BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010939
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 526 bits (1354), Expect = e-149, Method: Compositional matrix adjust.
Identities = 254/494 (51%), Positives = 338/494 (68%), Gaps = 3/494 (0%)
Query: 1 MLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIY 60
++ N +Y+ +MDLQ+RN+KLFY++L ++E+ +PIVYTPTVG ACQ+Y ++
Sbjct: 69 VVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVF 128
Query: 61 SRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLY 120
+P+G+FI++ D+G + VL WPE I+ IVVTDGERILGLGDLGC+GMGIPVGKL+LY
Sbjct: 129 RKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALY 188
Query: 121 TALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYG 180
TA GG+ P CLPV +DVGT NE+LL D YIGLRQ+R G EY + L EFM AV YG
Sbjct: 189 TACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYG 248
Query: 181 ERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRF 240
LIQFEDFAN NAF LL KY + FNDDIQGTASV +AGL++A++ L+DQ
Sbjct: 249 MNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTI 308
Query: 241 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 300
LF GAGEA GIA LI + + K+ +P E+ KKIWLVDSKGLIV R SL K+ +A
Sbjct: 309 LFQGAGEAALGIAHLIVMALEKE-GLPKEKAIKKIWLVDSKGLIVKGR-ASLTQEKEKFA 366
Query: 301 HEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSEC 360
HEHE +K L V IKPT LIG + G F++++++ MA+ NE+PIIF+LSNPTS++EC
Sbjct: 367 HEHEEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAEC 426
Query: 361 TAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHD 419
+AE+ Y ++GRAIFASGSPFDP + PGQ NN+Y+FPG+ LG++ G ++ D
Sbjct: 427 SAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITD 486
Query: 420 DMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKD 479
++ QV+ ++ ++G LYPP IR +S IA ++ AY+ AT P P++
Sbjct: 487 NIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDAYQEKTATVYPEPQN 546
Query: 480 LVKYAESCMYSPAY 493
+ S MYS Y
Sbjct: 547 KEAFVRSQMYSTDY 560
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/497 (51%), Positives = 330/497 (66%), Gaps = 3/497 (0%)
Query: 1 MLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIY 60
+L N + L +Y+ + LQ+RN+KLFYK+L ++E PIVYTPTVG ACQ YG +
Sbjct: 46 ILKNFERLTSDLDRYILLXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAF 105
Query: 61 SRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLY 120
RP+G+FI++ D+G + L++WPE I+ IVVTDGERILGLGDLGC+G GIPVGKL+LY
Sbjct: 106 RRPRGLFITIHDRGHIATXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALY 165
Query: 121 TALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYG 180
TA GG++P CLPV +DVGT+NE LL D YIGLR KR GQ Y +LL EF AV YG
Sbjct: 166 TACGGVKPHQCLPVXLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYG 225
Query: 181 ERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRF 240
LIQFEDFAN NAF LL KY + FNDDIQGTASV +AGL++A++ L+D
Sbjct: 226 XNCLIQFEDFANANAFRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTV 285
Query: 241 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 300
LF GAGEA GIA LI K+ + EE K+IW VDSKGLIV R SL K+ +A
Sbjct: 286 LFQGAGEAALGIANLIVXAXQKE-GVSKEEAIKRIWXVDSKGLIVKGR-ASLTPEKEHFA 343
Query: 301 HEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSEC 360
HEH K L D V IKPT+LIG + G FT+++++ A+ N++PIIF+LSNPTS++EC
Sbjct: 344 HEHCEXKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNPTSKAEC 403
Query: 361 TAEEAYTWSQGRAIFASGSPFDPFEY-GDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHD 419
TAE+ Y +++GR IFASGSPFDP PGQ NN+Y+FPG+ LG+I G + D
Sbjct: 404 TAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGD 463
Query: 420 DMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKD 479
D+ +V++EN +G LYPP I+++S IA +A +AY A+ P P+D
Sbjct: 464 DVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPED 523
Query: 480 LVKYAESCMYSPAYRTY 496
L + S +YS Y +
Sbjct: 524 LEAFIRSQVYSTDYNCF 540
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/494 (50%), Positives = 337/494 (68%), Gaps = 4/494 (0%)
Query: 3 HNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSR 62
N+++ PL+KY+ +M +QERN+KLFY++L D++E L+PIVYTPTVG AC +YG I+ R
Sbjct: 51 RNLKKMTSPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRR 110
Query: 63 PQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTA 122
P+G+FIS+ D+G V ++ NWPE +++ +VVTDGERILGLGDLG +GMGIPVGKL LYTA
Sbjct: 111 PKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTA 170
Query: 123 LGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER 182
