPMNFLDAIVTE 254
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 21/259 (8%)
Query: 38 EKINTEFSGD-VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKS 96
E+ N ++ + V+ + KD+T G+ L ++ G AL+G SGSGKS
Sbjct: 327 ERDNGKYEAERVNGEVDVKDVTFTY---QGKEKPALSHVSFSIPQGKTVALVGRSGSGKS 383
Query: 97 TLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA-----AYVTQDDNLIGTLTVRETISY 151
T+ + + + SG+I L+GH + T A V+Q+ +L T+ I+Y
Sbjct: 384 TIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAY 439
Query: 152 SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211
+A + R IE + DTVIG + +SGG+R+RV+IA +L
Sbjct: 440 AAEGEYTREQIEQAARQAHAMEFIE-NMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLR 497
Query: 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271
+L LDE TS LD+ + + L L ++ +TV+ H+ S+ E D + ++ G
Sbjct: 498 DAPVLILDEATSALDTESERAIQAALDELQKN-KTVLVIAHRLST--IEQADEILVVDEG 554
Query: 272 KTVYFGETSAAFEFFAQAG 290
+ + G + + AQ G
Sbjct: 555 EIIERGRHA---DLLAQDG 570
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 23/245 (9%)
Query: 82 GTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNL 139
G +GPSG GKSTLL ++ + S G +N T + V Q L
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAERGVGMVFQSYAL 86
Query: 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199
L+V E +S+ +L K +++ V + L D + +SGG+
Sbjct: 87 YPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--------KALSGGQ 138
Query: 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSRDGRTVIASIHQPSSEV 258
R+RV+I ++ P + LD+P S LD+A + + R R GRT+I H E
Sbjct: 139 RQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEA 197
Query: 259 FELFDRLYLLSGGKTVYFGETSAAFEFFAQ---AGFPCPALRNPSDHFL--RCINSDFDK 313
L D++ +L G+ G+ + + A AGF + +P +FL + + D+
Sbjct: 198 MTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF----IGSPKMNFLPVKVTATAIDQ 253
Query: 314 VKATL 318
V+ L
Sbjct: 254 VQVEL 258
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 86/209 (41%), Gaps = 16/209 (7%)
Query: 82 GTLTALMGPSGSGKSTLLD---ALSSRLASNAFLSGTILLNGHK---TKLSFGTAAYVTQ 135
G L+GPSG GK+T L L ++ ++ + K A V Q
Sbjct: 32 GEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQ 91
Query: 136 DDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195
L TV + I++ +LR K+P E V +GL T + N R +
Sbjct: 92 SYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGL-----TELLNRKPREL 143
Query: 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQP 254
SGG+R+RV++ I+ RP++ DEP S LD+ L+ L R G T I H
Sbjct: 144 SGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHD- 202
Query: 255 SSEVFELFDRLYLLSGGKTVYFGETSAAF 283
E DR+ + + G+ G +
Sbjct: 203 QVEAXTXGDRIAVXNKGELQQVGTPDEVY 231
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 9/219 (4%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS- 126
T VL G+ +PG+L A++G +GSGKSTL++ + + L+ KL
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414
Query: 127 -FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT 185
G + V Q+ L T++E + + D++ + K + II L + D+
Sbjct: 415 LRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFII--SLPEGYDS 471
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGR 245
+ R SGG+++R+SIA ++ +P++L LD+ TS +D + L+ ++
Sbjct: 472 RVERGG-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCT 530
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
T I + P++ L D++ +L GK FG E
Sbjct: 531 TFIITQKIPTA---LLADKILVLHEGKVAGFGTHKELLE 566
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 16/200 (8%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLSFGTAA--YVTQDDNLIGTL 143
L+GP+G+GKS L+ ++ + + G + LNG T L +V QD L L
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203
+V I+Y R + R + E+ +G+ D +SGGER+RV
Sbjct: 86 SVYRNIAYGLR-NVERVERDRRVREMAEK----LGIAHLLDRKPAR-----LSGGERQRV 135
Query: 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263
++A ++++PRLL LDEP S +D + + LR + R+ I + E L D
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 264 RLYLLSGGKTVYFGETSAAF 283
+ ++ G+ V G+ F
Sbjct: 196 EVAVMLNGRIVEKGKLKELF 215
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 113/250 (45%), Gaps = 32/250 (12%)
Query: 60 MVTLSN--------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
M+ LSN T L ++ + G + ++G SG+GKSTL+ ++
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN---LLERP 57
Query: 112 LSGTILLNGHK-TKLSFG-------TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW 163
G++L++G + T LS + Q NL+ + TV ++ L D P
Sbjct: 58 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPK 114
Query: 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223
E + V + +GL D D+ N +SGG+++RV+IA + P++L DE TS
Sbjct: 115 DEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282
LD A + + L+ ++R G T++ H+ V + D + ++S G+ + E
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAVISNGELI---EQDTV 225
Query: 283 FEFFAQAGFP 292
E F+ P
Sbjct: 226 SEVFSHPKTP 235
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 39/231 (16%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-------------SRL-ASNAFLSGTIL 117
L+ + E G ++GPSG+GK+T + ++ RL ASN L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL--IVP 78
Query: 118 LNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
K + F T A L LT E I++ KM E R VE +
Sbjct: 79 PEDRKIGMVFQTWA-------LYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKIL 128
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS----AAAFFV 233
+ N R +SGG+++RV++A ++ P LL LDEP S LD+ +A V
Sbjct: 129 DIHHVL-----NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ SR G T++ H P +++F + DR+ +L GK V G+ ++
Sbjct: 184 KE---VQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 120/253 (47%), Gaps = 24/253 (9%)
Query: 43 EFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL 102
E G++ + W S + VL+ +T + +PG AL+GP+GSGK+T+++ L
Sbjct: 350 EVRGEIEFKNVW--------FSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
Query: 103 SSRLASNAFLSGTILLNG---HKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158
+ G IL++G K K S ++ + D ++ + TV+E + Y
Sbjct: 402 MRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATD 458
Query: 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFL 218
+++ + K T + I L + +TV+ + + +S G+R+ ++I L P++L L
Sbjct: 459 EEIKEAAKLTHSDHFI--KHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILIL 515
Query: 219 DEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
DE TS +D+ + + L +G+T I H+ ++ + D + +L G+ V G+
Sbjct: 516 DEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLRDGEIVEMGK 572
Query: 279 TSAAFEFFAQAGF 291
E + GF
Sbjct: 573 HD---ELIQKRGF 582
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 32/250 (12%)
Query: 60 MVTLSN--------GETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
