Query 010939
Match_columns 497
No_of_seqs 138 out of 1124
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 3E-198 5E-203 1539.9 42.3 495 1-496 74-568 (582)
2 PRK13529 malate dehydrogenase; 100.0 9E-193 2E-197 1528.8 46.5 493 1-497 60-561 (563)
3 PLN03129 NADP-dependent malic 100.0 1E-192 3E-197 1532.1 46.3 497 1-497 85-581 (581)
4 PTZ00317 NADP-dependent malic 100.0 2E-190 5E-195 1509.2 46.0 490 1-492 62-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 2E-120 3E-125 940.5 31.0 414 2-496 11-431 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 1E-112 2E-117 942.7 34.9 370 38-486 34-420 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 1E-111 2E-116 939.4 34.8 369 38-486 38-424 (763)
8 PRK07232 bifunctional malic en 100.0 7E-111 2E-115 928.7 34.7 359 38-474 30-406 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 3E-100 6E-105 762.5 29.2 277 213-491 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 8.6E-97 2E-101 729.5 20.0 252 213-466 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 9.2E-94 2E-98 707.2 25.3 251 213-465 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 4.5E-83 9.7E-88 603.0 9.2 182 22-203 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 6E-59 1.3E-63 453.1 22.3 223 213-465 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 1.8E-08 4E-13 84.2 11.6 86 215-352 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.8 0.00041 8.9E-09 74.6 15.6 159 158-355 105-302 (425)
16 PLN02477 glutamate dehydrogena 97.5 0.0026 5.7E-08 68.3 16.1 186 159-367 112-324 (410)
17 TIGR01035 hemA glutamyl-tRNA r 97.5 0.0006 1.3E-08 72.8 10.3 121 214-362 158-284 (417)
18 PRK14031 glutamate dehydrogena 97.4 0.014 3E-07 63.4 19.0 168 159-340 134-332 (444)
19 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.003 6.5E-08 62.2 12.2 130 216-367 2-140 (217)
20 cd00401 AdoHcyase S-adenosyl-L 97.3 0.0039 8.4E-08 67.0 13.5 129 205-367 163-302 (413)
21 PRK09414 glutamate dehydrogena 97.3 0.015 3.3E-07 63.1 18.1 189 159-367 138-357 (445)
22 PTZ00079 NADP-specific glutama 97.2 0.032 7E-07 60.7 19.3 189 159-367 143-366 (454)
23 PRK00045 hemA glutamyl-tRNA re 97.2 0.0018 3.8E-08 69.3 9.5 121 214-355 160-283 (423)
24 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0029 6.3E-08 64.9 10.6 131 194-355 140-276 (311)
25 TIGR00936 ahcY adenosylhomocys 97.1 0.0066 1.4E-07 65.2 13.6 127 205-365 156-293 (406)
26 TIGR02853 spore_dpaA dipicolin 97.1 0.0034 7.3E-08 64.1 11.0 139 213-380 127-265 (287)
27 PLN02494 adenosylhomocysteinas 97.0 0.0085 1.8E-07 65.4 13.2 130 205-368 215-355 (477)
28 PRK14982 acyl-ACP reductase; P 97.0 0.0061 1.3E-07 64.0 11.5 113 216-356 134-250 (340)
29 cd01080 NAD_bind_m-THF_DH_Cycl 97.0 0.0065 1.4E-07 57.6 10.6 92 219-355 27-119 (168)
30 PF01488 Shikimate_DH: Shikima 96.8 0.0019 4.1E-08 58.4 5.3 101 234-356 9-113 (135)
31 PRK14030 glutamate dehydrogena 96.7 0.082 1.8E-06 57.6 17.3 189 159-367 134-357 (445)
32 PRK08306 dipicolinate synthase 96.7 0.016 3.4E-07 59.4 11.3 128 219-380 134-266 (296)
33 cd01076 NAD_bind_1_Glu_DH NAD( 96.6 0.012 2.6E-07 58.2 9.6 124 213-355 7-140 (227)
34 COG0373 HemA Glutamyl-tRNA red 96.6 0.0093 2E-07 64.1 9.1 196 214-469 156-361 (414)
35 PLN00203 glutamyl-tRNA reducta 96.5 0.0092 2E-07 65.9 8.9 122 214-355 242-372 (519)
36 PRK14192 bifunctional 5,10-met 96.5 0.018 3.9E-07 59.0 10.4 109 215-367 137-250 (283)
37 cd05313 NAD_bind_2_Glu_DH NAD( 96.5 0.063 1.4E-06 54.4 13.8 133 215-367 16-167 (254)
38 cd01075 NAD_bind_Leu_Phe_Val_D 96.4 0.028 6.1E-07 54.3 10.5 123 215-367 4-129 (200)
39 PTZ00075 Adenosylhomocysteinas 96.2 0.099 2.1E-06 57.3 14.6 123 205-355 215-344 (476)
40 PRK14175 bifunctional 5,10-met 96.2 0.02 4.4E-07 58.8 8.6 85 215-337 136-221 (286)
41 PRK08293 3-hydroxybutyryl-CoA 96.1 0.12 2.5E-06 52.3 13.7 199 238-484 4-221 (287)
42 PLN00106 malate dehydrogenase 96.1 0.033 7.1E-07 58.1 9.8 118 222-355 4-138 (323)
43 PRK13940 glutamyl-tRNA reducta 96.1 0.023 5E-07 61.1 8.7 113 216-355 161-276 (414)
44 PRK12549 shikimate 5-dehydroge 96.0 0.024 5.2E-07 57.7 8.1 90 222-328 112-203 (284)
45 cd01078 NAD_bind_H4MPT_DH NADP 95.8 0.06 1.3E-06 51.0 9.4 54 216-281 7-61 (194)
46 cd01065 NAD_bind_Shikimate_DH 95.7 0.043 9.3E-07 49.4 7.6 108 222-355 4-120 (155)
47 TIGR00518 alaDH alanine dehydr 95.5 0.053 1.2E-06 57.3 8.6 222 74-353 21-268 (370)
48 PF00670 AdoHcyase_NAD: S-aden 95.2 0.12 2.7E-06 49.1 9.3 119 214-366 3-122 (162)
49 PRK00676 hemA glutamyl-tRNA re 95.1 0.093 2E-06 55.2 9.0 90 233-356 170-265 (338)
50 PF00208 ELFV_dehydrog: Glutam 95.0 0.063 1.4E-06 53.8 7.1 129 211-355 5-151 (244)
51 TIGR01809 Shik-DH-AROM shikima 95.0 0.059 1.3E-06 54.8 6.9 94 222-335 108-208 (282)
52 TIGR02356 adenyl_thiF thiazole 95.0 0.078 1.7E-06 51.3 7.5 38 233-281 17-54 (202)
53 cd00650 LDH_MDH_like NAD-depen 94.9 0.053 1.1E-06 54.1 6.1 126 240-379 1-145 (263)
54 PRK10792 bifunctional 5,10-met 94.9 0.29 6.3E-06 50.5 11.5 92 217-352 139-231 (285)
55 PRK05086 malate dehydrogenase; 94.8 0.18 3.9E-06 52.2 9.8 105 238-355 1-121 (312)
56 PRK14191 bifunctional 5,10-met 94.7 0.13 2.8E-06 53.0 8.5 83 217-337 137-220 (285)
57 PF03807 F420_oxidored: NADP o 94.7 0.066 1.4E-06 44.6 5.3 94 239-354 1-96 (96)
58 PF00899 ThiF: ThiF family; I 94.6 0.16 3.5E-06 45.5 7.8 37 236-283 1-37 (135)
59 TIGR00561 pntA NAD(P) transhyd 94.6 0.17 3.7E-06 56.0 9.5 222 86-353 28-285 (511)
60 PRK00066 ldh L-lactate dehydro 94.5 0.092 2E-06 54.4 6.9 126 238-380 7-149 (315)
61 cd05212 NAD_bind_m-THF_DH_Cycl 94.4 0.39 8.4E-06 44.5 10.0 81 219-337 10-91 (140)
62 cd05296 GH4_P_beta_glucosidase 94.3 0.096 2.1E-06 56.5 6.9 125 238-378 1-166 (419)
63 PTZ00082 L-lactate dehydrogena 94.1 0.19 4E-06 52.3 8.3 126 236-379 5-154 (321)
64 cd05291 HicDH_like L-2-hydroxy 94.1 0.18 3.9E-06 51.6 8.1 125 239-380 2-144 (306)
65 PTZ00117 malate dehydrogenase; 94.0 0.24 5.2E-06 51.3 8.7 126 236-379 4-148 (319)
66 PRK12475 thiamine/molybdopteri 94.0 0.15 3.3E-06 53.3 7.3 102 233-350 20-147 (338)
67 cd05197 GH4_glycoside_hydrolas 94.0 0.15 3.2E-06 55.1 7.4 125 238-378 1-166 (425)
68 PRK07531 bifunctional 3-hydrox 93.9 0.83 1.8E-05 50.1 13.2 123 238-385 5-144 (495)
69 PRK09424 pntA NAD(P) transhydr 93.9 0.34 7.4E-06 53.7 10.2 224 87-362 30-296 (509)
70 PRK08762 molybdopterin biosynt 93.8 0.16 3.4E-06 53.6 7.3 104 233-352 131-258 (376)
71 TIGR02355 moeB molybdopterin s 93.8 0.17 3.6E-06 50.5 7.0 38 233-281 20-57 (240)
72 PRK05600 thiamine biosynthesis 93.8 0.19 4E-06 53.4 7.7 102 233-350 37-162 (370)
73 PRK06035 3-hydroxyacyl-CoA deh 93.8 0.91 2E-05 45.8 12.3 32 238-281 4-35 (291)
74 PRK08328 hypothetical protein; 93.7 0.04 8.6E-07 54.5 2.4 118 199-355 7-130 (231)
75 PF01210 NAD_Gly3P_dh_N: NAD-d 93.7 0.094 2E-06 48.5 4.7 85 239-343 1-93 (157)
76 cd00757 ThiF_MoeB_HesA_family 93.6 0.26 5.6E-06 48.4 7.9 38 233-281 17-54 (228)
77 PRK12749 quinate/shikimate deh 93.6 0.16 3.4E-06 52.1 6.6 49 222-281 109-157 (288)
78 PRK08223 hypothetical protein; 93.6 0.14 3.1E-06 52.7 6.3 128 196-354 4-154 (287)
79 PRK08644 thiamine biosynthesis 93.5 0.18 3.8E-06 49.4 6.5 38 233-281 24-61 (212)
80 cd01079 NAD_bind_m-THF_DH NAD 93.5 0.53 1.1E-05 46.3 9.5 102 219-337 35-147 (197)
81 PRK06223 malate dehydrogenase; 93.4 0.21 4.5E-06 50.8 6.9 126 238-381 3-147 (307)
82 PF00056 Ldh_1_N: lactate/mala 93.2 0.059 1.3E-06 49.4 2.5 105 238-355 1-121 (141)
83 PRK14189 bifunctional 5,10-met 93.2 0.36 7.9E-06 49.8 8.4 83 217-337 138-221 (285)
84 PRK14027 quinate/shikimate deh 93.0 0.22 4.8E-06 51.0 6.4 49 222-281 112-160 (283)
85 PRK14178 bifunctional 5,10-met 92.9 0.34 7.3E-06 49.9 7.6 83 217-337 132-215 (279)
86 cd05297 GH4_alpha_glucosidase_ 92.8 0.28 6.2E-06 52.7 7.3 127 238-380 1-170 (423)
87 PRK15076 alpha-galactosidase; 92.7 0.32 6.9E-06 52.7 7.5 128 238-381 2-173 (431)
88 PRK14176 bifunctional 5,10-met 92.7 0.52 1.1E-05 48.7 8.7 83 217-337 144-227 (287)
89 PRK14194 bifunctional 5,10-met 92.7 0.49 1.1E-05 49.2 8.5 91 218-352 140-231 (301)
90 PTZ00325 malate dehydrogenase; 92.7 0.6 1.3E-05 48.7 9.3 106 235-355 6-128 (321)
91 TIGR02992 ectoine_eutC ectoine 92.5 0.6 1.3E-05 48.4 9.0 117 222-365 116-238 (326)
92 PRK11880 pyrroline-5-carboxyla 92.4 1.7 3.7E-05 43.0 11.7 121 238-386 3-123 (267)
93 PRK08605 D-lactate dehydrogena 92.3 0.96 2.1E-05 47.1 10.2 94 232-354 141-238 (332)
94 PRK00257 erythronate-4-phospha 92.3 1.1 2.4E-05 47.9 10.9 118 204-353 80-208 (381)
95 cd01487 E1_ThiF_like E1_ThiF_l 92.3 0.44 9.6E-06 45.1 7.1 32 239-281 1-32 (174)
96 PRK12548 shikimate 5-dehydroge 92.3 0.32 7E-06 49.6 6.6 58 205-281 102-159 (289)
97 cd00704 MDH Malate dehydrogena 92.2 0.6 1.3E-05 48.7 8.5 120 239-368 2-139 (323)
98 TIGR01758 MDH_euk_cyt malate d 92.2 0.87 1.9E-05 47.5 9.7 134 239-382 1-154 (324)
99 PRK05690 molybdopterin biosynt 92.1 0.51 1.1E-05 47.1 7.7 38 233-281 28-65 (245)
100 COG0334 GdhA Glutamate dehydro 92.1 4.5 9.8E-05 43.9 15.1 187 158-367 111-325 (411)
101 PRK07688 thiamine/molybdopteri 92.1 0.21 4.6E-06 52.3 5.1 39 233-282 20-58 (339)
102 PRK09260 3-hydroxybutyryl-CoA 92.1 0.36 7.7E-06 48.7 6.5 32 238-281 2-33 (288)
103 PLN02928 oxidoreductase family 92.0 1.3 2.7E-05 46.7 10.8 140 214-376 120-284 (347)
104 PRK00258 aroE shikimate 5-dehy 92.0 0.38 8.3E-06 48.6 6.7 50 221-281 106-156 (278)
105 PRK14619 NAD(P)H-dependent gly 91.7 1.4 3.1E-05 45.0 10.5 33 237-281 4-36 (308)
106 PRK06129 3-hydroxyacyl-CoA deh 91.7 0.34 7.4E-06 49.5 6.0 32 238-281 3-34 (308)
107 PRK05597 molybdopterin biosynt 91.6 0.49 1.1E-05 49.8 7.2 105 233-353 24-152 (355)
108 PRK06130 3-hydroxybutyryl-CoA 91.5 0.77 1.7E-05 46.6 8.3 32 238-281 5-36 (311)
109 cd01336 MDH_cytoplasmic_cytoso 91.5 1.2 2.5E-05 46.5 9.7 121 239-369 4-142 (325)
110 COG0169 AroE Shikimate 5-dehyd 91.4 0.45 9.7E-06 49.0 6.5 48 223-281 110-159 (283)
111 PF02826 2-Hacid_dh_C: D-isome 91.3 0.68 1.5E-05 43.6 7.2 99 228-354 27-129 (178)
112 PRK15438 erythronate-4-phospha 91.3 1.9 4.1E-05 46.2 11.2 108 214-353 93-208 (378)
113 PRK14851 hypothetical protein; 91.0 1 2.2E-05 51.7 9.3 122 233-371 39-194 (679)
114 PRK14179 bifunctional 5,10-met 90.9 0.92 2E-05 46.8 8.2 83 217-337 138-221 (284)
115 COG0111 SerA Phosphoglycerate 90.9 1.8 3.8E-05 45.4 10.4 99 217-340 104-224 (324)
116 PRK07411 hypothetical protein; 90.8 0.57 1.2E-05 50.0 6.8 102 233-350 34-159 (390)
117 PRK14183 bifunctional 5,10-met 90.8 1 2.3E-05 46.4 8.4 84 216-337 136-220 (281)
118 PRK14190 bifunctional 5,10-met 90.6 1.1 2.4E-05 46.3 8.4 83 217-337 138-221 (284)
119 PRK07878 molybdopterin biosynt 90.4 0.77 1.7E-05 49.0 7.4 104 233-352 38-165 (392)
120 PRK14184 bifunctional 5,10-met 90.4 0.96 2.1E-05 46.8 7.8 87 217-337 137-224 (286)
121 PF01262 AlaDh_PNT_C: Alanine 90.2 0.18 3.8E-06 47.2 2.1 90 235-340 18-130 (168)
122 TIGR01763 MalateDH_bact malate 90.2 0.73 1.6E-05 47.5 6.8 124 238-379 2-144 (305)
123 PF02056 Glyco_hydro_4: Family 90.2 0.66 1.4E-05 45.0 6.0 109 239-361 1-151 (183)
124 cd01337 MDH_glyoxysomal_mitoch 90.0 1.3 2.8E-05 46.1 8.5 102 239-355 2-120 (310)
125 PRK08291 ectoine utilization p 89.9 1.2 2.7E-05 46.1 8.2 118 221-365 118-241 (330)
126 cd05298 GH4_GlvA_pagL_like Gly 89.8 0.94 2E-05 49.3 7.5 129 238-381 1-170 (437)
127 TIGR01915 npdG NADPH-dependent 89.7 1.5 3.3E-05 42.5 8.2 99 239-357 2-106 (219)
128 PRK14177 bifunctional 5,10-met 89.6 1.9 4E-05 44.6 9.1 82 218-337 140-222 (284)
129 TIGR02354 thiF_fam2 thiamine b 89.6 0.39 8.5E-06 46.6 4.0 108 233-360 17-127 (200)
130 PRK12550 shikimate 5-dehydroge 89.6 0.82 1.8E-05 46.6 6.5 48 222-281 108-155 (272)
131 TIGR01772 MDH_euk_gproteo mala 89.4 2.3 4.9E-05 44.3 9.7 126 239-379 1-146 (312)
132 PF02882 THF_DHG_CYH_C: Tetrah 89.3 1.9 4.2E-05 40.8 8.3 82 218-337 17-99 (160)
133 PRK14174 bifunctional 5,10-met 89.3 1.4 3.1E-05 45.6 8.1 86 218-337 140-226 (295)
134 cd01492 Aos1_SUMO Ubiquitin ac 88.8 0.42 9.2E-06 46.2 3.6 77 233-326 17-97 (197)
135 PRK07634 pyrroline-5-carboxyla 88.8 1.2 2.6E-05 43.4 6.7 118 236-378 3-121 (245)
136 PRK12921 2-dehydropantoate 2-r 88.7 1.8 3.9E-05 43.4 8.2 100 239-355 2-105 (305)
137 TIGR00872 gnd_rel 6-phosphoglu 88.7 1.5 3.2E-05 44.7 7.7 98 239-363 2-102 (298)
138 COG0578 GlpA Glycerol-3-phosph 88.5 3.8 8.2E-05 45.9 11.2 162 236-470 11-179 (532)
139 PRK14188 bifunctional 5,10-met 88.4 1.6 3.6E-05 45.2 7.8 81 217-335 138-219 (296)
140 PRK14172 bifunctional 5,10-met 88.1 2.4 5.3E-05 43.7 8.7 83 217-337 138-221 (278)
141 cd01338 MDH_choloroplast_like 88.0 2.8 6.1E-05 43.7 9.3 122 238-369 3-142 (322)
142 PLN02306 hydroxypyruvate reduc 87.9 4.3 9.3E-05 43.5 10.8 194 204-433 108-344 (386)
143 PRK14193 bifunctional 5,10-met 87.9 2.8 6.1E-05 43.3 9.0 85 217-337 138-223 (284)
144 TIGR01759 MalateDH-SF1 malate 87.6 2.9 6.4E-05 43.7 9.2 120 239-369 5-143 (323)
145 PRK13243 glyoxylate reductase; 87.5 4.5 9.9E-05 42.2 10.5 143 232-409 145-293 (333)
146 PRK06522 2-dehydropantoate 2-r 87.4 1.8 3.8E-05 43.2 7.2 100 239-355 2-103 (304)
147 PRK08374 homoserine dehydrogen 87.4 3.3 7.1E-05 43.4 9.4 103 238-349 3-120 (336)
148 PLN02516 methylenetetrahydrofo 87.2 2.7 6E-05 43.7 8.6 84 216-337 146-230 (299)
149 cd01485 E1-1_like Ubiquitin ac 87.1 0.56 1.2E-05 45.3 3.3 39 233-282 15-53 (198)
150 COG0686 Ald Alanine dehydrogen 87.0 1.1 2.5E-05 47.1 5.6 105 235-363 166-289 (371)
151 PRK00094 gpsA NAD(P)H-dependen 87.0 1.2 2.7E-05 44.9 5.8 101 239-355 3-108 (325)
152 TIGR01408 Ube1 ubiquitin-activ 86.9 0.37 8.1E-06 57.4 2.3 43 233-281 415-457 (1008)
153 PRK07679 pyrroline-5-carboxyla 86.9 11 0.00024 37.8 12.6 98 236-355 2-102 (279)
154 PRK14187 bifunctional 5,10-met 86.9 3.1 6.8E-05 43.2 8.7 83 217-337 140-223 (294)
155 PRK14168 bifunctional 5,10-met 86.9 3.1 6.8E-05 43.3 8.8 89 215-337 139-228 (297)
156 cd05290 LDH_3 A subgroup of L- 86.9 1.6 3.5E-05 45.2 6.7 123 239-379 1-145 (307)
157 PRK07066 3-hydroxybutyryl-CoA 86.8 1.9 4.2E-05 45.0 7.3 108 311-425 104-219 (321)
158 PRK06141 ornithine cyclodeamin 86.6 6.2 0.00013 40.8 10.8 105 236-365 124-233 (314)
159 PRK14171 bifunctional 5,10-met 86.5 3.2 7E-05 43.0 8.6 85 215-337 137-222 (288)
160 PRK14618 NAD(P)H-dependent gly 86.5 1 2.3E-05 46.1 5.1 32 238-281 5-36 (328)
161 PRK14166 bifunctional 5,10-met 86.1 3.5 7.7E-05 42.6 8.6 85 215-337 135-220 (282)
162 cd01339 LDH-like_MDH L-lactate 86.1 1.7 3.7E-05 44.3 6.3 117 240-379 1-141 (300)
163 PRK15116 sulfur acceptor prote 86.0 2.5 5.4E-05 43.2 7.5 107 233-358 26-136 (268)
164 PRK05442 malate dehydrogenase; 86.0 4.9 0.00011 42.1 9.7 121 239-369 6-144 (326)
165 PRK14170 bifunctional 5,10-met 85.8 3.7 8E-05 42.5 8.6 83 217-337 137-220 (284)
166 PRK09599 6-phosphogluconate de 85.6 4.7 0.0001 41.0 9.3 93 239-355 2-97 (301)
167 KOG2337 Ubiquitin activating E 85.5 0.7 1.5E-05 51.3 3.3 40 235-285 338-377 (669)
168 cd05293 LDH_1 A subgroup of L- 85.5 2.7 5.9E-05 43.6 7.6 126 238-380 4-147 (312)
169 PLN02602 lactate dehydrogenase 85.5 2.2 4.9E-05 45.1 7.0 123 238-379 38-180 (350)
170 PRK15317 alkyl hydroperoxide r 85.4 1.9 4.1E-05 47.3 6.7 86 184-281 147-243 (517)
171 TIGR01381 E1_like_apg7 E1-like 85.4 0.8 1.7E-05 52.2 3.9 40 233-283 334-373 (664)
172 PRK04346 tryptophan synthase s 85.1 34 0.00073 37.0 15.7 94 132-258 24-128 (397)
173 TIGR00507 aroE shikimate 5-deh 85.1 2.2 4.7E-05 42.9 6.4 49 221-281 101-149 (270)
174 PRK07574 formate dehydrogenase 85.0 5.2 0.00011 43.0 9.5 143 204-377 136-307 (385)
175 cd01483 E1_enzyme_family Super 84.8 1.3 2.8E-05 39.8 4.3 32 239-281 1-32 (143)
176 PRK09880 L-idonate 5-dehydroge 84.5 12 0.00025 38.3 11.6 48 222-281 156-203 (343)
177 PTZ00345 glycerol-3-phosphate 84.3 3.9 8.5E-05 43.5 8.2 24 235-258 9-32 (365)
178 PRK01710 murD UDP-N-acetylmura 84.2 5.5 0.00012 43.0 9.5 35 235-281 12-46 (458)
179 PLN02545 3-hydroxybutyryl-CoA 84.2 29 0.00064 35.0 14.2 32 238-281 5-36 (295)
180 cd00755 YgdL_like Family of ac 84.2 1.2 2.5E-05 44.5 4.0 37 234-281 8-44 (231)
181 PRK14185 bifunctional 5,10-met 83.6 5.5 0.00012 41.4 8.7 87 217-337 137-224 (293)
182 PRK09310 aroDE bifunctional 3- 83.6 2.3 5E-05 46.6 6.4 48 222-281 317-364 (477)
183 PRK12480 D-lactate dehydrogena 83.5 8.5 0.00019 40.2 10.2 111 232-376 141-256 (330)
184 PRK07340 ornithine cyclodeamin 83.3 15 0.00032 37.9 11.7 105 235-365 123-231 (304)
185 PRK14169 bifunctional 5,10-met 83.0 6 0.00013 40.9 8.7 84 216-337 135-219 (282)
186 PRK08410 2-hydroxyacid dehydro 82.8 13 0.00027 38.6 11.1 106 233-374 141-252 (311)
187 PF07992 Pyr_redox_2: Pyridine 82.8 2 4.4E-05 39.6 4.8 32 239-282 1-32 (201)
188 PRK14173 bifunctional 5,10-met 82.5 6.1 0.00013 41.0 8.5 83 217-337 135-218 (287)
189 PRK07530 3-hydroxybutyryl-CoA 82.5 5.8 0.00013 40.0 8.3 32 238-281 5-36 (292)
190 cd05292 LDH_2 A subgroup of L- 82.1 4.5 9.8E-05 41.6 7.5 126 239-381 2-144 (308)
191 PLN02616 tetrahydrofolate dehy 82.0 5.9 0.00013 42.4 8.4 84 216-337 210-294 (364)
192 PRK14181 bifunctional 5,10-met 81.9 7.7 0.00017 40.2 9.0 88 216-337 132-220 (287)
193 TIGR03140 AhpF alkyl hydropero 81.9 2 4.4E-05 47.1 5.1 84 185-280 149-243 (515)
194 PRK14180 bifunctional 5,10-met 81.8 6.8 0.00015 40.5 8.6 85 215-337 136-221 (282)
195 PLN02527 aspartate carbamoyltr 81.7 71 0.0015 33.3 16.5 137 168-327 86-228 (306)
196 PRK15469 ghrA bifunctional gly 81.6 11 0.00024 39.2 10.1 158 215-406 98-277 (312)
197 PRK06487 glycerate dehydrogena 81.6 11 0.00024 39.1 10.2 186 204-433 88-308 (317)
198 PRK06436 glycerate dehydrogena 81.6 23 0.0005 36.7 12.4 92 232-355 117-212 (303)
199 PRK14167 bifunctional 5,10-met 81.6 7.5 0.00016 40.5 8.8 86 218-337 138-224 (297)
200 PRK06153 hypothetical protein; 81.6 2 4.2E-05 46.4 4.7 101 233-355 172-278 (393)
201 PRK05808 3-hydroxybutyryl-CoA 81.3 40 0.00087 33.8 13.8 32 238-281 4-35 (282)
202 cd05294 LDH-like_MDH_nadp A la 81.3 8 0.00017 40.0 8.9 121 238-379 1-147 (309)
203 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.1 14 0.00031 40.9 11.3 37 391-427 185-221 (503)
204 PRK06476 pyrroline-5-carboxyla 80.9 28 0.00061 34.4 12.4 92 239-355 2-96 (258)
205 PF00070 Pyr_redox: Pyridine n 80.9 2.5 5.3E-05 34.3 4.1 35 239-285 1-35 (80)
206 PF02423 OCD_Mu_crystall: Orni 80.9 3.4 7.3E-05 42.8 6.1 104 237-365 128-238 (313)
207 TIGR03693 ocin_ThiF_like putat 80.9 8.3 0.00018 44.0 9.4 132 162-328 68-215 (637)
208 PRK14182 bifunctional 5,10-met 80.8 8.4 0.00018 39.9 8.8 83 217-337 137-220 (282)
209 PLN03139 formate dehydrogenase 80.6 12 0.00025 40.4 10.1 189 185-406 125-342 (386)
210 PRK06407 ornithine cyclodeamin 80.5 8.2 0.00018 39.9 8.7 105 236-365 116-226 (301)
211 KOG0029 Amine oxidase [Seconda 80.5 0.83 1.8E-05 50.5 1.5 25 235-259 13-37 (501)
212 PRK14620 NAD(P)H-dependent gly 80.2 4.1 8.8E-05 41.7 6.4 31 239-281 2-32 (326)
213 PRK07680 late competence prote 80.0 4.2 9.2E-05 40.7 6.3 98 239-356 2-100 (273)
214 TIGR02371 ala_DH_arch alanine 80.0 12 0.00027 38.9 9.8 116 223-365 116-236 (325)
215 COG2423 Predicted ornithine cy 79.2 9.4 0.0002 40.3 8.7 122 219-367 114-241 (330)
216 TIGR03366 HpnZ_proposed putati 79.0 13 0.00029 36.8 9.4 47 222-280 107-153 (280)
217 PRK12439 NAD(P)H-dependent gly 78.8 5 0.00011 41.8 6.6 22 237-258 7-28 (341)
218 KOG0685 Flavin-containing amin 78.7 1 2.2E-05 49.5 1.5 26 233-258 17-42 (498)
219 PRK08229 2-dehydropantoate 2-r 78.6 4.5 9.8E-05 41.4 6.1 102 238-356 3-111 (341)
220 PRK08618 ornithine cyclodeamin 78.1 12 0.00026 38.8 9.1 102 236-363 126-233 (325)
221 PRK06932 glycerate dehydrogena 78.1 17 0.00037 37.7 10.2 138 233-407 143-289 (314)
222 PRK15409 bifunctional glyoxyla 78.1 18 0.00039 37.7 10.4 162 232-433 140-309 (323)
223 PRK13581 D-3-phosphoglycerate 78.0 42 0.00092 37.4 13.8 206 204-447 86-316 (526)
224 PRK14186 bifunctional 5,10-met 77.9 11 0.00025 39.2 8.8 82 218-337 139-221 (297)
225 cd01491 Ube1_repeat1 Ubiquitin 77.7 2.1 4.6E-05 44.1 3.4 38 233-281 15-52 (286)
226 PLN02897 tetrahydrofolate dehy 77.7 9.8 0.00021 40.5 8.3 83 217-337 194-277 (345)
227 PF01113 DapB_N: Dihydrodipico 77.6 4.2 9E-05 36.3 4.8 96 238-350 1-97 (124)
228 COG5322 Predicted dehydrogenas 77.5 3.5 7.5E-05 42.9 4.8 46 213-258 143-189 (351)
229 PLN02819 lysine-ketoglutarate 77.5 12 0.00025 45.3 9.8 23 237-259 203-225 (1042)
230 PRK07877 hypothetical protein; 77.4 5 0.00011 46.5 6.6 105 233-352 103-229 (722)
231 cd01486 Apg7 Apg7 is an E1-lik 77.3 3.1 6.6E-05 43.6 4.4 32 239-281 1-32 (307)
232 cd01484 E1-2_like Ubiquitin ac 77.3 3.1 6.8E-05 41.6 4.4 32 239-281 1-32 (234)
233 PF13738 Pyr_redox_3: Pyridine 77.3 2.7 5.8E-05 39.0 3.7 30 241-281 1-30 (203)
234 PRK12490 6-phosphogluconate de 77.0 13 0.00028 37.9 8.9 93 239-355 2-97 (299)
235 TIGR01771 L-LDH-NAD L-lactate 76.8 5.9 0.00013 40.9 6.4 123 242-379 1-139 (299)
236 PRK08268 3-hydroxy-acyl-CoA de 76.7 9.5 0.00021 42.3 8.3 102 316-426 112-222 (507)
237 TIGR01327 PGDH D-3-phosphoglyc 76.5 92 0.002 34.7 15.9 196 204-436 84-304 (525)
238 PRK07231 fabG 3-ketoacyl-(acyl 76.3 6.6 0.00014 37.3 6.2 36 234-281 2-38 (251)
239 PRK02842 light-independent pro 75.8 14 0.00031 39.8 9.2 88 223-325 276-368 (427)
240 TIGR02622 CDP_4_6_dhtase CDP-g 75.7 8.4 0.00018 39.4 7.1 106 235-352 2-127 (349)
241 COG0476 ThiF Dinucleotide-util 75.6 3.7 8.1E-05 40.7 4.4 39 232-281 25-63 (254)
242 PRK09754 phenylpropionate diox 75.5 4.1 8.9E-05 42.8 4.9 36 236-281 2-37 (396)
243 PRK02472 murD UDP-N-acetylmura 75.5 8.3 0.00018 41.0 7.3 35 235-281 3-37 (447)
244 KOG0069 Glyoxylate/hydroxypyru 75.5 16 0.00035 38.7 9.2 100 215-340 120-244 (336)
245 COG0039 Mdh Malate/lactate deh 75.2 8.7 0.00019 40.4 7.1 108 238-368 1-126 (313)
246 PF01494 FAD_binding_3: FAD bi 75.2 3.9 8.4E-05 40.5 4.4 35 238-284 2-36 (356)
247 PRK11790 D-3-phosphoglycerate 75.1 60 0.0013 35.1 13.7 191 204-435 97-318 (409)
248 COG0345 ProC Pyrroline-5-carbo 75.1 17 0.00036 37.4 9.0 35 238-281 2-37 (266)
249 PRK06823 ornithine cyclodeamin 74.9 22 0.00048 37.0 10.0 117 223-366 116-237 (315)
250 PTZ00431 pyrroline carboxylate 74.5 68 0.0015 32.0 13.1 38 236-281 2-39 (260)
251 cd00300 LDH_like L-lactate deh 74.3 9.6 0.00021 39.1 7.1 123 240-379 1-141 (300)
252 cd01488 Uba3_RUB Ubiquitin act 74.1 4 8.8E-05 42.3 4.3 32 239-281 1-32 (291)
253 PLN02520 bifunctional 3-dehydr 74.1 7.2 0.00016 43.4 6.5 38 232-281 374-411 (529)
254 COG0240 GpsA Glycerol-3-phosph 73.8 7 0.00015 41.3 6.0 94 238-352 2-105 (329)
255 cd00377 ICL_PEPM Members of th 73.6 1E+02 0.0022 30.8 16.5 53 317-377 173-225 (243)
256 TIGR03376 glycerol3P_DH glycer 73.3 7.1 0.00015 41.2 6.0 20 239-258 1-20 (342)
257 PRK01713 ornithine carbamoyltr 73.2 25 0.00055 37.1 10.0 138 168-325 91-233 (334)
258 COG0190 FolD 5,10-methylene-te 73.0 11 0.00024 39.1 7.1 85 215-337 134-219 (283)
259 PLN00112 malate dehydrogenase 72.3 15 0.00032 40.4 8.2 134 238-379 101-252 (444)
260 COG1179 Dinucleotide-utilizing 72.1 3.4 7.4E-05 42.2 3.1 41 234-285 27-67 (263)
261 cd08237 ribitol-5-phosphate_DH 71.7 1.1E+02 0.0023 31.4 14.1 36 236-281 163-198 (341)
262 PRK06719 precorrin-2 dehydroge 71.6 5.9 0.00013 37.0 4.5 36 234-281 10-45 (157)
263 cd01489 Uba2_SUMO Ubiquitin ac 71.5 5.5 0.00012 41.7 4.6 32 239-281 1-32 (312)
264 PRK06718 precorrin-2 dehydroge 71.2 5.9 0.00013 38.5 4.5 35 234-280 7-41 (202)
265 PRK07589 ornithine cyclodeamin 71.1 43 0.00092 35.6 11.2 116 223-365 117-239 (346)
266 PRK07502 cyclohexadienyl dehyd 71.1 18 0.00039 36.9 8.2 34 238-281 7-40 (307)
267 TIGR01292 TRX_reduct thioredox 70.7 5.1 0.00011 39.2 4.0 31 239-281 2-32 (300)
268 PRK06249 2-dehydropantoate 2-r 70.7 12 0.00026 38.2 6.9 103 235-356 3-110 (313)
269 PF02737 3HCDH_N: 3-hydroxyacy 70.5 6.5 0.00014 37.4 4.5 97 239-350 1-111 (180)
270 KOG2250 Glutamate/leucine/phen 70.1 1.3E+02 0.0029 33.7 14.7 186 160-367 156-379 (514)
271 COG0499 SAM1 S-adenosylhomocys 69.6 21 0.00046 38.5 8.4 126 205-364 170-306 (420)
272 TIGR01470 cysG_Nterm siroheme 69.6 6.7 0.00014 38.3 4.5 36 234-281 6-41 (205)
273 PRK12409 D-amino acid dehydrog 69.3 6 0.00013 41.4 4.4 33 238-282 2-34 (410)
274 PRK06046 alanine dehydrogenase 68.7 26 0.00056 36.4 8.9 104 236-365 128-237 (326)
275 cd01490 Ube1_repeat2 Ubiquitin 68.5 8.3 0.00018 42.2 5.4 37 239-281 1-37 (435)
276 PRK15181 Vi polysaccharide bio 68.5 22 0.00048 36.5 8.3 105 231-352 9-141 (348)
277 TIGR01214 rmlD dTDP-4-dehydror 68.3 22 0.00049 34.7 8.0 60 239-328 1-61 (287)
278 PRK12429 3-hydroxybutyrate deh 68.2 26 0.00055 33.5 8.2 35 235-281 2-37 (258)
279 PRK14852 hypothetical protein; 68.0 11 0.00023 45.2 6.5 38 233-281 328-365 (989)
280 PF05834 Lycopene_cycl: Lycope 67.9 6.7 0.00014 41.1 4.4 35 240-284 2-36 (374)
281 TIGR01285 nifN nitrogenase mol 67.6 9.5 0.00021 41.3 5.6 81 225-326 299-382 (432)
282 PRK06270 homoserine dehydrogen 67.5 39 0.00085 35.4 10.0 105 238-349 3-123 (341)
283 PF03446 NAD_binding_2: NAD bi 66.9 5.5 0.00012 36.9 3.2 103 238-368 2-108 (163)
284 TIGR00873 gnd 6-phosphoglucona 66.8 15 0.00033 40.3 7.1 95 239-353 1-99 (467)
285 PRK07236 hypothetical protein; 66.8 8.2 0.00018 40.2 4.8 24 235-258 4-27 (386)
286 PRK10886 DnaA initiator-associ 66.4 23 0.00049 34.6 7.4 147 235-433 39-186 (196)
287 PF03447 NAD_binding_3: Homose 66.1 12 0.00026 32.5 5.0 88 244-349 1-88 (117)
288 PRK11883 protoporphyrinogen ox 66.0 4 8.7E-05 42.8 2.3 22 238-259 1-22 (451)
289 TIGR00465 ilvC ketol-acid redu 65.8 25 0.00055 36.7 8.1 25 235-259 1-25 (314)
290 PTZ00142 6-phosphogluconate de 65.8 12 0.00026 41.2 6.0 97 239-355 3-104 (470)
291 COG1486 CelF Alpha-galactosida 65.4 9 0.00019 42.1 4.8 124 236-374 2-166 (442)
292 PF13454 NAD_binding_9: FAD-NA 65.3 6.6 0.00014 36.1 3.3 36 241-283 1-36 (156)
293 COG1250 FadB 3-hydroxyacyl-CoA 65.2 1.8E+02 0.004 30.6 14.2 139 310-467 102-249 (307)
294 PRK14106 murD UDP-N-acetylmura 65.1 9.1 0.0002 40.8 4.8 36 234-281 2-37 (450)
295 PLN02688 pyrroline-5-carboxyla 65.1 14 0.00031 36.4 5.9 94 239-355 2-98 (266)
296 PRK11730 fadB multifunctional 65.1 23 0.00051 40.9 8.4 106 312-426 414-527 (715)
297 COG0569 TrkA K+ transport syst 65.0 9.6 0.00021 37.6 4.6 99 238-355 1-104 (225)
298 PF01266 DAO: FAD dependent ox 65.0 10 0.00022 37.6 4.8 33 239-283 1-33 (358)
299 PRK06847 hypothetical protein; 64.9 8.6 0.00019 39.4 4.4 33 237-281 4-36 (375)
300 PRK06184 hypothetical protein; 64.8 8.3 0.00018 41.9 4.5 35 236-282 2-36 (502)
301 TIGR01757 Malate-DH_plant mala 64.7 33 0.00072 37.0 8.9 132 238-381 45-198 (387)
302 PRK01438 murD UDP-N-acetylmura 64.2 10 0.00022 40.9 5.1 29 230-258 9-37 (480)
303 PRK08163 salicylate hydroxylas 64.2 8.7 0.00019 39.8 4.3 33 237-281 4-36 (396)
304 KOG1495 Lactate dehydrogenase 64.1 25 0.00054 36.8 7.4 109 233-355 16-140 (332)
305 PF13450 NAD_binding_8: NAD(P) 63.8 11 0.00023 30.3 3.9 30 242-283 1-30 (68)
306 TIGR02028 ChlP geranylgeranyl 63.6 8.2 0.00018 40.9 4.1 31 239-281 2-32 (398)
307 TIGR03169 Nterm_to_SelD pyridi 63.5 4.8 0.0001 41.4 2.3 36 239-283 1-36 (364)
308 TIGR01316 gltA glutamate synth 63.3 10 0.00023 40.8 4.9 36 234-281 130-165 (449)
309 PRK07233 hypothetical protein; 63.3 7.9 0.00017 40.2 3.9 31 239-281 1-31 (434)
310 TIGR02440 FadJ fatty oxidation 63.3 1.5E+02 0.0033 34.3 14.4 154 311-486 405-567 (699)
311 PRK12771 putative glutamate sy 62.9 15 0.00032 40.9 6.0 36 234-281 134-169 (564)
312 COG1052 LdhA Lactate dehydroge 62.5 51 0.0011 34.7 9.6 94 230-353 139-237 (324)
313 PRK00536 speE spermidine synth 62.4 8.1 0.00018 39.5 3.7 84 238-340 74-158 (262)
314 PRK12810 gltD glutamate syntha 62.3 10 0.00022 41.2 4.6 34 236-281 142-175 (471)
315 PRK12769 putative oxidoreducta 62.2 9.9 0.00022 43.1 4.7 34 236-281 326-359 (654)
316 PRK06928 pyrroline-5-carboxyla 62.1 33 0.00071 34.7 7.9 35 238-281 2-37 (277)
317 PRK09126 hypothetical protein; 62.0 9.7 0.00021 39.4 4.2 33 237-281 3-35 (392)
318 TIGR02023 BchP-ChlP geranylger 61.8 9.5 0.00021 39.9 4.1 31 239-281 2-32 (388)
319 PRK07364 2-octaprenyl-6-methox 61.8 8.9 0.00019 39.9 3.9 33 237-281 18-50 (415)
320 KOG2304 3-hydroxyacyl-CoA dehy 61.7 6 0.00013 40.3 2.5 32 238-281 12-43 (298)
321 PRK07251 pyridine nucleotide-d 61.6 10 0.00023 40.3 4.5 34 237-282 3-36 (438)
322 PRK05479 ketol-acid reductoiso 61.6 33 0.0007 36.3 8.0 25 234-258 14-38 (330)
323 PRK09564 coenzyme A disulfide 61.4 12 0.00026 39.7 4.9 37 238-284 1-37 (444)
324 PRK13512 coenzyme A disulfide 61.4 8.1 0.00018 41.4 3.6 33 239-281 3-35 (438)
325 PLN02172 flavin-containing mon 61.3 11 0.00025 41.1 4.8 25 234-258 7-31 (461)
326 COG2072 TrkA Predicted flavopr 61.3 11 0.00024 40.9 4.7 36 236-282 7-42 (443)
327 PF03435 Saccharop_dh: Sacchar 61.1 4.7 0.0001 42.2 1.7 118 240-378 1-123 (386)
328 cd01493 APPBP1_RUB Ubiquitin a 61.0 9.4 0.0002 41.6 4.0 38 233-281 16-53 (425)
329 PTZ00245 ubiquitin activating 60.5 8.6 0.00019 39.8 3.4 73 233-323 22-98 (287)
330 PRK06475 salicylate hydroxylas 60.1 10 0.00022 39.8 4.0 21 238-258 3-23 (400)
331 COG1063 Tdh Threonine dehydrog 60.1 41 0.00089 35.2 8.5 99 211-327 143-248 (350)
332 PRK11199 tyrA bifunctional cho 59.6 45 0.00098 35.4 8.8 148 237-418 98-256 (374)
333 PRK05749 3-deoxy-D-manno-octul 59.5 31 0.00066 36.3 7.5 38 307-349 311-349 (425)
334 PRK05732 2-octaprenyl-6-methox 59.3 13 0.00029 38.3 4.6 37 236-281 2-38 (395)
335 PRK11259 solA N-methyltryptoph 58.8 13 0.00027 38.1 4.4 35 237-283 3-37 (376)
