Query 010938
Match_columns 497
No_of_seqs 439 out of 3090
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:25:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.6E-51 5.6E-56 423.2 29.7 221 50-283 23-252 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 2E-51 6.8E-56 422.2 28.4 217 51-284 4-228 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 3.3E-51 1.1E-55 423.3 30.1 217 51-284 3-223 (381)
4 3tif_A Uncharacterized ABC tra 100.0 6.1E-51 2.1E-55 397.3 29.1 220 52-282 2-232 (235)
5 2olj_A Amino acid ABC transpor 100.0 1.4E-50 4.8E-55 400.9 29.5 216 51-283 24-247 (263)
6 1b0u_A Histidine permease; ABC 100.0 1.1E-50 3.8E-55 401.6 28.7 216 51-283 6-241 (262)
7 2pcj_A ABC transporter, lipopr 100.0 2E-50 6.9E-55 390.9 29.5 211 51-279 4-223 (224)
8 3gfo_A Cobalt import ATP-bindi 100.0 9.1E-51 3.1E-55 404.6 27.1 218 51-284 7-233 (275)
9 1vpl_A ABC transporter, ATP-bi 100.0 4.4E-50 1.5E-54 395.9 29.7 217 51-284 15-235 (256)
10 1g6h_A High-affinity branched- 100.0 3E-50 1E-54 397.5 26.6 217 51-281 7-239 (257)
11 1g29_1 MALK, maltose transport 100.0 8.4E-50 2.9E-54 413.2 31.0 217 51-284 3-229 (372)
12 2yyz_A Sugar ABC transporter, 100.0 4E-50 1.4E-54 413.3 28.1 217 51-284 3-223 (359)
13 2it1_A 362AA long hypothetical 100.0 5.1E-50 1.7E-54 413.0 28.8 217 51-284 3-223 (362)
14 1z47_A CYSA, putative ABC-tran 100.0 6.1E-50 2.1E-54 411.1 28.5 219 49-283 12-234 (355)
15 1oxx_K GLCV, glucose, ABC tran 100.0 5.4E-50 1.8E-54 412.1 27.8 216 51-283 3-229 (353)
16 1ji0_A ABC transporter; ATP bi 100.0 8.6E-50 2.9E-54 390.4 27.4 215 51-283 6-227 (240)
17 4g1u_C Hemin import ATP-bindin 100.0 9.8E-50 3.4E-54 395.6 26.8 215 50-283 10-236 (266)
18 1v43_A Sugar-binding transport 100.0 8.7E-50 3E-54 412.6 27.2 217 51-284 11-231 (372)
19 3nh6_A ATP-binding cassette SU 100.0 1.1E-49 3.8E-54 402.1 25.6 247 1-284 19-277 (306)
20 3d31_A Sulfate/molybdate ABC t 100.0 3.2E-49 1.1E-53 405.3 26.2 211 52-283 2-216 (348)
21 2yz2_A Putative ABC transporte 100.0 1E-48 3.4E-53 388.5 25.5 218 51-284 2-227 (266)
22 2onk_A Molybdate/tungstate ABC 100.0 1E-48 3.6E-53 382.6 25.1 210 52-283 2-215 (240)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 2.4E-48 8.2E-53 382.3 25.4 216 51-280 3-229 (250)
24 2ihy_A ABC transporter, ATP-bi 100.0 1.9E-48 6.4E-53 388.9 22.4 219 50-282 20-250 (279)
25 2nq2_C Hypothetical ABC transp 100.0 3.3E-47 1.1E-51 374.8 28.9 210 51-282 4-215 (253)
26 2zu0_C Probable ATP-dependent 100.0 2.4E-47 8.4E-52 378.7 27.5 221 51-284 20-254 (267)
27 2ixe_A Antigen peptide transpo 100.0 1.3E-47 4.5E-52 381.3 21.4 217 51-284 16-245 (271)
28 2ff7_A Alpha-hemolysin translo 100.0 4.1E-47 1.4E-51 372.9 24.0 214 50-283 6-231 (247)
29 2qi9_C Vitamin B12 import ATP- 100.0 9E-47 3.1E-51 370.8 24.9 205 51-282 4-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 4.9E-47 1.7E-51 371.5 19.1 212 52-283 2-225 (243)
31 1sgw_A Putative ABC transporte 100.0 5.6E-47 1.9E-51 364.1 17.0 203 49-273 8-210 (214)
32 2ghi_A Transport protein; mult 100.0 8.5E-46 2.9E-50 366.2 24.9 214 51-284 17-242 (260)
33 2pjz_A Hypothetical protein ST 100.0 8.7E-46 3E-50 366.5 24.0 208 52-283 2-214 (263)
34 4a82_A Cystic fibrosis transme 100.0 1.7E-45 5.8E-50 402.6 25.3 247 2-284 306-564 (578)
35 3qf4_A ABC transporter, ATP-bi 100.0 1.4E-45 4.7E-50 403.9 24.4 247 2-284 308-566 (587)
36 2yl4_A ATP-binding cassette SU 100.0 4.7E-45 1.6E-49 400.4 27.8 250 2-283 307-569 (595)
37 3b60_A Lipid A export ATP-bind 100.0 4.2E-45 1.4E-49 399.8 26.4 246 2-284 310-567 (582)
38 3b5x_A Lipid A export ATP-bind 100.0 5.3E-45 1.8E-49 399.0 26.8 246 2-284 310-567 (582)
39 2pze_A Cystic fibrosis transme 100.0 4.1E-45 1.4E-49 354.8 22.9 204 51-283 6-217 (229)
40 2cbz_A Multidrug resistance-as 100.0 4.6E-45 1.6E-49 356.2 21.1 208 51-284 3-217 (237)
41 3qf4_B Uncharacterized ABC tra 100.0 3E-45 1E-49 402.1 19.8 245 2-284 322-578 (598)
42 3gd7_A Fusion complex of cysti 100.0 3.1E-45 1.1E-49 380.8 17.7 214 50-284 18-242 (390)
43 4f4c_A Multidrug resistance pr 100.0 4.4E-44 1.5E-48 422.8 22.1 250 2-284 1043-1304(1321)
44 4f4c_A Multidrug resistance pr 100.0 1.5E-43 5.1E-48 418.2 21.4 249 2-284 381-641 (1321)
45 2bbs_A Cystic fibrosis transme 100.0 1.6E-42 5.4E-47 347.7 18.6 199 51-283 40-246 (290)
46 3g5u_A MCG1178, multidrug resi 100.0 2.9E-42 9.8E-47 406.4 22.2 251 2-284 353-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 5.3E-41 1.8E-45 395.7 26.2 251 2-284 996-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 1.4E-38 4.8E-43 348.5 22.8 206 49-284 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.6E-38 5.4E-43 344.2 21.1 206 49-284 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 7.7E-38 2.6E-42 338.4 23.8 207 49-283 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 1.7E-36 5.8E-41 331.6 19.9 202 55-284 350-559 (608)
52 2iw3_A Elongation factor 3A; a 100.0 1.9E-35 6.5E-40 335.1 24.4 201 48-284 432-635 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 5.3E-36 1.8E-40 332.9 17.9 208 68-283 30-297 (670)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.7E-36 5.9E-41 328.2 13.4 194 52-271 21-234 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 1.7E-36 6E-41 331.9 13.3 192 55-272 95-305 (607)
56 2iw3_A Elongation factor 3A; a 100.0 1.6E-35 5.6E-40 335.6 15.3 208 50-278 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 3.1E-34 1.1E-38 318.6 20.2 195 69-283 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 5.9E-33 2E-37 303.6 14.2 196 56-275 82-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.6E-32 5.5E-37 296.8 13.8 172 79-273 22-215 (538)
60 2r6f_A Excinuclease ABC subuni 100.0 1.8E-31 6.3E-36 300.5 18.2 208 50-283 628-941 (972)
61 3pih_A Uvrabc system protein A 100.0 9.7E-31 3.3E-35 296.2 24.2 200 69-283 597-901 (916)
62 2vf7_A UVRA2, excinuclease ABC 100.0 4E-31 1.4E-35 297.1 19.2 208 50-283 501-826 (842)
63 2ygr_A Uvrabc system protein A 100.0 1.2E-30 4.2E-35 294.8 19.5 209 50-284 646-960 (993)
64 4aby_A DNA repair protein RECN 100.0 3.1E-29 1.1E-33 262.4 20.8 204 69-277 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 2E-32 6.9E-37 290.6 -8.5 186 73-283 129-337 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 5.8E-26 2E-30 234.7 18.5 84 190-275 275-364 (365)
67 3b85_A Phosphate starvation-in 99.9 1.2E-29 4.1E-34 242.5 -13.4 140 68-254 12-158 (208)
68 1e69_A Chromosome segregation 99.9 1.6E-25 5.3E-30 227.5 14.0 88 191-281 216-310 (322)
69 4gp7_A Metallophosphoesterase; 99.9 1.2E-26 4.1E-31 214.5 3.1 146 74-259 1-163 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 4.2E-28 1.4E-32 253.6 -10.0 171 69-266 36-248 (413)
71 2v9p_A Replication protein E1; 99.9 2.3E-30 7.7E-35 260.6 -26.2 200 2-288 70-270 (305)
72 1ye8_A Protein THEP1, hypothet 99.9 5.2E-25 1.8E-29 205.2 4.0 144 84-275 2-159 (178)
73 1znw_A Guanylate kinase, GMP k 99.9 1.3E-27 4.4E-32 227.3 -17.3 180 68-269 8-202 (207)
74 3b9q_A Chloroplast SRP recepto 99.9 6.5E-25 2.2E-29 221.1 -1.6 172 72-273 90-284 (302)
75 3sop_A Neuronal-specific septi 99.9 3.2E-24 1.1E-28 212.8 -3.8 145 84-254 4-150 (270)
76 2og2_A Putative signal recogni 99.9 1.2E-23 3.9E-28 216.4 -0.1 171 73-273 148-341 (359)
77 2dpy_A FLII, flagellum-specifi 99.9 5.1E-25 1.7E-29 232.5 -10.7 189 51-282 131-342 (438)
78 2o5v_A DNA replication and rep 99.9 1.4E-21 4.7E-26 201.1 14.0 86 189-282 259-354 (359)
79 2pt7_A CAG-ALFA; ATPase, prote 99.9 3E-23 1E-27 211.6 -0.3 129 71-272 160-291 (330)
80 3qkt_A DNA double-strand break 99.9 9.8E-21 3.4E-25 193.5 17.4 77 191-269 245-327 (339)
81 1z6g_A Guanylate kinase; struc 99.8 5.9E-26 2E-30 218.0 -21.7 151 69-242 10-175 (218)
82 3pih_A Uvrabc system protein A 99.8 2.4E-21 8.2E-26 219.5 11.0 161 99-283 385-559 (916)
83 3aez_A Pantothenate kinase; tr 99.8 1.8E-24 6E-29 218.9 -14.7 123 79-227 87-209 (312)
84 4ad8_A DNA repair protein RECN 99.8 1E-20 3.5E-25 203.9 12.9 78 191-271 393-473 (517)
85 1cr0_A DNA primase/helicase; R 99.8 4.4E-22 1.5E-26 199.1 1.2 183 69-273 22-237 (296)
86 2o8b_B DNA mismatch repair pro 99.8 7.4E-22 2.5E-26 226.9 1.7 172 51-280 750-938 (1022)
87 1tf7_A KAIC; homohexamer, hexa 99.8 9E-21 3.1E-25 204.8 9.2 156 76-272 275-444 (525)
88 2jeo_A Uridine-cytidine kinase 99.8 5.4E-22 1.8E-26 193.4 -2.5 177 67-284 10-187 (245)
89 2obl_A ESCN; ATPase, hydrolase 99.8 7.6E-22 2.6E-26 202.3 -2.3 191 50-282 44-253 (347)
90 2r6f_A Excinuclease ABC subuni 99.8 1.9E-19 6.4E-24 203.2 16.5 135 141-283 450-599 (972)
91 1tf7_A KAIC; homohexamer, hexa 99.8 2.3E-23 8E-28 225.0 -15.3 166 68-270 24-209 (525)
92 3thx_A DNA mismatch repair pro 99.8 5.3E-20 1.8E-24 209.3 11.0 170 51-283 631-812 (934)
93 2ygr_A Uvrabc system protein A 99.8 2.7E-19 9.4E-24 202.5 14.1 133 140-284 466-617 (993)
94 2vf7_A UVRA2, excinuclease ABC 99.8 8.5E-20 2.9E-24 205.3 9.9 172 90-283 270-474 (842)
95 2ehv_A Hypothetical protein PH 99.8 3.8E-21 1.3E-25 186.0 -1.1 167 71-269 18-206 (251)
96 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.8E-19 9.5E-24 161.5 10.1 82 190-273 53-142 (148)
97 4a74_A DNA repair and recombin 99.8 1.3E-20 4.5E-25 179.9 0.6 154 77-272 20-201 (231)
98 2eyu_A Twitching motility prot 99.8 5.8E-20 2E-24 181.3 2.8 133 70-270 15-147 (261)
99 3thx_B DNA mismatch repair pro 99.8 9.4E-19 3.2E-23 198.6 9.6 145 68-265 659-805 (918)
100 1ewq_A DNA mismatch repair pro 99.7 1.6E-19 5.5E-24 201.9 2.6 146 68-277 565-717 (765)
101 2qnr_A Septin-2, protein NEDD5 99.7 2.5E-20 8.4E-25 187.6 -3.8 162 55-255 2-168 (301)
102 3asz_A Uridine kinase; cytidin 99.7 2E-21 6.8E-26 184.2 -12.3 145 79-254 3-161 (211)
103 1wb9_A DNA mismatch repair pro 99.7 4.2E-19 1.4E-23 199.5 2.1 158 68-279 594-753 (800)
104 1rj9_A FTSY, signal recognitio 99.7 3.3E-19 1.1E-23 179.6 -0.1 146 81-254 101-258 (304)
105 1pzn_A RAD51, DNA repair and r 99.7 1.8E-19 6.1E-24 185.0 -3.0 167 70-278 118-309 (349)
106 3szr_A Interferon-induced GTP- 99.7 6.2E-20 2.1E-24 201.4 -8.4 191 51-284 10-237 (608)
107 2w0m_A SSO2452; RECA, SSPF, un 99.7 2.9E-18 1E-22 163.4 2.2 171 69-271 9-192 (235)
108 2i3b_A HCR-ntpase, human cance 99.7 7.4E-20 2.5E-24 172.0 -9.8 154 82-276 1-168 (189)
109 1nlf_A Regulatory protein REPA 99.7 7.1E-17 2.4E-21 160.0 9.3 150 78-254 26-181 (279)
110 3jvv_A Twitching mobility prot 99.7 1.3E-17 4.4E-22 171.4 3.2 135 70-271 104-246 (356)
111 2qag_C Septin-7; cell cycle, c 99.7 1.4E-18 4.8E-23 182.0 -4.7 163 51-254 11-177 (418)
112 1pui_A ENGB, probable GTP-bind 99.6 1.1E-16 3.9E-21 150.4 5.4 175 52-246 4-202 (210)
113 3kta_B Chromosome segregation 99.6 1.7E-15 5.8E-20 140.2 11.0 79 191-272 61-145 (173)
114 1s96_A Guanylate kinase, GMP k 99.6 1.7E-17 5.7E-22 159.5 -3.4 150 74-286 8-162 (219)
115 2cvh_A DNA repair and recombin 99.6 1.1E-14 3.7E-19 137.8 13.9 155 69-271 6-185 (220)
116 2bdt_A BH3686; alpha-beta prot 99.6 4E-19 1.4E-23 165.5 -16.7 168 82-281 2-181 (189)
117 1lw7_A Transcriptional regulat 99.5 1.1E-18 3.8E-23 179.9 -19.0 167 71-269 157-342 (365)
118 1zp6_A Hypothetical protein AT 99.5 1.7E-17 5.9E-22 154.2 -9.3 151 78-251 5-158 (191)
119 2qag_B Septin-6, protein NEDD5 99.5 8E-17 2.7E-21 168.4 -5.6 184 52-253 17-218 (427)
120 2gza_A Type IV secretion syste 99.5 2.5E-15 8.5E-20 154.8 3.4 135 72-272 165-303 (361)
121 2ewv_A Twitching motility prot 99.5 1.8E-15 6.2E-20 156.4 1.9 130 71-269 127-257 (372)
122 1htw_A HI0065; nucleotide-bind 99.5 5.7E-17 2E-21 147.9 -9.6 79 68-151 19-97 (158)
123 1n0w_A DNA repair protein RAD5 99.5 1.7E-14 5.7E-19 138.6 7.0 157 72-271 13-209 (243)
124 2bbw_A Adenylate kinase 4, AK4 99.5 5.5E-17 1.9E-21 157.8 -11.1 152 81-244 26-200 (246)
125 2rcn_A Probable GTPase ENGC; Y 99.5 1.3E-14 4.4E-19 148.8 5.8 121 71-209 205-328 (358)
126 3auy_A DNA double-strand break 99.5 1.1E-13 3.6E-18 143.0 12.2 76 191-269 277-359 (371)
127 1nij_A Hypothetical protein YJ 99.5 4.7E-18 1.6E-22 172.2 -20.3 159 83-263 5-197 (318)
128 2f1r_A Molybdopterin-guanine d 99.5 2.9E-16 9.9E-21 145.1 -7.7 137 83-244 3-163 (171)
129 2yhs_A FTSY, cell division pro 99.4 5E-15 1.7E-19 157.0 -1.6 152 72-253 283-448 (503)
130 3e70_C DPA, signal recognition 99.4 1.4E-14 4.8E-19 147.2 0.7 140 80-253 127-278 (328)
131 3ec2_A DNA replication protein 99.4 2.2E-14 7.5E-19 132.4 1.5 114 76-257 32-146 (180)
132 1w1w_A Structural maintenance 99.4 3.2E-13 1.1E-17 142.0 10.5 75 193-269 332-410 (430)
133 1udx_A The GTP-binding protein 99.4 7.3E-15 2.5E-19 153.8 -3.4 160 72-265 147-319 (416)
134 1odf_A YGR205W, hypothetical 3 99.4 8E-15 2.7E-19 146.6 -2.9 132 80-229 29-169 (290)
135 2qm8_A GTPase/ATPase; G protei 99.4 8E-16 2.7E-20 157.1 -11.2 172 52-242 30-260 (337)
136 2kjq_A DNAA-related protein; s 99.4 1.7E-13 5.8E-18 123.5 5.3 97 70-255 29-126 (149)
137 2yv5_A YJEQ protein; hydrolase 99.4 3E-14 1E-18 143.2 -1.8 119 79-207 162-300 (302)
138 1p9r_A General secretion pathw 99.3 4.2E-16 1.4E-20 163.4 -18.4 134 70-218 157-315 (418)
139 1sxj_E Activator 1 40 kDa subu 99.3 8.2E-13 2.8E-17 134.3 6.3 134 85-256 39-176 (354)
140 2oap_1 GSPE-2, type II secreti 99.3 2.3E-15 7.8E-20 161.7 -13.9 177 69-263 247-458 (511)
141 3lda_A DNA repair protein RAD5 99.3 8.1E-12 2.8E-16 130.1 11.2 160 71-272 166-364 (400)
142 3c8u_A Fructokinase; YP_612366 99.3 1E-14 3.5E-19 138.2 -9.9 163 79-285 19-182 (208)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 4.6E-15 1.6E-19 154.0 -15.8 167 78-281 16-210 (392)
144 1u0l_A Probable GTPase ENGC; p 99.2 6.8E-13 2.3E-17 133.2 -2.4 105 78-197 165-294 (301)
145 1t9h_A YLOQ, probable GTPase E 99.2 4E-12 1.4E-16 127.8 0.4 116 78-202 169-303 (307)
146 1in4_A RUVB, holliday junction 99.1 1.9E-13 6.5E-18 139.0 -10.7 166 68-263 30-210 (334)
147 2x8a_A Nuclear valosin-contain 99.1 2.9E-14 1E-18 141.3 -17.9 140 69-237 33-190 (274)
148 1lvg_A Guanylate kinase, GMP k 99.1 1.3E-14 4.6E-19 136.7 -20.2 57 205-270 116-173 (198)
149 2dr3_A UPF0273 protein PH0284; 99.0 7.5E-10 2.6E-14 106.0 11.3 67 204-270 118-196 (247)
150 1sq5_A Pantothenate kinase; P- 99.0 1.4E-12 4.7E-17 131.3 -9.6 94 52-156 38-156 (308)
151 1vma_A Cell division protein F 99.0 9.7E-11 3.3E-15 117.8 3.6 113 75-241 97-212 (306)
152 2px0_A Flagellar biosynthesis 99.0 4.7E-10 1.6E-14 112.2 6.9 141 80-276 103-247 (296)
153 3euj_A Chromosome partition pr 99.0 1.7E-10 5.9E-15 122.4 3.3 51 69-123 17-67 (483)
154 2r6a_A DNAB helicase, replicat 99.0 1.3E-09 4.5E-14 115.3 9.8 174 69-273 190-401 (454)
155 1ls1_A Signal recognition part 98.9 1.3E-09 4.5E-14 108.9 8.9 118 73-240 91-209 (295)
156 2ius_A DNA translocase FTSK; n 98.9 4.4E-11 1.5E-15 127.8 -3.6 164 74-255 159-343 (512)
157 3k1j_A LON protease, ATP-depen 98.9 2.4E-11 8.4E-16 133.1 -6.5 160 68-239 46-227 (604)
158 2zr9_A Protein RECA, recombina 98.9 1.3E-09 4.5E-14 111.5 6.6 154 71-278 48-237 (349)
159 1iy2_A ATP-dependent metallopr 98.8 1.3E-12 4.3E-17 129.2 -17.6 122 69-215 62-190 (278)
160 3tr0_A Guanylate kinase, GMP k 98.8 1.7E-10 5.8E-15 107.8 -2.6 66 76-148 1-71 (205)
161 1oix_A RAS-related protein RAB 98.8 6.5E-10 2.2E-14 103.1 1.3 38 201-240 152-189 (191)
162 1ixz_A ATP-dependent metallopr 98.8 2E-12 6.9E-17 125.7 -17.3 122 69-215 38-166 (254)
163 1qhl_A Protein (cell division 98.7 6.9E-10 2.4E-14 106.8 -3.6 58 50-123 8-65 (227)
164 2qtf_A Protein HFLX, GTP-bindi 98.6 3.6E-09 1.2E-13 108.9 -0.3 149 84-242 181-353 (364)
165 3lnc_A Guanylate kinase, GMP k 98.6 7.9E-09 2.7E-13 98.8 1.6 40 69-108 14-54 (231)
166 3hr8_A Protein RECA; alpha and 98.6 1.3E-08 4.3E-13 104.3 2.4 38 71-108 48-87 (356)
167 2f9l_A RAB11B, member RAS onco 98.5 2.5E-08 8.6E-13 92.6 2.8 37 203-241 130-166 (199)
168 2ce7_A Cell division protein F 98.5 1.1E-07 3.6E-12 101.1 7.5 58 197-254 93-164 (476)
169 4eun_A Thermoresistant glucoki 98.4 4.3E-09 1.5E-13 98.5 -4.9 45 72-123 19-63 (200)
170 2xau_A PRE-mRNA-splicing facto 98.4 2.4E-07 8.3E-12 104.1 6.9 72 193-265 189-262 (773)
171 4a1f_A DNAB helicase, replicat 98.4 1.6E-07 5.4E-12 95.5 4.4 130 69-252 33-164 (338)
172 3nwj_A ATSK2; P loop, shikimat 98.4 2.5E-08 8.5E-13 97.3 -1.8 53 51-107 17-73 (250)
173 2e87_A Hypothetical protein PH 98.3 5.1E-07 1.8E-11 92.3 6.3 61 193-255 230-293 (357)
174 3kta_A Chromosome segregation 98.3 4.8E-07 1.6E-11 82.7 4.9 39 70-109 13-53 (182)
175 3uie_A Adenylyl-sulfate kinase 98.2 3.7E-08 1.3E-12 92.1 -3.6 52 68-123 11-64 (200)
176 1zu4_A FTSY; GTPase, signal re 98.2 1.7E-07 5.7E-12 94.7 0.4 76 72-150 95-185 (320)
177 3a00_A Guanylate kinase, GMP k 98.2 2.7E-07 9.1E-12 85.3 1.3 27 82-108 1-27 (186)
178 2dhr_A FTSH; AAA+ protein, hex 98.2 5.7E-09 1.9E-13 111.5 -11.5 128 69-223 53-187 (499)
179 3t34_A Dynamin-related protein 98.2 3.6E-06 1.2E-10 86.0 9.5 57 195-252 155-212 (360)
180 2j41_A Guanylate kinase; GMP, 98.2 9.4E-07 3.2E-11 82.1 4.3 32 77-108 1-32 (207)
181 3vaa_A Shikimate kinase, SK; s 98.2 7.4E-07 2.5E-11 83.1 3.4 40 67-106 10-49 (199)
182 1jjv_A Dephospho-COA kinase; P 98.2 1.1E-06 3.6E-11 82.2 4.2 70 196-269 61-131 (206)
183 1fnn_A CDC6P, cell division co 98.1 6E-06 2.1E-10 84.0 10.0 43 211-254 124-169 (389)
184 1kgd_A CASK, peripheral plasma 98.1 1.6E-06 5.4E-11 79.6 3.2 36 81-118 4-39 (180)
185 2z4s_A Chromosomal replication 98.0 2E-06 6.9E-11 90.4 4.1 70 211-280 193-264 (440)
186 3b9p_A CG5977-PA, isoform A; A 98.0 4E-05 1.4E-09 75.4 12.5 73 196-268 97-186 (297)
187 3bh0_A DNAB-like replicative h 98.0 5.3E-06 1.8E-10 83.3 6.0 133 69-253 55-190 (315)
188 4e22_A Cytidylate kinase; P-lo 98.0 5.6E-07 1.9E-11 87.5 -1.3 60 71-136 19-95 (252)
189 2vp4_A Deoxynucleoside kinase; 98.0 1.5E-06 5.2E-11 83.0 1.5 38 78-122 16-53 (230)
190 3tau_A Guanylate kinase, GMP k 97.9 4.5E-06 1.6E-10 78.4 3.9 29 80-108 6-34 (208)
191 1v5w_A DMC1, meiotic recombina 97.9 5.8E-05 2E-09 76.6 12.3 139 77-254 117-274 (343)
192 2z43_A DNA repair and recombin 97.9 5.8E-05 2E-09 75.9 11.9 143 72-253 96-257 (324)
193 1ega_A Protein (GTP-binding pr 97.9 1.3E-05 4.5E-10 79.9 6.6 64 195-266 101-170 (301)
194 1svm_A Large T antigen; AAA+ f 97.8 2.2E-06 7.5E-11 88.4 -0.1 44 69-118 156-199 (377)
195 1rz3_A Hypothetical protein rb 97.8 2.5E-06 8.7E-11 79.7 0.3 41 79-122 19-59 (201)
196 2dy1_A Elongation factor G; tr 97.8 6E-06 2E-10 91.3 3.1 129 76-254 3-136 (665)
197 2qt1_A Nicotinamide riboside k 97.8 1.1E-05 3.7E-10 75.4 3.8 29 78-106 17-45 (207)
198 1knq_A Gluconate kinase; ALFA/ 97.8 6.3E-06 2.1E-10 74.7 2.0 35 80-121 6-40 (175)
199 3ney_A 55 kDa erythrocyte memb 97.8 6.5E-06 2.2E-10 77.2 2.0 29 79-107 16-44 (197)
200 3kl4_A SRP54, signal recogniti 97.8 4.7E-05 1.6E-09 79.7 8.6 125 81-253 96-223 (433)
201 3tqc_A Pantothenate kinase; bi 97.8 2.3E-06 8E-11 86.3 -1.6 41 68-108 72-118 (321)
202 3cr8_A Sulfate adenylyltranfer 97.7 6.2E-06 2.1E-10 89.1 1.1 42 78-122 365-408 (552)
203 1kag_A SKI, shikimate kinase I 97.7 1.4E-05 4.7E-10 72.1 2.6 27 81-107 3-29 (173)
204 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 2.7E-05 9.2E-10 69.5 3.8 30 73-103 15-44 (149)
205 2qby_A CDC6 homolog 1, cell di 97.6 1.2E-05 4.2E-10 81.2 1.3 28 80-107 43-70 (386)
206 3cf0_A Transitional endoplasmi 97.6 8.8E-05 3E-09 73.6 7.2 29 78-106 45-73 (301)
207 1w1w_A Structural maintenance 97.6 2.9E-05 1E-09 81.1 3.3 33 77-109 21-53 (430)
208 3llm_A ATP-dependent RNA helic 97.5 2.1E-05 7.2E-10 75.1 1.8 153 79-263 73-228 (235)
209 3lxx_A GTPase IMAP family memb 97.5 0.0012 4E-08 62.8 12.9 43 211-253 111-155 (239)
210 2p67_A LAO/AO transport system 97.5 8.3E-06 2.8E-10 82.8 -2.5 49 69-120 43-91 (341)
211 1ypw_A Transitional endoplasmi 97.4 9.9E-05 3.4E-09 83.3 5.9 31 78-108 234-264 (806)
212 2pez_A Bifunctional 3'-phospho 97.4 3E-05 1E-09 70.5 1.1 38 80-121 3-42 (179)
213 1l8q_A Chromosomal replication 97.4 0.00026 9E-09 70.6 7.5 46 210-255 96-142 (324)
214 2w58_A DNAI, primosome compone 97.4 0.00017 5.9E-09 66.6 5.7 24 83-106 55-78 (202)
215 4eaq_A DTMP kinase, thymidylat 97.4 5.8E-05 2E-09 72.2 2.3 38 71-108 12-52 (229)
216 3ice_A Transcription terminati 97.4 1.6E-05 5.5E-10 81.7 -1.7 52 51-106 133-198 (422)
217 2www_A Methylmalonic aciduria 97.3 4.8E-05 1.7E-09 77.5 1.1 40 80-122 72-111 (349)
218 3qks_A DNA double-strand break 97.3 0.00013 4.4E-09 68.4 3.8 31 73-104 15-45 (203)
219 2gj8_A MNME, tRNA modification 97.3 0.00033 1.1E-08 63.1 6.1 27 80-106 2-28 (172)
220 1u94_A RECA protein, recombina 97.3 0.0027 9.3E-08 64.7 13.5 35 70-104 49-85 (356)
221 3m6a_A ATP-dependent protease 97.2 4.1E-05 1.4E-09 82.6 -0.2 48 69-120 96-143 (543)
222 1mky_A Probable GTP-binding pr 97.2 0.00027 9.3E-09 74.0 6.1 39 84-122 182-229 (439)
223 2q6t_A DNAB replication FORK h 97.2 0.00092 3.2E-08 70.1 9.5 131 69-252 187-318 (444)
224 1cke_A CK, MSSA, protein (cyti 97.2 0.00016 5.6E-09 67.9 3.3 37 82-118 5-41 (227)
225 1m7g_A Adenylylsulfate kinase; 97.2 8.4E-05 2.9E-09 69.6 1.0 40 79-121 22-63 (211)
226 1m2o_B GTP-binding protein SAR 97.1 0.0003 1E-08 64.4 4.6 35 70-105 12-46 (190)
227 3auy_A DNA double-strand break 97.1 0.00039 1.3E-08 71.1 5.8 31 72-103 16-46 (371)
228 3h4m_A Proteasome-activating n 97.1 0.00078 2.7E-08 65.6 7.7 27 80-106 49-75 (285)
229 2qor_A Guanylate kinase; phosp 97.1 0.00021 7.2E-09 66.5 3.0 28 79-106 9-36 (204)
230 2i1q_A DNA repair and recombin 97.1 0.0019 6.4E-08 64.5 10.1 34 71-104 86-120 (322)
231 2b8t_A Thymidine kinase; deoxy 97.1 0.00043 1.5E-08 66.1 5.1 53 212-269 89-150 (223)
232 1y63_A LMAJ004144AAA protein; 97.1 0.00023 7.8E-09 65.2 2.9 32 74-105 2-33 (184)
233 1np6_A Molybdopterin-guanine d 97.1 0.00023 7.8E-09 65.3 2.8 39 83-121 7-45 (174)
234 3bos_A Putative DNA replicatio 97.1 0.00052 1.8E-08 64.3 5.4 44 211-254 103-148 (242)
235 3bgw_A DNAB-like replicative h 97.0 0.0017 5.7E-08 68.2 9.2 36 69-104 184-219 (444)
236 1f6b_A SAR1; gtpases, N-termin 97.0 0.00014 4.7E-09 67.2 0.7 37 68-105 12-48 (198)
237 3d8b_A Fidgetin-like protein 1 97.0 0.0041 1.4E-07 63.1 11.6 27 80-106 115-141 (357)
238 2if2_A Dephospho-COA kinase; a 96.9 0.00034 1.2E-08 64.7 2.9 21 84-104 3-23 (204)
239 2ffh_A Protein (FFH); SRP54, s 96.9 0.0002 6.9E-09 74.8 0.9 45 73-122 91-135 (425)
240 2qag_A Septin-2, protein NEDD5 96.9 8.5E-05 2.9E-09 76.0 -2.0 47 51-108 17-63 (361)
241 2yvu_A Probable adenylyl-sulfa 96.9 0.00027 9.3E-09 64.5 1.6 30 79-108 10-39 (186)
242 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.013 4.4E-07 58.6 13.5 27 80-106 43-69 (322)
243 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00051 1.8E-08 71.0 3.0 42 77-121 17-69 (396)
244 2wji_A Ferrous iron transport 96.8 0.0007 2.4E-08 60.2 3.4 23 84-106 5-27 (165)
245 2wjg_A FEOB, ferrous iron tran 96.8 0.00093 3.2E-08 60.3 4.2 22 84-105 9-30 (188)
246 2p5t_B PEZT; postsegregational 96.7 0.00032 1.1E-08 67.7 1.1 45 72-122 23-67 (253)
247 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0059 2E-07 58.2 10.0 27 80-106 37-63 (262)
248 2v1u_A Cell division control p 96.7 0.00097 3.3E-08 67.2 4.5 27 80-106 42-68 (387)
249 3cm0_A Adenylate kinase; ATP-b 96.7 0.00077 2.6E-08 61.1 3.3 26 80-105 2-27 (186)
250 3t61_A Gluconokinase; PSI-biol 96.7 0.00063 2.1E-08 62.9 2.7 25 82-106 18-42 (202)
251 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00017 5.9E-09 73.4 -1.3 38 70-107 10-49 (359)
252 1sxj_C Activator 1 40 kDa subu 96.7 0.00018 6.3E-09 72.4 -1.4 41 68-108 30-72 (340)
253 1j8m_F SRP54, signal recogniti 96.6 0.00016 5.4E-09 72.0 -2.0 45 73-121 89-134 (297)
254 3kb2_A SPBC2 prophage-derived 96.6 0.001 3.5E-08 59.2 3.3 23 84-106 3-25 (173)
255 1q57_A DNA primase/helicase; d 96.6 0.022 7.4E-07 60.5 14.1 35 70-104 230-264 (503)
256 1qhx_A CPT, protein (chloramph 96.6 0.0012 4.2E-08 59.3 3.6 26 82-107 3-28 (178)
257 2zej_A Dardarin, leucine-rich 96.5 0.0011 3.8E-08 60.0 3.0 23 84-106 4-26 (184)
258 1q3t_A Cytidylate kinase; nucl 96.5 0.0013 4.4E-08 62.6 3.3 29 78-106 12-40 (236)
259 1lv7_A FTSH; alpha/beta domain 96.5 0.00092 3.1E-08 64.2 2.1 35 71-107 36-70 (257)
260 3io5_A Recombination and repai 96.4 0.0078 2.7E-07 60.3 8.8 57 197-253 92-171 (333)
261 1kht_A Adenylate kinase; phosp 96.4 0.0016 5.4E-08 59.0 3.5 25 82-106 3-27 (192)
262 1xp8_A RECA protein, recombina 96.4 0.018 6.3E-07 58.7 11.4 34 71-104 61-96 (366)
263 2r8r_A Sensor protein; KDPD, P 96.3 0.0021 7.1E-08 61.3 3.8 75 207-288 79-175 (228)
264 2rhm_A Putative kinase; P-loop 96.3 0.0016 5.5E-08 59.2 2.9 26 80-105 3-28 (193)
265 3r20_A Cytidylate kinase; stru 96.3 0.0019 6.4E-08 62.0 3.3 25 82-106 9-33 (233)
266 3lw7_A Adenylate kinase relate 96.3 0.0019 6.6E-08 57.1 3.2 19 84-102 3-21 (179)
267 1vht_A Dephospho-COA kinase; s 96.2 0.0023 7.9E-08 59.8 3.5 24 81-104 3-26 (218)
268 1ex7_A Guanylate kinase; subst 96.2 0.0022 7.5E-08 59.3 3.1 23 84-106 3-25 (186)
269 2v54_A DTMP kinase, thymidylat 96.2 0.0026 9E-08 58.4 3.7 26 81-106 3-28 (204)
270 2ze6_A Isopentenyl transferase 96.2 0.0023 7.8E-08 61.9 3.3 24 83-106 2-25 (253)
271 2jaq_A Deoxyguanosine kinase; 96.2 0.0025 8.5E-08 58.3 3.3 23 84-106 2-24 (205)
272 2plr_A DTMP kinase, probable t 96.2 0.0028 9.7E-08 58.3 3.7 28 81-108 3-30 (213)
273 3trf_A Shikimate kinase, SK; a 96.2 0.0027 9.2E-08 57.5 3.4 26 81-106 4-29 (185)
274 3iij_A Coilin-interacting nucl 96.1 0.0024 8.4E-08 57.6 3.0 25 81-105 10-34 (180)
275 1ly1_A Polynucleotide kinase; 96.1 0.0032 1.1E-07 56.4 3.5 22 83-104 3-24 (181)
276 2wwf_A Thymidilate kinase, put 96.1 0.0031 1.1E-07 58.2 3.4 27 80-106 8-34 (212)
277 1gtv_A TMK, thymidylate kinase 96.0 0.0016 5.3E-08 60.4 1.2 25 84-108 2-26 (214)
278 1xjc_A MOBB protein homolog; s 96.0 0.0024 8.3E-08 58.1 2.4 25 83-107 5-29 (169)
279 2c95_A Adenylate kinase 1; tra 96.0 0.0032 1.1E-07 57.3 3.1 26 80-105 7-32 (196)
280 3cmw_A Protein RECA, recombina 96.0 0.057 2E-06 65.0 14.4 28 78-105 728-755 (1706)
281 3k53_A Ferrous iron transport 96.0 0.0029 9.9E-08 61.5 2.8 23 84-106 5-27 (271)
282 1gvn_B Zeta; postsegregational 96.0 0.0032 1.1E-07 62.1 3.1 36 80-120 31-66 (287)
283 1uf9_A TT1252 protein; P-loop, 96.0 0.0036 1.2E-07 57.3 3.3 24 82-105 8-31 (203)
284 1via_A Shikimate kinase; struc 96.0 0.0034 1.2E-07 56.4 3.1 23 84-106 6-28 (175)
285 1nn5_A Similar to deoxythymidy 96.0 0.0036 1.2E-07 57.9 3.3 28 79-106 6-33 (215)
286 1tev_A UMP-CMP kinase; ploop, 95.9 0.0043 1.5E-07 56.2 3.6 24 82-105 3-26 (196)
287 1nks_A Adenylate kinase; therm 95.9 0.0037 1.3E-07 56.5 3.0 23 84-106 3-25 (194)
288 2ged_A SR-beta, signal recogni 95.8 0.0043 1.5E-07 56.1 2.9 24 83-106 49-72 (193)
289 2nzj_A GTP-binding protein REM 95.7 0.005 1.7E-07 54.3 3.2 23 84-106 6-28 (175)
290 1z2a_A RAS-related protein RAB 95.7 0.0045 1.5E-07 54.2 2.9 23 84-106 7-29 (168)
291 1ko7_A HPR kinase/phosphatase; 95.7 0.0077 2.6E-07 60.2 4.8 36 69-105 132-167 (314)
292 2bwj_A Adenylate kinase 5; pho 95.7 0.0041 1.4E-07 56.7 2.6 26 80-105 10-35 (199)
293 1xx6_A Thymidine kinase; NESG, 95.7 0.011 3.9E-07 54.6 5.7 53 212-269 81-142 (191)
294 1jal_A YCHF protein; nucleotid 95.7 0.007 2.4E-07 61.8 4.6 39 82-120 2-48 (363)
295 2orv_A Thymidine kinase; TP4A 95.7 0.047 1.6E-06 52.1 9.9 53 211-269 89-150 (234)
296 2erx_A GTP-binding protein DI- 95.7 0.0052 1.8E-07 53.9 3.2 22 84-105 5-26 (172)
297 1aky_A Adenylate kinase; ATP:A 95.7 0.0058 2E-07 57.1 3.6 27 80-106 2-28 (220)
298 2z0h_A DTMP kinase, thymidylat 95.7 0.0054 1.8E-07 55.8 3.3 23 84-106 2-24 (197)
299 3q72_A GTP-binding protein RAD 95.7 0.0042 1.4E-07 54.5 2.4 23 84-106 4-26 (166)
300 3ihw_A Centg3; RAS, centaurin, 95.7 0.011 3.7E-07 53.6 5.3 22 84-105 22-43 (184)
301 3vfd_A Spastin; ATPase, microt 95.7 0.084 2.9E-06 53.8 12.6 26 81-106 147-172 (389)
302 1kao_A RAP2A; GTP-binding prot 95.7 0.0051 1.7E-07 53.5 2.9 23 84-106 5-27 (167)
303 2dyk_A GTP-binding protein; GT 95.6 0.0054 1.9E-07 53.3 2.9 23 84-106 3-25 (161)
304 3q85_A GTP-binding protein REM 95.6 0.0058 2E-07 53.7 3.1 23 84-106 4-26 (169)
305 1u8z_A RAS-related protein RAL 95.6 0.0053 1.8E-07 53.5 2.9 23 84-106 6-28 (168)
306 3ake_A Cytidylate kinase; CMP 95.6 0.0056 1.9E-07 56.2 3.1 23 84-106 4-26 (208)
307 2vli_A Antibiotic resistance p 95.6 0.0044 1.5E-07 55.8 2.3 26 81-106 4-29 (183)
308 2ce2_X GTPase HRAS; signaling 95.6 0.005 1.7E-07 53.5 2.6 23 84-106 5-27 (166)
309 1z0j_A RAB-22, RAS-related pro 95.6 0.0058 2E-07 53.6 2.9 23 84-106 8-30 (170)
310 3tw8_B RAS-related protein RAB 95.6 0.0055 1.9E-07 54.3 2.8 23 84-106 11-33 (181)
311 3b1v_A Ferrous iron uptake tra 95.6 0.0088 3E-07 58.5 4.4 23 84-106 5-27 (272)
312 1z08_A RAS-related protein RAB 95.6 0.0059 2E-07 53.6 2.9 23 84-106 8-30 (170)
313 1ek0_A Protein (GTP-binding pr 95.5 0.0059 2E-07 53.4 2.9 23 84-106 5-27 (170)
314 1zd8_A GTP:AMP phosphotransfer 95.5 0.0063 2.2E-07 57.2 3.2 26 80-105 5-30 (227)
315 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.0061 2.1E-07 54.0 2.9 23 84-106 9-31 (177)
316 1c1y_A RAS-related protein RAP 95.5 0.0061 2.1E-07 53.2 2.9 22 84-105 5-26 (167)
317 1g16_A RAS-related protein SEC 95.5 0.0055 1.9E-07 53.7 2.6 23 84-106 5-27 (170)
318 1ky3_A GTP-binding protein YPT 95.5 0.0062 2.1E-07 54.0 2.9 23 84-106 10-32 (182)
319 2cdn_A Adenylate kinase; phosp 95.5 0.0078 2.7E-07 55.3 3.6 25 81-105 19-43 (201)
320 3cmw_A Protein RECA, recombina 95.5 0.076 2.6E-06 64.0 12.8 150 70-273 369-554 (1706)
321 3fb4_A Adenylate kinase; psych 95.5 0.007 2.4E-07 56.2 3.3 22 84-105 2-23 (216)
322 1fzq_A ADP-ribosylation factor 95.5 0.0054 1.9E-07 55.3 2.4 22 84-105 18-39 (181)
323 3lxw_A GTPase IMAP family memb 95.5 0.0065 2.2E-07 58.3 3.2 24 84-107 23-46 (247)
324 2lkc_A Translation initiation 95.5 0.0087 3E-07 53.0 3.7 24 82-105 8-31 (178)
325 1svi_A GTP-binding protein YSX 95.5 0.0059 2E-07 55.2 2.6 22 84-105 25-46 (195)
326 2pbr_A DTMP kinase, thymidylat 95.5 0.0074 2.5E-07 54.6 3.3 23 84-106 2-24 (195)
327 2fn4_A P23, RAS-related protei 95.4 0.0062 2.1E-07 53.9 2.6 22 84-105 11-32 (181)
328 2j9r_A Thymidine kinase; TK1, 95.4 0.037 1.3E-06 52.1 8.0 53 212-269 101-162 (214)
329 3pqc_A Probable GTP-binding pr 95.4 0.0064 2.2E-07 54.7 2.6 23 84-106 25-47 (195)
330 3clv_A RAB5 protein, putative; 95.4 0.0071 2.4E-07 54.5 2.9 23 84-106 9-31 (208)
331 1r2q_A RAS-related protein RAB 95.4 0.0072 2.5E-07 52.8 2.9 22 84-105 8-29 (170)
332 1ukz_A Uridylate kinase; trans 95.4 0.0085 2.9E-07 55.0 3.4 24 82-105 15-38 (203)
333 4ag6_A VIRB4 ATPase, type IV s 95.4 0.0046 1.6E-07 63.4 1.8 44 212-255 262-308 (392)
334 4dsu_A GTPase KRAS, isoform 2B 95.4 0.0073 2.5E-07 54.0 2.9 23 84-106 6-28 (189)
335 1e6c_A Shikimate kinase; phosp 95.4 0.0071 2.4E-07 53.8 2.8 23 83-105 3-25 (173)
336 1zuh_A Shikimate kinase; alpha 95.4 0.0088 3E-07 53.2 3.4 23 83-105 8-30 (168)
337 2cxx_A Probable GTP-binding pr 95.4 0.0068 2.3E-07 54.4 2.6 22 85-106 4-25 (190)
338 3dl0_A Adenylate kinase; phosp 95.4 0.0083 2.8E-07 55.8 3.3 23 84-106 2-24 (216)
339 2hxs_A RAB-26, RAS-related pro 95.4 0.0083 2.8E-07 53.1 3.2 23 84-106 8-30 (178)
340 1zak_A Adenylate kinase; ATP:A 95.3 0.007 2.4E-07 56.6 2.7 25 81-105 4-28 (222)
341 1upt_A ARL1, ADP-ribosylation 95.3 0.0077 2.6E-07 52.9 2.9 22 84-105 9-30 (171)
342 1qf9_A UMP/CMP kinase, protein 95.3 0.0087 3E-07 54.0 3.3 24 82-105 6-29 (194)
343 3bc1_A RAS-related protein RAB 95.3 0.0076 2.6E-07 54.0 2.9 22 84-105 13-34 (195)
344 2oil_A CATX-8, RAS-related pro 95.3 0.0077 2.6E-07 54.5 2.9 23 84-106 27-49 (193)
345 2pt5_A Shikimate kinase, SK; a 95.3 0.0094 3.2E-07 52.8 3.3 22 84-105 2-23 (168)