M+ LSN T L ++ + G + ++G SG+GKSTL+ ++
Sbjct: 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN---LLERP 80
Query: 112 LSGTILLNGHK-TKLSFG-------TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPW 163
G++L++G + T LS + Q NL+ + TV ++ L D P
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPK 137
Query: 164 SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223
E + V + +GL D D+ N +SGG+++RV+IA + P++L D+ TS
Sbjct: 138 DEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATS 192
Query: 224 GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282
LD A + + L+ ++R G T++ H+ V + D + ++S G+ + E
Sbjct: 193 ALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAVISNGELI---EQDTV 248
Query: 283 FEFFAQAGFP 292
E F+ P
Sbjct: 249 SEVFSHPKTP 258
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 24/234 (10%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKLS 126
T L ++ + G + ++G SG+GKSTL+ ++ G++L++G + T LS
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN---LLERPTEGSVLVDGQELTTLS 96
Query: 127 FG-------TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGL 179
+ Q NL+ + TV ++ L D P E + V + +GL
Sbjct: 97 ESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGL 153
Query: 180 QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239
D D+ N +SGG+++RV+IA + P++L D+ TS LD A + + L+
Sbjct: 154 GDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 240 LSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFP 292
++R G T++ H+ V + D + ++S G+ + E E F+ P
Sbjct: 209 INRRLGLTILLITHE-XDVVKRICDCVAVISNGELI---EQDTVSEVFSHPKTP 258
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 17/214 (7%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----TKLSF-GTAAYVTQD 136
G AL+G SGSGKST+ +L +R G IL++GH T S A V+Q+
Sbjct: 369 GKTVALVGRSGSGKSTIA-SLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196
+L TV I+Y AR + E + + + DT+IG + +S
Sbjct: 426 VHLFND-TVANNIAY-ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL-LS 482
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256
GG+R+R++IA +L +L LDE TS LD+ + + L L ++ RT + H+ S+
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN-RTSLVIAHRLST 541
Query: 257 EVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
E D + ++ G V G S E AQ G
Sbjct: 542 --IEQADEIVVVEDGIIVERGTHS---ELLAQHG 570
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 39/231 (16%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-------------SRL-ASNAFLSGTIL 117
L+ + E G ++GPSG+GK+T + ++ RL ASN L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL--IVP 78
Query: 118 LNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEM 177
K + F T A L LT E I++ KM E R VE +
Sbjct: 79 PEDRKIGMVFQTWA-------LYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKIL 128
Query: 178 GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS----AAAFFV 233
+ N R +SG +++RV++A ++ P LL LDEP S LD+ +A V
Sbjct: 129 DIHHVL-----NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 234 TQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284
+ SR G T++ H P +++F + DR+ +L GK V G+ ++
Sbjct: 184 KE---VQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 21/241 (8%)
Query: 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108
S L+ KDL V V E +L GL+ PG + A+MGP+GSGKSTL L+ R
Sbjct: 18 SHMLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR-ED 71
Query: 109 NAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRETISYSARLRL 157
GT+ G K L+ F Y + + ++ ++ R
Sbjct: 72 YEVTGGTVEFKG-KDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG 130
Query: 158 PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217
+ + + + L+E I + + + T N G SGGE++R I ++ P L
Sbjct: 131 QETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV---GFSGGEKKRNDILQMAVLEPELCI 187
Query: 218 LDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
LDE SGLD A V + L R+ I H + D +++L G+ V G
Sbjct: 188 LDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
Query: 278 E 278
+
Sbjct: 248 D 248
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 21/238 (8%)
Query: 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAF 111
L+ KDL V V E +L GL+ PG + A+MGP+GSGKSTL L+ R
Sbjct: 2 LSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR-EDYEV 55
Query: 112 LSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160
GT+ G K L+ F Y + + ++ ++ R +
Sbjct: 56 TGGTVEFKG-KDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQET 114
Query: 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220
+ + + L+E I + + + T N G SGGE++R I ++ P L LDE
Sbjct: 115 LDRFDFQDLMEEKIALLKMPEDLLTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDE 171
Query: 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278
SGLD A V + L R+ I H + D +++L G+ V G+
Sbjct: 172 SDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 14/208 (6%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK----TKLSF-GTAAYVTQD 136
G AL+G SGSGKST+ +L +R G IL++GH T S A V+Q+
Sbjct: 369 GKTVALVGRSGSGKSTIA-SLITRFYD--IDEGEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196
+L TV I+Y AR + E + + + DTVIG + +S
Sbjct: 426 VHLFND-TVANNIAY-ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL-LS 482
Query: 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS 256
GG+R+R++IA +L +L LDE TS LD+ + + L L ++ RT + H+ S+
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN-RTSLVIAHRLST 541
Query: 257 EVFELFDRLYLLSGGKTVYFGETSAAFE 284
E D + ++ G V G + E
Sbjct: 542 --IEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 32/214 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT--AAYVTQDDNL 139
G L+GPSG GK+T L ++ L + ++ FG Y+ D
Sbjct: 38 GEFLVLLGPSGCGKTTTLRMIAG------------LEEPTEGRIYFGDRDVTYLPPKDRN 85
Query: 140 IGT----------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
I +TV E I++ +++ K P E V + +++ N
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELL-----N 137
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+ +SGG+R+RV++A I++ P +L +DEP S LD+ + ++ L + +
Sbjct: 138 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 197
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ E + DR+ +++ G+ + G + +
Sbjct: 198 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 231
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 32/214 (14%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT--AAYVTQDDNL 139
G L+GPSG GK+T L ++ L + ++ FG Y+ D
Sbjct: 37 GEFLVLLGPSGCGKTTTLRMIAG------------LEEPTEGRIYFGDRDVTYLPPKDRN 84
Query: 140 IGT----------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN 189
I +TV E I++ +++ K P E V + +++ N
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELL-----N 136