336 PRK13938 phosphoheptose isomer 58.7 35 0.00076 33.3 7.2 90 236-340 44-134 (196)
337 TIGR01790 carotene-cycl lycope 58.7 11 0.00025 38.9 4.0 31 240-282 2-32 (388)
338 PRK04176 ribulose-1,5-biphosph 58.5 12 0.00026 37.5 4.1 36 236-283 24-59 (257)
339 cd05710 SIS_1 A subgroup of th 58.2 47 0.001 29.1 7.4 59 318-385 48-109 (120)
340 PLN02240 UDP-glucose 4-epimera 58.2 24 0.00051 35.8 6.2 107 234-352 2-132 (352)
341 PF13241 NAD_binding_7: Putati 58.2 8.2 0.00018 33.3 2.5 37 234-282 4-40 (103)
342 TIGR03026 NDP-sugDHase nucleot 57.9 41 0.00089 35.9 8.2 31 239-281 2-32 (411)
343 KOG2018 Predicted dinucleotide 57.8 12 0.00027 39.7 4.1 40 233-283 70-109 (430)
344 TIGR00031 UDP-GALP_mutase UDP- 57.8 13 0.00028 39.8 4.4 31 239-281 3-33 (377)
345 COG0654 UbiH 2-polyprenyl-6-me 57.6 14 0.00029 38.8 4.4 40 237-288 2-43 (387)
346 PRK06753 hypothetical protein; 57.4 13 0.00028 38.2 4.2 20 239-258 2-21 (373)
347 KOG2012 Ubiquitin activating e 57.3 5.9 0.00013 46.5 1.8 130 201-376 412-553 (1013)
348 PRK06416 dihydrolipoamide dehy 57.3 13 0.00028 39.8 4.4 33 238-282 5-37 (462)
349 PTZ00318 NADH dehydrogenase-li 57.2 9 0.0002 40.8 3.1 36 234-281 7-42 (424)
350 cd05006 SIS_GmhA Phosphoheptos 57.2 50 0.0011 30.8 7.8 23 317-341 101-123 (177)
351 PRK04965 NADH:flavorubredoxin 57.2 10 0.00023 39.4 3.5 36 238-283 3-38 (377)
352 PF02254 TrkA_N: TrkA-N domain 57.0 9.2 0.0002 32.6 2.6 98 240-355 1-100 (116)
353 PLN02695 GDP-D-mannose-3',5'-e 57.0 37 0.0008 35.5 7.5 97 236-352 20-137 (370)
354 PRK12829 short chain dehydroge 56.9 40 0.00087 32.3 7.3 36 234-281 8-44 (264)
355 PRK11749 dihydropyrimidine deh 56.8 14 0.0003 39.8 4.5 34 236-281 139-172 (457)
356 PRK00141 murD UDP-N-acetylmura 56.7 15 0.00032 40.0 4.7 25 234-258 12-36 (473)
357 PRK13403 ketol-acid reductoiso 56.6 54 0.0012 34.9 8.6 64 233-322 12-76 (335)
358 TIGR01377 soxA_mon sarcosine o 56.4 14 0.00031 37.8 4.3 34 239-284 2-35 (380)
359 TIGR02032 GG-red-SF geranylger 56.4 14 0.00031 35.8 4.1 33 239-283 2-34 (295)
360 TIGR01286 nifK nitrogenase mol 56.3 22 0.00048 39.6 6.0 33 226-258 352-384 (515)
361 TIGR01505 tartro_sem_red 2-hyd 56.2 42 0.00091 33.8 7.5 31 239-281 1-31 (291)
362 PRK03515 ornithine carbamoyltr 56.2 71 0.0015 33.8 9.5 107 204-325 121-233 (336)
363 PRK12828 short chain dehydroge 56.2 23 0.0005 33.2 5.4 36 234-281 4-40 (239)
364 PRK07045 putative monooxygenas 56.1 14 0.00031 38.3 4.3 21 238-258 6-26 (388)
365 PRK12778 putative bifunctional 55.5 17 0.00038 41.9 5.2 35 235-281 429-463 (752)
366 COG0644 FixC Dehydrogenases (f 55.5 15 0.00033 38.7 4.4 37 237-285 3-39 (396)
367 PRK07523 gluconate 5-dehydroge 55.4 41 0.00089 32.3 7.1 36 234-281 7-43 (255)
368 TIGR02082 metH 5-methyltetrahy 55.4 1.1E+02 0.0024 37.8 12.0 120 195-357 456-589 (1178)
369 PRK12831 putative oxidoreducta 55.4 16 0.00034 39.8 4.6 34 236-281 139-172 (464)
370 PRK07424 bifunctional sterol d 55.4 20 0.00043 38.8 5.3 55 200-281 156-211 (406)
371 TIGR00292 thiazole biosynthesi 55.4 14 0.00031 37.1 4.0 37 236-284 20-56 (254)
372 PRK06841 short chain dehydroge 55.3 27 0.00058 33.5 5.7 36 234-281 12-48 (255)
373 PRK07608 ubiquinone biosynthes 55.3 14 0.0003 38.1 4.0 33 238-282 6-38 (388)
374 KOG0743 AAA+-type ATPase [Post 55.2 20 0.00044 39.4 5.3 103 105-244 241-344 (457)
375 PF13407 Peripla_BP_4: Peripla 55.1 48 0.001 31.6 7.5 148 59-233 52-206 (257)
376 PRK08294 phenol 2-monooxygenas 55.0 13 0.00029 42.2 4.1 48 236-294 31-79 (634)
377 PRK07819 3-hydroxybutyryl-CoA 54.9 16 0.00035 37.2 4.4 32 238-281 6-37 (286)
378 PLN02852 ferredoxin-NADP+ redu 54.7 12 0.00026 41.4 3.6 42 230-281 19-60 (491)
379 TIGR01373 soxB sarcosine oxida 54.7 19 0.00042 37.6 5.0 38 236-283 29-66 (407)
380 PRK05993 short chain dehydroge 54.6 31 0.00068 34.0 6.3 33 237-281 4-37 (277)
381 PRK12814 putative NADPH-depend 54.6 16 0.00034 41.7 4.6 34 236-281 192-225 (652)
382 cd01968 Nitrogenase_NifE_I Nit 54.5 20 0.00043 38.3 5.2 86 225-326 275-365 (410)
383 PRK01747 mnmC bifunctional tRN 54.4 16 0.00034 41.5 4.6 33 238-282 261-293 (662)
384 TIGR01179 galE UDP-glucose-4-e 54.3 54 0.0012 32.2 7.9 97 239-350 1-119 (328)
385 cd04951 GT1_WbdM_like This fam 54.0 1.2E+02 0.0026 29.9 10.2 38 307-349 254-291 (360)
386 TIGR03736 PRTRC_ThiF PRTRC sys 54.0 20 0.00044 36.3 4.8 46 236-282 10-55 (244)
387 TIGR00441 gmhA phosphoheptose 53.9 94 0.002 28.6 8.9 37 317-355 79-117 (154)
388 PLN02676 polyamine oxidase 53.8 35 0.00076 37.5 7.0 37 236-283 25-61 (487)
389 PRK08849 2-octaprenyl-3-methyl 53.7 17 0.00037 37.8 4.4 33 237-281 3-35 (384)
390 PRK12779 putative bifunctional 53.6 17 0.00038 43.4 4.9 40 235-286 304-347 (944)
391 COG0771 MurD UDP-N-acetylmuram 53.6 80 0.0017 34.9 9.6 36 234-281 4-39 (448)
392 PRK11559 garR tartronate semia 53.6 53 0.0012 33.0 7.8 32 238-281 3-34 (296)
393 PRK09853 putative selenate red 53.5 16 0.00036 44.0 4.7 35 235-281 537-571 (1019)
394 PRK08013 oxidoreductase; Provi 53.5 17 0.00036 38.2 4.3 33 237-281 3-35 (400)
395 PRK14694 putative mercuric red 53.5 18 0.00038 39.1 4.6 34 236-281 5-38 (468)
396 PRK13394 3-hydroxybutyrate deh 53.4 54 0.0012 31.4 7.5 36 234-281 4-40 (262)
397 PRK12770 putative glutamate sy 53.4 21 0.00046 36.9 5.0 34 236-281 17-50 (352)
398 TIGR02053 MerA mercuric reduct 53.3 16 0.00035 39.2 4.2 30 240-281 3-32 (463)
399 PRK14806 bifunctional cyclohex 53.2 34 0.00074 39.2 7.0 34 238-281 4-37 (735)
400 PRK07588 hypothetical protein; 53.2 16 0.00036 37.9 4.2 21 238-258 1-21 (391)
401 TIGR01181 dTDP_gluc_dehyt dTDP 53.2 63 0.0014 31.6 8.1 78 239-328 1-84 (317)
402 PRK05976 dihydrolipoamide dehy 53.1 17 0.00038 39.1 4.5 33 237-281 4-36 (472)
403 TIGR01984 UbiH 2-polyprenyl-6- 53.0 14 0.00031 37.9 3.6 19 240-258 2-20 (382)
404 PRK10262 thioredoxin reductase 53.0 16 0.00036 36.9 4.0 24 235-258 4-27 (321)
405 cd01974 Nitrogenase_MoFe_beta 52.9 17 0.00036 39.3 4.3 97 232-355 298-405 (435)
406 TIGR00670 asp_carb_tr aspartat 52.9 2.7E+02 0.0059 29.0 13.0 136 168-327 85-226 (301)
407 PF01408 GFO_IDH_MocA: Oxidore 52.8 31 0.00067 29.4 5.2 89 239-348 2-90 (120)
408 PLN00093 geranylgeranyl diphos 52.8 16 0.00035 39.7 4.2 37 233-281 33-71 (450)
409 cd01979 Pchlide_reductase_N Pc 52.7 53 0.0011 35.0 7.9 35 224-258 263-297 (396)
410 PRK08244 hypothetical protein; 52.7 17 0.00036 39.4 4.2 32 238-281 3-34 (493)
411 PRK09987 dTDP-4-dehydrorhamnos 52.6 56 0.0012 32.9 7.8 86 239-352 2-104 (299)
412 PRK00711 D-amino acid dehydrog 52.5 18 0.00038 37.7 4.3 31 239-281 2-32 (416)
413 TIGR00658 orni_carb_tr ornithi 52.5 1.3E+02 0.0029 31.2 10.7 112 196-325 108-224 (304)
414 PRK06292 dihydrolipoamide dehy 52.5 19 0.0004 38.5 4.6 33 237-281 3-35 (460)
415 PRK11154 fadJ multifunctional 52.5 1.7E+02 0.0037 33.9 12.5 104 314-426 413-524 (708)
416 PF02558 ApbA: Ketopantoate re 52.4 21 0.00046 31.9 4.3 31 240-282 1-31 (151)
417 PRK08010 pyridine nucleotide-d 52.3 18 0.00039 38.6 4.4 32 238-281 4-35 (441)
418 PRK06912 acoL dihydrolipoamide 52.2 17 0.00036 39.1 4.2 31 239-281 2-32 (458)
419 PF00743 FMO-like: Flavin-bind 52.2 17 0.00037 40.6 4.3 32 238-281 2-33 (531)
420 TIGR02437 FadB fatty oxidation 52.1 56 0.0012 37.9 8.5 104 314-426 416-527 (714)
421 PRK11728 hydroxyglutarate oxid 51.5 19 0.00042 37.5 4.4 34 238-281 3-36 (393)
422 PRK06185 hypothetical protein; 51.4 18 0.00038 37.7 4.1 34 237-282 6-39 (407)
423 PRK08020 ubiF 2-octaprenyl-3-m 51.4 17 0.00036 37.7 3.9 34 237-282 5-38 (391)
424 PRK05714 2-octaprenyl-3-methyl 51.4 15 0.00032 38.4 3.5 33 238-282 3-35 (405)
425 PRK12266 glpD glycerol-3-phosp 51.4 18 0.00038 39.9 4.2 33 238-282 7-39 (508)
426 TIGR03364 HpnW_proposed FAD de 51.1 18 0.00039 37.0 4.1 32 239-282 2-33 (365)
427 PRK08773 2-octaprenyl-3-methyl 51.0 17 0.00037 37.7 3.9 34 237-282 6-39 (392)
428 COG1748 LYS9 Saccharopine dehy 50.9 26 0.00057 37.9 5.3 85 238-341 2-90 (389)
429 TIGR01350 lipoamide_DH dihydro 50.9 19 0.00041 38.4 4.3 31 239-281 3-33 (461)
430 PF01946 Thi4: Thi4 family; PD 50.9 23 0.0005 35.8 4.6 36 236-283 16-51 (230)
431 TIGR03315 Se_ygfK putative sel 50.6 18 0.0004 43.6 4.5 34 236-281 536-569 (1012)
432 PRK12826 3-ketoacyl-(acyl-carr 50.6 56 0.0012 30.9 7.1 36 234-281 3-39 (251)
433 PRK08850 2-octaprenyl-6-methox 50.5 20 0.00043 37.6 4.3 33 237-281 4-36 (405)
434 PRK06138 short chain dehydroge 50.4 33 0.00073 32.6 5.5 36 234-281 2-38 (252)
435 TIGR01317 GOGAT_sm_gam glutama 50.3 21 0.00046 39.0 4.6 34 236-281 142-175 (485)
436 PF13738 Pyr_redox_3: Pyridine 50.0 19 0.00041 33.3 3.7 36 234-281 164-199 (203)
437 PLN02268 probable polyamine ox 49.9 19 0.0004 38.1 4.0 20 239-258 2-21 (435)
438 COG0562 Glf UDP-galactopyranos 49.9 20 0.00042 38.4 4.0 32 239-282 3-34 (374)
439 PRK07067 sorbitol dehydrogenas 49.8 21 0.00044 34.5 4.0 36 234-281 3-39 (257)
440 TIGR03088 stp2 sugar transfera 49.6 1.2E+02 0.0025 30.8 9.6 37 308-349 265-301 (374)
441 PRK09186 flagellin modificatio 49.5 20 0.00044 34.3 3.9 35 235-281 2-37 (256)
442 PRK00048 dihydrodipicolinate r 49.5 1E+02 0.0022 30.9 9.1 88 238-350 2-90 (257)
443 PRK08243 4-hydroxybenzoate 3-m 49.5 22 0.00047 37.2 4.4 34 237-282 2-35 (392)
444 TIGR03219 salicylate_mono sali 49.4 20 0.00044 37.7 4.2 21 239-259 2-22 (414)
445 PRK06834 hypothetical protein; 49.4 22 0.00048 38.9 4.6 35 236-282 2-36 (488)
446 PF04320 DUF469: Protein with 49.3 14 0.0003 32.9 2.5 33 159-191 27-62 (101)
447 TIGR01988 Ubi-OHases Ubiquinon 49.2 19 0.00041 36.7 3.9 32 240-283 2-33 (385)
448 PRK12775 putative trifunctiona 49.1 22 0.00048 42.7 4.9 34 236-281 429-462 (1006)
449 PRK10157 putative oxidoreducta 49.1 20 0.00043 38.4 4.1 32 238-281 6-37 (428)
450 PRK07538 hypothetical protein; 49.1 20 0.00044 37.7 4.1 20 239-258 2-21 (413)
451 COG3380 Predicted NAD/FAD-depe 49.0 22 0.00047 37.3 4.1 32 239-282 3-34 (331)
452 PRK05249 soluble pyridine nucl 49.0 22 0.00047 38.1 4.4 33 237-281 5-37 (461)
453 PRK12562 ornithine carbamoyltr 48.9 1.6E+02 0.0035 31.2 10.7 114 196-325 114-233 (334)
454 PLN02463 lycopene beta cyclase 48.9 20 0.00043 39.1 4.1 32 238-281 29-60 (447)
455 PLN02342 ornithine carbamoyltr 48.8 2.5E+02 0.0054 30.1 12.1 132 168-325 130-267 (348)
456 COG1086 Predicted nucleoside-d 48.8 34 0.00074 38.9 5.9 74 235-326 248-334 (588)
457 cd05188 MDR Medium chain reduc 48.8 49 0.0011 31.3 6.4 47 223-281 121-167 (271)
458 PRK05868 hypothetical protein; 48.6 22 0.00047 37.2 4.3 21 238-258 2-22 (372)
459 PLN02653 GDP-mannose 4,6-dehyd 48.6 74 0.0016 32.3 8.0 82 234-327 3-93 (340)
460 PRK11101 glpA sn-glycerol-3-ph 48.5 22 0.00047 39.6 4.4 33 237-281 6-38 (546)
461 COG3288 PntA NAD/NADP transhyd 48.4 33 0.00072 36.4 5.4 50 308-362 237-292 (356)
462 TIGR01789 lycopene_cycl lycope 48.2 27 0.00059 36.8 4.9 36 240-285 2-37 (370)
463 PLN02366 spermidine synthase 48.0 44 0.00095 34.9 6.3 93 237-341 92-194 (308)
464 PRK06199 ornithine cyclodeamin 48.0 1.1E+02 0.0023 33.0 9.3 112 223-364 143-267 (379)
465 PRK12809 putative oxidoreducta 48.0 26 0.00055 39.8 4.9 35 236-282 309-343 (639)
466 TIGR01408 Ube1 ubiquitin-activ 47.9 16 0.00034 44.1 3.3 39 233-282 20-58 (1008)
467 TIGR03143 AhpF_homolog putativ 47.9 21 0.00045 39.7 4.2 32 239-282 6-37 (555)
468 PRK06115 dihydrolipoamide dehy 47.8 25 0.00054 38.1 4.6 33 237-281 3-35 (466)
469 PLN02927 antheraxanthin epoxid 47.7 18 0.00039 41.7 3.7 35 235-281 79-113 (668)
470 PRK06392 homoserine dehydrogen 47.7 76 0.0016 33.4 8.0 81 239-326 2-90 (326)
471 PRK08132 FAD-dependent oxidore 47.6 22 0.00047 39.2 4.2 33 237-281 23-55 (547)
472 PRK04690 murD UDP-N-acetylmura 47.6 24 0.00052 38.4 4.5 25 234-258 5-29 (468)
473 PTZ00367 squalene epoxidase; P 47.4 29 0.00063 39.1 5.2 42 229-282 22-66 (567)
474 PRK02102 ornithine carbamoyltr 47.2 1.9E+02 0.0042 30.6 10.9 112 197-325 116-232 (331)
475 PLN02568 polyamine oxidase 47.2 13 0.00027 41.6 2.3 24 236-259 4-27 (539)
476 PRK13369 glycerol-3-phosphate 47.2 22 0.00048 38.9 4.2 33 238-282 7-39 (502)
477 PRK07333 2-octaprenyl-6-methox 47.1 19 0.00041 37.3 3.5 20 239-258 3-22 (403)
478 TIGR01421 gluta_reduc_1 glutat 47.1 23 0.00051 38.1 4.3 33 237-281 2-34 (450)
479 CHL00076 chlB photochlorophyll 47.1 32 0.0007 38.3 5.5 79 233-325 301-382 (513)
480 PRK07494 2-octaprenyl-6-methox 47.0 22 0.00047 36.8 3.9 35 237-283 7-41 (388)
481 TIGR01318 gltD_gamma_fam gluta 46.9 29 0.00063 37.7 5.0 34 236-281 140-173 (467)
482 PRK00414 gmhA phosphoheptose i 46.9 1.1E+02 0.0024 29.4 8.5 35 317-353 111-147 (192)
483 PF12831 FAD_oxidored: FAD dep 46.9 24 0.00052 37.8 4.3 33 240-284 2-34 (428)
484 PRK06124 gluconate 5-dehydroge 46.8 89 0.0019 30.0 7.9 39 232-281 6-44 (256)
485 COG0665 DadA Glycine/D-amino a 46.8 29 0.00062 35.5 4.7 37 236-284 3-39 (387)
486 PRK10669 putative cation:proto 46.8 25 0.00055 39.0 4.6 32 238-281 418-449 (558)
487 PLN02172 flavin-containing mon 46.7 25 0.00055 38.4 4.5 37 234-282 201-237 (461)
488 PF03486 HI0933_like: HI0933-l 46.6 21 0.00045 38.6 3.8 31 239-281 2-32 (409)
489 TIGR02360 pbenz_hydroxyl 4-hyd 46.6 25 0.00055 36.9 4.4 33 238-282 3-35 (390)
490 PRK13937 phosphoheptose isomer 46.6 85 0.0018 29.9 7.6 22 317-340 106-127 (188)
491 PRK07478 short chain dehydroge 46.5 62 0.0014 31.1 6.8 36 234-281 3-39 (254)
492 cd03813 GT1_like_3 This family 46.3 1.1E+02 0.0023 33.2 9.2 37 308-349 363-399 (475)
493 PTZ00188 adrenodoxin reductase 46.2 36 0.00077 38.2 5.6 41 236-287 38-82 (506)
494 PRK06126 hypothetical protein; 45.8 24 0.00052 38.7 4.2 35 236-282 6-40 (545)
495 PRK12570 N-acetylmuramic acid- 45.7 61 0.0013 33.6 6.9 36 317-355 127-165 (296)
496 TIGR03589 PseB UDP-N-acetylglu 45.5 59 0.0013 33.2 6.8 106 235-352 2-125 (324)
497 PRK06171 sorbitol-6-phosphate 45.4 1E+02 0.0022 29.8 8.1 37 234-281 6-42 (266)
498 PRK06183 mhpA 3-(3-hydroxyphen 45.4 25 0.00054 38.7 4.3 34 236-281 9-42 (538)
499 PRK12416 protoporphyrinogen ox 45.3 14 0.0003 39.5 2.2 22 238-259 2-23 (463)
500 COG3349 Uncharacterized conser 45.3 17 0.00036 40.5 2.9 44 238-286 1-51 (485)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=2.5e-198 Score=1539.93 Aligned_cols=495 Identities=65% Similarity=1.094 Sum_probs=490.6
Q ss_pred ChhhhcccCCchhHHHHHHHHHHhhHHHHHHHhhcCcccccccccccchhHHHHHHhhhhcCCCcceecccCchhHHHHH
Q 010939 1 MLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVL 80 (497)
Q Consensus 1 ~~~~~~~~~~~l~k~~~L~~L~~~N~~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l 80 (497)
|+.+|+++++||+||+||++||+|||+||||+|++|+||+||||||||||+|||+||++||+|+|||||++|+|+|.++|
T Consensus 74 ~~~~l~~~~~~l~ky~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l 153 (582)
T KOG1257|consen 74 CMNNLRSLTSPLAKYIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVL 153 (582)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCceEEEEecCceeeccCCCCCcccccchhhHHHHhhhcCCCCCceeeEEeccCCCccccccCcccccccccCcc
Q 010939 81 RNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAI 160 (497)
Q Consensus 81 ~n~~~~~v~viVVTDG~rILGLGDlG~~gm~I~~GKl~Ly~a~gGi~P~~~lPi~LDvgtnn~~Ll~Dp~YlG~r~~R~~ 160 (497)
+|||.++|++||||||+|||||||||++|||||+||++||||||||+|++|||||||||||||+||+||||+|+|++|++
T Consensus 154 ~nWp~~~V~~IvVTDGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~ 233 (582)
T KOG1257|consen 154 KNWPERNVKAIVVTDGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVR 233 (582)
T ss_pred HhCCccceeEEEEeCCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceE
Q 010939 161 GQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRF 240 (497)
Q Consensus 161 g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~ri 240 (497)
|++||+|+||||+||.++|||+++||||||+++|||++|+|||.++|||||||||||+|+|||||+|+|++|++|+|++|
T Consensus 234 g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~i 313 (582)
T KOG1257|consen 234 GKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVI 313 (582)
T ss_pred ccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcE
Q 010939 241 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTI 320 (497)
Q Consensus 241 v~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptv 320 (497)
||+|||+||+|||+||+.+|+++ |+|+|||+|+|||+|++|||+++|+.+++++|++||++++++.+|+|||+.|||||
T Consensus 314 lf~GAG~A~~GIA~l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtv 392 (582)
T KOG1257|consen 314 LFLGAGEAALGIANLIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTV 392 (582)
T ss_pred EEecCchHHhhHHHHHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcE
Confidence 99999999999999999999995 99999999999999999999999976899999999999999999999999999999
Q ss_pred EEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeeeCCCCccccc
Q 010939 321 LIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAY 400 (497)
Q Consensus 321 LIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~ 400 (497)
|||+|+++|+|||||||+|+++|||||||||||||+++||||||||+||+||||||||||||||+++||+|+||||||+|
T Consensus 393 LiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~y 472 (582)
T KOG1257|consen 393 LIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAY 472 (582)
T ss_pred EEecccCCccCCHHHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHcCCCCCCCCchhH
Q 010939 401 IFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDL 480 (497)
Q Consensus 401 iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~AVa~~A~~~GlA~~~~~p~d~ 480 (497)
+|||||||+++|++++|||+||++||++||+.++++++.+|.||||+++||+||.+||++|.++|+++|+|+..|.|+|+
T Consensus 473 iFPGi~Lg~vlsg~~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~ 552 (582)
T KOG1257|consen 473 IFPGIGLGVVLSGARRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDK 552 (582)
T ss_pred ecchHHHHHHHcCCccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcccCCCCC
Q 010939 481 VKYAESCMYSPAYRTY 496 (497)
Q Consensus 481 ~~~i~~~mw~P~Y~~~ 496 (497)
.+|++++||.|+|+++
T Consensus 553 ~~~~~~~~y~~~Y~~~ 568 (582)
T KOG1257|consen 553 EKFIEESMYNPEYRNS 568 (582)
T ss_pred HHHHHhccCCcccccc
Confidence 9999999999999985
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=8.7e-193 Score=1528.82 Aligned_cols=493 Identities=51% Similarity=0.876 Sum_probs=483.7
Q ss_pred ChhhhcccCCchhHHHHHHHHHHhhHHHHHHHhhcCcccccccccccchhHHHHHHhhhhcCCCcceecccCchhHHHHH
Q 010939 1 MLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVL 80 (497)
Q Consensus 1 ~~~~~~~~~~~l~k~~~L~~L~~~N~~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l 80 (497)
+|.||++++++|+||+||++||+|||+||||++.+|+|||||||||||||+||++||++||+|+|||+|++|+|+|+++|
T Consensus 60 ~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l 139 (563)
T PRK13529 60 AYRQYQSKPTDLEKHIYLRNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDIL 139 (563)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCceEEEEecCceeeccCCCCCcccccchhhHHHHhhhcCCCCCceeeEEeccCCCccccccCcccccccccCcc
Q 010939 81 RNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAI 160 (497)
Q Consensus 81 ~n~~~~~v~viVVTDG~rILGLGDlG~~gm~I~~GKl~Ly~a~gGi~P~~~lPi~LDvgtnn~~Ll~Dp~YlG~r~~R~~ 160 (497)
+|||.++|++||||||||||||||||++|||||+||++|||+||||||++|||||||+|||||+||+||+|+||||||++
T Consensus 140 ~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~ 219 (563)
T PRK13529 140 QNAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIR 219 (563)
T ss_pred hcCCcccceEEEEeCCceeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceE
Q 010939 161 GQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRF 240 (497)
Q Consensus 161 g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~ri 240 (497)
|++||+|+||||++|+.+| |+++||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+||||
T Consensus 220 g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~ri 298 (563)
T PRK13529 220 GEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRI 298 (563)
T ss_pred hHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCC---------CCHHH
Q 010939 241 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---------KELVD 311 (497)
Q Consensus 241 v~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~---------~~L~e 311 (497)
||+|||+||+|||++|+++|++ +|+|+|||++|||+||++|||+++|.+ |+++|++||++.++. .+|+|
T Consensus 299 v~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e 376 (563)
T PRK13529 299 VFLGAGSAGCGIADQIVAAMVR-EGLSEEEARKRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLE 376 (563)
T ss_pred EEECCCHHHHHHHHHHHHHHHH-cCCChhHhcCeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHH
Confidence 9999999999999999999997 599999999999999999999999965 999999999986543 69999
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeee
Q 010939 312 AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 391 (497)
Q Consensus 312 ~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~ 391 (497)
+|+++|||||||+|+++|+|||||||+|+++|+|||||||||||++|||+|||||+||+|||||||||||+||+|+|+++
T Consensus 377 ~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~ 456 (563)
T PRK13529 377 VVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTY 456 (563)
T ss_pred HHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHcCCC
Q 010939 392 VPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLA 471 (497)
Q Consensus 392 ~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~AVa~~A~~~GlA 471 (497)
+||||||+|||||||||+++++|++|||+||++||++||+++++++++++.|||+++++|+||.+||.||+++|+++|+|
T Consensus 457 ~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA 536 (563)
T PRK13529 457 PIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLA 536 (563)
T ss_pred ccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHhCCcccCCCCCC
Q 010939 472 TRLPPPKDLVKYAESCMYSPAYRTYR 497 (497)
Q Consensus 472 ~~~~~p~d~~~~i~~~mw~P~Y~~~~ 497 (497)
+. +.|+|+.+||+++||+|+|+|++
T Consensus 537 ~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 537 RE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred CC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 84 67789999999999999999873
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.2e-192 Score=1532.07 Aligned_cols=497 Identities=74% Similarity=1.198 Sum_probs=489.1
Q ss_pred ChhhhcccCCchhHHHHHHHHHHhhHHHHHHHhhcCcccccccccccchhHHHHHHhhhhcCCCcceecccCchhHHHHH
Q 010939 1 MLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVL 80 (497)
Q Consensus 1 ~~~~~~~~~~~l~k~~~L~~L~~~N~~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l 80 (497)
||.||++++++|+||+||++||+|||+||||++.+|++||||||||||||++|++||++||+|+|||||++|+|++++++
T Consensus 85 ~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l 164 (581)
T PLN03129 85 FMENLRALESPLAKYRALMDLQERNERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSML 164 (581)
T ss_pred HHHHHhccCCcHHHHHHHHHHHhhCcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCceEEEEecCceeeccCCCCCcccccchhhHHHHhhhcCCCCCceeeEEeccCCCccccccCcccccccccCcc
Q 010939 81 RNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAI 160 (497)
Q Consensus 81 ~n~~~~~v~viVVTDG~rILGLGDlG~~gm~I~~GKl~Ly~a~gGi~P~~~lPi~LDvgtnn~~Ll~Dp~YlG~r~~R~~ 160 (497)
+|||.++|++||||||||||||||||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++
T Consensus 165 ~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~ 244 (581)
T PLN03129 165 KNWPERDVQVIVVTDGERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLT 244 (581)
T ss_pred hcCCCcCceEEEEecCcceeeccccCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceE
Q 010939 161 GQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRF 240 (497)
Q Consensus 161 g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~ri 240 (497)
|++|++|+||||++|+.+|||+++||||||+++|||+||+|||+++|||||||||||+|+|||||||+|++|++|+||||
T Consensus 245 g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~ri 324 (581)
T PLN03129 245 GEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRI 324 (581)
T ss_pred hhhHHHhHHHHHHHHHHHhCCccEEehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcE
Q 010939 241 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTI 320 (497)
Q Consensus 241 v~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptv 320 (497)
||+|||+||+|||+||+++|++++|+|+|||++|||++|++|||+++|.+.|+++|++||++.++..+|+|+|+++||||
T Consensus 325 v~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptv 404 (581)
T PLN03129 325 LFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTV 404 (581)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCE
Confidence 99999999999999999999986699999999999999999999999975699999999998777889999999999999
Q ss_pred EEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeeeCCCCccccc
Q 010939 321 LIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAY 400 (497)
Q Consensus 321 LIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~ 400 (497)
|||+|+++|+|||||||+|++||+|||||||||||++|||+|||||+||+|||||||||||+||+|+||+++||||||+|
T Consensus 405 LIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~ 484 (581)
T PLN03129 405 LIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAY 484 (581)
T ss_pred EEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHcCCCCCCCCchhH
Q 010939 401 IFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDL 480 (497)
Q Consensus 401 iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~AVa~~A~~~GlA~~~~~p~d~ 480 (497)
+|||||||+++++|++|||+||++||++||++++++++..+.|||++++||+||.+||+||+++|+++|+|+..+.|+++
T Consensus 485 iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~ 564 (581)
T PLN03129 485 IFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDL 564 (581)
T ss_pred eccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCcccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876778999
Q ss_pred HHHHHhCCcccCCCCCC
Q 010939 481 VKYAESCMYSPAYRTYR 497 (497)
Q Consensus 481 ~~~i~~~mw~P~Y~~~~ 497 (497)
.+|++++||+|+|+|++
T Consensus 565 ~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 565 VEYAESCMYSPVYRPYR 581 (581)
T ss_pred HHHHHHcCcCCCCCCCC
Confidence 99999999999999974
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.3e-190 Score=1509.25 Aligned_cols=490 Identities=50% Similarity=0.869 Sum_probs=478.7
Q ss_pred ChhhhcccCCchhHHHHHHHHHHhhHHHHHHHhhcCcccccccccccchhHHHHHHhhhhcCCCcceecccCchhHHHHH
Q 010939 1 MLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVL 80 (497)
Q Consensus 1 ~~~~~~~~~~~l~k~~~L~~L~~~N~~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l 80 (497)
+|.||++++++|+||+||++||+|||+||||++.+|+|||||||||||||++|++||++||+|+|||+|++|+|+|+++|
T Consensus 62 ~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l 141 (559)
T PTZ00317 62 LWTQFNRIETPINKYQFLRNIHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREIL 141 (559)
T ss_pred HHHHHhhCCChHHHHHHHHHHhhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCceEEEEecCceeeccCCCCCcccccchhhHHHHhhhcCCCCCceeeEEeccCCCccccccCcccccccccCcc
Q 010939 81 RNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAI 160 (497)
Q Consensus 81 ~n~~~~~v~viVVTDG~rILGLGDlG~~gm~I~~GKl~Ly~a~gGi~P~~~lPi~LDvgtnn~~Ll~Dp~YlG~r~~R~~ 160 (497)
+|||.++|++||||||||||||||||++|||||+||++|||+||||||++|||||||+|||||+||+||+|+||||+|++
T Consensus 142 ~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~ 221 (559)
T PTZ00317 142 KNWPYDNVDVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLD 221 (559)
T ss_pred hcCCccCceEEEEeccccccccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceE
Q 010939 161 GQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRF 240 (497)
Q Consensus 161 g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~ri 240 (497)
|++||+|+||||++|+++| |+++||||||+++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||
T Consensus 222 g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~ri 300 (559)
T PTZ00317 222 DDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRI 300 (559)
T ss_pred hhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc--CC---CCCHHHHHhc
Q 010939 241 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EP---VKELVDAVNA 315 (497)
Q Consensus 241 v~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--~~---~~~L~e~v~~ 315 (497)
||+|||+||+|||+||+++|++ +|+|+|||++|||++|++|||+++|.+.|+++|++||++. ++ ..+|+|+|+.
T Consensus 301 v~~GAGsAgiGia~ll~~~m~~-~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~ 379 (559)
T PTZ00317 301 VFFGAGSAAIGVANNIADLAAE-YGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRF 379 (559)
T ss_pred EEECCCHHHHHHHHHHHHHHHH-cCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhc
Confidence 9999999999999999999987 6999999999999999999999999766999999999974 33 5799999999
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeeeCCCC
Q 010939 316 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQ 395 (497)
Q Consensus 316 vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~~p~Q 395 (497)
+|||||||+|+++|+|||||||+|+++|+|||||||||||++|||+|||||+||+|||||||||||+||+|+||+++|||
T Consensus 380 ~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q 459 (559)
T PTZ00317 380 VKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQ 459 (559)
T ss_pred cCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHcCCCCC--
Q 010939 396 ANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATR-- 473 (497)
Q Consensus 396 ~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~AVa~~A~~~GlA~~-- 473 (497)
|||+|||||||||+++++|++|||+||++||++||++++++++..+.|||+++++|+||.+||.||+++|+++|+|+.