GIRP CLPV IDVGT+N LL D FY+GL QKR Q+Y +L+ EFM A+ YG
Sbjct: 171 CAGIRPDQCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRN 230
Query: 183 ILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLF 242
LIQFEDF NHNAF L KY + FNDDIQGTA+V LAGL++A K + +++ + LF
Sbjct: 231 TLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILF 290
Query: 243 LGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302
LGAGEA GIA LI + + + + +E +KKIW+ D GL+V R + +++P+ H
Sbjct: 291 LGAGEAALGIANLIVMSMV-ENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHS 349
Query: 303 H-EPVKELV-DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSEC 360
E + + DAVN +KP+ +IG +G GR FT +V+ AMAS+NE+P+IF+LSNPT+Q+EC
Sbjct: 350 APESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAEC 409
Query: 361 TAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHD 419
TAEEAYT ++GR +FASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D
Sbjct: 410 TAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISD 469
Query: 420 DMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKD 479
+ Q+T E +G LYPP NI+++S +IA +V Y +A P P+D
Sbjct: 470 SVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFVYPEPED 529
Query: 480 LVKYAESCMYSPAY 493
KY + + Y
Sbjct: 530 KAKYVKEQTWRSEY 543
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/494 (49%), Positives = 328/494 (66%), Gaps = 4/494 (0%)
Query: 3 HNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSR 62
N+++ PL+KY+ + +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ R
Sbjct: 70 RNLKKXTSPLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRR 129
Query: 63 PQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTA 122
P+G+FIS+ D+G V ++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA
Sbjct: 130 PKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTA 189
Query: 123 LGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER 182
GIRP CLPV IDVGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG
Sbjct: 190 CAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRN 249
Query: 183 ILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLF 242
LIQFEDF NHNAF L KY + FNDDIQGTA+V LAGL++A K + +++ + LF
Sbjct: 250 TLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILF 309
Query: 243 LGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302
LGAGEA GIA LI + + +E +KKIW D GL+V R + +++P+ H
Sbjct: 310 LGAGEAALGIANLIVXSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHS 368
Query: 303 H-EPVKELV-DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSEC 360
E + + DAVN +KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+EC
Sbjct: 369 APESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAEC 428
Query: 361 TAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHD 419
TAEEAYT ++GR +FASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D
Sbjct: 429 TAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISD 488
Query: 420 DMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKD 479
+ Q+T E +G LYPP NI+++S +IA +V Y A R P P+D
Sbjct: 489 SVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPED 548
Query: 480 LVKYAESCMYSPAY 493
KY + + Y
Sbjct: 549 KAKYVKERTWRSEY 562
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 492 bits (1267), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/494 (49%), Positives = 328/494 (66%), Gaps = 4/494 (0%)
Query: 3 HNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSR 62
N+++ PL+KY+ + +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ R
Sbjct: 70 RNLKKXTSPLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRR 129
Query: 63 PQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTA 122
P+G+FIS+ D+G V ++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA
Sbjct: 130 PKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTA 189
Query: 123 LGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER 182
GIRP CLPV IDVGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG
Sbjct: 190 CAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRN 249
Query: 183 ILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLF 242
LIQFEDF NHNAF L KY + FNDDIQGTA+V LAGL++A K + +++ + LF
Sbjct: 250 TLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILF 309
Query: 243 LGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302
LGAGEA GIA LI + + +E +KKIW D GL+V R + +++P+ H
Sbjct: 310 LGAGEAALGIANLIVXSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHS 368