346 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.0099 3.4E-07 57.4 3.7 25 81-105 3-27 (260)
347 1r8s_A ADP-ribosylation factor 95.3 0.0082 2.8E-07 52.4 2.9 21 85-105 3-23 (164)
348 2iyv_A Shikimate kinase, SK; t 95.2 0.0077 2.6E-07 54.4 2.6 23 83-105 3-25 (184)
349 3t1o_A Gliding protein MGLA; G 95.2 0.0091 3.1E-07 53.7 3.1 25 84-108 16-40 (198)
350 3tlx_A Adenylate kinase 2; str 95.2 0.01 3.6E-07 56.7 3.6 25 81-105 28-52 (243)
351 1moz_A ARL1, ADP-ribosylation 95.2 0.0054 1.9E-07 54.7 1.5 22 83-104 19-40 (183)
352 2g6b_A RAS-related protein RAB 95.2 0.0088 3E-07 53.1 2.9 23 84-106 12-34 (180)
353 2y8e_A RAB-protein 6, GH09086P 95.2 0.008 2.7E-07 53.1 2.6 22 84-105 16-37 (179)
354 1wf3_A GTP-binding protein; GT 95.2 0.0097 3.3E-07 59.0 3.4 23 84-106 9-31 (301)
355 1z0f_A RAB14, member RAS oncog 95.2 0.0091 3.1E-07 52.8 2.9 23 84-106 17-39 (179)
356 2a9k_A RAS-related protein RAL 95.2 0.0091 3.1E-07 53.2 2.9 23 84-106 20-42 (187)
357 3dm5_A SRP54, signal recogniti 95.2 0.16 5.5E-06 53.0 12.7 27 81-107 99-125 (443)
358 3con_A GTPase NRAS; structural 95.1 0.0095 3.2E-07 53.6 2.9 23 84-106 23-45 (190)
359 2efe_B Small GTP-binding prote 95.1 0.0097 3.3E-07 52.9 2.9 23 84-106 14-36 (181)
360 3t5d_A Septin-7; GTP-binding p 95.1 0.0081 2.8E-07 58.4 2.5 23 84-106 10-32 (274)
361 3iby_A Ferrous iron transport 95.1 0.0095 3.2E-07 57.6 2.8 23 84-106 3-25 (256)
362 3iev_A GTP-binding protein ERA 95.1 0.011 3.8E-07 58.7 3.4 23 84-106 12-34 (308)
363 2bov_A RAla, RAS-related prote 95.1 0.01 3.5E-07 54.0 2.9 23 84-106 16-38 (206)
364 1nrj_B SR-beta, signal recogni 95.0 0.01 3.5E-07 54.9 2.9 23 84-106 14-36 (218)
365 1vg8_A RAS-related protein RAB 95.0 0.011 3.6E-07 54.0 2.9 23 84-106 10-32 (207)
366 2bme_A RAB4A, RAS-related prot 95.0 0.0096 3.3E-07 53.2 2.6 23 84-106 12-34 (186)
367 1ksh_A ARF-like protein 2; sma 95.0 0.011 3.7E-07 53.0 2.9 25 82-106 18-42 (186)
368 2gf9_A RAS-related protein RAB 95.0 0.011 3.7E-07 53.4 2.9 23 84-106 24-46 (189)
369 3cbq_A GTP-binding protein REM 95.0 0.0086 2.9E-07 54.8 2.2 22 84-105 25-46 (195)
370 1uj2_A Uridine-cytidine kinase 95.0 0.012 4E-07 56.4 3.3 24 83-106 23-46 (252)
371 2dby_A GTP-binding protein; GD 95.0 0.01 3.4E-07 60.7 2.9 21 85-105 4-24 (368)
372 2xtp_A GTPase IMAP family memb 95.0 0.011 3.6E-07 56.8 2.9 23 84-106 24-46 (260)
373 2grj_A Dephospho-COA kinase; T 95.0 0.013 4.3E-07 54.3 3.3 23 83-105 13-35 (192)
374 3tkl_A RAS-related protein RAB 95.0 0.011 3.8E-07 53.3 2.9 23 84-106 18-40 (196)
375 2gf0_A GTP-binding protein DI- 95.0 0.01 3.5E-07 53.6 2.6 22 84-105 10-31 (199)
376 3kkq_A RAS-related protein M-R 94.9 0.012 4E-07 52.6 2.9 23 84-106 20-42 (183)
377 3cmu_A Protein RECA, recombina 94.9 0.14 4.8E-06 62.6 12.8 150 70-273 369-554 (2050)
378 1m7b_A RND3/RHOE small GTP-bin 94.9 0.011 3.6E-07 53.2 2.6 23 84-106 9-31 (184)
379 1zbd_A Rabphilin-3A; G protein 94.9 0.013 4.4E-07 53.4 3.1 23 84-106 10-32 (203)
380 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.012 4.1E-07 52.4 2.9 22 84-105 7-28 (186)
381 2fg5_A RAB-22B, RAS-related pr 94.9 0.011 3.7E-07 53.7 2.6 23 84-106 25-47 (192)
382 4dhe_A Probable GTP-binding pr 94.9 0.0074 2.5E-07 56.0 1.5 23 84-106 31-53 (223)
383 1jbk_A CLPB protein; beta barr 94.9 0.015 5.2E-07 51.6 3.5 27 80-106 41-67 (195)
384 3a1s_A Iron(II) transport prot 94.9 0.013 4.4E-07 56.7 3.2 23 84-106 7-29 (258)
385 2xb4_A Adenylate kinase; ATP-b 94.9 0.014 4.7E-07 54.9 3.3 22 84-105 2-23 (223)
386 4fcw_A Chaperone protein CLPB; 94.9 0.014 4.6E-07 57.2 3.4 27 82-108 47-73 (311)
387 2cjw_A GTP-binding protein GEM 94.9 0.012 4.2E-07 53.6 2.9 22 84-105 8-29 (192)
388 1z06_A RAS-related protein RAB 94.9 0.013 4.3E-07 52.9 2.9 22 84-105 22-43 (189)
389 2il1_A RAB12; G-protein, GDP, 94.8 0.012 4.2E-07 53.4 2.7 22 84-105 28-49 (192)
390 3be4_A Adenylate kinase; malar 94.8 0.014 4.8E-07 54.5 3.2 26 81-106 4-29 (217)
391 3i8s_A Ferrous iron transport 94.8 0.012 4.3E-07 57.2 2.9 23 84-106 5-27 (274)
392 2qmh_A HPR kinase/phosphorylas 94.8 0.023 7.9E-07 53.1 4.6 36 69-105 22-57 (205)
393 3oes_A GTPase rhebl1; small GT 94.8 0.012 4.1E-07 53.8 2.6 23 84-106 26-48 (201)
394 2a5j_A RAS-related protein RAB 94.8 0.014 4.6E-07 52.9 2.9 23 84-106 23-45 (191)
395 1jwy_B Dynamin A GTPase domain 94.8 0.013 4.3E-07 57.8 2.8 23 84-106 26-48 (315)
396 3t5g_A GTP-binding protein RHE 94.8 0.012 4.3E-07 52.3 2.6 22 84-105 8-29 (181)
397 3bwd_D RAC-like GTP-binding pr 94.8 0.014 4.7E-07 51.9 2.9 22 84-105 10-31 (182)
398 3umf_A Adenylate kinase; rossm 94.7 0.017 5.7E-07 54.7 3.5 28 79-106 26-53 (217)
399 2wsm_A Hydrogenase expression/ 94.7 0.014 4.6E-07 54.2 2.8 24 83-106 31-54 (221)
400 2o52_A RAS-related protein RAB 94.7 0.014 4.7E-07 53.5 2.8 22 84-105 27-48 (200)
401 3dz8_A RAS-related protein RAB 94.7 0.013 4.3E-07 53.1 2.6 23 84-106 25-47 (191)
402 1zj6_A ADP-ribosylation factor 94.7 0.014 4.8E-07 52.5 2.8 22 84-105 18-39 (187)
403 2f6r_A COA synthase, bifunctio 94.7 0.014 4.8E-07 57.2 3.0 22 82-103 75-96 (281)
404 2qu8_A Putative nucleolar GTP- 94.7 0.014 4.8E-07 54.7 2.9 22 84-105 31-52 (228)
405 1zd9_A ADP-ribosylation factor 94.7 0.014 4.8E-07 52.7 2.9 22 84-105 24-45 (188)
406 1x3s_A RAS-related protein RAB 94.7 0.014 4.9E-07 52.4 2.9 23 84-106 17-39 (195)
407 2atv_A RERG, RAS-like estrogen 94.7 0.015 5E-07 52.9 2.9 22 84-105 30-51 (196)
408 2h57_A ADP-ribosylation factor 94.7 0.011 3.7E-07 53.4 2.0 23 84-106 23-45 (190)
409 2bcg_Y Protein YP2, GTP-bindin 94.7 0.013 4.4E-07 53.6 2.6 23 84-106 10-32 (206)
410 3cph_A RAS-related protein SEC 94.7 0.014 4.9E-07 53.4 2.9 23 84-106 22-44 (213)
411 3reg_A RHO-like small GTPase; 94.7 0.015 5E-07 52.7 2.9 23 84-106 25-47 (194)
412 4bas_A ADP-ribosylation factor 94.7 0.014 4.9E-07 52.7 2.8 23 84-106 19-41 (199)
413 4edh_A DTMP kinase, thymidylat 94.7 0.019 6.4E-07 54.1 3.7 27 81-107 5-31 (213)
414 1a7j_A Phosphoribulokinase; tr 94.7 0.0081 2.8E-07 59.3 1.2 25 81-105 4-28 (290)
415 2f7s_A C25KG, RAS-related prot 94.7 0.017 5.7E-07 53.4 3.2 23 84-106 27-49 (217)
416 2p5s_A RAS and EF-hand domain 94.7 0.015 5.1E-07 53.0 2.9 23 84-106 30-52 (199)
417 2h17_A ADP-ribosylation factor 94.6 0.013 4.5E-07 52.5 2.4 22 84-105 23-44 (181)
418 1e4v_A Adenylate kinase; trans 94.6 0.016 5.5E-07 53.9 3.0 22 84-105 2-23 (214)
419 2iwr_A Centaurin gamma 1; ANK 94.6 0.012 4.2E-07 52.2 2.1 22 84-105 9-30 (178)
420 2ew1_A RAS-related protein RAB 94.6 0.014 4.9E-07 53.8 2.6 23 84-106 28-50 (201)
421 3v9p_A DTMP kinase, thymidylat 94.6 0.015 5E-07 55.5 2.6 28 79-106 22-49 (227)
422 2q3h_A RAS homolog gene family 94.5 0.018 6.3E-07 52.3 3.1 23 84-106 22-44 (201)
423 1ak2_A Adenylate kinase isoenz 94.5 0.021 7.1E-07 54.0 3.6 25 81-105 15-39 (233)
424 1ltq_A Polynucleotide kinase; 94.5 0.019 6.6E-07 56.1 3.5 22 83-104 3-24 (301)
425 2fv8_A H6, RHO-related GTP-bin 94.5 0.015 5.3E-07 53.4 2.6 23 84-106 27-49 (207)
426 3llu_A RAS-related GTP-binding 94.5 0.018 6.2E-07 52.4 3.1 24 84-107 22-45 (196)
427 2aka_B Dynamin-1; fusion prote 94.5 0.015 5.1E-07 56.6 2.6 23 84-106 28-50 (299)
428 3c5c_A RAS-like protein 12; GD 94.5 0.018 6E-07 52.1 2.9 23 84-106 23-45 (187)
429 2j1l_A RHO-related GTP-binding 94.4 0.018 6.1E-07 53.4 2.9 22 84-105 36-57 (214)
430 2fu5_C RAS-related protein RAB 94.4 0.012 4.2E-07 52.5 1.6 22 84-105 10-31 (183)
431 3a8t_A Adenylate isopentenyltr 94.4 0.026 8.8E-07 57.0 4.1 26 81-106 39-64 (339)
432 1gwn_A RHO-related GTP-binding 94.4 0.017 5.7E-07 53.4 2.6 23 84-106 30-52 (205)
433 2fh5_B SR-beta, signal recogni 94.4 0.019 6.4E-07 52.9 2.9 23 84-106 9-31 (214)
434 2p65_A Hypothetical protein PF 94.3 0.019 6.6E-07 50.9 2.8 26 81-106 42-67 (187)
435 3lv8_A DTMP kinase, thymidylat 94.3 0.022 7.4E-07 54.6 3.2 27 81-107 26-52 (236)
436 2b6h_A ADP-ribosylation factor 94.3 0.018 6E-07 52.4 2.4 21 84-104 31-51 (192)
437 3def_A T7I23.11 protein; chlor 94.3 0.019 6.7E-07 55.3 2.9 23 84-106 38-60 (262)
438 2gco_A H9, RHO-related GTP-bin 94.3 0.019 6.4E-07 52.5 2.6 23 84-106 27-49 (201)
439 1sky_E F1-ATPase, F1-ATP synth 94.3 0.025 8.4E-07 59.6 3.7 35 71-106 141-175 (473)
440 3zvl_A Bifunctional polynucleo 94.2 0.022 7.6E-07 59.0 3.3 26 80-105 256-281 (416)
441 1h65_A Chloroplast outer envel 94.2 0.02 7E-07 55.3 2.8 23 84-106 41-63 (270)
442 2h92_A Cytidylate kinase; ross 94.2 0.019 6.3E-07 53.4 2.4 25 82-106 3-27 (219)
443 2g3y_A GTP-binding protein GEM 94.2 0.025 8.4E-07 52.9 3.2 22 84-105 39-60 (211)
444 3sr0_A Adenylate kinase; phosp 94.1 0.026 8.9E-07 52.8 3.3 23 84-106 2-24 (206)
445 2atx_A Small GTP binding prote 94.1 0.021 7.2E-07 51.5 2.6 22 84-105 20-41 (194)
446 2zts_A Putative uncharacterize 94.1 0.032 1.1E-06 52.4 4.0 60 210-269 133-206 (251)
447 1njg_A DNA polymerase III subu 94.1 0.028 9.5E-07 51.7 3.5 42 211-254 125-166 (250)
448 4tmk_A Protein (thymidylate ki 94.1 0.026 8.9E-07 53.1 3.3 27 81-107 2-28 (213)
449 3tmk_A Thymidylate kinase; pho 94.1 0.026 8.9E-07 53.3 3.3 29 80-108 3-31 (216)
450 3cnl_A YLQF, putative uncharac 94.1 0.027 9.3E-07 54.6 3.5 25 83-107 100-124 (262)
451 3d3q_A TRNA delta(2)-isopenten 94.1 0.025 8.6E-07 57.1 3.3 24 83-106 8-31 (340)
452 2ocp_A DGK, deoxyguanosine kin 94.1 0.028 9.4E-07 53.3 3.4 25 82-106 2-26 (241)
453 4djt_A GTP-binding nuclear pro 94.0 0.012 4E-07 54.5 0.6 22 84-105 13-34 (218)
454 3ld9_A DTMP kinase, thymidylat 94.0 0.032 1.1E-06 53.0 3.6 27 80-106 19-45 (223)
455 3exa_A TRNA delta(2)-isopenten 94.0 0.031 1.1E-06 55.8 3.7 25 82-106 3-27 (322)
456 3cpj_B GTP-binding protein YPT 93.9 0.026 9E-07 52.5 2.9 23 84-106 15-37 (223)
457 3tqf_A HPR(Ser) kinase; transf 93.9 0.047 1.6E-06 49.9 4.4 35 69-104 4-38 (181)
458 2yc2_C IFT27, small RAB-relate 93.9 0.012 4.2E-07 53.5 0.5 22 84-105 22-43 (208)
459 1p5z_B DCK, deoxycytidine kina 93.9 0.02 6.7E-07 55.2 2.0 27 80-106 22-48 (263)
460 3euj_A Chromosome partition pr 93.9 0.087 3E-06 55.7 7.1 71 192-269 377-464 (483)
461 2hup_A RAS-related protein RAB 93.9 0.025 8.5E-07 51.8 2.6 22 84-105 31-52 (201)
462 2hf9_A Probable hydrogenase ni 93.9 0.026 9E-07 52.4 2.8 23 83-105 39-61 (226)
463 2x77_A ADP-ribosylation factor 93.9 0.018 6E-07 51.9 1.5 21 84-104 24-44 (189)
464 4dcu_A GTP-binding protein ENG 93.7 0.026 8.9E-07 59.1 2.7 22 84-105 25-46 (456)
465 4gzl_A RAS-related C3 botulinu 93.7 0.028 9.5E-07 51.6 2.6 22 84-105 32-53 (204)
466 3crm_A TRNA delta(2)-isopenten 93.6 0.035 1.2E-06 55.7 3.3 24 83-106 6-29 (323)
467 3q3j_B RHO-related GTP-binding 93.6 0.032 1.1E-06 51.8 2.9 22 84-105 29-50 (214)
468 2j0v_A RAC-like GTP-binding pr 93.6 0.03 1E-06 51.4 2.6 22 84-105 11-32 (212)
469 2orw_A Thymidine kinase; TMTK, 93.2 0.048 1.6E-06 49.9 3.3 53 212-269 76-137 (184)
470 3foz_A TRNA delta(2)-isopenten 93.2 0.052 1.8E-06 54.1 3.7 25 82-106 10-34 (316)
471 1ypw_A Transitional endoplasmi 93.1 0.014 4.8E-07 65.7 -0.6 33 75-107 504-536 (806)
472 3n70_A Transport activator; si 93.1 0.051 1.7E-06 47.3 3.1 42 212-255 76-117 (145)
473 2chg_A Replication factor C sm 93.0 0.049 1.7E-06 49.5 3.1 41 212-254 102-142 (226)
474 1sxj_D Activator 1 41 kDa subu 93.0 0.042 1.4E-06 54.5 2.9 42 212-255 133-174 (353)
475 3eph_A TRNA isopentenyltransfe 93.0 0.051 1.7E-06 56.1 3.4 25 82-106 2-26 (409)
476 1puj_A YLQF, conserved hypothe 92.9 0.054 1.9E-06 53.1 3.4 24 83-106 121-144 (282)
477 2vhj_A Ntpase P4, P4; non- hyd 92.8 0.064 2.2E-06 53.8 3.8 28 77-104 118-145 (331)
478 3syl_A Protein CBBX; photosynt 92.8 0.055 1.9E-06 52.8 3.3 27 80-106 65-91 (309)
479 3gmt_A Adenylate kinase; ssgci 92.8 0.053 1.8E-06 51.7 3.1 23 84-106 10-32 (230)
480 1wxq_A GTP-binding protein; st 92.8 0.047 1.6E-06 56.3 2.9 22 85-106 3-24 (397)
481 2r62_A Cell division protease 92.8 0.025 8.6E-07 54.2 0.8 22 85-106 47-68 (268)
482 3th5_A RAS-related C3 botulinu 91.9 0.02 7E-07 52.2 0.0 21 84-104 32-52 (204)
483 3p32_A Probable GTPase RV1496/ 92.7 0.062 2.1E-06 54.3 3.5 26 81-106 78-103 (355)
484 2hjg_A GTP-binding protein ENG 92.7 0.049 1.7E-06 56.7 2.8 22 84-105 5-26 (436)
485 2x2e_A Dynamin-1; nitration, h 92.6 0.036 1.2E-06 56.0 1.7 23 84-106 33-55 (353)
486 3r7w_A Gtpase1, GTP-binding pr 92.6 0.064 2.2E-06 53.0 3.4 23 83-105 4-26 (307)
487 1d2n_A N-ethylmaleimide-sensit 92.5 0.067 2.3E-06 51.5 3.3 26 80-105 62-87 (272)
488 3gj0_A GTP-binding nuclear pro 92.4 0.041 1.4E-06 50.9 1.6 22 84-105 17-39 (221)
489 3t15_A Ribulose bisphosphate c 92.4 0.061 2.1E-06 52.8 2.9 25 82-106 36-60 (293)
490 4hlc_A DTMP kinase, thymidylat 92.3 0.084 2.9E-06 49.2 3.6 26 82-107 2-27 (205)
491 3uk6_A RUVB-like 2; hexameric 92.2 0.071 2.4E-06 53.4 3.3 28 80-107 68-95 (368)
492 2qgz_A Helicase loader, putati 92.2 0.08 2.7E-06 52.5 3.6 25 82-106 152-176 (308)
493 1f5n_A Interferon-induced guan 92.2 0.057 2E-06 58.5 2.7 34 70-106 29-62 (592)
494 3ec1_A YQEH GTPase; atnos1, at 92.1 0.063 2.2E-06 54.7 2.8 25 81-105 161-185 (369)
495 3l0i_B RAS-related protein RAB 92.1 0.014 4.8E-07 53.2 -2.0 23 84-106 35-57 (199)
496 3eie_A Vacuolar protein sortin 92.1 0.082 2.8E-06 52.4 3.5 26 80-105 49-74 (322)
497 3geh_A MNME, tRNA modification 92.0 0.059 2E-06 56.7 2.5 24 82-105 224-247 (462)
498 1ofh_A ATP-dependent HSL prote 92.0 0.074 2.5E-06 51.6 3.0 25 82-106 50-74 (310)
499 2qpt_A EH domain-containing pr 92.0 0.066 2.3E-06 57.6 2.9 24 83-106 66-89 (550)
500 1lnz_A SPO0B-associated GTP-bi 91.8 0.084 2.9E-06 53.3 3.2 32 74-105 150-181 (342)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.6e-51 Score=423.17 Aligned_cols=221 Identities=24% Similarity=0.366 Sum_probs=197.6
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..|+++||++.|..+. ....+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 23 ~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 3599999999996321 2357999999999999999999999999999999999999996 9999999998532
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 010938 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 201 (497)
.++.+|||||++.+++.+||+||+.++.... ..+..+.++++.++|+.+||.+..++ ++.+|||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGqkQ 170 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQKQ 170 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHH
Confidence 1357999999999999999999999987654 34566777889999999999887776 45689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010938 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||++ +.+.++||+|++|++|++++.|+++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999976 599999999995 6889999999999999999999998
Q ss_pred hHH
Q 010938 281 AAF 283 (497)
Q Consensus 281 ~~~ 283 (497)
++.
T Consensus 250 ev~ 252 (366)
T 3tui_C 250 EVF 252 (366)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2e-51 Score=422.16 Aligned_cols=217 Identities=24% Similarity=0.389 Sum_probs=194.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeC----C--
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT----K-- 124 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~----~-- 124 (497)
.|+++||+++| +.+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y-----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSF-----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 48999999999 4578999999999999999999999999999999999999996 99999999875 1
Q ss_pred -CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 010938 125 -LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 125 -~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 203 (497)
...+.+|||+|++.+||.+||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~QRV 147 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRY-----PHELSGGQQQRA 147 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSC-----GGGSCHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHH
Confidence 12367999999999999999999999986543 234456677899999999999888775 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010938 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+..+..+++.|+++. +.|.|+|++|||. .++..+||||++|++|+++..|+++++
T Consensus 148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHH
Confidence 99999999999999999999999999999999888875 4699999999995 789999999999999999999999887
Q ss_pred HH
Q 010938 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
..
T Consensus 227 ~~ 228 (359)
T 3fvq_A 227 YR 228 (359)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.3e-51 Score=423.35 Aligned_cols=217 Identities=25% Similarity=0.372 Sum_probs=197.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +.+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAW-----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 38999999999 4578999999999999999999999999999999999999996 9999999998532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 010938 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 207 (497)
+.+|||+|++.+||.+||+||+.|+...+ ..++++.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIGR 146 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHHHHHHHHH
Confidence 67999999999999999999999997764 345677778899999999998887764 4679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.+|++|||||||++||+..+..+++.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++..
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999999764 99999999995 78999999999999999999999998753
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.1e-51 Score=397.29 Aligned_cols=220 Identities=25% Similarity=0.356 Sum_probs=188.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010938 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS----- 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----- 126 (497)
|+++||+++|..+. ..+.+|+||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 78999999995321 1356999999999999999999999999999999999999996 99999999975321
Q ss_pred ----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCccCCCCCHHHHH
Q 010938 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCA-DTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 ----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSGGerq 201 (497)
++.+|||+|++.+++.+||+||+.++...+.....+..+..+++.++++.++|.+.. ++ ++.+|||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~Q 152 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQ 152 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHHHHH
Confidence 135999999999999999999999986543222344566677889999999997643 55 45679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010938 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ . +.++||+|++|++|+++..++++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcChh
Confidence 999999999999999999999999999999999999999765 99999999996 4 56899999999999999999887
Q ss_pred hH
Q 010938 281 AA 282 (497)
Q Consensus 281 ~~ 282 (497)
++
T Consensus 231 ~~ 232 (235)
T 3tif_A 231 GF 232 (235)
T ss_dssp --
T ss_pred hh
Confidence 64
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.4e-50 Score=400.87 Aligned_cols=216 Identities=29% Similarity=0.429 Sum_probs=191.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C---
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--L--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--~--- 125 (497)
.|+++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. .
T Consensus 24 ~l~i~~l~~~y-----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSF-----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 49999999999 3467999999999999999999999999999999999999986 999999998763 1
Q ss_pred --CcCcEEEEcCCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 010938 126 --SFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 --~~~~i~yv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 202 (497)
.++.++||+|++.+++.+||+||+.++. ... ..+..+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 167 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQR 167 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHH
Confidence 1246999999999999999999999964 332 2334455677899999999988777654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010938 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++|++++.|+++++
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 168 VAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987899999999995 678889999999999999999998876
Q ss_pred H
Q 010938 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 247 ~ 247 (263)
T 2olj_A 247 F 247 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-50 Score=401.64 Aligned_cols=216 Identities=28% Similarity=0.402 Sum_probs=191.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.| +.+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 6 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRY-----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 49999999999 3467999999999999999999999999999999999999986 9999999987531
Q ss_pred -------------CcCcEEEEcCCCCCCCCCCHHHHHHHHh-hccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCc
Q 010938 126 -------------SFGTAAYVTQDDNLIGTLTVRETISYSA-RLRLPDKMPWSEKRTLVERTIIEMGLQDC-ADTVIGNW 190 (497)
Q Consensus 126 -------------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~ 190 (497)
.++.++||+|++.+++.+||+||+.++. ..+ ..+..+.+++++++++.+||.+. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--- 151 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYP--- 151 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCG---
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCc---
Confidence 1246999999999999999999999964 322 23344556778999999999887 77654
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010938 191 HLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 191 ~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||+|++|++
T Consensus 152 --~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~ 228 (262)
T 1b0u_A 152 --VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQ 228 (262)
T ss_dssp --GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEET
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 57999999999999999999999999999999999999999999999987899999999995 678889999999999
Q ss_pred CeEEEEeCchhHH
Q 010938 271 GKTVYFGETSAAF 283 (497)
Q Consensus 271 G~iv~~G~~~~~~ 283 (497)
|++++.|+++++.
T Consensus 229 G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 229 GKIEEEGDPEQVF 241 (262)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHH
Confidence 9999999988764
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2e-50 Score=390.86 Aligned_cols=211 Identities=29% Similarity=0.367 Sum_probs=187.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++|+++.| +.+++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y-----~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVI-----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEE-----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 48999999999 3467999999999999999999999999999999999999986 99999999875321
Q ss_pred -----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 010938 127 -----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 127 -----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 201 (497)
.+.++||+|++.+++.+||+||+.++...+ ..+..+.+++++++++.+||.+..++.+ .+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 147 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQ 147 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 146999999999999999999999976543 2334455677899999999988877754 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010938 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ ..+ .+||++++|++|++++.|+.
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999999999987799999999995 455 89999999999999998863
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=9.1e-51 Score=404.64 Aligned_cols=218 Identities=27% Similarity=0.420 Sum_probs=192.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|. +.+.+|+||||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 7 ~l~i~~ls~~y~----~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYS----DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECT----TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEEC----CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccH
Confidence 599999999993 2345999999999999999999999999999999999999986 9999999998631
Q ss_pred --CcCcEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 010938 126 --SFGTAAYVTQDDN-LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 --~~~~i~yv~Q~~~-l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 202 (497)
.++.+|||||++. .+..+||+||+.|+.... ..+..+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQR 151 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKR 151 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHH
Confidence 1356999999973 344789999999987643 3456667788999999999988877754 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010938 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
|+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++ +++..+||+|++|++|++++.|++++
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999997 5699999999996 57889999999999999999999988
Q ss_pred HHH
Q 010938 282 AFE 284 (497)
Q Consensus 282 ~~~ 284 (497)
+..
T Consensus 231 ~~~ 233 (275)
T 3gfo_A 231 VFA 233 (275)
T ss_dssp HTH
T ss_pred Hhc
Confidence 753
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-50 Score=395.90 Aligned_cols=217 Identities=29% Similarity=0.394 Sum_probs=192.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----S 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~ 126 (497)
.|+++||++.| +.+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .
T Consensus 15 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 15 AVVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHH
T ss_pred eEEEEEEEEEE-----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHH
Confidence 48999999999 3467999999999999999999999999999999999999986 9999999987532 1
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 010938 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 206 (497)
++.++||+|++.+++.+||+||+.+....+ ..+..+.+++++++++.+||.+..++.+ .+|||||||||+||
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIA 158 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHH
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHH
Confidence 356999999999999999999999976543 2234444567889999999988777754 57999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||++++|++|++++.|+++++..
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999987899999999995 67888999999999999999999887654
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3e-50 Score=397.53 Aligned_cols=217 Identities=20% Similarity=0.298 Sum_probs=189.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEE-----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 59999999999 3467999999999999999999999999999999999999986 99999999985321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhc-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCccCCC
Q 010938 127 --FGTAAYVTQDDNLIGTLTVRETISYSARL-RLPD---------KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRG 194 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 194 (497)
++.++||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||.+..++.+ .+
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 153 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GE 153 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hh
Confidence 24699999999999999999999987532 1100 0122344567899999999988777755 47
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE
Q 010938 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 195 LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv 274 (497)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||+|++|++|+++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999996 5788899999999999999
Q ss_pred EEeCchh
Q 010938 275 YFGETSA 281 (497)
Q Consensus 275 ~~G~~~~ 281 (497)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999887
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8.4e-50 Score=413.22 Aligned_cols=217 Identities=25% Similarity=0.393 Sum_probs=194.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.| +.+++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVF-----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 48999999999 3467999999999999999999999999999999999999986 9999999986421
Q ss_pred ----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 010938 126 ----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERR 201 (497)
Q Consensus 126 ----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 201 (497)
..+.+|||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~Q 146 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRELSGGQRQ 146 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSCHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----cccCCHHHHH
Confidence 2357999999999999999999999987653 234556677899999999998887775 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCch
Q 010938 202 RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETS 280 (497)
Q Consensus 202 Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~ 280 (497)
||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~ 225 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999764 99999999995 6889999999999999999999998
Q ss_pred hHHH
Q 010938 281 AAFE 284 (497)
Q Consensus 281 ~~~~ 284 (497)
++..
T Consensus 226 ~l~~ 229 (372)
T 1g29_1 226 EVYD 229 (372)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4e-50 Score=413.28 Aligned_cols=217 Identities=24% Similarity=0.419 Sum_probs=193.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +++++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYF-----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhh
Confidence 38999999999 3567999999999999999999999999999999999999986 9999999998532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 010938 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 207 (497)
+.+|||+|++.+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK-----PTQLSGGQQQRVALAR 146 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999986543 233344457799999999998887775 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++..
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999764 99999999995 68899999999999999999999988753
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.1e-50 Score=412.97 Aligned_cols=217 Identities=26% Similarity=0.413 Sum_probs=195.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +.+++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKF-----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEES-----SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhH
Confidence 38999999999 3467999999999999999999999999999999999999986 9999999998532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 010938 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 207 (497)
+.+|||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRY-----PWQLSGGQQQRVAIAR 146 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCC-----hhhCCHHHHHHHHHHH
Confidence 67999999999999999999999987653 234556677899999999999887774 4579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++..