Query: 190 WHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA 249
+ +SGG+R+RV++A I++ P +L +DEP S LD+ + ++ L + +
Sbjct: 137 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196
Query: 250 SIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283
+ E + DR+ +++ G+ + G + +
Sbjct: 197 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 230
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTK 124
H VL+G++ A G + +++G SGSGKST L ++ FL G I++NG
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN-------FLEKPSEGAIIVNGQNIN 71
Query: 125 LSFGTAAYV-TQDDNLIGTLTVRETISYSA------------RLRLPDKMPWSEKRTLVE 171
L + D N + L R T+ + + P ++ K E
Sbjct: 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE 131
Query: 172 RTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231
R + + + G + + +SGG+++RVSIA + M P +L DEPTS LD
Sbjct: 132 RALKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 190
Query: 232 FVTQTLRCLSRDGRTVIASIHQ 253
V + ++ L+ +G+T++ H+
Sbjct: 191 EVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 12/231 (5%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT- 123
+GET +L+G+ G + ALMGP+G+GKSTL L+ G ILL+G
Sbjct: 14 DGET--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD-PEYTVERGEILLDGENIL 70
Query: 124 KLSFGTAA-----YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG 178
+LS A Q + +T+ + + + +L ++ +E T V++ +
Sbjct: 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKA---LE 127
Query: 179 LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
L D ++ + + G SGGE++R I +++ P LDE SGLD A V + +
Sbjct: 128 LLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN 187
Query: 239 CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQA 289
+ + H + D+++++ G+ V G A E A+
Sbjct: 188 AMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKG 238
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 91/216 (42%), Gaps = 32/216 (14%)
Query: 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK------TKLSFG 128
L+G G + L+GP+G+GKSTLL +R A G+I G TKL+
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLL----ARXAGXTSGKGSIQFAGQPLEAWSATKLAL- 73
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
AY++Q T + + L DK + L+ + L D
Sbjct: 74 HRAYLSQQQ----TPPFATPVWHYLTLHQHDKT----RTELLNDVAGALALDDKLGRSTN 125
Query: 189 NWHLRGISGGERRRVSIALEILM-----RP--RLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
+SGGE +RV +A +L P +LL LDEP + LD A + + L LS
Sbjct: 126 Q-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS 180
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ G ++ S H + R +LL GGK + G
Sbjct: 181 QQGLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASG 215
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 24/202 (11%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLN---GHKTKLSFGTAAYVTQDDN 138
G + A++G +G GKSTLLD L L + + G I + G + AY D
Sbjct: 31 GDILAVLGQNGCGKSTLLDLL---LGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIV 87
Query: 139 LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG 198
L+G T T + P S + + + + L T + +SGG
Sbjct: 88 LMGRSTHINTFA----------KPKSHDYQVAMQALDYLNL-----THLAKREFTSLSGG 132
Query: 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSE 257
+R+ + IA I +L+ LDEPTS LD A V L L++ TV+ + HQP ++
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQ 191
Query: 258 VFELFDRLYLLSGGKTVYFGET 279
V + ++ LL+ + FGET
Sbjct: 192 VVAIANKTLLLN-KQNFKFGET 212
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 32/234 (13%)
Query: 57 LTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI 116
+++++ L + L L+G G + L+GP+G+GKSTLL +R+A G+I
Sbjct: 1 MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL----ARMAGMTSGKGSI 56
Query: 117 LLNGHK------TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
G TKL+ AY++Q T + + L DK + L+
Sbjct: 57 QFAGQPLEAWSATKLAL-HRAYLSQQQ----TPPFATPVWHYLTLHQHDK----TRTELL 107
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-----RP--RLLFLDEPTS 223
+ L D +SGGE +RV +A +L P +LL LD+P +
Sbjct: 108 NDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMN 162
Query: 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
LD A + + L LS+ G ++ S H + R +LL GGK + G
Sbjct: 163 SLDVAQQSALDKILSALSQQGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASG 215
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 25/227 (11%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL ++ +PG + ++G SG GK+TLL L+ + SG I L+G KT S T
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSG-KTIFSKNTN 74
Query: 131 --------AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC 182
Y+ Q+ L LTV I+Y + + RT ER IE L+
Sbjct: 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYG--------LGNGKGRTAQERQRIEAMLELT 126
Query: 183 ADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLS 241
+ + + +SGG+++R ++A + P L+ LDEP S LD + + + L
Sbjct: 127 GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR 186
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288
+G++ + H E + DR+ ++ G+ + +T++ E + Q
Sbjct: 187 ANGKSAVFVSHD-REEALQYADRIAVMKQGRIL---QTASPHELYRQ 229
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 99/234 (42%), Gaps = 32/234 (13%)
Query: 57 LTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI 116
+++++ L + L L+G G + L+GP+G+GKSTLL +R+A G+I
Sbjct: 1 MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL----ARMAGMTSGKGSI 56
Query: 117 LLNGHK------TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLV 170
G TKL+ AY++Q T + + L DK + L+
Sbjct: 57 QFAGQPLEAWSATKLALHR-AYLSQQQ----TPPFATPVWHYLTLHQHDK----TRTELL 107
Query: 171 ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM-----RP--RLLFLDEPTS 223
+ L D +SGGE +RV +A +L P +LL LD+P
Sbjct: 108 NDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMC 162
Query: 224 GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
LD A + + L LS+ G ++ S H + R +LL GGK + G
Sbjct: 163 SLDVAQQSALDKILSALSQQGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASG 215
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 24/205 (11%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTIL------LNGHKTKLSFGTA 130
G + ++GP+G+GKST + L+ +L N G I L + KL G
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEI 106
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
V + + + I + + ++ + + +++ +E + + L++ + I
Sbjct: 107 RPVVKPQYV-------DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI--Q 157
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
HL SGGE +RV+IA +L F DEP+S LD + +R LS +G++V+
Sbjct: 158 HL---SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVY 275
H + + L D ++++ G VY
Sbjct: 215 EHDLAVLDY-LSDIIHVVYGEPGVY 238
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 97/259 (37%), Gaps = 43/259 (16%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG-TA 130