Query: 303 H-EPVKELV-DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSEC 360
E + + DAVN +KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+EC
Sbjct: 369 APESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAEC 428
Query: 361 TAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHD 419
TAEEAYT ++GR +FASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D
Sbjct: 429 TAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISD 488
Query: 420 DMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKD 479
+ Q+T E +G LYPP NI+++S +IA +V Y A R P P+D
Sbjct: 489 SVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPED 548
Query: 480 LVKYAESCMYSPAY 493
KY + + Y
Sbjct: 549 KAKYVKERTWRSEY 562
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/494 (49%), Positives = 328/494 (66%), Gaps = 4/494 (0%)
Query: 3 HNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSR 62
N+++ PL+KY+ + +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ R
Sbjct: 50 RNLKKXTSPLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRR 109
Query: 63 PQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTA 122
P+G+FIS+ D+G V ++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA
Sbjct: 110 PKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTA 169
Query: 123 LGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER 182
GIRP CLPV IDVGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG
Sbjct: 170 CAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRN 229
Query: 183 ILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLF 242
LIQFEDF NHNAF L KY + FNDDIQGTA+V LAGL++A K + +++ + LF
Sbjct: 230 TLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILF 289
Query: 243 LGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302
LGAGEA GIA LI + + +E +KKIW D GL+V R + +++P+ H
Sbjct: 290 LGAGEAALGIANLIVXSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHS 348
Query: 303 H-EPVKELV-DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSEC 360
E + + DAVN +KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+EC
Sbjct: 349 APESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAEC 408
Query: 361 TAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHD 419
TAEEAYT ++GR +FASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D
Sbjct: 409 TAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISD 468
Query: 420 DMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKD 479
+ Q+T E +G LYPP NI+++S +IA +V Y A R P P+D
Sbjct: 469 SVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPED 528
Query: 480 LVKYAESCMYSPAY 493
KY + + Y
Sbjct: 529 KAKYVKERTWRSEY 542
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 491 bits (1265), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/494 (49%), Positives = 328/494 (66%), Gaps = 4/494 (0%)
Query: 3 HNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSR 62
N+++ PL+KY+ + +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ R
Sbjct: 48 RNLKKXTSPLEKYIYIXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRR 107
Query: 63 PQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTA 122
P+G+FIS+ D+G V ++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA
Sbjct: 108 PKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTA 167
Query: 123 LGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER 182
GIRP CLPV IDVGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG
Sbjct: 168 CAGIRPDRCLPVCIDVGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRN 227
Query: 183 ILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLF 242
LIQFEDF NHNAF L KY + FNDDIQGTA+V LAGL++A K + +++ + LF
Sbjct: 228 TLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILF 287
Query: 243 LGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302
LGAGEA GIA LI + + +E +KKIW D GL+V R + +++P+ H
Sbjct: 288 LGAGEAALGIANLIVXSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHS 346
Query: 303 H-EPVKELV-DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSEC 360
E + + DAVN +KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+EC
Sbjct: 347 APESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAEC 406
Query: 361 TAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHD 419
TAEEAYT ++GR +FASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D
Sbjct: 407 TAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISD 466
Query: 420 DMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKD 479
+ Q+T E +G LYPP NI+++S +IA +V Y A R P P+D