T Consensus 460 ~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~ 539 (559)
T PTZ00317 460 GNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKD 539 (559)
T ss_pred CcceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCC-chhHHHHHHhCCcccC
Q 010939 474 LPP-PKDLVKYAESCMYSPA 492 (497)
Q Consensus 474 ~~~-p~d~~~~i~~~mw~P~ 492 (497)
.|. ++|+.+||+++||+|.
T Consensus 540 ~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 540 LPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred CCCCHHHHHHHHHhcCcCCC
Confidence 343 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.6e-120 Score=940.48 Aligned_cols=414 Identities=37% Similarity=0.570 Sum_probs=374.8
Q ss_pred hhhhcccCC-chhHHHHHHHHHHhhHHHHHHHhhcCcccccccccccchhHHHHHHhhhhcCCCcceecccCchhHHHHH
Q 010939 2 LHNIRQYQV-PLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVL 80 (497)
Q Consensus 2 ~~~~~~~~~-~l~k~~~L~~L~~~N~~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l 80 (497)
|.++..+.+ +|++|.|| ++|+.+||.++..|..|+|||+||||||++|++||+.++.++
T Consensus 11 ~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~---------------- 70 (432)
T COG0281 11 YEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY---------------- 70 (432)
T ss_pred HHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh----------------
Confidence 456666666 99999999 899999999999999999999999999999999998888775
Q ss_pred hhCCCCCceEEEEecCceeeccCCCC-CcccccchhhHHHHhhhcCCCCCceeeEEeccCCCccccccCcccccccccCc
Q 010939 81 RNWPEKNIQVIVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRA 159 (497)
Q Consensus 81 ~n~~~~~v~viVVTDG~rILGLGDlG-~~gm~I~~GKl~Ly~a~gGi~P~~~lPi~LDvgtnn~~Ll~Dp~YlG~r~~R~ 159 (497)
.|+.++++|||||||||||||||+| ..||||||||++|||+||||| +||||||+||+|+
T Consensus 71 -~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e---------------- 130 (432)
T COG0281 71 -SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE---------------- 130 (432)
T ss_pred -hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH----------------
Confidence 4677788999999999999999999 568999999999999999999 9999999998765
Q ss_pred chhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHH--HcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCC
Q 010939 160 IGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEK--YGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLAD 237 (497)
Q Consensus 160 ~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~r--yr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d 237 (497)
+++||++++++||. |++||++.|.||.++++ ||.+||||||||||||+|+||||+||||++|++|+|
T Consensus 131 --------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d 199 (432)
T COG0281 131 --------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKD 199 (432)
T ss_pred --------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccc
Confidence 79999999999988 88888888888887665 557999999999999999999999999999999999
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCcc-CCchhchhhhc-ccCCCCCHHHHHhc
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAH-EHEPVKELVDAVNA 315 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~-~l~~~k~~~a~-~~~~~~~L~e~v~~ 315 (497)
+||||+|||+||+||+++|..+ |++ ++|||+|||+|+|+++|.+ .++++|..+|. +.....+ .+++
T Consensus 200 ~kiv~~GAGAAgiaia~~l~~~-----g~~----~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~-- 267 (432)
T COG0281 200 QKIVINGAGAAGIAIADLLVAA-----GVK----EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLAL-- 267 (432)
T ss_pred eEEEEeCCcHHHHHHHHHHHHh-----CCC----cccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccc--
Confidence 9999999999999999999987 443 2899999999999999965 36778888885 4444442 3455
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeeeCCCC
Q 010939 316 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQ 395 (497)
Q Consensus 316 vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~~p~Q 395 (497)
.+||||||+|++ |+||+|+|++|+ ++|||||||||| ||++||||.+|++|++|+||| |+++|||
T Consensus 268 ~~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTG----------rsd~PnQ 331 (432)
T COG0281 268 AGADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATG----------RSDYPNQ 331 (432)
T ss_pred cCCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeC----------CCCCccc
Confidence 559999999999 899999999998 559999999999 999999999999999999999 5677789
Q ss_pred ccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHcCCCCCCC
Q 010939 396 ANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLP 475 (497)
Q Consensus 396 ~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~AVa~~A~~~GlA~~~~ 475 (497)
+||+|+|||||+|++++||++|||+|+++||+|||++++++.. ++.|+|++++.|.+|. ||.||+++|.++|+|+..+
T Consensus 332 vNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA~~~GvA~~~~ 409 (432)
T COG0281 332 VNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAAMEEGVARRPI 409 (432)
T ss_pred ccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHHHHcCCccCCC
Confidence 9999999999999999999999999999999999999987666 7999999999999999 9999999999999998765
Q ss_pred Cc-hhHHHHHHhCCcccCCCCC
Q 010939 476 PP-KDLVKYAESCMYSPAYRTY 496 (497)
Q Consensus 476 ~p-~d~~~~i~~~mw~P~Y~~~ 496 (497)
.+ +++.++++..+|.|.|.++
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
T COG0281 410 DDEEAYEQALEARLWKPEYRMK 431 (432)
T ss_pred CCHHHHHHHHHHHhcCcccccC
Confidence 54 4699999999999999875
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1.1e-112 Score=942.73 Aligned_cols=370 Identities=31% Similarity=0.533 Sum_probs=337.3
Q ss_pred ccccccccccchhHHHHHHhhhhcCCCcceecccCchhHHHHHhhCCCCCceEEEEecCceeeccCCCCCcc-cccchhh
Q 010939 38 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 116 (497)
Q Consensus 38 ~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~g-m~I~~GK 116 (497)
.+.|+++|||||+++|++ |+++|+++| .|+.+++.++|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 445999999999999999 799999886 4677778899999999999999999996 9999999
Q ss_pred HHHHhhhcCCCCCceeeEEeccCCCccccccCcccccccccCcchhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHH
Q 010939 117 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAF 196 (497)
Q Consensus 117 l~Ly~a~gGi~P~~~lPi~LDvgtnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af 196 (497)
++|||+||||| + +|+|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid---~----~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID---V----FDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC---c----cccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 5 5555555 566 7888 999999999977 999999999999
Q ss_pred HHHHHHcC--CCCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 010939 197 DLLEKYGT--THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 274 (497)
Q Consensus 197 ~iL~ryr~--~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~ 274 (497)
+||+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|+++| |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 699999999999999999999999999999999999999999999999999976 499854 9
Q ss_pred EEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCC
Q 010939 275 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 354 (497)
Q Consensus 275 i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNP 354 (497)
||++|++|||+++|.+.|+++|++||++. +..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 45799999999 899999998 8999999999998 69999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEecCCCCCccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCC
Q 010939 355 TSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 434 (497)
Q Consensus 355 t~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~ 434 (497)
| |||+||||++ |+|++||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++++
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 9 8999999987 9999999997 9999999999999999999999999999999999999999999999
Q ss_pred ccC--------------CCCCCccCCCCCcchhhHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 010939 435 QEN--------------FDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAES 486 (497)
Q Consensus 435 ~~~--------------~~~~~l~P~~~~ir~vs~~VA~AVa~~A~~~GlA~~~~~p~d~~~~i~~ 486 (497)
+++ +...+|+|+..+ ++||.+||.||+++|+++|+|+. +. +++.+|+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 358 EEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred cccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 875 334556696665 79999999999999999999985 32 566666543
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=1.1e-111 Score=939.38 Aligned_cols=369 Identities=29% Similarity=0.493 Sum_probs=338.6
Q ss_pred ccccccccccchhHHHHHHhhhhcCCCcceecccCchhHHHHHhhCCCCCceEEEEecCceeeccCCCCCcc-cccchhh
Q 010939 38 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 116 (497)
Q Consensus 38 ~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~g-m~I~~GK 116 (497)
.+.|+++|||||+++|++ |+++|+++| .|+.+++.++|||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 455999999999999999 788998888 4788889999999999999999999996 9999999
Q ss_pred HHHHhhhcCCCCCceeeEEeccCCCccccccCcccccccccCcchhhhHHHHHHHHHHHHHhhCCC-cceeeecCCCCcH
Q 010939 117 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER-ILIQFEDFANHNA 195 (497)
Q Consensus 117 l~Ly~a~gGi~P~~~lPi~LDvgtnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~-~lI~~EDf~~~~a 195 (497)
++|||+||||| ++|||+| |+ || ||||++|+.+| |+ ..||||||++|||
T Consensus 101 ~~l~~~~~gi~---~~~i~~~----~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDIELD----ES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---ccccccC----CC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 6665555 54 44 88888888888 77 7899999999999
Q ss_pred HHHHHHHcCC--CCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 010939 196 FDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 273 (497)
Q Consensus 196 f~iL~ryr~~--~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~ 273 (497)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 89999999999999999999999999999999999999999999999999987 39874 8
Q ss_pred eEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010939 274 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 274 ~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
||||||++|||+++|.+.|+++|++||++. +..+|+|+|++ ||||||+|+ +|+||+|||++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999756999999999986 45799999999 999999999 8999999999998 9999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccC
Q 010939 354 PTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 433 (497)
Q Consensus 354 Pt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v 433 (497)
|| |||+|||||+||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 360 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELA 360 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcc
Confidence 99 99999999999999 999998 899999999999999999999999999999999999999999999
Q ss_pred CccC--------------CCCCCccCCCCCcchhhHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 010939 434 TQEN--------------FDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAES 486 (497)
Q Consensus 434 ~~~~--------------~~~~~l~P~~~~ir~vs~~VA~AVa~~A~~~GlA~~~~~p~d~~~~i~~ 486 (497)
++++ +.+++|+|+..+ ++||..||.||+++|+++|+|+. + .+++.+|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 361 REEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred cccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 9873 455679996666 89999999999999999999985 3 3466666654
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=7.3e-111 Score=928.74 Aligned_cols=359 Identities=30% Similarity=0.505 Sum_probs=334.5
Q ss_pred ccccccccccchhHHHHHHhhhhcCCCcceecccCchhHHHHHhhCCCCCceEEEEecCceeeccCCCCCc-ccccchhh
Q 010939 38 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCH-GMGIPVGK 116 (497)
Q Consensus 38 ~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~-gm~I~~GK 116 (497)
.+.|+++|||||+++|++ |+++|+++| + |+.+++.++|||||||||||||+|++ ||||||||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~-------------~t~~~n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-K-------------YTARGNLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-c-------------cccCCcEEEEEccchhhccccccccccCccHHHHH
Confidence 455999999999999996 799999999 4 45566679999999999999999999 89999999
Q ss_pred HHHHhhhcCCCCCceeeEEeccCCCccccccCcccccccccCcchhhhHHHHHHHHHHHHHhhCCCc-ceeeecCCCCcH
Q 010939 117 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI-LIQFEDFANHNA 195 (497)
Q Consensus 117 l~Ly~a~gGi~P~~~lPi~LDvgtnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~-lI~~EDf~~~~a 195 (497)
++|||+||||| ++|||+ ||++ +||||++++.+| |+. .||||||++|||
T Consensus 93 ~~l~~~~~gid---~~~i~~----~~~d-----------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VFDIEV----DEED-----------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---cccccc----CCCC-----------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 555555 5553 799999999999 764 999999999999
Q ss_pred HHHHHHHcCC--CCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 010939 196 FDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 273 (497)
Q Consensus 196 f~iL~ryr~~--~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~ 273 (497)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 89999999999999999999999999999999999999999999999999986 3987 68
Q ss_pred eEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010939 274 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 274 ~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
|||++|++|||+++|.++|+++|++||++ .+..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999965699999999998 445799999999 999999999 8999999999998 7999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccC
Q 010939 354 PTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 433 (497)
Q Consensus 354 Pt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v 433 (497)
|| |||+||||++||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 99 89999999999999 999998 899999999999999999999999999999999999999999999
Q ss_pred Ccc--------------CCCCCCccCCCCCcchhhHHHHHHHHHHHHHcCCCCCC
Q 010939 434 TQE--------------NFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRL 474 (497)
Q Consensus 434 ~~~--------------~~~~~~l~P~~~~ir~vs~~VA~AVa~~A~~~GlA~~~ 474 (497)
+++ ++.+++|+|+.++ ++|+..||.||+++|+++|+|+..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~~ 406 (752)
T PRK07232 353 REEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATRP 406 (752)
T ss_pred ccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccCC
Confidence 886 6888999999888 679999999999999999999853
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=2.9e-100 Score=762.52 Aligned_cols=277 Identities=61% Similarity=1.007 Sum_probs=270.1
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 010939 213 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 292 (497)
Q Consensus 213 iQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l 292 (497)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 699999999999999999999999965 9
Q ss_pred chhchhhhcccC--CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccc
Q 010939 293 QHFKKPWAHEHE--PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ 370 (497)
Q Consensus 293 ~~~k~~~a~~~~--~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~ 370 (497)
+++|++||++.+ +..+|+|+|+.+|||+|||+|+++|+||+|+||+|++||+|||||||||||+++||+|||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCCc
Q 010939 371 GRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNI 450 (497)
Q Consensus 371 Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~i 450 (497)
|||||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..+.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccc
Q 010939 451 RKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSP 491 (497)
Q Consensus 451 r~vs~~VA~AVa~~A~~~GlA~~~~~p~d~~~~i~~~mw~P 491 (497)
|+||.+||.||+++|+++|+|+..++++|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987666689999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=8.6e-97 Score=729.49 Aligned_cols=252 Identities=56% Similarity=0.931 Sum_probs=229.8
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 010939 213 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 292 (497)
Q Consensus 213 iQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l 292 (497)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|+||||+||||+|++|||+++| ++|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r-~~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDR-EDL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTT-SSH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccC-ccC
Confidence 799999999999999999999999999999999999999999999999985 999999999999999999999999 469
Q ss_pred chhchhhhcccCCC---CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc
Q 010939 293 QHFKKPWAHEHEPV---KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 369 (497)
Q Consensus 293 ~~~k~~~a~~~~~~---~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t 369 (497)
+++|++|||+.++. .||+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCC
Q 010939 370 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 449 (497)
Q Consensus 370 ~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 449 (497)
+|+|||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..+.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHH
Q 010939 450 IRKISAHIAAEVAAKAY 466 (497)
Q Consensus 450 ir~vs~~VA~AVa~~A~ 466 (497)
+|+||.+||.||+++|+
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=9.2e-94 Score=707.19 Aligned_cols=251 Identities=50% Similarity=0.780 Sum_probs=245.1
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 010939 213 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 292 (497)
Q Consensus 213 iQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l 292 (497)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||||+|||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999997 599999999999999999999999964 8
Q ss_pred chhchh---hhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc
Q 010939 293 QHFKKP---WAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 369 (497)
Q Consensus 293 ~~~k~~---~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t 369 (497)
+++|++ |+++.++..+|+|+|+.+|||||||+|+++|+||||+||+|++||+|||||||||||+++||+|||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88877777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCC
Q 010939 370 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 449 (497)
Q Consensus 370 ~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 449 (497)
+|||||||||||+||+|+|++++|+||||+|+|||||||+++++|++|||+||++||++||++++++++.++.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHH
Q 010939 450 IRKISAHIAAEVAAKA 465 (497)
Q Consensus 450 ir~vs~~VA~AVa~~A 465 (497)
||+||.+||.||+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=4.5e-83 Score=603.03 Aligned_cols=182 Identities=63% Similarity=1.184 Sum_probs=164.2
Q ss_pred HHhhHHHHHHHhhcCcccccccccccchhHHHHHHhhhhcCCCcceecccCchhHHHHHhhCCCCCceEEEEecCceeec
Q 010939 22 QERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILG 101 (497)
Q Consensus 22 ~~~N~~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILG 101 (497)
|++||+|||+++.+|+||+|||+||||||+||++||++|++|+|+|+|+.|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccchhhHHHHhhhcCCCCCceeeEEeccCCCccccccCcccccccccCcchhhhHHHHHHHHHHHHHhhCC
Q 010939 102 LGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGE 181 (497)
Q Consensus 102 LGDlG~~gm~I~~GKl~Ly~a~gGi~P~~~lPi~LDvgtnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp 181 (497)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||||++|++|++|+||||+|++++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeecCCCCcHHHHHHHHc
Q 010939 182 RILIQFEDFANHNAFDLLEKYG 203 (497)
Q Consensus 182 ~~lI~~EDf~~~~af~iL~ryr 203 (497)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=6e-59 Score=453.14 Aligned_cols=223 Identities=35% Similarity=0.509 Sum_probs=208.1
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 010939 213 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 292 (497)
Q Consensus 213 iQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l 292 (497)
|||||+|++||+++|+|..|++++++|+||+|||+||.|||++|.. .|++ +++||++||+|+++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 3886 679999999999999987669
Q ss_pred chhchhhhccc--CCC-CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc
Q 010939 293 QHFKKPWAHEH--EPV-KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 369 (497)
Q Consensus 293 ~~~k~~~a~~~--~~~-~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t 369 (497)
.++|++|+++. ... .+|.|++++ ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 223 379899987 999999999 7899999999997 899999999999 89999999999
Q ss_pred cCcEEEecCCCCCccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCC
Q 010939 370 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 449 (497)
Q Consensus 370 ~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 449 (497)
|..||||| +++.|+|+||+|||||||||++++++++|||+||++||++||++++++++..+.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHH
Q 010939 450 IRKISAHIAAEVAAKA 465 (497)
Q Consensus 450 ir~vs~~VA~AVa~~A 465 (497)
|+||..||.||+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.91 E-value=1.8e-08 Score=84.16 Aligned_cols=86 Identities=38% Similarity=0.499 Sum_probs=76.0
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 010939 215 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 294 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~ 294 (497)
+||.++++++..+.+..+.+++..|++++|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999999763 3 267999988
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecC
Q 010939 295 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 295 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLS 352 (497)
|+||++++.++.|+++ .|+..+++|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999888 455557999999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.84 E-value=0.00041 Score=74.62 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=104.1
Q ss_pred CcchhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHHH---------------------HHHHc-------CCCCce
Q 010939 158 RAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDL---------------------LEKYG-------TTHLVF 209 (497)
Q Consensus 158 R~~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~i---------------------L~ryr-------~~~~~F 209 (497)
..+-++|+..+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 346678888887776 344565444 3333222222 13443 379999
Q ss_pred e----------cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEc
Q 010939 210 N----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVD 279 (497)
Q Consensus 210 n----------DDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD 279 (497)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... | -+++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----G-------a~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----G-------ARVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEc
Confidence 8 7778998777766654 346678999999999999999999888642 6 2688888
Q ss_pred cCCcccCCCccCCchhchhhhcc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010939 280 SKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 280 ~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
++- .| ...|.. .-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 243 ~dp----~r--------a~~A~~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VDP----IC--------ALQAAMDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CCc----hh--------hHHHHhcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 641 11 111111 1112467888875 99999988777789989998885 334555555444
No 16
>PLN02477 glutamate dehydrogenase
Probab=97.54 E-value=0.0026 Score=68.25 Aligned_cols=186 Identities=22% Similarity=0.223 Sum_probs=129.7
Q ss_pred cchhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHH--HHHHHHcC----CCCce----------ecCccchhHHHHH
Q 010939 159 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAF--DLLEKYGT----THLVF----------NDDIQGTASVVLA 222 (497)
Q Consensus 159 ~~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af--~iL~ryr~----~~~~F----------nDDiQGTa~V~lA 222 (497)
++..|-..+...|++++.+--||..=|-=+|++..-.- -+.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 45678888999999999999999665666777664221 15677764 11111 2334558877788
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEccCCcccCCCccCCchhch-hhh
Q 010939 223 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKK-PWA 300 (497)
Q Consensus 223 gll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~-~vD~~GLi~~~r~~~l~~~k~-~~a 300 (497)
++-.+++..|.+|++.||+|.|-|..|.+.|++|.+. |. +++ +.|++|-|++.. .|+..+. .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN--GLDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC--CCCHHHHHHHH
Confidence 8888999999999999999999999999999988653 63 566 899999999875 4553322 221
Q ss_pred cccCCC--------CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHhc
Q 010939 301 HEHEPV--------KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 367 (497)
Q Consensus 301 ~~~~~~--------~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN-Pt~~~E~~peda~~ 367 (497)
+....+ -+-.|.+. .+.||||=+.. ++.+|++.+..+ +-.||.--+| |+ -+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 111000 12233333 48999996654 579999999986 7899999999 66 344 445554
No 17
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.47 E-value=0.0006 Score=72.78 Aligned_cols=121 Identities=24% Similarity=0.381 Sum_probs=85.4
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 214 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 214 QGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
.+.-+|+.+++--|.+..+. +.+.+++|+|+|..|..++..|.. .|. .+++++|+.. .+.
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~ra---- 217 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ERA---- 217 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HHH----
Confidence 66667777887667776654 889999999999999999888864 264 5799888742 111
Q ss_pred hhchhhhcc----cCCCCCHHHHHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCc-eEEecCCCCCCCCCCH
Q 010939 294 HFKKPWAHE----HEPVKELVDAVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKP-IIFSLSNPTSQSECTA 362 (497)
Q Consensus 294 ~~k~~~a~~----~~~~~~L~e~v~~vkptvLIG~S~~-~g~Fteevi~~Ma~~~~rP-IIFaLSNPt~~~E~~p 362 (497)
..+++. .-...++.+++.. .|++|-+++. ..++++++++.+.....+| +|+-+++|. ++.|
T Consensus 218 ---~~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr---did~ 284 (417)
T TIGR01035 218 ---EDLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR---DVDP 284 (417)
T ss_pred ---HHHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC---CCCh
Confidence 122221 1122467888876 9999998754 3578999999876433356 889999995 4554
No 18
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.36 E-value=0.014 Score=63.38 Aligned_cols=168 Identities=15% Similarity=0.119 Sum_probs=114.8
Q ss_pred cchhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHH--HHHHHHcC---CC-Cce----------ecCccchhHHHHH
Q 010939 159 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAF--DLLEKYGT---TH-LVF----------NDDIQGTASVVLA 222 (497)
Q Consensus 159 ~~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af--~iL~ryr~---~~-~~F----------nDDiQGTa~V~lA 222 (497)
.+-.|...+.-.|+..+.+.+||+.-|--+|++..-.- -+.+.|+. .. -++ .+--+.||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 45677889999999999999999998989998764322 26777753 11 222 3344568877888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc
Q 010939 223 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302 (497)
Q Consensus 223 gll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~ 302 (497)
++-.+++..|.+|+++||+|.|.|..|...|+.|.+. |. +=+-+-|++|-|++.. .++..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999999763 63 3345699999998764 466655443221
Q ss_pred cCC--CCCHHHHH-------------hccCCcEEEEccCCCCCCCHHHHHHHH
Q 010939 303 HEP--VKELVDAV-------------NAIKPTILIGTSGQGRTFTKEVVEAMA 340 (497)
Q Consensus 303 ~~~--~~~L~e~v-------------~~vkptvLIG~S~~~g~Fteevi~~Ma 340 (497)
... -+++.+.. -.++.|+||=+.. .+.+|++-++.+.
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~ 332 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSAT-QNELNGDDARQLV 332 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeeccc-ccccCHHHHHHHH
Confidence 000 01122111 1135666664444 3567777666663
No 19
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.31 E-value=0.003 Score=62.15 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 216 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 216 Ta~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-+++. . ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 45556677788889999999999999999999999999999763 53 678899999988886 3 4432
Q ss_pred -chhhhcccCCCCCH-------HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHh
Q 010939 296 -KKPWAHEHEPVKEL-------VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAY 366 (497)
Q Consensus 296 -k~~~a~~~~~~~~L-------~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN-Pt~~~E~~peda~ 366 (497)
...++++....... .+.+-.++.||||=++. .+..|++..+.+ .-++|..-+| |++ + .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t-~--~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTT-D--EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCC-H--HHHHHH
Confidence 22222221111100 13344568999997776 469999999988 5889998888 874 2 456666
Q ss_pred c
Q 010939 367 T 367 (497)
Q Consensus 367 ~ 367 (497)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 5
No 20
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.27 E-value=0.0039 Score=67.03 Aligned_cols=129 Identities=18% Similarity=0.242 Sum_probs=94.4
Q ss_pred CCCcee----------cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 010939 205 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 274 (497)
Q Consensus 205 ~~~~Fn----------DDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~ 274 (497)
.+|+|+ |...||+--++-+++. .++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 788885 6779999988877765 56778999999999999999999987754 362 5
Q ss_pred EEEEccCCcccCCCccCCchhchhhhcccC-CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010939 275 IWLVDSKGLIVSSRLESLQHFKKPWAHEHE-PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 275 i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~-~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
++++|.+ +.+...|+... ...++.|+++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d------------~~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD------------PICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC------------hhhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777763 22223333211 11346788875 89999999888889999888885 5567766777
Q ss_pred CCCCCCCCHHHHhc
Q 010939 354 PTSQSECTAEEAYT 367 (497)
Q Consensus 354 Pt~~~E~~peda~~ 367 (497)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 64 7888887764
No 21
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.27 E-value=0.015 Score=63.14 Aligned_cols=189 Identities=17% Similarity=0.154 Sum_probs=131.4
Q ss_pred cchhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHH--HHHHHHcCC---C-------Cce----ecCccchhHHHHH
Q 010939 159 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAF--DLLEKYGTT---H-------LVF----NDDIQGTASVVLA 222 (497)
Q Consensus 159 ~~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af--~iL~ryr~~---~-------~~F----nDDiQGTa~V~lA 222 (497)
.+..|-..|...|+.++.+.+||..=|--+|++..-.- -+.++|+.- . |+- .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 45568888999999999999999888888888743222 166777631 1 211 2334567777788
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ccCCcccCCCccCCchh-----c
Q 010939 223 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHF-----K 296 (497)
Q Consensus 223 gll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~v-D~~GLi~~~r~~~l~~~-----k 296 (497)
++..+++..+.+|++.||+|.|-|..|...|++|.+ .|. +++-+ |++|-|++.. .|+.. |
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 888899989999999999999999999999999964 363 45555 9999999875 35433 1
Q ss_pred h-------hhhcc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHhc
Q 010939 297 K-------PWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 367 (497)
Q Consensus 297 ~-------~~a~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN-Pt~~~E~~peda~~ 367 (497)
. .|... ....-+- +.+-.++.||||=+.. .+..|++-...+-. ++..||.=-+| |+ -+| +++++.
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 11110 0000111 2233567999997665 57999999998853 46789999999 76 344 445554
No 22
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.17 E-value=0.032 Score=60.70 Aligned_cols=189 Identities=17% Similarity=0.200 Sum_probs=131.5
Q ss_pred cchhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHH---HHHHHcC---CC-Cce----------ecCccchhHHHH
Q 010939 159 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT---TH-LVF----------NDDIQGTASVVL 221 (497)
Q Consensus 159 ~~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~---iL~ryr~---~~-~~F----------nDDiQGTa~V~l 221 (497)
.+..|-..|...||..+.+..||+.-|--.|++. +..+ +.+.|+. +. .|+ .+--.-||-=+.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4566778999999999999999999999999985 3333 5566652 22 121 112234887778
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEccCCcccCCCccCCchhchhhh
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKKPWA 300 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~-~vD~~GLi~~~r~~~l~~~k~~~a 300 (497)
.++-.+++..+.+|++.|++|-|.|..|...|+.|.+. | -+++ +.|++|-|++.. .++..+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----G-------akVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----G-------AKVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88889999999999999999999999999999999763 6 3455 999999999875 4655443221
Q ss_pred cc--cCCCCCHHH--------------HHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHH
Q 010939 301 HE--HEPVKELVD--------------AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAE 363 (497)
Q Consensus 301 ~~--~~~~~~L~e--------------~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN-Pt~~~E~~pe 363 (497)
.+ ...-++|.+ .+=.++.|||+=+..+ +.+|++-.+.+-+ +...+|.=-+| |++ +| ++
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~-n~I~~~~a~~l~~-~~ak~V~EgAN~p~t-~e--A~ 362 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQ-NEINLEDAKLLIK-NGCKLVAEGANMPTT-IE--AT 362 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEecccc-ccCCHHHHHHHHH-cCCeEEEecCCCCCC-HH--HH
Confidence 10 000011111 1113679999987775 6999999998853 35668888888 763 22 44
Q ss_pred HHhc
Q 010939 364 EAYT 367 (497)
Q Consensus 364 da~~ 367 (497)
+.++
T Consensus 363 ~~L~ 366 (454)
T PTZ00079 363 HLFK 366 (454)
T ss_pred HHHH
Confidence 5544
No 23
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.15 E-value=0.0018 Score=69.26 Aligned_cols=121 Identities=26% Similarity=0.406 Sum_probs=79.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 214 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 214 QGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
.+..+|+.+|+--|.+..+ ++.+.+++|+|+|..|..++..+.. .|. ++++++|+.. .| ..
T Consensus 160 ~~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~r---a~ 220 (423)
T PRK00045 160 AGAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----ER---AE 220 (423)
T ss_pred CCCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----HH---HH
Confidence 3455666666655554444 6888999999999999999888853 364 6799888751 22 11
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHccC--CCceEEecCCCC
Q 010939 294 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLN--EKPIIFSLSNPT 355 (497)
Q Consensus 294 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Fteevi~~Ma~~~--~rPIIFaLSNPt 355 (497)
.....+........++.++++. +|++|-+++.+ .++++++++.+.+.. ...+|+=||+|.
T Consensus 221 ~la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 221 ELAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 1111111011112456777765 89999987654 478999999975322 345888999995
No 24
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.15 E-value=0.0029 Score=64.94 Aligned_cols=131 Identities=24% Similarity=0.380 Sum_probs=84.5
Q ss_pred cHHHHHHHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 010939 194 NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 273 (497)
Q Consensus 194 ~af~iL~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~ 273 (497)
+|+++=++.|.+.-+. .|-.+|+.+++-.|.+..|. +.+.||+|+|+|..|..++..+... |. +
T Consensus 140 ~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g~------~ 203 (311)
T cd05213 140 KAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----GV------A 203 (311)
T ss_pred HHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----CC------C
Confidence 4555555555543333 34456666666666666655 8899999999999999988888642 42 6
Q ss_pred eEEEEccCCcccCCCccCCchhchhhhcc----cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccC--CCce
Q 010939 274 KIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPI 347 (497)
Q Consensus 274 ~i~~vD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~--~rPI 347 (497)
+++++|+. ..| ...+|+. .....++.++++. +|++|-+++.+.. +++++.+.+.. ..-+
T Consensus 204 ~V~v~~r~----~~r-------a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~ 268 (311)
T cd05213 204 EITIANRT----YER-------AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRL 268 (311)
T ss_pred EEEEEeCC----HHH-------HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeE
Confidence 79999874 121 1122322 1112457788876 8999998887644 66666654322 2347
Q ss_pred EEecCCCC
Q 010939 348 IFSLSNPT 355 (497)
Q Consensus 348 IFaLSNPt 355 (497)
|+=||||-
T Consensus 269 viDlavPr 276 (311)
T cd05213 269 IVDLAVPR 276 (311)
T ss_pred EEEeCCCC
Confidence 77899986
No 25
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.14 E-value=0.0066 Score=65.15 Aligned_cols=127 Identities=19% Similarity=0.216 Sum_probs=88.8
Q ss_pred CCCcee----------cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 010939 205 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 274 (497)
Q Consensus 205 ~~~~Fn----------DDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~ 274 (497)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|.|..|.++|..+... | -+
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-----G-------a~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARGM-----G-------AR 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-----c-------CE
Confidence 789987 777999977776655 4567779999999999999999999887642 5 35
Q ss_pred EEEEccCCcccCCCccCCchhchhhhcc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010939 275 IWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 275 i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
++++|.+- .| ...|+. .-...++.|+++. .|++|-+++..++++++.+..|. +.-||.-.+-
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887642 11 111111 1112357788875 89999888777788888888885 5557776666
Q ss_pred CCCCCCCCHHHH
Q 010939 354 PTSQSECTAEEA 365 (497)
Q Consensus 354 Pt~~~E~~peda 365 (497)
.. .|++-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 65 56555544
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.14 E-value=0.0034 Score=64.10 Aligned_cols=139 Identities=18% Similarity=0.275 Sum_probs=93.3
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 010939 213 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 292 (497)
Q Consensus 213 iQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l 292 (497)
+..+-.++=.++.-+++..+.+|.+.+++|+|+|..|..+|+.+... |. +++++|++. .+ +
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~~---~ 187 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----AD---L 187 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----HH---H
Confidence 45556666667778888888899999999999999999999999652 62 688888751 11 1
Q ss_pred chhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCc
Q 010939 293 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGR 372 (497)
Q Consensus 293 ~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Gr 372 (497)
...+ .+....-...+|.+.++. .|++|=+. +.++++++.++.|. +.-+|+=+|... -++..+.|.+ -+-+
T Consensus 188 ~~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~ 257 (287)
T TIGR02853 188 ARIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIK 257 (287)
T ss_pred HHHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCE
Confidence 1100 000011122467788876 99999654 44588999998885 566788776532 5666755544 3457
Q ss_pred EEEecCCC
Q 010939 373 AIFASGSP 380 (497)
Q Consensus 373 ai~AsGsP 380 (497)
++.|-|-|
T Consensus 258 a~~~~glP 265 (287)
T TIGR02853 258 ALLAPGLP 265 (287)
T ss_pred EEEeCCCC
Confidence 88888866
No 27
>PLN02494 adenosylhomocysteinase
Probab=97.02 E-value=0.0085 Score=65.43 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=95.2
Q ss_pred CCCcee----------cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 010939 205 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 274 (497)
Q Consensus 205 ~~~~Fn----------DDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~ 274 (497)
.+|++| |...||+--++-|++. .++..+...+++|+|.|..|.++|..+.. .|. +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~r---~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLMR---ATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHHH---hcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 788886 5578999888888874 57777999999999999999999999853 263 5
Q ss_pred EEEEccCCcccCCCccCCchhchhhhcc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010939 275 IWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 275 i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
++++|++.. +...|.. .-...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.
T Consensus 280 VIV~e~dp~------------r~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI------------CALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch------------hhHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 887876421 1111111 0011358888876 89999877777788999999995 6678888888
Q ss_pred CCCCCCCCHHHHhcc
Q 010939 354 PTSQSECTAEEAYTW 368 (497)
Q Consensus 354 Pt~~~E~~peda~~~ 368 (497)
+. .|+.-+...++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 76 78877766554
No 28
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.00 E-value=0.0061 Score=63.98 Aligned_cols=113 Identities=20% Similarity=0.335 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 010939 216 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 294 (497)
Q Consensus 216 Ta~V~lAgll~Al~~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~ 294 (497)
|+++...++--|.+..|.+|++.++++.|| |+.|--++++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888888899999999999999999999 89999999998642 243 679988874 112 222
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEEccCCC-CC-CCHHHHHHHHccCCCc-eEEecCCCCC
Q 010939 295 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-RT-FTKEVVEAMASLNEKP-IIFSLSNPTS 356 (497)
Q Consensus 295 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~-g~-Fteevi~~Ma~~~~rP-IIFaLSNPt~ 356 (497)
.+.++.. ....+|.+++.. +|+++=+++.+ .. ++++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 2223321 223468888876 99999877763 32 677655 355 4556898863
No 29
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.99 E-value=0.0065 Score=57.64 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhch
Q 010939 219 VVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK 297 (497)
Q Consensus 219 V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~ 297 (497)
++.|++- .++-...+|++.|++++|+|. .|..+|+.|.. .| .++++++++
T Consensus 27 ~~~a~v~-l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g-------~~V~v~~r~---------------- 77 (168)
T cd01080 27 TPAGILE-LLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RN-------ATVTVCHSK---------------- 77 (168)
T ss_pred hHHHHHH-HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CC-------CEEEEEECC----------------
Confidence 4444444 444445689999999999997 69989988865 25 258888864
Q ss_pred hhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010939 298 PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 298 ~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
..+|.+.++. .|++|..++.+.+|+++.++ +.-+|+=|+.|-
T Consensus 78 --------~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 --------TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred --------chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357778887 99999999988899999764 346788888876
No 30
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.82 E-value=0.0019 Score=58.44 Aligned_cols=101 Identities=23% Similarity=0.410 Sum_probs=67.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc---cCCCCCHH
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELV 310 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~---~~~~~~L~ 310 (497)
++++.|++++|||.+|-+++..|... |. ++|++++|. .+| .......|... .....++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~~ 70 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDLE 70 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGHC
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHHH
Confidence 79999999999999999998888653 65 789999974 222 22222233110 11235677
Q ss_pred HHHhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCceEEecCCCCC
Q 010939 311 DAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPTS 356 (497)
Q Consensus 311 e~v~~vkptvLIG~S~~~-g~Fteevi~~Ma~~~~rPIIFaLSNPt~ 356 (497)
+.+.. .|++|-+++.+ -.++++.++...+. ..+||=||+|-.
T Consensus 71 ~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 71 EALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp HHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 77776 99999987765 37888888754211 249999999963
No 31
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.68 E-value=0.082 Score=57.55 Aligned_cols=189 Identities=14% Similarity=0.102 Sum_probs=131.8
Q ss_pred cchhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHH---HHHHHcC----CCCcee----------cCccchhHHHH
Q 010939 159 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT----THLVFN----------DDIQGTASVVL 221 (497)
Q Consensus 159 ~~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~---iL~ryr~----~~~~Fn----------DDiQGTa~V~l 221 (497)
.+..|-..+.-.|++.+.+-.||+.=|-=.|++. +..+ +++.|+. ...++. +--+.||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4566888899999999998889988888888874 3333 5677764 222221 12223888788
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhh-
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA- 300 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a- 300 (497)
.++-.+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|++.. .++..+..+.
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999999653 74 5577789999999864 4655442111
Q ss_pred --------------cccCCCC--CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHH
Q 010939 301 --------------HEHEPVK--ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAE 363 (497)
Q Consensus 301 --------------~~~~~~~--~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN-Pt~~~E~~pe 363 (497)
..-+..+ +-.+ +=.++.||||=+..+ +.+|++-++.+.+ +...||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl~-n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCATQ-NELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeecccc-ccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 0100100 1112 223679999977664 6999999999853 35788998998 652 33 44
Q ss_pred HHhc
Q 010939 364 EAYT 367 (497)
Q Consensus 364 da~~ 367 (497)
++++
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 32
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.67 E-value=0.016 Score=59.37 Aligned_cols=128 Identities=22% Similarity=0.306 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchh
Q 010939 219 VVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP 298 (497)
Q Consensus 219 V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~ 298 (497)
++-+++..+++..+.++.+.|++|+|+|.+|..++..+.. .| -+++++|++- . +..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~~---~---------~~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARKS---A---------HLA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECCH---H---------HHH
Confidence 3334566677778888999999999999999999888864 26 3788888861 1 111
Q ss_pred hhcc----cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccC-cE
Q 010939 299 WAHE----HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG-RA 373 (497)
Q Consensus 299 ~a~~----~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~G-ra 373 (497)
.++. .....+|.+.++. .|++|-++ +...+++++++.|. +.-+|+=++... -.|..+.|.+ .| ++
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~ 259 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKA 259 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEE
Confidence 1211 1122467788876 99999865 34678999999886 567777665533 2344444432 34 45
Q ss_pred EEecCCC
Q 010939 374 IFASGSP 380 (497)
Q Consensus 374 i~AsGsP 380 (497)
+.++|-|
T Consensus 260 ~~~~~lp 266 (296)
T PRK08306 260 LLAPGLP 266 (296)
T ss_pred EEECCCC
Confidence 5567754
No 33
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.60 E-value=0.012 Score=58.21 Aligned_cols=124 Identities=25% Similarity=0.273 Sum_probs=90.0
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 010939 213 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 292 (497)
Q Consensus 213 iQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l 292 (497)
-+-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-+++.. .+
T Consensus 7 ~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~--Gl 73 (227)
T cd01076 7 EEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD--GL 73 (227)
T ss_pred CccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CC
Confidence 34577777788888889889999999999999999999999998653 63 3355999999999875 35
Q ss_pred chhchh-hhcccCCC--------CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CC
Q 010939 293 QHFKKP-WAHEHEPV--------KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 355 (497)
Q Consensus 293 ~~~k~~-~a~~~~~~--------~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN-Pt 355 (497)
+..... +.+....+ -+-.+ +-..+.||||=++. +++.|++.+..+ +-++|.--+| |+
T Consensus 74 d~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a~-~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 74 DVPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAAL-ENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred CHHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecCc-cCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 433211 11111100 01222 33458899998774 579999999998 6899999999 65
No 34
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.56 E-value=0.0093 Score=64.13 Aligned_cols=196 Identities=24% Similarity=0.352 Sum_probs=123.6
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 214 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 214 QGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
.|--+|.-|++=-|.++.|. |++.+++|+|||..|..+|+.|.. .|+ ++|+++.|. ..|.