LE G + G + ++GP+G GK+T + L+ + + K+ + T
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAG------------VEEPTEGKIEWDLTV 349
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNW 190
AY Q TV E +S +L +E + +G+ D D +
Sbjct: 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDREVNE- 401
Query: 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250
+SGGE +RV+IA +L + LDEP++ LD V++ +R L
Sbjct: 402 ----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALV 457
Query: 251 IHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFLRCI--- 307
+ + + DRL + G Y P R + FL I
Sbjct: 458 VEHDVLXIDYVSDRLXVFEGEPGKY------------GRALPPXGXREGXNRFLASIGIT 505
Query: 308 ---NSDFDKVKATLKGSMK 323
+ D + +A +GS+K
Sbjct: 506 FRRDPDTGRPRANKEGSVK 524
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 32/216 (14%)
Query: 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK------TKLSFG 128
L+G G + L+GP+G+GKSTLL +R A G+I G TKL+
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLL----ARXAGXTSGKGSIQFAGQPLEAWSATKLAL- 73
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188
AY++Q T + + L DK + L+ + L D
Sbjct: 74 HRAYLSQQQ----TPPFATPVWHYLTLHQHDKT----RTELLNDVAGALALDDKLGRSTN 125
Query: 189 NWHLRGISGGERRRVSIALEILM-----RP--RLLFLDEPTSGLDSAAAFFVTQTLRCLS 241
+SGGE +RV +A +L P +LL LDEP + LD A + + L L
Sbjct: 126 Q-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC 180
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ G ++ S H + R +LL GGK + G
Sbjct: 181 QQGLAIVXSSHD-LNHTLRHAHRAWLLKGGKXLASG 215
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 23/221 (10%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN---AFLSGTILLNGHKTKLSFG 128
L+G++ G +T ++GP+GSGKSTL++ ++ L ++ + + N +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP--------WSEKRT-LVERT--IIE- 176
Q + +TV E + P + P W K +VE+ I+E
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEIC--PGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
+ L D G +SGG+ + V I ++ P+++ +DEP +G+ A +
Sbjct: 141 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ L G T + H+ V D LY++ G+ + G
Sbjct: 196 VLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 38/212 (17%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G + ++GP+G+GK+T + L+ +L N L ++ DN+I
Sbjct: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPN---------------LCEDNDSW----DNVIR 143
Query: 142 TLTVRETISYSARLR-----------LPDKMPWSEKRTLVE--RTIIEMG-----LQDCA 183
E +Y RL+ D +P + K + E + + E+G +++
Sbjct: 144 AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELE 203
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ + L +SGGE +RV+IA +L + F DEP+S LD V + +R L+ +
Sbjct: 204 LENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 263
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
G+ V+ H + + L D ++++ G VY
Sbjct: 264 GKAVLVVEHDLAVLDY-LSDVIHVVYGEPGVY 294
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 23/199 (11%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
LE G G + ++GP+G GK+T + L+G K + T A
Sbjct: 358 LEVEPGEIRKGEVIGIVGPNGIGKTTFV----------KMLAGVEEPTEGKVEWDL-TVA 406
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
Y Q TV E +S +L +E + +G+ D D +
Sbjct: 407 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDR-----N 454
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+ +SGGE +RV+IA +L + LDEP++ LD V++ +R L +
Sbjct: 455 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Query: 252 HQPSSEVFELFDRLYLLSG 270
+ + DRL + G
Sbjct: 515 EHDVLMIDYVSDRLIVFEG 533
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 38/212 (17%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G + ++GP+G+GK+T + L+ +L N L ++ DN+I
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPN---------------LCEDNDSW----DNVIR 157
Query: 142 TLTVRETISYSARLR-----------LPDKMPWSEKRTLVE--RTIIEMG-----LQDCA 183
E +Y RL+ D +P + K + E + + E+G +++
Sbjct: 158 AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELE 217
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ + L +SGGE +RV+IA +L + F DEP+S LD V + +R L+ +
Sbjct: 218 LENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
G+ V+ H + + L D ++++ G VY
Sbjct: 278 GKAVLVVEHDLAVLDY-LSDVIHVVYGEPGVY 308
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 23/199 (11%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
LE G G + ++GP+G GK+T + L+G K + T A
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFV----------KMLAGVEEPTEGKVEWDL-TVA 420
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191
Y Q TV E +S +L +E + +G+ D D +
Sbjct: 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDR-----N 468
Query: 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+ +SGGE +RV+IA +L + LDEP++ LD V++ +R L +
Sbjct: 469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 252 HQPSSEVFELFDRLYLLSG 270
+ + DRL + G
Sbjct: 529 EHDVLMIDYVSDRLIVFEG 547
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 23/221 (10%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN---AFLSGTILLNGHKTKLSFG 128
L+G++ G +T ++GP+GSGKSTL++ ++ L ++ + + N +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP--------WSEKRT-LVERT--IIE- 176
Q + +TV E + P + P W K +VE+ I+E
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEIN--PGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
+ L D G +SGG+ + V I ++ P+++ +D+P +G+ A +
Sbjct: 141 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNH 195
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ L G T + H+ V D LY++ G+ + G
Sbjct: 196 VLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 23/221 (10%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN---AFLSGTILLNGHKTKLSFG 128
L+G++ G +T ++GP+GSGKSTL++ ++ L ++ + + N +L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMP--------WSEKRT-LVERT--IIE- 176
Q + +TV E + P + P W K +VE+ I+E
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEIN--PGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 177 MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT 236
+ L D G +SGG+ + V I ++ P+++ +DEP +G+ A +
Sbjct: 141 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 237 LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
+ L G T + H+ V D LY++ G+ + G
Sbjct: 196 VLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 32/212 (15%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK------LSFGTAAYVTQ 135
G + L+G +G+GK+T L A++ + + G I+ NG ++ A V +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRXGIALVPE 88
Query: 136 DDNLIGTLTVRETISYSARLR-----LPDKMPW--SEKRTLVERTIIEMGLQDCADTVIG 188
+ LTV E + A R + + W S L ER L+ T
Sbjct: 89 GRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKER------LKQLGGT--- 139