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999764 99999999995 68899999999999999999999988753
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.1e-50 Score=411.15 Aligned_cols=219 Identities=24% Similarity=0.421 Sum_probs=195.9
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010938 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
...|+++||++.|. +++++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 12 ~~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence 34699999999982 2357999999999999999999999999999999999999986 9999999997532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 010938 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 205 (497)
..+.+|||+|+..+||.+||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~QRval 156 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRF-----PHELSGGQQQRVAL 156 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHH
Confidence 2467999999999999999999999987653 234556677899999999998887775 45799999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010938 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 157 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999764 99999999995 6889999999999999999999998875
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.4e-50 Score=412.14 Aligned_cols=216 Identities=25% Similarity=0.386 Sum_probs=193.8
Q ss_pred EEEEEeEEEEEEccCCcccc--eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010938 51 RLTWKDLTVMVTLSNGETHN--VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--- 125 (497)
.|+++||++.| +.++ +|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y-----~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVF-----KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEE-----GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEE-----CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccccc
Confidence 38999999999 3466 999999999999999999999999999999999999986 9999999987421
Q ss_pred -----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 010938 126 -----SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGER 200 (497)
Q Consensus 126 -----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 200 (497)
..+.+|||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~-----~~~LSGGq~ 146 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHF-----PRELSGAQQ 146 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHH
Confidence 2467999999999999999999999986543 234556677899999999999887775 457999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010938 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
|||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|++
T Consensus 147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~ 225 (353)
T 1oxx_K 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225 (353)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999764 99999999995 688999999999999999999999
Q ss_pred hhHH
Q 010938 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 226 ~~l~ 229 (353)
T 1oxx_K 226 EDLY 229 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.6e-50 Score=390.35 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=188.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---- 126 (497)
.|+++||++.| +.+++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYY-----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEE-----CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHH
Confidence 59999999999 3467999999999999999999999999999999999999986 99999999985321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCCCCCHHHHHHH
Q 010938 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMG-LQDCADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGerqRv 203 (497)
++.++||+|++.+++.+||+||+.++.... ....+..+.++++++.++ |.+..++. +.+|||||||||
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LSgGq~qrv 148 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGGEQQML 148 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCCHHHHHHH
Confidence 235999999999999999999999874211 122334566788999994 87766664 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010938 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999999987899999999995 6788999999999999999999887753
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9.8e-50 Score=395.62 Aligned_cols=215 Identities=30% Similarity=0.371 Sum_probs=190.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--- 126 (497)
..|+++|+++.| +.+++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 10 ~~l~~~~l~~~~-----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHV-----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHH
T ss_pred ceEEEEeEEEEe-----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHH
Confidence 469999999999 4578999999999999999999999999999999999999986 99999999985421
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 010938 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 204 (497)
.+.++|++|++.+++.+||+||+.++.... ...+.+++++++++.++|.+..++.+ .+|||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~ 151 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQ 151 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHH
Confidence 246999999999888899999999986533 11234567889999999988877755 479999999999
Q ss_pred HHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010938 205 IALEILM------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 205 IA~aL~~------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++..+||+|++|++|++++.|
T Consensus 152 iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 9999999 99999999999999999999999999999765 67999999995 6888999999999999999999
Q ss_pred CchhHH
Q 010938 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 231 ~~~~~~ 236 (266)
T 4g1u_C 231 TPEEVL 236 (266)
T ss_dssp CHHHHC
T ss_pred CHHHHh
Confidence 998764
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=8.7e-50 Score=412.63 Aligned_cols=217 Identities=23% Similarity=0.377 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---Cc
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SF 127 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~ 127 (497)
.|+++||++.| +.+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRF-----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEE-----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhh
Confidence 39999999999 3467999999999999999999999999999999999999986 9999999998532 23
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHH
Q 010938 128 GTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 128 ~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 207 (497)
+.+|||+|+..+||++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQRVAVAR 154 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHH
Confidence 57999999999999999999999985432 234556677899999999998887764 5679999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++|||+ .++..+||+|++|++|+++..|+++++..
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999764 99999999995 68899999999999999999999988753
No 19
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.1e-49 Score=402.12 Aligned_cols=247 Identities=26% Similarity=0.353 Sum_probs=199.0
Q ss_pred CchhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEe
Q 010938 1 MRDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (497)
Q Consensus 1 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (497)
+++.++++|++++++.+|....... ..+ . ......|+++||++.|. +.+.+|+||||+|+
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~~~~~~--~~~-------------~-~~~~~~i~~~~vs~~y~----~~~~vL~~isl~i~ 78 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEVKDLPG--AGP-------------L-RFQKGRIEFENVHFSYA----DGRETLQDVSFTVM 78 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCCCTT--CBC-------------C-CCSSCCEEEEEEEEESS----TTCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCcccccccc--ccc-------------c-CCCCCeEEEEEEEEEcC----CCCceeeeeeEEEc
Confidence 4678999999999987665432100 000 0 01123599999999994 24679999999999
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
+||++||+||||||||||+++|+|+++|. +|+|.++|.++... ++.++||+|++.+|+. ||+||+.++...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~ 154 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT 154 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSE-EHHHHHHTTSTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCcc-cHHHHHHhhccc
Confidence 99999999999999999999999999996 99999999986431 3579999999999864 999999987432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010938 156 RLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
... ..+.++++.+++. +..++.++. ++.+|||||||||+|||||+.+|+||||||||++||+.
T Consensus 155 -----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 155 -----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp -----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred -----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 112 2244445544443 345677765 66789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
++..|++.|+++.+ ++|+|++||++ +.+.. ||+|++|++|++++.|+++++..
T Consensus 225 ~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 225 NERAIQASLAKVCA-NRTTIVVAHRL-STVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECCSH-HHHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999865 69999999996 45554 99999999999999999988764
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.2e-49 Score=405.25 Aligned_cols=211 Identities=26% Similarity=0.426 Sum_probs=188.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcC
Q 010938 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++||++.| +.+ +|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y-----~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKW-----KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEEC-----SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEE-----CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 7899999999 345 999999999999999999999999999999999999986 9999999998532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 010938 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 208 (497)
.+|||+|+..+||++||+||+.|+...+. .+.. ++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAra 141 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARA 141 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 69999999999999999999999876431 1112 66889999999998887754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010938 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++|||+ .++..+||+|++|++|+++..|+++++.
T Consensus 142 L~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 599999999995 6889999999999999999999998864
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1e-48 Score=388.46 Aligned_cols=218 Identities=28% Similarity=0.376 Sum_probs=187.4
Q ss_pred EEEEEeEEEEEEccCCcc---cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 010938 51 RLTWKDLTVMVTLSNGET---HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~---~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-- 125 (497)
.|+++||++.|.. +. +.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~---~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~ 75 (266)
T 2yz2_A 2 RIEVVNVSHIFHR---GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYE 75 (266)
T ss_dssp CEEEEEEEEEEST---TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHH
T ss_pred EEEEEEEEEEecC---CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHH
Confidence 4899999999931 12 57999999999999999999999999999999999999986 9999999987532
Q ss_pred CcCcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCCCCCHHHHHH
Q 010938 126 SFGTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ--DCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 126 ~~~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSGGerqR 202 (497)
.++.++||+|++ .+++.+||+||+.++.... .+..+.+++++++++.+||. +..++.+ .+||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qR 146 (266)
T 2yz2_A 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRR 146 (266)
T ss_dssp HGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHH
T ss_pred hhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHH
Confidence 235799999995 4667789999999975321 11122245688999999998 7777654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010938 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ ..+..+||++++|++|++++.|+++++
T Consensus 147 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987799999999996 567889999999999999999998876
Q ss_pred HH
Q 010938 283 FE 284 (497)
Q Consensus 283 ~~ 284 (497)
..
T Consensus 226 ~~ 227 (266)
T 2yz2_A 226 LE 227 (266)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1e-48 Score=382.61 Aligned_cols=210 Identities=26% Similarity=0.365 Sum_probs=184.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcC
Q 010938 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFG 128 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~ 128 (497)
|+++|+++.| +. +|+||||++++ |+++|+||||||||||||+|+|+++|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y-----~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRL-----GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEE-----TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEe-----CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 6899999999 22 59999999999 999999999999999999999999986 9999999987532 235
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 010938 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 208 (497)
.++||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAra 140 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARA 140 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999999999999999999874321 11222567889999999988777754 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010938 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||++ .++..+||++++|++|++++.|+++++.
T Consensus 141 l~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999976 499999999995 6788999999999999999999988764
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.4e-48 Score=382.35 Aligned_cols=216 Identities=23% Similarity=0.317 Sum_probs=179.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCC--
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR--LASNAFLSGTILLNGHKTKLS-- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~--~~~~~~~~G~I~~~G~~~~~~-- 126 (497)
.|+++||++.| +.+.+|+||||++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|++....
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASI-----DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEE-----CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 48999999999 346799999999999999999999999999999999998 6664 99999999985321
Q ss_pred ----cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCC-CCHHHH
Q 010938 127 ----FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRG-ISGGER 200 (497)
Q Consensus 127 ----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~-LSGGer 200 (497)
...++|++|++.+++.+||+||+.++............+..+++.++++.+||. +..++.+ .+ ||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqk 149 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEK 149 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHH
Confidence 234899999999999999999999875321111122334456788999999994 6666644 46 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEEeCc
Q 010938 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~G~~ 279 (497)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ ..+..+ ||++++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999976799999999996 567777 599999999999999987
Q ss_pred h
Q 010938 280 S 280 (497)
Q Consensus 280 ~ 280 (497)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 6
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.9e-48 Score=388.92 Aligned_cols=219 Identities=25% Similarity=0.277 Sum_probs=185.0
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C--
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK--L-- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~--~-- 125 (497)
+.|+++||++.| +.+++|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.. .
T Consensus 20 ~~l~~~~l~~~y-----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 20 MLIQLDQIGRMK-----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91 (279)
T ss_dssp EEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CC
T ss_pred ceEEEEeEEEEE-----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCC
Confidence 469999999999 3467999999999999999999999999999999999999986 999999998753 1
Q ss_pred ---CcCcEEEEcCCCCC--CCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH
Q 010938 126 ---SFGTAAYVTQDDNL--IGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE 199 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l--~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 199 (497)
.++.++||+|++.+ .+.+||+||+.++...... ......+..++++++++.+||.+..++.+ .+|||||
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 166 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----GYLSTGE 166 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHH
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHH
Confidence 13569999999754 3457999999986321100 01112334567889999999988777755 4799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE--EEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010938 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTV--IASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--I~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++ .++..+||+|++|++|++++.|
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999997668999 9999995 5778899999999999999999
Q ss_pred CchhH
Q 010938 278 ETSAA 282 (497)
Q Consensus 278 ~~~~~ 282 (497)
+++++
T Consensus 246 ~~~~~ 250 (279)
T 2ihy_A 246 AVEDI 250 (279)
T ss_dssp EHHHH
T ss_pred CHHHH
Confidence 88765
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.3e-47 Score=374.82 Aligned_cols=210 Identities=27% Similarity=0.334 Sum_probs=182.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcE
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.|. .++.+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.+ .+.+
T Consensus 4 ~l~i~~l~~~y~----~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQ----AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEET----TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSCE
T ss_pred eEEEeeEEEEeC----CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------eccE
Confidence 489999999992 1467999999999999999999999999999999999999986 999982 2569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 010938 131 AYVTQDDNLIGTLTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL 209 (497)
+||+|++.+++.+||+||+.++...... ........+++++++++.+||.+..++.+ .+|||||||||+|||||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL 143 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAI 143 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 9999999999899999999987532210 00112334567889999999988777754 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010938 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ +++..+||++++|++|+ ++.|+++++
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999999876 99999999995 67889999999999999 999988765
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.4e-47 Score=378.68 Aligned_cols=221 Identities=28% Similarity=0.343 Sum_probs=186.0
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC--
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNAFLSGTILLNGHKTKLS-- 126 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~~-- 126 (497)
.|+++||++.| +++.+|+||||++++||+++|+||||||||||||+|+|+. +| .+|+|.++|.+....
T Consensus 20 ~l~~~~l~~~y-----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSV-----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEE-----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCcCCH
Confidence 49999999999 3467999999999999999999999999999999999984 45 389999999875321
Q ss_pred ----cCcEEEEcCCCCCCCCCCHHHHHHHHhh-c---cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCH
Q 010938 127 ----FGTAAYVTQDDNLIGTLTVRETISYSAR-L---RLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 127 ----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~-~---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 197 (497)
...++||+|++.+++.+||.||+.+... . ......+..+..++++++++.+||. +..++.++ .+|||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSg 167 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSG 167 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCCH
Confidence 1348999999999999999999987642 1 1111223444456789999999996 45565432 14999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhc-CCeEEEeeCCeEEEE
Q 010938 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFEL-FDRLYLLSGGKTVYF 276 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~-~D~v~~L~~G~iv~~ 276 (497)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ ..+..+ ||++++|++|++++.
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999976799999999996 566665 899999999999999
Q ss_pred eCchhHHH
Q 010938 277 GETSAAFE 284 (497)
Q Consensus 277 G~~~~~~~ 284 (497)
|+++++..
T Consensus 247 g~~~~~~~ 254 (267)
T 2zu0_C 247 GDFTLVKQ 254 (267)
T ss_dssp ECTTHHHH
T ss_pred cCHHHHhh
Confidence 99887653
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.3e-47 Score=381.35 Aligned_cols=217 Identities=29% Similarity=0.376 Sum_probs=179.5
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|..+ ..+.+|+||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 16 ~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 59999999998310 1267999999999999999999999999999999999999986 9999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCccCCCCCHH
Q 010938 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSE-----KRTLVERTIIEM--GLQDCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGG 198 (497)
.++.++||+|++.+++ .||+||+.++.... . ...+ ....+.++++.+ ||.+..++ ++.+||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG 160 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGG 160 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHH
Confidence 1246999999998887 59999999864221 1 1111 122345677777 66655554 45689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010938 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ +|+|||++||++ ..+. .||+|++|++|++++.|
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~~~g 238 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999865 589999999995 4554 59999999999999999
Q ss_pred CchhHHH
Q 010938 278 ETSAAFE 284 (497)
Q Consensus 278 ~~~~~~~ 284 (497)
+++++..
T Consensus 239 ~~~~l~~ 245 (271)
T 2ixe_A 239 THLQLME 245 (271)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9887653
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.1e-47 Score=372.94 Aligned_cols=214 Identities=28% Similarity=0.442 Sum_probs=179.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..++++||++.|.. +.+.+|+||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+...
T Consensus 6 ~~~~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 35899999999831 2357999999999999999999999999999999999999986 9999999998532
Q ss_pred -CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCCCCH
Q 010938 126 -SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD-------TVIGNWHLRGISG 197 (497)
Q Consensus 126 -~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSG 197 (497)
.++.++||+|++.+++ .||+||+.++.. ... .+.+.++++.+++.+..+ +.++ ..+.+|||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSg 148 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSG 148 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCCCH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCCCH
Confidence 1246999999998887 599999988631 112 234667777788765443 3333 24678999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010938 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||++ ..+ ..||++++|++|++++.|
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~-~~~-~~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRL-STV-KNADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSG-GGG-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999995 589999999996 445 469999999999999999
Q ss_pred CchhHH
Q 010938 278 ETSAAF 283 (497)
Q Consensus 278 ~~~~~~ 283 (497)
+++++.
T Consensus 226 ~~~~l~ 231 (247)
T 2ff7_A 226 KHKELL 231 (247)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 987763
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=9e-47 Score=370.82 Aligned_cols=205 Identities=27% Similarity=0.385 Sum_probs=181.1
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++|+++. ++|+|+||++++||+++|+||||||||||||+|+|+++| . |+|.++|++...
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 4889999874 589999999999999999999999999999999999987 5 999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 010938 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 205 (497)
.++.++|++|++.+++.+||+||+.++... ... +++++++++.+||.+..++.+ .+|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~l 137 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRL 137 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHH
Confidence 124699999999999999999999986311 111 456888999999988777654 5799999999999
Q ss_pred HHHHHhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010938 206 ALEILMRPR-------LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 206 A~aL~~~p~-------lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
||||+.+|+ +|||||||+|||+.++..+++.|++++++|+|||++||++ ..+..+||++++|++|++++.|+
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999 9999999999999999999999999987799999999995 67889999999999999999998
Q ss_pred chhH
Q 010938 279 TSAA 282 (497)
Q Consensus 279 ~~~~ 282 (497)
++++
T Consensus 217 ~~~~ 220 (249)
T 2qi9_C 217 REEV 220 (249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-47 Score=371.48 Aligned_cols=212 Identities=26% Similarity=0.426 Sum_probs=180.3
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010938 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----S 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~ 126 (497)
|+++|+++.|. +.+++|+||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHH
Confidence 78999999882 2367999999999999999999999999999999999999986 9999999987531 2
Q ss_pred cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCccCCCCCHHH
Q 010938 127 FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTV-------IGNWHLRGISGGE 199 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-------vg~~~~~~LSGGe 199 (497)
++.++||+|++.+++. ||+||+.++... ... .+.+.++++.+++.+..++. ++ .++.+|||||
T Consensus 75 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~LSgGq 144 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVG-ERGVKISGGQ 144 (243)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEES-TTSBCCCHHH
T ss_pred HhhEEEEcCCCccccc-cHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhc-cCcCcCCHHH
Confidence 3569999999988874 999999875321 111 23467788889987765443 22 2567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010938 200 RRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 200 rqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
||||+|||||+++|++|||||||+|||+.++..+++.|++++ +|+|||++||++ ..+ ..||++++|++|++++.|++
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 699999999996 455 56999999999999999988
Q ss_pred hhHH
Q 010938 280 SAAF 283 (497)
Q Consensus 280 ~~~~ 283 (497)
+++.
T Consensus 222 ~~~~ 225 (243)
T 1mv5_A 222 NELV 225 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-47 Score=364.11 Aligned_cols=203 Identities=23% Similarity=0.337 Sum_probs=173.9
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcC
Q 010938 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...|+++|+++.| +. ++|+||||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+....++
T Consensus 8 ~~~l~~~~ls~~y-----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGY-----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEES-----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEe-----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 3469999999998 34 7999999999999999999999999999999999999986 9999999987532346
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 010938 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 208 (497)
.++||+|++.+++.+||+||+.++...+. .. .+ +++++++++.+||.+. ++. +.+|||||||||+||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKK-----LGELSQGTIRRVQLAST 147 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHHHHHHHHH
Confidence 79999999999999999999999765421 11 11 3567889999999876 554 45799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010938 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+||+++++ +|+|
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999976689999999996 5788888988765 4544
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8.5e-46 Score=366.25 Aligned_cols=214 Identities=28% Similarity=0.400 Sum_probs=177.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL----- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----- 125 (497)
.|+++||++.|... ..+.+|+||||++++|++++|+|||||||||||++|+|++++ +|+|.++|.+...
T Consensus 17 ~l~i~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CEEEEEEEECCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHH
Confidence 59999999998311 124699999999999999999999999999999999999874 7999999987532
Q ss_pred CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHH
Q 010938 126 SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGG 198 (497)
Q Consensus 126 ~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGG 198 (497)
.++.++||+|++.+++ .||+||+.++.. .... +.+.++++.+++. +..++.++. ++.+||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgG 159 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGG 159 (260)
T ss_dssp HHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHH
T ss_pred HhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHH
Confidence 1356999999999886 599999988531 1111 2345566666654 334555543 56789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010938 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ |+|||++||++ ..+ ..||++++|++|++++.|+
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~-~~~-~~~d~i~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRL-STI-SSAESIILLNKGKIVEKGT 236 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSG-GGS-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999965 89999999996 444 4699999999999999999
Q ss_pred chhHHH
Q 010938 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
++++..
T Consensus 237 ~~~l~~ 242 (260)
T 2ghi_A 237 HKDLLK 242 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887643
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.7e-46 Score=366.54 Aligned_cols=208 Identities=21% Similarity=0.327 Sum_probs=179.7
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CcCc
Q 010938 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGT 129 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~ 129 (497)
|+++|+++.|.... ..+.+|+|+||+++ |++++|+||||||||||||+|+|++ |+ +|+|.++|.+... .++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 78999999994200 01679999999999 9999999999999999999999999 86 9999999987521 2457
Q ss_pred EE-EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHH
Q 010938 130 AA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 130 i~-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~ 207 (497)
++ |++|++.+ .+||+||+.++.... .. .+++++++++.+||. +..++.+ .+|||||||||+|||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAr 141 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSL 141 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHH
Confidence 99 99999887 789999999976542 11 134578899999998 7777654 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC-eEEEeeCCeEEEEeCchhHH
Q 010938 208 EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD-RLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 208 aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D-~v~~L~~G~iv~~G~~~~~~ 283 (497)
||+.+|++|||||||+|||+.++..+++.|+++++ |||++||++ .++.++|| ++++|++|++++.|+++++.
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 142 ALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999998854 999999996 57788999 99999999999999998765
No 34
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.7e-45 Score=402.56 Aligned_cols=247 Identities=25% Similarity=0.307 Sum_probs=199.1
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|...... .+ . ........|+++|++++|+. +.+++|+|+|+++++
T Consensus 306 ~~~~s~~ri~~~l~~~~~~~~~~----~~---------~---~~~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 366 (578)
T 4a82_A 306 QSFASMDRVFQLIDEDYDIKNGV----GA---------Q---PIEIKQGRIDIDHVSFQYND---NEAPILKDINLSIEK 366 (578)
T ss_dssp HHHHHHHHHHHHHTCCCSSCCCT----TC---------C---CCCCCSCCEEEEEEEECSCS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcccCCC----Cc---------c---ccCCCCCeEEEEEEEEEcCC---CCCcceeeeEEEECC
Confidence 57789999999998766543200 00 0 00011234999999999942 246799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|+ +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++...
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~- 441 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT- 441 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS-
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999996 99999999986421 3579999999999987 999999886321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
... +.+.+.++..++ .+..++.+|+ ++.+||||||||++|||||+++|++|+|||||||||+.+
T Consensus 442 ----~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~ 512 (578)
T 4a82_A 442 ----ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512 (578)
T ss_dssp ----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHH
T ss_pred ----CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 122 224444444443 4567888875 667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++.+ |+|+|+++|++. .+ ..||+|++|++|++++.|+++++..
T Consensus 513 ~~~i~~~l~~~~~-~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 513 ESIIQEALDVLSK-DRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999998854 799999999964 44 5699999999999999999988754
No 35
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-45 Score=403.85 Aligned_cols=247 Identities=24% Similarity=0.376 Sum_probs=198.6
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|...... .+ . ........|+++|++++|+. +.+++|+|+||++++
T Consensus 308 ~~~~s~~ri~~~l~~~~~~~~~~----~~---------~---~~~~~~~~i~~~~v~~~y~~---~~~~~l~~isl~i~~ 368 (587)
T 3qf4_A 308 RASASAKRVLEVLNEKPAIEEAD----NA---------L---ALPNVEGSVSFENVEFRYFE---NTDPVLSGVNFSVKP 368 (587)
T ss_dssp HHHHHHHHHHHHHHCCCSCCCCT----TC---------B---CCSCCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCccCCCC----Cc---------c---ccCCCCCcEEEEEEEEEcCC---CCCcceeceEEEEcC
Confidence 47789999999998776543200 00 0 00011235999999999942 346799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|+ +|+|.+||++... .+++++||||++.+|+. ||+||+.++...
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~- 443 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRED- 443 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSS-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCC-
Confidence 9999999999999999999999999996 9999999998542 13579999999999976 999999876321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
...++ +.+.++..+ +.+..++.+++ ++.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 444 ----~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 444 ----ATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp ----CCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred ----CCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 12222 223333333 34567788875 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++. +|+|+|+++|++ +.+ ..||+|++|++|++++.|+++++..
T Consensus 515 ~~~i~~~l~~~~-~~~tvi~itH~l-~~~-~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 515 EKRILDGLKRYT-KGCTTFIITQKI-PTA-LLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHHHS-TTCEEEEEESCH-HHH-TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhC-CCCEEEEEecCh-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999985 489999999996 344 6899999999999999999998764
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.7e-45 Score=400.44 Aligned_cols=250 Identities=27% Similarity=0.389 Sum_probs=200.0
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeE-EEEEeEEEEEEccCCcccceeeceEEEEe
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSAR-LTWKDLTVMVTLSNGETHNVLEGLTGYAE 80 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ls~~~~~~~~~~~~iL~~vs~~i~ 80 (497)
++.+|++|+.++++.+|..+. . + .. . ........ |+++|+++.|..+ .++++|+|+||+++
T Consensus 307 ~~~~s~~ri~~~l~~~~~~~~-~-~--~~--------~----~~~~~~~~~i~~~~v~~~y~~~--~~~~vl~~isl~i~ 368 (595)
T 2yl4_A 307 KGLGAGGRLWELLEREPKLPF-N-E--GV--------I----LNEKSFQGALEFKNVHFAYPAR--PEVPIFQDFSLSIP 368 (595)
T ss_dssp HHHHHHHHHHHHHTCCCSSCS-S-C--SB--------C----CCTTTCCCCEEEEEEEEECSSC--TTSEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCccCC-C-C--CC--------C----CCcCCCCCeEEEEEEEEEeCCC--CCCccccceEEEEc
Confidence 467899999999987665321 0 0 00 0 00011224 8999999999421 12569999999999
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
+||++||+||||||||||+++|+|+++|+ +|+|.+||++... .++.++||+|++.+|+. ||+||+.++...
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~ 444 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADD 444 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCC
Confidence 99999999999999999999999999986 9999999998642 13469999999999875 999999987432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010938 156 RLPDKMPWSEKRTLVERTIIEMGLQ-------DCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
. ...+ +++++++++.+++. +..|+.+|+ ++.+|||||||||+|||||+++|++|+|||||++||+.
T Consensus 445 ~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~ 517 (595)
T 2yl4_A 445 P--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAE 517 (595)
T ss_dssp T--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHH
T ss_pred c--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHH
Confidence 1 0112 24466777777764 456888876 56789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010938 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
++..+.+.|+++.+ |+|+|++||++ +.+ +.||+|++|++|++++.|+++++.
T Consensus 518 ~~~~i~~~l~~~~~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 518 NEYLVQEALDRLMD-GRTVLVIAHRL-STI-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHHHHHHHHHHT-TSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECSCC--
T ss_pred HHHHHHHHHHHHhc-CCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999876 79999999996 455 569999999999999999998864
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.2e-45 Score=399.84 Aligned_cols=246 Identities=27% Similarity=0.375 Sum_probs=200.3
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|..+. .+ . . .. .....|+++|+++.|.. +++++|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~------~~--~-----~----~~-~~~~~i~~~~v~~~y~~---~~~~~l~~v~~~i~~ 368 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKDE------GK--R-----V----ID-RATGDLEFRNVTFTYPG---REVPALRNINLKIPA 368 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCCC------CC--B-----C----CS-CCCCCEEEEEEEECSSS---SSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCccC------CC--C-----C----CC-CCCCcEEEEEEEEEcCC---CCCccccceeEEEcC
Confidence 567899999999987665321 00 0 0 00 01124999999999831 126799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|+ +|+|.+||++.... ++.++||+|++.+|+. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-- 442 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT--
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC--
Confidence 9999999999999999999999999986 99999999986421 3469999999999986 99999998641
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 157 LPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+ ..+ ++++.++++.+++.+ ..++.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 443 -~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 443 -E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp -S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred -C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1 122 234666777777643 46777775 577899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++.+ |+|+|++||++. .+ +.||+|++|++|++++.|+++++..
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 516 ERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999865 899999999964 44 5799999999999999999988754
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.3e-45 Score=399.01 Aligned_cols=246 Identities=28% Similarity=0.386 Sum_probs=199.6
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|..+. +..+ . ......|+++|++++|.. +++++|+|+|+++++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~----~~~~-------------~-~~~~~~i~~~~v~~~y~~---~~~~~l~~i~l~i~~ 368 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDN----GKYE-------------A-ERVNGEVDVKDVTFTYQG---KEKPALSHVSFSIPQ 368 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCC----CCCC-------------C-CCCCCeEEEEEEEEEcCC---CCccccccceEEECC
Confidence 577899999999986654321 0000 0 011235999999999942 126799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||+++|+||||||||||+++|+|+++|+ +|+|.+||++... .++.++||+|++.+|+. ||+||+.++..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-- 442 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE-- 442 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC--
Confidence 9999999999999999999999999986 8999999987532 23579999999999985 99999998631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 157 LPDKMPWSEKRTLVERTIIEMGLQD-------CADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+ ..+ ++.+.++++.+++.+ ..|+.+|+ .+.+||||||||++|||||+++|++|+|||||+|||+.+
T Consensus 443 -~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 443 -G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred -C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 112 234666777777643 45677775 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++.+ |+|+|+++|++ +.+ +.||+|++|++|++++.|+++++..
T Consensus 516 ~~~i~~~l~~~~~-~~tvi~itH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 516 ERAIQAALDELQK-NKTVLVIAHRL-STI-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHHHHHHHHHcC-CCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999865 89999999996 444 5799999999999999999887653
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.1e-45 Score=354.79 Aligned_cols=204 Identities=23% Similarity=0.327 Sum_probs=168.3
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcE
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.|.. +.+++|+||||++++|++++|+|||||||||||++|+|+++|. +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 5899999999831 2467999999999999999999999999999999999999986 99999998 48
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHHHH
Q 010938 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSGGerqRv 203 (497)
+|++|++.+++. ||+||+.++... .. ....+.++.+++.+. .++.++. .+.+|||||||||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~~~------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv 139 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGVSY------DE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 139 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTSCC------CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccCCc------Ch----HHHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHH
Confidence 999999999886 999999986321 11 113334444554332 2333432 4678999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010938 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQT-LRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||++ ..+ ..||++++|++|++++.|+++++
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999997 45554 489999999995 455 46999999999999999998776
Q ss_pred H
Q 010938 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 217 ~ 217 (229)
T 2pze_A 217 Q 217 (229)
T ss_dssp H
T ss_pred H
Confidence 4
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.6e-45 Score=356.20 Aligned_cols=208 Identities=25% Similarity=0.365 Sum_probs=166.8
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcE
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.|.. ..+.+|+||||++++|++++|+|||||||||||++|+|+++|+ +|+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EE
Confidence 3899999999831 1367999999999999999999999999999999999999885 99999998 38
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHH---HHHHcCCCc-cccccccCccCCCCCHHHHHHHHHH
Q 010938 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVER---TIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIA 206 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA 206 (497)
+||+|++.+ +.+||+||+.++.... .... ..+.+ +++.+++.+ ..++.++ .++.+|||||||||+||
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~~~------~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQLE------EPYY-RSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSCCC------TTHH-HHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcC-CCcCHHHHhhCccccC------HHHH-HHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHH
Confidence 999999865 5789999999864211 1111 11111 222333322 2233333 35678999999999999
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHH
Q 010938 207 LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLR---CLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAF 283 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 283 (497)
|||+.+|++|||||||+|||+.++..+++.|. ++. +|+|||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 443 4899999999974 44 579999999999999999988764
Q ss_pred H
Q 010938 284 E 284 (497)
Q Consensus 284 ~ 284 (497)
.
T Consensus 217 ~ 217 (237)
T 2cbz_A 217 A 217 (237)
T ss_dssp H
T ss_pred h
Confidence 3
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3e-45 Score=402.07 Aligned_cols=245 Identities=24% Similarity=0.349 Sum_probs=196.6
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
++.+|++|+.++++.+|..+. + .. . ........|+++|+++.|. +++++|+|+|+++++
T Consensus 322 ~~~~s~~ri~~~l~~~~~~~~---~--~~---------~---~~~~~~~~i~~~~v~~~y~----~~~~~l~~isl~i~~ 380 (598)
T 3qf4_B 322 MALASAERIFEILDLEEEKDD---P--DA---------V---ELREVRGEIEFKNVWFSYD----KKKPVLKDITFHIKP 380 (598)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC---S--SC---------C---CCCSCCCCEEEEEEECCSS----SSSCSCCSEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCCCCC---C--CC---------C---CCCCCCCeEEEEEEEEECC----CCCccccceEEEEcC
Confidence 467899999999987665321 0 00 0 0001123499999999983 346799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|+ +|+|.+||.+.... ++.++||+|++.+|+. ||+||+.++...
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~- 455 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPG- 455 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTT-
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999996 99999999986421 3579999999999975 999999986321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 157 LPDKMPWSEKRTLVERTIIEMGL-------QDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.+.+ .+.+.++..++ .+..++.+|+ .+.+||||||||++|||||+++|++|+||||||+||+.+
T Consensus 456 ----~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 456 ----ATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp ----CCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred ----CCHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 1111 23333333333 3456777775 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++. +|+|+|+++|++. .+ ..||+|++|++|++++.|+++++..
T Consensus 527 ~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 527 EKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999986 5899999999974 55 4599999999999999999988754
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-45 Score=380.77 Aligned_cols=214 Identities=24% Similarity=0.307 Sum_probs=180.2
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS--- 126 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--- 126 (497)
..|+++||+++|.. +.+.+|+||||+|++||+++|+|||||||||||++|+|+++ + +|+|.++|++....
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 35999999999942 24679999999999999999999999999999999999986 4 89999999875321
Q ss_pred --cCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCCCCCHH
Q 010938 127 --FGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGN------WHLRGISGG 198 (497)
Q Consensus 127 --~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSGG 198 (497)
++.++||||++.+|+ +||+||+.+.. ... ++++.++++.++|.+..++.... ....+||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 357999999999998 59999996431 111 24577899999998766654321 122349999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010938 199 ERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 199 erqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. .++|+|++||+. +....||+|++|++|+++..|+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~ 236 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDS 236 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998864 479999999995 3556799999999999999999
Q ss_pred chhHHH
Q 010938 279 TSAAFE 284 (497)
Q Consensus 279 ~~~~~~ 284 (497)
++++..
T Consensus 237 ~~el~~ 242 (390)
T 3gd7_A 237 ILELYH 242 (390)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.4e-44 Score=422.81 Aligned_cols=250 Identities=26% Similarity=0.399 Sum_probs=204.8
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|++|+.++++.+|..+.... + ...| +..-.|+++||+++|+.+ ++.++|+||||+|++
T Consensus 1043 ~~~~a~~ri~~~l~~~~~~~~~~~----~--~~~~----------~~~g~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~ 1104 (1321)
T 4f4c_A 1043 KATFAGGIIFGMLRKISKIDSLSL----A--GEKK----------KLYGKVIFKNVRFAYPER--PEIEILKGLSFSVEP 1104 (1321)
T ss_dssp HHHHHHHHHHHHHHCCCSSCTTCC----C--SBCC----------CCCCCEEEEEEEECCTTS--CSSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHhhCcccCCCccC----C--CCCC----------CCCCeEEEEEEEEeCCCC--CCCccccceeEEECC
Confidence 467899999999998777543111 0 0001 112249999999999532 345799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||.+||+||||||||||+++|.|+++|. +|+|++||.++.. .+++++||||++.+|+. ||+|||.|+..
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld-- 1178 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD-- 1178 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC--
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC--
Confidence 9999999999999999999999999996 9999999998643 24689999999999987 99999988742
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+...+.+ .+.++++..+ |++..||.||+ ....||||||||++|||||+++|+||+||||||+||+.+
T Consensus 1179 -~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1179 -PSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp -TTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred -CCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHH
Confidence 1223333 3445555544 45678999997 567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
...|.+.|+++.+ |+|+|+++|+++ ....||+|++|++|+++++|++++++.
T Consensus 1253 E~~Iq~~l~~~~~-~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1253 EKVVQEALDRARE-GRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHHTTTSS-SSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHcC-CCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999988654 799999999975 356799999999999999999999875
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.5e-43 Score=418.24 Aligned_cols=249 Identities=26% Similarity=0.350 Sum_probs=205.2
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.|.+|++||.++++.+|..+.....+. ...+....|+++|++++|+.. +++++|+|+||++++
T Consensus 381 ~~~~s~~ri~~~l~~~~~~~~~~~~~~---------------~~~~~~g~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~ 443 (1321)
T 4f4c_A 381 TAQGAASGIYEVLDRKPVIDSSSKAGR---------------KDMKIKGDITVENVHFTYPSR--PDVPILRGMNLRVNA 443 (1321)
T ss_dssp HHHHHHHHHHHHTTTSCCSSCSSSCCC---------------CCCCCCCCEEEEEEEECCSSS--TTSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCccccccccccc---------------cCCCCCCcEEEEEeeeeCCCC--CCCceeeceEEeecC
Confidence 578999999999998887543111000 001112349999999999532 356899999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
|+.+||+||||||||||+++|.|+++|. +|+|.+||.+++.. ++.++||+|++.+|.. ||+|||.|+..
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-- 517 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-- 517 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT--
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc--
Confidence 9999999999999999999999999996 99999999986532 3579999999999987 99999999842
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 157 LPDKMPWSEKRTLVERTIIEMG-------LQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.+ .+.++++..+ |++..||.||+ +...||||||||++||||++++|+|||||||||+||+.+
T Consensus 518 ---~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~t 589 (1321)
T 4f4c_A 518 ---GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589 (1321)
T ss_dssp ---TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTT
T ss_pred ---cchHH----HHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHH
Confidence 12332 2444444433 46778999997 566799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
+..+.+.|+++.+ |+|+|+++|+++ ..+.||+|++|++|++++.|+.+++..
T Consensus 590 e~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 590 EGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 9999999998865 899999999975 467899999999999999999998763
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.6e-42 Score=347.74 Aligned_cols=199 Identities=23% Similarity=0.353 Sum_probs=154.4
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcE
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|+++|+++.. +.+|+|+||++++|++++|+||||||||||||+|+|+++|+ +|+|.++| .+
T Consensus 40 ~l~~~~l~~~~-------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLLG-------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 101 (290)
T ss_dssp ----------C-------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------CE
T ss_pred eEEEEEEEEcC-------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------EE
Confidence 58999999842 56999999999999999999999999999999999999985 99999988 48
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCCCCHHHHHHH
Q 010938 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDC-------ADTVIGNWHLRGISGGERRRV 203 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSGGerqRv 203 (497)
+||+|++.+++. ||+||+. +.. ... ..+.+.++.+++.+. .++.++. .+.+|||||||||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~~------~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv 168 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 168 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TTC------CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Ccc------cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHH
Confidence 999999998885 9999998 421 111 123344555555432 2233332 4578999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhH
Q 010938 204 SIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTL-RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 204 ~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
+|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||++ ..+ ..||++++|++|++++.|+++++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999974 4554 489999999996 455 56999999999999999998876
Q ss_pred H
Q 010938 283 F 283 (497)
Q Consensus 283 ~ 283 (497)
.
T Consensus 246 ~ 246 (290)
T 2bbs_A 246 Q 246 (290)
T ss_dssp H
T ss_pred h
Confidence 4
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.9e-42 Score=406.39 Aligned_cols=251 Identities=27% Similarity=0.390 Sum_probs=199.5
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.|.+|++|+.++++.+|..+.....+.. . ......|+++|++++|+.+ ...++|+||||++++
T Consensus 353 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~-----------~----~~~~g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~ 415 (1284)
T 3g5u_A 353 NARGAAYEVFKIIDNKPSIDSFSKSGHK-----------P----DNIQGNLEFKNIHFSYPSR--KEVQILKGLNLKVKS 415 (1284)
T ss_dssp HHHHHHHHHHHTTSCCCCCSSCCSSCCC-----------C----TTCCCCEEEEEEEECCSST--TSCCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCcCCcccccCCC-----------C----CCCCCeEEEEEEEEEcCCC--CCCcceecceEEEcC
Confidence 5788999999999877764321110000 0 0112249999999999521 235799999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|+ +|+|.+||.++... ++.+|||+|++.+|+. ||+||+.++...
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~- 490 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRED- 490 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSS-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCC-
Confidence 9999999999999999999999999996 99999999985421 3569999999999987 999999998431
Q ss_pred CCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010938 157 LPDKMPWSEKRTLV-----ERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 157 ~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
.+.++..+.+ .+.++ .+.+..||.+|+ .+.+|||||||||+|||||+++|+|||||||||+||+.+..
T Consensus 491 ----~~~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~ 563 (1284)
T 3g5u_A 491 ----VTMDEIEKAVKEANAYDFIM--KLPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA 563 (1284)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHH--HSTTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHH
T ss_pred ----CCHHHHHHHHHHhCcHHHHH--hccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 2222222211 22232 344567888886 66789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 232 FVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.+.+.|+.+. +|+|+|+++|++ +.+ ..||+|++|++|++++.|+.+++..
T Consensus 564 ~i~~~l~~~~-~~~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 564 VVQAALDKAR-EGRTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCH-HHH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHHHc-CCCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999998875 489999999996 455 4599999999999999999998764
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.3e-41 Score=395.65 Aligned_cols=251 Identities=27% Similarity=0.418 Sum_probs=199.7
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
.+.+|++|+.++++.+|..+.....+..+ ......|+++|+++.|+.+ +..++|+||||++++
T Consensus 996 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~---------------~~~~g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~ 1058 (1284)
T 3g5u_A 996 KATVSASHIIRIIEKTPEIDSYSTQGLKP---------------NMLEGNVQFSGVVFNYPTR--PSIPVLQGLSLEVKK 1058 (1284)
T ss_dssp HHHHHHHHHHHHHHSCCSSSSCCSSCCCT---------------TTTSCCEEEEEEEBCCSCG--GGCCSBSSCCEEECS
T ss_pred HHHHHHHHHHHHHcCCCcccccccccccc---------------cCCCCcEEEEEEEEECCCC--CCCeeecceeEEEcC
Confidence 46789999999999877654311100000 0112249999999999421 234699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
||++||+||||||||||+++|+|+++|. +|+|.+||.++.. .++.++||||++.+|+ .||+||+.++....