Sbjct: 467 SVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPED 526
Query: 480 LVKYAESCMYSPAY 493
KY + + Y
Sbjct: 527 KAKYVKERTWRSEY 540
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/496 (47%), Positives = 339/496 (68%), Gaps = 6/496 (1%)
Query: 1 MLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIY 60
++ +R+ L +Y+ + LQ+RN+KLFY+++ D+V+EL+PIVYTPTVG ACQ +G IY
Sbjct: 82 VITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIY 141
Query: 61 SRPQGVFISLKDKG--KVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLS 118
+P+G++I++ D K+ ++L NW E++++ IVVTDGERILGLGDLG +G+GIPVGKL+
Sbjct: 142 RKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLA 201
Query: 119 LYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQN 178
LY ALGG++P CLPV +DVGTNN LL+D FYIGLR KR G++Y LL FM A +
Sbjct: 202 LYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKK 261
Query: 179 YGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQ 238
YG++ LIQFEDFAN NAF LL+KY + +FNDDIQGTASV++AGL++ + ++ +
Sbjct: 262 YGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQE 321
Query: 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKK 297
++LF GAG A TGIAE+I ++ + + EE +I+L+D GL+ +R E + +H +
Sbjct: 322 KYLFFGAGAASTGIAEMIVHQMQNE-GISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQ- 379
Query: 298 PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ 357
+A + +++ + A +P LIG S F +EV+ AMA +NE+PIIF+LSNPTS+
Sbjct: 380 -FAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSK 438
Query: 358 SECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRV 417
+ECTAEEAYT++ G A++ASGSPF FE + + PGQ NNAYIFPG+ LG I+ V
Sbjct: 439 AECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHV 498
Query: 418 HDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPP 477
+D+ VT+++ G +YP K IR+IS IA E+A Y+ G A P P
Sbjct: 499 DNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANLYPQP 558
Query: 478 KDLVKYAESCMYSPAY 493
+DL KY + +Y+ Y
Sbjct: 559 EDLEKYVRAQVYNTEY 574
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 150/342 (43%), Gaps = 62/342 (18%)
Query: 90 VIVVTDGERILGLGDLGC-HGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 148
V VV+D R+LG GD+ G+G+ GK L LGGI +P+ ID
Sbjct: 93 VGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGID---AVPICID----------- 138
Query: 149 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLE--KYGTTH 206
K G+ + + EF+ ++ +G I ED + N + +L+ +
Sbjct: 139 -------SKNKEGKNDPDAVIEFVQRIQHTFGA---INLEDISQPNCYKILDVLRESCDI 188
Query: 207 LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNM 266
V++DD QGTASV LAGL++A+K + + + R +F+GAG + T LI +
Sbjct: 189 PVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP--- 245
Query: 267 PLEETRKKIWLVDSKGLIVSSR--LESLQHFKKPW--AHEHEPVKELVDAVNAIKPTILI 322
KKI + DSKG + + R ++ F + W P K A + +LI
Sbjct: 246 ------KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLI 299
Query: 323 GTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ---SECTAEEAYTWSQGRAIFASGS 379
S G K E + S+ EKPI+F +NP + E AY + GR F
Sbjct: 300 SLSTPGPGVVK--AEWIKSMGEKPIVFCCANPVPEIYPYEAKEAGAYIVATGRGDF---- 353
Query: 380 PFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDM 421
P Q NN+ FPG+ G ++ A ++ D+M
Sbjct: 354 -------------PNQVNNSVGFPGILKGALIVRARKITDNM 382
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 198/454 (43%), Gaps = 93/454 (20%)
Query: 31 KLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQV 90
K+ +++ EEL + YTP V E C++ +D GKV E + K V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLV 66
Query: 91 IVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 148
VV+DG RILGLG++G G+PV GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---------------------D 104
Query: 149 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTH-- 206
F I +++ QE + + + + A+ +G I ED A+ F +LE+
Sbjct: 105 AFPIMIKE-----QEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDI 155
Query: 207 LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNM 266
VF+DD QGTA+VVLAGL++A+K +G +++ GAG AG L I + +
Sbjct: 156 PVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAG-----FATLRILTEAGV 210
Query: 267 PLEETRKKIWLVDSKGLIVSSRLESLQHFK-KPWAH--------EHEPVKELVDAVNAIK 317
E R + LV+ K I++S L+ + F + W E P + L DA
Sbjct: 211 KPENVR-VVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA----- 264
Query: 318 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFAS 377
+LI + G K + + +NE I+F L+NP E EEA G I A+