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVI 248
+SGGE++ ++I + RP+LL DEP+ GL V + ++ ++++G T++
Sbjct: 140 ------LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 249 ASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280
+ Q + ++ Y+L G+ V G+ S
Sbjct: 194 L-VEQNALGALKVAHYGYVLETGQIVLEGKAS 224
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 21/202 (10%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
++L +DL+V G VLE +T E G + GP+G GK+TLL +S+ L
Sbjct: 9 SKLEIRDLSV------GYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP- 61
Query: 110 AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTL 169
L G I+ NG G ++ ++ + ++V + + A L + K
Sbjct: 62 --LKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-------YGVK--- 109
Query: 170 VERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229
V + I M + + + L +S G RRV +A +L+ + LD+P +D +
Sbjct: 110 VNKNEI-MDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 230 AFFVTQT-LRCLSRDGRTVIAS 250
V ++ L L G +I+S
Sbjct: 169 KHKVLKSILEILKEKGIVIISS 190
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 31/225 (13%)
Query: 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAA 131
L G+T G L A++G G GKS+LL AL LA + G + + G+ A
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSAL---LAEMDKVEGHVAIK--------GSVA 69
Query: 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTII--EMGLQDCAD-TVIG 188
YV Q I ++RE I + +L P R++++ + ++ + D T IG
Sbjct: 70 YVPQ-QAWIQNDSLRENILFGCQLEEP------YYRSVIQACALLPDLEILPSGDRTEIG 122
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL---RCLSRDGR 245
+ +SGG+++RVS+A + + D+P S +D+ + + + + + ++ +
Sbjct: 123 EKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN-K 180
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAG 290
T I H S D + ++SGGK E + E A+ G
Sbjct: 181 TRILVTH--SMSYLPQVDVIIVMSGGK---ISEMGSYQELLARDG 220
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 35/203 (17%)
Query: 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109
++T KDLT T + +LE ++ PG L+G +GSGKSTLL A L +
Sbjct: 18 GQMTVKDLTAKYTEGG---NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 110 AFLSGTILLNG--------HKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161
G I ++G + + +FG V I + T R+ + +A D+
Sbjct: 74 ---EGEIQIDGVSWDSITLEQWRKAFG----VIPQKVFIFSGTFRKNLDPNAAHS--DQE 124
Query: 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG------GERRRVSIALEILMRPRL 215
W + E+GL+ + G + G G ++ + +A +L + ++
Sbjct: 125 IW--------KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176
Query: 216 LFLDEPTSGLDSAAAFFVTQTLR 238
L LDEP++ LD + +TL+
Sbjct: 177 LLLDEPSAHLDPVTYQIIRRTLK 199
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 14/163 (8%)
Query: 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIG 141
G ++GP+GSGK+TLL A+S L SG I +NG + + Y+ NL
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLLP----YSGNIFINGMEVR---KIRNYIRYSTNLPE 82
Query: 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201
+ T++ L + E + L +EM I L +S G+
Sbjct: 83 AYEIGVTVNDIVYL-------YEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSV 135
Query: 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
V +L + +P ++ LDEP +D+A +++ ++ ++G
Sbjct: 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 35/215 (16%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G + A+ G +GSGK++LL + L ++ G I H ++SF +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGII---KHSGRVSFCSQ 106
Query: 131 -AYV---TQDDNLIGTLTVRETISYSARLRLPDKMPWSE--KRTLVERTIIEMGLQDCAD 184
+++ T +N+IG +SY D+ + K +++ I + QD +
Sbjct: 107 FSWIMPGTIKENIIG-------VSY-------DEYRYKSVVKACQLQQDITKFAEQD--N 150
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSR 242
TV+G + +SGG+R R+S+A + L LD P LD + F + + ++
Sbjct: 151 TVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 209
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
R ++ S E D++ +L G + ++G
Sbjct: 210 KTRILVTS----KMEHLRKADKILILHQGSSYFYG 240
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 26/211 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G + A+ G +GSGK++LL + L ++ G I H ++SF +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGII---KHSGRVSFCSQ 106
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE--KRTLVERTIIEMGLQDCADTVIG 188
+ I T++E I + D+ + K +++ I + QD +TV+G
Sbjct: 107 F------SWIMPGTIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQD--NTVLG 155
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGRT 246
+ +SGG+R R+S+A + L LD P LD + F + + ++ R
Sbjct: 156 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
++ S E D++ +L G + ++G
Sbjct: 215 LVTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 34/158 (21%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146
L G +G+GK+TLL+ L+ A SGT+ L G G Y + TVR
Sbjct: 52 LYGLNGAGKTTLLNILN---AYEPATSGTVNLFGKXP----GKVGYSAE--------TVR 96
Query: 147 ETISYSARLRLPDKMPWSEK--RTLVERTIIEMGL-QDCADTVIGNWH----LRG----- 194
+ I + + L +K E+ ++ +G+ QD D + H L G
Sbjct: 97 QHIGFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 195 ------ISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
+S GE++RV IA + +P++L LDEP +GLD
Sbjct: 156 QQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 26/211 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G + A+ G +GSGK++LL + L ++ G I H ++SF +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGII---KHSGRVSFCSQ 106
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE--KRTLVERTIIEMGLQDCADTVIG 188
+ I T++E I + D+ + K +++ I + QD +TV+G
Sbjct: 107 F------SWIMPGTIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQD--NTVLG 155
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGRT 246
+ +SGG+R R+S+A + L LD P LD + F + + ++ R
Sbjct: 156 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
++ S E D++ +L G + ++G
Sbjct: 215 LVTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 101/236 (42%), Gaps = 27/236 (11%)
Query: 35 IWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSG 94
+ KE + + S D+ ++ W + + G+ V++ G A+ G + ++GP+G G
Sbjct: 253 MLKEVSDLDLSKDLKTKMKWTKIIKKL----GDFQLVVD--NGEAKEGEIIGILGPNGIG 306
Query: 95 KSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154
K+T L + ++ G++ K LS+ D TV++ + +++
Sbjct: 307 KTTFARILVGEITAD---EGSV--TPEKQILSYKPQRIFPNYDG-----TVQQYLENASK 356
Query: 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR 214
L S E + L ++ + + +SGGE +++ IA +
Sbjct: 357 DAL------STSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEAD 405
Query: 215 LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270
L LD+P+S LD + V + ++ ++R+ + V I S + DR+ + G
Sbjct: 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 49/303 (16%)