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~ 1134 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR 1134 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC
Confidence 9999999999999999999999999996 9999999998642 1467999999998886 49999998864321
Q ss_pred CCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 157 LPDKMPWSEKRTLVERTIIEM-------GLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
..+.++. .+.++.. .+.+..||.+|+ .+..|||||||||+|||||+++|+||||||||+|||+.+
T Consensus 1135 ---~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1135 ---VVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206 (1284)
T ss_dssp ---CCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHH
T ss_pred ---CCCHHHH----HHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 1233322 2223322 345678899986 677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
...+.+.|+++. +|+|||+++|++. .+ ..||+|++|++|++++.|+++++..
T Consensus 1207 ~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1207 EKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999998864 5899999999974 55 5699999999999999999988764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.4e-38 Score=348.47 Aligned_cols=206 Identities=24% Similarity=0.282 Sum_probs=178.0
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcC
Q 010938 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...++++|+++.| ++ ..|+++||++++||+++|+|||||||||||++|+|+++|+ +|+|.+ ..
T Consensus 355 ~~~l~~~~l~~~~-----~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~--------~~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDY-----GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW--------DL 417 (607)
T ss_dssp CEEEEECCEEEEC-----SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC--------CC
T ss_pred ceEEEEeceEEEe-----cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE--------ee
Confidence 4569999999988 22 3699999999999999999999999999999999999986 899876 14
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 010938 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 208 (497)
.++|+||+..+++.+||.|++....... ....+++.++++.+||.+..++.+ .+|||||||||+||+|
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAAT 485 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 6999999988878899999887641110 011355788999999988777755 4799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeC--CeEEEEeCchhHHH
Q 010938 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (497)
|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+ .++..+||+|++|++ |+++..|+++++..
T Consensus 486 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999999974 699999999995 688899999999986 88888999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.6e-38 Score=344.22 Aligned_cols=206 Identities=26% Similarity=0.291 Sum_probs=176.8
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcC
Q 010938 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...++++|+++.| ++ ..|+++||++++||++||+||||||||||+++|+|+++|. +|+|.+ ..
T Consensus 285 ~~~l~~~~l~~~~-----~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~--------~~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDY-----GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW--------DL 347 (538)
T ss_dssp CEEEEECCEEEEE-----TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC--------CC
T ss_pred CeEEEEeeEEEEE-----CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE--------Cc
Confidence 3569999999988 22 3699999999999999999999999999999999999986 899875 13
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 010938 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 208 (497)
.++|++|+....+.+||.|++......... ..+.+.++++.++|.+..++.+ ..|||||||||+|||+
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAra 415 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAAT 415 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCCC-------HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHH
Confidence 599999998877889999988754111100 1245778899999987777655 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeC--CeEEEEeCchhHHH
Q 010938 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (497)
|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+ +++..+||+|++|++ |+++..|+++++..
T Consensus 416 L~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999999999974 589999999995 788999999999986 78888999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.7e-38 Score=338.37 Aligned_cols=207 Identities=20% Similarity=0.285 Sum_probs=175.2
Q ss_pred eeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcC
Q 010938 49 SARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 49 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
...++++|+++.| ++ ..|+++|+++++||++||+||||||||||+++|+|+++|+ +|+|.++| .
T Consensus 267 ~~~l~~~~l~~~~-----~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKL-----GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEE-----TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC-------C
T ss_pred cceEEEcceEEEE-----CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-------e
Confidence 4568999999988 22 4688889999999999999999999999999999999996 99998765 3
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 010938 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 208 (497)
.++|++|+....+.+||+||+.+...... .. ....++++++.++|.+..++.+ .+|||||||||+||||
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAra 399 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAAT 399 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhhhcc----ch--hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHH
Confidence 58999999777678899999987532111 01 1234678899999988777755 5799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeC--CeEEEEeCchhHH
Q 010938 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAF 283 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~ 283 (497)
|+.+|+||||||||+|||+.++..+++.|+++++ .|.|||++|||+ +++..+||||++|++ |.....+++.++.
T Consensus 400 L~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999999976 689999999995 789999999999986 5666677766554
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=331.63 Aligned_cols=202 Identities=20% Similarity=0.258 Sum_probs=167.9
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCC-----eEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCc
Q 010938 55 KDLTVMVTLSNGETHNVLEGLTGYAEPG-----TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~G-----e~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
+++++.|+ ..+.+++++||++.+| |+++|+||||||||||+++|+|+++|+ +|+. . ....
T Consensus 350 ~~~~~~y~----~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~~~ 414 (608)
T 3j16_B 350 ASRAFSYP----SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PKLN 414 (608)
T ss_dssp SSSCCEEC----CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CSCC
T ss_pred cceeEEec----CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cCCc
Confidence 45556663 2345789999999999 789999999999999999999999986 7752 1 1246
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 010938 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL 209 (497)
++|++|+.......||+|++...... ... ....++++++.++|.+..++.+ .+|||||||||+|||||
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~----~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRG----QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLAL 482 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSS----TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHT
T ss_pred EEEecccccccCCccHHHHHHHHhhc----ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHH
Confidence 89999997766667999987643211 111 1245678899999988777654 57999999999999999
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeC--CeEEEEeCchhHHH
Q 010938 210 LMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSG--GKTVYFGETSAAFE 284 (497)
Q Consensus 210 ~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~--G~iv~~G~~~~~~~ 284 (497)
+.+|+||||||||+|||+.++..++++|+++.+ .|.|||++|||+ .++..+||||++|++ |+++..|+++++..
T Consensus 483 ~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999999999864 699999999995 789999999999986 89999999998875
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.9e-35 Score=335.06 Aligned_cols=201 Identities=22% Similarity=0.311 Sum_probs=167.3
Q ss_pred ceeEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCc
Q 010938 48 VSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSF 127 (497)
Q Consensus 48 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~ 127 (497)
....|...|+++.| +.+.+|+|+||++++|++++|+||||||||||||+|+| |+| +|.+....
T Consensus 432 ~~~~L~~~~ls~~y-----g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~- 494 (986)
T 2iw3_A 432 EGEDLCNCEFSLAY-----GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEE- 494 (986)
T ss_dssp SSCEEEEEEEEEEE-----TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTT-
T ss_pred ccceeEEeeEEEEE-----CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccc-
Confidence 34467888999999 45789999999999999999999999999999999995 222 34332111
Q ss_pred CcEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHH
Q 010938 128 GTAAYVTQDD-NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 128 ~~i~yv~Q~~-~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~I 205 (497)
..++|++|+. .+++.+||.|++.+ ... .. ++++.++++.+||. +..++.+ .+|||||||||+|
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaL 559 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLAL 559 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHH
T ss_pred eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHH
Confidence 2478999984 67889999999976 111 11 45688999999995 5666655 4699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-EEeCchhHHH
Q 010938 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTV-YFGETSAAFE 284 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 284 (497)
||+|+.+|+||||||||+|||+.++..+.+.|++ .|.|||++||+. .++.++||+|++|++|+++ +.|+.+++..
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999999999988 589999999995 7888999999999999997 6899887654
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.3e-36 Score=332.87 Aligned_cols=208 Identities=27% Similarity=0.316 Sum_probs=140.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEe
Q 010938 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------------------DALSSRLASNAF----LSGTILLNGHK 122 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL---------------------~~L~G~~~~~~~----~~G~I~~~G~~ 122 (497)
.+++|+||||+|++||++||+||||||||||+ +++.|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 46799999999999999999999999999998 888888777411 14667777764
Q ss_pred CCC-CcCcEEEEcCCCC-------------------CCCCCCHHHHHHHHhhccCCCCCCH------HHHHHHHHHHHHH
Q 010938 123 TKL-SFGTAAYVTQDDN-------------------LIGTLTVRETISYSARLRLPDKMPW------SEKRTLVERTIIE 176 (497)
Q Consensus 123 ~~~-~~~~i~yv~Q~~~-------------------l~~~lTV~e~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~ 176 (497)
... ....++||+|... .++.+||+||+.+............ .+..+ ...+++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRD-RLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHH-HHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHH-HHHHHHH
Confidence 321 1234455555432 2467899999988543221110000 00111 1235888
Q ss_pred cCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Q 010938 177 MGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ 253 (497)
Q Consensus 177 lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~--lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~ 253 (497)
+||.+. .++.+ .+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 46644 5799999999999999999998 999999999999999999999999998889999999999
Q ss_pred CChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010938 254 PSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 254 ~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
+ .. ...||+|++| ++|++++.|+++++.
T Consensus 264 ~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 E-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 5 44 4569999999 899999999998875
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.7e-36 Score=328.23 Aligned_cols=194 Identities=25% Similarity=0.323 Sum_probs=157.4
Q ss_pred EEE-EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 010938 52 LTW-KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNGH 121 (497)
Q Consensus 52 l~~-~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I---------~~~G~ 121 (497)
.++ +||++.|. +...+|+||| ++++||++||+||||||||||||+|+|+++|+ +|++ .++|.
T Consensus 21 ~~~~~~ls~~yg----~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYG----VNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECS----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEEC----CccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCc
Confidence 455 58899882 2225899999 99999999999999999999999999999886 7875 45665
Q ss_pred eCC-------CCcCcEEEEcCCCCCCCC---CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 010938 122 KTK-------LSFGTAAYVTQDDNLIGT---LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (497)
Q Consensus 122 ~~~-------~~~~~i~yv~Q~~~l~~~---lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 191 (497)
+.. .....+++++|....++. .||.|++.... ..++++++++.+||.+..++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~---- 156 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREI---- 156 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBG----
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCCh----
Confidence 421 112357899997544332 38999886421 0134778999999988777755
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010938 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 192 ~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
.+|||||||||+||+||+.+|++|||||||++||+.++..+++.|++++++|.|||++||+. .++..+||+|++|++|
T Consensus 157 -~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 157 -QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGE 234 (538)
T ss_dssp -GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEE
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCc
Confidence 47999999999999999999999999999999999999999999999988899999999995 6888999999999865
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.7e-36 Score=331.91 Aligned_cols=192 Identities=26% Similarity=0.346 Sum_probs=157.6
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEE---------EECCEeCCC
Q 010938 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI---------LLNGHKTKL 125 (497)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I---------~~~G~~~~~ 125 (497)
+||++.|. +...+|+|+| ++++||+++|+||||||||||||+|+|+++|+ +|++ .++|.+...
T Consensus 95 ~~ls~~yg----~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYG----VNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECS----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEEC----CCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhh
Confidence 78888882 2225899999 99999999999999999999999999999986 7875 456654211
Q ss_pred -------CcCcEEEEcCCCCCCC---CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCC
Q 010938 126 -------SFGTAAYVTQDDNLIG---TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGI 195 (497)
Q Consensus 126 -------~~~~i~yv~Q~~~l~~---~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 195 (497)
....+++++|....++ ..||.|++.... . .++++++++.+||.+..++.+ .+|
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~------~------~~~~~~~L~~lgL~~~~~~~~-----~~L 229 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD------E------VGKFEEVVKELELENVLDREL-----HQL 229 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC------C------SSCHHHHHHHTTCTTGGGSBG-----GGC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH------H------HHHHHHHHHHcCCCchhCCCh-----hhC
Confidence 1235789998743322 139999986421 0 134778999999988887765 479
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010938 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 196 SGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+ ..+..+||+|++|+++.
T Consensus 230 SGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999999999999999999988899999999995 67889999999998653
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.6e-35 Score=335.61 Aligned_cols=208 Identities=24% Similarity=0.343 Sum_probs=163.8
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCc
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
..|+++|+++.|.. ..+++|+|+||++++|++++|+||||||||||||+|+|+++|+ +|+|+++|. ..
T Consensus 670 ~mL~v~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 46999999998831 1367999999999999999999999999999999999999986 999999863 25
Q ss_pred EEEEcCCCCC----CCCCCHHHHHHHHhhcc------------CC-----------------------------------
Q 010938 130 AAYVTQDDNL----IGTLTVRETISYSARLR------------LP----------------------------------- 158 (497)
Q Consensus 130 i~yv~Q~~~l----~~~lTV~e~l~~~~~~~------------~~----------------------------------- 158 (497)
++|++|++.. ....|+.+++.+..... ..
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8999997521 23458888876532100 00
Q ss_pred -----------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCcc--ccc
Q 010938 159 -----------------DKM--------P--------------------------WSEKRTLVERTIIEMGLQDC--ADT 185 (497)
Q Consensus 159 -----------------~~~--------~--------------------------~~~~~~~v~~~l~~lgL~~~--~~~ 185 (497)
..+ + .....++++++++.+||.+. .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 000 0 00013457889999999752 455
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE
Q 010938 186 VIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 186 ~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v 265 (497)
.+ ++|||||||||+|||+|+.+|+||||||||+|||+.+...+++.|+++ |.|||++||++ +++..+||++
T Consensus 898 ~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrV 968 (986)
T 2iw3_A 898 RI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEV 968 (986)
T ss_dssp CG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEE
T ss_pred Cc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEE
Confidence 44 579999999999999999999999999999999999999999888665 67999999995 6788999999
Q ss_pred EEeeCCeEEEEeC
Q 010938 266 YLLSGGKTVYFGE 278 (497)
Q Consensus 266 ~~L~~G~iv~~G~ 278 (497)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.1e-34 Score=318.63 Aligned_cols=195 Identities=26% Similarity=0.322 Sum_probs=149.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHH----------------------cCCCCCCCceeEEEECCEeCCCC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS----------------------SRLASNAFLSGTILLNGHKTKLS 126 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~----------------------G~~~~~~~~~G~I~~~G~~~~~~ 126 (497)
..+|+||||+|++||++||+||||||||||+++|+ |+..+ .|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCC
Confidence 56899999999999999999999999999998754 22222 46788887653210
Q ss_pred ----------------------------------------------cCcEEEEcCCCCCCC-------------------
Q 010938 127 ----------------------------------------------FGTAAYVTQDDNLIG------------------- 141 (497)
Q Consensus 127 ----------------------------------------------~~~i~yv~Q~~~l~~------------------- 141 (497)
....|+++|+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 001234444333322
Q ss_pred -------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHH
Q 010938 142 -------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 142 -------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~ 207 (497)
.+||.||+.+.... . ...++.+.++.+||.. ..++ ++.+|||||||||+|||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iAr 556 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAA 556 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHH
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHHH
Confidence 47999999886421 1 1234567888899864 2344 45679999999999999
Q ss_pred HHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeC
Q 010938 208 EILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGE 278 (497)
Q Consensus 208 aL~~~p---~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~ 278 (497)
||+.+| +||||||||+|||+.++..+++.|++++++|.|||++|||+ .. ...||+|++| ++|++++.|+
T Consensus 557 aL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 557 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp HHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred HHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEecC
Confidence 999987 59999999999999999999999999988899999999996 44 4679999999 8999999999
Q ss_pred chhHH
Q 010938 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
++++.
T Consensus 635 ~~~~~ 639 (670)
T 3ux8_A 635 PEEVA 639 (670)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.9e-33 Score=303.65 Aligned_cols=196 Identities=26% Similarity=0.298 Sum_probs=149.1
Q ss_pred eEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCC
Q 010938 56 DLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI-----------LLNGHKTK 124 (497)
Q Consensus 56 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I-----------~~~G~~~~ 124 (497)
|+++.|. .....|++++ .+++||++||+||||||||||||+|+|+++|+ +|+| .+.|....
T Consensus 82 ~~~~~Y~----~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYS----ANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQ 153 (608)
T ss_dssp TEEEECS----TTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHH
T ss_pred CeEEEEC----CCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhh
Confidence 3455552 2345677777 68999999999999999999999999999996 7887 23333210
Q ss_pred C-----CcC--cEEEEcCCCCC------CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 010938 125 L-----SFG--TAAYVTQDDNL------IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWH 191 (497)
Q Consensus 125 ~-----~~~--~i~yv~Q~~~l------~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 191 (497)
. ..+ ...+.+|.... -+..++.+++.... .. ..++++++++.+||.+..++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~---- 219 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDI---- 219 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCT----
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCCh----
Confidence 0 001 12334443211 12235666554321 01 1246888999999998888755
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010938 192 LRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 192 ~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++ .++..+||+|++|++|
T Consensus 220 -~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~ 297 (608)
T 3j16_B 220 -EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGV 297 (608)
T ss_dssp -TTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESC
T ss_pred -HHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999988899999999995 7899999999999987
Q ss_pred eEEE
Q 010938 272 KTVY 275 (497)
Q Consensus 272 ~iv~ 275 (497)
..++
T Consensus 298 ~~~~ 301 (608)
T 3j16_B 298 PSVY 301 (608)
T ss_dssp TTTE
T ss_pred cccc
Confidence 6544
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.6e-32 Score=296.78 Aligned_cols=172 Identities=20% Similarity=0.259 Sum_probs=139.1
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCCC-------CcCcEEEEcCC----
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI-----------LLNGHKTKL-------SFGTAAYVTQD---- 136 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I-----------~~~G~~~~~-------~~~~i~yv~Q~---- 136 (497)
.++||++||+||||||||||||+|+|+++|+ +|+| .++|.+... ....+....|.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 5699999999999999999999999999996 8988 567764311 11224444444
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEE
Q 010938 137 DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL 216 (497)
Q Consensus 137 ~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ll 216 (497)
+.++. .||++++.... .+++++++++.+|+.+..++.+ .+|||||||||+||+||+.+|++|
T Consensus 99 ~~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~Qrv~iA~aL~~~p~il 160 (538)
T 3ozx_A 99 SKFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDA-----NILSGGGLQRLLVAASLLREADVY 160 (538)
T ss_dssp GTTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEE
Confidence 23333 38888764321 0124678899999988888765 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeE
Q 010938 217 FLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 217 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~i 273 (497)
||||||++||+.++..+.+.|+++++ |+|||+++|++ .++..+||+|++|++|..
T Consensus 161 llDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 161 IFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETT
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcc
Confidence 99999999999999999999999976 89999999995 789999999999987643
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1.8e-31 Score=300.53 Aligned_cols=208 Identities=25% Similarity=0.310 Sum_probs=158.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHH-cCC---------CCCC--Ccee---
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRL---------ASNA--FLSG--- 114 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~-G~~---------~~~~--~~~G--- 114 (497)
..|+++|++ ...|+|||++|++|+++||+|+||||||||+++|+ |.+ .++. ...|
T Consensus 628 ~~L~v~~l~----------~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGAR----------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEEC----------SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCc----------ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 357787764 13699999999999999999999999999999854 211 2221 1224
Q ss_pred ---EEEECCEeCCCC------------------------cCcEEEEcCCCCCC----------------------C----
Q 010938 115 ---TILLNGHKTKLS------------------------FGTAAYVTQDDNLI----------------------G---- 141 (497)
Q Consensus 115 ---~I~~~G~~~~~~------------------------~~~i~yv~Q~~~l~----------------------~---- 141 (497)
.|.++|.++... .+..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 588888764210 02246777743221 1
Q ss_pred ----------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccC
Q 010938 142 ----------------------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192 (497)
Q Consensus 142 ----------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 192 (497)
.+||.|++.|.... .. ..++.++|+.+||.. ..++. +
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~~gL~~~~l~~~-----~ 843 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI-------PK--IKRKLETLYDVGLGYMKLGQP-----A 843 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC-------HH--HHHHHHHHHHTTCSSSBTTCC-----G
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc-------hh--HHHHHHHHHHcCCCcccccCc-----h
Confidence 46788888764321 11 234568899999976 45554 4
Q ss_pred CCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe-
Q 010938 193 RGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL- 268 (497)
Q Consensus 193 ~~LSGGerqRv~IA~aL~~~p---~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L- 268 (497)
.+|||||||||+||++|+.+| +||||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..||+|++|
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~ 921 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLG 921 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEc
Confidence 579999999999999999865 99999999999999999999999999988899999999995 454 689999999
Q ss_pred -----eCCeEEEEeCchhHH
Q 010938 269 -----SGGKTVYFGETSAAF 283 (497)
Q Consensus 269 -----~~G~iv~~G~~~~~~ 283 (497)
++|++++.|+++++.
T Consensus 922 p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 922 PEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCCCCEEEEecCHHHHH
Confidence 789999999998764
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=9.7e-31 Score=296.16 Aligned_cols=200 Identities=26% Similarity=0.339 Sum_probs=152.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeCCC-----
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLL---------DALSSRLASNA---FLS------GTILLNGHKTKL----- 125 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL---------~~L~G~~~~~~---~~~------G~I~~~G~~~~~----- 125 (497)
...|+|||++|++|++++|+|+||||||||+ +.+.+...+.. ..+ +.+.+++.++..
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 44544332210 012 334555433210
Q ss_pred -----------------------------------------CcCcEEEEcCCCCCCC-----------------------
Q 010938 126 -----------------------------------------SFGTAAYVTQDDNLIG----------------------- 141 (497)
Q Consensus 126 -----------------------------------------~~~~i~yv~Q~~~l~~----------------------- 141 (497)
..+..||+.++..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0012467777766655
Q ss_pred ---------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhC
Q 010938 142 ---------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR 212 (497)
Q Consensus 142 ---------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~ 212 (497)
.+||.|++.|.... ....++.++|+.+||.... ++ +.+.+|||||||||+|||||+++
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhC
Confidence 36888888875321 1234577899999996421 22 25568999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010938 213 P---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 213 p---~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
| +||||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 79999999999999999999999999988899999999995 454 569999999 899999999999875
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=4e-31 Score=297.06 Aligned_cols=208 Identities=30% Similarity=0.333 Sum_probs=156.1
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHH-HHcCCC-------C--C----------
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDA-LSSRLA-------S--N---------- 109 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~-L~G~~~-------~--~---------- 109 (497)
..|+++|+++ .+|+|||++|++|+++||+|+||||||||++. |+|.+. + +
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4588999864 25999999999999999999999999999996 765431 1 0
Q ss_pred ---CCcee-------EEEECCEeCCCCcC------------------------cEEE----------------------E
Q 010938 110 ---AFLSG-------TILLNGHKTKLSFG------------------------TAAY----------------------V 133 (497)
Q Consensus 110 ---~~~~G-------~I~~~G~~~~~~~~------------------------~i~y----------------------v 133 (497)
...+| .|.++|.++....+ ..|| +
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 01367 78899876421100 0122 2
Q ss_pred cCCCCCCC------------------------C--------CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc
Q 010938 134 TQDDNLIG------------------------T--------LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD 181 (497)
Q Consensus 134 ~Q~~~l~~------------------------~--------lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 181 (497)
..+..+++ . +|+.|++.|... . ...+++.++|+.+||..
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~---~~~~~~~~~L~~~gL~~ 721 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD------E---SAIFRALDTLREVGLGY 721 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------S---HHHHHHHHHHHHTTCTT
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------c---hHHHHHHHHHHHcCCCc
Confidence 11111122 2 345555544211 1 12246788999999976
Q ss_pred c-ccccccCccCCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChH
Q 010938 182 C-ADTVIGNWHLRGISGGERRRVSIALEILMR---PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE 257 (497)
Q Consensus 182 ~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~---p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~ 257 (497)
. .++ .+.+|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|++ ++
T Consensus 722 ~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~ 795 (842)
T 2vf7_A 722 LRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QV 795 (842)
T ss_dssp SBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH
T ss_pred ccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HH
Confidence 3 344 4457999999999999999996 799999999999999999999999999998899999999995 56
Q ss_pred HHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010938 258 VFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 258 i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
+ ..||+|++| ++|++++.|+++++.
T Consensus 796 i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 796 V-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 6 889999999 799999999988753
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=1.2e-30 Score=294.80 Aligned_cols=209 Identities=25% Similarity=0.323 Sum_probs=155.3
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHH-c----CCCCCCCcee----------
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-S----RLASNAFLSG---------- 114 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~-G----~~~~~~~~~G---------- 114 (497)
..|+++|++ ..+|+|||++|++|+++||+|+||||||||+++|+ | .+.+.....|
T Consensus 646 ~~L~v~~l~----------~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~ 715 (993)
T 2ygr_A 646 RQLTVVGAR----------EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDY 715 (993)
T ss_dssp SEEEEEEEC----------STTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTT
T ss_pred ceEEEecCc----------cccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccc
Confidence 357888874 12699999999999999999999999999999853 2 2211100123
Q ss_pred ---EEEECCEeCCCC------------------------cCcEEEEcCCCCCC----------------------C----
Q 010938 115 ---TILLNGHKTKLS------------------------FGTAAYVTQDDNLI----------------------G---- 141 (497)
Q Consensus 115 ---~I~~~G~~~~~~------------------------~~~i~yv~Q~~~l~----------------------~---- 141 (497)
.|.+++.++... .+..||++|...+. +
T Consensus 716 ~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~ 795 (993)
T 2ygr_A 716 LDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYV 795 (993)
T ss_dssp CSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEE
T ss_pred cceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhcccccee
Confidence 355555443100 02246666643221 1
Q ss_pred ----------------------------CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccC
Q 010938 142 ----------------------------TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHL 192 (497)
Q Consensus 142 ----------------------------~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 192 (497)
.+||.|++.|.... .. ..++.++|+.+||.. ..++. +
T Consensus 796 ~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~-------~~--~~~~~~~L~~lgL~~~~l~~~-----~ 861 (993)
T 2ygr_A 796 PCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI-------AG--VHRYLRTLVDVGLGYVRLGQP-----A 861 (993)
T ss_dssp ECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC-------HH--HHHHHHHHHHTTGGGSBTTCC-----G
T ss_pred eehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc-------hH--HHHHHHHHHHcCCCcccccCc-----c
Confidence 35777777764321 11 234568899999976 44543 4
Q ss_pred CCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe-
Q 010938 193 RGISGGERRRVSIALEILMRP---RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL- 268 (497)
Q Consensus 193 ~~LSGGerqRv~IA~aL~~~p---~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L- 268 (497)
.+|||||||||+||++|+.+| +||||||||+|||+.+...+++.|++++++|.|||+++|++ ..+ ..||+|++|
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~ 939 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL-DVI-KTSDWIIDLG 939 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEC
Confidence 579999999999999999865 99999999999999999999999999988899999999995 454 789999999
Q ss_pred -----eCCeEEEEeCchhHHH
Q 010938 269 -----SGGKTVYFGETSAAFE 284 (497)
Q Consensus 269 -----~~G~iv~~G~~~~~~~ 284 (497)
++|++++.|+++++..
T Consensus 940 p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 940 PEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp SSSTTSCSEEEEEECHHHHHH
T ss_pred CCcCCCCCEEEEecCHHHHHh
Confidence 7899999999988653
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=3.1e-29 Score=262.39 Aligned_cols=204 Identities=23% Similarity=0.265 Sum_probs=146.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC-----------------------------------CCce
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN-----------------------------------AFLS 113 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~-----------------------------------~~~~ 113 (497)
..+++++++++.+| +++|+|||||||||||++|+++..+. ...+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35799999999999 99999999999999999998776421 0126
Q ss_pred eEEEECCEeCCC------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC-----------------------CCCC---
Q 010938 114 GTILLNGHKTKL------SFGTAAYVTQDDNLIGTLTVRETISYSARLRL-----------------------PDKM--- 161 (497)
Q Consensus 114 G~I~~~G~~~~~------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~-----------------------~~~~--- 161 (497)
|.+++||++... ....+++++|++.++.. +..+...|.-.... ....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999998532 12348999999876643 55555444321100 0000
Q ss_pred -C------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 010938 162 -P------------------------------WSEKRTLVERTIIEMGLQDCA----------------DT---VIGN-- 189 (497)
Q Consensus 162 -~------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~-- 189 (497)
. .......+.+.++.+++.... +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 001123344556666664310 00 1110
Q ss_pred ----ccCCC-CCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcC
Q 010938 190 ----WHLRG-ISGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELF 262 (497)
Q Consensus 190 ----~~~~~-LSGGerqRv~IA~aL~~~p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~ 262 (497)
..++. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++ ++...|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 11122 6999999999999999999 9999999999999999999999999998 589999999995 456889
Q ss_pred CeEEEe----eCCeEEEEe
Q 010938 263 DRLYLL----SGGKTVYFG 277 (497)
Q Consensus 263 D~v~~L----~~G~iv~~G 277 (497)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-32 Score=290.63 Aligned_cols=186 Identities=11% Similarity=0.074 Sum_probs=147.8
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee-E-EEECCEeCCCCcCcEEEEcCCCC---CCCCCCHHH
Q 010938 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-T-ILLNGHKTKLSFGTAAYVTQDDN---LIGTLTVRE 147 (497)
Q Consensus 73 ~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G-~-I~~~G~~~~~~~~~i~yv~Q~~~---l~~~lTV~e 147 (497)
.++|+++++|++++|+||||||||||+|+|+|+..|. +| + |++||.. .+.++|+||+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCCc----cCCeeeeccchhhcccccccchhh
Confidence 4788999999999999999999999999999999885 89 8 9999832 356899999984 445679999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH--HHhCCCE----EEEeC-
Q 010938 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE--ILMRPRL----LFLDE- 220 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a--L~~~p~l----llLDE- 220 (497)
|+ |+....... . ..+++.++++.+||.+..+ +.+|||||||||+|||+ |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 98 654321110 0 0123455677788876554 34799999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCCh-----HHHhcCCe-----EEEee-CCeEEEEeCchhHH
Q 010938 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSS-----EVFELFDR-----LYLLS-GGKTVYFGETSAAF 283 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~-----~i~~~~D~-----v~~L~-~G~iv~~G~~~~~~ 283 (497)
||++||+. ...+.+++++ .|.|+|+++|+..+ ++..+||+ |++|+ +|+++ .|+++++.
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 99999999 5555555443 37899999999641 56689999 99999 99999 89887653
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=5.8e-26 Score=234.69 Aligned_cols=84 Identities=33% Similarity=0.467 Sum_probs=77.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010938 190 WHLRGISGGERRRVSIALEIL------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 190 ~~~~~LSGGerqRv~IA~aL~------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
..+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.++|.|||++||++ . ....||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~-~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-E-FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-H-HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-H-HHHhCC
Confidence 356789999999999999999 79999999999999999999999999999988899999999995 3 478899
Q ss_pred eEEEeeCCeEEE
Q 010938 264 RLYLLSGGKTVY 275 (497)
Q Consensus 264 ~v~~L~~G~iv~ 275 (497)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999864
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=1.2e-29 Score=242.47 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=100.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE--eCCCCcCcEEEEcCCCCCCCCCCH
Q 010938 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH--KTKLSFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~--~~~~~~~~i~yv~Q~~~l~~~lTV 145 (497)
.+.+|+|| ++|++++|+|||||||||||++|+|+ +|+ +|+|..... +.....+.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 46789996 89999999999999999999999999 874 788742111 1112235699999975
Q ss_pred HHHH-HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 010938 146 RETI-SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (497)
Q Consensus 146 ~e~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDE 220 (497)
+||+ .+.. .... ... .+.++++++. | + ||||||+|||||+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~~--~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRD--MVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTT--TSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH--hcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 3444 2211 1110 000 1234455543 2 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010938 221 PTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 221 PTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
||+| ++..+++.|+++ ++|+||| +|||+
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~ 158 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDI 158 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC-
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCH
Confidence 9999 889999999988 6689999 99995
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.6e-25 Score=227.51 Aligned_cols=88 Identities=28% Similarity=0.258 Sum_probs=73.7
Q ss_pred cCCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeE-
Q 010938 191 HLRGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRL- 265 (497)
Q Consensus 191 ~~~~LSGGerqRv~IA~aL~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v- 265 (497)
.+..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|+++. +|.|||++||++ ++.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 34689999999999999997 5889999999999999999999999999985 489999999995 467899987
Q ss_pred -EEeeCCeE-EEEeCchh
Q 010938 266 -YLLSGGKT-VYFGETSA 281 (497)
Q Consensus 266 -~~L~~G~i-v~~G~~~~ 281 (497)
++|.+|.. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 77887754 44444444
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=1.2e-26 Score=214.45 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=101.4
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCC-CCCCHHHHHHHH
Q 010938 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI-GTLTVRETISYS 152 (497)
Q Consensus 74 ~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~-~~lTV~e~l~~~ 152 (497)
||||++++||+++|+||||||||||++++.+ |...+++. ...++++|++.-. ..-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSD------FCRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHH------HHHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccH------HHHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999998642 11111111 0125666664210 0001112111
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----
Q 010938 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA---- 228 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~---- 228 (497)
... ......|.....+. ....|||||||++||++++.+|++|+|||||++||+.
T Consensus 64 ---------------~~~-~~~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIV-SKRLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHH-HHHHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHH-HHHHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 111 12223454433332 2346999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhCCCEEEEEeCCCChHHH
Q 010938 229 ------------AAFFVTQTLRCLSRDGRTVIASIHQPSSEVF 259 (497)
Q Consensus 229 ------------~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~ 259 (497)
....+.+.|++++++|.|+|++||++ +++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EEVE 163 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HHHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HHhh
Confidence 55889999999877799999999995 4544
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.92 E-value=4.2e-28 Score=253.65 Aligned_cols=171 Identities=17% Similarity=0.166 Sum_probs=138.5
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcC
Q 010938 69 HNVLEGLTGYAEPGT--------------------LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFG 128 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge--------------------~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~ 128 (497)
+.+|++||+++++|+ ++||+||||||||||+|+|+|+.+|. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e
Confidence 568999999999999 99999999999999999999999886 899999997642 1
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH--HHHHHHHH
Q 010938 129 TAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG--ERRRVSIA 206 (497)
Q Consensus 129 ~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG--erqRv~IA 206 (497)
.+|++|++ .++.+|+.|++.++.. +..++++++.+++.+. +.. +. |||| |+||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~-~~~-----~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY-DFF-----II-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC-SEE-----EE-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc-CCe-----EE-eCCCCccHHHHHHH
Confidence 27899985 5778899988765421 1236788999998754 222 22 9999 99999999
Q ss_pred HHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CEEEEEeCCCCh-HHHhcCCeEE
Q 010938 207 LEILM----------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLS-----RDG----RTVIASIHQPSS-EVFELFDRLY 266 (497)
Q Consensus 207 ~aL~~----------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvI~~tH~~~~-~i~~~~D~v~ 266 (497)
++|++ +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+... .+.++||+|.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999984 333 678899998642 2777777764
No 71
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.92 E-value=2.3e-30 Score=260.62 Aligned_cols=200 Identities=16% Similarity=0.183 Sum_probs=146.8
Q ss_pred chhhhHHHHHHHHhcCCCCcccccCCCCCcchhhhhhhcccccCCCceeEEEEEeEEEEEEccCCcccceeeceEEEEeC
Q 010938 2 RDSAASNVIMEIEASKPAGNSIVVGGLSPLSETIWKEKINTEFSGDVSARLTWKDLTVMVTLSNGETHNVLEGLTGYAEP 81 (497)
Q Consensus 2 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~ 81 (497)
+|.+|++|+.++++.++.... + .. .|.. ....|+++||++.| . +.+|+++|++|++
T Consensus 70 ~a~~a~~ri~~~l~~~~~~~~---~-~~-----~~~~---------~~~~i~~~~vs~~y-----~-~~vL~~vsl~i~~ 125 (305)
T 2v9p_A 70 RAETQALSMPAYIKARCKLAT---G-EG-----SWKS---------ILTFFNYQNIELIT-----F-INALKLWLKGIPK 125 (305)
T ss_dssp HHHHHHSCHHHHHHHHHHHCC---S-SC-----CTHH---------HHHHHHHTTCCHHH-----H-HHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhccccccC---C-CC-----cccc---------cCCeEEEEEEEEEc-----C-hhhhccceEEecC
Confidence 577899999999986543211 0 00 0110 01126777888877 2 5699999999999
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHH-HHHHHhhccCCCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE-TISYSARLRLPDK 160 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e-~l~~~~~~~~~~~ 160 (497)
|++++|+||||||||||+++|+|++ +|+| ++|++|++.+++. |++| |+.+...
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I-------------~~~v~q~~~lf~~-ti~~~ni~~~~~------ 179 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL------GGSV-------------LSFANHKSHFWLA-SLADTRAALVDD------ 179 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH------TCEE-------------ECGGGTTSGGGGG-GGTTCSCEEEEE------
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc------CceE-------------EEEecCccccccc-cHHHHhhccCcc------
Confidence 9999999999999999999999997 4777 3567888888875 7886 7766421
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010938 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
.+. .+.+.++.+ |.+..+ +..|||||||| ||||+.+|+||| ||+||+.++..+..
T Consensus 180 ~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----- 234 (305)
T 2v9p_A 180 ATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----- 234 (305)
T ss_dssp ECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----
T ss_pred ccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----
Confidence 111 345556654 444444 24799999999 999999999999 99999999888762
Q ss_pred HhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHHHh
Q 010938 241 SRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFFAQ 288 (497)
Q Consensus 241 ~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~ 288 (497)
.+|++. ....||+| +|++|++++.|+.+++...|..
T Consensus 235 ---------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 235 ---------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp ---------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred ---------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 188853 46789999 9999999999999988555544
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.90 E-value=5.2e-25 Score=205.23 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=101.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe---CC--CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK---TK--LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~---~~--~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
.++|+||||||||||+++|+|++. |.++|.+ .. ...+.++|++|+. ++.+++ + ..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc--
Confidence 589999999999999999999874 2233332 11 2235689999975 222222 1 1100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHH
Q 010938 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE-----ILMRPRLLFLDE--PTSGLDSAAAF 231 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a-----L~~~p~lllLDE--PTsgLD~~~~~ 231 (497)
. .-.+..+. ++..||||||||++||++ |+.+|++++||| ||++||+....
T Consensus 64 --~----------------~~~~~~~~-----~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~ 120 (178)
T 1ye8_A 64 --F----------------TSKKLVGS-----YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRD 120 (178)
T ss_dssp --C----------------CCSSEETT-----EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHH
T ss_pred --C----------------Cccccccc-----cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHH
Confidence 0 00012222 455799999999999996 999999999999 99999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeC--CCChHHHhcCCeEEEeeCCeEEE
Q 010938 232 FVTQTLRCLSRDGRTVIASIH--QPSSEVFELFDRLYLLSGGKTVY 275 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~~tH--~~~~~i~~~~D~v~~L~~G~iv~ 275 (497)
.+.+.+++ .+.|+|+++| +....+..+||+ .+|+++.
T Consensus 121 ~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 121 LVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 99888865 4678899986 225678888887 4566654
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.89 E-value=1.3e-27 Score=227.31 Aligned_cols=180 Identities=16% Similarity=0.099 Sum_probs=120.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CCcCcEEEEcCCCCCCCCCCHH
Q 010938 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-LSFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-~~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
...+++| .++++|++++|+||||||||||+|+|+|+++. ..+.+.+.+.+.. ...+.++|++|++.+++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 4567888 69999999999999999999999999999852 2333322222211 1235689999998888888887
Q ss_pred HHHHHHhhccC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEE
Q 010938 147 ETISYSARLRL---PDKMPWSEKRTLVERT------IIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLF 217 (497)
Q Consensus 147 e~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lll 217 (497)
+++........ ....+..+.++++++. ++.+|+.+..+. +++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHH
Confidence 77643211100 0012333444455554 444555444443 334566 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee
Q 010938 218 LDEPTSGL----DSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 218 LDEPTsgL----D~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|||||+|| |+..+..+.+.++++.+ .|.|+|++||++ +++..+||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999975 589999999995 78999999999984
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=6.5e-25 Score=221.12 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=132.9
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cCcEEEEcCCCC-C
Q 010938 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDN-L 139 (497)
Q Consensus 72 L~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~-l 139 (497)
++++|+++++|++++|+||||||||||++.|+|++++. +|+|.++|.+.... +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 35789999999999999999999999999999999875 89999999874211 135899999988 8
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCC--EEE
Q 010938 140 IGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLF 217 (497)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~--lll 217 (497)
+|.+||+|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEE
Confidence 89999999999864311 00 12455678776655544 4699 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCC--------hHHHhcCCeEEEeeCCeE
Q 010938 218 LDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPS--------SEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 218 LDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~--------~~i~~~~D~v~~L~~G~i 273 (497)
|| ||+|||+.++ ++++.+ .|.|+|++||... +.+....+.|..+..|+.