T Consensus 156 ~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~-----~g~------~~i~IaNRT----~erA---- 215 (414)
T COG0373 156 KGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAE-----KGV------KKITIANRT----LERA---- 215 (414)
T ss_pred CCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHh-----CCC------CEEEEEcCC----HHHH----
Confidence 44556666777777777765 999999999999999999988876 375 789988773 2222
Q ss_pred hhchhhhccc----CCCCCHHHHHhccCCcEEEEc-cCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcc
Q 010939 294 HFKKPWAHEH----EPVKELVDAVNAIKPTILIGT-SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW 368 (497)
Q Consensus 294 ~~k~~~a~~~----~~~~~L~e~v~~vkptvLIG~-S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~ 368 (497)
+.+|++- -..+.|.+.+.. .||+|-. |++.-+++.+.++.-.+..++=+||=|+||-.-.
T Consensus 216 ---~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie---------- 280 (414)
T COG0373 216 ---EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVE---------- 280 (414)
T ss_pred ---HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCC----------
Confidence 2344331 223567777777 8988854 4555689999988876555555999999996211
Q ss_pred ccCcEEEecCCCCCccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHH-----hccCCccCCCCCCc
Q 010939 369 SQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEAL-----AGQVTQENFDKGLL 443 (497)
Q Consensus 369 t~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aL-----A~~v~~~~~~~~~l 443 (497)
-..+.-+|.++|===-+-.+.-.-..-..+.. .+|++| +++. +.+..-.+
T Consensus 281 ----------------------~~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~-~~ae~iIeee~~~~~--~~l~~~~~ 335 (414)
T COG0373 281 ----------------------PEVGELPNVFLYTIDDLEEIVEENLEARKEEA-AKAEAIIEEELAEFM--EWLKKLEV 335 (414)
T ss_pred ----------------------ccccCcCCeEEEehhhHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHhhc
Confidence 11123455666543333333322222222221 122222 1111 13455678
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHcC
Q 010939 444 YPPFKNIRKISAHIAAEVAAKAYELG 469 (497)
Q Consensus 444 ~P~~~~ir~vs~~VA~AVa~~A~~~G 469 (497)
-|.+..+|+-+..|...-.+.|.+.-
T Consensus 336 ~~~i~~lr~~a~~v~~~ele~a~~~l 361 (414)
T COG0373 336 VPTIRALREQAEDVREEELEKALKKL 361 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899899888888888888887544
No 35
>PLN00203 glutamyl-tRNA reductase
Probab=96.51 E-value=0.0092 Score=65.88 Aligned_cols=122 Identities=22% Similarity=0.353 Sum_probs=81.3
Q ss_pred cchhHHHHHHHHHHHHHhCC-CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 010939 214 QGTASVVLAGLISAMKFLGG-SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 292 (497)
Q Consensus 214 QGTa~V~lAgll~Al~~~g~-~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l 292 (497)
.|--+|+-+++=-|.+..|. +|++.+|+|+|||..|..++..|.. .|. ++++++++. ..+ .
T Consensus 242 ~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a 303 (519)
T PLN00203 242 SGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---V 303 (519)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---H
Confidence 34445666666667777764 6999999999999999999887753 364 679998875 222 1
Q ss_pred chhchhhhc---ccCCCCCHHHHHhccCCcEEEEccCC-CCCCCHHHHHHHHccC---CCc-eEEecCCCC
Q 010939 293 QHFKKPWAH---EHEPVKELVDAVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLN---EKP-IIFSLSNPT 355 (497)
Q Consensus 293 ~~~k~~~a~---~~~~~~~L~e~v~~vkptvLIG~S~~-~g~Fteevi~~Ma~~~---~rP-IIFaLSNPt 355 (497)
...+..|-. ......++.++++. +|++|.+++. ..++++++++.|-+.. .+| +++=||.|-
T Consensus 304 ~~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 304 AALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred HHHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 111212210 01123567888876 9999987644 3589999999985322 244 566799996
No 36
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.51 E-value=0.018 Score=58.97 Aligned_cols=109 Identities=17% Similarity=0.302 Sum_probs=79.8
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 215 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
..+-.|-.|++..++..+.+++.+++|++|+|- +|..+|.+|.. .| | .+.+++++ .
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~-------t---- 193 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR-------T---- 193 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC-------c----
Confidence 346677799999999999999999999999997 99999999864 25 2 68888762 1
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEec-CCCC--CC-CCCCHHHHhc
Q 010939 294 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL-SNPT--SQ-SECTAEEAYT 367 (497)
Q Consensus 294 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaL-SNPt--~~-~E~~peda~~ 367 (497)
.+|.+.++. +|++|-+.+.++.|+.++++ +.-+|+=. .||. .. -++.+|++..
T Consensus 194 -------------~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 194 -------------QNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred -------------hhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 246666665 99999999988888988864 44555544 3663 11 1455555543
No 37
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.46 E-value=0.063 Score=54.41 Aligned_cols=133 Identities=18% Similarity=0.143 Sum_probs=92.5
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEccCCcccCCCccCCc
Q 010939 215 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~-~vD~~GLi~~~r~~~l~ 293 (497)
-||-=+.-++-.+++..+.+|++.||+|.|-|..|.+.|++|.+. |. +++ +.|++|-|++.. .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC--CCC
Confidence 466666777888888889999999999999999999999999753 63 455 999999999875 454
Q ss_pred hhchh---------------hhcccCCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CC
Q 010939 294 HFKKP---------------WAHEHEPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 355 (497)
Q Consensus 294 ~~k~~---------------~a~~~~~~--~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN-Pt 355 (497)
..+.. |....+.. -+-.|.. ..+.||||=+.. .+.+|++-+..+.+ ++-.+|.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 33221 10000000 0122222 457999997655 57999999999843 46789999999 87
Q ss_pred CCCCCCHHHHhc
Q 010939 356 SQSECTAEEAYT 367 (497)
Q Consensus 356 ~~~E~~peda~~ 367 (497)
+ + .+++.++
T Consensus 159 t-~--~a~~~L~ 167 (254)
T cd05313 159 T-A--EAIEVFR 167 (254)
T ss_pred C-H--HHHHHHH
Confidence 3 2 3445544
No 38
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.38 E-value=0.028 Score=54.34 Aligned_cols=123 Identities=17% Similarity=0.229 Sum_probs=82.2
Q ss_pred chhHHHHHHHHHHHHHh--CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC
Q 010939 215 GTASVVLAGLISAMKFL--GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 292 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~--g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l 292 (497)
.||-=+..++-.+++.. +.+|++.+++|.|.|..|..+|+.|.+. | -++++.|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 35555666677777775 8899999999999999999999988653 6 3688888651 112
Q ss_pred chhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHhc
Q 010939 293 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 367 (497)
Q Consensus 293 ~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN-Pt~~~E~~peda~~ 367 (497)
...+..|.. ... +..+... .+.|+++=++. ++++|++.++.| +-++|..-+| |+. +..+++.++
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~--~~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLA--DPRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccC--CHhHHHHHH
Confidence 222222211 111 1233333 36999995555 579999999999 5789999988 663 233455554
No 39
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.21 E-value=0.099 Score=57.35 Aligned_cols=123 Identities=18% Similarity=0.180 Sum_probs=84.0
Q ss_pred CCCceecCccchhHHH-------HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 010939 205 THLVFNDDIQGTASVV-------LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 277 (497)
Q Consensus 205 ~~~~FnDDiQGTa~V~-------lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~ 277 (497)
.+|++|=+--.|-.+. ++.+=+.+|.++..|.+.+++|+|.|..|.++|..+.. .|. ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6899986554444332 44445566777899999999999999999999999864 263 5777
Q ss_pred EccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010939 278 VDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 278 vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
+|++-. +. +.... ..-...++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 766411 10 00000 11112468888886 99999888777899999999996 555666565553
No 40
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.17 E-value=0.02 Score=58.81 Aligned_cols=85 Identities=16% Similarity=0.348 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 215 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
+-.-+|-+|++.-++-.+.+|++.+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 345678899999999999999999999999988 99999999964 25 4678787641
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 294 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 294 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|...+.++.|++++++
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk 221 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK 221 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC
Confidence 257788887 99999999999999998774
No 41
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.11 E-value=0.12 Score=52.26 Aligned_cols=199 Identities=15% Similarity=0.150 Sum_probs=103.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhh-----------cc-cC-
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA-----------HE-HE- 304 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a-----------~~-~~- 304 (497)
.||.|+|+|.-|.+||..+... | .+++++|.+---.+.-.+.+......+. .. ..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcC
Confidence 4899999999999999888653 6 3689998751100000000000000010 00 01
Q ss_pred --CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCC
Q 010939 305 --PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFD 382 (497)
Q Consensus 305 --~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~ 382 (497)
...++.+++++ .|++|=+-...-.+.+++++...+..+...|++ ||.+++ .+.++.+.+.-.-=|....||.
T Consensus 72 i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-sntSt~---~~~~~~~~~~~~~r~vg~Hf~~ 145 (287)
T PRK08293 72 ITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNSSTL---LPSQFAEATGRPEKFLALHFAN 145 (287)
T ss_pred eEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECcccC---CHHHHHhhcCCcccEEEEcCCC
Confidence 13678888877 888885432211366778888877766666663 565544 4444444332111133346777
Q ss_pred ccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCc-cCCCCCcchhhHHHHHHH
Q 010939 383 PFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLL-YPPFKNIRKISAHIAAEV 461 (497)
Q Consensus 383 pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l-~P~~~~ir~vs~~VA~AV 461 (497)
|+... ...-+-|+ ..-+++.+. .+.++...+- ...+ +.+ +.-..|..++-.+.
T Consensus 146 p~~~~---------~lvevv~~----------~~t~~~~~~-~~~~~~~~~G-----k~pv~v~~-d~pgfi~nRi~~~~ 199 (287)
T PRK08293 146 EIWKN---------NTAEIMGH----------PGTDPEVFD-TVVAFAKAIG-----MVPIVLKK-EQPGYILNSLLVPF 199 (287)
T ss_pred CCCcC---------CeEEEeCC----------CCCCHHHHH-HHHHHHHHcC-----CeEEEecC-CCCCHhHHHHHHHH
Confidence 75422 12222232 333566544 4455544332 2222 211 22235666677777
Q ss_pred HHHHH---HcCCCCCCCCchhHHHHH
Q 010939 462 AAKAY---ELGLATRLPPPKDLVKYA 484 (497)
Q Consensus 462 a~~A~---~~GlA~~~~~p~d~~~~i 484 (497)
...|. ++|+|+ |+|+....
T Consensus 200 ~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 200 LSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHcCCCC----HHHHHHHH
Confidence 66664 589875 35555443
No 42
>PLN00106 malate dehydrogenase
Probab=96.08 E-value=0.033 Score=58.07 Aligned_cols=118 Identities=23% Similarity=0.319 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhh
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 300 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a 300 (497)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|.. .|+ ...+.++|.+- .++-.-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345678888887554 59999999 9999999998864 254 25799999865 2221112332221 11
Q ss_pred ccc--CCCCCHHHHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCC
Q 010939 301 HEH--EPVKELVDAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 301 ~~~--~~~~~L~e~v~~vkptvLIG~S~~~g~--------------Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
+-. ...+++.+++++ .|++|=+.+.+.. ..+++.+.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 111 133568899988 9998877665422 3357888899999999999999998
No 43
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.06 E-value=0.023 Score=61.09 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 216 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 216 Ta~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|+-+|+=-|.+..+ ++++.|++++|||.+|-.++..|.. .|. ++|++++|. ..|...+.
T Consensus 161 ~vSv~~~Av~la~~~~~-~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra~~La-- 222 (414)
T PRK13940 161 PVSVAFSAITLAKRQLD-NISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKAQKIT-- 222 (414)
T ss_pred CcCHHHHHHHHHHHHhc-CccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHH--
Confidence 33455555555555553 5889999999999999888888754 364 689988885 22221121
Q ss_pred chhhh-cccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCce-EEecCCCC
Q 010939 296 KKPWA-HEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPI-IFSLSNPT 355 (497)
Q Consensus 296 k~~~a-~~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Fteevi~~Ma~~~~rPI-IFaLSNPt 355 (497)
..|. ....+..+|.+.+.. .|++|-+++.+ -++|.+.++ .+|. |+=||+|-
T Consensus 223 -~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPR 276 (414)
T PRK13940 223 -SAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQ 276 (414)
T ss_pred -HHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCC
Confidence 1121 011223567777876 99999887665 467876642 4565 46799996
No 44
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.98 E-value=0.024 Score=57.75 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh-chhhh
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF-KKPWA 300 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~-k~~~a 300 (497)
.|++.+++..+.+++.++++++|||.||.+++..|.. .|+ ++|+++|+. ..+.+.+... +..+.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4677788766667888999999999999999988875 375 679999985 2232222111 11111
Q ss_pred c-ccCCCCCHHHHHhccCCcEEEEccCCC
Q 010939 301 H-EHEPVKELVDAVNAIKPTILIGTSGQG 328 (497)
Q Consensus 301 ~-~~~~~~~L~e~v~~vkptvLIG~S~~~ 328 (497)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 00112455666655 99999887654
No 45
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.79 E-value=0.06 Score=51.01 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 216 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 216 Ta~V~lAgll~Al~~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||+.+.+.+..+++..|.++++.+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 677777778888887788999999999997 9999888887764 24 478888775
No 46
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.68 E-value=0.043 Score=49.39 Aligned_cols=108 Identities=19% Similarity=0.342 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhc
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH 301 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~ 301 (497)
.|+.+|++..+.++++.+++|+|+|..|..+++.+.+. | -.+++++|++ ..+ .......+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58899999988889999999999998888888877542 3 1578888875 111 1111122211
Q ss_pred c--cCCCCCHHHHHhccCCcEEEEccCCCC------CCCHHHHHHHHccCCCceEEecC-CCC
Q 010939 302 E--HEPVKELVDAVNAIKPTILIGTSGQGR------TFTKEVVEAMASLNEKPIIFSLS-NPT 355 (497)
Q Consensus 302 ~--~~~~~~L~e~v~~vkptvLIG~S~~~g------~Fteevi~~Ma~~~~rPIIFaLS-NPt 355 (497)
. .....++.++++. +|++|-+...+- .|.+.. + .+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~---~---~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL---L---KPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH---c---CCCCEEEEcCcCCC
Confidence 1 1123566676665 999997765432 132221 2 3566777774 454
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.48 E-value=0.053 Score=57.27 Aligned_cols=222 Identities=15% Similarity=0.206 Sum_probs=118.5
Q ss_pred hhHHHHHhhCCCCCceEEEEecCceeeccCCCCCc--ccccchhhHHHHhhhcCCCCCceeeEEeccCCC----cccccc
Q 010939 74 GKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCH--GMGIPVGKLSLYTALGGIRPSACLPVTIDVGTN----NEKLLD 147 (497)
Q Consensus 74 g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~--gm~I~~GKl~Ly~a~gGi~P~~~lPi~LDvgtn----n~~Ll~ 147 (497)
.++.++.+ .+.+|+|=++.+.-.|+-|--=. |..|......+|. | .|.+-|..= -+.+..
T Consensus 21 ~~v~~l~~----~g~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~-~---------dii~~Vk~p~~~~~~~~~~ 86 (370)
T TIGR00518 21 AGVAELTS----RGHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWD-A---------ELVLKVKEPLPEEYGYLRH 86 (370)
T ss_pred HHHHHHHh----CCCEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhc-C---------CEEEEeCCCCHHHHhhcCC
Confidence 34554443 46789998887777777775421 4444333334442 1 334434321 113345
Q ss_pred CcccccccccCcchhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHHHcCCCCce--ecCccchhHHHHHHHH
Q 010939 148 DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVF--NDDIQGTASVVLAGLI 225 (497)
Q Consensus 148 Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~ryr~~~~~F--nDDiQGTa~V~lAgll 225 (497)
+..++++-|+--. ..+++.+ .++ .-+.|-+|-+.. -+.+.++| +.-+-|--+|.+|+-.
T Consensus 87 g~~l~~~~~~a~~----~~~~~~l----~~~--~~t~i~~e~i~~---------~~~~~~~l~~~~~iaG~~av~~aa~~ 147 (370)
T TIGR00518 87 GQILFTYLHLAAE----RALTDAL----LDS--GTTAIAYETVQT---------ADGALPLLAPMSEVAGRLAAQVGAYH 147 (370)
T ss_pred CcEEEEEeccCCC----HHHHHHH----HHc--CCeEEEeeeeec---------cCCCCccccchhHHHHHHHHHHHHHH
Confidence 5666777666311 1222222 221 123455555531 11223333 2234444445444332
Q ss_pred HHHHHhC--------C-CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhc
Q 010939 226 SAMKFLG--------G-SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 296 (497)
Q Consensus 226 ~Al~~~g--------~-~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k 296 (497)
.- |..+ . .+...+++|+|+|.+|.+.+..+... |. +++++|++ ..+ +....
T Consensus 148 ~~-~~~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~ 207 (370)
T TIGR00518 148 LE-KTQGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLD 207 (370)
T ss_pred hH-hhcCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHH
Confidence 21 2221 1 25678899999999999999988643 62 58889874 111 11111
Q ss_pred hhhhcc----cCCCCCHHHHHhccCCcEEEEccCC-----CCCCCHHHHHHHHccCCCceEEecCC
Q 010939 297 KPWAHE----HEPVKELVDAVNAIKPTILIGTSGQ-----GRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 297 ~~~a~~----~~~~~~L~e~v~~vkptvLIG~S~~-----~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
..|... ......|.+.++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 208 ~~~g~~v~~~~~~~~~l~~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 208 AEFGGRIHTRYSNAYEIEDAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HhcCceeEeccCCHHHHHHHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 112110 1112457888875 9999987522 4568999999985 5678887774
No 48
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.22 E-value=0.12 Score=49.10 Aligned_cols=119 Identities=19% Similarity=0.278 Sum_probs=74.2
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 214 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 214 QGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
.||+--++-|++. .++..|...++|++|-|--|-|+|+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~r---~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIMR---ATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHHH---HH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHHh---cCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 5777777777764 678889999999999999999999998653 5 467776653
Q ss_pred hhchhhhc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHh
Q 010939 294 HFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY 366 (497)
Q Consensus 294 ~~k~~~a~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~ 366 (497)
|.+.-=|. +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.=|+.-..-= .-|+.-+..-
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh~--d~Eid~~~L~ 122 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGHF--DVEIDVDALE 122 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSSS--TTSBTHHHHH
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCcC--ceeEeecccc
Confidence 21111111 11123579999987 99999999988899999999995 44444433322 2666666543
No 49
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.15 E-value=0.093 Score=55.25 Aligned_cols=90 Identities=14% Similarity=0.263 Sum_probs=59.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHH-H
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV-D 311 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~-e 311 (497)
.+|++.|++++|||..|--+|+.|.+ .|. ++|+++.|.-. + .+|.. +. +
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~------~~i~v~nRt~~----~--------~~~~~-------~~~~ 219 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQR-----QGY------SRITFCSRQQL----T--------LPYRT-------VVRE 219 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHH-----cCC------CEEEEEcCCcc----c--------cchhh-------hhhh
Confidence 56999999999999998877777765 365 68999888641 1 12221 10 1
Q ss_pred HHh-ccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCceEEecCCCCC
Q 010939 312 AVN-AIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS 356 (497)
Q Consensus 312 ~v~-~vkptvLIG~----S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~ 356 (497)
++. ..+.||+|-. +++...++.+.++.. .+| ++|=||+|-.
T Consensus 220 ~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~r-~~iDLAvPRd 265 (338)
T PRK00676 220 ELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PDR-IVFDFNVPRT 265 (338)
T ss_pred hhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cCc-EEEEecCCCC
Confidence 111 1358999964 344456777766532 224 9999999974
No 50
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.02 E-value=0.063 Score=53.82 Aligned_cols=129 Identities=22% Similarity=0.296 Sum_probs=89.1
Q ss_pred cCccchhHHHHHHHHHHHHHhCCC-CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCc
Q 010939 211 DDIQGTASVVLAGLISAMKFLGGS-LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL 289 (497)
Q Consensus 211 DDiQGTa~V~lAgll~Al~~~g~~-l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~ 289 (497)
|--+-||-=+..++-.+++..+.+ |++.|++|-|.|..|...|+.|.+. |. +=+-+-|++|.|++..
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~- 72 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPD- 72 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETT-
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCC-
Confidence 334567777888888999987765 9999999999999999999999764 63 4456779999998754
Q ss_pred cCCchhc-hhhhcccCC-CCCHH-----------H--HHhccCCcEEEEccCCCCCCCHHHHH-HHHccCCCceEEecCC
Q 010939 290 ESLQHFK-KPWAHEHEP-VKELV-----------D--AVNAIKPTILIGTSGQGRTFTKEVVE-AMASLNEKPIIFSLSN 353 (497)
Q Consensus 290 ~~l~~~k-~~~a~~~~~-~~~L~-----------e--~v~~vkptvLIG~S~~~g~Fteevi~-~Ma~~~~rPIIFaLSN 353 (497)
.|+... ..+...... +..+. + .+=.++.|+||=+ +.++.+|++.+. .+. +.-+||.--+|
T Consensus 73 -Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN 148 (244)
T PF00208_consen 73 -GLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGAN 148 (244)
T ss_dssp -EEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSS
T ss_pred -CchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcc
Confidence 232211 111111111 11111 1 3445799999988 556799999998 773 35789999999
Q ss_pred -CC
Q 010939 354 -PT 355 (497)
Q Consensus 354 -Pt 355 (497)
|+
T Consensus 149 ~p~ 151 (244)
T PF00208_consen 149 GPL 151 (244)
T ss_dssp SSB
T ss_pred hhc
Confidence 55
No 51
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.02 E-value=0.059 Score=54.78 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCC--CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhh
Q 010939 222 AGLISAMKFLGG--SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 299 (497)
Q Consensus 222 Agll~Al~~~g~--~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~ 299 (497)
.|++.+++-.+. ++++.+++++|||.||-+|+-.|.+ .|. ++|++++|. ..|.+.|.+ .|
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt----~~ka~~La~---~~ 169 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN----PDKLSRLVD---LG 169 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC----HHHHHHHHH---Hh
Confidence 356777776663 6889999999999999888887764 375 789999874 223222221 11
Q ss_pred hccc--CCC---CCHHHHHhccCCcEEEEccCCCCCCCHHH
Q 010939 300 AHEH--EPV---KELVDAVNAIKPTILIGTSGQGRTFTKEV 335 (497)
Q Consensus 300 a~~~--~~~---~~L~e~v~~vkptvLIG~S~~~g~Fteev 335 (497)
.... ... .++.+++. ++|++|.++..+-.++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~ 208 (282)
T TIGR01809 170 VQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVD 208 (282)
T ss_pred hhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHH
Confidence 1100 011 12334443 4899999888764444443
No 52
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.00 E-value=0.078 Score=51.26 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 468999999999999999999999764 76 799999997
No 53
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.87 E-value=0.053 Score=54.10 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=80.4
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc--cCCCCCHHHHHhcc
Q 010939 240 FLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 316 (497)
Q Consensus 240 iv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~--~~~~~~L~e~v~~v 316 (497)
|.|+|| |..|.++|..|+.. |. .....++++|.+.-..+.....+.+....+ .. -...+++.|++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 579999 99899999887653 42 123689999986411111111132222222 11 1113578899988
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc--cCcEEEecCC
Q 010939 317 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 379 (497)
Q Consensus 317 kptvLIG~S~~~g~--------------Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t--~Grai~AsGs 379 (497)
+|++|=+.+.++. .-+++.+.|.+++...+++-.|||. .....-+++++ .-+-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 9998865554322 3468899999999999999999995 55666666663 2234777774
No 54
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.87 E-value=0.29 Score=50.49 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-+|++..++-.+.+|+..+++++|-|- -|.-+|.+|.. .| ..+++++++
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC--------------
Confidence 4578899999999999999999999999998 99999999864 24 357777664
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecC
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLS 352 (497)
..+|.+.++. +|++|-..+.++.|+.++|+ +.-+|.=..
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888887 99999999999999999886 556665554
No 55
>PRK05086 malate dehydrogenase; Provisional
Probab=94.75 E-value=0.18 Score=52.15 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=67.6
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc-CCCCCHHHHHhc
Q 010939 238 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNA 315 (497)
Q Consensus 238 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~e~v~~ 315 (497)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+..-++++. .....-. ....++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 48999999 99999999887542 122 256889997522 11110012211 0000000 012577788887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHccCCCceEEecCCCC
Q 010939 316 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 316 vkptvLIG~S~~~---g~-----------Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
.|++|=+.+.+ |. ..+++++.|.+++.+.+|+--|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99888666653 21 4568999999999999999999997
No 56
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.69 E-value=0.13 Score=52.98 Aligned_cols=83 Identities=14% Similarity=0.186 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-+|++.=++-.+.+++..+++++|.| ..|.-+|.+|.. .| ..+.+++++ .
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~g-------AtVtv~hs~-------t------ 191 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AG-------ASVSVCHIL-------T------ 191 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CEEEEEeCC-------c------
Confidence 347888899999999999999999999999 999999999964 25 346666442 0
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|...+.++.+++++|+
T Consensus 192 -----------~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 192 -----------KDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred -----------HHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 236678887 99999999999999999995
No 57
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.67 E-value=0.066 Score=44.63 Aligned_cols=94 Identities=15% Similarity=0.278 Sum_probs=62.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ccCCcccCCCccCCchhchhhhcccCCCC-CHHHHHhcc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHEHEPVK-ELVDAVNAI 316 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~v-D~~GLi~~~r~~~l~~~k~~~a~~~~~~~-~L~e~v~~v 316 (497)
||.|+|+|.-|.++++.+... |. ...+++++ +++ .+.+...++.+.. .-.. +..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGV--QATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTT--EEESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhcc--ccccCChHHhhcc-
Confidence 789999999999999988763 65 34678755 553 1222222222221 0123 78999996
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCC
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 354 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNP 354 (497)
+|++| ++-.+ ..-+++++++....+..+|..++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99888 66655 4556788888667889999988886
No 58
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.56 E-value=0.16 Score=45.46 Aligned_cols=37 Identities=35% Similarity=0.540 Sum_probs=31.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcce
Confidence 478999999999999999999876 76 89999999833
No 59
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.55 E-value=0.17 Score=56.02 Aligned_cols=222 Identities=16% Similarity=0.217 Sum_probs=113.9
Q ss_pred CCceEEEEecCceeeccCCCC--CcccccchhhHHHHhhhcCCCCCceeeEEeccCCC----ccccccCcccccccccCc
Q 010939 86 KNIQVIVVTDGERILGLGDLG--CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTN----NEKLLDDEFYIGLRQKRA 159 (497)
Q Consensus 86 ~~v~viVVTDG~rILGLGDlG--~~gm~I~~GKl~Ly~a~gGi~P~~~lPi~LDvgtn----n~~Ll~Dp~YlG~r~~R~ 159 (497)
.+.+|+|=++.+.-.|.-|-= ..|..|.-. ..+| . + .|.|-|..- -+.|.++-.++|+-|+--
T Consensus 28 ~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~-~~~~-~--------a-diIlkV~~P~~~e~~~l~~g~tli~~l~p~~ 96 (511)
T TIGR00561 28 LGFDVLVETGAGAKASFADRAFESAGAGIVDG-TLFW-Q--------S-DIILKVNAPSDAEIAELPAGKALVSFIWPAQ 96 (511)
T ss_pred CCCEEEEECCCCcCCCcCHHHHHHcCCEEecc-cchh-c--------C-CEEEEeCCCCHHHHHhcCCCCEEEEEcCccC
Confidence 356777777755555555532 112223211 1122 0 1 344544322 245667788888888654
Q ss_pred chhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHHHcCCCCcee--cCccchhHHHHHHHHHHHHHhC-----
Q 010939 160 IGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASVVLAGLISAMKFLG----- 232 (497)
Q Consensus 160 ~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTa~V~lAgll~Al~~~g----- 232 (497)
. .|.++++.++ .=++|-+|.+-.- +|- .+..+|. .-|-|-.+|..|+=.-.-...|
T Consensus 97 n--------~~ll~~l~~k--~it~ia~E~vpri------sra-q~~d~lssma~iAGy~Avi~Aa~~lgr~~~g~~taa 159 (511)
T TIGR00561 97 N--------PELMEKLAAK--NITVLAMDAVPRI------SRA-QKLDALSSMANIAGYRAIIEAAHEFGRFFTGQITAA 159 (511)
T ss_pred C--------HHHHHHHHHc--CCEEEEeeccccc------ccC-CccCcchhhHHHHHHHHHHHHHHHhhhhcCCceecC
Confidence 2 3333333332 2345777755320 111 2233332 4566666666554333222222
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh------------chhhh
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF------------KKPWA 300 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~------------k~~~a 300 (497)
......|++++|+|.+|+..+..+... |. +++++|.+.-... +.+.+... ..-||
T Consensus 160 g~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rle-~a~~lGa~~v~v~~~e~g~~~~gYa 226 (511)
T TIGR00561 160 GKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVKE-QVQSMGAEFLELDFKEEGGSGDGYA 226 (511)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHH-HHHHcCCeEEeccccccccccccce
Confidence 134568999999999999987777542 52 4777887643110 10001000 01122
Q ss_pred cccCCC------CCHHHHHhccCCcEEEEccCC-----CCCCCHHHHHHHHccCCCceEEecCC
Q 010939 301 HEHEPV------KELVDAVNAIKPTILIGTSGQ-----GRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 301 ~~~~~~------~~L~e~v~~vkptvLIG~S~~-----~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
+...+. .-+.|.++. .|++|++.-. +-+.|+++++.|. +.-+|.=||-
T Consensus 227 ~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MK---pGsvIVDlA~ 285 (511)
T TIGR00561 227 KVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMK---AGSVIVDLAA 285 (511)
T ss_pred eecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCC---CCCEEEEeee
Confidence 211110 114555655 9999999833 3358999999997 3344444443
No 60
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.49 E-value=0.092 Score=54.36 Aligned_cols=126 Identities=16% Similarity=0.278 Sum_probs=78.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccC-CCCCHHHHHhcc
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE-PVKELVDAVNAI 316 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~-~~~~L~e~v~~v 316 (497)
.||.|+|||..|..+|.+|+. .|+ ...+.++|.+-=..++-.-+|.+.. +|-+... ..++. +.+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 499999999999999998864 366 3679999984221221111132222 2211110 11344 55776
Q ss_pred CCcEEEEccCCCCC--CC------------HHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccc--cCcEEEecCCC
Q 010939 317 KPTILIGTSGQGRT--FT------------KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 380 (497)
Q Consensus 317 kptvLIG~S~~~g~--Ft------------eevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t--~Grai~AsGsP 380 (497)
.|++|=+.+.+.. -| +++++.|.+++...+|+-.|||. ++...-+++++ +-+-+|++|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 9999866665321 11 46788888999999999999996 55566666665 22336666643
No 61
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.36 E-value=0.39 Score=44.46 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhch
Q 010939 219 VVLAGLISAMKFLGGSLADQRFLFLGAGEA-GTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK 297 (497)
Q Consensus 219 V~lAgll~Al~~~g~~l~d~riv~~GAGsA-g~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~ 297 (497)
.|..|++.-++..|.+++.++++++|.+.. |.-+|.+|. + +| ..+..+|++.
T Consensus 10 ~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~g-------atV~~~~~~t--------------- 62 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DG-------ATVYSCDWKT--------------- 62 (140)
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CC-------CEEEEeCCCC---------------
Confidence 578889999999999999999999998653 444444443 3 35 3567777641
Q ss_pred hhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 298 PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 298 ~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.|+++. +|++|-..+.++.|+.++||
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 257788988 99999999999999999987
No 62
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.35 E-value=0.096 Score=56.48 Aligned_cols=125 Identities=14% Similarity=0.267 Sum_probs=76.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHH-hcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-cCC-----CCCHH
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISK-QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 310 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~-~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~-----~~~L~ 310 (497)
.||+|+||||+ -+-.|+..|.+ ...+ ..+.||++|-+- ..|-+.+...-+.+.+. ..+ .+++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS---YTPELIEGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH---hHHHHHHHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 33344444433 2333 247899999862 22211111111122222 112 25899
Q ss_pred HHHhccCCcEEEEccCCCCC----C------------------------------CHHHHHHHHccCCCceEEecCCCCC
Q 010939 311 DAVNAIKPTILIGTSGQGRT----F------------------------------TKEVVEAMASLNEKPIIFSLSNPTS 356 (497)
Q Consensus 311 e~v~~vkptvLIG~S~~~g~----F------------------------------teevi~~Ma~~~~rPIIFaLSNPt~ 356 (497)
||+++ +|.+|=.-.++|. - =.++++.|.++|..-+|+=.|||..
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ 148 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG 148 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH
Confidence 99988 8888755555542 1 1288889999999999999999973
Q ss_pred CCCCCHHHHhccccCcEEEecC
Q 010939 357 QSECTAEEAYTWSQGRAIFASG 378 (497)
Q Consensus 357 ~~E~~peda~~~t~Grai~AsG 378 (497)
+..+-+++++.-| +|.+|
T Consensus 149 ---ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 149 ---IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred ---HHHHHHHHhccCC-EEeeC
Confidence 5556666777444 55544
No 63
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.14 E-value=0.19 Score=52.30 Aligned_cols=126 Identities=17% Similarity=0.263 Sum_probs=76.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc---CCCCCHHHH
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 312 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e~ 312 (497)
+..||.|+|||..|.++|.+++. .|+ ..+.++|.+-=...+..-++.+. ..+.... ...+++ ++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~ 71 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-ED 71 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HH
Confidence 34699999999999999988654 365 24999997532222111111111 1111111 112456 57
Q ss_pred HhccCCcEEEEccCCCCCC-------------------CHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccc--C
Q 010939 313 VNAIKPTILIGTSGQGRTF-------------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--G 371 (497)
Q Consensus 313 v~~vkptvLIG~S~~~g~F-------------------teevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~--G 371 (497)
+++ +|++|=+.+.++-- -.++++.|.+++..-+++--|||. ......+++.++ -
T Consensus 72 l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~---di~t~~~~~~sg~p~ 146 (321)
T PTZ00082 72 IAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL---DVMVKLLQEHSGLPK 146 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHhcCCCh
Confidence 776 99998655544321 247888898999877999999996 344445555542 1
Q ss_pred cEEEecCC
Q 010939 372 RAIFASGS 379 (497)
Q Consensus 372 rai~AsGs 379 (497)
+-+|++|.
T Consensus 147 ~rviGlgt 154 (321)
T PTZ00082 147 NKVCGMAG 154 (321)
T ss_pred hhEEEecC
Confidence 34777773
No 64
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.13 E-value=0.18 Score=51.64 Aligned_cols=125 Identities=15% Similarity=0.231 Sum_probs=77.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc--CCCCCHHHHHhcc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNAI 316 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~e~v~~v 316 (497)
||.|+|+|.+|..+|..|+. .|+ ..++.++|++-=..++-..+|.+.. .+.... -...+. +.+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~-~~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDY-SDCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCH-HHhCC-
Confidence 89999999999999998864 265 2579999985222211111122111 111100 011333 44655
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccC--cEEEecCCC
Q 010939 317 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGSP 380 (497)
Q Consensus 317 kptvLIG~S~~~g~--------------Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~G--rai~AsGsP 380 (497)
.|++|=+.+.+.. +=+++.+.|.+++..-+|+-.|||. .+...-++++++= +-+|++|.-
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~---d~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV---DVITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH---HHHHHHHHHHhCcCHHHEeeccch
Confidence 9999987776421 1257788888999999999999996 3555556555321 337777654
No 65
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.99 E-value=0.24 Score=51.31 Aligned_cols=126 Identities=19% Similarity=0.316 Sum_probs=77.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc---CCCCCHHHH
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 312 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e~ 312 (497)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ...++++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 45699999999999999988764 364 35999998521111111012221 1111111 1124665 6
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccc--CcEEEe
Q 010939 313 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 376 (497)
Q Consensus 313 v~~vkptvLIG~S~~~g~--------------Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~--Grai~A 376 (497)
+++ +|++|=+.+.+.- +-+++.+.|.+++..-+++=.|||. ......++++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 777 8998866655422 2348899999999999888889996 444556666652 133777
Q ss_pred cCC
Q 010939 377 SGS 379 (497)
Q Consensus 377 sGs 379 (497)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 764
No 66
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.96 E-value=0.15 Score=53.34 Aligned_cols=102 Identities=21% Similarity=0.292 Sum_probs=63.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCC---c-----cCCc--hhchhhhc-
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR---L-----ESLQ--HFKKPWAH- 301 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r---~-----~~l~--~~k~~~a~- 301 (497)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=+ ..+. . ++.. ..|..-|+
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~v-e~sNL~RQ~l~~~~d~~~g~~Ka~aa~~ 87 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDYV-EWSNLQRQQLYTEEDAKQKKPKAIAAKE 87 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCcc-cccccCccccccHHHccCCccHHHHHHH
Confidence 568899999999999999999999875 76 79999999832 1110 0 0000 00111110
Q ss_pred ---c-cC---------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEe
Q 010939 302 ---E-HE---------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 350 (497)
Q Consensus 302 ---~-~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFa 350 (497)
. .+ .. .++.+.++. .|++|-++.- .-+..++..++.....|.|++
T Consensus 88 ~l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D~--~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 88 HLRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATDN--FDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 0 01 11 246666665 7888877642 235566777777777888875
No 67
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.96 E-value=0.15 Score=55.12 Aligned_cols=125 Identities=17% Similarity=0.283 Sum_probs=76.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhc-CCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-cCC-----CCCHH
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQT-NMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 310 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~-G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~-----~~~L~ 310 (497)
.||+|+||||+ -...|+..+.+.. .++ ...|||+|-+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999995 4545555554322 342 4789999975 44422222222223222 112 25899
Q ss_pred HHHhccCCcEEEEccCCC--------------------------CCCC--------HHHHHHHHccCCCceEEecCCCCC
Q 010939 311 DAVNAIKPTILIGTSGQG--------------------------RTFT--------KEVVEAMASLNEKPIIFSLSNPTS 356 (497)
Q Consensus 311 e~v~~vkptvLIG~S~~~--------------------------g~Ft--------eevi~~Ma~~~~rPIIFaLSNPt~ 356 (497)
||+++ +|.+|-.-.+| |.|. .++++.|.++|..-+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99988 88776443333 3332 38899999999999999999997
Q ss_pred CCCCCHHHHhccccCcEEEecC
Q 010939 357 QSECTAEEAYTWSQGRAIFASG 378 (497)
Q Consensus 357 ~~E~~peda~~~t~Grai~AsG 378 (497)
-+.-+-+++++...-++.+|
T Consensus 147 --di~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 --GEVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred --HHHHHHHHHhCCCCcEEEEC
Confidence 33334445555333355544
No 68
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.94 E-value=0.83 Score=50.10 Aligned_cols=123 Identities=16% Similarity=0.219 Sum_probs=70.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh------------chhhhcc--c
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF------------KKPWAHE--H 303 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~------------k~~~a~~--~ 303 (497)
.||.|+|+|.-|.+||..++.+ |. +++++|+.- +..+.+... +.+++.. -
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHP----EAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCH----HHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 3799999999999999999763 64 688888741 110111100 0001110 0
Q ss_pred CCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcc--ccCcEEEecCCC
Q 010939 304 EPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAIFASGSP 380 (497)
Q Consensus 304 ~~~~~L~e~v~~vkptvLIG~S~~~g~-Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~--t~Grai~AsGsP 380 (497)
....++.|++++ .|++| .+..... +.+++.+.+.+..+.-.|+..|--+ .+ +++..+. ..|+++++ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123688899987 88888 5544432 4566666666665555666544332 22 3333222 24555554 58
Q ss_pred CCccc
Q 010939 381 FDPFE 385 (497)
Q Consensus 381 f~pv~ 385 (497)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 88774
No 69
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.92 E-value=0.34 Score=53.67 Aligned_cols=224 Identities=17% Similarity=0.242 Sum_probs=116.2
Q ss_pred CceEEEEecCceeeccCCCC--CcccccchhhHHHHhhhcCCCCCceeeEEeccCCCc----cccccCcccccccccCcc
Q 010939 87 NIQVIVVTDGERILGLGDLG--CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNN----EKLLDDEFYIGLRQKRAI 160 (497)
Q Consensus 87 ~v~viVVTDG~rILGLGDlG--~~gm~I~~GKl~Ly~a~gGi~P~~~lPi~LDvgtnn----~~Ll~Dp~YlG~r~~R~~ 160 (497)
+.+|+|=++.+--.|.-|-= ..|..|.-.+ .+| . . .|.|-|..-. +.|.++-.++|+-|+.-.