Query: 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGT 142
T+ ++G +G GK+T+L L+G I+ N FG D ++
Sbjct: 26 TILGVLGKNGVGKTTVL----------KILAGEIIPN-------FGDPNSKVGKDEVLKR 68
Query: 143 LTVRETISY-----SARLRLPDKMPWSE------KRTLVE--RTIIEMGLQDCADTVIG- 188
+E +Y S L++ K+ + E K T+ E I E G +D ++
Sbjct: 69 FRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNM 128
Query: 189 ----NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG 244
N +SGG +R+ +A +L + D+P+S LD + + +R L ++
Sbjct: 129 TNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN- 187
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPSDHFL 304
+ VI H + L D ++++ G +VY G S ++ A+ G + N +L
Sbjct: 188 KYVIVVDHDLIVLDY-LTDLIHIIYGESSVY-GRVSKSYA--ARVG-----INNFLKGYL 238
Query: 305 RCINSDF--DKVKATLKGSMKLKFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKV 362
N D++K LK L + S D K+ + IK L DF + A + ++
Sbjct: 239 PAENMKIRPDEIKFMLKEVSDL--DLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEI 296
Query: 363 EGI 365
GI
Sbjct: 297 IGI 299
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 186 VIGNWHL----RGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQ 235
+I +W + RG+SGGER +SI+L + + R F+DE S LD+ +
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS 326
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
L+ L R + ++ H E E FDR ++GG V
Sbjct: 327 VLKELERLNKVIVFITH--DREFSEAFDRKLRITGGVVV 363
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASNA 110
+T + GP+G+GKS+L +A+S L N
Sbjct: 25 ITVVEGPNGAGKSSLFEAISFALFGNG 51
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 186 VIGNWHL----RGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQ 235
+I +W + RG+SGGER +SI+L + R F+DE S LD+ +
Sbjct: 267 IIKDWGIERPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS 326
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
L+ L R + ++ H E E FDR ++GG V
Sbjct: 327 VLKELERLNKVIVFITH--DREFSEAFDRKLRITGGVVV 363
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASNA 110
+T + GP+G+GKS+L +A+S L N
Sbjct: 25 ITVVEGPNGAGKSSLFEAISFALFGNG 51
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 30/213 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G + A+ G +GSGK++LL + L ++ G I H ++SF +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGII---KHSGRVSFCSQ 106
Query: 131 -AYV---TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
+++ T +N+I ++ E Y + + K +++ I + QD +TV
Sbjct: 107 FSWIMPGTIKENIISGVSYDE-YRYKSVV----------KACQLQQDITKFAEQD--NTV 153
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDG 244
+G + +SGG+R R+S+A + L LD P LD + F + + ++
Sbjct: 154 LGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
R ++ S E D++ +L G + ++G
Sbjct: 213 RILVTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 167 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
R +E +GL ++ + +RG+SGG++ ++ +A RP L+ LDEPT+ LD
Sbjct: 871 RKEIEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
Query: 227 SAAAFFVTQTLR 238
+ +++ L+
Sbjct: 928 RDSLGALSKALK 939
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 25/151 (16%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146
+ GP+G GKSTL A+++ G + +G T+ T YV D + GT +
Sbjct: 460 ICGPNGCGKSTLXRAIAN---------GQV--DGFPTQEECRTV-YVEHD--IDGTHSDT 505
Query: 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206
+ + + K +K +IE G D I + +SGG + ++++A
Sbjct: 506 SVLDFVFESGVGTKEAIKDK-------LIEFGF---TDEXIAX-PISALSGGWKXKLALA 554
Query: 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
+L +L LDEPT+ LD+ ++ L
Sbjct: 555 RAVLRNADILLLDEPTNHLDTVNVAWLVNYL 585
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 86 ALMGPSGSGKSTLLDALSSRL 106
A++GP+G+GKSTL++ L+ L
Sbjct: 697 AVIGPNGAGKSTLINVLTGEL 717
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 167 RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226
R +E +GL ++ + +RG+SGG++ ++ +A RP L+ LDEPT+ LD
Sbjct: 877 RKEIEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Query: 227 SAAAFFVTQTLR 238
+ +++ L+
Sbjct: 934 RDSLGALSKALK 945
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 25/151 (16%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146
+ GP+G GKSTL A+++ G + +G T+ T YV D + GT +
Sbjct: 466 ICGPNGCGKSTLXRAIAN---------GQV--DGFPTQEECRTV-YVEHD--IDGTHSDT 511
Query: 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206
+ + + K +K +IE G D I + +SGG + ++++A
Sbjct: 512 SVLDFVFESGVGTKEAIKDK-------LIEFGF---TDEXIAX-PISALSGGWKXKLALA 560
Query: 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
+L +L LDEPT+ LD+ ++ L
Sbjct: 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 86 ALMGPSGSGKSTLLDALSSRL 106
A++GP+G+GKSTL++ L+ L
Sbjct: 703 AVIGPNGAGKSTLINVLTGEL 723
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 26/211 (12%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G + A+ G +GSGK++LL + L ++ G I H ++SF +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGII---KHSGRVSFCSQ 106
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE--KRTLVERTIIEMGLQDCADTVIG 188
+ I T++E I R D+ + K +++ I + QD +TV+G
Sbjct: 107 F------SWIMPGTIKENI---IRGVSYDEYRYKSVVKACQLQQDITKFAEQD--NTVLG 155
Query: 189 NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGRT 246
+ +SGG+R R+S+A + L LD P LD + F + + ++ R
Sbjct: 156 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 247 VIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
++ S E D++ +L G + ++G
Sbjct: 215 LVTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
++ + +RG+SGG++ ++ +A RP L+ LDEPT+ LD + +++ L+
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK 945
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 25/151 (16%)
Query: 87 LMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146
+ GP+G GKSTL+ A+++ G + +G T+ T YV D + GT +
Sbjct: 466 ICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEECRTV-YVEHD--IDGTHSDT 511
Query: 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206
+ + + K +K +IE G D +I + +SGG + ++++A
Sbjct: 512 SVLDFVFESGVGTKEAIKDK-------LIEFGF---TDEMIA-MPISALSGGWKMKLALA 560
Query: 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237
+L +L LDEPT+ LD+ ++ L
Sbjct: 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 86 ALMGPSGSGKSTLLDALSSRL 106
A++GP+G+GKSTL++ L+ L
Sbjct: 703 AVIGPNGAGKSTLINVLTGEL 723
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 29/212 (13%)
Query: 81 PGTLTALMGPSGSGKSTLLDALSSRLASN--------------AFLSGTILLNGHKTKLS 126
PG + L+G +G GKST L L+ + N + G+ L N L
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 127 FGTAAYVTQD--DNLIGTLT-VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA 183
A + DN+ + + + +LR+ +K P V+R I + L++
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPED-----VKRYIKILQLEN-- 213