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99 9999999865 345553 5899999999421 234456678888887754
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.86 E-value=3.2e-24 Score=212.82 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=96.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL--SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
.++|+||||||||||+|+|+|+..|. +|+|.++|.+... ..+.++|++|++.+++.+||.||+.|+..... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--EN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HH
Confidence 48999999999999999999999885 8999999987532 24679999999999999999999998864431 11
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010938 162 PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (497)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~ 241 (497)
.+ +.+.+.+. .+..+.. +.+||||||||++|||+++. ++|+|||+.|||+.. .+.++.+.
T Consensus 79 ~~----~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 CW----EPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp CS----HHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred HH----HHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 11 12223322 2222332 34699999999999999886 999999999999987 55666666
Q ss_pred hCCCEEEEEeCCC
Q 010938 242 RDGRTVIASIHQP 254 (497)
Q Consensus 242 ~~g~tvI~~tH~~ 254 (497)
+. .+||+++|..
T Consensus 139 ~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 KV-VNIIPVIAKA 150 (270)
T ss_dssp TT-SEEEEEETTG
T ss_pred hc-CcEEEEEecc
Confidence 66 8999999883
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.86 E-value=1.2e-23 Score=216.39 Aligned_cols=171 Identities=17% Similarity=0.153 Sum_probs=133.3
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cCcEEEEcCCCC-CC
Q 010938 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDN-LI 140 (497)
Q Consensus 73 ~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~-l~ 140 (497)
..+|+++++|++++|+||||||||||++.|+|++++. +|+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999999875 89999999874210 235899999988 88
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCC--EEEE
Q 010938 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFL 218 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~--lllL 218 (497)
|.+||+|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++|||+|+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 8899999999874321 00 12455677776655544 4699 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCC--------ChHHHhcCCeEEEeeCCeE
Q 010938 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQP--------SSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~--------~~~i~~~~D~v~~L~~G~i 273 (497)
| ||+|||+.++. +++.+ .|.|+|++||.. .+.+....+.|..+..|+.
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999988653 44543 589999999941 1234456677887777753
No 77
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.86 E-value=5.1e-25 Score=232.53 Aligned_cols=189 Identities=15% Similarity=0.108 Sum_probs=149.9
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH---KTKL-- 125 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~~~-- 125 (497)
.++++|+++.|. ....+|+++ +++.+|++++|+|||||||||||++|+|+.+++ +|.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~----tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLD----TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCC----CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecC----CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHH
Confidence 477888888873 246799999 999999999999999999999999999999886 899999998 3211
Q ss_pred --------CcCcEEEEcCC-CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCC
Q 010938 126 --------SFGTAAYVTQD-DNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGIS 196 (497)
Q Consensus 126 --------~~~~i~yv~Q~-~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 196 (497)
..+.++|++|+ +.+++.+||.+|+.+.+...... .+ ......| .+..+|
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld------~l~~lS 260 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMD------SLTRYA 260 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEE------CHHHHH
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHH------hHHHHH
Confidence 13568999995 55677889999998865432000 00 0001112 134699
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEeCCCChHHHhcCCeEEE
Q 010938 197 GGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---D-GR-----TVIASIHQPSSEVFELFDRLYL 267 (497)
Q Consensus 197 GGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvI~~tH~~~~~i~~~~D~v~~ 267 (497)
+|| |||+|| +.+|++ |+|||+.....+.++++++.+ + |. ||++++||.. ..+||++++
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~ 327 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARA 327 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHH
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEE
Confidence 999 999999 889988 999999999999999999876 3 74 9999999974 578999999
Q ss_pred eeCCeEEEEeCchhH
Q 010938 268 LSGGKTVYFGETSAA 282 (497)
Q Consensus 268 L~~G~iv~~G~~~~~ 282 (497)
|.+|+++..|++.++
T Consensus 328 l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 328 ILDGHIVLSRRLAEA 342 (438)
T ss_dssp HSSEEEEECHHHHHT
T ss_pred EeCcEEEEeCCHHHc
Confidence 999999999877654
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.86 E-value=1.4e-21 Score=201.09 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=76.9
Q ss_pred CccCC-CCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHH
Q 010938 189 NWHLR-GISGGERRRVSIALEIL---------MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV 258 (497)
Q Consensus 189 ~~~~~-~LSGGerqRv~IA~aL~---------~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i 258 (497)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. . .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence 33455 79999999999999999 8999999999999999999999999998873 699999995 3 2
Q ss_pred HhcCCeEEEeeCCeEEEEeCchhH
Q 010938 259 FELFDRLYLLSGGKTVYFGETSAA 282 (497)
Q Consensus 259 ~~~~D~v~~L~~G~iv~~G~~~~~ 282 (497)
.||++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=3e-23 Score=211.56 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=106.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CcCcEEEEcCCCCCCCCCCHHH
Q 010938 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
+++++|+.+++|++++|+||||||||||+++|+|+++|+ +|.|.++|.+... ..+.++|++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999885 8999999864110 011222221
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010938 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
+ |||+||++||+||..+|+++++||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010938 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
.++.+.|+.+...+.|+|+++|+++ +.+.|||+++|.+|.
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2456777777654458999999964 778899999998775
No 80
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=9.8e-21 Score=193.49 Aligned_cols=77 Identities=30% Similarity=0.332 Sum_probs=70.0
Q ss_pred cCCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCe
Q 010938 191 HLRGISGGERR------RVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDR 264 (497)
Q Consensus 191 ~~~~LSGGerq------Rv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~ 264 (497)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++ ++...||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 46789999999 66778888889999999999999999999999999999877789999999994 57899999
Q ss_pred EEEee
Q 010938 265 LYLLS 269 (497)
Q Consensus 265 v~~L~ 269 (497)
+++|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.84 E-value=5.9e-26 Score=218.05 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=99.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------CcCcEEEEcCCCCCCCC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------SFGTAAYVTQDDNLIGT 142 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------~~~~i~yv~Q~~~l~~~ 142 (497)
+.-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.+... ..+.++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 4 77888 764211 12468899998766654
Q ss_pred CCH-HHHHHH---HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH-----HHHHHhCC
Q 010938 143 LTV-RETISY---SARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI-----ALEILMRP 213 (497)
Q Consensus 143 lTV-~e~l~~---~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I-----A~aL~~~p 213 (497)
++. .+++.+ ....+ ..+ ...++++++...+ ..+. ..|||||+||++| +++++.+|
T Consensus 83 ~~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp HHHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred hhhccchhhhhhcccccC---CCc----HHHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 321 111111 11110 111 1235566654332 1111 3699999999999 89999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 010938 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSR 242 (497)
Q Consensus 214 ~lllLDEPTsgLD~~~~~~i~~~L~~l~~ 242 (497)
++++|||||+++|..+...+.+.|.++.+
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999887754
No 82
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=2.4e-21 Score=219.51 Aligned_cols=161 Identities=23% Similarity=0.330 Sum_probs=123.5
Q ss_pred HHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC-C-HH---HHHHHHHHH
Q 010938 99 LDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM-P-WS---EKRTLVERT 173 (497)
Q Consensus 99 L~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~-~-~~---~~~~~v~~~ 173 (497)
..|..+++++. .|+|+++|+++.. +..+||.+++.|.......... . .. .......+.
T Consensus 385 ~~C~g~rl~~~---~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 447 (916)
T 3pih_A 385 SVCGGRRLNRE---ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEF 447 (916)
T ss_dssp TTTCSCCBCTT---GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHH
T ss_pred hhcccccCChH---hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHH
Confidence 34445566664 7899999886421 3446888888886544322110 0 00 111234567
Q ss_pred HHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 010938 174 IIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIAS 250 (497)
Q Consensus 174 l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~--lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~ 250 (497)
|..+||... .++.+ .+|||||||||+||++|+.+|+ +|||||||+|||+.....+++.|++++++|.|||++
T Consensus 448 L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 448 LVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 888999754 45544 5799999999999999999887 999999999999999999999999998889999999
Q ss_pred eCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010938 251 IHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 251 tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
+||+ +. ...||+|++| ++|++++.|+++++.
T Consensus 523 tHd~-~~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 523 EHDE-EV-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp CCCH-HH-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred eCCH-HH-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 9995 44 4569999999 899999999998875
No 83
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.84 E-value=1.8e-24 Score=218.93 Aligned_cols=123 Identities=18% Similarity=0.104 Sum_probs=98.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
+++|+++||+||||||||||+++|+|+++|. .|. +.++||+|++.+++. |++||+.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~--- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHRK--- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHhc---
Confidence 7999999999999999999999999998773 331 458999999999988 999998653211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010938 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
+.+.....+.+.+.|+.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||+..+|+
T Consensus 148 -g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 -GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp -TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred -CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1222222355777888887 44444433 47999999999999999999999999999999986
No 84
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.83 E-value=1e-20 Score=203.93 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=71.4
Q ss_pred cCCCC-CHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEE
Q 010938 191 HLRGI-SGGERRRVSIALEILMRP--RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL 267 (497)
Q Consensus 191 ~~~~L-SGGerqRv~IA~aL~~~p--~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~ 267 (497)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||++||++ . +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~-~-~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA-Q-IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH-H-HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-H-HHHhCCEEEE
Confidence 35667 999999999999999999 99999999999999999999999999987 89999999995 3 5567999999
Q ss_pred eeCC
Q 010938 268 LSGG 271 (497)
Q Consensus 268 L~~G 271 (497)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=4.4e-22 Score=199.05 Aligned_cols=183 Identities=12% Similarity=0.113 Sum_probs=119.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee-EEEECCEeCCC--CcCcEEEEcCCCCCCCCCCH
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TILLNGHKTKL--SFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G-~I~~~G~~~~~--~~~~i~yv~Q~~~l~~~lTV 145 (497)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+..... ..+++.++.+... +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 56899999999999999999999999999999999998764 46 56543322111 0112222333221 122
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH-HHHHHHHHHHHhCCCEEEEeCCCC-
Q 010938 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILMRPRLLFLDEPTS- 223 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~IA~aL~~~p~lllLDEPTs- 223 (497)
.+++.... + +..+..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++|+||||+
T Consensus 95 ~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I------ENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H------HHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C------CHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 23333221 1 1122233444444322221 111 123588998 66776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEeCCC-Ch--------------------HHHhcCCeEEEeeCCeE
Q 010938 224 --G---LDS-AAAFFVTQTLRCLSRD-GRTVIASIHQP-SS--------------------EVFELFDRLYLLSGGKT 273 (497)
Q Consensus 224 --g---LD~-~~~~~i~~~L~~l~~~-g~tvI~~tH~~-~~--------------------~i~~~~D~v~~L~~G~i 273 (497)
+ +|. .....+++.|++++++ |.|||+++|+. .. .+.++||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999864 99999999995 13 67889999999998874
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.82 E-value=7.4e-22 Score=226.93 Aligned_cols=172 Identities=18% Similarity=0.115 Sum_probs=121.6
Q ss_pred EEEEEe-----EEEEEEccCCcccceeeceEEEEeC-------CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE
Q 010938 51 RLTWKD-----LTVMVTLSNGETHNVLEGLTGYAEP-------GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (497)
Q Consensus 51 ~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~ 118 (497)
.|+++| |++.+. +.+.+++|+++.+++ |++++|+||||||||||||+| |++.+.
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 489999 888773 246799999999987 999999999999999999999 886531
Q ss_pred CCEeCCCCcCcEE-EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 010938 119 NGHKTKLSFGTAA-YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 119 ~G~~~~~~~~~i~-yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 197 (497)
.++| ||||+.. .+||.|++.. .+|+.+.... ....+|+
T Consensus 816 ---------aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~-----~~stf~~ 854 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMS-----GESTFFV 854 (1022)
T ss_dssp ---------HTTTCCEESSEE---EECCCSBEEE------------------------ECC--------------CHHHH
T ss_pred ---------hheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhh-----chhhhHH
Confidence 2344 8999753 4455554310 1122221111 1235788
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEeCCCChHHHhcCCeEEEeeCCeEE-
Q 010938 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAA-FFVTQTLRCLSRD-GRTVIASIHQPSSEVFELFDRLYLLSGGKTV- 274 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~-~~i~~~L~~l~~~-g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv- 274 (497)
++++ +++|++++++|+++||||||+|+|+... ..++..|+.+.++ |.++|++||+. ..+..++|++.++ +|++.
T Consensus 855 em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~ 931 (1022)
T 2o8b_B 855 ELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMAC 931 (1022)
T ss_dssp HHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEE
T ss_pred HHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEE
Confidence 7765 9999999999999999999999999985 5578899999876 99999999995 6777889999887 48887
Q ss_pred -EEeCch
Q 010938 275 -YFGETS 280 (497)
Q Consensus 275 -~~G~~~ 280 (497)
+.|+++
T Consensus 932 ~~~~~~~ 938 (1022)
T 2o8b_B 932 MVENECE 938 (1022)
T ss_dssp C------
T ss_pred EEecCcc
Confidence 445543
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=9e-21 Score=204.76 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=120.0
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010938 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 76 s~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
++.+.+|++++|+||||||||||++.++|...+ .|. +.+.|++|++. .++.++.. .+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~------------~vi~~~~ee~~----~~l~~~~~---~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE------------RAILFAYEESR----AQLLRNAY---SW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC------------CEEEEESSSCH----HHHHHHHH---TT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC------------CEEEEEEeCCH----HHHHHHHH---Hc
Confidence 558999999999999999999999999998765 232 12456677641 12333221 11
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HH
Q 010938 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA-----AA 230 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~-----~~ 230 (497)
.+. +++ +...|+....+. .+..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 332 ----g~~-------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 ----GMD-------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ----SCC-------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ----CCC-------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 122 112 224566544443 45679999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCC---------hHHHhcCCeEEEeeCCe
Q 010938 231 FFVTQTLRCLSRDGRTVIASIHQPS---------SEVFELFDRLYLLSGGK 272 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~~---------~~i~~~~D~v~~L~~G~ 272 (497)
..+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999888999999999961 45678999999999886
No 88
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.81 E-value=5.4e-22 Score=193.39 Aligned_cols=177 Identities=12% Similarity=0.093 Sum_probs=108.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHH
Q 010938 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
+.+.+|+||||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 222233 1235699999985 77789999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 010938 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLD 226 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD 226 (497)
+++.+....... ..+.....+.+.+.++.+ .+..+.. +..+|+||+||+.+ ++++.+|+++|+|||...+|
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 999876433211 001111122344445443 2333433 35799999999988 58888999999999998888
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHH-hcCCeEEEeeCCeEEEEeCchhHHH
Q 010938 227 SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVF-ELFDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 227 ~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~-~~~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.. +.++ .+.+|++++|+. ..+. .+++++ .+|+ +.+++..
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~-~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSD-VRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHH-HHHHHHHHHHT---C--------CHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHH-HHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 63 1222 378999999973 3343 334434 5564 4555544
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.81 E-value=7.6e-22 Score=202.33 Aligned_cols=191 Identities=17% Similarity=0.168 Sum_probs=138.5
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---- 125 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---- 125 (497)
..++.+++++.|. ....+|+++ +++.+|++++|+||||||||||+++|+|..+++ .|.|.+.|++...
T Consensus 44 ~~i~~~~l~~~~~----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFI----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEEC----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHH
T ss_pred CCeeecccceecC----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHH
Confidence 3478889998883 246799999 999999999999999999999999999999886 8999999864110
Q ss_pred --------CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH
Q 010938 126 --------SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG 197 (497)
Q Consensus 126 --------~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 197 (497)
..+.+.+++|.+. +..+.+...... ..+.+.+...+ .+..+--..+..||+
T Consensus 116 i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~~ae~~~~~~----~~vl~~ld~~~~lS~ 174 (347)
T 2obl_A 116 LALLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA------------TTIAEYFRDQG----KNVLLMMDSVTRYAR 174 (347)
T ss_dssp HTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HHHHHHHHTTT----CEEEEEEETHHHHHH
T ss_pred HHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH------------HHHHHHHHhcc----ccHHHHHhhHHHHHH
Confidence 1234677777532 233322211100 00111111111 110000013457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEeCCCChHHHhcCCeEEEeeC
Q 010938 198 GERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGR-----TVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 198 GerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
|| |||++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||.. ..+||++++|.+
T Consensus 175 g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d 241 (347)
T 2obl_A 175 AA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD 241 (347)
T ss_dssp HH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS
T ss_pred HH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC
Confidence 99 899999 688877 999999999999999999874 477 9999999974 567999999999
Q ss_pred CeEEEEeCchhH
Q 010938 271 GKTVYFGETSAA 282 (497)
Q Consensus 271 G~iv~~G~~~~~ 282 (497)
|+++..|+.++.
T Consensus 242 G~Ivl~~~l~~~ 253 (347)
T 2obl_A 242 GHIVLTRELAEE 253 (347)
T ss_dssp EEEEBCHHHHTT
T ss_pred cEEEEeCCHHHc
Confidence 999998877654
No 90
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=1.9e-19 Score=203.19 Aligned_cols=135 Identities=27% Similarity=0.370 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHhhccCCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHhCC
Q 010938 141 GTLTVRETISYSARLRLPDK---MPW---SEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p 213 (497)
..|||.|++.|...+.++.. +.. ++..+++ +.|..+||... .++.+ .+|||||+|||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 45899999999766543210 000 2344555 45889999764 56655 479999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010938 214 --RLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 214 --~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++ ++ ...||+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999988899999999995 44 4689999999 799999999998764
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=2.3e-23 Score=224.99 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=116.8
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCChHHHHHHH--HHcCCCCCCCceeEEEECCEeCCC----CcCcEEEEcCCCCCC
Q 010938 68 THNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDA--LSSRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLI 140 (497)
Q Consensus 68 ~~~iL~~vs~-~i~~Ge~~~IlG~nGaGKSTLL~~--L~G~~~~~~~~~G~I~~~G~~~~~----~~~~i~yv~Q~~~l~ 140 (497)
..++|++||+ .+++|++++|+||||||||||+++ ++|+.+|+ +|.|+++|.+... ..+.+||++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4679999999 999999999999999999999999 78998875 8999999976321 124578999875422
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeC
Q 010938 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDE 220 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDE 220 (497)
+. +.+ ..... .. ...++++.++|.+..+.. ++.|||| +|+++++||
T Consensus 101 ~~------l~~---~~~~~--~~-----~~~~~l~~~~l~~~~~~~-----~~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 101 GK------LFI---LDASP--DP-----EGQEVVGGFDLSALIERI-----NYAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp TS------EEE---EECCC--CS-----SCCSCCSSHHHHHHHHHH-----HHHHHHH-------------TCSEEEEEC
T ss_pred Cc------EEE---EecCc--cc-----chhhhhcccCHHHHHHHH-----HHHHHHc-------------CCCEEEECC
Confidence 11 100 00000 00 001111222222222221 2235554 588999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChH--------HHhcCCeEEEeeC
Q 010938 221 PTS-----GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE--------VFELFDRLYLLSG 270 (497)
Q Consensus 221 PTs-----gLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~--------i~~~~D~v~~L~~ 270 (497)
||+ +||+..+..+.++++.+++.|.|||+++|++... +..+||+|++|++
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 998 4699999999999999988899999999997431 3456999999998
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.80 E-value=5.3e-20 Score=209.32 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=119.2
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHH--------HcCCCCCCCceeEEEECCEe
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDAL--------SSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L--------~G~~~~~~~~~G~I~~~G~~ 122 (497)
.+.+++...-+-....+.+.+++|+++.+++|++++|+||||||||||||++ .|..-|. ++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa---~~~~------ 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC---ESAE------ 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE---EEEE------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc---cccc------
Confidence 3555554432211111245799999999999999999999999999999999 4433331 1110
Q ss_pred CCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 010938 123 TKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 123 ~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 202 (497)
++.+ +.+ +..+|+.+. ..+++|+|++++
T Consensus 702 -------~~~~---d~i----------------------------------~~~ig~~d~--------l~~~lStf~~e~ 729 (934)
T 3thx_A 702 -------VSIV---DCI----------------------------------LARVGAGDS--------QLKGVSTFMAEM 729 (934)
T ss_dssp -------EECC---SEE----------------------------------EEECC-----------------CHHHHHH
T ss_pred -------chHH---HHH----------------------------------HHhcCchhh--------HHHhHhhhHHHH
Confidence 1100 001 111222211 113588888888
Q ss_pred HHHHHHH--HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010938 203 VSIALEI--LMRPRLLFLDEPTSGLDSAAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 203 v~IA~aL--~~~p~lllLDEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
+.+|++| +++|+++||||||+|||+.....+ +.+++.+.+ .|.|+|++||+. ++..+||++..+.+|++.+.++
T Consensus 730 ~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~ 807 (934)
T 3thx_A 730 LETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTT 807 (934)
T ss_dssp HHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEE
T ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEec
Confidence 8888888 999999999999999999999888 677788876 499999999994 5778999999999999998887
Q ss_pred chhHH
Q 010938 279 TSAAF 283 (497)
Q Consensus 279 ~~~~~ 283 (497)
.+++.
T Consensus 808 ~~~l~ 812 (934)
T 3thx_A 808 EETLT 812 (934)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 76653
No 93
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.79 E-value=2.7e-19 Score=202.48 Aligned_cols=133 Identities=25% Similarity=0.344 Sum_probs=110.3
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCH----------HHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHH
Q 010938 140 IGTLTVRETISYSARLRLPDKMPW----------SEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 140 ~~~lTV~e~l~~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~a 208 (497)
+..+||.|.+.|...+. .+. ++..+++ +.|..+||... .++.+ .+|||||+|||.||++
T Consensus 466 ~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~-----~tLSGGEkQRV~LA~a 535 (993)
T 2ygr_A 466 VCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA-----ATLSGGEAQRIRLATQ 535 (993)
T ss_dssp SSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG-----GGCCHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc-----ccCCHHHHHHHHHHHH
Confidence 45689999999965443 223 2344455 45788999754 56655 4799999999999999
Q ss_pred HHhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCch
Q 010938 209 ILMR--PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETS 280 (497)
Q Consensus 209 L~~~--p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 280 (497)
|..+ |++|||||||+|||+.....+++.|++|++.|.|||+++|++ +. ...||+|++| ++|++++.|+++
T Consensus 536 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~ 613 (993)
T 2ygr_A 536 IGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYD 613 (993)
T ss_dssp HTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHH
T ss_pred HhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHH
Confidence 9999 589999999999999999999999999998999999999995 44 5689999999 799999999998
Q ss_pred hHHH
Q 010938 281 AAFE 284 (497)
Q Consensus 281 ~~~~ 284 (497)
++..
T Consensus 614 e~~~ 617 (993)
T 2ygr_A 614 ELLR 617 (993)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8753
No 94
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.79 E-value=8.5e-20 Score=205.28 Aligned_cols=172 Identities=19% Similarity=0.212 Sum_probs=126.4
Q ss_pred CCCChHHHHHHHHHcCCCCC------CCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC------
Q 010938 90 PSGSGKSTLLDALSSRLASN------AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRL------ 157 (497)
Q Consensus 90 ~nGaGKSTLL~~L~G~~~~~------~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~------ 157 (497)
.+..||++|.+.+....-|. ...+|+|.++|+++... ..+++.|.+.|......
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~--------------~~~~v~e~~~~~~~~~~~~~~~~ 335 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITEL--------------SRLPLARVSELLRPYAEEREPGH 335 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHH--------------HHSBHHHHHHHHHHHHTTCSSCS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHH--------------hhcCHHHHHHHHHhhhhhhhhcc
Confidence 45679999999887633221 01367888888764211 01344444444333210
Q ss_pred ------CCCC---C---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCC
Q 010938 158 ------PDKM---P---WSEKRTLVERTIIEMGLQDC-ADTVIGNWHLRGISGGERRRVSIALEILMRP--RLLFLDEPT 222 (497)
Q Consensus 158 ------~~~~---~---~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p--~lllLDEPT 222 (497)
.... . ..+...+++ .+..+||.+. .++.+ .+|||||||||.||++|..+| .+|+|||||
T Consensus 336 ~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT 409 (842)
T 2vf7_A 336 AERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPS 409 (842)
T ss_dssp TTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTT
T ss_pred cchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCcc
Confidence 0000 0 123455565 6888999764 56654 479999999999999999999 599999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe------eCCeEEEEeCchhHH
Q 010938 223 SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL------SGGKTVYFGETSAAF 283 (497)
Q Consensus 223 sgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 283 (497)
+|||+.....+++.|++|++.|.|||+++|++ + +...||+|++| ++|++++.|+++++.
T Consensus 410 ~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 410 AGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999999999999988899999999995 4 56789999999 799999999988764
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.79 E-value=3.8e-21 Score=185.97 Aligned_cols=167 Identities=14% Similarity=0.107 Sum_probs=105.5
Q ss_pred eeeceE-EEEeCCeEEEEECCCCChHHHHHHHHH--cCCCCCCCceeEEEECCEeCCC----CcCcEEEEcCCCCCCCCC
Q 010938 71 VLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALS--SRLASNAFLSGTILLNGHKTKL----SFGTAAYVTQDDNLIGTL 143 (497)
Q Consensus 71 iL~~vs-~~i~~Ge~~~IlG~nGaGKSTLL~~L~--G~~~~~~~~~G~I~~~G~~~~~----~~~~i~yv~Q~~~l~~~l 143 (497)
.|+++- +-+++|++++|+||||||||||+++|+ |...++ .|.+.+++..... ..+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 344442 379999999999999999999999999 663443 5777777653211 112355666654333444
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 010938 144 TVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS 223 (497)
Q Consensus 144 TV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTs 223 (497)
++.++........ ..... .. ....+.++..+...+..-..+|+++++||||+
T Consensus 95 ~~~~~~~~~~~~~----------~~~~~-------------~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~ 146 (251)
T 2ehv_A 95 AIVDGVSSVVGLP----------SEEKF-------------VL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPS 146 (251)
T ss_dssp EEEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHH
T ss_pred EEEEccccccccc----------cccce-------------ec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHH
Confidence 4433322110000 00000 00 01234455555455555568999999999999
Q ss_pred CCC-----HHHHHHHHHHHHHHHhCCCEEEEEeCCCChHH---------HhcC-CeEEEee
Q 010938 224 GLD-----SAAAFFVTQTLRCLSRDGRTVIASIHQPSSEV---------FELF-DRLYLLS 269 (497)
Q Consensus 224 gLD-----~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i---------~~~~-D~v~~L~ 269 (497)
+|| +..+..+.++++.+++.|+|||+++|+. .++ ..+| |+|++|+
T Consensus 147 ~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~-~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 147 IALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP-DPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC-CCCcccccccChhhEeeeEEEEEe
Confidence 998 6777779999999988899999999996 455 5788 9999995
No 96
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=2.8e-19 Score=161.54 Aligned_cols=82 Identities=28% Similarity=0.314 Sum_probs=73.6
Q ss_pred ccCCCCCHHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010938 190 WHLRGISGGERRRVSIA------LEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 190 ~~~~~LSGGerqRv~IA------~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
..+..||||||||++|| ++|+.+|+++||||||+|||+.++..+.+.|+++.++|.|||++||++ ++..+||
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d 130 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 130 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCC
Confidence 45678999999999876 899999999999999999999999999999999877789999999995 4678999
Q ss_pred eEEEe--eCCeE
Q 010938 264 RLYLL--SGGKT 273 (497)
Q Consensus 264 ~v~~L--~~G~i 273 (497)
++++| .+|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 45643
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.78 E-value=1.3e-20 Score=179.89 Aligned_cols=154 Identities=21% Similarity=0.168 Sum_probs=96.6
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCC----CceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHH
Q 010938 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNA----FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (497)
Q Consensus 77 ~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~----~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~ 152 (497)
+-+++|++++|+||||||||||+++|+|...+.. ...|.|++++.... ..+.+++++|...+++. |+.||+.+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~~ 97 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYVA 97 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-CHHHHHHHHHHTTSCHH-HHHHTEEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-CHHHHHHHHHHcCCCHH-HHhhcEEEE
Confidence 5799999999999999999999999999544310 12346666654310 01123334443333222 333322211
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH-HHHHHHHHHHHh-------CCCEEEEeCCCCC
Q 010938 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEILM-------RPRLLFLDEPTSG 224 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~IA~aL~~-------~p~lllLDEPTsg 224 (497)
...++++ ++.+..+.+++. +|+++++||||++
T Consensus 98 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 98 ----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp ----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred ----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 1233333 333555666655 9999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEeCCCC---hHHHhcCCeEEEeeCCe
Q 010938 225 LDSA-------A-----AFFVTQTLRCLSR-DGRTVIASIHQPS---SEVFELFDRLYLLSGGK 272 (497)
Q Consensus 225 LD~~-------~-----~~~i~~~L~~l~~-~g~tvI~~tH~~~---~~i~~~~D~v~~L~~G~ 272 (497)
||+. . ...+++.|+++++ .|.|||+++|... ..+...+|++++|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9984 2 2377888888765 4999999999532 23778899999998753
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.77 E-value=5.8e-20 Score=181.26 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=99.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHH
Q 010938 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
.+|+++| +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.++. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 8999999999999999999999999998762 1799999886542 333321100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.. . ..+|+.. ..+ |++||++|..+|+++++|||| |+.+
T Consensus 75 -----v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 00 0 0123321 123 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010938 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
...++ +. +..|.+|++++|+.. +...||+++.|..
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 66544 33 356999999999953 6788999988854
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.75 E-value=9.4e-19 Score=198.61 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=100.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHH
Q 010938 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+.|++|||+++++|++++|+||||||||||||++++..-.. ..|. .... .-+.++.-+.++..+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa---~~~~i~~~d~i~~~ig--- 724 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPA---EEATIGIVDGIFTRMG--- 724 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSS---SEEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccc---hhhhhhHHHHHHHhCC---
Confidence 467999999999999999999999999999999998642110 0110 0000 0011111111222221
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010938 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
+.+.... ....+|+||+|++.|+++ +.+|+++||||||+|||+
T Consensus 725 -------------------------------~~d~l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 725 -------------------------------AADNIYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred -------------------------------hHHHHHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 1111111 224689999999999998 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-CCCEEEEEeCCCChHHHhcCCeE
Q 010938 228 AAAFFVT-QTLRCLSR-DGRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 228 ~~~~~i~-~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v 265 (497)
.....+. .+++.+.+ .|.|+|++||++ ++.+++|+.
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 9999987 77788865 599999999994 455666654
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.75 E-value=1.6e-19 Score=201.91 Aligned_cols=146 Identities=22% Similarity=0.168 Sum_probs=106.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHH
Q 010938 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~-~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
.+.+++|+|++ |++++|+||||||||||||+|+|+.. +. .|.+. + .....+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p--a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P--AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S--SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e--hhccceeeHHH---hhccCCHH
Confidence 36799999999 99999999999999999999999863 32 45432 1 11234677765 45555655
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---
Q 010938 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI--LMRPRLLFLDEP--- 221 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL--~~~p~lllLDEP--- 221 (497)
||+. .++|+|+++++.+|+++ +++|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5432 13799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEe
Q 010938 222 TSGLDSAAA-FFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFG 277 (497)
Q Consensus 222 TsgLD~~~~-~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 277 (497)
|++||+.+. ..+++.|.+ .|.|+|++||+. +...++ .-.+.++++....
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEEC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEEE
Confidence 999999875 578887766 489999999994 455665 2223445554443
No 101
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=2.5e-20 Score=187.61 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=86.7
Q ss_pred EeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC-CCCCCCceeEEEECCEeCCC--CcCcEE
Q 010938 55 KDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR-LASNAFLSGTILLNGHKTKL--SFGTAA 131 (497)
Q Consensus 55 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~-~~~~~~~~G~I~~~G~~~~~--~~~~i~ 131 (497)
.||++.| +.+.++++++|+| +|+||||||||||++.|+|. ..+. +| |.++|.+... ..+.++
T Consensus 2 ~~l~~~~-----~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceE-----CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEE
Confidence 3677777 4577999999988 99999999999999999997 6564 78 8888865321 234578
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHh
Q 010938 132 YVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM 211 (497)
Q Consensus 132 yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~ 211 (497)
|++|.+.+...+||.|+..++..... .+..+..+..+. +..+. +++++|||||||+.+||+++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~-----~~~~~sgg~rqrv~~ara~~- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYID------EQFER-----YLHDESGLNRRHIIDNRVHC- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHH-----HHHHHTSSCCTTCCCCCCCE-
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHH-----HHHHhCHHhhhhhhhhhhhh-
Confidence 99999888888999999887643210 000011111111 11222 34579999999999998885
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCC
Q 010938 212 RPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRD-GRTVIASIHQPS 255 (497)
Q Consensus 212 ~p~lllLDEPTs-gLD~~~~~~i~~~L~~l~~~-g~tvI~~tH~~~ 255 (497)
++++||||+ |||+... +.++++.+. +.++|++.||..
T Consensus 130 ---ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 ---CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp ---EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ---eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999999998 5999873 566666553 789999999964
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.74 E-value=2e-21 Score=184.17 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=113.6
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCC--CCCCHHHHHHHHhhcc
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLI--GTLTVRETISYSARLR 156 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~--~~lTV~e~l~~~~~~~ 156 (497)
.++|+++||+||||||||||+++|+|++.+ .++|++|++.++ +.+|+.++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 578999999999999999999999997642 478999998776 56899988765421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH----HHHHHHHHHHHhCCCEEEEeCCCCC-------C
Q 010938 157 LPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE----RRRVSIALEILMRPRLLFLDEPTSG-------L 225 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe----rqRv~IA~aL~~~p~lllLDEPTsg-------L 225 (497)
.+ .....+.+.+.++.+++.+..+.+ +..+|+|| +||+++|++++.+|.++++||||++ |
T Consensus 61 ~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Ch----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11 111234566777888876655543 34689996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HhCCCEEEEEeCCC
Q 010938 226 DSAAAFFVTQTLRCL-SRDGRTVIASIHQP 254 (497)
Q Consensus 226 D~~~~~~i~~~L~~l-~~~g~tvI~~tH~~ 254 (497)
|+.....+.+.+++. .+.|.|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999876 45689999999974
No 103
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.73 E-value=4.2e-19 Score=199.54 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=109.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHH
Q 010938 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+.+++|+|++ ++|++++|+||||||||||||+|+|+.... ..| .........+++++| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHHH
Confidence 45799999999 999999999999999999999999974221 112 111111123455544 455555555
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010938 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
++..+ + +.+|+|+++ ++.+..++++|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 44221 1 135677664 4555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCc
Q 010938 228 AAAFFV-TQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGET 279 (497)
Q Consensus 228 ~~~~~i-~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 279 (497)
.....+ +..++.+.+ .|.++|++||++ ++..+||++..+.+|++.+....
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 888776 788888887 499999999995 35678998878888888766543
No 104
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.72 E-value=3.3e-19 Score=179.60 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=106.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cCcEEEEcCCCCCCCCCCHHHHH
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
+|++++|+||||||||||+++|+|+++|. +|+|.++|.+.... +..++|++|++.++|.++|++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999885 89999999874211 13589999999999989999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
.++...... ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+
T Consensus 178 ~~~~~~~~d------------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARGYD------------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHTCS------------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCCCC------------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 876321100 001222343322221 2455568999999999999994444 455555
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEeCCC
Q 010938 230 AFFVTQTLRCLSRD-GRTVIASIHQP 254 (497)
Q Consensus 230 ~~~i~~~L~~l~~~-g~tvI~~tH~~ 254 (497)
...+++.++.+.+. |.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 55667777777654 89999999984
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.72 E-value=1.8e-19 Score=184.97 Aligned_cols=167 Identities=21% Similarity=0.170 Sum_probs=103.8
Q ss_pred ceeece-EEEEeCCeEEEEECCCCChHHHHHHHHHcCC--CCCC-CceeE-EEECCEeCCCCcCcEEEEcCCCCCCCCCC
Q 010938 70 NVLEGL-TGYAEPGTLTALMGPSGSGKSTLLDALSSRL--ASNA-FLSGT-ILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (497)
Q Consensus 70 ~iL~~v-s~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~--~~~~-~~~G~-I~~~G~~~~~~~~~i~yv~Q~~~l~~~lT 144 (497)
..|+.+ ++.+++|++++|+||||||||||++.|++.. +|.. ...|. |++++.+.. ..+++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 356665 6899999999999999999999999999987 4420 01267 888876431 12345566665544433 4
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHH-------hCCCEEE
Q 010938 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-------MRPRLLF 217 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~-------~~p~lll 217 (497)
+.+|+.+... .-|++++|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVARA---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEEC---------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEec---------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 4343322110 01455666677777766 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeC
Q 010938 218 LDEPTSGLDSAA------------AFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGE 278 (497)
Q Consensus 218 LDEPTsgLD~~~------------~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 278 (497)
+||||++||+.. ...++..|+++++ .|.|||+++|.. ......++....+..|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecC
Confidence 999999999852 3566777777765 589999999985 34444455556666676654443
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.71 E-value=6.2e-20 Score=201.35 Aligned_cols=191 Identities=15% Similarity=0.164 Sum_probs=116.4
Q ss_pred EEEEEeEEEEEEccCCcccceeece----------EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGL----------TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G 120 (497)
.+.++||+..|.. ..+.+|+.+ ++.++. +||+|||||||||||++|+|+..|. .+|.|+++|
T Consensus 10 ~i~~~~l~~~~~~---~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEE---KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCP 81 (608)
T ss_dssp ----------CHH---HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCSC
T ss_pred hhhhhhhhHHHHH---HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcC
Confidence 4788889988842 123344433 355554 9999999999999999999998772 289999999
Q ss_pred EeCC--------CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccC
Q 010938 121 HKTK--------LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHL 192 (497)
Q Consensus 121 ~~~~--------~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 192 (497)
.+.. ...+.++|++|+..+++.+||+||+.++........ .++. +
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s---~-------- 134 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS---H-------- 134 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC---S--------
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc---h--------
Confidence 8731 123568999999999999999999987643210000 0111 0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCh---H---H
Q 010938 193 RGISGGERRRVSIALEILMRPRLLFLDEP------TSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQPSS---E---V 258 (497)
Q Consensus 193 ~~LSGGerqRv~IA~aL~~~p~lllLDEP------TsgLD~~~~~~i~~~L~~l~~--~g~tvI~~tH~~~~---~---i 258 (497)
+++.++.+....|+++|+||| |+|||+..+..+.++++++.+ .+.++++++|+... + +
T Consensus 135 --------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 135 --------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp --------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred --------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 111222223458999999999 999999999999999999754 36788999998531 1 1
Q ss_pred Hhc-----CCeEEEeeCCeEEEEeCchhHHH
Q 010938 259 FEL-----FDRLYLLSGGKTVYFGETSAAFE 284 (497)
Q Consensus 259 ~~~-----~D~v~~L~~G~iv~~G~~~~~~~ 284 (497)
.+. ...|+++.++.++..|+.+++..
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 221 24578888888887776654443
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.69 E-value=2.9e-18 Score=163.35 Aligned_cols=171 Identities=14% Similarity=0.071 Sum_probs=109.0
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHH
Q 010938 69 HNVLEGLTG-YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 69 ~~iL~~vs~-~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
...|+++.+ .+++|++++|+||||||||||++.|++...+. .|.|.+.+.+. +..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~--------------------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE--------------------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS--------------------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc--------------------CHHH
Confidence 557888886 89999999999999999999999999876542 45555433211 1111
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCC
Q 010938 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPR--LLFLDEPTSGL 225 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~--lllLDEPTsgL 225 (497)
......................++.....++ ... .....|.++.++...+.....+|+ ++++||||+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHHHHTTCCCGGGBTTTEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred HHHHHHHhcchHHHHhhCCEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 1110000000000000000000000000000 000 112359999999888888888999 99999999888
Q ss_pred --CHHHHHHHHHHHHHHHh-CCCEEEEEeCCCC-------hHHHhcCCeEEEeeCC
Q 010938 226 --DSAAAFFVTQTLRCLSR-DGRTVIASIHQPS-------SEVFELFDRLYLLSGG 271 (497)
Q Consensus 226 --D~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~-------~~i~~~~D~v~~L~~G 271 (497)
|+.....+++.|+++++ .|.|||+++|+.. ..+..+||+|++|+..