T Consensus 30 G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~-~v~-~---~------diilkV~~P~~~e~~~l~~g~~li~~l~p~~~ 98 (509)
T PRK09424 30 GFEVVVESGAGQLASFDDAAYREAGAEIVDGA-AVW-Q---S------DIILKVNAPSDDEIALLREGATLVSFIWPAQN 98 (509)
T ss_pred CCEEEEeCCCCcCCCCCHHHHHHCCCEEecCc-ccc-c---C------CEEEEeCCCCHHHHHhcCCCCEEEEEeCcccC
Confidence 56777777755555555522 1122332111 222 1 1 3444443221 356677788888887432
Q ss_pred hhhhHHHHHHHHHHHHHhhCCCcceeeecCCC---CcHHHHHHHHcCCCCceecCccchhHHHHHHHHHHHHHhC-----
Q 010939 161 GQEYAELLHEFMTAVKQNYGERILIQFEDFAN---HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLG----- 232 (497)
Q Consensus 161 g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~---~~af~iL~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g----- 232 (497)
.|.++++.++ .=++|-+|.+-. ...+ ....-...|-|=-+|..|+-.-.--..|
T Consensus 99 --------~~l~~~l~~~--~it~ia~e~vpr~sraq~~--------d~lssma~IAGy~Av~~aa~~~~~~~~g~~taa 160 (509)
T PRK09424 99 --------PELLEKLAAR--GVTVLAMDAVPRISRAQSL--------DALSSMANIAGYRAVIEAAHEFGRFFTGQITAA 160 (509)
T ss_pred --------HHHHHHHHHc--CCEEEEeecccccccCCCc--------ccccchhhhhHHHHHHHHHHHhcccCCCceecc
Confidence 3333333332 234567777642 1222 2222244566655554443322111111
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCcc---CC-------c-----hhch
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE---SL-------Q-----HFKK 297 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~---~l-------~-----~~k~ 297 (497)
......|++|+|||.+|++.+..... .| | +++.+|.+- .|.+ .+ + ....
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~~----~rle~aeslGA~~v~i~~~e~~~~~~ 224 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTRP----EVAEQVESMGAEFLELDFEEEGGSGD 224 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCCH----HHHHHHHHcCCeEEEecccccccccc
Confidence 13457899999999999888766643 36 3 488888741 1100 00 0 0111
Q ss_pred hhhcccCCCCCH--------HHHHhccCCcEEEEccCCCC-----CCCHHHHHHHHccCCCceEEecCCCC-CCCCCCH
Q 010939 298 PWAHEHEPVKEL--------VDAVNAIKPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTA 362 (497)
Q Consensus 298 ~~a~~~~~~~~L--------~e~v~~vkptvLIG~S~~~g-----~Fteevi~~Ma~~~~rPIIFaLSNPt-~~~E~~p 362 (497)
.|++... .+. .+.++ +.|++|.+++.+| +++++.++.|. +.-+|.=++.+. ..+|++.
T Consensus 225 gya~~~s--~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 225 GYAKVMS--EEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred chhhhcc--hhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 2333211 122 22222 4999999999866 67999999996 556676677753 3345543
No 70
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.84 E-value=0.16 Score=53.61 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=63.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCC--------ccCCchhchhhhcc--
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR--------LESLQHFKKPWAHE-- 302 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r--------~~~l~~~k~~~a~~-- 302 (497)
++|++.||+++|+|..|..++..|+.+ |+ ++|.++|.+= +.... .+++-..|..-+.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l 198 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQRL 198 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHHHH
Confidence 357888999999999999999999765 86 7899999872 11110 00111112111110
Q ss_pred ---cCC---------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecC
Q 010939 303 ---HEP---------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 303 ---~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLS 352 (497)
.+. . .++.+.++. .|++|-++... =++..+..++.....|.|++-.
T Consensus 199 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i~~~~ 258 (376)
T PRK08762 199 AALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACVKLGKPLVYGAV 258 (376)
T ss_pred HHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEEe
Confidence 010 1 134555654 78888766532 2456677777777888888643
No 71
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.81 E-value=0.17 Score=50.53 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 468889999999999999999999764 86 799999998
No 72
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.81 E-value=0.19 Score=53.39 Aligned_cols=102 Identities=23% Similarity=0.308 Sum_probs=66.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCC-c-------cCCchhchhhhcc--
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR-L-------ESLQHFKKPWAHE-- 302 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r-~-------~~l~~~k~~~a~~-- 302 (497)
++|++.||+++|+|..|.-++..|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-+++
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 668899999999999999999999865 76 78999999832 2111 0 0111122222211
Q ss_pred ---cCC---------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEe
Q 010939 303 ---HEP---------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 350 (497)
Q Consensus 303 ---~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFa 350 (497)
.+. + .++.+.+++ .|++|.++.. .=++-+|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--FATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 111 1 245566766 8888877664 235667778887788899886
No 73
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.77 E-value=0.91 Score=45.85 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=26.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.||.|+|+|.-|.+||..+... |. +++++|++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998653 63 68999975
No 74
>PRK08328 hypothetical protein; Provisional
Probab=93.72 E-value=0.04 Score=54.47 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=71.6
Q ss_pred HHHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 010939 199 LEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 278 (497)
Q Consensus 199 L~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~v 278 (497)
++||..++..|..+. -.+|++.||+++|+|..|..+|..|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877776665422 2457888999999999999999999875 86 789999
Q ss_pred ccCCcccCCCccCCchhchhhh-cccCC----CCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE-ecC
Q 010939 279 DSKGLIVSSRLESLQHFKKPWA-HEHEP----VKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLS 352 (497)
Q Consensus 279 D~~GLi~~~r~~~l~~~k~~~a-~~~~~----~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIF-aLS 352 (497)
|.+= +.. .+|+-+ .+. .++-. .....+.++...|++-|=... +-++++-+...-+ +.-+|+ +.-
T Consensus 58 D~D~-ve~---sNL~Rq--~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~d 127 (231)
T PRK08328 58 DEQT-PEL---SNLNRQ--ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCLD 127 (231)
T ss_pred cCCc-cCh---hhhccc--cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECCC
Confidence 9871 111 123321 111 11111 112344567777888776543 3466665544332 445666 455
Q ss_pred CCC
Q 010939 353 NPT 355 (497)
Q Consensus 353 NPt 355 (497)
|+.
T Consensus 128 ~~~ 130 (231)
T PRK08328 128 NFE 130 (231)
T ss_pred CHH
Confidence 765
No 75
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.72 E-value=0.094 Score=48.46 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=51.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhch--hhhcc---cCC---CCCHH
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK--PWAHE---HEP---VKELV 310 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~--~~a~~---~~~---~~~L~ 310 (497)
||.|+|||+.|+++|..+.. .| .++.|.+++.-..+ .++..+. .|... ... ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~-----~g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-----NG-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----CT-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHH-----cC-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 78999999999999999876 35 57777777641111 1222111 11110 111 26899
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccC
Q 010939 311 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN 343 (497)
Q Consensus 311 e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~ 343 (497)
+++++ +|++| +..+. -+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iavPs-~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAVPS-QAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S-G-GGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecccH-HHHHHHHHHHhhcc
Confidence 99987 78766 33332 35689999998753
No 76
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.64 E-value=0.26 Score=48.37 Aligned_cols=38 Identities=37% Similarity=0.535 Sum_probs=34.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 468899999999999999999999774 86 899999988
No 77
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.64 E-value=0.16 Score=52.11 Aligned_cols=49 Identities=33% Similarity=0.459 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.|++.+++..+.++++.+++++|||-|+.+|+-.+.. .|+ ++|++++|.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4677888888888999999999999999888776654 375 789999985
No 78
>PRK08223 hypothetical protein; Validated
Probab=93.62 E-value=0.14 Score=52.72 Aligned_cols=128 Identities=14% Similarity=0.036 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 010939 196 FDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI 275 (497)
Q Consensus 196 f~iL~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i 275 (497)
|..-++|..++..|..+-| .+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 5556677665555443322 568899999999999999999999875 86 789
Q ss_pred EEEccCCcccCCCc-------cCCchhchhhhcc-----cC---------C--CCCHHHHHhccCCcEEEEccCCCCCCC
Q 010939 276 WLVDSKGLIVSSRL-------ESLQHFKKPWAHE-----HE---------P--VKELVDAVNAIKPTILIGTSGQGRTFT 332 (497)
Q Consensus 276 ~~vD~~GLi~~~r~-------~~l~~~k~~~a~~-----~~---------~--~~~L~e~v~~vkptvLIG~S~~~g~Ft 332 (497)
.++|.+=+=..+-. +++-..|..-|++ .+ . ..++.+.++. .|++|=.+.-...=+
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~~~~~ 132 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFFEFDA 132 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCCcHHH
Confidence 99998833221110 1122223222221 01 1 1356677765 788873332110125
Q ss_pred HHHHHHHHccCCCceEEecCCC
Q 010939 333 KEVVEAMASLNEKPIIFSLSNP 354 (497)
Q Consensus 333 eevi~~Ma~~~~rPIIFaLSNP 354 (497)
.-+|...+.....|.|.+-+.-
T Consensus 133 r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 133 RRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred HHHHHHHHHHcCCCEEEEeccC
Confidence 6777777777888888875444
No 79
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.51 E-value=0.18 Score=49.39 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+|++.||+++|+|..|..||..|+.+ |+ ++|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 458899999999999999999999764 76 789999997
No 80
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.47 E-value=0.53 Score=46.25 Aligned_cols=102 Identities=21% Similarity=0.343 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhC---------CCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCC
Q 010939 219 VVLAGLISAMKFLG---------GSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR 288 (497)
Q Consensus 219 V~lAgll~Al~~~g---------~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r 288 (497)
+|-.|++.=|+..+ .+++.++++++|-+. -|.-+|.||.. +| ..++++|++|.....+
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~~ 102 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFTR 102 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCccccccc
Confidence 45666666666654 489999999999765 57777777754 35 4689999999888665
Q ss_pred ccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHH
Q 010939 289 LESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVE 337 (497)
Q Consensus 289 ~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~-Fteevi~ 337 (497)
...+.+.+.+ ......+|.|.++. +|++|-.-+.++. ++.|+|+
T Consensus 103 ~~~~~hs~t~---~~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 103 GESIRHEKHH---VTDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccc---ccchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 3322111100 00111348899988 9999999999998 8999996
No 81
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.35 E-value=0.21 Score=50.78 Aligned_cols=126 Identities=17% Similarity=0.308 Sum_probs=73.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-c-CCCCCHHHHHhc
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-H-EPVKELVDAVNA 315 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~-~~~~~L~e~v~~ 315 (497)
.||.|+|||..|.++|..+.. .|+ . .++++|.+-=..++...++.+........ . ...++. +++++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~ 70 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAG 70 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCC
Confidence 489999999999999998764 254 2 79999983111111000011100000000 0 012355 55766
Q ss_pred cCCcEEEEccCCC---C-----------CCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccC---cEEEecC
Q 010939 316 IKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG---RAIFASG 378 (497)
Q Consensus 316 vkptvLIG~S~~~---g-----------~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~G---rai~AsG 378 (497)
+|++|=+.+.+ | -.-+++++.|.+++...+++-.|||. .....-+++++ | +-+|++|
T Consensus 71 --aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~~~viG~g 144 (307)
T PRK06223 71 --SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPKNRVIGMA 144 (307)
T ss_pred --CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCcccEEEeC
Confidence 89888332222 2 12357788888899999888889996 34444555555 3 4588888
Q ss_pred CCC
Q 010939 379 SPF 381 (497)
Q Consensus 379 sPf 381 (497)
.-.
T Consensus 145 t~l 147 (307)
T PRK06223 145 GVL 147 (307)
T ss_pred CCc
Confidence 443
No 82
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.23 E-value=0.059 Score=49.36 Aligned_cols=105 Identities=22% Similarity=0.357 Sum_probs=66.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-CcccCCCccCCchhchhhhcccCCCCCHHHHHhc
Q 010939 238 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 315 (497)
Q Consensus 238 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~-GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 315 (497)
.||.|+|| |.-|..+|-+|+.. |+ -+++.++|.+ .. .++..-+|++..-..-++..-..+..+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~-~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDK-AEGEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHH-HHHHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCccc-ceeeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999988763 65 2569999997 21 1111111222211111111111355667776
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHccCCCceEEecCCCC
Q 010939 316 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 316 vkptvLIG~S~~~---g~-----------Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
.|++|=+.+.+ |- +-+++.+.+.+++...+++-.|||.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 99998555543 21 2246778888999999999999996
No 83
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.21 E-value=0.36 Score=49.77 Aligned_cols=83 Identities=17% Similarity=0.339 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAGEA-GTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAGsA-g~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-.|++.=++-.+.++++.+++++|.|.- |.-+|.+|.. .| ..+.+++++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVt~~hs~-------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AG-------ATVTICHSK-------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEecCC--------------
Confidence 45678899999999999999999999999998 9999999864 25 346655442
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 ----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999998876
No 84
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.97 E-value=0.22 Score=50.96 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.|++.+++..+.++++.+++++|||-||-+|+-.|.+ .|. ++|+++||.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 3567777755556888999999999999999887765 375 789999985
No 85
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.88 E-value=0.34 Score=49.89 Aligned_cols=83 Identities=20% Similarity=0.362 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-.|++.=++-.+.+|+..+++++|-+ .-|.-+|.++... | ..+.+++++
T Consensus 132 ~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~-------------- 185 (279)
T PRK14178 132 APCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK-------------- 185 (279)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC--------------
Confidence 456888899999999999999999999999 8888888888542 4 356666653
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|+.-+.++.+|+++|+
T Consensus 186 ----------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 ----------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred ----------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 0358888987 99999999988999999983
No 86
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=92.78 E-value=0.28 Score=52.71 Aligned_cols=127 Identities=16% Similarity=0.208 Sum_probs=73.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc-C-----CCCCHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-E-----PVKELVD 311 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~-----~~~~L~e 311 (497)
.||.|+|||+.|.+.+- +..+..... .+..+++++|.+- ++.+.+...-+.+.... . ..+++.+
T Consensus 1 ~KIaIIGaGs~G~a~a~--~~~i~~~~~----~~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~e 70 (423)
T cd05297 1 IKIAFIGAGSVVFTKNL--VGDLLKTPE----LSGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRRE 70 (423)
T ss_pred CeEEEECCChHHhHHHH--HHHHhcCCC----CCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHH
Confidence 37999999998887653 111111011 1235899999752 22111111111111111 1 1368999
Q ss_pred HHhccCCcEEEEccCCC---------------CCCC---------------------HHHHHHHHccCCCceEEecCCCC
Q 010939 312 AVNAIKPTILIGTSGQG---------------RTFT---------------------KEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 312 ~v~~vkptvLIG~S~~~---------------g~Ft---------------------eevi~~Ma~~~~rPIIFaLSNPt 355 (497)
++++ +|++|=.-..+ |+|. .++.+.|.+++++.+++=.|||.
T Consensus 71 al~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv 148 (423)
T cd05297 71 ALDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM 148 (423)
T ss_pred HhcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH
Confidence 9987 88887544321 1221 27777888888999999999997
Q ss_pred CCCCCCHHHHhccccCcEEEecC-CC
Q 010939 356 SQSECTAEEAYTWSQGRAIFASG-SP 380 (497)
Q Consensus 356 ~~~E~~peda~~~t~Grai~AsG-sP 380 (497)
-+..+-+++.++ .-++.+| +|
T Consensus 149 ---~i~t~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 ---AELTWALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred ---HHHHHHHHHhCC-CCEEEECCcH
Confidence 333344456665 4577777 44
No 87
>PRK15076 alpha-galactosidase; Provisional
Probab=92.73 E-value=0.32 Score=52.67 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=74.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch-hchhhhcccCC-----CCCHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWAHEHEP-----VKELVD 311 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~-~k~~~a~~~~~-----~~~L~e 311 (497)
.||.|+|||+.|.. ..++..+....++ +...++|+|.+- +|.+.... .+..++..... .+++.+
T Consensus 2 ~KIaIIGaGsvg~~--~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFT--KNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhH--HHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 58999999998543 3333333221233 235899999752 22110000 01111111111 257889
Q ss_pred HHhccCCcEEEEccCCCCCC-------------------------------------CHHHHHHHHccCCCceEEecCCC
Q 010939 312 AVNAIKPTILIGTSGQGRTF-------------------------------------TKEVVEAMASLNEKPIIFSLSNP 354 (497)
Q Consensus 312 ~v~~vkptvLIG~S~~~g~F-------------------------------------teevi~~Ma~~~~rPIIFaLSNP 354 (497)
++++ +|++|=..+++|.- =.++++.|.+++..-+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 9887 88887555554321 14778888899999999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEecC-CCC
Q 010939 355 TSQSECTAEEAYTWSQGRAIFASG-SPF 381 (497)
Q Consensus 355 t~~~E~~peda~~~t~Grai~AsG-sPf 381 (497)
. .+..+-++.++. .-+|.+| +|+
T Consensus 150 ~---divt~~~~~~~~-~rviG~c~~~~ 173 (431)
T PRK15076 150 M---AMNTWAMNRYPG-IKTVGLCHSVQ 173 (431)
T ss_pred H---HHHHHHHhcCCC-CCEEEECCCHH
Confidence 6 333334445543 4477887 664
No 88
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.72 E-value=0.52 Score=48.69 Aligned_cols=83 Identities=16% Similarity=0.267 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-.|++..++-.+.+|+..+++++|.|. -|.-+|.+|.. .| ..+.+++++
T Consensus 144 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVtv~hs~-------------- 197 (287)
T PRK14176 144 VPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RN-------ATVSVCHVF-------------- 197 (287)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CEEEEEecc--------------
Confidence 4578899999999999999999999999998 99999999864 24 346677643
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.+++ +|++|-..|.++.++.++|+
T Consensus 198 ----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 ----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247777877 99999999999999999886
No 89
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.68 E-value=0.49 Score=49.17 Aligned_cols=91 Identities=13% Similarity=0.276 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhc
Q 010939 218 SVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 296 (497)
Q Consensus 218 ~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k 296 (497)
-+|-+|++.=++-.|.+|+.++|+|+|.| .-|..+|.+|... | ..+++++++ .
T Consensus 140 PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t------ 193 (301)
T PRK14194 140 PCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S------ 193 (301)
T ss_pred CCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C------
Confidence 46788889999999999999999999996 9999999999753 6 457777654 0
Q ss_pred hhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecC
Q 010939 297 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 297 ~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLS 352 (497)
.++.|+++. +|++|=.-+.++.+++++++ +.-||.=.|
T Consensus 194 ----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 ----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred ----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168888988 99999988888888888843 445555555
No 90
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.67 E-value=0.6 Score=48.75 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=68.9
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc--cCCCCCHHH
Q 010939 235 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVD 311 (497)
Q Consensus 235 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~--~~~~~~L~e 311 (497)
++-.||+|.|| |.-|..+|..|.. .|+ ...+.++|.+ . .++-.-+|.+... ...- .....+..+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~-~~g~a~Dl~~~~~-~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-G-APGVAADLSHIDT-PAKVTGYADGELWEK 72 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-C-CcccccchhhcCc-CceEEEecCCCchHH
Confidence 44569999999 9999999987752 243 3679999993 2 1211112322111 1110 111133478
Q ss_pred HHhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCC
Q 010939 312 AVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 312 ~v~~vkptvLIG~S~~~g~--------------Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
++++ .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 73 ~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 73 ALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 8988 9988755554322 4468899999999999999999998
No 91
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.47 E-value=0.6 Score=48.39 Aligned_cols=117 Identities=13% Similarity=0.167 Sum_probs=69.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhc
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH 301 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~ 301 (497)
+|.+++...... ...+++++|+|..|...+..+... .++ ++++++++. ..+ .......+.+
T Consensus 116 ~~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~ 176 (326)
T TIGR02992 116 AGAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSS 176 (326)
T ss_pred HHHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHh
Confidence 345555555432 346899999999999988877643 244 679988874 222 1122222211
Q ss_pred c----cCCCCCHHHHHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHHHH
Q 010939 302 E----HEPVKELVDAVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 365 (497)
Q Consensus 302 ~----~~~~~~L~e~v~~vkptvLIG~S~~-~g~Fteevi~~Ma~~~~rPIIFaLSNPt-~~~E~~peda 365 (497)
. .....++.++++. .|++|-++.. ..+|+.++++. .-.|.++.--+ .+-|+.|+-.
T Consensus 177 ~~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 177 LLGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred hcCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHHH
Confidence 1 1123689999986 9999977543 24677777652 22444444322 2578877653
No 92
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.39 E-value=1.7 Score=42.95 Aligned_cols=121 Identities=12% Similarity=0.177 Sum_probs=71.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 317 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 317 (497)
.||.|+|+|.-|..++..+... |. ...+++++|++. +.....+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999988653 53 125688887641 1111111111 01122567777765
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcccc
Q 010939 318 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEY 386 (497)
Q Consensus 318 ptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~pv~~ 386 (497)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|....+=+...-|..|..+
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~~ 123 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPALV 123 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHHH
Confidence 78776 44443 45778888887654 458899999773 3344445431222333456555443
No 93
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.29 E-value=0.96 Score=47.13 Aligned_cols=94 Identities=13% Similarity=0.209 Sum_probs=64.0
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHH
Q 010939 232 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 311 (497)
Q Consensus 232 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 311 (497)
+..|.+++|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . ... ..++ ....+|.|
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~~~l~e 196 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYKDTIEE 196 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---cccCCHHH
Confidence 4568999999999999999999999533 253 688888752 1 001 1111 12358999
Q ss_pred HHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCceEEecCCC
Q 010939 312 AVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNP 354 (497)
Q Consensus 312 ~v~~vkptvLIG~S----~~~g~Fteevi~~Ma~~~~rPIIFaLSNP 354 (497)
+++. .|+++=.- ...++|+++.++.|. +..++.=.|.=
T Consensus 197 ll~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sRG 238 (332)
T PRK08605 197 AVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCARG 238 (332)
T ss_pred HHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCCC
Confidence 9987 89888542 123577888888885 66777766663
No 94
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.28 E-value=1.1 Score=47.90 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=81.8
Q ss_pred CCCCceecCc---cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 010939 204 TTHLVFNDDI---QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 280 (497)
Q Consensus 204 ~~~~~FnDDi---QGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~ 280 (497)
..|.+.|--- +..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|+
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 3455555322 2234457899999999999999999999999999999999998653 75 5778886
Q ss_pred CCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEc-c-------CCCCCCCHHHHHHHHccCCCceEEecC
Q 010939 281 KGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT-S-------GQGRTFTKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 281 ~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~-S-------~~~g~Fteevi~~Ma~~~~rPIIFaLS 352 (497)
.. . . . . ......+|.|+++. .|+++=. . ...++|+++.+..|. +..++.=.|
T Consensus 148 ~~----~--~-~-~-------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~a 207 (381)
T PRK00257 148 PR----Q--E-A-E-------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINAS 207 (381)
T ss_pred cc----c--c-c-c-------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECC
Confidence 31 0 0 0 0 01123579998886 8877611 1 123789999999996 677887666
Q ss_pred C
Q 010939 353 N 353 (497)
Q Consensus 353 N 353 (497)
.
T Consensus 208 R 208 (381)
T PRK00257 208 R 208 (381)
T ss_pred C
Confidence 5
No 95
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.27 E-value=0.44 Score=45.13 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=28.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||+++|+|..|..||+.|+.+ |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999997
No 96
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.26 E-value=0.32 Score=49.56 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=42.9
Q ss_pred CCCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 205 THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 205 ~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++.=+|-| ..|++.+++..+..+++++++|+|||-+|.+|+..+.. .|. ++|+++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34455666 45677888877778889999999999777777666654 374 679999885
No 97
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.18 E-value=0.6 Score=48.69 Aligned_cols=120 Identities=20% Similarity=0.184 Sum_probs=75.2
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc--ccCCCccCCchhchhhhcccCCCCCHHHHHhc
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 315 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL--i~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 315 (497)
||.|.|| |..|..+|..|+. .|+-.|+-...+.++|.+.- ..++..-+|.+..-++.+...-..+..|++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 8999999 9999999987764 36533223347999998741 11221112433332332221111467788988
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCceEEecCCCCCCCCCCHHHHhcc
Q 010939 316 IKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTW 368 (497)
Q Consensus 316 vkptvLIG~S~~~g~--Ft------------eevi~~Ma~~~-~rPIIFaLSNPt~~~E~~peda~~~ 368 (497)
.|++|=+.+.+.- -| +++.+.|.+++ +.-||+--|||. .+..--++++
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~ 139 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA---NTNALIALKN 139 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH---HHHHHHHHHH
Confidence 8988855554321 23 57788888994 999999999995 4444445554
No 98
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=92.18 E-value=0.87 Score=47.51 Aligned_cols=134 Identities=19% Similarity=0.224 Sum_probs=81.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhchhhhcccCCCCCHHHHHhc
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVNA 315 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 315 (497)
||.|+|| |.-|..+|..|+.. |+-.-+..-.+.++|.+.-. .++..-+|.+...++.......++..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 99999999888652 54210000169999984321 1111112443332332111111356788887
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHcc-CCCceEEecCCCCCCCCCCHHHHhccccC--cEEEecC
Q 010939 316 IKPTILIGTSGQGRT--FT------------KEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASG 378 (497)
Q Consensus 316 vkptvLIG~S~~~g~--Ft------------eevi~~Ma~~-~~rPIIFaLSNPt~~~E~~peda~~~t~G--rai~AsG 378 (497)
.|++|=+.+.+.- -| +++.+.|.++ ++.-||+-.|||. .+..--+++++++ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 8998866555421 11 4678888899 4999999999995 6666666676633 2277887
Q ss_pred CCCC
Q 010939 379 SPFD 382 (497)
Q Consensus 379 sPf~ 382 (497)
+-.+
T Consensus 151 t~LD 154 (324)
T TIGR01758 151 TRLD 154 (324)
T ss_pred eehH
Confidence 5443
No 99
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.14 E-value=0.51 Score=47.14 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=34.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+|++.||+++|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 468999999999999999999999875 76 799999998
No 100
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=92.09 E-value=4.5 Score=43.87 Aligned_cols=187 Identities=22% Similarity=0.220 Sum_probs=126.6
Q ss_pred CcchhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcH--HHHHHHHcCC-----CCce----------ecCccchhHHH
Q 010939 158 RAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNA--FDLLEKYGTT-----HLVF----------NDDIQGTASVV 220 (497)
Q Consensus 158 R~~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~a--f~iL~ryr~~-----~~~F----------nDDiQGTa~V~ 220 (497)
..+..|-..|...|++++.+.-||+.-|-=+|++..-. --+.+.|+.- .++| .+----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 36778888999999999999999999999999986321 2256677531 1111 23333444222
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhh
Q 010939 221 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 300 (497)
Q Consensus 221 lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a 300 (497)
.-+.-.|++..|.+|+..||.|-|-|..|.-.|+.+.+. |- |=+-+=|++|-|++.. .|+..+....
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 233338888889899999999999999999999888653 63 5567779999988873 4664443322
Q ss_pred cc----------cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC-CCCCCCCCHHHHhc
Q 010939 301 HE----------HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 367 (497)
Q Consensus 301 ~~----------~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN-Pt~~~E~~peda~~ 367 (497)
++ .+.+.+ |.+=.+..|||+=+..+ +.+|++-.+...+. +|.=-+| ||+ ..+++.+.
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~~-n~I~~~na~~l~ak----~V~EgAN~P~t---~eA~~i~~ 325 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCALE-NVITEDNADQLKAK----IVVEGANGPTT---PEADEILL 325 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEcccccc-cccchhhHHHhhhc----EEEeccCCCCC---HHHHHHHH
Confidence 21 011122 33334678999976664 68999999888532 8888888 763 33445544
No 101
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.07 E-value=0.21 Score=52.32 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=34.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+-
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCc
Confidence 568899999999999999999999764 76 7999999963
No 102
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.07 E-value=0.36 Score=48.73 Aligned_cols=32 Identities=38% Similarity=0.574 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+||.|+|+|.-|.+||..+... | .+++++|++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999988753 5 468888875
No 103
>PLN02928 oxidoreductase family protein
Probab=92.03 E-value=1.3 Score=46.67 Aligned_cols=140 Identities=12% Similarity=0.166 Sum_probs=85.5
Q ss_pred cchhHHHHHHHHHHHHH----------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 010939 214 QGTASVVLAGLISAMKF----------------LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 277 (497)
Q Consensus 214 QGTa~V~lAgll~Al~~----------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~ 277 (497)
+.+|--+++.+|+.+|- .+..|.+.++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34555666666666653 24579999999999999999999998643 64 6888
Q ss_pred EccCCcccCCCccCC--ch-hchhhhcccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCceEEe
Q 010939 278 VDSKGLIVSSRLESL--QH-FKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFS 350 (497)
Q Consensus 278 vD~~GLi~~~r~~~l--~~-~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Fteevi~~Ma~~~~rPIIFa 350 (497)
+|+.. .......+ +. .-..+........+|.|+++. .|+++-.- ...++|+++.+..|. +..++.=
T Consensus 188 ~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lIN 260 (347)
T PLN02928 188 TRRSW--TSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLVN 260 (347)
T ss_pred ECCCC--ChhhhhhhccccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEEE
Confidence 88752 11000000 00 000111111134689999988 99998652 224799999999995 5667776
Q ss_pred cCCCCCCCCCCHHHHh-c-cccCcEEEe
Q 010939 351 LSNPTSQSECTAEEAY-T-WSQGRAIFA 376 (497)
Q Consensus 351 LSNPt~~~E~~peda~-~-~t~Grai~A 376 (497)
.|.- ++--|+|+ + ...|+.-.|
T Consensus 261 vaRG----~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 261 IARG----GLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred CCCc----cccCHHHHHHHHHcCCeeEE
Confidence 6653 33333333 1 135665443
No 104
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=92.01 E-value=0.38 Score=48.59 Aligned_cols=50 Identities=28% Similarity=0.399 Sum_probs=39.7
Q ss_pred HHHHHHHHHH-hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 221 LAGLISAMKF-LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 221 lAgll~Al~~-~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
-.|++++++. .+.++++.+++++|||.+|-+++..|.. .|+ +++++++|.
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~ 156 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 4567777774 5678999999999999998888888764 364 689999885
No 105
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.72 E-value=1.4 Score=44.97 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=27.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..||.|+|+|.-|.++|..|... | .++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 45899999999999999999764 5 357777775
No 106
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.67 E-value=0.34 Score=49.46 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+|.|+|+|.-|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999998763 63 68888875
No 107
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.60 E-value=0.49 Score=49.82 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=66.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCC-c-------cCCchhchhhhcc--
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR-L-------ESLQHFKKPWAHE-- 302 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r-~-------~~l~~~k~~~a~~-- 302 (497)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+= |..+. . +++-..|..-|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 91 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDT-VDLSNLHRQVIHSTAGVGQPKAESAREAM 91 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-EcccccccCcccChhHCCChHHHHHHHHH
Confidence 468899999999999999999998764 86 7899999983 22211 0 0111122222211
Q ss_pred ---cCC---------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010939 303 ---HEP---------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 303 ---~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
.+. + .++.+.++. .|++|-++.. .=++.++..++.....|.|++-+.
T Consensus 92 ~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~~~ 152 (355)
T PRK05597 92 LALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSDN--FDTRHLASWAAARLGIPHVWASIL 152 (355)
T ss_pred HHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEEe
Confidence 011 1 234556655 7888876643 345567777887788888887554
No 108
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.50 E-value=0.77 Score=46.60 Aligned_cols=32 Identities=38% Similarity=0.672 Sum_probs=26.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+||.|+|+|.-|.+||..+... |. +++++|++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 4799999999999999998653 63 68888864
No 109
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.49 E-value=1.2 Score=46.55 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=74.2
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhchhhhcccCCCCCHHHHHhc
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVNA 315 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 315 (497)
||+|.|| |.-|..++..|+.. |+-..+...++.++|.+.-. ..+..-++.+..-++..+.....++.+++++
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC
Confidence 7999999 99999999988752 44210111379999986421 1111111222111221111112678899987
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCceEEecCCCCCCCCCCHHHHhccc
Q 010939 316 IKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWS 369 (497)
Q Consensus 316 vkptvLIG~S~~~g~--Ft------------eevi~~Ma~~~-~rPIIFaLSNPt~~~E~~peda~~~t 369 (497)
+|++|=+.+.+.- .| +++.+.|.+++ ..-||+-.|||. .....-+++++
T Consensus 79 --aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~ 142 (325)
T cd01336 79 --VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYA 142 (325)
T ss_pred --CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 9999866655421 23 56778888885 689999999995 55555666664
No 110
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=91.42 E-value=0.45 Score=49.00 Aligned_cols=48 Identities=33% Similarity=0.511 Sum_probs=39.2
Q ss_pred HHHHHHHHhC--CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 223 GLISAMKFLG--GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 223 gll~Al~~~g--~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
|+..+|+-.+ .+.+++++|++|||-|+.+|+-.|.+. |. ++|++++|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 5677888765 456689999999999999999888764 75 789999984
No 111
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.32 E-value=0.68 Score=43.64 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=66.9
Q ss_pred HHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCC
Q 010939 228 MKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVK 307 (497)
Q Consensus 228 l~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~ 307 (497)
.+..+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34567889999999999999999999999743 64 6888888622 100 1111111236
Q ss_pred CHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCceEEecCCC
Q 010939 308 ELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNP 354 (497)
Q Consensus 308 ~L~e~v~~vkptvLIG~S----~~~g~Fteevi~~Ma~~~~rPIIFaLSNP 354 (497)
+|.|+++. .|+++=.- ...+.|+++.++.|. +.-++.-.|.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aRG 129 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVARG 129 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSSG
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccch
Confidence 89999988 89888432 124799999999996 56677665553
No 112
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=91.25 E-value=1.9 Score=46.22 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=78.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 214 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 214 QGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
+..|=-+++.+++..|-.|..|.+.++.|+|.|..|..+|+.+... |+ ++..+|+. +.+ .
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~ 152 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--R 152 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--c
Confidence 3455567889999888889999999999999999999999999653 75 67778853 111 0
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEE---ccC-----CCCCCCHHHHHHHHccCCCceEEecCC
Q 010939 294 HFKKPWAHEHEPVKELVDAVNAIKPTILIG---TSG-----QGRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 294 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG---~S~-----~~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
. ......+|.|+++. .|+++= +.. .-++|+++.++.|. +..|+.=.|.
T Consensus 153 ~-------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR 208 (378)
T PRK15438 153 G-------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR 208 (378)
T ss_pred c-------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC
Confidence 0 00123579999877 898871 111 23689999999996 6778886665
No 113
>PRK14851 hypothetical protein; Provisional
Probab=90.97 E-value=1 Score=51.69 Aligned_cols=122 Identities=12% Similarity=0.126 Sum_probs=80.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCc-------cCCchhchhhhcc---
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL-------ESLQHFKKPWAHE--- 302 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~-------~~l~~~k~~~a~~--- 302 (497)
++|++.||+|+|+|..|..+|..|+.+ |+ ++|.++|-+=+-..+-. +++-..|..-+++
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 568999999999999999999999875 86 89999998733221110 1122223222221
Q ss_pred --cC---------CC--CCHHHHHhccCCcEEEEccCCCCCC-CHHHHHHHHccCCCceEEecC----------CCCCCC
Q 010939 303 --HE---------PV--KELVDAVNAIKPTILIGTSGQGRTF-TKEVVEAMASLNEKPIIFSLS----------NPTSQS 358 (497)
Q Consensus 303 --~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~F-teevi~~Ma~~~~rPIIFaLS----------NPt~~~ 358 (497)
.+ .+ .++.+.+++ .|++|-...-. .| ++..|...+..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 11 11 256677776 89999554321 12 345677778888999999754 675
Q ss_pred CCCHHHHhccccC
Q 010939 359 ECTAEEAYTWSQG 371 (497)
Q Consensus 359 E~~peda~~~t~G 371 (497)
....++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5777888888766
No 114
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.93 E-value=0.92 Score=46.84 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-+|++.=++-.+.+++..+++|+|. |.-|.-+|.+|... |. .+.++.++ .
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~-------t------ 192 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR-------T------ 192 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------C------
Confidence 45678888999999999999999999999 99999999999753 63 34544221 1
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|-.-+.++.+++++++
T Consensus 193 -----------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 193 -----------RNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred -----------CCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 258888988 99999999999999988853
No 115
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.92 E-value=1.8 Score=45.40 Aligned_cols=99 Identities=24% Similarity=0.235 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHH------------------HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 010939 217 ASVVLAGLISAMK------------------FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 278 (497)
Q Consensus 217 a~V~lAgll~Al~------------------~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~v 278 (497)
|=-+++.+|+..| ..|..|.++++-|+|.|..|..+|+.+... |+ ++..+
T Consensus 104 AE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af-----gm-------~v~~~ 171 (324)
T COG0111 104 AELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF-----GM-------KVIGY 171 (324)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEE
Confidence 3446777777777 567789999999999999999999999664 65 67778
Q ss_pred ccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHH
Q 010939 279 DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMA 340 (497)
Q Consensus 279 D~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Fteevi~~Ma 340 (497)
|+. ..+. . .-........+|.|.++. .|++.-.- ..-|.++++-+..|.