Sbjct: 265 -DVLISFTRPGPGVIKP--QWIEKMNEDAIVFPLANPV--PEILPEEAK--KAGARIVAT 317
Query: 378 GSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQEN 437
G +Y P Q NN FPG+ G + A + D M V +E
Sbjct: 318 GRS----DY------PNQINNLLGFPGIFRGALDVRARTITDSMIIAAAKAIASIV-EEP 366
Query: 438 FDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLA 471
++ ++ P I + A A VA +A + G+A
Sbjct: 367 SEENIIPSPLNPI--VYAREARAVAEEAMKEGVA 398
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 175/401 (43%), Gaps = 88/401 (21%)
Query: 31 KLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQV 90
K+ +++ EEL + YTP V E C++ +D GKV E + K V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLV 66
Query: 91 IVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDE 149
VV+DG RILGLG++G G+ + GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGV---------------------DA 105
Query: 150 FYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTH--L 207
F I +++ QE + + + + A+ +G I ED A+ F +LE+
Sbjct: 106 FPIXIKE-----QEPNKFI-DIVKAIAPTFGG---INLEDIASPKCFYILERLREELDIP 156
Query: 208 VFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMP 267
VF+DD QGTA+VVLAGL++A+K +G +++ GAG AG L I + +
Sbjct: 157 VFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAG-----FATLRILTEAGVK 211
Query: 268 LEETRKKIWLVDSKGLIVSSRLESLQHFK-KPWAH--------EHEPVKELVDAVNAIKP 318
E R + LV+ K I++S L+ + F + W E P + L DA
Sbjct: 212 PENVR-VVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA------ 264
Query: 319 TILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASG 378
+LI + G K + + NE I+F L+NP E EEA G I A+G
Sbjct: 265 DVLISFTRPGPGVIKP--QWIEKXNEDAIVFPLANPV--PEILPEEAK--KAGARIVATG 318
Query: 379 SPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHD 419
+Y P Q NN FPG+ G + A + D
Sbjct: 319 RS----DY------PNQINNLLGFPGIFRGALDVRARTITD 349
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 147/391 (37%), Gaps = 92/391 (23%)
Query: 41 LPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERIL 100
L I YTP V KDK + + K V V++DG +L
Sbjct: 36 LSIAYTPGVASVSSAIA-------------KDK----TLAYDLTTKKNTVAVISDGTAVL 78
Query: 101 GLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKR 158
GLGD+G +PV GK +L+ A G+ +P+ +D E
Sbjct: 79 GLGDIGPEA-AMPVMEGKAALFKAFAGVD---AIPIVLDTKDTEE--------------- 119
Query: 159 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKY-GTTHL-VFNDDIQGT 216
+ + A+ +G I ED + F++ ++ H+ VF+DD GT
Sbjct: 120 ---------IISIVKALAPTFGG---INLEDISAPRCFEIEQRLIKECHIPVFHDDQHGT 167
Query: 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW 276
A VVLA + +++K L SL + + G G AG I T L K+
Sbjct: 168 AIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSI-----------TRKLLAAGATKVT 216
Query: 277 LVDSKGLIVSSRLESL--QHFKKPWAHEHE-PVKELVDAVNAIKPTILIGTSGQGRTFTK 333
+VD G+I L H E L DA+ I IG S G
Sbjct: 217 VVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEG--ADIFIGVSAPG-VLKA 273
Query: 334 EVVEAMASLNEKPIIFSLSNPTSQ---SECTAEEAYTWSQGRAIFASGSPFDPFEYGDNV 390
E + MA+ +P+IF+++NP + E AY GR+ F
Sbjct: 274 EWISKMAA---RPVIFAMANPIPEIYPDEALEAGAYIVGTGRSDF--------------- 315
Query: 391 FVPGQANNAYIFPGLGLGLIMSGAIRVHDDM 421
P Q NN FPG+ G + + A + +M
Sbjct: 316 --PNQINNVLAFPGIFRGALDARAKTITVEM 344
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 162/397 (40%), Gaps = 91/397 (22%)
Query: 27 KLFYKLLIDNVE-ELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPE 85
K+ L ++ V+ E L ++YTP V + + +D K W
Sbjct: 15 KIRTALPVEKVDRETLSLLYTPGVADVARACA-------------EDPEKTYVYTSRWN- 60
Query: 86 KNIQVIVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNE 143
V VV+DG +LGLG++G +G +PV GK L+ A I
Sbjct: 61 ---TVAVVSDGSAVLGLGNIGPYG-ALPVMEGKAFLFKAFADI----------------- 99
Query: 144 KLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYG 203
D F I L + E + + +++ ++G I ED F +L++
Sbjct: 100 ----DAFPICLSESEE------EKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLS 146
Query: 204 TTH--LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEIS 261
VF+DD QGTA VV A ++A+K + + + + G G AG I + +
Sbjct: 147 EEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL----- 201
Query: 262 KQTNMPLEETRKKIWLVDSKGLIVSSRLES-LQHFKKPWAHEHEPVKELVDAVNAIK-PT 319
L+ K + VD KG++ + E+ L + A P + D A++
Sbjct: 202 ------LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD 255
Query: 320 ILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECT-AEEAYTWSQGRAIFASG 378
IG S +G E ++ M+ KP+IF+L+NP + + A EA G I A+G
Sbjct: 256 FFIGVS-RGNILKPEWIKKMS---RKPVIFALANPVPEIDPELAREA-----GAFIVATG 306