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99999999999999875 5999999999962 3488899999999754
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.69 E-value=7.4e-20 Score=171.98 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=103.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
|++++|+||||||||||+++|+|+++ . +| |.++|.+.. ...+.+||++|+. .... +++ +.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc--
Confidence 78999999999999999999999987 5 78 988887642 2246789999975 1111 111 1110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHH-HHHH---HHHhCCCEEEEeC--CCCCCCHHHHH
Q 010938 159 DKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRV-SIAL---EILMRPRLLFLDE--PTSGLDSAAAF 231 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv-~IA~---aL~~~p~lllLDE--PTsgLD~~~~~ 231 (497)
++..+ ..+..+|. +...+|+|||+++ ++++ |++.+|+++|+|| |+..+|.....
T Consensus 66 ------------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 66 ------------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp ------------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH
T ss_pred ------------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH
Confidence 01111 11223443 3456999999998 4444 5799999999999 89999987544
Q ss_pred HHHHHHHHHHhCCCEEEE----EeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010938 232 FVTQTLRCLSRDGRTVIA----SIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 232 ~i~~~L~~l~~~g~tvI~----~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
.|+++.+...++|+ ++|+.. ..+.|+|..+.+|+++.-
T Consensus 127 ----~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 127 ----AVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp ----HHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred ----HHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 44444444455553 238842 356777777888888764
No 109
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.67 E-value=7.1e-17 Score=160.01 Aligned_cols=150 Identities=18% Similarity=0.173 Sum_probs=104.7
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccC
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRL 157 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~ 157 (497)
-+++|++++|+||||||||||++.|++... .|.++ .|.+... ...+.|+..++.. ..+.+.+. .+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~~-~~~v~~~~~e~~~---~~~~~r~~---~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGELP-TGPVIYLPAEDPP---TAIHHRLH---ALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCCC-CCCEEEEESSSCH---HHHHHHHH---HHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccCC-CccEEEEECCCCH---HHHHHHHH---HHHh
Confidence 478999999999999999999999998653 35553 3443221 2457888766532 01111211 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHHH---HH
Q 010938 158 PDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS--GLDSAAA---FF 232 (497)
Q Consensus 158 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTs--gLD~~~~---~~ 232 (497)
.... ....++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... ..
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1111 235567788888766554 3457999998865 68889999999999999 9998544 78
Q ss_pred HHHHHHHHHh-CCCEEEEEeCCC
Q 010938 233 VTQTLRCLSR-DGRTVIASIHQP 254 (497)
Q Consensus 233 i~~~L~~l~~-~g~tvI~~tH~~ 254 (497)
+++.|+++++ .|.|||+++|+.
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 8889999864 599999999995
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.67 E-value=1.3e-17 Score=171.44 Aligned_cols=135 Identities=22% Similarity=0.256 Sum_probs=92.6
Q ss_pred ceeeceEE-------EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-cCcEEEEcCCCCCCC
Q 010938 70 NVLEGLTG-------YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-FGTAAYVTQDDNLIG 141 (497)
Q Consensus 70 ~iL~~vs~-------~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~ 141 (497)
..|+++.+ ...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....++++|......
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~ 181 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRD 181 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTT
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccc
Confidence 34555554 67899999999999999999999999998763 146665433332211 112234444321111
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010938 142 TLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEP 221 (497)
. ++-.+ +||++|..+|++|++|||
T Consensus 182 ~----------------------------------------------------~~~~~----~La~aL~~~PdvillDEp 205 (356)
T 3jvv_A 182 T----------------------------------------------------LGFSE----ALRSALREDPDIILVGEM 205 (356)
T ss_dssp B----------------------------------------------------SCHHH----HHHHHTTSCCSEEEESCC
T ss_pred c----------------------------------------------------CCHHH----HHHHHhhhCcCEEecCCC
Confidence 1 12111 899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCC
Q 010938 222 TSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGG 271 (497)
Q Consensus 222 TsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G 271 (497)
| |..+ ++.+.+++..|+|||+++|+.+ .+ ..+||++.|..|
T Consensus 206 ~---d~e~----~~~~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 206 R---DLET----IRLALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp C---SHHH----HHHHHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred C---CHHH----HHHHHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 9 6555 4444455677999999999964 44 889999998654
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.4e-18 Score=182.02 Aligned_cols=163 Identities=17% Similarity=0.145 Sum_probs=97.7
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcE
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTA 130 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i 130 (497)
.|.++||++.| +.+.+++++||+| +|+|+||||||||+++|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQV-----YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCT-----TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeE-----CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 48889998887 3577999999998 99999999999999999998764311 2222222211 1112457
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHH
Q 010938 131 AYVTQDDNLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL 210 (497)
Q Consensus 131 ~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~ 210 (497)
+|++|++.+++.+||.||+.++.... .......+.+.++ ..++.+++||++|||+++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQM 134 (418)
T ss_dssp ECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 89999988888899999988864321 0000011112221 135677888999999999
Q ss_pred hCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010938 211 MRPR---LLFLDEPT-SGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 211 ~~p~---lllLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
.+|+ +|++|||| .|||+... +.++.+.. +.+||+++|..
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred cCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 9999 99999999 69998873 44455544 68888888763
No 112
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=1.1e-16 Score=150.39 Aligned_cols=175 Identities=11% Similarity=0.094 Sum_probs=99.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCCC
Q 010938 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL-----ASNAFLSGTILLNGHKTKLS 126 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~-----~~~~~~~G~I~~~G~~~~~~ 126 (497)
|+++|+++.|. ..+|++ +.+.+|..++|+|+||||||||++.|+|.. .| ..|.+.+.+.-.. .
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~~-~ 71 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFEV-A 71 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEE-E
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEEe-c
Confidence 78999999983 357888 889999999999999999999999999987 44 3566543221000 0
Q ss_pred cCcEEEEcCCCCCC----CCCC---HHHHHHHHhhc-c----------CCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 010938 127 FGTAAYVTQDDNLI----GTLT---VRETISYSARL-R----------LPDKMPWSEKRTLVERTIIEMGLQDCADTVIG 188 (497)
Q Consensus 127 ~~~i~yv~Q~~~l~----~~lT---V~e~l~~~~~~-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 188 (497)
...- +.+.+.+. +.-. .+..+...... . .....+ .....+.+++...++.... ++
T Consensus 72 -~~~~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~---v~ 144 (210)
T 1pui_A 72 -DGKR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--DLDQQMIEWAVDSNIAVLV---LL 144 (210)
T ss_dssp -TTEE-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHHTTCCEEE---EE
T ss_pred -CCEE-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--hhHHHHHHHHHHcCCCeEE---EE
Confidence 0011 11111110 0000 11122221110 0 001111 1223455666667765421 12
Q ss_pred CccCCCCCHHHHHH-HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 010938 189 NWHLRGISGGERRR-VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRT 246 (497)
Q Consensus 189 ~~~~~~LSGGerqR-v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~t 246 (497)
+ +...+|+||||| +..+++++.+|.++++|||||++|.....++++.|.++..+|.|
T Consensus 145 n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 T-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp E-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred e-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 2 334699999999 89999999999999999999999999999999999998766544
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.61 E-value=1.7e-15 Score=140.17 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=68.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEE
Q 010938 191 HLRGISGGERRRVSIALEILM----RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 191 ~~~~LSGGerqRv~IA~aL~~----~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~ 266 (497)
.+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|++||+. .+...||+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 346799999999999999974 4699999999999999999999999999865 46899999994 5678999998
Q ss_pred Eee--CCe
Q 010938 267 LLS--GGK 272 (497)
Q Consensus 267 ~L~--~G~ 272 (497)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 664 564
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.61 E-value=1.7e-17 Score=159.48 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=99.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CcCcEEEEcCCCCCCCCCCH----HHH
Q 010938 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTV----RET 148 (497)
Q Consensus 74 ~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV----~e~ 148 (497)
+-.-..++|++++|+||||||||||+++|+|+.+|+ ..+|.|.+.+.+... ..+.++|++|++..|+.+++ .|+
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 334467899999999999999999999999998752 258999998876432 23457899997655544433 122
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010938 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
+.+. |+. .+.| +++ +..++..++++||| ||+.
T Consensus 87 ~~~~-----------------------------------~~~--yg~~---~~~---v~~~l~~G~illLD-----LD~~ 118 (219)
T 1s96_A 87 AEVF-----------------------------------GNY--YGTS---REA---IEQVLATGVDVFLD-----IDWQ 118 (219)
T ss_dssp EEET-----------------------------------TEE--EEEE---HHH---HHHHHTTTCEEEEE-----CCHH
T ss_pred HHHH-----------------------------------hcc--CCCC---HHH---HHHHHhcCCeEEEE-----ECHH
Confidence 1111 000 0111 121 34555668999999 9999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHHH
Q 010938 229 AAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEFF 286 (497)
Q Consensus 229 ~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f 286 (497)
++..+.+.+. ++.||++++|++ .++.+ |+ +..| .++++++...+
T Consensus 119 ~~~~i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 119 GAQQIRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHHHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 9999999875 589999999995 44544 43 6677 56777766544
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.59 E-value=1.1e-14 Score=137.79 Aligned_cols=155 Identities=21% Similarity=0.163 Sum_probs=100.9
Q ss_pred cceeeceE-EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHH
Q 010938 69 HNVLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 69 ~~iL~~vs-~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
...|+++. +-+++|++++|+||||||||||++.|++ ..+ .+ +.|+..+..+ +...
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~---------------v~~i~~~~~~----~~~~ 61 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KK---------------VAYVDTEGGF----SPER 61 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SE---------------EEEEESSCCC----CHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---Cc---------------EEEEECCCCC----CHHH
Confidence 34577776 3799999999999999999999999998 221 22 2333333211 2211
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH--HHHHHHHHHHHhC-CCEEEEeCCCCC
Q 010938 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE--RRRVSIALEILMR-PRLLFLDEPTSG 224 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe--rqRv~IA~aL~~~-p~lllLDEPTsg 224 (497)
-....... .... +++++.+. +...|+++ ++++..+++++.+ |+++++||||+.
T Consensus 62 ~~~~~~~~----~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LVQMAETR----GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHTT----TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHhc----CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11111110 1111 11222221 11345554 6788888999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHh-CCCEEEEEeCCCCh------------HHHhcCCeEEEeeCC
Q 010938 225 LDSAA--------AFFVTQTLRCLSR-DGRTVIASIHQPSS------------EVFELFDRLYLLSGG 271 (497)
Q Consensus 225 LD~~~--------~~~i~~~L~~l~~-~g~tvI~~tH~~~~------------~i~~~~D~v~~L~~G 271 (497)
+|+.. ...+++.|+++++ .|.|||+++|.... .+...||.+++|+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 3456666888876 48999999998531 567899999999754
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.58 E-value=4e-19 Score=165.52 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=112.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDKM 161 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~ 161 (497)
|++++|+||||||||||+++|++ +. +|.+.++|.+.... ...++++|.....+.+++++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFL---- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHH----
Confidence 68999999999999999999997 32 68899998653221 234567776544455678888776543210
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---ccCCCC--CHHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHH
Q 010938 162 PWSEKRTLVERTIIEMGLQDCADTVIGN---WHLRGI--SGGERRRVSIAL------EILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 162 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SGGerqRv~IA~------aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
. -+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+...
T Consensus 71 -------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 71 -------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp -------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred -------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0 0100011110000 011234 888888888888 8999998888884 8999888
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCC-CChHHHhcCCeEEEeeCCeEEEEeCchh
Q 010938 231 FFVTQTLRCLSRDGRTVIASIHQ-PSSEVFELFDRLYLLSGGKTVYFGETSA 281 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 281 (497)
.. ++.++.+...+.++|.++|. + +++.++||+|+ ++|+++..|+++-
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDP 181 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC-----
T ss_pred HH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCc
Confidence 88 88888876667899999998 6 47889999998 9999999988754
No 117
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.55 E-value=1.1e-18 Score=179.94 Aligned_cols=167 Identities=15% Similarity=0.031 Sum_probs=102.8
Q ss_pred eeeceEEEEeC--CeEEEEECCCCChHHHHHHHHHcCCCCCCCce----eEEEECCEeCCCCcCcEEEEcCCCCCCCCCC
Q 010938 71 VLEGLTGYAEP--GTLTALMGPSGSGKSTLLDALSSRLASNAFLS----GTILLNGHKTKLSFGTAAYVTQDDNLIGTLT 144 (497)
Q Consensus 71 iL~~vs~~i~~--Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~----G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lT 144 (497)
+.+.|++.+.+ |+.++|+||||||||||+++|+|++++. + |+|++++... ..+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 46789999999 9999999999999999999999999884 6 6665532100 0000111112
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCccCCCCCHHHHHHHHHHHHHH-hCCCEEEEeC-
Q 010938 145 VRETISYSARLRLPDKMPWSEKRTLVERTIIEM--GLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRPRLLFLDE- 220 (497)
Q Consensus 145 V~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~-~~p~lllLDE- 220 (497)
. +++.+.... .......+.+.+ +..+..++ .+..+|+|++||..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q~----------~~~~~~t~~~nl~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQR----------YIDYAVRHSHKIAFIDTDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHHH----------HHHHHHHHCSSEEEESSCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHHH----------HHHHHHhccCCEEEEeCCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 2 333332110 000000000000 00111111 12246777788888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCCeEEEee
Q 010938 221 --PT------SGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 221 --PT------sgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
|+ .++|+..+..+.+.|+++.+ .|.+||+++|. .+..+++|++.+|+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~--~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP--SYLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS--SHHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Confidence 65 58999999999999998765 48999999976 35667777766654
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.55 E-value=1.7e-17 Score=154.22 Aligned_cols=151 Identities=14% Similarity=0.051 Sum_probs=94.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCcCcEEEEcCCCCCCCCCCHHHHHHHHhh
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK---LSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~---~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (497)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.+.. .....++|++|+.. +.+||.+++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 33 799999987531 11233567777543 45688898877543
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 010938 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVT 234 (497)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~ 234 (497)
........ ..++.++..+++..... . +..+..+|+|++||+.++|++.++|+++ +|+.....+.
T Consensus 78 ~~~~~~~~-----~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGYF-----VILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSCE-----EEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCCe-----EEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 21000000 00000011111111110 0 1123469999999999999999999876 6888877777
Q ss_pred HHHHHHHhCCCEEEEEe
Q 010938 235 QTLRCLSRDGRTVIASI 251 (497)
Q Consensus 235 ~~L~~l~~~g~tvI~~t 251 (497)
+.++.+...+..+|.++
T Consensus 142 ~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVS 158 (191)
T ss_dssp HHTTCCGGGGGGEEECT
T ss_pred HHHhccCcccccEEECC
Confidence 77766543333344443
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=8e-17 Score=168.43 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=116.8
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeE--EEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCc
Q 010938 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGT 129 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~--~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~ 129 (497)
+++++ ++.| +..+ |++||+++++|++ ++|+||||||||||+|+|+|..- .|.-.- ........+.
T Consensus 17 l~~~~-~~~y-----~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGF-----DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-C-----C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEE
T ss_pred EEEee-EEEE-----CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceEee
Confidence 45555 5555 2345 9999999999999 99999999999999999999842 222111 0011111246
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHH----HHHHHHHHHHHHc-CCCc----ccccc----cc--CccCCC
Q 010938 130 AAYVTQDDNLIGTLTVRETISYSARLRLPDKMPWS----EKRTLVERTIIEM-GLQD----CADTV----IG--NWHLRG 194 (497)
Q Consensus 130 i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~~~~~----~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~ 194 (497)
++|++|++.+++.+||.||+.|+.... ....+. .......+.+... ++.. ..|+. +. ....++
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEEeecCccccccchhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 899999999888899999987763211 000001 1233455556554 5431 12322 11 001135
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEeCC
Q 010938 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC-LSRDGRTVIASIHQ 253 (497)
Q Consensus 195 LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvI~~tH~ 253 (497)
|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 66666 7899999999999999999999999999999999986 77789999988764
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.52 E-value=2.5e-15 Score=154.82 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=99.7
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--CcCcEEEEc-CCCCCCCCCCHHH
Q 010938 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT-KL--SFGTAAYVT-QDDNLIGTLTVRE 147 (497)
Q Consensus 72 L~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~-~~--~~~~i~yv~-Q~~~l~~~lTV~e 147 (497)
++++|+.+++|++++|+||||||||||+++|+|+++|. +|.|+++|... .. ..+.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 39999999999999999999999999999999999885 89999998531 11 235678888 54331
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 010938 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDS 227 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~ 227 (497)
+++++..+|..|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222355666667777899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCe
Q 010938 228 AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGK 272 (497)
Q Consensus 228 ~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~ 272 (497)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777554567899999953 678899999887663
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.52 E-value=1.8e-15 Score=156.42 Aligned_cols=130 Identities=19% Similarity=0.277 Sum_probs=95.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CcCcEEEEcCCCCCCCCCCHHHHH
Q 010938 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
+|++++ +++|++++|+||||||||||+++|+|++++. .+|.|.+.|.+... ....++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 7899999999999999999999999998762 16999777655432 123467777731
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+|+.. ..+ +.+|+++|..+|+++++|||+ |+.+
T Consensus 191 ---------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 22211 124 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEee
Q 010938 230 AFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLS 269 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~ 269 (497)
... .++. +..|.+|+.++|+. + +...+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~-~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTN-T-AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCC-S-HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcc-h-HHHHHHHHHHhc
Confidence 443 3443 35689999999994 3 778889887764
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.50 E-value=5.7e-17 Score=147.93 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=65.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHH
Q 010938 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.+.+++++||++++|++++|+||||||||||+++|+|.+ |. +|+|.++|.+.........|++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 467899999999999999999999999999999999998 74 8999999976421111012799998888 899999
Q ss_pred HHHH
Q 010938 148 TISY 151 (497)
Q Consensus 148 ~l~~ 151 (497)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
No 123
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.50 E-value=1.7e-14 Score=138.58 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=88.6
Q ss_pred eeceE-EEEeCCeEEEEECCCCChHHHHHHHHHc--CCCCC--CCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHH
Q 010938 72 LEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSS--RLASN--AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 72 L~~vs-~~i~~Ge~~~IlG~nGaGKSTLL~~L~G--~~~~~--~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
|+.+- +-+++|++++|+||||||||||++.|++ ..++. ....|.+++++.. .+ ...
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~ 73 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPE 73 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHH
Confidence 44433 5689999999999999999999999999 44431 0014555555432 10 111
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH-HHHHHHHH--hCCCEEEEeCCCC
Q 010938 147 ETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR-VSIALEIL--MRPRLLFLDEPTS 223 (497)
Q Consensus 147 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR-v~IA~aL~--~~p~lllLDEPTs 223 (497)
+.......+. ... +++++.+. .....++.+... +.-+.+++ .+|+++++|||++
T Consensus 74 ~~~~~~~~~g----~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 74 RLLAVAERYG----LSG-------SDVLDNVA------------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHTT----CCH-------HHHHHTEE------------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHcC----CCH-------HHHhhCeE------------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1111111111 111 11122111 112345555432 33334444 5899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHh-CCCEEEEEeCCCChHH-------------------HhcCCeEEEeeCC
Q 010938 224 GLDSA-------A-----AFFVTQTLRCLSR-DGRTVIASIHQPSSEV-------------------FELFDRLYLLSGG 271 (497)
Q Consensus 224 gLD~~-------~-----~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i-------------------~~~~D~v~~L~~G 271 (497)
.+|+. . ...++..|+++++ .|.|||+++|... +. ..+||.+++|+.|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 3456666777665 4999999999642 22 2279999999865
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.49 E-value=5.5e-17 Score=157.77 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=100.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHH---cCCCCCCCceeEEEECCEeCCC-CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 81 PGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTILLNGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~---G~~~~~~~~~G~I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
++++++|+||||||||||+++|+ |+..++ +|+|.++|.+... ....+.+++|+..+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 998774 7988887754211 1123455678888888889999998753210
Q ss_pred C-----CCCCCHHHHHHHHHHHHHHcCCC--ccc-------cccccCccCCCCCHHHHHHHHHHHHH-HhCCCEEEEe--
Q 010938 157 L-----PDKMPWSEKRTLVERTIIEMGLQ--DCA-------DTVIGNWHLRGISGGERRRVSIALEI-LMRPRLLFLD-- 219 (497)
Q Consensus 157 ~-----~~~~~~~~~~~~v~~~l~~lgL~--~~~-------~~~vg~~~~~~LSGGerqRv~IA~aL-~~~p~lllLD-- 219 (497)
. -...+... ..++.+....... -.. -..+.+..+..||| |+ ++| +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 00111111 1122221111111 000 01111224457999 66 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhCC
Q 010938 220 --EPTSGLDSAAAFFVTQTLRCLSRDG 244 (497)
Q Consensus 220 --EPTsgLD~~~~~~i~~~L~~l~~~g 244 (497)
|||++||..+...+.+.|+.+.+++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887653
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.49 E-value=1.3e-14 Score=148.77 Aligned_cols=121 Identities=19% Similarity=0.112 Sum_probs=88.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC-CCCCceeEEEEC-CEeCC-CCcCcEEEEcCCCCCCCCCCHHH
Q 010938 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA-SNAFLSGTILLN-GHKTK-LSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~-~~~~~~G~I~~~-G~~~~-~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.++++++. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.... .....++|++|+..++++.+|+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 46666664 4899999999999999999999999998 75 8999987 75432 23457899999998888889988
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 010938 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEI 209 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL 209 (497)
+ . + ...+.++....+.++++.+|+.+..+... .++| ||+||++||+++
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 4 1 1 12445566677888999999987777644 5799 999999999864
No 126
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.49 E-value=1.1e-13 Score=143.03 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=67.5
Q ss_pred cCCCCCHHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010938 191 HLRGISGGERRRV------SIALEILMR-PRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 191 ~~~~LSGGerqRv------~IA~aL~~~-p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
.+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++ ++..+||
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCC
Confidence 4568999999988 567888999 999999999999999999999999998743 46999999996 3678999
Q ss_pred eEEEee
Q 010938 264 RLYLLS 269 (497)
Q Consensus 264 ~v~~L~ 269 (497)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 127
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.48 E-value=4.7e-18 Score=172.16 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=100.8
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC--------CCCCCceeEEEECCEeCCCC--------------------cCcEEEE-
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRL--------ASNAFLSGTILLNGHKTKLS--------------------FGTAAYV- 133 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~--------~~~~~~~G~I~~~G~~~~~~--------------------~~~i~yv- 133 (497)
++++|+|+||||||||||.|+|.. .++ .|+|.+||.+.... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 443 89999999864321 1124555
Q ss_pred --cCCCCCCCCCCHHHHHHHHhhccCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHH
Q 010938 134 --TQDDNLIGTLTVRETISYSARLRLPDKM---PWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALE 208 (497)
Q Consensus 134 --~Q~~~l~~~lTV~e~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 208 (497)
+|+..+++..+|.||..++......... +.......++.++..+++.+..+.. .++|+||+||+..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEE
Confidence 5666555566777766543110000000 0000000011122223443333332 2589999999998888
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010938 209 ILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 209 L~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
++.+|+++ ||| ..+.+.|+++. .+.||++++|++. ++..++|
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 88999887 888 67888888875 5899999999864 3444443
No 128
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.47 E-value=2.9e-16 Score=145.12 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=89.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C------C-c-CcEE----EEcCCCCCCCCCCHHHHH
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-L------S-F-GTAA----YVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-~------~-~-~~i~----yv~Q~~~l~~~lTV~e~l 149 (497)
++++|+|+||||||||+++|+|++++.....|.|.++|.+.. . . + +.++ +++|+..+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999998874334799999998621 1 1 1 2355 788876655 100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEE-------EEeCC
Q 010938 150 SYSARLRLPDKMPWSEKRTLVERTIIE-MGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLL-------FLDEP 221 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ll-------lLDEP 221 (497)
. . .+....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~-~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---S-EEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---C-HHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---C-hhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 0 1111235556655 43 46898886 59999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 010938 222 TSG---LDSAAAFFVTQTLRCLSRDG 244 (497)
Q Consensus 222 Tsg---LD~~~~~~i~~~L~~l~~~g 244 (497)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34455677788776665554
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.44 E-value=5e-15 Score=156.99 Aligned_cols=152 Identities=13% Similarity=0.159 Sum_probs=104.5
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CcCcEEEEcCCCCCC
Q 010938 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----------SFGTAAYVTQDDNLI 140 (497)
Q Consensus 72 L~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----------~~~~i~yv~Q~~~l~ 140 (497)
-+++||++++|++++|+|+||||||||+++|+|++.+. +|+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999999875 7999998765321 124589999998888
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHH-hCC-CEEEE
Q 010938 141 GTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL-MRP-RLLFL 218 (497)
Q Consensus 141 ~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~-~~p-~lllL 218 (497)
+.+||++++.++...... .+ +++..|+.+... .+-.-.+|++.+++++. ..| .+||.
T Consensus 360 p~~tV~e~l~~a~~~~~D----------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNID----------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTTCS----------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC----------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 889999999987532110 00 112222221111 11122357888888764 457 45555
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Q 010938 219 DEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQ 253 (497)
Q Consensus 219 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~ 253 (497)
..||+|.|.. +.++.+.+ -|.|.|++||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 5588886654 33444443 48899999994
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.43 E-value=1.4e-14 Score=147.23 Aligned_cols=140 Identities=13% Similarity=0.069 Sum_probs=98.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------cCcEEEEcCCCCCCCCCCHHHH
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----------FGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
++|++++|+||||||||||++.|+|++++. +|+|.++|.+.... ...+.|++|...++|.++|+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999999885 89999999874211 1235699999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010938 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
+.++....... .+++..|+.+..+..+ .+|| .+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d~------------vliDtaG~~~~~~~l~-----~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGIDV------------VLIDTAGRSETNRNLM-----DEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCSE------------EEEEECCSCCTTTCHH-----HHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccchh------------hHHhhccchhHHHHHH-----HHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 98764321000 0112223322222211 1233 48899988888888885543
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCC
Q 010938 229 AAFFVTQTLRCLSR-DGRTVIASIHQ 253 (497)
Q Consensus 229 ~~~~i~~~L~~l~~-~g~tvI~~tH~ 253 (497)
..+++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 355666666664 58999999996
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.42 E-value=2.2e-14 Score=132.35 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=77.9
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010938 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 76 s~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
++.+.+|+.++|+||||+|||||+++|++.+.+. +|. .+.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~-------------~~~~----------~~~~~~~~~~--- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK---KGI-------------RGYF----------FDTKDLIFRL--- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH---SCC-------------CCCE----------EEHHHHHHHH---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH---cCC-------------eEEE----------EEHHHHHHHH---
Confidence 3456789999999999999999999999987532 231 0112 2333322211
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHH
Q 010938 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVT 234 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTs-gLD~~~~~~i~ 234 (497)
......-. .. -....+.+|++|+||||++ ++|+..+..+.
T Consensus 83 ---------------~~~~~~~~----------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 83 ---------------KHLMDEGK----------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp ---------------HHHHHHTC----------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred ---------------HHHhcCch----------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 11111000 00 1223355999999999995 99999999999
Q ss_pred HHHHHHHhCCCEEEEEeCCCChH
Q 010938 235 QTLRCLSRDGRTVIASIHQPSSE 257 (497)
Q Consensus 235 ~~L~~l~~~g~tvI~~tH~~~~~ 257 (497)
+++....++|+++|++||.+..+
T Consensus 124 ~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 124 YIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHHHHTTCEEEEECCCCSCC
T ss_pred HHHHHHHHcCCCEEEEcCCChhH
Confidence 99999887899999999997543
No 132
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.42 E-value=3.2e-13 Score=142.02 Aligned_cols=75 Identities=23% Similarity=0.236 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEe
Q 010938 193 RGISGGERRRVSIALEIL----MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLL 268 (497)
Q Consensus 193 ~~LSGGerqRv~IA~aL~----~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L 268 (497)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 58999999999999999999999999999876688999999994 567889999998
Q ss_pred e
Q 010938 269 S 269 (497)
Q Consensus 269 ~ 269 (497)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.40 E-value=7.3e-15 Score=153.78 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=96.0
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCC----------CCCCC
Q 010938 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQD----------DNLIG 141 (497)
Q Consensus 72 L~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~----------~~l~~ 141 (497)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.......++++.++ +.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 479999999999999999999999999999998742 11222211111223444433 33222
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHH--HHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEe
Q 010938 142 TLTVRETISYSARLRLPDKMPWSEK--RTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLD 219 (497)
Q Consensus 142 ~lTV~e~l~~~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLD 219 (497)
.. .+ . ..+..... .++++.++..+++. +. .+..||+|++|++.+|++|+..|.++++
T Consensus 218 ~a--~~-------~---~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl- 276 (416)
T 1udx_A 218 GA--SE-------G---KGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL- 276 (416)
T ss_dssp CG--GG-------S---CCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE-
T ss_pred ch--hh-------h---hhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE-
Confidence 10 00 0 01111100 01112222223332 22 3456999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCCChHHHhcCCeE
Q 010938 220 EPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRL 265 (497)
Q Consensus 220 EPTsgLD~~~~~~i~~~L~~l-~~~g~tvI~~tH~~~~~i~~~~D~v 265 (497)
+++|...+ ..++.+++. .+.|.+++++|..-...+.++++.+
T Consensus 277 ---NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 277 ---NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp ---ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred ---ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999877 555555554 3457777766543234455555443
No 134
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.40 E-value=8e-15 Score=146.58 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=88.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhh---cc
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR---LR 156 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~---~~ 156 (497)
+++.+++|.|+||||||||.+.|++++.+ .| . ..+.+.+|+|++.+++. ++++|+.+... +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 46789999999999999999999998865 23 0 12345666999988876 89999988631 10
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--c--cccccccCccCCCCCHHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHH
Q 010938 157 LPDKMPWSEKRTLVERTIIEMGLQ--D--CADTVIGNWHLRGISGGERRRVSIA--LEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 157 ~~~~~~~~~~~~~v~~~l~~lgL~--~--~~~~~vg~~~~~~LSGGerqRv~IA--~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
...+.+.........+.++.+.-. . .....+. .+...+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 000111111123455566665432 0 0111122 24468999999999997 555 999999999999999853
No 135
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.40 E-value=8e-16 Score=157.08 Aligned_cols=172 Identities=18% Similarity=0.139 Sum_probs=112.9
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010938 52 LTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL------ 125 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------ 125 (497)
|+.+|+++.| ..+.+|+++|+++++|++++|+||||||||||+++|+|++.|. +|+|.+.|.+...
T Consensus 30 ie~~~~~~~~-----~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRA-----AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHH-----HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCC
T ss_pred HeeCCccccc-----ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccc
Confidence 4455555555 2357999999999999999999999999999999999998875 8999999976421
Q ss_pred ---CcCcEEEEcCCCCCCCCCC------------HHHHHHHH-----------------------------hhccCCCCC
Q 010938 126 ---SFGTAAYVTQDDNLIGTLT------------VRETISYS-----------------------------ARLRLPDKM 161 (497)
Q Consensus 126 ---~~~~i~yv~Q~~~l~~~lT------------V~e~l~~~-----------------------------~~~~~~~~~ 161 (497)
....++|++|++.+++..+ +.|.+... ..+..+ .
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~-~- 179 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLP-G- 179 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECS-C-
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcC-C-
Confidence 1345899999988775321 23332111 000000 0
Q ss_pred CHHHHH---HHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHH
Q 010938 162 PWSEKR---TLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILM------RPRLLFLDEPTSGLDSAAAFF 232 (497)
Q Consensus 162 ~~~~~~---~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~------~p~lllLDEPTsgLD~~~~~~ 232 (497)
...+.+ ..+.+....+.+ +..|.. ....+|+|++|++..|++++. +|++++ ||++|......
T Consensus 180 ~~~~~~~i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~ 250 (337)
T 2qm8_A 180 AGDELQGIKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDS 250 (337)
T ss_dssp C------CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHH
T ss_pred CcccHHHHHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHH
Confidence 000000 001111111111 111210 113579999999999999987 688877 99999999999
Q ss_pred HHHHHHHHHh
Q 010938 233 VTQTLRCLSR 242 (497)
Q Consensus 233 i~~~L~~l~~ 242 (497)
+++.|.++..
T Consensus 251 L~~~I~~~~~ 260 (337)
T 2qm8_A 251 LWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 136
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.39 E-value=1.7e-13 Score=123.54 Aligned_cols=97 Identities=20% Similarity=0.316 Sum_probs=72.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHH
Q 010938 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~-------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT-------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC--------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH--------
Confidence 456666 8999999999999999999999998754 34 11234433221100
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 010938 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAA 229 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~ 229 (497)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66656
Q ss_pred HHHHHHHHHHHHhCCCE-EEEEeCCCC
Q 010938 230 AFFVTQTLRCLSRDGRT-VIASIHQPS 255 (497)
Q Consensus 230 ~~~i~~~L~~l~~~g~t-vI~~tH~~~ 255 (497)
+..+.+++..+.++|++ +|+++|.+.
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 88999999998877888 899999754
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.36 E-value=3e-14 Score=143.21 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=81.3
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----cCcEEEEcCCCCCC-----CCCCH
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDNLI-----GTLTV 145 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~-----~~~i~yv~Q~~~l~-----~~lTV 145 (497)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.... .+.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 88875 899999 88764321 13579999998653 78899
Q ss_pred HHHH--HHHh----hccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHH
Q 010938 146 RETI--SYSA----RLRLPDKMPWSEKRTLVERTIIEMGLQD-CADTVIGNWHLRGISGGERRRVSIAL 207 (497)
Q Consensus 146 ~e~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~ 207 (497)
|++ .|.. .++.....+..+...++.++++.++|.+ ..+. +++.|||.++|++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhc
Confidence 888 4431 0111111112223356889999999986 5555 44579998899999987
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.33 E-value=4.2e-16 Score=163.37 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=91.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------cCcEEEEc------
Q 010938 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS---------FGTAAYVT------ 134 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv~------ 134 (497)
.+|+++ + .++|++++|+|||||||||||++|+|.+++. +|.|.+.|.++... ...+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 367777 4 3799999999999999999999999998875 89999988764311 12344544
Q ss_pred ---CCCCC--CCC----CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHH
Q 010938 135 ---QDDNL--IGT----LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVS 204 (497)
Q Consensus 135 ---Q~~~l--~~~----lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 204 (497)
|++.+ ++. .|+.+++.++..-+.. .......... +.+.|..+|+.+.. .+..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~-------~~~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL-------ISSSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH-------HHHHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH-------HHHHHHHHHHHH--
Confidence 88765 344 5899998876421100 0000001112 22346778887542 234799999999
Q ss_pred HHHHHHhCCCEEEE
Q 010938 205 IALEILMRPRLLFL 218 (497)
Q Consensus 205 IA~aL~~~p~lllL 218 (497)
||++|+.+|++..-
T Consensus 302 LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEECTTTCEEEE
T ss_pred hhhhhcCCCCccCC
Confidence 99999999998763
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=8.2e-13 Score=134.29 Aligned_cols=134 Identities=18% Similarity=0.154 Sum_probs=75.3
Q ss_pred EEEECCCCChHHHHHHHHHc-CCCCCCCceeEEEECCEeCCC---CcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010938 85 TALMGPSGSGKSTLLDALSS-RLASNAFLSGTILLNGHKTKL---SFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 85 ~~IlG~nGaGKSTLL~~L~G-~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
+.|.||||+|||||+++|+| +..+. .|.+.++|.+... ....++|++|.+.+.-..+ + .. .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---N 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---C
Confidence 89999999999999999999 66765 7999999875321 1345778888764321100 0 00 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010938 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
.... .+.+.++.+......+..+ .+|| +..+|+++|+|||++ ||+.++..+.+.|.+.
T Consensus 104 ~~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 0111 1333333332111111111 3566 788999999999999 9999999999999886
Q ss_pred HhCCCEEEEEeCCCCh
Q 010938 241 SRDGRTVIASIHQPSS 256 (497)
Q Consensus 241 ~~~g~tvI~~tH~~~~ 256 (497)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 36899999999753
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.32 E-value=2.3e-15 Score=161.66 Aligned_cols=177 Identities=16% Similarity=0.166 Sum_probs=110.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe-CCC-CcCcEEEEcCCCCCCCCCCHH
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK-TKL-SFGTAAYVTQDDNLIGTLTVR 146 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~-~~~-~~~~i~yv~Q~~~l~~~lTV~ 146 (497)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|+++|.+ ... ....++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999886 8999999865 221 123466666654322234555
Q ss_pred HHHHHHhhccCC----CCCCHHHHHH------------------HHHHHHHHcCCC-----c----cccccccCccCCCC
Q 010938 147 ETISYSARLRLP----DKMPWSEKRT------------------LVERTIIEMGLQ-----D----CADTVIGNWHLRGI 195 (497)
Q Consensus 147 e~l~~~~~~~~~----~~~~~~~~~~------------------~v~~~l~~lgL~-----~----~~~~~vg~~~~~~L 195 (497)
+.+..+.+.... ..+...+... .+.++++++... . ..+..+ .....+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~ 401 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWV 401 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEE
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEE
Confidence 444433322100 0111111100 122333333321 1 111111 122357
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EeCCCChHHHhcCC
Q 010938 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIA--SIHQPSSEVFELFD 263 (497)
Q Consensus 196 SGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~--~tH~~~~~i~~~~D 263 (497)
||||+||+++|. + | |+|||+.....+++.|.++...|.|+++ +||+. .++...|+
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHHT
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHcC
Confidence 999999987752 2 7 9999998887777777777666888875 88984 56666653
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.29 E-value=8.1e-12 Score=130.08 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=90.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCChHHHHHHHH--HcCCCCCC--CceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCH
Q 010938 71 VLEGL-TGYAEPGTLTALMGPSGSGKSTLLDAL--SSRLASNA--FLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTV 145 (497)
Q Consensus 71 iL~~v-s~~i~~Ge~~~IlG~nGaGKSTLL~~L--~G~~~~~~--~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV 145 (497)
-|+.+ .+-+++|++++|+||||||||||++.| .+..++.. ...+.+++++.. .+ ..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~ 226 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RP 226 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CH
Confidence 34443 357999999999999999999999944 56654420 012355555432 11 11
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCH-HHHHHHHHHHHHH--hCCCEEEEeCCC
Q 010938 146 RETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISG-GERRRVSIALEIL--MRPRLLFLDEPT 222 (497)
Q Consensus 146 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG-GerqRv~IA~aL~--~~p~lllLDEPT 222 (497)
......+..+. +.. +.+++.+ .+. +..++ .+.+.+.-+..++ .+|+++++||||
T Consensus 227 ~rl~~~a~~~g----l~~-------~~vleni--------~~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 227 VRLVSIAQRFG----LDP-------DDALNNV--------AYA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHTT----CCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHcC----CCh-------HhHhhcE--------EEe----ccCChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 11000111110 110 0111111 111 11222 2233444344443 479999999999
Q ss_pred CCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEeCCCC------------------hHHHhcCCeEEEeeCC
Q 010938 223 SGLDSAAA------------FFVTQTLRCLSRD-GRTVIASIHQPS------------------SEVFELFDRLYLLSGG 271 (497)
Q Consensus 223 sgLD~~~~------------~~i~~~L~~l~~~-g~tvI~~tH~~~------------------~~i~~~~D~v~~L~~G 271 (497)
+.+|+... ..+++.|++++++ |.|||+++|... ..+...+|.++.|+.+
T Consensus 284 ~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 284 ALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 99997543 6788888888764 999999999821 2346778999999865
Q ss_pred e
Q 010938 272 K 272 (497)
Q Consensus 272 ~ 272 (497)
+
T Consensus 364 ~ 364 (400)
T 3lda_A 364 K 364 (400)
T ss_dssp S
T ss_pred C
Confidence 3
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.29 E-value=1e-14 Score=138.17 Aligned_cols=163 Identities=23% Similarity=0.198 Sum_probs=89.6
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..++. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 5789999999999999999999999998752 2 124555555443332 222221100000001
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 010938 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA-LEILMRPRLLFLDEPTSGLDSAAAFFVTQTL 237 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA-~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L 237 (497)
..... ....+.+..+...+..+..+.+ +...+|+||+||+++| ++++.++.++++|||.-
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 11111 1122333333222222333333 2345799999999998 77888888878888731
Q ss_pred HHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeCCeEEEEeCchhHHHH
Q 010938 238 RCLSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGETSAAFEF 285 (497)
Q Consensus 238 ~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 285 (497)
..+...--.+|++.+.....+.+.+.|. +..|. +.+++...