T Consensus 172 d~~----~~~~--~-----~~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 172 DPY----SPRE--R-----AGVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred CCC----Cchh--h-----hccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 873 1110 0 000111234679999987 99988542 223789999999993
No 116
>PRK07411 hypothetical protein; Validated
Probab=90.82 E-value=0.57 Score=49.98 Aligned_cols=102 Identities=19% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCC-c-------cCCchhchhhhcc--
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR-L-------ESLQHFKKPWAHE-- 302 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r-~-------~~l~~~k~~~a~~-- 302 (497)
.+|++.||+++|+|.-|.-+|..|+.+ |+ ++|.++|.+ .+..+. . +++-..|..-|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D-~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 101 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD-VVDSSNLQRQVIHGTSWVGKPKIESAKNRI 101 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC-EecccccCcCcccChHHCCCcHHHHHHHHH
Confidence 568899999999999999999999875 86 899999987 222211 0 0111112222211
Q ss_pred ---cCC---------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEe
Q 010939 303 ---HEP---------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 350 (497)
Q Consensus 303 ---~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFa 350 (497)
.+. + .+..+.++. .|++|-+... .=++.+|..++.....|.|++
T Consensus 102 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 102 LEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDN--FPTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 111 1 134455655 7888876653 236677888887778888864
No 117
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.77 E-value=1 Score=46.38 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 010939 216 TASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 294 (497)
Q Consensus 216 Ta~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~ 294 (497)
-.-+|-+|++.=++-.+.+|+.+++|++|-+ ..|.-+|.+|.. .|. .+.+++++ |
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~---T--------- 191 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF---T--------- 191 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---C---------
Confidence 3456888899999999999999999999998 889999998864 242 34555442 1
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 295 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 295 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|-..+.++.++.++|+
T Consensus 192 ------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 ------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred ------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 236677887 99999999999999999997
No 118
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.65 E-value=1.1 Score=46.30 Aligned_cols=83 Identities=19% Similarity=0.323 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-.|++.-++-.+.+++..+++++|.+ .-|.-+|.||.. .| ..+++|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~-------------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK-------------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC--------------
Confidence 456888899999999999999999999975 468888888754 24 346666542
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|...+.++.|++++|+
T Consensus 192 ----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358888888 99999999999999999995
No 119
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.43 E-value=0.77 Score=48.97 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCC-c-------cCCchhchhhhcc--
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR-L-------ESLQHFKKPWAHE-- 302 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r-~-------~~l~~~k~~~a~~-- 302 (497)
++|++.||+++|+|.-|.-+|..|+.+ |+ ++|.++|.+ .|..+. . +++-..|..-|++
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D-~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD-VVDESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC-EecCcccccccccChhcCCChHHHHHHHHH
Confidence 568899999999999999999999875 86 789999987 222111 0 0111122222211
Q ss_pred ---cC---------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecC
Q 010939 303 ---HE---------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 303 ---~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLS 352 (497)
.+ .+ .++.+.++. .|++|-++.. .=++-++..++..+..|.|++-+
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~~~ 165 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDN--FATRYLVNDAAVLAGKPYVWGSI 165 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEe
Confidence 01 11 234566665 7888876543 22455677777777888887643
No 120
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.38 E-value=0.96 Score=46.75 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-+|++.=|+-.+.+++.+++|++|.+. -|.-+|.||... |.- ....+.+++++.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~~---~~AtVt~~hs~t------------- 195 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GKF---ANATVTVCHSRT------------- 195 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----ccc---CCCEEEEEeCCc-------------
Confidence 4567889999999999999999999999764 677888777531 100 013455555431
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|+..+.++.+++++|+
T Consensus 196 -----------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 196 -----------PDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -----------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 358888988 99999999999999999994
No 121
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.22 E-value=0.18 Score=47.19 Aligned_cols=90 Identities=21% Similarity=0.359 Sum_probs=50.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-Cccc-----------CCCccCCchhchhhhcc
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIV-----------SSRLESLQHFKKPWAHE 302 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~-GLi~-----------~~r~~~l~~~k~~~a~~ 302 (497)
+...||||.|+|.+|.|.++++... |. ++...|.. ..+. ....+.+.. +.|++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 5668999999999999999998763 63 45555553 0000 000000000 002221
Q ss_pred ----cCC--CCCHHHHHhccCCcEEEEc-----cCCCCCCCHHHHHHHH
Q 010939 303 ----HEP--VKELVDAVNAIKPTILIGT-----SGQGRTFTKEVVEAMA 340 (497)
Q Consensus 303 ----~~~--~~~L~e~v~~vkptvLIG~-----S~~~g~Fteevi~~Ma 340 (497)
.+. ...|.+.++. .|++|+. ...+.++|++.++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 111 1468888887 8999974 3445689999999995
No 122
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.21 E-value=0.73 Score=47.49 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=74.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccC---CCCCHHHHHh
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---PVKELVDAVN 314 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~---~~~~L~e~v~ 314 (497)
.||.|+|+|.-|.++|-.++.. |+ + ++.++|..--+.+++..++.+ ...+..... ...++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 4899999999999999988652 54 1 599999832222211000110 000000001 1256766 66
Q ss_pred ccCCcEEEEccCCC---C-C------CC----HHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccC--cEEEecC
Q 010939 315 AIKPTILIGTSGQG---R-T------FT----KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASG 378 (497)
Q Consensus 315 ~vkptvLIG~S~~~---g-~------Ft----eevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~G--rai~AsG 378 (497)
+ .|++|=+.+.+ | . ++ +++++.|.+++.+.+|+-.|||. .+...-++++++- +-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 5 88887554432 1 1 22 45667788899999999999996 5666666666421 2377777
Q ss_pred C
Q 010939 379 S 379 (497)
Q Consensus 379 s 379 (497)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 123
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=90.16 E-value=0.66 Score=44.96 Aligned_cols=109 Identities=17% Similarity=0.310 Sum_probs=68.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc-CC-----CCCHHHH
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP-----VKELVDA 312 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~-----~~~L~e~ 312 (497)
||+|+||||+-. ..++...+.+...++ ...|+|+|.+ ..|-+.+...-+.++++. .+ .+++.||
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 799999999854 445555555544553 4689999986 233221222233333321 12 2689999
Q ss_pred HhccCCcEEEEccCCC----------------------------CCCC--------HHHHHHHHccCCCceEEecCCCCC
Q 010939 313 VNAIKPTILIGTSGQG----------------------------RTFT--------KEVVEAMASLNEKPIIFSLSNPTS 356 (497)
Q Consensus 313 v~~vkptvLIG~S~~~----------------------------g~Ft--------eevi~~Ma~~~~rPIIFaLSNPt~ 356 (497)
+++ +|.+|=.-.+| |.|. .|+.+.|.+.|++--++=.|||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 998 89887443333 2221 38899999999999999999998
Q ss_pred CCCCC
Q 010939 357 QSECT 361 (497)
Q Consensus 357 ~~E~~ 361 (497)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 4444
No 124
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.04 E-value=1.3 Score=46.07 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=68.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccC--CCCCHHHHHhc
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE--PVKELVDAVNA 315 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~--~~~~L~e~v~~ 315 (497)
||.|+|| |.-|..+|-.|+. .|+ ...+.|+|.+ ..++-.-+|.+.. .+.+-.. ..+++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~--~a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV--NTPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC--ccceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987753 365 3679999998 2333222244332 1111111 11356788888
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHccCCCceEEecCCCC
Q 010939 316 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 316 vkptvLIG~S~~~---g~-----------Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
.|++|=+.+.+ |- .-+++++.+.+++...+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99888565553 21 2246778888999999999999996
No 125
>PRK08291 ectoine utilization protein EutC; Validated
Probab=89.89 E-value=1.2 Score=46.13 Aligned_cols=118 Identities=15% Similarity=0.228 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhh
Q 010939 221 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 300 (497)
Q Consensus 221 lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a 300 (497)
.+|.+++.....+ ..++++++|+|..|..++..+... .++ +++.++|+. ..+ .......+.
T Consensus 118 a~~~~a~~~la~~--~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~ 178 (330)
T PRK08291 118 AAGAVAARHLARE--DASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLR 178 (330)
T ss_pred HHHHHHHHHhCCC--CCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHh
Confidence 3455566555422 346999999999988887766542 243 678888774 222 222222221
Q ss_pred cc----cCCCCCHHHHHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCceEEec-CCCCCCCCCCHHHH
Q 010939 301 HE----HEPVKELVDAVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEA 365 (497)
Q Consensus 301 ~~----~~~~~~L~e~v~~vkptvLIG~S~~-~g~Fteevi~~Ma~~~~rPIIFaL-SNPt~~~E~~peda 365 (497)
+. -....++.++++. +|++|-++.. ..+|+.++++. .--|.++ |+-..+-|+.|+-.
T Consensus 179 ~~~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~l 241 (330)
T PRK08291 179 AELGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAVF 241 (330)
T ss_pred hccCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHHH
Confidence 11 1123688999986 8999876433 34677777653 1123333 44334578888763
No 126
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=89.81 E-value=0.94 Score=49.29 Aligned_cols=129 Identities=15% Similarity=0.226 Sum_probs=75.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh-cCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-cCC-----CCCHH
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQ-TNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 310 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~-~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~-----~~~L~ 310 (497)
.||+|+||||+ -...|+..+.+. ..++ ...|+|+|-+. +|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 555565655443 2342 47899999763 3322122222222222 112 25899
Q ss_pred HHHhccCCcEEEEccC--------------------------CCCCC--------CHHHHHHHHccCCCceEEecCCCCC
Q 010939 311 DAVNAIKPTILIGTSG--------------------------QGRTF--------TKEVVEAMASLNEKPIIFSLSNPTS 356 (497)
Q Consensus 311 e~v~~vkptvLIG~S~--------------------------~~g~F--------teevi~~Ma~~~~rPIIFaLSNPt~ 356 (497)
||+++ +|.+|=.-. .||.| =.++++.|.+.|..-+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99988 777663322 22322 248889999999999999999998
Q ss_pred CCCCCHHHHhccccCcEEEecCCCC
Q 010939 357 QSECTAEEAYTWSQGRAIFASGSPF 381 (497)
Q Consensus 357 ~~E~~peda~~~t~Grai~AsGsPf 381 (497)
..+|-.---.++.-|+|=-+-+|+
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~ 170 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPI 170 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHH
Confidence 333322211133345544444454
No 127
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.69 E-value=1.5 Score=42.53 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=60.1
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-c----CCCCCHHHH
Q 010939 239 RFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-H----EPVKELVDA 312 (497)
Q Consensus 239 riv~~G-AGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~----~~~~~L~e~ 312 (497)
||.|+| +|.-|..+|..|.+. | .+++++|+. .++.+.+.......... . ....+..|+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea 65 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEKAEEAAAKALEELGHGGSDIKVTGADNAEA 65 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHHHHHHHHHHHhhccccCCCceEEEeChHHH
Confidence 799997 899999999999753 5 467777764 11111111100001010 0 011366788
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCC
Q 010939 313 VNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ 357 (497)
Q Consensus 313 v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~ 357 (497)
++. +|++| ++..+ -..+++++.++..-...+|+.++||...
T Consensus 66 ~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 66 AKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred Hhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 876 88776 44443 3457888888755445799999999753
No 128
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.58 E-value=1.9 Score=44.64 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhc
Q 010939 218 SVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 296 (497)
Q Consensus 218 ~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k 296 (497)
-+|-.|++.=++-.+.+|+.+++|++|.+ .-|.-+|.||.. .| ..+++|+++
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 35677888888899999999999999975 468888888754 24 346666653
Q ss_pred hhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 297 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 297 ~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1347777887 99999999999999999996
No 129
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.56 E-value=0.39 Score=46.63 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=65.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc--CCCCCHH
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELV 310 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~ 310 (497)
.+|++.||+++|+|.-|.+||..|+.+ |+ +++.++|.+=+ .. .+|+-+. .+..+- +....+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~Rq~-~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP---SNLNRQQ-YKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc---ccccccc-CChhhCCCHHHHHHH
Confidence 458899999999999999999999764 76 78999999822 22 1243321 111110 1113466
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE-ecCCCCCCCCC
Q 010939 311 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPTSQSEC 360 (497)
Q Consensus 311 e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIF-aLSNPt~~~E~ 360 (497)
+.++.+.|++-|-.-. .-++++-+...-+ .--+|+ +.-||..+.+.
T Consensus 81 ~~l~~inp~~~i~~~~--~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEAYD--EKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEEee--eeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 7777777876544322 2466666555432 233444 55666655443
No 130
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=89.56 E-value=0.82 Score=46.61 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.|++.+++..+.+. +.+++++|||-|+.+|+-.|.+ .|. +++++++|.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45677777666654 4599999999999999887764 365 679999985
No 131
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=89.41 E-value=2.3 Score=44.33 Aligned_cols=126 Identities=22% Similarity=0.305 Sum_probs=76.8
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc--CCCCCHHHHHhc
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 315 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~e~v~~ 315 (497)
||.|+|| |.-|..+|-+|+. .|+ ...+.++|.+. ..+-.-+|.+.. ...+-. ...+++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999998754 254 26799999876 222211244322 101101 011246788888
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCCC-CCCCCHHHHhccccC--cEEEecC
Q 010939 316 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTS-QSECTAEEAYTWSQG--RAIFASG 378 (497)
Q Consensus 316 vkptvLIG~S~~~g~--------------Fteevi~~Ma~~~~rPIIFaLSNPt~-~~E~~peda~~~t~G--rai~AsG 378 (497)
.|++|=+.+.+.. .=+++.+.+.+++..-||+-.|||.. ++.+...-++++++= +-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 9988855554321 11467778888999999999999972 122244455554311 1266665
Q ss_pred C
Q 010939 379 S 379 (497)
Q Consensus 379 s 379 (497)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 3
No 132
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=89.33 E-value=1.9 Score=40.84 Aligned_cols=82 Identities=16% Similarity=0.332 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhc
Q 010939 218 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 296 (497)
Q Consensus 218 ~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k 296 (497)
-+|-.|++.-++-.+.+|+..+++++|.+. -|.-++.||.. +|. .+.+++++ |
T Consensus 17 PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~a-------tVt~~h~~---T----------- 70 (160)
T PF02882_consen 17 PCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KGA-------TVTICHSK---T----------- 70 (160)
T ss_dssp -HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TT---S-----------
T ss_pred CCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CCC-------eEEeccCC---C-----------
Confidence 468888999999999999999999999985 88888888765 242 34555543 1
Q ss_pred hhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 297 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 297 ~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|-..+.++.++.++||
T Consensus 71 ----------~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 71 ----------KNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ----------SSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ----------Ccccceeee--ccEEeeeecccccccccccc
Confidence 346677776 99999999999999999886
No 133
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.29 E-value=1.4 Score=45.63 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhc
Q 010939 218 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 296 (497)
Q Consensus 218 ~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k 296 (497)
-+|-+|++.=++..+.+++.+++|++|.+. -|.-+|.||.+.+.+ .| ..+.++.++
T Consensus 140 PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~--------------- 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA--------------- 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC---------------
Confidence 457778899999999999999999999764 688888888653211 12 245554432
Q ss_pred hhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 297 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 297 ~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 197 ---------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ---------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ---------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1347888988 99999999999999999994
No 134
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.80 E-value=0.42 Score=46.19 Aligned_cols=77 Identities=16% Similarity=0.322 Sum_probs=53.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-c---CCCCC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-H---EPVKE 308 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~---~~~~~ 308 (497)
+.|++.||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+- +... +|+. +.|... + +....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999875 86 8999999983 2221 2332 112221 1 11245
Q ss_pred HHHHHhccCCcEEEEccC
Q 010939 309 LVDAVNAIKPTILIGTSG 326 (497)
Q Consensus 309 L~e~v~~vkptvLIG~S~ 326 (497)
+.+.++...|++-|=...
T Consensus 80 ~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 80 SLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHHHHHHCCCCEEEEEe
Confidence 778888889998775543
No 135
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.77 E-value=1.2 Score=43.38 Aligned_cols=118 Identities=12% Similarity=0.181 Sum_probs=67.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhc
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 315 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 315 (497)
++.||.|+|+|..|..++..+... |.. -.++++++++. + .+.+...+.+|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457999999999999999888642 320 12346656542 0 011222222221 1123578888875
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccc-CcEEEecC
Q 010939 316 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ-GRAIFASG 378 (497)
Q Consensus 316 vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~-Grai~AsG 378 (497)
.|++| ++.++. .-+++++.++.+.+..+|+.++.-. +.+..-+|.+ ++.++-++
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi-----~~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI-----GPSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC-----CHHHHHHHcCCCCeEEEEC
Confidence 78777 555544 4488999888654455777777665 3334444443 23444454
No 136
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.74 E-value=1.8 Score=43.36 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=57.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCC-CccCCch--hchhhhcccCCCCCHHHHHhc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-RLESLQH--FKKPWAHEHEPVKELVDAVNA 315 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~-r~~~l~~--~k~~~a~~~~~~~~L~e~v~~ 315 (497)
||.|+|+|+-|..+|..|... | .+++++++ +--.+. +...+.- .....-.+.....+..++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 799999999999999998753 5 46888887 211000 0000100 000000001113456665544
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010939 316 IKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 355 (497)
Q Consensus 316 vkptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSNPt 355 (497)
+|++|=+.-. -..+++++.++.+ .++.+|+.+.|.-
T Consensus 69 --~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~ 105 (305)
T PRK12921 69 --FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGI 105 (305)
T ss_pred --CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCC
Confidence 7766633222 2578999998864 4556788899986
No 137
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.74 E-value=1.5 Score=44.74 Aligned_cols=98 Identities=14% Similarity=0.207 Sum_probs=63.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-cCCCCCHHHHHhcc-
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI- 316 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~v- 316 (497)
||-|+|.|..|..+|..|.+. | .++.+.|+. ..+ .. .++.. .....++.|.++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~~---~~----~l~~~g~~~~~s~~~~~~~~~ 58 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QDA---VK----AMKEDRTTGVANLRELSQRLS 58 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HHH---HH----HHHHcCCcccCCHHHHHhhcC
Confidence 799999999999999988653 5 356667763 111 11 12211 11235666665543
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCCCCCCCCHH
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAE 363 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSNPt~~~E~~pe 363 (497)
++|++| ++-+.+ ..+++++.++.+ .+..||+-+||.. ++-+-+
T Consensus 59 ~~dvIi-~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 59 APRVVW-VMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCCEEE-EEcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 488887 444455 889999988866 3568999999875 444444
No 138
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.55 E-value=3.8 Score=45.87 Aligned_cols=162 Identities=22% Similarity=0.213 Sum_probs=102.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhchhhhcccCCCCCHHHHH
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAV 313 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v 313 (497)
.+--++|+|.|..|+|||.-+.. .|+ ++.|++++-+= |.+|...|=+--.+|+... +.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~-e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQY-EFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhhc-chHHHHHHH
Confidence 55679999999999999998865 487 57889887664 3444334545555665431 111133444
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccC--CCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeee
Q 010939 314 NAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 391 (497)
Q Consensus 314 ~~vkptvLIG~S~~~g~Fteevi~~Ma~~~--~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~ 391 (497)
+. .+++..+|.|+ +.|.+||..+=+
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~------------------------------------ 104 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL------------------------------------ 104 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc------------------------------------
Confidence 33 47888888774 445566655421
Q ss_pred CCCCccccccchhhhHHHHHcCC-ccc--CHHHHHHHHHHHhccCCccCCCCCCccCCCCCcchhhHHHHHHHHHHHHHc
Q 010939 392 VPGQANNAYIFPGLGLGLIMSGA-IRV--HDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYEL 468 (497)
Q Consensus 392 ~p~Q~NN~~iFPGiglG~i~~~a-~~i--td~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~AVa~~A~~~ 468 (497)
---.+++.|+.+.-.+++. +.. +..+..+++..+.-.+.++-+..+-.||.-.. .+ .+...++++.|.+.
T Consensus 105 ----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~~ 177 (532)
T COG0578 105 ----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAEH 177 (532)
T ss_pred ----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHhc
Confidence 0123478999999999994 222 12223335666666676666666788886542 21 26667888888888
Q ss_pred CC
Q 010939 469 GL 470 (497)
Q Consensus 469 Gl 470 (497)
|-
T Consensus 178 Ga 179 (532)
T COG0578 178 GA 179 (532)
T ss_pred cc
Confidence 83
No 139
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.37 E-value=1.6 Score=45.21 Aligned_cols=81 Identities=16% Similarity=0.294 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~G-AGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-.|++.=|+-.+.+++.++|+|+| .|.-|..+|.+|... |. .+++++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC-----
Confidence 3567788888889999999999999999 999999999999753 63 46666432 11
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEV 335 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteev 335 (497)
+|.|+++. +|++|-.-+.++.+++++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchhe
Confidence 36788887 999998888777777766
No 140
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.09 E-value=2.4 Score=43.65 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-+|++.=++-.+.+|+.++++++|-+ .-|.-+|.||.. .| ..+.+++++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------AtVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----EN-------ATVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456888899999999999999999999975 468888888854 24 346666653
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|-..+.++.|++++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347778887 99999999999999999996
No 141
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.04 E-value=2.8 Score=43.72 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=73.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhchhhhcccCCCCCHHHHHh
Q 010939 238 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 314 (497)
Q Consensus 238 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~ 314 (497)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.-. .++..-+|.+...++.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887764 255110011379999985422 122111243333233221111145667788
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCceEEecCCCCCCCCCCHHHHhccc
Q 010939 315 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWS 369 (497)
Q Consensus 315 ~vkptvLIG~S~~~g~--Ft------------eevi~~Ma~~~-~rPIIFaLSNPt~~~E~~peda~~~t 369 (497)
+ .|++|=+.+.+.- .| +++.+.+.+++ +.-||+-.|||. .+..--+++++
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~s 142 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC---NTNALIAMKNA 142 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 7 9999855554311 23 46777888889 499999999995 45555555544
No 142
>PLN02306 hydroxypyruvate reductase
Probab=87.93 E-value=4.3 Score=43.53 Aligned_cols=194 Identities=17% Similarity=0.217 Sum_probs=106.4
Q ss_pred CCCCceecCc---cchhHHHHHHHHHHHHH---------------------hCCCCCCceEEEeCcChHHHHHHHHHHHH
Q 010939 204 TTHLVFNDDI---QGTASVVLAGLISAMKF---------------------LGGSLADQRFLFLGAGEAGTGIAELIALE 259 (497)
Q Consensus 204 ~~~~~FnDDi---QGTa~V~lAgll~Al~~---------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~ 259 (497)
..+.+.|--- ..+|=-+++-+|+.+|- .|..|.++++.|+|.|..|..+|+++..+
T Consensus 108 ~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~ 187 (386)
T PLN02306 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (386)
T ss_pred CCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhc
Confidence 4666666421 23344456666666542 13468899999999999999999998654
Q ss_pred HHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhc--------c-c-CCCCCHHHHHhccCCcEEEEc----c
Q 010939 260 ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--------E-H-EPVKELVDAVNAIKPTILIGT----S 325 (497)
Q Consensus 260 ~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~--------~-~-~~~~~L~e~v~~vkptvLIG~----S 325 (497)
| |+ +++.+|+..- . .+......+.. + . ....+|.|+++. .|+++-. .
T Consensus 188 f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt~ 248 (386)
T PLN02306 188 F----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLDK 248 (386)
T ss_pred C----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCCh
Confidence 3 64 6888887521 0 01100001100 0 0 112589999988 9998873 2
Q ss_pred CCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHh-cc-ccCcEEEecCC-CC--CccccCCeeeCCCCccccc
Q 010939 326 GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGS-PF--DPFEYGDNVFVPGQANNAY 400 (497)
Q Consensus 326 ~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~-~~-t~Grai~AsGs-Pf--~pv~~~G~~~~p~Q~NN~~ 400 (497)
...|.|+++.++.|. +.-++.=.|. -++-=|+|+ ++ ..|+.-.| |. =| .|.. +. .--+..|..
T Consensus 249 ~T~~lin~~~l~~MK---~ga~lIN~aR----G~lVDe~AL~~AL~sg~i~gA-aLDVf~~EP~~-~~---~L~~~pNVi 316 (386)
T PLN02306 249 TTYHLINKERLALMK---KEAVLVNASR----GPVIDEVALVEHLKANPMFRV-GLDVFEDEPYM-KP---GLADMKNAV 316 (386)
T ss_pred hhhhhcCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHhCCeeEE-EEeCCCCCCCC-cc---hHhhCCCEE
Confidence 234799999999995 5556665553 344444333 21 24553322 20 00 1100 00 112456888
Q ss_pred cchhhhHHHHHcCCcccCHHHHHHHHHHHhccC
Q 010939 401 IFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 433 (497)
Q Consensus 401 iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v 433 (497)
+-|=++-....+ ...|...+++.+....
T Consensus 317 lTPHiag~T~e~-----~~~~~~~~~~ni~~~~ 344 (386)
T PLN02306 317 VVPHIASASKWT-----REGMATLAALNVLGKL 344 (386)
T ss_pred ECCccccCcHHH-----HHHHHHHHHHHHHHHH
Confidence 888876322111 2344444555555544
No 143
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.85 E-value=2.8 Score=43.33 Aligned_cols=85 Identities=18% Similarity=0.345 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-.|++.-++-.+.+|+.+++|++|.+ .-|.-+|.||..- ..| ..+.++.++
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 456888899999999999999999999975 5688888888531 013 235555543
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|-..+.++.++.++|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1358888888 99999999999999999996
No 144
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=87.65 E-value=2.9 Score=43.68 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=73.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhchhhhcccCCCCCHHHHHhc
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVNA 315 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 315 (497)
||.|+|| |..|..+|-.|+. .|+-.-+-...+.|+|.+.-. .++..-+|.+..-++.+...-..+..+.+++
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d 79 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKD 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCC
Confidence 8999998 9999999998764 255110111279999986311 1221112333322222211111456677887
Q ss_pred cCCcEEEEccCCC---CCCC------------HHHHHHHHccCC-CceEEecCCCCCCCCCCHHHHhccc
Q 010939 316 IKPTILIGTSGQG---RTFT------------KEVVEAMASLNE-KPIIFSLSNPTSQSECTAEEAYTWS 369 (497)
Q Consensus 316 vkptvLIG~S~~~---g~Ft------------eevi~~Ma~~~~-rPIIFaLSNPt~~~E~~peda~~~t 369 (497)
.|++|=+.+.+ | -| +++++.+++++. .-||+--|||. ..+.--+++++
T Consensus 80 --aDvVVitAG~~~k~g-~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 80 --VDAALLVGAFPRKPG-MERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred --CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 89988555543 2 23 367788889987 99999999995 55555566655
No 145
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.53 E-value=4.5 Score=42.23 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=83.4
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHH
Q 010939 232 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 311 (497)
Q Consensus 232 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 311 (497)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. . . .. ...+. ....+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHH
Confidence 4568999999999999999999998643 64 577888742 1 1 00 01111 12357999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCC--Cccc
Q 010939 312 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPF--DPFE 385 (497)
Q Consensus 312 ~v~~vkptvLIG~S~----~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf--~pv~ 385 (497)
+++. .|+++=.-- .-++|+++.+..|. +..++.=.|.=.---|-.-.+|+ ..|+.-.|.=-=| .|..
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aRg~~vd~~aL~~aL--~~g~i~gAaLDV~~~EP~~ 273 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTARGKVVDTKALVKAL--KEGWIAGAGLDVFEEEPYY 273 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcCchhcCHHHHHHHH--HcCCeEEEEeccCCCCCCC
Confidence 9987 898874321 13689999999995 66777766653321222222232 4566543321111 1111
Q ss_pred cCCeeeCCCCccccccchhhhHHH
Q 010939 386 YGDNVFVPGQANNAYIFPGLGLGL 409 (497)
Q Consensus 386 ~~G~~~~p~Q~NN~~iFPGiglG~ 409 (497)
+ . .--+..|..+-|=++-..
T Consensus 274 -~-~--pL~~~~nvilTPHia~~t 293 (333)
T PRK13243 274 -N-E--ELFSLKNVVLAPHIGSAT 293 (333)
T ss_pred -C-c--hhhcCCCEEECCcCCcCH
Confidence 1 1 112456888888877433
No 146
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.43 E-value=1.8 Score=43.25 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=56.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCC-ccCCchhchhhhcccCCCCCHHHHHhccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR-LESLQHFKKPWAHEHEPVKELVDAVNAIK 317 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r-~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 317 (497)
||.|+|+|+-|..+|..|.+. | .+++++|+++=-.+.- .+.+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999988753 5 4688888743111000 001100000000000112445554 4 4
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccC-CCceEEecCCCC
Q 010939 318 PTILIGTSGQGRTFTKEVVEAMASLN-EKPIIFSLSNPT 355 (497)
Q Consensus 318 ptvLIG~S~~~g~Fteevi~~Ma~~~-~rPIIFaLSNPt 355 (497)
+|++| ++... --++++++.++.+. ++-+|+.+.|.-
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 78777 44433 34789999998753 334677799975
No 147
>PRK08374 homoserine dehydrogenase; Provisional
Probab=87.40 E-value=3.3 Score=43.41 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=63.8
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch-----hchhhhccc------
Q 010939 238 QRFLFLGAGEAGTGIAELIAL---EISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-----FKKPWAHEH------ 303 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~---~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~-----~k~~~a~~~------ 303 (497)
.||.++|.|..|.+++++|.+ .+.++.|+.. +=+-+.|++|-++..+. ++. +++......
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~G--id~~~l~~~~~~~~~~~~~~~~~ 76 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPED--IDLREAKEVKENFGKLSNWGNDY 76 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCC--CChHHHHHhhhccCchhhccccc
Confidence 589999999999999999976 3433345321 22446799998877552 332 222221100
Q ss_pred C-CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010939 304 E-PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 349 (497)
Q Consensus 304 ~-~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIF 349 (497)
. ..-++.|.++...+||+|-+++.. ...++++..-+ +..++|.
T Consensus 77 ~~~~~~~~ell~~~~~DVvVd~t~~~--~a~~~~~~al~-~G~~VVt 120 (336)
T PRK08374 77 EVYNFSPEEIVEEIDADIVVDVTNDK--NAHEWHLEALK-EGKSVVT 120 (336)
T ss_pred cccCCCHHHHHhcCCCCEEEECCCcH--HHHHHHHHHHh-hCCcEEE
Confidence 0 012788888878899999998643 33344443332 4677775
No 148
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=87.22 E-value=2.7 Score=43.73 Aligned_cols=84 Identities=14% Similarity=0.254 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 010939 216 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 294 (497)
Q Consensus 216 Ta~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~ 294 (497)
-.-+|-+|++.=++-.+.+|+.+++|++|-+. -|.-+|.||.. .| ..+++++++
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 34567788899999999999999999999764 67778877754 24 357777653
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 295 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 295 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|-..+.++.++.++|+
T Consensus 201 -----------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 -----------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347788887 99999999999999999997
No 149
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=87.14 E-value=0.56 Score=45.34 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=34.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 458899999999999999999999875 86 7899999983
No 150
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.97 E-value=1.1 Score=47.09 Aligned_cols=105 Identities=23% Similarity=0.416 Sum_probs=70.9
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc----cCCCCCHH
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELV 310 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~ 310 (497)
...-|++++|.|-+|+--|++.+ |+. .++.++|.+ .+| |....-.|..+ .+....++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999988765 442 578888875 233 33333334432 12335799
Q ss_pred HHHhccCCcEEEEc-----cCCCCCCCHHHHHHHHccCCCceE----------EecCCCCCCCCCCHH
Q 010939 311 DAVNAIKPTILIGT-----SGQGRTFTKEVVEAMASLNEKPII----------FSLSNPTSQSECTAE 363 (497)
Q Consensus 311 e~v~~vkptvLIG~-----S~~~g~Fteevi~~Ma~~~~rPII----------FaLSNPt~~~E~~pe 363 (497)
|++++ .|.+||. +..|.+.|+|+++.|. +.-+| |-=|.||+..+-|.+
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk---pGsVivDVAiDqGGc~Et~~~TTh~~PtY~ 289 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK---PGSVIVDVAIDQGGCFETSHPTTHDDPTYE 289 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcC---CCcEEEEEEEcCCCceeccccccCCCCcee
Confidence 99987 9999887 4556789999999996 33343 444566655555543
No 151
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.96 E-value=1.2 Score=44.90 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=58.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCC-CccCCch--h-chhhhcccCCCCCHHHHHh
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-RLESLQH--F-KKPWAHEHEPVKELVDAVN 314 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~-r~~~l~~--~-k~~~a~~~~~~~~L~e~v~ 314 (497)
||.|+|+|.-|..+|..|... | .+++++|+..-..+. +...... . ............++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998753 5 357888875311100 0000000 0 0000000011256777777
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010939 315 AIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 355 (497)
Q Consensus 315 ~vkptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSNPt 355 (497)
. +|++| ++... -..+++++.+.++ .+.-+|..++|-.
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 6 78776 33333 3678888888765 3456888888744
No 152
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=86.91 E-value=0.37 Score=57.39 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=34.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+|++.||+++|||.-|+-+++.|+.+ |+... ..++|.++|.+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 468899999999999999999999875 66211 13789999987
No 153
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.88 E-value=11 Score=37.85 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=54.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc--cCCCCCHHHHH
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAV 313 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~--~~~~~~L~e~v 313 (497)
+..||.|+|+|.-|.++++.|... |.- ...+++++|+. . .+....++.. .....+..|++
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~------~~~~~~l~~~~g~~~~~~~~e~~ 63 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----N------ETRLQELHQKYGVKGTHNKKELL 63 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----C------HHHHHHHHHhcCceEeCCHHHHH
Confidence 346899999999999999988653 410 12457776652 1 0111122221 11124666776
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010939 314 NAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 355 (497)
Q Consensus 314 ~~vkptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSNPt 355 (497)
+. +|++| ++-.+ -..+++++.+... .+..+|..+++-+
T Consensus 64 ~~--aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 64 TD--ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred hc--CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 65 66555 33333 2445566666543 3456777776554
No 154
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.87 E-value=3.1 Score=43.21 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-.|++.=++..+.+++.+++|++|.+. .|.-+|.||.. .| ..+.+++++ |
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~---T---------- 194 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA---T---------- 194 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC---C----------
Confidence 4568888899999999999999999999764 67788877754 24 346666653 1
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|-..+.++.++.++|+
T Consensus 195 -----------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 195 -----------RDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 346777877 99999999999999999996
No 155
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.87 E-value=3.1 Score=43.26 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 215 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
+-.-+|-+|++.=|+-.|.+++.++++++|.+ .-|.-+|.||.. .|.+ ....+.++.++
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 33456788889999999999999999999975 467777777753 2321 01345555443
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 294 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 294 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|-..+.++.++.++|+
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 156
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.85 E-value=1.6 Score=45.21 Aligned_cols=123 Identities=16% Similarity=0.308 Sum_probs=75.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhc-ccCC--CCCHHHHHhc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEP--VKELVDAVNA 315 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~-~~~~--~~~L~e~v~~ 315 (497)
||.|+|||..|..+|-.|+. .|+ ...+.|+|.+-=..++..-+|.+.. .|.. .... .++ .+.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998865 265 3689999974111111111233221 2221 0101 133 467777
Q ss_pred cCCcEEEEccCCC---CCCC--------------HHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccc--CcEEEe
Q 010939 316 IKPTILIGTSGQG---RTFT--------------KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 376 (497)
Q Consensus 316 vkptvLIG~S~~~---g~Ft--------------eevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~--Grai~A 376 (497)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||. .+...-++++++ =+-+|.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv---Dv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL---DIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH---HHHHHHHHHHhCcChhheec
Confidence 89988666553 3 23 47888899999999999999995 455555555541 123566
Q ss_pred cCC
Q 010939 377 SGS 379 (497)
Q Consensus 377 sGs 379 (497)
||.
T Consensus 143 ~gt 145 (307)
T cd05290 143 TGT 145 (307)
T ss_pred ccc
Confidence 553
No 157
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.79 E-value=1.9 Score=45.05 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=54.3
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCC---CC-----CCCHHHHhccccCcEEEecCCCCC
Q 010939 311 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS---QS-----ECTAEEAYTWSQGRAIFASGSPFD 382 (497)
Q Consensus 311 e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~---~~-----E~~peda~~~t~Grai~AsGsPf~ 382 (497)
++-+..+|+++|..|+.+ +...++-..+ ++-+|=++.=.-||.. +- +-|.+++..+.. . |+..-=..
T Consensus 104 ~l~~~~~~~aIlaSnTS~-l~~s~la~~~-~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lGk~ 178 (321)
T PRK07066 104 RISRAAKPDAIIASSTSG-LLPTDFYARA-THPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALGMR 178 (321)
T ss_pred HHHHhCCCCeEEEECCCc-cCHHHHHHhc-CCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcCCE
Confidence 344556788888777763 3222332222 3334447767777753 22 234445544421 1 22222234
Q ss_pred ccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHH
Q 010939 383 PFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAA 425 (497)
Q Consensus 383 pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aA 425 (497)
||.++ ...||-.=|-+.+|-+-=+.-+..--..|.+-+-+|
T Consensus 179 pV~v~--kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a 219 (321)
T PRK07066 179 PLHVR--KEVPGFIADRLLEALWREALHLVNEGVATTGEIDDA 219 (321)
T ss_pred eEecC--CCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 54432 256777777777776665555554444444444444
No 158
>PRK06141 ornithine cyclodeaminase; Validated
Probab=86.58 E-value=6.2 Score=40.77 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=64.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc---CCCCCHHHH
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 312 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e~ 312 (497)
...+++|+|+|..|..++..+... .+. ++++++|+. ..+ .......+.+.. ....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 567999999999999998877553 232 688888774 221 222222222111 123688999
Q ss_pred HhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCceEEec-CCCCCCCCCCHHHH
Q 010939 313 VNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEA 365 (497)
Q Consensus 313 v~~vkptvLIG~S~~~-g~Fteevi~~Ma~~~~rPIIFaL-SNPt~~~E~~peda 365 (497)
+++ .|++|-+++.. .+|+.++++. .-.|-+. |++..+-|+.++-.
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~~------g~~i~~ig~~~~~~~El~~~~~ 233 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLKP------GTHLDLVGNFTPDMRECDDEAI 233 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcCC------CCEEEeeCCCCcccccCCHHHH
Confidence 986 99998765543 3566666532 2244444 44556788887643
No 159
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.53 E-value=3.2 Score=42.99 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 215 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
+-.-+|-+|++.=++..+.+++..++|++|.+ ..|.-+|.||.. .|. .+.+|+|+ .
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~-------T---- 193 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK-------T---- 193 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 34567888899999999999999999999975 468888888854 242 45666553 1
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 294 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 294 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|-..|.++.+++++|+
T Consensus 194 -------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 194 -------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 347788887 99999999999999999997
No 160
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.52 E-value=1 Score=46.14 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.||.|+|+|+-|.++|..|... | .++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 3899999999999999999763 5 357777774
No 161
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.07 E-value=3.5 Score=42.58 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 215 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
+=.-+|-+|++.=++-.+.+++.++++++|-+ ..|.-+|.||.. .| ..+++|+++ |
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~---T-------- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK---T-------- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---C--------
Confidence 44567888999999999999999999999976 468888888754 24 345555553 1
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 294 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 294 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|-..+.++.|++++|+
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 347788887 99999999999999999996
No 162
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=86.05 E-value=1.7 Score=44.26 Aligned_cols=117 Identities=21% Similarity=0.384 Sum_probs=71.4
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCcc----CCchhchhhhcccC---CCCCHHHH
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE----SLQHFKKPWAHEHE---PVKELVDA 312 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~----~l~~~k~~~a~~~~---~~~~L~e~ 312 (497)
|.|+|||..|.++|..+.. .|+ + .++++|.+ .++.+ ++.+.. .+..... ...+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5799999999999987764 365 1 79999986 22211 011110 0000000 11354 45
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCc---EEE
Q 010939 313 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGR---AIF 375 (497)
Q Consensus 313 v~~vkptvLIG~S~~~g~--------------Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Gr---ai~ 375 (497)
+++ +|++|=+.+.+.. +-+++++.|.+++...+|+-.|||. ......+++++ |. -+|
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEE
Confidence 766 8988843332211 2347889999999999999999996 45555556655 32 377
Q ss_pred ecCC
Q 010939 376 ASGS 379 (497)
Q Consensus 376 AsGs 379 (497)
++|+
T Consensus 138 Glgt 141 (300)
T cd01339 138 GMAG 141 (300)
T ss_pred Eecc
Confidence 7774
No 163
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.01 E-value=2.5 Score=43.24 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=65.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhh-ccc---CCCCC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA-HEH---EPVKE 308 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a-~~~---~~~~~ 308 (497)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.. +++- | .++ .+. +...-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q-~~~~~~~vG~~Kve~ 88 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-Q-IHALRDNVGLAKAEV 88 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-c-cccChhhcChHHHHH
Confidence 458899999999999999999999875 76 78999998843322 2431 1 112 111 11134
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCC
Q 010939 309 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQS 358 (497)
Q Consensus 309 L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~ 358 (497)
+.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|++.+.
T Consensus 89 ~~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~ 136 (268)
T PRK15116 89 MAERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPKA 136 (268)
T ss_pred HHHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHHH
Confidence 66777777788766433 2245655544443222234666777766433
No 164
>PRK05442 malate dehydrogenase; Provisional
Probab=86.01 E-value=4.9 Score=42.12 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=72.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--cCCCccCCchhchhhhcccCCCCCHHHHHhc
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVNA 315 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi--~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~ 315 (497)
||.|+|| |..|..+|-.|+.. |+-...-...+.++|.+.-. .++..-+|.+...++-+...-..+..|.+++
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 9999998 99999998877653 33110001389999985321 1111112433332332221112456688887
Q ss_pred cCCcEEEEccCC---CCC-----------CCHHHHHHHHccC-CCceEEecCCCCCCCCCCHHHHhccc
Q 010939 316 IKPTILIGTSGQ---GRT-----------FTKEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWS 369 (497)
Q Consensus 316 vkptvLIG~S~~---~g~-----------Fteevi~~Ma~~~-~rPIIFaLSNPt~~~E~~peda~~~t 369 (497)
.|++|=+.+. +|- +=+++.+.+.+++ ...||+-.|||. .+..--+++++
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 9988844443 331 1245677788866 699999999995 55555555554
No 165
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.84 E-value=3.7 Score=42.50 Aligned_cols=83 Identities=22% Similarity=0.392 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-+|++.=++-.|.+|+.+++|++|.+ ..|.-+|.||.. .| ..+++|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~-------------- 190 (284)
T PRK14170 137 VPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR-------------- 190 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456788889999999999999999999976 467778877753 24 346666543
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|-..+.++.|+.++|+
T Consensus 191 ----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347778887 99999999999999999996
No 166
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.64 E-value=4.7 Score=41.03 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=55.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-cCCCCCHHHHHhcc-
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI- 316 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~v- 316 (497)
||.|+|.|.-|..+|..|... | .+++++|+.. .+ . ..+... .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~----~~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----EA---V----EALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----HH---H----HHHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999999753 5 3577777751 11 1 112211 11235677777664
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 355 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSNPt 355 (497)
++|++|=+ -......++++..+... .+..+|+-+|+-.