Query: 379 SPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAI 415
D+ P Q NN FPG IM GA+
Sbjct: 307 R-------SDH---PNQVNNLLAFPG-----IMKGAV 328
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 159/392 (40%), Gaps = 86/392 (21%)
Query: 27 KLFYKLLIDNVE-ELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPE 85
K+ L ++ V+ E L ++YTP V + + +D K W
Sbjct: 25 KIRTALPVEKVDRETLSLLYTPGVADVARACA-------------EDPEKTYVYTSRWN- 70
Query: 86 KNIQVIVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNE 143
V VV+DG +LGLG++G +G +PV GK L+ A I
Sbjct: 71 ---TVAVVSDGSAVLGLGNIGPYG-ALPVXEGKAFLFKAFADI----------------- 109
Query: 144 KLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYG 203
D F I L + E + + +++ ++G I ED F +L++
Sbjct: 110 ----DAFPICLSESEE------EKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLS 156
Query: 204 TTH--LVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEIS 261
VF+DD QGTA VV A ++A+K + + + + G G AG I + +
Sbjct: 157 EEXNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL----- 211
Query: 262 KQTNMPLEETRKKIWLVDSKGLIVSSRLES-LQHFKKPWAHEHEPVKELVDAVNAIK-PT 319
L+ K + VD KG++ + E+ L + A P + D A++
Sbjct: 212 ------LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD 265
Query: 320 ILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECT-AEEAYTWSQGRAIFASG 378
IG S +G E ++ + KP+IF+L+NP + + A EA G I A+G
Sbjct: 266 FFIGVS-RGNILKPEWIKKXS---RKPVIFALANPVPEIDPELAREA-----GAFIVATG 316
Query: 379 SPFDPFEYGDNVFVPGQANNAYIFPGLGLGLI 410
D+ P Q NN FPG+ G +
Sbjct: 317 R-------SDH---PNQVNNLLAFPGIXKGAV 338
>pdb|1SI7|A Chain A, Structure Of E. Coli Trna Psi 13 Pseudouridine Synthase
Trud
Length = 369
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 242 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 296
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 179 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 235
Query: 297 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 353
V ++VD +A++ +G+G F T+E+ E +N+K ++ + +
Sbjct: 236 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELMITAAL 279
Query: 354 PTSQSECTAEEAYTWSQG 371
P S T EA + Q
Sbjct: 280 PGSGEWGTQREALAFEQA 297
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 433 VTQENFDKGLLYPPFKNIR 451
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNVK 233
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 433 VTQENFDKGLLYPPFKNIR 451
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNVK 233
>pdb|1SB7|A Chain A, Crystal Structure Of The E.Coli Pseudouridine Synthase
Trud
pdb|1SB7|B Chain B, Crystal Structure Of The E.Coli Pseudouridine Synthase
Trud
Length = 368
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 242 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 296
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 178 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 234
Query: 297 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 353
V ++VD +A++ +G+G F T+E+ E +N+K + + +
Sbjct: 235 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELXITAAL 278
Query: 354 PTSQSECTAEEAYTWSQG 371
P S T EA + Q
Sbjct: 279 PGSGEWGTQREALAFEQA 296
>pdb|1SZW|A Chain A, Crystal Structure Of E. Coli Trna Pseudouridine Synthase
Trud
pdb|1SZW|B Chain B, Crystal Structure Of E. Coli Trna Pseudouridine Synthase
Trud
Length = 379
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 242 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 296
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 181 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 237
Query: 297 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 353
V ++VD +A++ +G+G F T+E+ E +N+K + + +
Sbjct: 238 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELXITAAL 281
Query: 354 PTSQSECTAEEAYTWSQG 371
P S T EA + Q
Sbjct: 282 PGSGEWGTQREALAFEQA 299
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 433 VTQENFDKGLLYPPFKNIR 451
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNMK 233
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 433 VTQENFDKGLLYPPFKNIR 451
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNMK 233
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 297 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 37 EPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 93
Query: 356 SQSECTAE 363
+ +E
Sbjct: 94 LAGQLHSE 101
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 64 QGVFISLKDKGKVLEVLRNWPE---KNIQVIVVTDGERILGLG 103
G+ I + G++L+ ++N P KN+Q +V+ + +RIL +G