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD 243
+ + +SGGE +R +I + + + DEP+S LD Q +R L
Sbjct: 214 ---VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 244 GRTVIASIHQPSSEVFELFDRLYLLSGGKTVY 275
+ VI H S + L D + ++ G +VY
Sbjct: 271 TKYVICVEHDLSVLDY-LSDFVCIIYGVPSVY 301
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 184 DTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR 238
D +I + ++ +SGGE +RV+I L + + + +DEP++ LDS ++ +R
Sbjct: 458 DDII-DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 35/215 (16%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G L A+ G +G+GK++LL + L + G I H ++SF +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKI---KHSGRISFCSQ 106
Query: 131 -AYV---TQDDNLIGTLTVRETISYSARLRLPDKMPWSE--KRTLVERTIIEMGLQDCAD 184
+++ T +N+IG +SY D+ + K +E I + +D +
Sbjct: 107 NSWIMPGTIKENIIG-------VSY-------DEYRYRSVIKACQLEEDISKFAEKD--N 150
Query: 185 TVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSR 242
V+G + +SGG+R R+S+A + L LD P LD + F + + ++
Sbjct: 151 IVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 243 DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
R ++ S E + D++ +L G + ++G
Sbjct: 210 KTRILVTS----KMEHLKKADKILILHEGSSYFYG 240
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 37/216 (17%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G L A+ G +G+GK++LL + L + G I H ++SF +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKI---KHSGRISFCSQ 106
Query: 131 -AYV---TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT- 185
+++ T +N+IG +SY D+ + R++++ +E + A+
Sbjct: 107 NSWIMPGTIKENIIG-------VSY-------DEYRY---RSVIKACQLEEDISKFAEKD 149
Query: 186 --VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLS 241
V+G + +SGG+R R+S+A + L LD P LD + F + + ++
Sbjct: 150 NIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
R ++ S E + D++ +L G + ++G
Sbjct: 209 NKTRILVTS----KMEHLKKADKILILHEGSSYFYG 240
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 96/213 (45%), Gaps = 30/213 (14%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G L A+ G +G+GK++LL + L + G I H ++SF +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKI---KHSGRISFCSQ 106
Query: 131 -AYV---TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV 186
+++ T +N+I ++ E Y R + K +E I + +D + V
Sbjct: 107 FSWIMPGTIKENIIAGVSYDE---YRYRSVI--------KACQLEEDISKFAEKD--NIV 153
Query: 187 IGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDG 244
+G + +SGG+R R+S+A + L LD P LD + F + + ++
Sbjct: 154 LGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 212
Query: 245 RTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
R ++ S E + D++ +L G + ++G
Sbjct: 213 RILVTS----KMEHLKKADKILILHEGSSYFYG 241
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 37/216 (17%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G L A+ G +G+GK++LL + L + G I H ++SF +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKI---KHSGRISFCSQ 76
Query: 131 -AYV---TQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT- 185
+++ T +N+IG +SY D+ + R++++ +E + A+
Sbjct: 77 FSWIMPGTIKENIIG-------VSY-------DEYRY---RSVIKACQLEEDISKFAEKD 119
Query: 186 --VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLS 241
V+G + +SGG+R R+S+A + L LD P LD + F + + ++
Sbjct: 120 NIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 178
Query: 242 RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
R ++ S E + D++ +L G + ++G
Sbjct: 179 NKTRILVTS----KMEHLKKADKILILHEGSSYFYG 210
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G L A+ G +G+GK++LL + L + G I H ++SF +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKI---KHSGRISFCSQ 88
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---VI 187
+ I T++E I + D+ + R++++ +E + A+ V+
Sbjct: 89 F------SWIMPGTIKENIIFGVSY---DEYRY---RSVIKACQLEEDISKFAEKDNIVL 136
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGR 245
G + +SGG+R R+S+A + L LD P LD + F + + ++ R
Sbjct: 137 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 195
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
++ S E + D++ +L G + ++G
Sbjct: 196 ILVTS----KMEHLKKADKILILHEGSSYFYG 223
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130
VL+ + E G L A+ G +G+GK++LL + L + G I H ++SF +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKI---KHSGRISFCSQ 76
Query: 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADT---VI 187
+ I T++E I + D+ + R++++ +E + A+ V+
Sbjct: 77 F------SWIMPGTIKENIIFGVSY---DEYRY---RSVIKACQLEEDISKFAEKDNIVL 124
Query: 188 GNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD--SAAAFFVTQTLRCLSRDGR 245
G + +SGG+R R+S+A + L LD P LD + F + + ++ R
Sbjct: 125 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 183
Query: 246 TVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277
++ S E + D++ +L G + ++G
Sbjct: 184 ILVTS----KMEHLKKADKILILHEGSSYFYG 211
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 195 ISGGERRRVSIALEILMRPR---LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGGE +R+ +A E+ R + LDEPT+GL A + + L L G TVIA
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 252 HQ 253
H+
Sbjct: 791 HK 792
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 65 NGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLL-DALSSRLASN 109
NG T N L+ L G +T++ G SGSGKSTL+ AL LA++
Sbjct: 506 NGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAH 551
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 195 ISGGERRRVSIALEILMRPR---LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGGE +RV +A E+ R L LDEPT+GL + L L +G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 252 HQ 253
H
Sbjct: 604 HN 605
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 195 ISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
+SGGE +R+ +A +I R L LDEP+ GL + TL+ + G T+I H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 253 QPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300
+ D L + G ++ GE A AG P + +P+
Sbjct: 263 --DEDTMLAADYLIDIGPGAGIHGGEVVA-------AGTPEEVMNDPN 301
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 195 ISGGERRRVSIALEILMRPR---LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGGE +RV +A E+ R L LDEPT+GL + L L +G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 252 H 252
H
Sbjct: 906 H 906
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 195 ISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
+SGGE +R+ +A +I R L LDEP+ GL + TL+ + G T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 253 QPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQAGFPCPALRNPS 300
+ D L + G ++ GE A AG P + +P+
Sbjct: 565 --DEDTMLAADYLIDIGPGAGIHGGEVVA-------AGTPEEVMNDPN 603