T Consensus 59 ~~dvvi~~-v~~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLM-VPAGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEE-ecCCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 36665532 22233556666555433 4567788777643
No 167
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=85.54 E-value=0.7 Score=51.31 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=33.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccc
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 285 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~ 285 (497)
+++.|++++|||+-||+||+-|+.+ |+ ++|.++|.--+-+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kVsy 377 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKVSY 377 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCeeec
Confidence 4578999999999999999999988 75 7999999754433
No 168
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.53 E-value=2.7 Score=43.62 Aligned_cols=126 Identities=19% Similarity=0.290 Sum_probs=77.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc--CCCCCHHHHHhc
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 315 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--~~~~~L~e~v~~ 315 (497)
.||.|+|||..|..+|..|+. .|+ ...+.++|.+-=..++-.-+|.+.. +|.... ...++.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 499999999999999988764 255 4679999974211111111233222 232211 11145554 776
Q ss_pred cCCcEEEEccCCCCC--CCH------------HHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccc--CcEEEecCC
Q 010939 316 IKPTILIGTSGQGRT--FTK------------EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASGS 379 (497)
Q Consensus 316 vkptvLIG~S~~~g~--Fte------------evi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~--Grai~AsGs 379 (497)
+|++|=+.+.+.. -|+ ++++.+.+++..-+|+-.|||. .....-++++++ -+-+|++|.
T Consensus 72 --adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 72 --SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV---DIMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH---HHHHHHHHHHhCCCHHHEEecCc
Confidence 8998755544211 343 6778888999999999999996 355556666531 123777764
Q ss_pred C
Q 010939 380 P 380 (497)
Q Consensus 380 P 380 (497)
-
T Consensus 147 ~ 147 (312)
T cd05293 147 N 147 (312)
T ss_pred h
Confidence 3
No 169
>PLN02602 lactate dehydrogenase
Probab=85.47 E-value=2.2 Score=45.07 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=78.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCC---CCHHHHHh
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---KELVDAVN 314 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~---~~L~e~v~ 314 (497)
.||.|+|||..|..+|-.|+. .|+ ...+.++|.+-=..++-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 365 3689999974211111111233222 22221 111 34444 66
Q ss_pred ccCCcEEEEccCCC---CCCCH------------HHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccc--CcEEEec
Q 010939 315 AIKPTILIGTSGQG---RTFTK------------EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFAS 377 (497)
Q Consensus 315 ~vkptvLIG~S~~~---g~Fte------------evi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~--Grai~As 377 (497)
+ +|++|=+.+.+ | -|+ ++++.|.+++..-+|+-.|||. .....-++++++ =+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 6 99998665543 3 343 7788888999999999999995 555666666652 1336777
Q ss_pred CC
Q 010939 378 GS 379 (497)
Q Consensus 378 Gs 379 (497)
|.
T Consensus 179 gt 180 (350)
T PLN02602 179 GT 180 (350)
T ss_pred cc
Confidence 63
No 170
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=85.43 E-value=1.9 Score=47.30 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=63.5
Q ss_pred ceeeecCCCCcHHHHHHHHcC-CCC--ceecCccchhHHHHHHHHHHHHHhCC--------CCCCceEEEeCcChHHHHH
Q 010939 184 LIQFEDFANHNAFDLLEKYGT-THL--VFNDDIQGTASVVLAGLISAMKFLGG--------SLADQRFLFLGAGEAGTGI 252 (497)
Q Consensus 184 lI~~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTa~V~lAgll~Al~~~g~--------~l~d~riv~~GAGsAg~Gi 252 (497)
-|.+|=+...+-.++.++|.- ..| ++||+....|....+-++..++.... ...+..+||+|||.||+..
T Consensus 147 ~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~a 226 (517)
T PRK15317 147 NITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAA 226 (517)
T ss_pred CceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHH
Confidence 366776767777888999974 455 45777888888888899988875322 2345689999999999999
Q ss_pred HHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 253 AELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 253 a~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
|..+.. .|+ ++.++|.+
T Consensus 227 A~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 227 AIYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHHH-----CCC-------cEEEEecC
Confidence 988864 374 56666654
No 171
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=85.40 E-value=0.8 Score=52.15 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=35.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
.+|++.||+++|||.-|+-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 457899999999999999999999876 86 89999998744
No 172
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=85.09 E-value=34 Score=37.04 Aligned_cols=94 Identities=26% Similarity=0.423 Sum_probs=51.8
Q ss_pred eeEEeccCCCccccccCcccccccccCcchhhhHHHHHHHH---------HHHHHhh-CCCcceeeecCCCCcHHHHHHH
Q 010939 132 LPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFM---------TAVKQNY-GERILIQFEDFANHNAFDLLEK 201 (497)
Q Consensus 132 lPi~LDvgtnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv---------~av~~~f-Gp~~lI~~EDf~~~~af~iL~r 201 (497)
+|.+.+.-.--+++.+||-+. +||..+..+++ +.+.+.+ |.+..+-.||+....+|++-
T Consensus 24 ~~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r-- 92 (397)
T PRK04346 24 MPALEELEEAYEKAKNDPEFQ---------AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKIN-- 92 (397)
T ss_pred HHHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHH--
Confidence 333334333445666776542 45555555543 3455566 46777778888777777531
Q ss_pred HcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEE-eCcChHHHHHHHHHHH
Q 010939 202 YGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLF-LGAGEAGTGIAELIAL 258 (497)
Q Consensus 202 yr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~-~GAGsAg~Gia~ll~~ 258 (497)
.++.-++.|.+ .|+ .+++. .|||..|+++|-....
T Consensus 93 -----------------~al~~~l~A~~-~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 93 -----------------NVLGQALLAKR-MGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred -----------------HHHHHHHHHHH-cCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 12333333332 332 35665 6888888888765543
No 173
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=85.06 E-value=2.2 Score=42.89 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 221 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 221 lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
-.|++.+++..+...+..+++++|+|.+|.+++..+.+ .| .+++++|+.
T Consensus 101 ~~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 101 GIGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 34556666654555667899999999888888877754 24 368888864
No 174
>PRK07574 formate dehydrogenase; Provisional
Probab=84.95 E-value=5.2 Score=42.98 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=88.3
Q ss_pred CCCCceecCcc---chhHHHHHHHHHHHHH--------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHH
Q 010939 204 TTHLVFNDDIQ---GTASVVLAGLISAMKF--------------------LGGSLADQRFLFLGAGEAGTGIAELIALEI 260 (497)
Q Consensus 204 ~~~~~FnDDiQ---GTa~V~lAgll~Al~~--------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~ 260 (497)
..+.+.|-.-- .+|=-+++-+|+.+|- .+..|.+++|.|+|.|..|..+|+.+...
T Consensus 136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~f- 214 (385)
T PRK07574 136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPF- 214 (385)
T ss_pred CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhC-
Confidence 46666664332 2333467777777662 13458999999999999999999998653
Q ss_pred HHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHH
Q 010939 261 SKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVV 336 (497)
Q Consensus 261 ~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Fteevi 336 (497)
|+ +++.+|+...- . + . ...+ ......+|.|+++. .|+++=.-- ..++|+++.+
T Consensus 215 ----G~-------~V~~~dr~~~~---~-~-~---~~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l 271 (385)
T PRK07574 215 ----DV-------KLHYTDRHRLP---E-E-V---EQEL--GLTYHVSFDSLVSV--CDVVTIHCPLHPETEHLFDADVL 271 (385)
T ss_pred ----CC-------EEEEECCCCCc---h-h-h---Hhhc--CceecCCHHHHhhc--CCEEEEcCCCCHHHHHHhCHHHH
Confidence 64 57788875320 0 0 0 0011 01113579999987 898873321 1368999999
Q ss_pred HHHHccCCCceEEecCCCCCCCCCCHHHHh--ccccCcEEEec
Q 010939 337 EAMASLNEKPIIFSLSNPTSQSECTAEEAY--TWSQGRAIFAS 377 (497)
Q Consensus 337 ~~Ma~~~~rPIIFaLSNPt~~~E~~peda~--~~t~Grai~As 377 (497)
..|. +..++.=.|.= ++.-++|+ +...|+.--|.
T Consensus 272 ~~mk---~ga~lIN~aRG----~iVDe~AL~~AL~sG~i~GAa 307 (385)
T PRK07574 272 SRMK---RGSYLVNTARG----KIVDRDAVVRALESGHLAGYA 307 (385)
T ss_pred hcCC---CCcEEEECCCC----chhhHHHHHHHHHhCCccEEE
Confidence 9995 56777766653 34444333 12356654443
No 175
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.75 E-value=1.3 Score=39.83 Aligned_cols=32 Identities=38% Similarity=0.499 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||+++|+|.-|..+|+.|+.+ |+ ++|+++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCC
Confidence 689999999999999999875 76 799999987
No 176
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.45 E-value=12 Score=38.29 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..+.|++..+. ..+++++|.|+|+.|...+.+.. + .|. ++++.+|+.
T Consensus 156 ~~a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~~ 203 (343)
T PRK09880 156 AVAIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADVS 203 (343)
T ss_pred HHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeCC
Confidence 333555655443 36889999999977766554333 2 363 567777653
No 177
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.26 E-value=3.9 Score=43.53 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=21.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 010939 235 LADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
-...||.|+|||+=|+++|..+..
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHh
Confidence 345799999999999999999975
No 178
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.23 E-value=5.5 Score=43.00 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+...||+|+|.|-.|+++|++|.. .|. .+.+.|.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKK 46 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCC
Confidence 556799999999999999999875 363 57888865
No 179
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.18 E-value=29 Score=35.02 Aligned_cols=32 Identities=41% Similarity=0.787 Sum_probs=26.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.||.|+|+|.-|.+||..++.+ | .+++++|++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 4799999999999999998763 6 468888874
No 180
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.16 E-value=1.2 Score=44.52 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=33.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 57889999999999999999999764 86 799999987
No 181
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.62 E-value=5.5 Score=41.43 Aligned_cols=87 Identities=20% Similarity=0.288 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-+|++.=|+-.+.+|+.+++|++|.+. -|.-+|.||.. .|.+. .-.+.+|.++
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 3567888899999999999999999999764 67788877754 23210 0224444433
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|-..+.++.++.++|+
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999996
No 182
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=83.62 E-value=2.3 Score=46.62 Aligned_cols=48 Identities=27% Similarity=0.390 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.|++.+++-.+.++++.+++|+|+|.+|.+++..+.+ .|. +++++|++
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4678888888889999999999999888887777754 362 67777764
No 183
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=83.48 E-value=8.5 Score=40.24 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=68.4
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHH
Q 010939 232 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 311 (497)
Q Consensus 232 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 311 (497)
+..|.+.+|.|+|.|..|..+|+.+.. .|+ +++.+|+.- .. .. .+.+ ...+|.|
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~-----~G~-------~V~~~d~~~----~~---~~----~~~~---~~~~l~e 194 (330)
T PRK12480 141 SKPVKNMTVAIIGTGRIGAATAKIYAG-----FGA-------TITAYDAYP----NK---DL----DFLT---YKDSVKE 194 (330)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEeCCh----hH---hh----hhhh---ccCCHHH
Confidence 346889999999999999999998864 263 688888641 10 00 1111 2257889
Q ss_pred HHhccCCcEEEEcc-CC---CCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcc-ccCcEEEe
Q 010939 312 AVNAIKPTILIGTS-GQ---GRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW-SQGRAIFA 376 (497)
Q Consensus 312 ~v~~vkptvLIG~S-~~---~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~-t~Grai~A 376 (497)
+++. .|+++=.- .. -+.|+++++..|. +..++.-.|.- .-+.-++.+++ ..|+.-.|
T Consensus 195 ll~~--aDiVil~lP~t~~t~~li~~~~l~~mk---~gavlIN~aRG---~~vd~~aL~~aL~~g~i~ga 256 (330)
T PRK12480 195 AIKD--ADIISLHVPANKESYHLFDKAMFDHVK---KGAILVNAARG---AVINTPDLIAAVNDGTLLGA 256 (330)
T ss_pred HHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC---CCcEEEEcCCc---cccCHHHHHHHHHcCCeeEE
Confidence 9987 88776322 11 1467788888885 55666655543 33444433333 34655433
No 184
>PRK07340 ornithine cyclodeaminase; Validated
Probab=83.25 E-value=15 Score=37.95 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=62.4
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCC--CCCHHHH
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP--VKELVDA 312 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~--~~~L~e~ 312 (497)
....+++++|+|..|...+..++.. .++ ++++++|+. ..+ .......+.+...+ ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3567999999999998888887653 243 678888875 221 11222222111111 3689999
Q ss_pred HhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHHHH
Q 010939 313 VNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 365 (497)
Q Consensus 313 v~~vkptvLIG~S~~~-g~Fteevi~~Ma~~~~rPIIFaLSNPt-~~~E~~peda 365 (497)
+++ .|++|-++... .+|.. +++ +.--|-++.-.+ .+.|+.+|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~------~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR------AGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC------CCCEEEecCCCCCCcccCCHHHH
Confidence 986 99999776543 35544 231 334555554322 3677776533
No 185
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.05 E-value=6 Score=40.91 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 010939 216 TASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 294 (497)
Q Consensus 216 Ta~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~ 294 (497)
-.-+|-.|++.=++-.+.+++.+++|++|.+ .-|.-+|.||.. .| ..++++.++ .
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVtichs~-------T----- 190 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HD-------ATVTIAHSK-------T----- 190 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEECCC-------C-----
Confidence 3467888889999999999999999999975 468888888754 24 245555443 1
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 295 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 295 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|-..+.++.|+.++|+
T Consensus 191 ------------~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 191 ------------RNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 247788887 99999999999999999997
No 186
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=82.84 E-value=13 Score=38.58 Aligned_cols=106 Identities=10% Similarity=0.224 Sum_probs=70.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHH
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 312 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~ 312 (497)
..|.++++.|+|-|..|-.+|+++... |+ +|+.+|+.+- .. + ..+ ...+|.|+
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~f-----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~el 193 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAF-----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEEL 193 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhc-----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHH
Confidence 468999999999999999999988532 64 6888888531 10 0 011 12479999
Q ss_pred HhccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcc--ccCcEE
Q 010939 313 VNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAI 374 (497)
Q Consensus 313 v~~vkptvLIG~----S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~--t~Grai 374 (497)
++. .|+++=. ....++|+++.++.|. +..++.=.|. .++-=|+|+.. ..|+.-
T Consensus 194 l~~--sDvv~lh~Plt~~T~~li~~~~~~~Mk---~~a~lIN~aR----G~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 194 LKT--SDIISIHAPLNEKTKNLIAYKELKLLK---DGAILINVGR----GGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hhc--CCEEEEeCCCCchhhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeE
Confidence 987 8988732 1223799999999996 6667775554 44444443321 457654
No 187
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=82.78 E-value=2 Score=39.59 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=26.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
||||+|+|.||+..|..|.. .| .+++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999973 24 5788887653
No 188
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.52 E-value=6.1 Score=40.96 Aligned_cols=83 Identities=23% Similarity=0.359 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-.|++.=++-.+.+++..++|++|.+ ..|.-+|.||.. .| ..++++.|+ .
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~-------T------ 189 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK-------T------ 189 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC-------C------
Confidence 356788889999999999999999999975 578888888854 24 245555543 1
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 190 -----------~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 190 -----------QDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -----------CCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 247788887 99999999999999999996
No 189
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.45 E-value=5.8 Score=40.03 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+||.|+|+|.-|.+||..+... | .+++++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 5899999999999999998653 6 368888875
No 190
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.12 E-value=4.5 Score=41.64 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=74.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccC-CCCCHHHHHhccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE-PVKELVDAVNAIK 317 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~-~~~~L~e~v~~vk 317 (497)
||.|+|+|..|..+|..+.. .|+ ...++++|++-=..++...++.+. .++-.+.. ..++. +.+++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999988765 264 367999997511111100012211 11211110 01344 55766
Q ss_pred CcEEEEccCCCCCC--------------CHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccc--CcEEEecCCCC
Q 010939 318 PTILIGTSGQGRTF--------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASGSPF 381 (497)
Q Consensus 318 ptvLIG~S~~~g~F--------------teevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~--Grai~AsGsPf 381 (497)
.|+.|=+.+.+..- =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.-.
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 78777444433111 136788888899999999999994 666666666641 13377776543
No 191
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=82.05 E-value=5.9 Score=42.43 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 010939 216 TASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 294 (497)
Q Consensus 216 Ta~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~ 294 (497)
=.-+|-.|++.=|+..+.+|+.+++|++|-+ .-|.-+|.||.. .| ..+.+|.++
T Consensus 210 f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~------------- 264 (364)
T PLN02616 210 FVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR------------- 264 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC-------------
Confidence 3456778889999999999999999999975 467777777754 24 245666443
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 295 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 295 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|-..+.++.++.++|+
T Consensus 265 -----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 -----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1357788887 99999999999999999997
No 192
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.94 E-value=7.7 Score=40.24 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch
Q 010939 216 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 294 (497)
Q Consensus 216 Ta~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~ 294 (497)
-.-+|-.|++.=|+-.|.+|+.+++|++|-+. -|.-+|.||.. .|.+. ...+.++.++
T Consensus 132 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------- 190 (287)
T PRK14181 132 FIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------- 190 (287)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC-------------
Confidence 34568888899999999999999999999764 68888877754 23110 1234444332
Q ss_pred hchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 295 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 295 ~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|-..+.++.++.++|+
T Consensus 191 -----------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 -----------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357888887 99999999999999999997
No 193
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.89 E-value=2 Score=47.07 Aligned_cols=84 Identities=20% Similarity=0.180 Sum_probs=60.8
Q ss_pred eeeecCCCCcHHHHHHHHcC-CCC--ceecCccchhHHHHHHHHHHHHHh--------CCCCCCceEEEeCcChHHHHHH
Q 010939 185 IQFEDFANHNAFDLLEKYGT-THL--VFNDDIQGTASVVLAGLISAMKFL--------GGSLADQRFLFLGAGEAGTGIA 253 (497)
Q Consensus 185 I~~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTa~V~lAgll~Al~~~--------g~~l~d~riv~~GAGsAg~Gia 253 (497)
|..|=+....-.++.++|.- ..| ++||+..+.|....+-+++.++.. ...-.+.++||+|||+||+..|
T Consensus 149 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA 228 (515)
T TIGR03140 149 ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAA 228 (515)
T ss_pred ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHH
Confidence 44555667777788899974 455 458888888888888888877654 1224457899999999999998
Q ss_pred HHHHHHHHHhcCCChhhhcCeEEEEcc
Q 010939 254 ELIALEISKQTNMPLEETRKKIWLVDS 280 (497)
Q Consensus 254 ~ll~~~~~~~~G~s~eeA~~~i~~vD~ 280 (497)
..+.. .|+ ++.++|.
T Consensus 229 ~~la~-----~G~-------~v~li~~ 243 (515)
T TIGR03140 229 IYAAR-----KGL-------RTAMVAE 243 (515)
T ss_pred HHHHH-----CCC-------cEEEEec
Confidence 88765 363 5666764
No 194
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.80 E-value=6.8 Score=40.53 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 215 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
+-.-+|-.|++.=++-.+.+|++.++|++|.+ .-|.-+|.||.. .| ..+.+|+++ |
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------ATVt~chs~---T-------- 192 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AK-------ATVTTCHRF---T-------- 192 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEEcCC---C--------
Confidence 33567888999999999999999999999976 468888888854 24 345555543 1
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 294 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 294 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|-..+.++.|++++|+
T Consensus 193 -------------~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 193 -------------TDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -------------CCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 246666777 99999999999999999996
No 195
>PLN02527 aspartate carbamoyltransferase
Probab=81.66 E-value=71 Score=33.29 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHHHcCCCCcee--cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCc
Q 010939 168 LHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 245 (497)
Q Consensus 168 vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GA 245 (497)
+.+.+..+ .+| .++ |-.-.++.....++ .+| .++||.| |+...=-+=+||=++.-.+..| ++++.||+++|.
T Consensus 86 ~~Dta~vl-s~y-~D~-iviR~~~~~~~~~~-a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD 159 (306)
T PLN02527 86 LEDTIRTV-EGY-SDI-IVLRHFESGAARRA-AAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGD 159 (306)
T ss_pred HHHHHHHH-HHh-CcE-EEEECCChhHHHHH-HHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECC
Confidence 34444433 445 333 33444544444333 343 4799999 4444445567787777766666 599999999999
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc-CC---CCCHHHHHhccCCcEE
Q 010939 246 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP---VKELVDAVNAIKPTIL 321 (497)
Q Consensus 246 GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~---~~~L~e~v~~vkptvL 321 (497)
+.=+ -+++-++.++.+..|+ +|.++-.+|+- +++....++++. .. ..++.|++++ +||+
T Consensus 160 ~~~~-rv~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv 222 (306)
T PLN02527 160 LANG-RTVRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVL 222 (306)
T ss_pred CCCC-hhHHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEE
Confidence 8532 3455555554432253 67777777761 222223344331 11 3689999998 9999
Q ss_pred EEccCC
Q 010939 322 IGTSGQ 327 (497)
Q Consensus 322 IG~S~~ 327 (497)
.-.+.+
T Consensus 223 yt~~~q 228 (306)
T PLN02527 223 YQTRIQ 228 (306)
T ss_pred EECCcc
Confidence 987755
No 196
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=81.65 E-value=11 Score=39.20 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=90.6
Q ss_pred chhHHHHHHHHHHHHHh----------------CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 010939 215 GTASVVLAGLISAMKFL----------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 278 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~----------------g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~v 278 (497)
..|--+++-+|+..|-. +..+.++++.|+|-|..|..+|+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 34555666666655422 3468899999999999999999999753 75 56777
Q ss_pred ccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHccCCCceEEecCCC
Q 010939 279 DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNP 354 (497)
Q Consensus 279 D~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Fteevi~~Ma~~~~rPIIFaLSNP 354 (497)
|+.. .. .+... .+ ....+|.|+++. .|+++=+-. .-++|+++.++.|. +..++.=.|.
T Consensus 166 ~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR- 227 (312)
T PRK15469 166 SRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLAR- 227 (312)
T ss_pred eCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECCC-
Confidence 7631 11 11101 11 123579999988 888873211 12578888888885 4556665554
Q ss_pred CCCCCCCHHHHh--ccccCcEEEecCCCCCccccCCeeeCCCCccccccchhhh
Q 010939 355 TSQSECTAEEAY--TWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLG 406 (497)
Q Consensus 355 t~~~E~~peda~--~~t~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGig 406 (497)
.++--|+|+ +...|+.--|.--=|.+--.... ..-=+..|.++-|=++
T Consensus 228 ---G~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHia 277 (312)
T PRK15469 228 ---GVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVA 277 (312)
T ss_pred ---ccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCC
Confidence 444445444 22456654332222221111000 0012456888888766
No 197
>PRK06487 glycerate dehydrogenase; Provisional
Probab=81.61 E-value=11 Score=39.07 Aligned_cols=186 Identities=17% Similarity=0.133 Sum_probs=106.0
Q ss_pred CCCCceecC---ccchhHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcChHHHHHHHHH
Q 010939 204 TTHLVFNDD---IQGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAELI 256 (497)
Q Consensus 204 ~~~~~FnDD---iQGTa~V~lAgll~Al~~~------------------------g~~l~d~riv~~GAGsAg~Gia~ll 256 (497)
..+.+.|-- -+.+|=-+++.+|+..|-. +..|.++++.|+|-|..|..+|+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 355555532 1345556677777665522 2368999999999999999999998
Q ss_pred HHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEc----cCCCCCCC
Q 010939 257 ALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTFT 332 (497)
Q Consensus 257 ~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft 332 (497)
... |+ +++.+|+.+ ..+ . + ...+|.|+++. .|+++=. ....|.|+
T Consensus 168 ~~f-----gm-------~V~~~~~~~-----~~~---~-----~----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EAF-----GM-------RVLIGQLPG-----RPA---R-----P----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hhC-----CC-------EEEEECCCC-----Ccc---c-----c----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 532 64 577777652 100 0 0 12479999987 8988832 22247999
Q ss_pred HHHHHHHHccCCCceEEecCCCCCCCCCCHHHHh--ccccCcEEEecCCCC--CccccCCeeeCCCCccccccchhhhHH
Q 010939 333 KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY--TWSQGRAIFASGSPF--DPFEYGDNVFVPGQANNAYIFPGLGLG 408 (497)
Q Consensus 333 eevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~--~~t~Grai~AsGsPf--~pv~~~G~~~~p~Q~NN~~iFPGiglG 408 (497)
++.+..|. +..++.=.|. .++--|+|+ +..+|+.--|.=-=| .|.. .+....--+..|.++-|=++-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~-~~~pl~~~~~pnvilTPHia~~ 288 (317)
T PRK06487 217 ARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPV-NGNPLLAPDIPRLIVTPHSAWG 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCC-CCCchhhcCCCCEEECCccccC
Confidence 99999995 6667765554 333334333 224576544321111 1111 1111110035688888887632
Q ss_pred HHHcCCcccCHHHHHHHHHHHhccC
Q 010939 409 LIMSGAIRVHDDMLLAAAEALAGQV 433 (497)
Q Consensus 409 ~i~~~a~~itd~m~~aAA~aLA~~v 433 (497)
.. .-...|...+++.|.+..
T Consensus 289 t~-----e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 289 SR-----EARQRIVGQLAENARAFF 308 (317)
T ss_pred CH-----HHHHHHHHHHHHHHHHHH
Confidence 22 223445555555555544
No 198
>PRK06436 glycerate dehydrogenase; Provisional
Probab=81.59 E-value=23 Score=36.73 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=64.2
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHH
Q 010939 232 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 311 (497)
Q Consensus 232 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 311 (497)
+..|.++++.|+|-|..|..+|+++. + -|+ +++.+|+... .+.. + ....+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~~r~~~-----~~~~---~-------~~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAYTRSYV-----NDGI---S-------SIYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEECCCCc-----ccCc---c-------cccCCHHH
Confidence 35799999999999999999998664 3 264 6888887521 0111 0 01247889
Q ss_pred HHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010939 312 AVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 312 ~v~~vkptvLIG~S----~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
+++. .|+++=.- ..-++|+++.++.|. +..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 8877 89887331 113689999999996 677888777644
No 199
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.58 E-value=7.5 Score=40.52 Aligned_cols=86 Identities=12% Similarity=0.226 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhc
Q 010939 218 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 296 (497)
Q Consensus 218 ~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k 296 (497)
-+|-.|++.=|+-.+.+|+.++++++|.+. -|.-+|.||.. .|.. ....+.++.++
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~aTVtvchs~--------------- 194 (297)
T PRK14167 138 PCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQ-----KADG---GNATVTVCHSR--------------- 194 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhc-----CccC---CCCEEEEeCCC---------------
Confidence 468888899999999999999999999764 68888887753 1110 01234444442
Q ss_pred hhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 297 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 297 ~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ---------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ---------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 200
>PRK06153 hypothetical protein; Provisional
Probab=81.56 E-value=2 Score=46.39 Aligned_cols=101 Identities=17% Similarity=0.280 Sum_probs=61.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc-----CCCC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-----EPVK 307 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-----~~~~ 307 (497)
.+|++.||+|+|+|..|.-|+++|+.. |+ ++|.++|.+=+ ... +|+-.--.|-.+. +...
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~V-e~S---NLnRQ~gaf~~~DvGk~~~KVe 236 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDF-LQH---NAFRSPGAASIEELREAPKKVD 236 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEe-ccc---ccccccccCCHhHcCCcchHHH
Confidence 568899999999999999999999875 76 79999999822 221 2322110111111 1123
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE-ecCCCC
Q 010939 308 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPT 355 (497)
Q Consensus 308 ~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIF-aLSNPt 355 (497)
.+.+.++..++.+ .....-++++-+..+. +-.+|| ++=|..
T Consensus 237 vaa~rl~~in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~ 278 (393)
T PRK06153 237 YFKSRYSNMRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGS 278 (393)
T ss_pred HHHHHHHHhCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHH
Confidence 4666666666654 2233356888777653 455665 344444
No 201
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.30 E-value=40 Score=33.80 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=26.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+||.|+|+|.-|.++|..+... |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 4899999999999999988653 63 68888854
No 202
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=81.29 E-value=8 Score=39.97 Aligned_cols=121 Identities=21% Similarity=0.321 Sum_probs=73.3
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhc-----c-cCCC---C
Q 010939 238 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-----E-HEPV---K 307 (497)
Q Consensus 238 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~-----~-~~~~---~ 307 (497)
.||.|+|| |..|..+|..++. .|+ ...+.++|++--+. .+..++.++.+ . ...+ .
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~~-----~l~~~~~dl~d~~~~~~~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSLE-----KLKGLRLDIYDALAAAGIDAEIKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECccccc-----ccccccchhhhchhccCCCcEEEECC
Confidence 38999998 9999999998875 365 24799999852111 11111111111 1 0111 2
Q ss_pred CHHHHHhccCCcEEEEccCCC---C-----------CCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccc--C
Q 010939 308 ELVDAVNAIKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--G 371 (497)
Q Consensus 308 ~L~e~v~~vkptvLIG~S~~~---g-----------~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~--G 371 (497)
+ .+.+++ .|++|=+.+.+ | -+-+++++.|.+++...+|+--|||. .+....+++++. .
T Consensus 66 d-~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~ 139 (309)
T cd05294 66 D-LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDK 139 (309)
T ss_pred C-HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCH
Confidence 4 455777 88888665532 1 23567888888999999999999995 333344444331 1
Q ss_pred cEEEecCC
Q 010939 372 RAIFASGS 379 (497)
Q Consensus 372 rai~AsGs 379 (497)
+-+|++|.
T Consensus 140 ~~viG~gt 147 (309)
T cd05294 140 NRVFGLGT 147 (309)
T ss_pred HHEeeccc
Confidence 33666664
No 203
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.07 E-value=14 Score=40.92 Aligned_cols=37 Identities=22% Similarity=0.036 Sum_probs=29.6
Q ss_pred eCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHH
Q 010939 391 FVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAE 427 (497)
Q Consensus 391 ~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~ 427 (497)
..||.++|-+.+|.+.-+..+...--++.+.+.++.+
T Consensus 185 d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3578899999999998888888777677777777654
No 204
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.94 E-value=28 Score=34.44 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=50.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc---CCCCCHHHHHhc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDAVNA 315 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~---~~~~~L~e~v~~ 315 (497)
||.|+|+|.-|..+++-|... |.. .+.+++.|+. . +.. +.++... ....+..|+++.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~----~---~~~----~~l~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN----A---QIA----ARLAERFPKVRIAKDNQAVVDR 61 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC----H---HHH----HHHHHHcCCceEeCCHHHHHHh
Confidence 799999999999999988653 542 2456666653 1 111 1222211 112466666665
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010939 316 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 316 vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
.|++| ++..+..+ +++++... ..+..+|...+-++
T Consensus 62 --aDvVi-lav~p~~~-~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 62 --SDVVF-LAVRPQIA-EEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred --CCEEE-EEeCHHHH-HHHHHHhc-cCCCCEEEEECCCC
Confidence 56554 33323222 56665542 23455666666555
No 205
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=80.94 E-value=2.5 Score=34.35 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=29.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 285 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~ 285 (497)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999998552 5 6899999987776
No 206
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=80.90 E-value=3.4 Score=42.76 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=55.7
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhc-c--cCCCCCHHHHH
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-E--HEPVKELVDAV 313 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~-~--~~~~~~L~e~v 313 (497)
-.++.|+|+|.-|..-++.+... .++ ++|+++|+. ..+ ...+...+.+ . -....|++|++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 35899999999988888877654 243 789988875 121 2222222322 1 11236899999
Q ss_pred hccCCcEEEEccCCC---CCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHHHH
Q 010939 314 NAIKPTILIGTSGQG---RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 365 (497)
Q Consensus 314 ~~vkptvLIG~S~~~---g~Fteevi~~Ma~~~~rPIIFaLSNPt-~~~E~~peda 365 (497)
+. .|+++-+.... .+|+.++++ +.-.|-++.--+ .+.|+.++-.
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~~ 238 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDELL 238 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHHh
Confidence 99 99999875443 368888776 344566665422 2467776544
No 207
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=80.89 E-value=8.3 Score=43.99 Aligned_cols=132 Identities=15% Similarity=0.208 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHHHHH-hhCCCcceeeecCCCC----cHHHHHHHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCC
Q 010939 162 QEYAELLHEFMTAVKQ-NYGERILIQFEDFANH----NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLA 236 (497)
Q Consensus 162 ~~y~~~vdefv~av~~-~fGp~~lI~~EDf~~~----~af~iL~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~ 236 (497)
+.|.+.|-|.++++.+ .| .||.+.. =--.+++||..+|--|+-... .++.|..- .+
T Consensus 68 ~~y~~~V~Eli~~L~~nGF-------VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~~--qR 128 (637)
T TIGR03693 68 APYQKRVFEIGEILYKNGF-------VRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFEL--SR 128 (637)
T ss_pred HHHHHHHHHHHHHHHhCCc-------eeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhhh--hh
Confidence 4455555566666654 44 4665422 123478999987766554322 22333322 28
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-c----------CC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-H----------EP 305 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~----------~~ 305 (497)
+.||+++|.|.-|.-+.-.|+. .|+ .+|-.+|.+=..+ +.. .+.+. .+.|++ . ..
T Consensus 129 ~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~~vd~D~v~S-Nln-RIgEl-~e~A~~~n~~v~v~~i~~~~ 194 (637)
T TIGR03693 129 NAKILAAGSGDFLTKLVRSLID-----SGF------PRFHAIVTDAEEH-ALD-RIHEL-AEIAEETDDALLVQEIDFAE 194 (637)
T ss_pred cccEEEEecCchHHHHHHHHHh-----cCC------CcEEEEeccccch-hhh-HHHHH-HHHHHHhCCCCceEeccCCc
Confidence 8999999999988777766655 486 7887886664422 111 01122 334433 1 12
Q ss_pred CCCHHHHHhccCCcEEEEccCCC
Q 010939 306 VKELVDAVNAIKPTILIGTSGQG 328 (497)
Q Consensus 306 ~~~L~e~v~~vkptvLIG~S~~~ 328 (497)
..++.|+++. -|++|=+|..+
T Consensus 195 ~~dl~ev~~~--~DiVi~vsDdy 215 (637)
T TIGR03693 195 DQHLHEAFEP--ADWVLYVSDNG 215 (637)
T ss_pred chhHHHhhcC--CcEEEEECCCC
Confidence 3478888877 68888888765
No 208
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.83 E-value=8.4 Score=39.90 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-.|++.=++-.+.+++.++++++|-+. -|.-+|.||.. .| ..+.+++++
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 3567888899999999999999999999764 67778777754 24 245555442
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|-..+.++.+++++|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1346777877 99999999999999999997
No 209
>PLN03139 formate dehydrogenase; Provisional
Probab=80.59 E-value=12 Score=40.41 Aligned_cols=189 Identities=14% Similarity=0.065 Sum_probs=105.1
Q ss_pred eeeecCCCCcHHHHHHHHcCCCCceecCc---cchhHHHHHHHHHHHHH--------------------hCCCCCCceEE
Q 010939 185 IQFEDFANHNAFDLLEKYGTTHLVFNDDI---QGTASVVLAGLISAMKF--------------------LGGSLADQRFL 241 (497)
Q Consensus 185 I~~EDf~~~~af~iL~ryr~~~~~FnDDi---QGTa~V~lAgll~Al~~--------------------~g~~l~d~riv 241 (497)
|+.--.+..| ..+-.--+..|++.|--- +-.|=-+++-+|+.+|- .+..|.+.+|.
T Consensus 125 I~~~g~G~D~-iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVG 203 (386)
T PLN03139 125 LLTAGIGSDH-IDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVG 203 (386)
T ss_pred EEECCccccc-cCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEE
Confidence 4444444443 222222235777777432 23344457777777662 23468999999
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEE
Q 010939 242 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTIL 321 (497)
Q Consensus 242 ~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvL 321 (497)
|+|.|..|..+|+.+... |+ +++.+|+... . .+ ..+ .. ......+|.|+++. .|++
T Consensus 204 IVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~---~~~-~~--g~~~~~~l~ell~~--sDvV 259 (386)
T PLN03139 204 TVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE---LEK-ET--GAKFEEDLDAMLPK--CDVV 259 (386)
T ss_pred EEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh---hHh-hc--CceecCCHHHHHhh--CCEE
Confidence 999999999999999653 64 5777887532 0 01 000 00 00113579999987 8988
Q ss_pred EEccC----CCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHh-cc-ccCcEEEecCCCCCccccCCeeeCCCC
Q 010939 322 IGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGSPFDPFEYGDNVFVPGQ 395 (497)
Q Consensus 322 IG~S~----~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~-~~-t~Grai~AsGsPf~pv~~~G~~~~p~Q 395 (497)
+=..- .-++|+++.+..|. +.-+++=.|. .++--|+|+ ++ ..|+.-.|..-=|.+--.. ....--+
T Consensus 260 ~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp-~d~pL~~ 331 (386)
T PLN03139 260 VINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQPAP-KDHPWRY 331 (386)
T ss_pred EEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCCCC-CCChhhc
Confidence 73211 12689999999995 5556665554 333333333 22 3566555544322211100 0000113
Q ss_pred ccccccchhhh
Q 010939 396 ANNAYIFPGLG 406 (497)
Q Consensus 396 ~NN~~iFPGig 406 (497)
..|..+-|=++
T Consensus 332 ~pNvilTPHia 342 (386)
T PLN03139 332 MPNHAMTPHIS 342 (386)
T ss_pred CCCeEEccccc
Confidence 45778888766
No 210
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=80.55 E-value=8.2 Score=39.87 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=67.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-c---CCCCCHHH
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-H---EPVKELVD 311 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~---~~~~~L~e 311 (497)
.-.++.++|+|.=|..-++.++.. ..+ ++|.+.|+. .++ ...+...+.+. . ....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FDH---ARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457999999999988877777653 233 788888774 222 22333333321 1 12478999
Q ss_pred HHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCceEEec-CCCCCCCCCCHHHH
Q 010939 312 AVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEA 365 (497)
Q Consensus 312 ~v~~vkptvLIG~S~~-~g~Fteevi~~Ma~~~~rPIIFaL-SNPt~~~E~~peda 365 (497)
+++. .|+++-+.+. ..+|..++++. .--|-+. |+-..+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9988 9999976432 35788888863 2335555 33225799998754
No 211
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.49 E-value=0.83 Score=50.52 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHH
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALE 259 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~ 259 (497)
.+.-+|+|+|||.||+..|++|.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~ 37 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF 37 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc
Confidence 3455999999999999999999886
No 212
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.19 E-value=4.1 Score=41.73 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||.|+|||+-|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999999753 5 467777775
No 213
>PRK07680 late competence protein ComER; Validated
Probab=80.02 E-value=4.2 Score=40.67 Aligned_cols=98 Identities=13% Similarity=0.242 Sum_probs=59.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 318 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkp 318 (497)
+|.|+|+|.-|..++..|... |.- ...+++++|++ .. ........+. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~---~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PA---KAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HH---HHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 699999999999999988653 420 12467877774 11 1111111110 00112567777765 7
Q ss_pred cEEEEccCCCCCCCHHHHHHHHccC-CCceEEecCCCCC
Q 010939 319 TILIGTSGQGRTFTKEVVEAMASLN-EKPIIFSLSNPTS 356 (497)
Q Consensus 319 tvLIG~S~~~g~Fteevi~~Ma~~~-~rPIIFaLSNPt~ 356 (497)
|++| ++..+ -..+++++.++.+- ++.+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 8775 33333 34678888887543 4568889998763
No 214
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=79.98 E-value=12 Score=38.88 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=70.7
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc
Q 010939 223 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302 (497)
Q Consensus 223 gll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~ 302 (497)
+.+++-.+..+ .-.++.|+|+|.-|-.-++.+... + . .++++++|+. .++ .......+.+.