Sbjct: 175 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG 217
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 206 HLVFNDDIQGTASV-----VLAGLISAMKFLGGSLAD-------QRFLFLGAGEAGTGIA 253
H +N DI G SV ++ +AM+ LG S D ++ L +AG
Sbjct: 146 HYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQTVVEQAGVSAD 205
Query: 254 EL--IALEISKQTNMPLEETRKKIWLVDSKGLIVSS-----RLESLQHFKKPWAHEHEPV 306
+ + + + K +P EE ++ + + +V + L+++ + EHE V
Sbjct: 206 KFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITSTLSLKTIDEIAQRIGEEHEAV 265
Query: 307 KELVDAVNAIK 317
+EL D + I+
Sbjct: 266 RELRDFITQIE 276
>pdb|1P2Z|A Chain A, Refinement Of Adenovirus Type 2 Hexon With Cns
Length = 967
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 17 AMMDLQERNQKLFYKLLIDNV 37
A++DLQ+RN +L Y+LL+D++
Sbjct: 368 AVVDLQDRNTELSYQLLLDSI 388
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 297 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 356 SQSECTAE 363
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 297 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 356 SQSECTAE 363
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 297 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 356 SQSECTAE 363
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 17 AMMDLQERNQKLFYKLLIDNV 37
A++DLQ+RN +L Y+LL+D++
Sbjct: 356 AVVDLQDRNTELSYQLLLDSI 376
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 297 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 356 SQSECTAE 363
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 17 AMMDLQERNQKLFYKLLIDNV 37
A++DLQ+RN +L Y+LL+D++
Sbjct: 357 AVVDLQDRNTELSYQLLLDSI 377
>pdb|3M2L|A Chain A, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|B Chain B, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|C Chain C, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|D Chain D, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|E Chain E, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|F Chain F, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
pdb|3M2L|G Chain G, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
Length = 294
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 18/145 (12%)
Query: 101 GLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAI 160
G D+G + + G L Y G+ ID +N+KLL +R K I
Sbjct: 11 GTTDIGSNTT-VKTGDLVTYDKENGMHKKVFYSF-IDDKNHNKKLL------VIRTKGTI 62
Query: 161 GQEYAELLHEFMTA----------VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN 210
+Y E V+ + + Q D+ N+ D E + T FN
Sbjct: 63 AGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYFSTLTYGFN 122
Query: 211 DDIQGTASVVLAGLISAMKFLGGSL 235
++ G + + GLI A +G +L
Sbjct: 123 GNVTGDDTGKIGGLIGANVSIGHTL 147
>pdb|3M3R|A Chain A, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|B Chain B, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|C Chain C, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|D Chain D, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|E Chain E, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|F Chain F, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
pdb|3M3R|G Chain G, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
Comple Beta-Cyclodextrin
Length = 293
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 18/145 (12%)
Query: 101 GLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAI 160
G D+G + + G L Y G+ ID +N+KLL +R K I
Sbjct: 10 GTTDIGSNTT-VKTGDLVTYDKENGMHKKVFYSF-IDDKNHNKKLL------VIRTKGTI 61
Query: 161 GQEYAELLHEFMTA----------VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN 210
+Y E V+ + + Q D+ N+ D E + T FN
Sbjct: 62 AGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYFSTLTYGFN 121
Query: 211 DDIQGTASVVLAGLISAMKFLGGSL 235
++ G + + GLI A +G +L
Sbjct: 122 GNVTGDDTGKIGGLIGANVSIGHTL 146
>pdb|2OBE|A Chain A, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|B Chain B, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|C Chain C, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
Length = 932
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 17 AMMDLQERNQKLFYKLLIDNV 37
A++DLQ+RN +L Y+LL+D++
Sbjct: 338 AVVDLQDRNTELSYQLLLDSL 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,756,895
Number of Sequences: 62578
Number of extensions: 636720
Number of successful extensions: 1826
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1756
Number of HSP's gapped (non-prelim): 41
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)