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 195 ISGGERRRVSIALEILMRPR---LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGGE +RV +A E+ R L LDEPT+GL + L L +G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 252 H 252
H
Sbjct: 906 H 906
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 195 ISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
+SGGE +R+ +A +I R L LDEP+ GL + TL+ G T+I H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 253 QPSSEVFELFDRLYLLSGGKTVYFGETSAA 282
+ + D L + G ++ GE AA
Sbjct: 565 DEDTXL--AADYLIDIGPGAGIHGGEVVAA 592
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 186 VIGNWHL----RGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFFVTQ 235
+I +W + RG+SGGER +SI+L + + R F+DE S L + +
Sbjct: 284 IIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLCTENKEKIAS 343
Query: 236 TLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274
L+ L R + ++ E E FDR ++GG V
Sbjct: 344 VLKELERLNKVIV--FITCDREFSEAFDRKLRITGGVVV 380
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASNA 110
+T + GP+G+GKS+L +A+S L N
Sbjct: 42 ITVVEGPNGAGKSSLFEAISFALFGNG 68
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 195 ISGGERRRVSIALEILMRPR---LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI 251
+SGGE +R+ +A E+ R L LDEPT GL + + L L G TVI
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865
Query: 252 HQ 253
H
Sbjct: 866 HN 867
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 195 ISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH 252
+SGGE +R+ +A +I + + LDEPT GL + +TL+ L G TVI H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 77 GYAEPGTLTALMGPSGSGKSTLLDALS 103
G+ E T+++GP+GSGKS ++DA+S
Sbjct: 22 GFGE-SNFTSIIGPNGSGKSNMMDAIS 47
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLL-DALSSRLASNAFLSG 114
D +T+ HN L G+ G LT++ G SGSGKSTL+ D L++ LA+ L+G
Sbjct: 643 DPRRQLTVVGAREHN-LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANR--LNG 699
Query: 115 TILLNGHKTKLS 126
+ G T+++
Sbjct: 700 ARQVPGRHTRVT 711
>pdb|3HJZ|A Chain A, The Structure Of An Aldolase From Prochlorococcus Marinus
Length = 334
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 28/213 (13%)
Query: 292 PCPALRNPSDHFLRCINSDFDKVKATLKGSMKLKFETSDDPLEK-ITTAEAIKNLIDFYQ 350
P A NPS N D+ K+ + E+S++ L + E IK +D Q
Sbjct: 30 PRDATTNPSLILAAAKNPDYVKL-------IDKAIESSENTLPNGFSEIELIKETVD--Q 80
Query: 351 TSQHSYAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVI 410
S + KE ++ IS T +DA + SF +A R +N+ ++FG R++I
Sbjct: 81 VS--VFFGKEILKIISGRVSTEVDA---RLSFDTEATVKKARKLINLYKNFGIEKERILI 135
Query: 411 YVVVT---ICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVSLLI 467
+ T I I G N L C + I F + D +
Sbjct: 136 KIAATWEGIKAAEILEKEGIKCNLTLLFNFCQAVTCANANITLISPFVGRILDWHKA--- 192
Query: 468 FYPTAVAKFI---KRGVINISSVIFFRFFKEKG 497
T FI GVI+++ + +++FKEKG
Sbjct: 193 --KTGKTSFIGAEDPGVISVTQI--YKYFKEKG 221
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 6/37 (16%)
Query: 72 LEGLTGYAEPGTL------TALMGPSGSGKSTLLDAL 102
L+G + P + TA++GP+GSGKS ++DA+
Sbjct: 8 LKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTIL 117
L + GP+G GKST L+++L ++A++ G I+
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37
>pdb|1Y6Z|A Chain A, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
Protein Pf14_0417
pdb|1Y6Z|B Chain B, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
Protein Pf14_0417
Length = 263
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 126 SFGTAAYVTQDDNLIGT-LTVRETISYSARLRLPDKMPWSEKRTLVERT-------IIEM 177
SF + DD L V IS+++ L +P +PW + + + + +
Sbjct: 21 SFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80
Query: 178 GLQDCADTVIGNW--HLRGISGGERRRVSIALEILMRPRLL 216
+ D I W LRGI E +++ EIL + ++L
Sbjct: 81 FINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKML 121
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-TVIGNWHLRGI 195
+ RL+LP+ + SE+ + I + G CAD T NW +RG+
Sbjct: 152 FMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGV 197
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 40 INTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTL 98
+ TE++G++ + LTVM L H + + G +T G SG+GK+TL
Sbjct: 175 LGTEYAGEMKKGI----LTVMFELMPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTTL 229
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 84 LTALMGPSGSGKSTLLDAL 102
+TA++GP+GSGKS + DA+
Sbjct: 26 VTAVVGPNGSGKSNITDAI 44
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 72 LEGLTGYA--EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129
++ LT Y E G + L G GSGK+T+ L+ L + +L+G + +
Sbjct: 1 MQALTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGY--RVEVLDGDWARTTVSE 58
Query: 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKM--------PWSEKRTLVERTIIEMGL 179
A T+++ L + I++ ARL + + P+ + R +V R + E G+
Sbjct: 59 GAGFTREERLRHL----KRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGI 112
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120
VLE L L AL G GSGKSTL + L++ L++ + + +G
Sbjct: 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPXDG 60
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 54 WKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLS 113
++D V + +T ++ L Y E G + L GPSG GKS++L L+ +S
Sbjct: 138 YRDAGYDVLKVSAKTGEGIDELVDYLE-GFICILAGPSGVGKSSILSRLTGEELRTQEVS 196
Query: 114 GTILLNGHKTK----LSFGTAAYV 133
H T + FG ++V
Sbjct: 197 EKTERGRHTTTGVRLIPFGKGSFV 220
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-TVIGNWHLRGI 195
+ RL+LP+ + S + + I + G + CAD T NW +RG+
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGV 180
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-TVIGNWHLRGI 195
+ RL+LP+ + S + + I + G + CAD T NW +RG+
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGV 180
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-TVIGNWHLRGI 195
+ RL+LP+ + S + + I + G + CAD T NW +RG+
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGV 180
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-TVIGNWHLRGI 195
+ RL+LP+ + S + + I + G + CAD T NW +RG+
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGV 180
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-TVIGNWHLRGI 195
+ RL+LP+ + S + + I + G + CAD T NW +RG+
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGV 180
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-TVIGNWHLRGI 195
+ RL+LP+ + S + + I + G + CAD T NW +RG+
Sbjct: 135 FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGV 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,735,114
Number of Sequences: 62578
Number of extensions: 542462
Number of successful extensions: 1836
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1616
Number of HSP's gapped (non-prelim): 180
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)