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~ 182 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVAR 182 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHH
Confidence 0112222367777777433355666662 34454 45555443
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=4.6e-15 Score=153.99 Aligned_cols=167 Identities=16% Similarity=0.191 Sum_probs=118.2
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC------------CCCCCCceeEEEECCEeCC------CCcCc---EEEEcCC
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSR------------LASNAFLSGTILLNGHKTK------LSFGT---AAYVTQD 136 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~------------~~~~~~~~G~I~~~G~~~~------~~~~~---i~yv~Q~ 136 (497)
.+++|..++|+|+||||||||+|+|+|. ..| .+|.|.++|.... ...+. ..++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 4578999999999999999999999993 234 4899999984311 11112 3477888
Q ss_pred CCCCCCCCHHHHH--HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCC-
Q 010938 137 DNLIGTLTVRETI--SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP- 213 (497)
Q Consensus 137 ~~l~~~lTV~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p- 213 (497)
+.+++.++..|++ .|...++. ++.++..++..+ +. .+..+||+. +|
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~ 141 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPI 141 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHH
T ss_pred cccccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccc
Confidence 8888877776655 33333221 111111111111 11 223366653 89
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCCChHHHhcCCeEE-EeeCC-eEEEEeCchh
Q 010938 214 -RLLFLDEPTSGLDSAAAFFVTQTLRCL-SRDGRTVIASIHQPSSEVFELFDRLY-LLSGG-KTVYFGETSA 281 (497)
Q Consensus 214 -~lllLDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvI~~tH~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~~ 281 (497)
+++++|||+.++|+......++.++.+ .+.|.|++ +|.. .++.++||++. +|.+| ++++.|+.++
T Consensus 142 ~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 142 RDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 999999999999999999999999998 66777764 9994 68899999999 99999 8887776543
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.20 E-value=6.8e-13 Score=133.16 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=69.2
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----cCcEEEEcCCCC-----------
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS-----FGTAAYVTQDDN----------- 138 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~-----~~~i~yv~Q~~~----------- 138 (497)
++.+|++++|+||||||||||||+|+|+..|. +|+|.+ +|++.... .+.++||+|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999886 899999 88764321 135799999975
Q ss_pred -----CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCCCCCH
Q 010938 139 -----LIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQ-DCADTVIGNWHLRGISG 197 (497)
Q Consensus 139 -----l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 197 (497)
++|.+|+ ||+.|.. +. . ..+...++.++|+.+||. +..+. +++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 5888999 9988753 21 1 112235688999999995 45554 3445664
No 145
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.15 E-value=4e-12 Score=127.80 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=66.3
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC---cC-cEEEEcCCCCCCC----CCCHH
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL---NGHKTKLS---FG-TAAYVTQDDNLIG----TLTVR 146 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~---~G~~~~~~---~~-~i~yv~Q~~~l~~----~lTV~ 146 (497)
++.+|++++|+||||+|||||+|+|+|...+. +|+|.+ +|+..... .+ ..+|++|.+.+.+ .+|+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 45689999999999999999999999998875 899998 77654221 11 1699999987765 6899
Q ss_pred HHHH--HHh------hccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 010938 147 ETIS--YSA------RLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRR 202 (497)
Q Consensus 147 e~l~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 202 (497)
|++. |.. .|+........+....+.++++.++|.+...... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 321 1221111111222345888999999976433222 2477777763
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.13 E-value=1.9e-13 Score=139.03 Aligned_cols=166 Identities=20% Similarity=0.167 Sum_probs=104.1
Q ss_pred ccceeeceEEEEeCC-------eEEEEECCCCChHHHHHHHHHcCCCCC-CCceeEEEECCEeCC-----CCcCcEEEEc
Q 010938 68 THNVLEGLTGYAEPG-------TLTALMGPSGSGKSTLLDALSSRLASN-AFLSGTILLNGHKTK-----LSFGTAAYVT 134 (497)
Q Consensus 68 ~~~iL~~vs~~i~~G-------e~~~IlG~nGaGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~-----~~~~~i~yv~ 134 (497)
...+++++++.+++| +.++|+||||+|||||+++|+|.+... ...+|.+..++.+.. .....+.|++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 356889999999877 899999999999999999999987321 013676666554321 1235689999
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCC
Q 010938 135 QDDNLIGTLTVRETISYSARLRLPDK-MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRP 213 (497)
Q Consensus 135 Q~~~l~~~lTV~e~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p 213 (497)
|.+.+.+ ++.|++..........- .......+.+...+..++|.. +.+. +..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9887765 78888855433211000 001111233444455555543 3443 347999999998665
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCChHHHhcCC
Q 010938 214 RLLFLDEPTSGLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 214 ~lllLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~~i~~~~D 263 (497)
.+||+.+..++.++|++.++ .| +.|++ +.+..+++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~ 210 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAK 210 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHH
Confidence 78888899999999998865 34 24663 34444444
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.10 E-value=2.9e-14 Score=141.29 Aligned_cols=140 Identities=18% Similarity=0.170 Sum_probs=94.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCcEEEEcCCC-CCCCC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDD-NLIGT 142 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~-~l~~~ 142 (497)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 56899999999999 999999999999999999998754 7899998754211 13466777764 45566
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 010938 143 LTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT 222 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPT 222 (497)
+++.|++......+ . . .... .+....++ .+..|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r---~--~----~~~~------~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR---S--D----RETG------ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc---C--C----Ccch------HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 66666665432111 0 0 0000 11122222 33469999999999999999999985 8886
Q ss_pred C------------CCCHHHHHHHHHHH
Q 010938 223 S------------GLDSAAAFFVTQTL 237 (497)
Q Consensus 223 s------------gLD~~~~~~i~~~L 237 (497)
. -.|...+.+|++.+
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4 23666666666543
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.08 E-value=1.3e-14 Score=136.65 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=42.6
Q ss_pred HHH-HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEEeeC
Q 010938 205 IAL-EILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYLLSG 270 (497)
Q Consensus 205 IA~-aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~L~~ 270 (497)
.++ +++.+|++++|||+|+++|..+...|.+.|..+.++ +...|.+ ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 445 677788888889999999999999999988887653 2334521 56899988753
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.05 E-value=7.5e-10 Score=106.05 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHHH--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEeCCCChH-------HHhcCCeEEEeeC
Q 010938 204 SIALEIL--MRPRLLFLDEPTSGL--DSAAAFFVTQTLRCLS-RDGRTVIASIHQPSSE-------VFELFDRLYLLSG 270 (497)
Q Consensus 204 ~IA~aL~--~~p~lllLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvI~~tH~~~~~-------i~~~~D~v~~L~~ 270 (497)
..++.++ .+|+++++|+|++.+ |+.....++..|.+++ +.|.|||+++|..... +.+.+|.|+.|+.
T Consensus 118 ~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 118 EVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 3334444 589999999999988 6655566666666654 5689999999985421 4678999999964
No 150
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.02 E-value=1.4e-12 Score=131.30 Aligned_cols=94 Identities=14% Similarity=0.223 Sum_probs=76.2
Q ss_pred EEEEeEEEEEEccCCcccceeeceEEEE-------------------eCCeEEEEECCCCChHHHHHHHHHcCCC--CCC
Q 010938 52 LTWKDLTVMVTLSNGETHNVLEGLTGYA-------------------EPGTLTALMGPSGSGKSTLLDALSSRLA--SNA 110 (497)
Q Consensus 52 l~~~~ls~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~~IlG~nGaGKSTLL~~L~G~~~--~~~ 110 (497)
|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|++. |.
T Consensus 38 i~~~~v~~~y-------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~- 109 (308)
T 1sq5_A 38 LSLEEVAEIY-------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE- 109 (308)
T ss_dssp CCHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-
T ss_pred cchHhHHHHH-------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-
Confidence 7778888877 35889999988 8999999999999999999999999887 65
Q ss_pred CceeEEEE---CCEeCCC-CcCcEEEEcCCCCCCCCCCHHHHHHHHhhcc
Q 010938 111 FLSGTILL---NGHKTKL-SFGTAAYVTQDDNLIGTLTVRETISYSARLR 156 (497)
Q Consensus 111 ~~~G~I~~---~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~ 156 (497)
+|+|.+ +|..... ..+.++++ |...+++.+|+.+++.+...++
T Consensus 110 --~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 110 --HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp --CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred --CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 899999 8865321 12346778 8777888899999998876553
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.01 E-value=9.7e-11 Score=117.77 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=79.3
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhh
Q 010938 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSAR 154 (497)
Q Consensus 75 vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~ 154 (497)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. + . ...+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~---r-~-------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF---R-A-------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT---C-H-------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc---c-H-------------HHHH-------
Confidence 45556789999999999999999999999998763 567776654321 0 0 0011
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 010938 155 LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRV---SIALEILMRPRLLFLDEPTSGLDSAAAF 231 (497)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv---~IA~aL~~~p~lllLDEPTsgLD~~~~~ 231 (497)
....+++.+++.. ....|||+.+++ +|++++..+|+++|+|||.. .....
T Consensus 150 --------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 150 --------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp --------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred --------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 1233445566642 124689999999 99999999999999999974 33445
Q ss_pred HHHHHHHHHH
Q 010938 232 FVTQTLRCLS 241 (497)
Q Consensus 232 ~i~~~L~~l~ 241 (497)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665553
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.97 E-value=4.7e-10 Score=112.24 Aligned_cols=141 Identities=13% Similarity=0.183 Sum_probs=90.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPD 159 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~ 159 (497)
++|++++|+||||+||||++..|++.+.+. +| +++.++.++.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 479999999999999999999999987652 34 34677777652 3355565554321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010938 160 KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (497)
Q Consensus 160 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~ 239 (497)
..|+.... ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 159 ----------------~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 12332110 1122 23345555 45999999999 999998766555444433
Q ss_pred HH---hCCCEEEE-EeCCCChHHHhcCCeEEEeeCCeEEEE
Q 010938 240 LS---RDGRTVIA-SIHQPSSEVFELFDRLYLLSGGKTVYF 276 (497)
Q Consensus 240 l~---~~g~tvI~-~tH~~~~~i~~~~D~v~~L~~G~iv~~ 276 (497)
+. ..+.++|+ ++|.. .++.+.++++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 12334444 47874 578888888776777777764
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.96 E-value=1.7e-10 Score=122.44 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=47.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 123 (497)
..+|+|+||++++ ++++|+|||||||||||++|+|+++|+ +|+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 4689999999999 999999999999999999999999986 89999999764
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.96 E-value=1.3e-09 Score=115.28 Aligned_cols=174 Identities=14% Similarity=0.141 Sum_probs=110.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
...|+++.+-+++|+++.|.|+||+|||||+..|++...+. .| ..+.|+.-+ ++..+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l 247 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQL 247 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHH
Confidence 45788998889999999999999999999999998754331 12 123333322 222221
Q ss_pred HHH--Hhh-------ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHH--hCCCEEE
Q 010938 149 ISY--SAR-------LRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLF 217 (497)
Q Consensus 149 l~~--~~~-------~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~--~~p~lll 217 (497)
..- +.. ++. ..+...+ ..++.+.+..++..+.. +- ...++|++|.+ +.++.++ .+|++++
T Consensus 248 ~~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~--d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 248 VMRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIY---ID--DTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEE---EE--CCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEE---EE--CCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 111 000 010 1122222 23455555555443322 11 12368999987 5667776 6899999
Q ss_pred EeCCCCCCCH--------HHHHHHHHHHHHHHh-CCCEEEEEeC---------C--CC-------hHHHhcCCeEEEeeC
Q 010938 218 LDEPTSGLDS--------AAAFFVTQTLRCLSR-DGRTVIASIH---------Q--PS-------SEVFELFDRLYLLSG 270 (497)
Q Consensus 218 LDEPTsgLD~--------~~~~~i~~~L~~l~~-~g~tvI~~tH---------~--~~-------~~i~~~~D~v~~L~~ 270 (497)
+|+++...++ .....+.+.|+.+++ .|.+||+++| + |. ..+...||.|++|..
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 9999987742 334677788888876 4899999999 2 32 147788999999986
Q ss_pred CeE
Q 010938 271 GKT 273 (497)
Q Consensus 271 G~i 273 (497)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 653
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.95 E-value=1.3e-09 Score=108.91 Aligned_cols=118 Identities=20% Similarity=0.102 Sum_probs=82.7
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHH
Q 010938 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYS 152 (497)
Q Consensus 73 ~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~ 152 (497)
++++++ +|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+.... + ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~----~------------~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP----A------------AR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH----H------------HH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH----h------------HH-HHH---
Confidence 678887 99999999999999999999999998763 57777766543110 0 00 000
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHH
Q 010938 153 ARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP-TSGLDSAAAF 231 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEP-TsgLD~~~~~ 231 (497)
..+.+..++...... ...+-.+.+|.+|+.+...+++++|+||| +.++|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 012233455432110 01234456789999988899999999999 9999998888
Q ss_pred HHHHHHHHH
Q 010938 232 FVTQTLRCL 240 (497)
Q Consensus 232 ~i~~~L~~l 240 (497)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 887777665
No 156
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.91 E-value=4.4e-11 Score=127.81 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=98.3
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCC--CHHHHH
Q 010938 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSS--RLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTL--TVRETI 149 (497)
Q Consensus 74 ~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G--~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~l--TV~e~l 149 (497)
.+++.+.++.-++|.|++||||||+|+.|.. +.... .|++.+.+.+.+.. . ++....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~-e-----l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKML-E-----LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSS-G-----GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchh-h-----hhhhccCCcccceeecCH
Confidence 4678888999999999999999999999875 33332 46666666553311 0 0100111111 122222
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc--ccccCccCCCCCHHHHHHH----------HHHHHHHhCCC-EE
Q 010938 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCAD--TVIGNWHLRGISGGERRRV----------SIALEILMRPR-LL 216 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~vg~~~~~~LSGGerqRv----------~IA~aL~~~p~-ll 216 (497)
..+...- .....+.++| .+++...|+.+..+ ..+. ..+||||+||. .+|+++...|. ++
T Consensus 230 ~~a~~~L---~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 230 KDAANAL---RWCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHH---HHHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHH---HHHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 2211110 0112344455 36788888875432 1121 24788887752 35566677897 78
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCCC
Q 010938 217 FLDEPTSGLDSAAAFFVTQTLRCLSR----DGRTVIASIHQPS 255 (497)
Q Consensus 217 lLDEPTsgLD~~~~~~i~~~L~~l~~----~g~tvI~~tH~~~ 255 (497)
++||++.-+|.. ...+.+.|.++++ .|.++|++||+|.
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999988843 3456666666543 2789999999986
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.89 E-value=2.4e-11 Score=133.11 Aligned_cols=160 Identities=15% Similarity=0.107 Sum_probs=100.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCC----------
Q 010938 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDD---------- 137 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~---------- 137 (497)
...+++++++.+.+|+.++|+||||+|||||+++|++.+++. .-|.+.+++.+.......++|+|+..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 466899999999999999999999999999999999998774 24888888876544445688888743
Q ss_pred ------------CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 010938 138 ------------NLIGTLTVRETISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSI 205 (497)
Q Consensus 138 ------------~l~~~lTV~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 205 (497)
..+..+++.+|+........+...-. +...... +.+|.-+.... ...++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~---~L~G~~~~~~~-----~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAG---ALLGDVRHDPF-----QSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHH---HHHCEECCCCC---------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHH---hcCceEEechh-----hcCCccccccccccC
Confidence 11112222222211000000000000 0000011 11221111111 114699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010938 206 ALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRC 239 (497)
Q Consensus 206 A~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~ 239 (497)
++....++.+||+||... |++.....+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899988888888864
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.89 E-value=1.3e-09 Score=111.51 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=91.0
Q ss_pred eeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010938 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 71 iL~~vs--~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
-|+.+- +-+++|+++.|.||||+|||||+..++...... . ..+.|+.-+..+-+ .
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g--------------~~vlyi~~E~~~~~---~--- 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---G--------------GIAAFIDAEHALDP---E--- 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---T--------------CCEEEEESSCCCCH---H---
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---C--------------CeEEEEECCCCcCH---H---
Confidence 454443 368999999999999999999988777433211 1 23455554432111 0
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCCCC-
Q 010938 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMR--PRLLFLDEPTSGL- 225 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~--p~lllLDEPTsgL- 225 (497)
++ +.+|+... +-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 105 --~a----------------------~~lG~~~~-~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 105 --YA----------------------KKLGVDTD-SLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp --HH----------------------HHTTCCGG-GCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred --HH----------------------HHcCCCHH-HeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 11 11222110 00111 11233 2346678888765 9999999999998
Q ss_pred ---------CH---HHHHHHHHHHHHH----HhCCCEEEEEeCCCCh---------------HHHhcCCeEEEeeCCeEE
Q 010938 226 ---------DS---AAAFFVTQTLRCL----SRDGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKTV 274 (497)
Q Consensus 226 ---------D~---~~~~~i~~~L~~l----~~~g~tvI~~tH~~~~---------------~i~~~~D~v~~L~~G~iv 274 (497)
|+ ..+..+.+.+++| .+.|.|||+++|.... .+..+||.++.++.++++
T Consensus 154 ~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 154 RAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 33 2223445555555 3458999999996421 256789999999877665
Q ss_pred EEeC
Q 010938 275 YFGE 278 (497)
Q Consensus 275 ~~G~ 278 (497)
..|+
T Consensus 234 k~g~ 237 (349)
T 2zr9_A 234 KDGT 237 (349)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 4443
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.83 E-value=1.3e-12 Score=129.15 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=82.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCcEEEEcCCCC-CCCC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDN-LIGT 142 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~-l~~~ 142 (497)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ..+.+++++|... ..|.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 46899999999999 99999999999999999999864 5889998865311 1134567777643 5667
Q ss_pred CCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCE
Q 010938 143 LTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~l 215 (497)
+++.|++......+... .....+....+.+++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 77888875432211000 000112222233322 24899999999999999999875
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.82 E-value=1.7e-10 Score=107.77 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=44.9
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----CCcCcEEEEcCCCCCCCCCCHHHH
Q 010938 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTK-----LSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 76 s~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~-----~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
|+++.+|++++|+||||||||||+++|+|+.+ .+.+++.... .....++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56788999999999999999999999999863 2555554321 112457899998766555555444
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.82 E-value=6.5e-10 Score=103.12 Aligned_cols=38 Identities=26% Similarity=0.167 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010938 201 RRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCL 240 (497)
Q Consensus 201 qRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l 240 (497)
+.+.+|++|+.+|+++++| ||++|.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999988653
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.80 E-value=2e-12 Score=125.69 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=81.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CcCcEEEEcCCCC-CCCC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL-----SFGTAAYVTQDDN-LIGT 142 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~-l~~~ 142 (497)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... ..+.+++++|... ..+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 46899999999999 99999999999999999999864 5889998865211 1123566777643 4566
Q ss_pred CCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCE
Q 010938 143 LTVRETISYSARLRLPD-KMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRL 215 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~l 215 (497)
+++.|++......+... .....+....+.+++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 77777774332211000 001112222233332 24899999999999999999976
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.67 E-value=6.9e-10 Score=106.81 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=41.7
Q ss_pred eEEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010938 50 ARLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (497)
Q Consensus 50 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 123 (497)
..|+++|++..+. . ++++.+ ++++|+|||||||||||++|+|++.|. +|+|.++|.+.
T Consensus 8 ~~l~l~~~~~~~~------~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~ 65 (227)
T 1qhl_A 8 RSLTLINWNGFFA------R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEEETTEEE------E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC-------
T ss_pred eEEEEEeeecccC------C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEc
Confidence 4578888766541 1 455666 899999999999999999999999886 89999999764
No 164
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.62 E-value=3.6e-09 Score=108.86 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=87.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHH---HHHHH
Q 010938 84 LTALMGPSGSGKSTLLDALSSRLASN--------AFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE---TISYS 152 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~~~~--------~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e---~l~~~ 152 (497)
.++|+|++|||||||+|.|+|..... ...+|.|.++|.+... ....|++.+.+. ..|.. .+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~tl~~~ 255 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVTLSEA 255 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHHHHHH
Confidence 39999999999999999999976421 0247999999865321 122344444221 11211 11111
Q ss_pred hh--c--c-CCCCCCH---HHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH----HHH-HhCCCEEEEe
Q 010938 153 AR--L--R-LPDKMPW---SEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIA----LEI-LMRPRLLFLD 219 (497)
Q Consensus 153 ~~--~--~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA----~aL-~~~p~lllLD 219 (497)
.. . . .+..... .+....+.++++.+++.+..--.|++ +...+|+|+++|+.++ +++ ..+|++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~---- 330 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV---- 330 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence 00 0 0 0001111 22233456778888876543222333 3445788899988887 454 334444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh
Q 010938 220 EPTSGLDSAAAFFVTQTLRCLSR 242 (497)
Q Consensus 220 EPTsgLD~~~~~~i~~~L~~l~~ 242 (497)
+|+|++|......+.+.|.++..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988654
No 165
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.60 E-value=7.9e-09 Score=98.85 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=23.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHH-cCCCC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS-SRLAS 108 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~-G~~~~ 108 (497)
.+..+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 98743
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.58 E-value=1.3e-08 Score=104.29 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=31.1
Q ss_pred eeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 71 iL~~vs--~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
-|+.+- +=+++|+++.|.||||||||||+..+++...+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 455543 36899999999999999999999999976543
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.53 E-value=2.5e-08 Score=92.62 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010938 203 VSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLS 241 (497)
Q Consensus 203 v~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~ 241 (497)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887643
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.52 E-value=1.1e-07 Score=101.13 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCC
Q 010938 197 GGERRRVSIALEILMRPRLLFLDEP----------TSGLDSAAAFFVTQTLRCLS----RDGRTVIASIHQP 254 (497)
Q Consensus 197 GGerqRv~IA~aL~~~p~lllLDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~tvI~~tH~~ 254 (497)
|++++|..+++|....|.+||+||+ +.|.|......+.++|..+- ..+..||.+||+|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6778888899999999999999999 44777777777777777663 2467899999996
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.45 E-value=4.3e-09 Score=98.53 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=32.0
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010938 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKT 123 (497)
Q Consensus 72 L~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~ 123 (497)
..+..+..++|++++|+||||||||||+++|++.+ |.+.++|.+.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 33334667899999999999999999999999864 7788888653
No 170
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.40 E-value=2.4e-07 Score=104.12 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-eCCCChHHHhcCCeE
Q 010938 193 RGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIAS-IHQPSSEVFELFDRL 265 (497)
Q Consensus 193 ~~LSGGerqRv~IA~aL~~~p~lllLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~-tH~~~~~i~~~~D~v 265 (497)
.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++ ..+.+++++.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~ 262 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDA 262 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSC
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCC
Confidence 3579999999999999999999999999996 999888777777776655556777775 8875 5677777743
No 171
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.38 E-value=1.6e-07 Score=95.50 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=85.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
..-|+.+.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeC------CCCHHHH
Confidence 4457777777999999999999999999999888743211 11 23445432 2343332
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010938 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
. .+.......+.+.+..+ ..||.++.+|+..|...+.++++++.|+|...+
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si--- 140 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI--- 140 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH---
T ss_pred H------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH---
Confidence 2 22222222222222111 259999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHh-C-CCEEEEEeC
Q 010938 229 AAFFVTQTLRCLSR-D-GRTVIASIH 252 (497)
Q Consensus 229 ~~~~i~~~L~~l~~-~-g~tvI~~tH 252 (497)
.++...++++.+ . |..+|++-|
T Consensus 141 --~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 --EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEec
Confidence 366667777765 4 677777754
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.37 E-value=2.5e-08 Score=97.30 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=36.5
Q ss_pred EEEEEeE-EEEEEccCCcccceeeceEEEEeC---CeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 51 RLTWKDL-TVMVTLSNGETHNVLEGLTGYAEP---GTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 51 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~i~~---Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
.|+++|+ ++.|. +.+.+|+|+|+++++ |++++|+|++||||||+.++|++.+.
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999 99882 246799999999999 99999999999999999999998653
No 173
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.31 E-value=5.1e-07 Score=92.25 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--CCCC
Q 010938 193 RGISGGERRRVSIALEILMRPRLLFLD-EPTSGLDSAAAFFVTQTLRCLSRDGRTVIASI--HQPS 255 (497)
Q Consensus 193 ~~LSGGerqRv~IA~aL~~~p~lllLD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~t--H~~~ 255 (497)
..+|+||+|++. +.+...++-++++| +|++|+|......+++.+..+.. +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 458999998876 55556777889999 99999999998888888777644 67888888 7753
No 174
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.29 E-value=4.8e-07 Score=82.75 Aligned_cols=39 Identities=31% Similarity=0.358 Sum_probs=34.7
Q ss_pred cee--eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC
Q 010938 70 NVL--EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (497)
Q Consensus 70 ~iL--~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~ 109 (497)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 356 7899999999 99999999999999999999987653
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.25 E-value=3.7e-08 Score=92.07 Aligned_cols=52 Identities=31% Similarity=0.420 Sum_probs=42.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEE--EECCEeC
Q 010938 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTI--LLNGHKT 123 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I--~~~G~~~ 123 (497)
..+..+..++..++|++++|+||||||||||+++|++.+.. .|.+ +++|.+.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 34566777888899999999999999999999999998753 5766 8887653
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.23 E-value=1.7e-07 Score=94.72 Aligned_cols=76 Identities=18% Similarity=0.109 Sum_probs=55.5
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C-----cCcEEEE-cCC
Q 010938 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKL---------S-----FGTAAYV-TQD 136 (497)
Q Consensus 72 L~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~---------~-----~~~i~yv-~Q~ 136 (497)
++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+... . ...+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 46899999999999999999999999999999988764 6889887765321 0 3457888 665
Q ss_pred CCCCCCCCHHHHHH
Q 010938 137 DNLIGTLTVRETIS 150 (497)
Q Consensus 137 ~~l~~~lTV~e~l~ 150 (497)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444334444443
No 177
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.21 E-value=2.7e-07 Score=85.28 Aligned_cols=27 Identities=41% Similarity=0.610 Sum_probs=25.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999864
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.20 E-value=5.7e-09 Score=111.52 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=83.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCcEEEEcCCCC-CCCC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDN-LIGT 142 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~ 142 (497)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... .+.+.+++|... ..|.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 45788999999999 99999999999999999999764 57888888653211 123455666643 3455
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCC
Q 010938 143 LTVRETISYSARLRLP-DKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEP 221 (497)
Q Consensus 143 lTV~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEP 221 (497)
+.+.|++......+.. ......+..+.+.+++. .||||++|+..|+++...+|++ |||+
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 5555555332111100 00112223333444442 3788888898899999999987 8888
Q ss_pred CC
Q 010938 222 TS 223 (497)
Q Consensus 222 Ts 223 (497)
..
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 65
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.19 E-value=3.6e-06 Score=85.97 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEeC
Q 010938 195 ISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDG-RTVIASIH 252 (497)
Q Consensus 195 LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvI~~tH 252 (497)
.++.++++..+++..+.+|+++++.-..+..|..+ ...+++++.+...| .++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999887774334445433 44566666665555 46666665
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.18 E-value=9.4e-07 Score=82.09 Aligned_cols=32 Identities=34% Similarity=0.441 Sum_probs=27.5
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 77 ~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
+++.+|++++|+||||||||||+++|++.+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36789999999999999999999999999855
No 181
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=7.4e-07 Score=83.08 Aligned_cols=40 Identities=28% Similarity=0.202 Sum_probs=24.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 67 ETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 67 ~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+...+++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3466899999999999999999999999999999999765
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.16 E-value=1.1e-06 Score=82.17 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCChH-HHhcCCeEEEee
Q 010938 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPSSE-VFELFDRLYLLS 269 (497)
Q Consensus 196 SGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~-i~~~~D~v~~L~ 269 (497)
+.|+.+|..++.....+|+.+.++ ++.++|.....+.+.+... .+.++|+.+|..... ....||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678899999998888887654332 3345565555555444332 356888888875321 256788888774
No 183
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.14 E-value=6e-06 Score=83.97 Aligned_cols=43 Identities=9% Similarity=-0.090 Sum_probs=35.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCC
Q 010938 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR---DGRTVIASIHQP 254 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvI~~tH~~ 254 (497)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888877665 578999999986
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.06 E-value=1.6e-06 Score=79.65 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~ 118 (497)
+|++++|+||||||||||+++|++..++. ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 68999999999999999999999987532 3565544
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.04 E-value=2e-06 Score=90.43 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=50.0
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEeCCCChHHHhcCCeEEE-eeCCeEEEEeCch
Q 010938 211 MRPRLLFLDEPTSGLDS-AAAFFVTQTLRCLSRDGRTVIASIHQPSSEVFELFDRLYL-LSGGKTVYFGETS 280 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvI~~tH~~~~~i~~~~D~v~~-L~~G~iv~~G~~~ 280 (497)
.+|++||+||+..-.+. .++..+...+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887664 6788899999988888899999999965433223333332 4456666666554
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.01 E-value=4e-05 Score=75.42 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEeCCC---ChHH
Q 010938 196 SGGERRRVSIALEILMRPRLLFLDEPTSGLDSA----------AAFFVTQTLRCLSR----DGRTVIASIHQP---SSEV 258 (497)
Q Consensus 196 SGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~----------~~~~i~~~L~~l~~----~g~tvI~~tH~~---~~~i 258 (497)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..+.. .+..||.+|++| ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998776532 22234444443321 235677788864 2344
Q ss_pred HhcCCeEEEe
Q 010938 259 FELFDRLYLL 268 (497)
Q Consensus 259 ~~~~D~v~~L 268 (497)
.+.|++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 5556665544
No 187
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.00 E-value=5.3e-06 Score=83.30 Aligned_cols=133 Identities=11% Similarity=0.131 Sum_probs=84.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
..-|+++.+-+.+|+++.|.|++|+|||||+.-++..... .| ..+.|+.-+ ++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g-------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND-------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CEEEEEESS------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC-------------CeEEEEECC------CCHHHH
Confidence 4467888777999999999999999999998887742211 11 234555432 344332
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010938 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
.. +.......+.+.+..+ | . ..||.++++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 22 1111111112111111 0 0 12899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHhC-CCE--EEEEeCC
Q 010938 229 AAFFVTQTLRCLSRD-GRT--VIASIHQ 253 (497)
Q Consensus 229 ~~~~i~~~L~~l~~~-g~t--vI~~tH~ 253 (497)
..++...++++.++ |.. +|++-|-
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 34566667777653 666 7777654
No 188
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.99 E-value=5.6e-07 Score=87.48 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=43.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeCCC------CcCcEEEE
Q 010938 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALS---SRLASNAFLSGTIL--------LNGHKTKL------SFGTAAYV 133 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~---G~~~~~~~~~G~I~--------~~G~~~~~------~~~~i~yv 133 (497)
++++.+ ++|++++|+|||||||||++++|+ |+..++ +|.|+ .+|.+... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887664 89988 78875421 12346777
Q ss_pred cCC
Q 010938 134 TQD 136 (497)
Q Consensus 134 ~Q~ 136 (497)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.98 E-value=1.5e-06 Score=83.03 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=33.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
..++|++++|.|+||||||||+++|+|. .|+|.+.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 4478999999999999999999999987 3778887765
No 190
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.93 E-value=4.5e-06 Score=78.43 Aligned_cols=29 Identities=41% Similarity=0.593 Sum_probs=27.1
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998865
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.93 E-value=5.8e-05 Score=76.64 Aligned_cols=139 Identities=13% Similarity=0.133 Sum_probs=78.1
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhc
Q 010938 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARL 155 (497)
Q Consensus 77 ~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~-~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~ 155 (497)
+-+++|+++.|.||+|+|||||+..++... .+. ..| | ....+.|+.-+..+ ....-......+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~--~~g-----g-----~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG--AGG-----Y-----PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB--TTT-----B-----CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc--ccC-----C-----CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 468999999999999999999999888642 121 000 1 01345566554322 222222222222
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHH-HHHHHHHHHHH----hCCCEEEEeCCCCCCCHH--
Q 010938 156 RLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGE-RRRVSIALEIL----MRPRLLFLDEPTSGLDSA-- 228 (497)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~IA~aL~----~~p~lllLDEPTsgLD~~-- 228 (497)
. ... +++++.+.+. +..++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 181 g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 N----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp T----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred C----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1 111 1223222110 1123333 34555666666 568999999999866432
Q ss_pred ----------HHHHHHHHHHHHHh-CCCEEEEEeCCC
Q 010938 229 ----------AAFFVTQTLRCLSR-DGRTVIASIHQP 254 (497)
Q Consensus 229 ----------~~~~i~~~L~~l~~-~g~tvI~~tH~~ 254 (497)
...+++..|+.+++ .|.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 12455566666665 488999888863
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.91 E-value=5.8e-05 Score=75.90 Aligned_cols=143 Identities=24% Similarity=0.275 Sum_probs=80.0
Q ss_pred eeceE-EEEeCCeEEEEECCCCChHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHH
Q 010938 72 LEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSSRL-ASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETI 149 (497)
Q Consensus 72 L~~vs-~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~-~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l 149 (497)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+. ..| |. ...+.|+.-+..+ ....-.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHH
Confidence 44432 568999999999999999999998887532 221 001 10 1245566544322 122222
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHH-HHHHHHHHHHHH---hCCCEEEEeCCCCCC
Q 010938 150 SYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGG-ERRRVSIALEIL---MRPRLLFLDEPTSGL 225 (497)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG-erqRv~IA~aL~---~~p~lllLDEPTsgL 225 (497)
.....+. ... +++++.+- +. +..++. +.+.+..++.++ .+|+++++|+.++-.
T Consensus 160 ~~~~~~g----~~~-------~~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 160 NMAKALG----LDI-------DNVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HHHHHTT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred HHHHHhC----CCH-------HHHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 2222211 111 11222111 11 123333 335677778888 579999999999865
Q ss_pred CH--------HH----HHHHHHHHHHHHh-CCCEEEEEeCC
Q 010938 226 DS--------AA----AFFVTQTLRCLSR-DGRTVIASIHQ 253 (497)
Q Consensus 226 D~--------~~----~~~i~~~L~~l~~-~g~tvI~~tH~ 253 (497)
+. .. ..+++..|+.+++ .|.+||++.|-
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 32 11 2445556666655 48899998775
No 193
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.89 E-value=1.3e-05 Score=79.87 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEeCCCChHHHhcCCeEE
Q 010938 195 ISGGERRRVSIALEIL--MRPRLLFLDEPTSGLDSAA-AFFVTQTLRCLSRD-GR--TVIASIHQPSSEVFELFDRLY 266 (497)
Q Consensus 195 LSGGerqRv~IA~aL~--~~p~lllLDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--tvI~~tH~~~~~i~~~~D~v~ 266 (497)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++++. |. .+.+++|+. ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 898886 5566666 68999998 7899876 66777888888763 43 566667763 44556665543
No 194
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.84 E-value=2.2e-06 Score=88.39 Aligned_cols=44 Identities=27% Similarity=0.248 Sum_probs=39.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~ 118 (497)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 566655
No 195
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.84 E-value=2.5e-06 Score=79.68 Aligned_cols=41 Identities=24% Similarity=0.244 Sum_probs=33.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
.++|++++|+|+||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5689999999999999999999999987653 5777665543
No 196
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.82 E-value=6e-06 Score=91.32 Aligned_cols=129 Identities=19% Similarity=0.124 Sum_probs=71.6
Q ss_pred EEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----cCcEEEEcCCCCCCCCCCHHHHHH
Q 010938 76 TGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLS-----FGTAAYVTQDDNLIGTLTVRETIS 150 (497)
Q Consensus 76 s~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~e~l~ 150 (497)
|+.+++|..++|+|++|+|||||++.|++...+. ...|+| .+|...... .+.+++.+|...++.. ++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~---- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR---- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE----
Confidence 4567889999999999999999999999765431 125766 455432110 1223333333222111 000
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 010938 151 YSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSAAA 230 (497)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~~~ 230 (497)
+ ...||. |. ..++ .......-..+..++++| |+.|+++.+.
T Consensus 76 --------------------------~---nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~ 116 (665)
T 2dy1_A 76 --------------------------V---FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE 116 (665)
T ss_dssp --------------------------E---EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred --------------------------E---EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH
Confidence 0 011221 10 0111 112222335678899999 9999998776
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Q 010938 231 FFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 231 ~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
. .++.+.+.+.++|++.|..
T Consensus 117 ~----~~~~~~~~~ip~ilv~NKi 136 (665)
T 2dy1_A 117 R----AWTVAERLGLPRMVVVTKL 136 (665)
T ss_dssp H----HHHHHHHTTCCEEEEEECG
T ss_pred H----HHHHHHHccCCEEEEecCC
Confidence 3 3333344688889999884
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.79 E-value=1.1e-05 Score=75.36 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
++++|++++|+|+||||||||.+.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999999999865
No 198
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.78 E-value=6.3e-06 Score=74.70 Aligned_cols=35 Identities=34% Similarity=0.559 Sum_probs=29.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
.+|++++|+|+||||||||+++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999763 55666654
No 199
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.77 E-value=6.5e-06 Score=77.23 Aligned_cols=29 Identities=31% Similarity=0.403 Sum_probs=26.2
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998764
No 200
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.77 E-value=4.7e-05 Score=79.74 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=69.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCCCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDK 160 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~~~ 160 (497)
++.+++++|++|+||||++..|++.+... .++|.+ +.-+. + .....+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll--------------v~~D~--~-r~~a~eqL~---------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL--------------VAADV--Y-RPAAYDQLL---------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE--------------EEECC--S-CHHHHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE--------------EecCc--c-chhHHHHHH----------
Confidence 57899999999999999999999877552 344433 32221 0 001122222
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 010938 161 MPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPT-SG--LDSAAAFFVTQTL 237 (497)
Q Consensus 161 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPT-sg--LD~~~~~~i~~~L 237 (497)
.+-+..|+.-.... .+..--.--+-+++.+...+++++|+|+|. .+ .|+....++.+++
T Consensus 146 -----------~~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 146 -----------QLGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp -----------HHHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred -----------HHHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 12222343211100 011111222334555555689999999997 35 7887777777766
Q ss_pred HHHHhCCCEEEEEeCC
Q 010938 238 RCLSRDGRTVIASIHQ 253 (497)
Q Consensus 238 ~~l~~~g~tvI~~tH~ 253 (497)
+.+......+++..|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 5554344455555554
No 201
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.75 E-value=2.3e-06 Score=86.28 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=35.3
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCChHHHHHHHHHcCCCC
Q 010938 68 THNVLEGLTGYAEPGT------LTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge------~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.+..|++++..+..++ ++||+||||||||||+++|++++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4567888888887776 9999999999999999999998763
No 202
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.72 E-value=6.2e-06 Score=89.08 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=35.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG-TIL-LNGHK 122 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G-~I~-~~G~~ 122 (497)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47799999999999999999999999998774 54 674 77754
No 203
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.68 E-value=1.4e-05 Score=72.08 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998764
No 204
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.64 E-value=2.7e-05 Score=69.50 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=25.4
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010938 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 73 ~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~ 103 (497)
++.++.+.+| +++|+|||||||||+|++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4556666665 99999999999999999987
No 205
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.61 E-value=1.2e-05 Score=81.24 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999997653
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.59 E-value=8.8e-05 Score=73.63 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=26.0
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999764
No 207
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.55 E-value=2.9e-05 Score=81.10 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=28.9
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCC
Q 010938 77 GYAEPGTLTALMGPSGSGKSTLLDALSSRLASN 109 (497)
Q Consensus 77 ~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~ 109 (497)
+.+.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 456789999999999999999999999988663
No 208
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.54 E-value=2.1e-05 Score=75.15 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=76.9
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHHHHHHhhccCC
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLP 158 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~l~~~~~~~~~ 158 (497)
+..|+.++|.||+||||||++.++....... .| ....+..+.+.+......++.+++.........
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~---~~-----------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQ---ND-----------RAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHH---TT-----------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhh---cC-----------CCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 3579999999999999999888765321000 01 012234555555433333444554332111000
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccc--CccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 010938 159 DKMPWSEKRTLVERTIIEMGLQDCADTVIG--NWHLRGISGGERRRVSIALEILMRPRLLFLDEPTS-GLDSAAAFFVTQ 235 (497)
Q Consensus 159 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg--~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTs-gLD~~~~~~i~~ 235 (497)
. ..|.....+.... +..+-=.+.|...+.. ...+.+-+++++||.-. ++|.......++
T Consensus 139 ~----------------~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 139 K----------------SCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp S----------------SEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c----------------eEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 0010000000000 0000012456655553 33578999999999976 688776655555
Q ss_pred HHHHHHhCCCEEEEEeCCCChHHHhcCC
Q 010938 236 TLRCLSRDGRTVIASIHQPSSEVFELFD 263 (497)
Q Consensus 236 ~L~~l~~~g~tvI~~tH~~~~~i~~~~D 263 (497)
.+.....+-.++++|.--+...+.++++
T Consensus 201 ~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 201 DVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 5544433334666665444444555554
No 209
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.46 E-value=0.0012 Score=62.82 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=29.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCC
Q 010938 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSR--DGRTVIASIHQ 253 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~--~g~tvI~~tH~ 253 (497)
.+|+++|+..+.+.++......+..+++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 47899999999888888665555555444322 12588888884
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.45 E-value=8.3e-06 Score=82.81 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=40.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G 120 (497)
+.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+. .|+|.+-+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 56888999999999999999999999999999999887553 45555443
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.45 E-value=9.9e-05 Score=83.32 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=28.3
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.+++|+.++|+||||+|||||+++|++.+..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999999999998643
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.42 E-value=3e-05 Score=70.51 Aligned_cols=38 Identities=37% Similarity=0.463 Sum_probs=29.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG--TILLNGH 121 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G--~I~~~G~ 121 (497)
.+|++++|+|++||||||+.+.|++.+.+ .| .|.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECCh
Confidence 47899999999999999999999987643 24 5555543
No 213
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.38 E-value=0.00026 Score=70.60 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=35.5
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010938 210 LMRPRLLFLDEPTS-GLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 210 ~~~p~lllLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
..++.+||+||+-. ..+...+..+...+..+...|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999865 23447788889999888777788888887643
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.38 E-value=0.00017 Score=66.63 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998654
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.36 E-value=5.8e-05 Score=72.17 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=27.3
Q ss_pred eeeceEEEEe---CCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 71 VLEGLTGYAE---PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 71 iL~~vs~~i~---~Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3677777776 8999999999999999999999987653
No 216
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.36 E-value=1.6e-05 Score=81.68 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=44.7
Q ss_pred EEEEEeEEEEEEccCCcccceee--------------ceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLE--------------GLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.|+|++..|+ ..+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP----~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHA----NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESC----CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCC----CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 366778887775 3466888 899999999999999999999999999998765
No 217
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.30 E-value=4.8e-05 Score=77.46 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=31.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
+++.+++|+|++|||||||+|.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 457899999999999999999999977653 5666655443
No 218
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.30 E-value=0.00013 Score=68.42 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=25.6
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010938 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 73 ~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G 104 (497)
.+.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 4556666665 999999999999999999863
No 219
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.26 E-value=0.00033 Score=63.11 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
No 220
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.26 E-value=0.0027 Score=64.70 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=28.4
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010938 70 NVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 70 ~iL~~vs--~~i~~Ge~~~IlG~nGaGKSTLL~~L~G 104 (497)
.-|+.+- +=+++|+++.|.|++|+|||||...++.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455543 3588999999999999999999887764
No 221
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.25 E-value=4.1e-05 Score=82.63 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=40.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G 120 (497)
..+++++++.+ +|+.++|+||||+|||||+++|++...+. .|.|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 34677888877 89999999999999999999999988653 67776655
No 222
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.24 E-value=0.00027 Score=74.01 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=31.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 010938 84 LTALMGPSGSGKSTLLDALSSRLAS------N---AFLSGTILLNGHK 122 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~~~------~---~~~~G~I~~~G~~ 122 (497)
.++|+|+||+|||||+|.|+|.... + ....|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999997531 0 1246899999975
No 223
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.19 E-value=0.00092 Score=70.06 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=80.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHHH
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRET 148 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e~ 148 (497)
..-|+.+.+-+++|+++.|.|++|+|||||+.-++...... .| ..+.|+.-+ ++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEESS------SCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEECC------CCHHHH
Confidence 34577777779999999999999999999998887532210 11 124444322 333221
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 010938 149 ISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEILMRPRLLFLDEPTSGLDSA 228 (497)
Q Consensus 149 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~lllLDEPTsgLD~~ 228 (497)
. .+... ...+++.. . +. -..||..+.+|+.-|...+.+.++++.|+|.. +.
T Consensus 245 ~------------------~R~~~--~~~~i~~~--~-l~---~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~- 295 (444)
T 2q6t_A 245 T------------------LRMMC--SEARIDMN--R-VR---LGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL- 295 (444)
T ss_dssp H------------------HHHHH--HHTTCCTT--T-CC---GGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH-
T ss_pred H------------------HHHHH--HHcCCCHH--H-Hh---CCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH-
Confidence 1 11111 12233211 1 10 02499999999999998888889999988743 33
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEeC
Q 010938 229 AAFFVTQTLRCLSR-DGRTVIASIH 252 (497)
Q Consensus 229 ~~~~i~~~L~~l~~-~g~tvI~~tH 252 (497)
.++...++++.+ .|..+|++-+
T Consensus 296 --~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 296 --MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp --HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred --HHHHHHHHHHHHHcCCCEEEEcC
Confidence 345556666654 4677777644
No 224
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.19 E-value=0.00016 Score=67.87 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=27.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEE
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILL 118 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~ 118 (497)
+.+++|+|||||||||+.++|++.+......+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999865321113566654
No 225
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.16 E-value=8.4e-05 Score=69.62 Aligned_cols=40 Identities=35% Similarity=0.406 Sum_probs=33.1
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSG--TILLNGH 121 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G--~I~~~G~ 121 (497)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5689999999999999999999999887642 56 6777653
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.15 E-value=0.0003 Score=64.39 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=20.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999988887 6689999999999999999973
No 227
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.14 E-value=0.00039 Score=71.13 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=27.4
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHH
Q 010938 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 72 L~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~ 103 (497)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888775 99999999999999999986
No 228
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.13 E-value=0.00078 Score=65.56 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++.-+.|.||+|+|||||++.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 566679999999999999999998764
No 229
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.09 E-value=0.00021 Score=66.50 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=25.5
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999998765
No 230
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.09 E-value=0.0019 Score=64.51 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=28.2
Q ss_pred eeeceE-EEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010938 71 VLEGLT-GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 71 iL~~vs-~~i~~Ge~~~IlG~nGaGKSTLL~~L~G 104 (497)
.|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444443 5689999999999999999999988774
No 231
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.09 E-value=0.00043 Score=66.06 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=42.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCChHHHhcCCeEEEee
Q 010938 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH---------~~~~~i~~~~D~v~~L~ 269 (497)
+|+++++||--. |+. .+++.++.+++.|.+||++-| .++..+..++|.|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 664 355666777777999999999 56678889999999985
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.07 E-value=0.00023 Score=65.18 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=26.1
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 74 ~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999864
No 233
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.06 E-value=0.00023 Score=65.25 Aligned_cols=39 Identities=36% Similarity=0.447 Sum_probs=29.1
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
.+++|+|+||||||||++.|.+.+......-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 589999999999999999999875432223466666543
No 234
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.06 E-value=0.00052 Score=64.29 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=30.7
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEeCCC
Q 010938 211 MRPRLLFLDEPTSGL-DSAAAFFVTQTLRCLSRDGRT-VIASIHQP 254 (497)
Q Consensus 211 ~~p~lllLDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vI~~tH~~ 254 (497)
.+|.++++||.-.-- +......+.+.+..+...+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999965422 233377788888887665655 78887764
No 235
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.00 E-value=0.0017 Score=68.25 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=29.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G 104 (497)
..-|+.+.+=+.+|+++.|.|++|+|||||+--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 345666666689999999999999999999877764
No 236
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.99 E-value=0.00014 Score=67.22 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=31.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 68 THNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-..+++++|+..++++ ++|+|++|+|||||++.+.+-
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3468899998888875 689999999999999999863
No 237
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.97 E-value=0.0041 Score=63.08 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999998654
No 238
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.94 E-value=0.00034 Score=64.71 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010938 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G 104 (497)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.88 E-value=0.0002 Score=74.76 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=38.1
Q ss_pred eceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010938 73 EGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 73 ~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
+++++. +|++++++|+|||||||++..|++.+.+. .|.|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999998764 5777776654
No 240
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.88 E-value=8.5e-05 Score=75.99 Aligned_cols=47 Identities=28% Similarity=0.320 Sum_probs=34.6
Q ss_pred EEEEEeEEEEEEccCCcccceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 51 RLTWKDLTVMVTLSNGETHNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 51 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.+.+.|++..+ ..+.+++++++.| +|+|++|+|||||++.|.|....
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 46677776665 3466889999876 99999999999999999886443
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.87 E-value=0.00027 Score=64.53 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=26.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
..+|.++.|+|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999987654
No 242
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.81 E-value=0.013 Score=58.55 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999754
No 243
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.78 E-value=0.00051 Score=70.98 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=32.7
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHcC-----------CCCCCCceeEEEECCE
Q 010938 77 GYAEPGTLTALMGPSGSGKSTLLDALSSR-----------LASNAFLSGTILLNGH 121 (497)
Q Consensus 77 ~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~-----------~~~~~~~~G~I~~~G~ 121 (497)
..+..|..++|+|+||+|||||++.|+|. ..| ..|.+.+.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p---~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDP---NESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CC---SEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCc---eeEEEEECCc
Confidence 34567888999999999999999999997 233 3688887664
No 244
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.76 E-value=0.0007 Score=60.24 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 245
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.75 E-value=0.00093 Score=60.26 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 246
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.75 E-value=0.00032 Score=67.72 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=33.9
Q ss_pred eeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010938 72 LEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHK 122 (497)
Q Consensus 72 L~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~ 122 (497)
+++.+ ..+++.++.|+|+|||||||+.+.|+..+.. |.+.++|..
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 33433 4667889999999999999999999987642 456666643
No 247
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.74 E-value=0.0059 Score=58.19 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..-+.|.||+|+|||||.+.|+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998653
No 248
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.00097 Score=67.22 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998654
No 249
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.71 E-value=0.00077 Score=61.12 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999843
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.71 E-value=0.00063 Score=62.92 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 251
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.69 E-value=0.00017 Score=73.36 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=33.9
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCChHHHHHHHHHcCCC
Q 010938 70 NVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~--~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
.+|+.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478888888999998 99999999999999999998653
No 252
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.00018 Score=72.36 Aligned_cols=41 Identities=24% Similarity=0.552 Sum_probs=36.1
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCChHHHHHHHHHcCCCC
Q 010938 68 THNVLEGLTGYAEPGTL--TALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 68 ~~~iL~~vs~~i~~Ge~--~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 35688888889999999 999999999999999999987644
No 253
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.64 E-value=0.00016 Score=72.00 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=35.3
Q ss_pred ec-eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010938 73 EG-LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGH 121 (497)
Q Consensus 73 ~~-vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~ 121 (497)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 45 677766 9999999999999999999999987653 455655443
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.60 E-value=0.001 Score=59.18 Aligned_cols=23 Identities=43% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 255
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.60 E-value=0.022 Score=60.45 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=28.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010938 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G 104 (497)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34666655689999999999999999999876653
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.57 E-value=0.0012 Score=59.35 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
No 257
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.52 E-value=0.0011 Score=60.04 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 258
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.49 E-value=0.0013 Score=62.59 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.4
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999998743
No 259
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.46 E-value=0.00092 Score=64.23 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=24.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
.++++++...+| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 344555555555 88999999999999999998653
No 260
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.45 E-value=0.0078 Score=60.31 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHH--H--hCCCEEEEeCCCCCCC-----H----------HHHHHHHHHHHHH---H-hCCCEEEEEeCC
Q 010938 197 GGERRRVSIALEI--L--MRPRLLFLDEPTSGLD-----S----------AAAFFVTQTLRCL---S-RDGRTVIASIHQ 253 (497)
Q Consensus 197 GGerqRv~IA~aL--~--~~p~lllLDEPTsgLD-----~----------~~~~~i~~~L~~l---~-~~g~tvI~~tH~ 253 (497)
-+|.+.+.++..+ + .+|++++.|--++=.- . ..++.+-+.|++| + +.|.++|++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3455556666666 3 4799999998776431 1 1233444555553 3 468999999887
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.44 E-value=0.0016 Score=59.02 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 262
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.39 E-value=0.018 Score=58.75 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=27.0
Q ss_pred eeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010938 71 VLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 71 iL~~vs--~~i~~Ge~~~IlG~nGaGKSTLL~~L~G 104 (497)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 344433 3589999999999999999999877653
No 263
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.34 E-value=0.0021 Score=61.34 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=46.5
Q ss_pred HHHHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEeCCC---------------------ChHHHhcCCe
Q 010938 207 LEILMRPRLLFLDEPTSG-LDSAAAFFVTQTLRCLSRDGRTVIASIHQP---------------------SSEVFELFDR 264 (497)
Q Consensus 207 ~aL~~~p~lllLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvI~~tH~~---------------------~~~i~~~~D~ 264 (497)
.++...|+++++||+-.- .+.......++.+..+...|..++.++|-- .+.+++.||.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~ 158 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFD 158 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCe
Confidence 334468999999998642 333222333444444556788999998821 1245566777
Q ss_pred EEEeeCCeEEEEeCchhHHHHHHh
Q 010938 265 LYLLSGGKTVYFGETSAAFEFFAQ 288 (497)
Q Consensus 265 v~~L~~G~iv~~G~~~~~~~~f~~ 288 (497)
|.+++ -+|+++.+.++.
T Consensus 159 v~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 159 LVLID-------LPPRELLERLRD 175 (228)
T ss_dssp EEEBC-------CCHHHHHHHHHT
T ss_pred EEEec-------CCHHHHHHHHHC
Confidence 77654 467777776654
No 264
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.34 E-value=0.0016 Score=59.18 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999754
No 265
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.32 E-value=0.0019 Score=61.98 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998543
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.30 E-value=0.0019 Score=57.14 Aligned_cols=19 Identities=37% Similarity=0.555 Sum_probs=18.3
Q ss_pred EEEEECCCCChHHHHHHHH
Q 010938 84 LTALMGPSGSGKSTLLDAL 102 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L 102 (497)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 267
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.23 E-value=0.0023 Score=59.75 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHc
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G 104 (497)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 268
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.21 E-value=0.0022 Score=59.34 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987543
No 269
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.21 E-value=0.0026 Score=58.35 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.20 E-value=0.0023 Score=61.86 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
No 271
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.18 E-value=0.0025 Score=58.32 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999754
No 272
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.17 E-value=0.0028 Score=58.30 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999876543
No 273
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.17 E-value=0.0027 Score=57.48 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998543
No 274
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.13 E-value=0.0024 Score=57.64 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999843
No 275
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.09 E-value=0.0032 Score=56.38 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q 010938 83 TLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G 104 (497)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 276
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.05 E-value=0.0031 Score=58.20 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998543
No 277
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.03 E-value=0.0016 Score=60.40 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999877643
No 278
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.03 E-value=0.0024 Score=58.15 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
.+++|+|++|||||||+..|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999987654
No 279
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.00 E-value=0.0032 Score=57.29 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++.+++|.|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999854
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.99 E-value=0.057 Score=65.01 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.8
Q ss_pred EEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 78 YAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 78 ~i~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
=+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 4999999999999999999999988754
No 281
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.97 E-value=0.0029 Score=61.48 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999874
No 282
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.97 E-value=0.0032 Score=62.12 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=27.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNG 120 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G 120 (497)
..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3567999999999999999999986542 24455654
No 283
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.97 E-value=0.0036 Score=57.29 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.5
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999864
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.96 E-value=0.0034 Score=56.43 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998653
No 285
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.95 E-value=0.0036 Score=57.87 Aligned_cols=28 Identities=39% Similarity=0.438 Sum_probs=24.0
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998543
No 286
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.92 E-value=0.0043 Score=56.18 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999743
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.89 E-value=0.0037 Score=56.50 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 288
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.0043 Score=56.10 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-.++|+|++|+|||||++.|++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999764
No 289
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.74 E-value=0.005 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999998754
No 290
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.74 E-value=0.0045 Score=54.15 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 291
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.74 E-value=0.0077 Score=60.20 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=31.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
...+|+..+.+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788888887 7899999999999999999999864
No 292
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.73 E-value=0.0041 Score=56.75 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
+.+.+++|.|++||||||+.+.|+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999854
No 293
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.73 E-value=0.011 Score=54.65 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCChHHHhcCCeEEEee
Q 010938 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH---------~~~~~i~~~~D~v~~L~ 269 (497)
+.+++++||--- +|+. +++.++.++..|..||++.+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999543 6643 35677777777999999999 55678889999998875
No 294
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.73 E-value=0.007 Score=61.78 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=28.2
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC-----C--C-CCceeEEEECC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLA-----S--N-AFLSGTILLNG 120 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~-----~--~-~~~~G~I~~~G 120 (497)
|-.++|+|.+|+|||||++.|+|-.. | + .+..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998431 0 0 12357777765
No 295
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.72 E-value=0.047 Score=52.12 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=44.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC---------CChHHHhcCCeEEEee
Q 010938 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQ---------PSSEVFELFDRLYLLS 269 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~---------~~~~i~~~~D~v~~L~ 269 (497)
.+.+++++||----.| +.+.++.+.+.|+.||++-++ ++.++..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877654 666666666789999999999 8888999999999885
No 296
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0052 Score=53.86 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.70 E-value=0.0058 Score=57.14 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998543
No 298
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.70 E-value=0.0054 Score=55.80 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 299
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.70 E-value=0.0042 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
No 300
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.69 E-value=0.011 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999766654
No 301
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.69 E-value=0.084 Score=53.83 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
++.-+.|.||+|+|||+|.++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 46689999999999999999998653
No 302
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.67 E-value=0.0051 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 303
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.63 E-value=0.0054 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 304
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.63 E-value=0.0058 Score=53.67 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 305
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.63 E-value=0.0053 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 306
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.62 E-value=0.0056 Score=56.19 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 307
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.61 E-value=0.0044 Score=55.76 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=18.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.61 E-value=0.005 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 309
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.57 E-value=0.0058 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999864
No 310
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.56 E-value=0.0055 Score=54.28 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 311
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.56 E-value=0.0088 Score=58.46 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.56 E-value=0.0059 Score=53.62 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 313
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.54 E-value=0.0059 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 314
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.54 E-value=0.0063 Score=57.24 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999854
No 315
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.52 E-value=0.0061 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.52 E-value=0.0061 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 317
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.52 E-value=0.0055 Score=53.70 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 318
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.51 E-value=0.0062 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 319
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.50 E-value=0.0078 Score=55.33 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+.+++|.|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
No 320
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.50 E-value=0.076 Score=63.98 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=84.9
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHH
Q 010938 70 NVLEGLT--GYAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 70 ~iL~~vs--~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.-|+.+- +=+++|+++.|.||+|+|||||.--++..... . | ..+.|+.-+...-+ +
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~------G-------~~vlyis~E~s~~~---~-- 426 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----E------G-------KTCAFIDAEHALDP---I-- 426 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----T------T-------CCEEEECTTSCCCH---H--
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----h------C-------CCeEEEEccCchHH---H--
Confidence 4466654 35899999999999999999998776532111 0 1 23556655432211 0
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCC
Q 010938 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGL 225 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~--~~p~lllLDEPTsgL 225 (497)
.+ +.+|++.. +-.+- .+ -++.| -+.+++.++ .+|+++++|..++=.
T Consensus 427 ---~a----------------------~~lGvd~~-~L~i~--~~--~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 427 ---YA----------------------RKLGVDID-NLLCS--QP--DTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---HH----------------------HHTTCCGG-GCEEE--CC--SSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---HH----------------------HHcCCCHH-HeEEc--CC--CCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 01 11222110 00010 01 13333 234555554 579999999998766
Q ss_pred CH-------------HHHHHHHHHHHHH---H-hCCCEEEEEeCCC---------------ChHHHhcCCeEEEeeCCeE
Q 010938 226 DS-------------AAAFFVTQTLRCL---S-RDGRTVIASIHQP---------------SSEVFELFDRLYLLSGGKT 273 (497)
Q Consensus 226 D~-------------~~~~~i~~~L~~l---~-~~g~tvI~~tH~~---------------~~~i~~~~D~v~~L~~G~i 273 (497)
.. .....+.+.+++| + +.|.+||++.|-. ...+..++|-++.+.....
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1223445555555 3 3589999998852 1246678898888765443
No 321
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.49 E-value=0.007 Score=56.20 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 322
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.49 E-value=0.0054 Score=55.29 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 323
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.49 E-value=0.0065 Score=58.28 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
-++|+|++|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999999999998643
No 324
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.47 E-value=0.0087 Score=53.00 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999874
No 325
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.47 E-value=0.0059 Score=55.18 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 326
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.46 E-value=0.0074 Score=54.58 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
No 327
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.43 E-value=0.0062 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999876
No 328
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.42 E-value=0.037 Score=52.15 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---------CCChHHHhcCCeEEEee
Q 010938 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIH---------QPSSEVFELFDRLYLLS 269 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH---------~~~~~i~~~~D~v~~L~ 269 (497)
+.+++++||--- +|+. +++.++.++..|+.||++-+ .++.++..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6643 33777777778999999999 77788999999999886
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.40 E-value=0.0064 Score=54.66 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998764
No 330
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.39 E-value=0.0071 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 331
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.39 E-value=0.0072 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 332
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.38 E-value=0.0085 Score=55.05 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.0
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999843
No 333
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.38 E-value=0.0046 Score=63.38 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=34.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010938 212 RPRLLFLDEPTSGLD---SAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 212 ~p~lllLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
.|.++++||-=.=++ +.....+.+.+++.++.|..++++||.|.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 578889999877774 66777778888888777888888898875
No 334
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.38 E-value=0.0073 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 335
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.37 E-value=0.0071 Score=53.83 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.4
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999854
No 336
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.37 E-value=0.0088 Score=53.23 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=21.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
++++|.|++||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999854
No 337
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.36 E-value=0.0068 Score=54.35 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010938 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999998753
No 338
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.36 E-value=0.0083 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 339
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.36 E-value=0.0083 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.33 E-value=0.007 Score=56.65 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999854
No 341
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.33 E-value=0.0077 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 342
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.32 E-value=0.0087 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 343
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.32 E-value=0.0076 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 344
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.31 E-value=0.0077 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 345
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.30 E-value=0.0094 Score=52.83 Aligned_cols=22 Identities=41% Similarity=0.306 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
No 346
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.29 E-value=0.0099 Score=57.42 Aligned_cols=25 Identities=36% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999865
No 347
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.28 E-value=0.0082 Score=52.41 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010938 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~~IlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999753
No 348
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.25 E-value=0.0077 Score=54.41 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999854
No 349
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.24 E-value=0.0091 Score=53.69 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987543
No 350
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.22 E-value=0.01 Score=56.69 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999999999999743
No 351
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.21 E-value=0.0054 Score=54.74 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.6
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q 010938 83 TLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G 104 (497)
-.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999863
No 352
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.0088 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 353
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.20 E-value=0.008 Score=53.10 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 354
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.19 E-value=0.0097 Score=59.01 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999863
No 355
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.18 E-value=0.0091 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 356
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.18 E-value=0.0091 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999998653
No 357
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.16 E-value=0.16 Score=53.00 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987654
No 358
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.13 E-value=0.0095 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
No 359
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.13 E-value=0.0097 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 360
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.12 E-value=0.0081 Score=58.40 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998753
No 361
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.08 E-value=0.0095 Score=57.60 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
No 362
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.07 E-value=0.011 Score=58.70 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999863
No 363
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.05 E-value=0.01 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 364
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.04 E-value=0.01 Score=54.86 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 365
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.04 E-value=0.011 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 366
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.03 E-value=0.0096 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 367
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.02 E-value=0.011 Score=53.03 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.=-++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 368
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.01 E-value=0.011 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 369
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.01 E-value=0.0086 Score=54.84 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 370
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.01 E-value=0.012 Score=56.44 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998644
No 371
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.99 E-value=0.01 Score=60.75 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q 010938 85 TALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 85 ~~IlG~nGaGKSTLL~~L~G~ 105 (497)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 372
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.98 E-value=0.011 Score=56.77 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999754
No 373
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.98 E-value=0.013 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.7
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-+++|.|++||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999843
No 374
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.98 E-value=0.011 Score=53.29 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 375
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.01 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.|.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 376
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.94 E-value=0.012 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 377
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.93 E-value=0.14 Score=62.59 Aligned_cols=150 Identities=16% Similarity=0.156 Sum_probs=85.0
Q ss_pred ceeeceEE--EEeCCeEEEEECCCCChHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCcCcEEEEcCCCCCCCCCCHHH
Q 010938 70 NVLEGLTG--YAEPGTLTALMGPSGSGKSTLLDALSSRLASNAFLSGTILLNGHKTKLSFGTAAYVTQDDNLIGTLTVRE 147 (497)
Q Consensus 70 ~iL~~vs~--~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~e 147 (497)
.-|+.+-. =+++|+++.|.||+|+|||||...++..... .| ..+.|+.-+...-+ ++
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~----~G-------------~~vlyis~E~s~~~---~~- 427 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP---IY- 427 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CCEEEECTTSCCCH---HH-
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh----cC-------------CeEEEEEcCCCHHH---HH-
Confidence 34555542 5899999999999999999998777643211 11 12445544322111 10
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCC
Q 010938 148 TISYSARLRLPDKMPWSEKRTLVERTIIEMGLQDCADTVIGNWHLRGISGGERRRVSIALEIL--MRPRLLFLDEPTSGL 225 (497)
Q Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~--~~p~lllLDEPTsgL 225 (497)
+. .+|++. .+-.+-+ ..+.. +-+.+++.++ .+|++++.|.-++-.
T Consensus 428 ----a~----------------------~lGvd~-~~L~I~~----~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 428 ----AR----------------------KLGVDI-DNLLCSQ----PDTGE--QALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ----HH----------------------HTTCCT-TTCEEEC----CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----HH----------------------HcCCCH-HHeEEeC----CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 11 122210 0001111 12332 3456666665 479999999987655
Q ss_pred C-H------------HHHHHHHHHHHHH---Hh-CCCEEEEEeCCCCh---------------HHHhcCCeEEEeeCCeE
Q 010938 226 D-S------------AAAFFVTQTLRCL---SR-DGRTVIASIHQPSS---------------EVFELFDRLYLLSGGKT 273 (497)
Q Consensus 226 D-~------------~~~~~i~~~L~~l---~~-~g~tvI~~tH~~~~---------------~i~~~~D~v~~L~~G~i 273 (497)
. + .....+.+.|+.| ++ .|.+||++.|-... .+...+|-++.|+....
T Consensus 475 ~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 2 1 1233455666665 44 58999998875211 35677888888875543
No 378
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.93 E-value=0.011 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 379
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.92 E-value=0.013 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 380
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.92 E-value=0.012 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 381
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.011 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 382
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.91 E-value=0.0074 Score=55.96 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 383
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.91 E-value=0.015 Score=51.65 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998654
No 384
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.89 E-value=0.013 Score=56.70 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 385
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.88 E-value=0.014 Score=54.93 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 386
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.88 E-value=0.014 Score=57.23 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
...+.|.||+|+|||||.++|++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 368999999999999999999987644
No 387
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.86 E-value=0.012 Score=53.62 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 388
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.86 E-value=0.013 Score=52.88 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 389
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.83 E-value=0.012 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 390
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.82 E-value=0.014 Score=54.50 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998543
No 391
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.81 E-value=0.012 Score=57.25 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999863
No 392
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.81 E-value=0.023 Score=53.06 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=29.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
...++..-..+ .|..++|+||+|+|||||...|+..
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 44667665554 6789999999999999999999854
No 393
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.80 E-value=0.012 Score=53.80 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999999754
No 394
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.78 E-value=0.014 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 395
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.77 E-value=0.013 Score=57.80 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 396
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.76 E-value=0.012 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.7
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999853
No 397
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.76 E-value=0.014 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 398
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.74 E-value=0.017 Score=54.68 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=23.4
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+++..++.|+||+||||+|..+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998543
No 399
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.74 E-value=0.014 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.0
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998653
No 400
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.74 E-value=0.014 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 401
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.013 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 402
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.014 Score=52.50 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
No 403
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.73 E-value=0.014 Score=57.16 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.3
Q ss_pred CeEEEEECCCCChHHHHHHHHH
Q 010938 82 GTLTALMGPSGSGKSTLLDALS 103 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~ 103 (497)
..+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999998
No 404
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.72 E-value=0.014 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 405
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.72 E-value=0.014 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 406
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.71 E-value=0.014 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 407
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.71 E-value=0.015 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 408
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.71 E-value=0.011 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 409
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.70 E-value=0.013 Score=53.62 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 410
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.69 E-value=0.014 Score=53.37 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 411
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.69 E-value=0.015 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
No 412
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.69 E-value=0.014 Score=52.68 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 413
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.68 E-value=0.019 Score=54.06 Aligned_cols=27 Identities=48% Similarity=0.708 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
+|.++.|.|++||||||+++.|+..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999986654
No 414
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.68 E-value=0.0081 Score=59.31 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=18.9
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
++-+++|.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
No 415
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.66 E-value=0.017 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 416
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.66 E-value=0.015 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 67999999999999999998753
No 417
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.63 E-value=0.013 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 418
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.62 E-value=0.016 Score=53.88 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999853
No 419
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.60 E-value=0.012 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 420
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.014 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999987643
No 421
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.56 E-value=0.015 Score=55.46 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=21.5
Q ss_pred EeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 79 AEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 79 i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
..+|.++.|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998655
No 422
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.53 E-value=0.018 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.52 E-value=0.021 Score=53.96 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+..+.|+|++||||||+.+.|+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999854
No 424
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.52 E-value=0.019 Score=56.12 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEEECCCCChHHHHHHHHHc
Q 010938 83 TLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G 104 (497)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 425
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.52 E-value=0.015 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 426
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.52 E-value=0.018 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 588999999999999999988644
No 427
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.50 E-value=0.015 Score=56.65 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|.+|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 428
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.49 E-value=0.018 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57899999999999999988643
No 429
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.45 E-value=0.018 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 430
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.42 E-value=0.012 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=9.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999754
No 431
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.42 E-value=0.026 Score=56.97 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
++.++.|+||+|||||||-..|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999764
No 432
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.39 E-value=0.017 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 433
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.38 E-value=0.019 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 434
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.34 E-value=0.019 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35577899999999999999998654
No 435
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.34 E-value=0.022 Score=54.60 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
+|.++.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
No 436
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.30 E-value=0.018 Score=52.45 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010938 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G 104 (497)
-++|+|++|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 437
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.30 E-value=0.019 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 438
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.27 E-value=0.019 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999753
No 439
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.26 E-value=0.025 Score=59.59 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=29.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 71 VLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 71 iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 55555 566789999999999999999999998654
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.23 E-value=0.022 Score=59.01 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+..++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999753
No 441
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.21 E-value=0.02 Score=55.33 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 442
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.18 E-value=0.019 Score=53.39 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998654
No 443
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.025 Score=52.95 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 444
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.14 E-value=0.026 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
++.|+||+||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998543
No 445
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.021 Score=51.54 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
No 446
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.13 E-value=0.032 Score=52.36 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=39.7
Q ss_pred HhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCh---------HHHhcCCeEEEee
Q 010938 210 LMRPRLLFLDEPTS----GLDSAAAFFVTQTLRCLSR-DGRTVIASIHQPSS---------EVFELFDRLYLLS 269 (497)
Q Consensus 210 ~~~p~lllLDEPTs----gLD~~~~~~i~~~L~~l~~-~g~tvI~~tH~~~~---------~i~~~~D~v~~L~ 269 (497)
-.+|+++++|--+. .-|......++..|+.+++ .|.++++++|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45889999986432 1144455677777887776 48999999886321 1345688888774
No 447
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.12 E-value=0.028 Score=51.74 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=29.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010938 211 MRPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 211 ~~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~ 166 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDP 166 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCCh
Confidence 3578999999765 7877777766665432 2356788888774
No 448
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.12 E-value=0.026 Score=53.09 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
+|.++.+-|++||||||+++.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987654
No 449
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.11 E-value=0.026 Score=53.28 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.6
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLAS 108 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~~ 108 (497)
.+|.++.+.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999977653
No 450
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.10 E-value=0.027 Score=54.64 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.5
Q ss_pred eEEEEECCCCChHHHHHHHHHcCCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
No 451
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.09 E-value=0.025 Score=57.10 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999998754
No 452
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.08 E-value=0.028 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.7
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
|.+++|-|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999998765
No 453
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.02 E-value=0.012 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 454
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.01 E-value=0.032 Score=52.97 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+|.++.|.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998654
No 455
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.00 E-value=0.031 Score=55.85 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.1
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+.+++|+||+|||||||...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998654
No 456
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.026 Score=52.47 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 457
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.93 E-value=0.047 Score=49.88 Aligned_cols=35 Identities=20% Similarity=0.031 Sum_probs=27.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010938 69 HNVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 69 ~~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G 104 (497)
+..+|..-.. -.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455555544 4588999999999999999988864
No 458
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.91 E-value=0.012 Score=53.47 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=4.2
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999765
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.91 E-value=0.02 Score=55.18 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998655
No 460
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.91 E-value=0.087 Score=55.67 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHHH--HHHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010938 192 LRGISGGERRRVSIAL--EILM---------------RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 192 ~~~LSGGerqRv~IA~--aL~~---------------~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
..++||||+|-.-+|. +++. .=.++++||. +-+|......++++++++ |.-+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 4579999999744443 3332 1157999999 999999999999999876 7778888755
Q ss_pred ChHHHhcCCeEEEee
Q 010938 255 SSEVFELFDRLYLLS 269 (497)
Q Consensus 255 ~~~i~~~~D~v~~L~ 269 (497)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3566788888774
No 461
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.89 E-value=0.025 Score=51.81 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999864
No 462
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.89 E-value=0.026 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.3
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-.++|+|++|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999854
No 463
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.85 E-value=0.018 Score=51.86 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010938 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G 104 (497)
-++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
No 464
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.73 E-value=0.026 Score=59.11 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999864
No 465
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.69 E-value=0.028 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6889999999999999999854
No 466
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.63 E-value=0.035 Score=55.66 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++.|+||+|||||||-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999754
No 467
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.63 E-value=0.032 Score=51.76 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 468
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.57 E-value=0.03 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
-++|+|++|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 469
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.21 E-value=0.048 Score=49.88 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC---------hHHHhcCCeEEEee
Q 010938 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS---------SEVFELFDRLYLLS 269 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~---------~~i~~~~D~v~~L~ 269 (497)
+++++++||--- +|+ .+++.|+.+++.|..||++.++.. ..+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 543 366677777777999999888422 34566788886664
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.18 E-value=0.052 Score=54.12 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=21.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998653
No 471
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.13 E-value=0.014 Score=65.73 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=29.0
Q ss_pred eEEEEeCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 75 LTGYAEPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 75 vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
.++.+.+++.++|.||||+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356678999999999999999999999998753
No 472
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.06 E-value=0.051 Score=47.32 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010938 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
+..+|++||. ..|++..+..+.+.|... ..+..+|++|..+.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 4468999998 468888888888887322 22456777777653
No 473
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.03 E-value=0.049 Score=49.52 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=27.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Q 010938 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQP 254 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~ 254 (497)
++.++++||. ..+++.....+.+.+... ..+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6889999995 457777766676666553 2345677777664
No 474
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.03 E-value=0.042 Score=54.53 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Q 010938 212 RPRLLFLDEPTSGLDSAAAFFVTQTLRCLSRDGRTVIASIHQPS 255 (497)
Q Consensus 212 ~p~lllLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvI~~tH~~~ 255 (497)
++.++++|| ...|++.....+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776533 345666776653
No 475
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.98 E-value=0.051 Score=56.13 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
..+++|+||+|||||||...|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998654
No 476
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.95 E-value=0.054 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.8
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-.++|+|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999865
No 477
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.85 E-value=0.064 Score=53.77 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEECCCCChHHHHHHHHHc
Q 010938 77 GYAEPGTLTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 77 ~~i~~Ge~~~IlG~nGaGKSTLL~~L~G 104 (497)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999874
No 478
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.84 E-value=0.055 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999988654
No 479
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.84 E-value=0.053 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+||+|++||||||+.+.|+-.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999997543
No 480
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.83 E-value=0.047 Score=56.30 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.3
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010938 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
++|+|.+++|||||++.|+|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999864
No 481
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.80 E-value=0.025 Score=54.20 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q 010938 85 TALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 85 ~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999998753
No 482
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.89 E-value=0.02 Score=52.24 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHHc
Q 010938 84 LTALMGPSGSGKSTLLDALSS 104 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G 104 (497)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998864
No 483
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.67 E-value=0.062 Score=54.30 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998654
No 484
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.65 E-value=0.049 Score=56.66 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHHcC
Q 010938 84 LTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 485
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=92.62 E-value=0.036 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 486
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.56 E-value=0.064 Score=53.00 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.6
Q ss_pred eEEEEECCCCChHHHHHHHHHcC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
--++|+|++|+|||||++.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998875
No 487
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.46 E-value=0.067 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999864
No 488
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.38 E-value=0.041 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHH-HHcC
Q 010938 84 LTALMGPSGSGKSTLLDA-LSSR 105 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~-L~G~ 105 (497)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999998 5553
No 489
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.35 E-value=0.061 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
...+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467888999999999999999654
No 490
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.26 E-value=0.084 Score=49.19 Aligned_cols=26 Identities=35% Similarity=0.709 Sum_probs=22.8
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
|.+++|=|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999987654
No 491
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.22 E-value=0.071 Score=53.42 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcCCC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSRLA 107 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~~~ 107 (497)
.+|..+.|.||+|+|||||.+.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999997654
No 492
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.20 E-value=0.08 Score=52.46 Aligned_cols=25 Identities=40% Similarity=0.436 Sum_probs=22.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 493
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=92.20 E-value=0.057 Score=58.52 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=26.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCChHHHHHHHHHcCC
Q 010938 70 NVLEGLTGYAEPGTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 70 ~iL~~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
.+|..++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3566542 233578999999999999999999964
No 494
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.12 E-value=0.063 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCChHHHHHHHHHcC
Q 010938 81 PGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 81 ~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
++..++++|.+|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999986
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=92.07 E-value=0.014 Score=53.21 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHHcCC
Q 010938 84 LTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 84 ~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 496
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.06 E-value=0.082 Score=52.45 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 80 EPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 80 ~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+..-+.|.||+|+|||+|.++++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567899999999999999999865
No 497
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.03 E-value=0.059 Score=56.70 Aligned_cols=24 Identities=42% Similarity=0.599 Sum_probs=21.3
Q ss_pred CeEEEEECCCCChHHHHHHHHHcC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
|=.++|+|++|+|||||+|.|+|.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445899999999999999999975
No 498
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.02 E-value=0.074 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.6
Q ss_pred CeEEEEECCCCChHHHHHHHHHcCC
Q 010938 82 GTLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 82 Ge~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
+.-+.|.||+|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999998765
No 499
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=91.98 E-value=0.066 Score=57.57 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.9
Q ss_pred eEEEEECCCCChHHHHHHHHHcCC
Q 010938 83 TLTALMGPSGSGKSTLLDALSSRL 106 (497)
Q Consensus 83 e~~~IlG~nGaGKSTLL~~L~G~~ 106 (497)
-.++|+|..|+|||||+|.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
No 500
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=91.82 E-value=0.084 Score=53.28 Aligned_cols=32 Identities=31% Similarity=0.205 Sum_probs=24.8
Q ss_pred ceEEEEeCCeEEEEECCCCChHHHHHHHHHcC
Q 010938 74 GLTGYAEPGTLTALMGPSGSGKSTLLDALSSR 105 (497)
Q Consensus 74 ~vs~~i~~Ge~~~IlG~nGaGKSTLL~~L~G~ 105 (497)
.+.++++----++|+|.++||||||++.|++.
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 44455554445899999999999999999764
Done!