T Consensus 116 salaa~~La~~--~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~ 176 (325)
T TIGR02371 116 GGVAAKYLARK--DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDY 176 (325)
T ss_pred HHHHHHHhCCC--CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhh
Confidence 33444444333 357899999999877655555331 1 2 3789988884 222 22222222211
Q ss_pred c---CCCCCHHHHHhccCCcEEEEcc-CCCCCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHHHH
Q 010939 303 H---EPVKELVDAVNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 365 (497)
Q Consensus 303 ~---~~~~~L~e~v~~vkptvLIG~S-~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt-~~~E~~peda 365 (497)
. ....+..|+++. .|++|-+. +...+|..++++ +..-|-++.-.+ .+.|++++-.
T Consensus 177 g~~v~~~~~~~eav~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 177 EVPVRAATDPREAVEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred CCcEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHHH
Confidence 1 124789999986 99998654 333578888884 555688887544 3789998754
No 215
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=79.18 E-value=9.4 Score=40.31 Aligned_cols=122 Identities=13% Similarity=0.159 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchh
Q 010939 219 VVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP 298 (497)
Q Consensus 219 V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~ 298 (497)
.+.|+.++|=++..++.+ ++.|+|+|.-+-...+.+... .++ ++|++.|++ .+........
T Consensus 114 TaAasavAa~~LA~~da~--~laiIGaG~qA~~ql~a~~~v----~~~------~~I~i~~r~-------~~~~e~~a~~ 174 (330)
T COG2423 114 TAAASAVAAKYLARKDAS--TLAIIGAGAQARTQLEALKAV----RDI------REIRVYSRD-------PEAAEAFAAR 174 (330)
T ss_pred HHHHHHHHHHHhccCCCc--EEEEECCcHHHHHHHHHHHhh----CCc------cEEEEEcCC-------HHHHHHHHHH
Confidence 466777888777776443 688999998765554444432 343 677777764 1112222222
Q ss_pred hhcc----cCCCCCHHHHHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCceEEe-cCCCCCCCCCCHHHHhc
Q 010939 299 WAHE----HEPVKELVDAVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFS-LSNPTSQSECTAEEAYT 367 (497)
Q Consensus 299 ~a~~----~~~~~~L~e~v~~vkptvLIG~S~~-~g~Fteevi~~Ma~~~~rPIIFa-LSNPt~~~E~~peda~~ 367 (497)
+.++ -....|++++|++ .|+++.+... ..+|..++|+ +.=-|-+ =||+-.+-|+.+|-..+
T Consensus 175 l~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~------~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 175 LRKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK------PGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HHhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC------CCcEEEecCCCCcccccCCHHHHHh
Confidence 2222 2345799999998 9999998532 3588999987 2223333 35777799999987655
No 216
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=79.00 E-value=13 Score=36.81 Aligned_cols=47 Identities=28% Similarity=0.412 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 010939 222 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 280 (497)
Q Consensus 222 Agll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~ 280 (497)
+..+.|++..+. ..+.+++|+|+|+.|...+.+.. + .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak-~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAAA-A----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------CEEEEECC
Confidence 344556665544 37889999999877655544332 2 364 56887764
No 217
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.78 E-value=5 Score=41.83 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 010939 237 DQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~ 258 (497)
..||.|+|||+-|+.+|..|.+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 3689999999999999998865
No 218
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=78.66 E-value=1 Score=49.52 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHH
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
+...+.||||+|||.||++-|..|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34456699999999999999999984
No 219
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=78.57 E-value=4.5 Score=41.40 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=57.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc-----hhchhhhccc-CCCCCHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ-----HFKKPWAHEH-EPVKELVD 311 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~-----~~k~~~a~~~-~~~~~L~e 311 (497)
.||.|+|+|.-|..+|..|..+ | .+++++|+..-...-+...+. ..+..+.... ....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998763 5 468888875211000000010 0000000000 001233 4
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCCC
Q 010939 312 AVNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 356 (497)
Q Consensus 312 ~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSNPt~ 356 (497)
+++. +|++|=+.... ..+++++.+..+ .+..+|..++|...
T Consensus 70 ~~~~--~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 70 ALAT--ADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred hccC--CCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 5544 78877443322 358888888765 45577888888654
No 220
>PRK08618 ornithine cyclodeaminase; Validated
Probab=78.13 E-value=12 Score=38.82 Aligned_cols=102 Identities=13% Similarity=0.213 Sum_probs=60.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc----cCCCCCHHH
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 311 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~e 311 (497)
...++.|+|+|..|-.++..+... .++ +++.++|+. ..+ .......+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 456899999999988777665442 244 789988885 222 22222222211 112468899
Q ss_pred HHhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCceEEecC-CCCCCCCCCHH
Q 010939 312 AVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLS-NPTSQSECTAE 363 (497)
Q Consensus 312 ~v~~vkptvLIG~S~~~-g~Fteevi~~Ma~~~~rPIIFaLS-NPt~~~E~~pe 363 (497)
+++. .|++|-++..+ ..|+ ++++ +.--|.++- +--.+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 9976 89988665432 3455 5543 344466663 32246888884
No 221
>PRK06932 glycerate dehydrogenase; Provisional
Probab=78.09 E-value=17 Score=37.73 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=80.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHH
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 312 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~ 312 (497)
..|.++++.|+|-|..|-.+|+++... |+ +++.+|+..- ... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 468899999999999999999988532 65 4666665310 000 0 113579999
Q ss_pred HhccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHh--ccccCcEEEecCCCCC--cc
Q 010939 313 VNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY--TWSQGRAIFASGSPFD--PF 384 (497)
Q Consensus 313 v~~vkptvLIG~----S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~--~~t~Grai~AsGsPf~--pv 384 (497)
++. .|+++=. ....|+|+++.+..|. +..++.=.|.- ++-=|+|+ ...+|+.--|.--=|. |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aRG----~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGRG----PLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCCc----cccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 988 9998832 2224799999999995 66677765553 33333333 1235665433221111 11
Q ss_pred ccCCeeeC-CCCccccccchhhhH
Q 010939 385 EYGDNVFV-PGQANNAYIFPGLGL 407 (497)
Q Consensus 385 ~~~G~~~~-p~Q~NN~~iFPGigl 407 (497)
.-+.--.. --+..|.++-|=++-
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCChhhHhhcCCCCEEECCcccc
Confidence 10100000 013568888887763
No 222
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=78.07 E-value=18 Score=37.75 Aligned_cols=162 Identities=16% Similarity=0.209 Sum_probs=87.3
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHH
Q 010939 232 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 311 (497)
Q Consensus 232 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e 311 (497)
|..|.++++.|+|-|..|..+|+.+..++ |+ ++...|+.. . .+ ....+ .....+|.|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm-------~V~~~~~~~----~-~~----~~~~~---~~~~~~l~e 196 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM-------PILYNARRH----H-KE----AEERF---NARYCDLDT 196 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------EEEEECCCC----c-hh----hHHhc---CcEecCHHH
Confidence 45789999999999999999999875232 54 455566531 0 00 00011 112257999
Q ss_pred HHhccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHh-c-cccCcEEEecCCCCC--c
Q 010939 312 AVNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-T-WSQGRAIFASGSPFD--P 383 (497)
Q Consensus 312 ~v~~vkptvLIG~----S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~-~-~t~Grai~AsGsPf~--p 383 (497)
+++. .|+++=. ....|+|+++.++.|. +.-++.=.|. .++--|+|+ + ..+|+.--|.=-=|+ |
T Consensus 197 ll~~--sDvv~lh~plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP 267 (323)
T PRK15409 197 LLQE--SDFVCIILPLTDETHHLFGAEQFAKMK---SSAIFINAGR----GPVVDENALIAALQKGEIHAAGLDVFEQEP 267 (323)
T ss_pred HHHh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCC
Confidence 9987 8987632 1113789999999995 5556665444 334334333 2 245665433211111 1
Q ss_pred cccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccC
Q 010939 384 FEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 433 (497)
Q Consensus 384 v~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v 433 (497)
..-+. .--...|..+-|=+|-....+ ...|...+++.+.+..
T Consensus 268 ~~~~~---pL~~~~nvilTPHia~~t~e~-----~~~~~~~~~~ni~~~~ 309 (323)
T PRK15409 268 LSVDS---PLLSLPNVVAVPHIGSATHET-----RYNMAACAVDNLIDAL 309 (323)
T ss_pred CCCCc---hhhcCCCEEEcCcCCCCcHHH-----HHHHHHHHHHHHHHHH
Confidence 10000 011345788888766433222 2334444455554443
No 223
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=78.00 E-value=42 Score=37.36 Aligned_cols=206 Identities=16% Similarity=0.146 Sum_probs=114.5
Q ss_pred CCCCceecCc---cchhHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHH
Q 010939 204 TTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 262 (497)
Q Consensus 204 ~~~~~FnDDi---QGTa~V~lAgll~Al~~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 262 (497)
..+++.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 3555555321 23445566777766653 24568999999999999999999998643
Q ss_pred hcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHH
Q 010939 263 QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEA 338 (497)
Q Consensus 263 ~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Fteevi~~ 338 (497)
|+ +++.+|+.. ...+ .. .+ .-...+|.|+++. .|+++=.-. ..++|+++.+..
T Consensus 163 --G~-------~V~~~d~~~--~~~~---~~----~~---g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI--SPER---AA----QL---GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC--ChhH---HH----hc---CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 64 688888742 1110 00 00 0111278899887 888764321 136899999999
Q ss_pred HHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeeeCCCCccccccchhhhHHHHHcCCcccC
Q 010939 339 MASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVH 418 (497)
Q Consensus 339 Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~it 418 (497)
|. +..++.=.|.-..--|..--+|+ ..|+.--|.=-=|.+--.... .--+..|..+-|=+|-....+ .
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL--~~g~i~gAaLDVf~~EP~~~~--pL~~~~nvilTPHia~~t~e~-----~ 287 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEAL--KSGKVAGAALDVFEKEPPTDS--PLFELPNVVVTPHLGASTAEA-----Q 287 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHH--hcCCeeEEEEecCCCCCCCCc--hhhcCCCeeEcCccccchHHH-----H
Confidence 96 66777777664433333333343 356654331111110000011 112346889999877433322 2
Q ss_pred HHHHHHHHHHHhccCCccCCCCCCccCCC
Q 010939 419 DDMLLAAAEALAGQVTQENFDKGLLYPPF 447 (497)
Q Consensus 419 d~m~~aAA~aLA~~v~~~~~~~~~l~P~~ 447 (497)
..|...+++.+......+.+..--=+|.+
T Consensus 288 ~~~~~~~~~ni~~~~~g~~~~~~vn~~~~ 316 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGGPVPNAVNLPSI 316 (526)
T ss_pred HHHHHHHHHHHHHHHcCCCcCceeeCCCC
Confidence 45556666666666554433222224544
No 224
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.89 E-value=11 Score=39.21 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhc
Q 010939 218 SVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 296 (497)
Q Consensus 218 ~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k 296 (497)
-+|-.|++.=++-.|.+++.+++|++|.+ .-|.-+|.||.. .|. .+.++.++
T Consensus 139 PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~--------------- 191 (297)
T PRK14186 139 SCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR--------------- 191 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC---------------
Confidence 46788888889999999999999999976 468888888854 253 35555442
Q ss_pred hhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 297 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 297 ~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
..+|.+.++. +|++|-..+.++.|+.++|+
T Consensus 192 ---------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ---------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357778887 99999999999999999997
No 225
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=77.71 E-value=2.1 Score=44.14 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=34.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++|++.||+++|+|..|+-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 457889999999999999999999875 86 899999988
No 226
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=77.69 E-value=9.8 Score=40.51 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh
Q 010939 217 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 295 (497)
Q Consensus 217 a~V~lAgll~Al~~~g~~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~ 295 (497)
.-+|-.|++.=|+-.+.+|+.+++|++|-+ .-|.-+|.||.. +|. .+.++.++ |
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~---T---------- 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF---T---------- 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC---C----------
Confidence 457888889999999999999999999975 467778777754 242 35555443 1
Q ss_pred chhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 296 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 296 k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|-..|.++.++.++|+
T Consensus 249 -----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 249 -----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 346778887 99999999999999999997
No 227
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=77.58 E-value=4.2 Score=36.32 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=50.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhcc
Q 010939 238 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 316 (497)
Q Consensus 238 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 316 (497)
.||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.=-..+. ++.+.-.......+-..+|.++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~- 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE- 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc-
Confidence 38999999 99999999998763 343 3466788876111111 1111000000001112567777777
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceEEe
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 350 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFa 350 (497)
+||+|=.|.+. -..+.++...++ ..|+|..
T Consensus 68 -~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 -ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp --SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred -CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 88887777543 334555555544 4455554
No 228
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=77.54 E-value=3.5 Score=42.90 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=41.8
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHH
Q 010939 213 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIAL 258 (497)
Q Consensus 213 iQGTa~V~lAgll~Al~~~g~~l~d~riv~~GA-GsAg~Gia~ll~~ 258 (497)
--+||-++.-+++-+...+|.+|++..+-|+|| |..|.+||+.|..
T Consensus 143 ns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 143 NSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred CccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 357889999999999999999999999999997 8999999999854
No 229
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=77.48 E-value=12 Score=45.32 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHH
Q 010939 237 DQRFLFLGAGEAGTGIAELIALE 259 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~ 259 (497)
-.+|||.|+|..|.|-++++...
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~l 225 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLL 225 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhc
Confidence 47999999999999999988654
No 230
>PRK07877 hypothetical protein; Provisional
Probab=77.43 E-value=5 Score=46.53 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=67.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCC--C----ccCCchhchhhhcc----
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS--R----LESLQHFKKPWAHE---- 302 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~--r----~~~l~~~k~~~a~~---- 302 (497)
.+|++.||+|+|+| -|..+|..|+.+ |+ .++|.++|.+=+=..+ | ..++-..|..-|+.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~ 171 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAE 171 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHH
Confidence 46889999999998 898999888764 63 2789999987332111 0 01121222222221
Q ss_pred -cCC---------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecC
Q 010939 303 -HEP---------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 303 -~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLS 352 (497)
.+. + .++.+.+++ .|++|-++-. .=++-+|...|.....|+|++-+
T Consensus 172 inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 172 LDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 111 1 256666765 8888877663 34677788888888999999875
No 231
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=77.29 E-value=3.1 Score=43.58 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=29.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999876 86 799999986
No 232
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=77.28 E-value=3.1 Score=41.59 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||+++|+|..|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999998
No 233
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=77.27 E-value=2.7 Score=39.00 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=21.2
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 241 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 241 v~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+|+|||.||+..|..|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999988755 375 448999987
No 234
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=76.96 E-value=13 Score=37.88 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=55.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-cCCCCCHHHHHhccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIK 317 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~vk 317 (497)
||.|+|.|.-|..+|..|... |. +++++|++. ++ .. .++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~----~~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VD----VAGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHHhCC
Confidence 689999999999999998652 53 577777641 11 11 12111 122357777776643
Q ss_pred -CcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010939 318 -PTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 355 (497)
Q Consensus 318 -ptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSNPt 355 (497)
+|++| ++.+.....++++..+... .+..+|.=+|+-.
T Consensus 59 ~advVi-~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIW-VMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEE-EEecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 56655 2222223556666665543 3567888887643
No 235
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=76.84 E-value=5.9 Score=40.85 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=74.9
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEE
Q 010939 242 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTIL 321 (497)
Q Consensus 242 ~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvL 321 (497)
|+|||..|..+|.+|+. .|+ ...+.++|.+-=..++-.-+|.+..-.+.+...-..+-.+.+++ .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 58999999999998864 266 25899999842222221112333221111111001233567777 9999
Q ss_pred EEccCCCCC--CC------------HHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccC--cEEEecCC
Q 010939 322 IGTSGQGRT--FT------------KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGS 379 (497)
Q Consensus 322 IG~S~~~g~--Ft------------eevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~G--rai~AsGs 379 (497)
|=+.+.+.. -| +++.+.+.+++..-+|+-.|||. ++...-++++++= +-+|.+|.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~---d~~t~~~~~~sg~p~~~viG~gt 139 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV---DILTYVAWKLSGFPKNRVIGSGT 139 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHH---HHHHHHHHHHhCCCHHHEEeccc
Confidence 866665321 12 36788888999999999999996 4666666665421 23677664
No 236
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=76.73 E-value=9.5 Score=42.26 Aligned_cols=102 Identities=18% Similarity=0.113 Sum_probs=54.5
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCC---CCCC-----CHHHHhccccCcEEE-ecCCCCCcccc
Q 010939 316 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS---QSEC-----TAEEAYTWSQGRAIF-ASGSPFDPFEY 386 (497)
Q Consensus 316 vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~---~~E~-----~peda~~~t~Grai~-AsGsPf~pv~~ 386 (497)
.+|+.+|...+. .++.+-+..-.++-+|=+-+-.-||.. +.|+ |.++++++.. .++ .-|. .||..
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lgk--~pv~v 185 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWGK--TPVRA 185 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcCC--ceEEe
Confidence 478888874443 244443333333333436777778642 2232 2344443211 000 1111 22322
Q ss_pred CCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHH
Q 010939 387 GDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 426 (497)
Q Consensus 387 ~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA 426 (497)
+ ..||-.+|...+|.+.=+..+...--++.+-+..+.
T Consensus 186 ~---d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 186 K---DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred c---CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1 347789999999988888777766656666666554
No 237
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=76.51 E-value=92 Score=34.72 Aligned_cols=196 Identities=19% Similarity=0.153 Sum_probs=108.8
Q ss_pred CCCCceecC---ccchhHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHH
Q 010939 204 TTHLVFNDD---IQGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 262 (497)
Q Consensus 204 ~~~~~FnDD---iQGTa~V~lAgll~Al~~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 262 (497)
..+++.|-- -+.+|=-+++.+|+..|- .|..|.++++.|+|-|..|..+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 355555532 123444566666665542 35579999999999999999999998642
Q ss_pred hcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEc-c---CCCCCCCHHHHHH
Q 010939 263 QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT-S---GQGRTFTKEVVEA 338 (497)
Q Consensus 263 ~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~-S---~~~g~Fteevi~~ 338 (497)
|+ +++.+|+.. .... . ..+ ......+|.|+++. .|+++=. . ...++|+++.+..
T Consensus 161 --G~-------~V~~~d~~~--~~~~---~----~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SPER---A----EQL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC--ChhH---H----Hhc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 64 588888741 1110 0 000 00112579999887 8887722 1 2236899999998
Q ss_pred HHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeeeCCCCccccccchhhhHHHHHcCCcccC
Q 010939 339 MASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVH 418 (497)
Q Consensus 339 Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~it 418 (497)
|. +..++.=.|.-.---|..--+|+ ..|+.-.|.=-=|.+=-... ..--+..|..+-|=+|-....++
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL--~~g~i~gAaLDVf~~EP~~~--~pL~~~~nvi~TPHia~~t~e~~----- 286 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEAL--EEGHVRAAALDVFEKEPPTD--NPLFDLDNVIATPHLGASTREAQ----- 286 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHH--HcCCeeEEEEecCCCCCCCC--ChhhcCCCeEECCCccccHHHHH-----
Confidence 85 56677766665433333333444 35665444211110000001 11134568888888775433332
Q ss_pred HHHHHHHHHHHhccCCcc
Q 010939 419 DDMLLAAAEALAGQVTQE 436 (497)
Q Consensus 419 d~m~~aAA~aLA~~v~~~ 436 (497)
..|...+++.+-+....+
T Consensus 287 ~~~~~~~~~ni~~~~~g~ 304 (525)
T TIGR01327 287 ENVATQVAEQVLDALKGL 304 (525)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 344455555555555433
No 238
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.31 E-value=6.6 Score=37.34 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=24.7
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++++.+++|.|| |..|..+++.+++ .| -++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~-----~G-------~~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAA-----EG-------ARVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 467789999997 4455556665543 36 358888886
No 239
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=75.84 E-value=14 Score=39.81 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc
Q 010939 223 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302 (497)
Q Consensus 223 gll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~ 302 (497)
-+..++.-..+.|+..|++|+|-+.-..++++.|.+. .|+.. ..+-+. +.++ +...+.-+.+..+
T Consensus 276 ~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~ 340 (427)
T PRK02842 276 RARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDG 340 (427)
T ss_pred HHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCC
Confidence 3445566666778899999999998999999998873 37632 111110 0111 1111111111111
Q ss_pred -----cCCCCCHHHHHhccCCcEEEEcc
Q 010939 303 -----HEPVKELVDAVNAIKPTILIGTS 325 (497)
Q Consensus 303 -----~~~~~~L~e~v~~vkptvLIG~S 325 (497)
......+.+.|+..|||.|||-|
T Consensus 341 ~~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 341 VRIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred CEEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 11223468899999999999976
No 240
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=75.67 E-value=8.4 Score=39.42 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=59.5
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh-chhhhc-ccCCCCCHHH
Q 010939 235 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF-KKPWAH-EHEPVKELVD 311 (497)
Q Consensus 235 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~-k~~~a~-~~~~~~~L~e 311 (497)
+++.||+|.|| |-.|..+++.|++ .| .+++.+|++---.....+.+... +..+.. +-.+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 35678999996 7788888877765 36 46887887521000000000000 001111 1112246778
Q ss_pred HHhccCCcEEEEccCCCCC----------------CCHHHHHHHHccC-CCceEEecC
Q 010939 312 AVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLN-EKPIIFSLS 352 (497)
Q Consensus 312 ~v~~vkptvLIG~S~~~g~----------------Fteevi~~Ma~~~-~rPIIFaLS 352 (497)
+++..+||++|=+.+.... .+..+++.|.+.+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888899999987764311 1345567666544 457888655
No 241
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=75.62 E-value=3.7 Score=40.75 Aligned_cols=39 Identities=36% Similarity=0.526 Sum_probs=33.7
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 232 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 232 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
-++|++-|++++|+|.-|..++..|+.+ |+ ++++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 3568899999999999999999999875 76 669999987
No 242
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=75.55 E-value=4.1 Score=42.81 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=28.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..||||+|+|.||+..|..|... |. ..+|.++|+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 467899999999999999998653 43 2478888765
No 243
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.49 E-value=8.3 Score=41.04 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=28.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+++.+++|.|+|..|.++|+.|.+ .| .++++.|++
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G-------~~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LG-------ANVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 567899999999999999888865 37 368888865
No 244
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=75.48 E-value=16 Score=38.73 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=66.1
Q ss_pred chhHHHHHHHHHHHHHh--------------------CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 010939 215 GTASVVLAGLISAMKFL--------------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 274 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~--------------------g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~ 274 (497)
-||-.+++-+|.++|-. |.++.++||.|+|.|+.|..||+.|... | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57777888888888743 3568899999999999999999999763 3 12
Q ss_pred EEEEccCCcccCCCccC-CchhchhhhcccCCCCCHHHHHhccCCcEEEEccCC----CCCCCHHHHHHHH
Q 010939 275 IWLVDSKGLIVSSRLES-LQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQ----GRTFTKEVVEAMA 340 (497)
Q Consensus 275 i~~vD~~GLi~~~r~~~-l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~----~g~Fteevi~~Ma 340 (497)
|. +.+|... ....+..+++ .-++.|...+ .|+++=..-- .++|+++.+..|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 32 3444211 1223334443 3466676665 8888744211 2689999999995
No 245
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=75.24 E-value=8.7 Score=40.36 Aligned_cols=108 Identities=20% Similarity=0.379 Sum_probs=68.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-CcccCCCccCCchhchhhhcccCCC---CCHHHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEHEPV---KELVDAV 313 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~-GLi~~~r~~~l~~~k~~~a~~~~~~---~~L~e~v 313 (497)
.||.++|||.-|...|-+|+. .++. +.+.++|.. +...-... +|.+.. .+......+ ++ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~-DL~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVAL-DLSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhc-chhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999999988843 3552 479999987 11111111 232221 121111111 23 4566
Q ss_pred hccCCcEEEEccC---CCC-----------CCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcc
Q 010939 314 NAIKPTILIGTSG---QGR-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW 368 (497)
Q Consensus 314 ~~vkptvLIG~S~---~~g-----------~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~ 368 (497)
++ .|+.|=+.+ .+| -.-+++.+++++.+...||+-.|||. |...|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 66 888774443 344 13457889999999999999999998 66665
No 246
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=75.19 E-value=3.9 Score=40.49 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 284 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi 284 (497)
-+|+|+|||.||+..|..|.. .|+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR-----AGI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH-----TTC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHh-----ccc-------ccccchhcccc
Confidence 479999999999999988876 375 58889987543
No 247
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=75.14 E-value=60 Score=35.06 Aligned_cols=191 Identities=17% Similarity=0.226 Sum_probs=111.4
Q ss_pred CCCCceecCc---cchhHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHH
Q 010939 204 TTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEISK 262 (497)
Q Consensus 204 ~~~~~FnDDi---QGTa~V~lAgll~Al~~------------------~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~ 262 (497)
..++++|--- +.+|=-+++.+|+.+|- .|..|.+.++.|+|-|..|..+|+.+...
T Consensus 97 ~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f--- 173 (409)
T PRK11790 97 RGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL--- 173 (409)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC---
Confidence 5777777432 33455577888877662 24569999999999999999999988643
Q ss_pred hcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHH
Q 010939 263 QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEA 338 (497)
Q Consensus 263 ~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Fteevi~~ 338 (497)
|+ +++.+|+.. + ..... + ....+|.|+++. .|+++=.- ...++|+++.+..
T Consensus 174 --Gm-------~V~~~d~~~-----~-~~~~~-----~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~~ 228 (409)
T PRK11790 174 --GM-------RVYFYDIED-----K-LPLGN-----A---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELAL 228 (409)
T ss_pred --CC-------EEEEECCCc-----c-cccCC-----c---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHhc
Confidence 64 678888641 1 00000 1 123579999987 88877321 1126899999999
Q ss_pred HHccCCCceEEecCCCCCCCCCCHHHHh--ccccCcEEEecCC---CCCccccCCeee-CCCCccccccchhhhHHHHHc
Q 010939 339 MASLNEKPIIFSLSNPTSQSECTAEEAY--TWSQGRAIFASGS---PFDPFEYGDNVF-VPGQANNAYIFPGLGLGLIMS 412 (497)
Q Consensus 339 Ma~~~~rPIIFaLSNPt~~~E~~peda~--~~t~Grai~AsGs---Pf~pv~~~G~~~-~p~Q~NN~~iFPGiglG~i~~ 412 (497)
|. +.-++.-.|.- ++-=|+|+ +...|+ |.+.|. +..|..-+.... .--+..|.++-|=+|-....+
T Consensus 229 mk---~ga~lIN~aRG----~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea 300 (409)
T PRK11790 229 MK---PGAILINASRG----TVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEA 300 (409)
T ss_pred CC---CCeEEEECCCC----cccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHH
Confidence 95 55666665543 33333333 123566 332221 112221110000 112456899999888543332
Q ss_pred CCcccCHHHHHHHHHHHhccCCc
Q 010939 413 GAIRVHDDMLLAAAEALAGQVTQ 435 (497)
Q Consensus 413 ~a~~itd~m~~aAA~aLA~~v~~ 435 (497)
...|...+++.+......
T Consensus 301 -----~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 301 -----QENIGLEVAGKLVKYSDN 318 (409)
T ss_pred -----HHHHHHHHHHHHHHHHcC
Confidence 244556666666665543
No 248
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=75.06 E-value=17 Score=37.38 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=27.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G-~s~eeA~~~i~~vD~~ 281 (497)
.||.|+|+|.-|-.|+.-|+.. | ++ .++|++.|+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC
Confidence 5899999999999988888764 5 33 3678877764
No 249
>PRK06823 ornithine cyclodeaminase; Validated
Probab=74.91 E-value=22 Score=37.02 Aligned_cols=117 Identities=12% Similarity=0.160 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc
Q 010939 223 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302 (497)
Q Consensus 223 gll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~ 302 (497)
+.+++-.+..+ .-.++.++|+|.-+...++.++.. + . .++|+++|+. ..+ ...+...+.+.
T Consensus 116 sala~~~La~~--d~~~l~iiG~G~qA~~~~~a~~~v--~--~------i~~v~v~~r~----~~~---a~~~~~~~~~~ 176 (315)
T PRK06823 116 GRIVARLLAPQ--HVSAIGIVGTGIQARMQLMYLKNV--T--D------CRQLWVWGRS----ETA---LEEYRQYAQAL 176 (315)
T ss_pred HHHHHHHhcCC--CCCEEEEECCcHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhc
Confidence 34444444433 346899999999988888776653 1 2 3788888874 222 22222212111
Q ss_pred c---CCCCCHHHHHhccCCcEEEEccC-CCCCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCHHHHh
Q 010939 303 H---EPVKELVDAVNAIKPTILIGTSG-QGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEAY 366 (497)
Q Consensus 303 ~---~~~~~L~e~v~~vkptvLIG~S~-~~g~Fteevi~~Ma~~~~rPIIFaLSNPt-~~~E~~peda~ 366 (497)
. ....+.+|+++. +|+++-+.+ ...+|..++++ +.-.|-+...-+ .+.|++++-..
T Consensus 177 ~~~v~~~~~~~~av~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 177 GFAVNTTLDAAEVAHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred CCcEEEECCHHHHhcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHHh
Confidence 1 113689999988 999997643 33588888886 455577776432 47899987654
No 250
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=74.50 E-value=68 Score=32.04 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+.||.|+|+|.-|..++..|.+. |.- ..++++.+|++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCC
Confidence 457999999999999999998753 421 12468888864
No 251
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=74.35 E-value=9.6 Score=39.11 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=73.4
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-CcccCCCccCCchhchhhhccc-CCCCCHHHHHhccC
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIK 317 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~-GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~e~v~~vk 317 (497)
|.|+|||..|..+|-.|+. .|+. ..+.++|.+ .++. +-..+|.+....+.... ...++ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~-g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAK-GDALDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHH-HHHHhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999976654 3662 579999974 2211 11112443332221100 01134 467776
Q ss_pred CcEEEEccCCC---CC-----------CCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhcccc--CcEEEecCC
Q 010939 318 PTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASGS 379 (497)
Q Consensus 318 ptvLIG~S~~~---g~-----------Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~--Grai~AsGs 379 (497)
.|++|=+.+.+ |- +=+++.+.+.+++..-+|+-.|||. ++...-+.+++. -+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88887554443 21 1236778888899999999999995 566666655531 233666653
No 252
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=74.08 E-value=4 Score=42.25 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=28.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 86 799999987
No 253
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=74.06 E-value=7.2 Score=43.43 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=28.9
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 232 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 232 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+.++++.+++|+|||.+|.+|+..|.+ .| + +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 446888999999999777777777654 36 2 68888874
No 254
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=73.81 E-value=7 Score=41.33 Aligned_cols=94 Identities=23% Similarity=0.396 Sum_probs=54.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc--ccCCCccCCchhchhhhcc---cCC---CCCH
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHE---HEP---VKEL 309 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL--i~~~r~~~l~~~k~~~a~~---~~~---~~~L 309 (497)
+||.++|||+=|+++|..+.+. |- .=++|..|.+=. |-.+|. ..+|... ++. ..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999763 51 236776664310 111111 1123221 111 2578
Q ss_pred HHHHhccCCc-EEEEccCCCCCCCHHHHHHHHcc-CCCceEEecC
Q 010939 310 VDAVNAIKPT-ILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLS 352 (497)
Q Consensus 310 ~e~v~~vkpt-vLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLS 352 (497)
.+++++ .| ++++++++ +-+++++.|..+ .++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 888886 44 45566554 667777777522 3444444443
No 255
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=73.63 E-value=1e+02 Score=30.84 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=36.8
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEec
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFAS 377 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~As 377 (497)
.+|++.= .+.-+++.+++.++..+.|+++-++.... +.++++.-++ |-.++.-
T Consensus 173 GAD~v~v----~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~~ 225 (243)
T cd00377 173 GADGIFV----EGLKDPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVSY 225 (243)
T ss_pred CCCEEEe----CCCCCHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEEE
Confidence 4565552 22348899999999889999987655442 6899999887 6444443
No 256
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=73.31 E-value=7.1 Score=41.23 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.4
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010939 239 RFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~ 258 (497)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999965
No 257
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=73.23 E-value=25 Score=37.05 Aligned_cols=138 Identities=14% Similarity=0.259 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHHHcCCCCceec-CccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcC
Q 010939 168 LHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAG 246 (497)
Q Consensus 168 vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAG 246 (497)
+.+.++.+. +| .++++ +-.++.. +.+.+.+| .++||+|- |-.-=-+=+||=++.-.+..|++|++.||+++|-+
T Consensus 91 l~DTarvls-~y-~D~iv-~R~~~~~-~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~ 165 (334)
T PRK01713 91 MKDTARVLG-RM-YDAIE-YRGFKQS-IVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDA 165 (334)
T ss_pred HHHHHHHHH-Hh-CCEEE-EEcCchH-HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCC
Confidence 444444444 45 44433 3333332 23333333 47999994 22233356788888777777778999999999998
Q ss_pred hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccC----CCCCHHHHHhccCCcEEE
Q 010939 247 EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE----PVKELVDAVNAIKPTILI 322 (497)
Q Consensus 247 sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~----~~~~L~e~v~~vkptvLI 322 (497)
.- ++++-++.++.+ .|+ ++.++-.+++.-.. + .-+.-+.+++... ...++.+++++ +||+.
T Consensus 166 ~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVy 230 (334)
T PRK01713 166 RN--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVH 230 (334)
T ss_pred cc--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 53 478877777665 474 68888888773321 1 1111223443211 23789999998 99999
Q ss_pred Ecc
Q 010939 323 GTS 325 (497)
Q Consensus 323 G~S 325 (497)
-.+
T Consensus 231 t~~ 233 (334)
T PRK01713 231 TDV 233 (334)
T ss_pred Ecc
Confidence 753
No 258
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=72.98 E-value=11 Score=39.07 Aligned_cols=85 Identities=19% Similarity=0.337 Sum_probs=67.2
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc
Q 010939 215 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 293 (497)
Q Consensus 215 GTa~V~lAgll~Al~~~g~~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~ 293 (497)
+--.+|-+|++--++-.+.+|.+.++|++|.+. -|--+|.+|... + ..+.+++|+ |
T Consensus 134 ~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~-----n-------aTVtvcHs~---T-------- 190 (283)
T COG0190 134 GFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNA-----N-------ATVTVCHSR---T-------- 190 (283)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhC-----C-------CEEEEEcCC---C--------
Confidence 344678999999999999999999999999876 577788777652 4 335555554 1
Q ss_pred hhchhhhcccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 010939 294 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 337 (497)
Q Consensus 294 ~~k~~~a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~ 337 (497)
.+|.+.++. +|++|-.-+.++.|+.++|+
T Consensus 191 -------------~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk 219 (283)
T COG0190 191 -------------KDLASITKN--ADIVVVAVGKPHFIKADMVK 219 (283)
T ss_pred -------------CCHHHHhhh--CCEEEEecCCcccccccccc
Confidence 346677777 99999999999999999886
No 259
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=72.26 E-value=15 Score=40.44 Aligned_cols=134 Identities=11% Similarity=0.009 Sum_probs=76.7
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhcc
Q 010939 238 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 316 (497)
Q Consensus 238 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 316 (497)
.||.|+|| |..|..+|-.|+..=+ -|..+. --.++.++|.+-=..++-.-+|.+-.-++.++..-..+-.|..++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v--~g~~~~-i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd- 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEV--FGPDQP-IALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD- 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccc--ccCCCC-cccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc-
Confidence 59999999 9999999998865200 011111 124788998752222221112333222332211101234577777
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHc-cCCCceEEecCCCCCCCCCCHHHHhccccC--cEEEecCC
Q 010939 317 KPTILIGTSGQGRT--------------FTKEVVEAMAS-LNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGS 379 (497)
Q Consensus 317 kptvLIG~S~~~g~--------------Fteevi~~Ma~-~~~rPIIFaLSNPt~~~E~~peda~~~t~G--rai~AsGs 379 (497)
.|++|=+.+.+.- +=+++.+.+.+ .+..-||+-.|||- ....--+++++.. +-+|.||.
T Consensus 177 -aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViGtgT 252 (444)
T PLN00112 177 -AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFHALT 252 (444)
T ss_pred -CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEEeec
Confidence 8998866655321 12467778888 58999999999995 4555555555421 23555553
No 260
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=72.08 E-value=3.4 Score=42.18 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=33.6
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccc
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 285 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~ 285 (497)
+|++++|+++|.|--|--+++.|.. .|+ ++|.++|.+-+=.
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~v 67 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCV 67 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEecccccc
Confidence 4889999999999888877777765 486 8999999986543
No 261
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.70 E-value=1.1e+02 Score=31.45 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=23.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..++++++|+|..|+..+.++... .|- .+++.+|+.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~------~~vi~~~~~ 198 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE------SKLVVFGKH 198 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC------CcEEEEeCc
Confidence 478999999998776665555432 131 467777753
No 262
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=71.61 E-value=5.9 Score=37.04 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=29.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+|++.||||+|+|..|.-.++.|+++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 58899999999999999999988764 5 467788654
No 263
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=71.49 E-value=5.5 Score=41.66 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=28.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||+++|+|.-|+-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999865 76 899999987
No 264
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=71.19 E-value=5.9 Score=38.50 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 280 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~ 280 (497)
+|++.++||+|+|..|.-.++.|..+ | .+|+++++
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 58899999999999999888888763 4 47888875
No 265
>PRK07589 ornithine cyclodeaminase; Validated
Probab=71.07 E-value=43 Score=35.57 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=70.6
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc
Q 010939 223 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302 (497)
Q Consensus 223 gll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~ 302 (497)
+.+++-.+... .-.++.|+|+|.-+..-++.++.. ..+ ++|+++|+. ..+ ...+...+.+.
T Consensus 117 sala~~~Lar~--da~~l~iiGaG~QA~~~l~a~~~v----r~i------~~V~v~~r~----~~~---a~~~~~~~~~~ 177 (346)
T PRK07589 117 SALAAKYLARP--DSRTMALIGNGAQSEFQALAFKAL----LGI------EEIRLYDID----PAA---TAKLARNLAGP 177 (346)
T ss_pred HHHHHHHhccC--CCcEEEEECCcHHHHHHHHHHHHh----CCc------eEEEEEeCC----HHH---HHHHHHHHHhc
Confidence 34444444433 346899999999887777766653 133 788888764 111 22222222221
Q ss_pred c---CCCCCHHHHHhccCCcEEEEccCC-C--CCCCHHHHHHHHccCCCceEEec-CCCCCCCCCCHHHH
Q 010939 303 H---EPVKELVDAVNAIKPTILIGTSGQ-G--RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEA 365 (497)
Q Consensus 303 ~---~~~~~L~e~v~~vkptvLIG~S~~-~--g~Fteevi~~Ma~~~~rPIIFaL-SNPt~~~E~~peda 365 (497)
. ....+++|++++ .|+++-+... . .+|..++++. .--|-++ |+-..+.|+.++-.
T Consensus 178 ~~~v~~~~~~~~av~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 178 GLRIVACRSVAEAVEG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred CCcEEEeCCHHHHHhc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHHH
Confidence 1 113689999998 9999987643 2 4688888853 2235554 45445799998754
No 266
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=71.06 E-value=18 Score=36.87 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.||.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 5899999999999999888653 53 1468888875
No 267
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=70.72 E-value=5.1 Score=39.17 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+++|+|||.||+..|..|.. .| .++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----AN-------LKTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecc
Confidence 68999999999999988754 36 368999975
No 268
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=70.69 E-value=12 Score=38.24 Aligned_cols=103 Identities=11% Similarity=0.086 Sum_probs=56.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCc--h--hchhhhcccCCCCCHH
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ--H--FKKPWAHEHEPVKELV 310 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~--~--~k~~~a~~~~~~~~L~ 310 (497)
-...||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+. . ....+ .+.....+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~-~~~~~~~~~- 67 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHL-PPVQAYRSA- 67 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeee-cCceEEcch-
Confidence 3456899999999999999888653 5 45666666431 111101110 0 00000 000001122
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCCC
Q 010939 311 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 356 (497)
Q Consensus 311 e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSNPt~ 356 (497)
+... .+|++| ++... .-++++++.+... .+..+|..|-|=-.
T Consensus 68 ~~~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 68 EDMP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred hhcC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 2233 368776 55443 3468888888754 35667888888654
No 269
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=70.49 E-value=6.5 Score=37.38 Aligned_cols=97 Identities=18% Similarity=0.282 Sum_probs=53.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc--------------C
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--------------E 304 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~--------------~ 304 (497)
||.|+|||..|.|||-+++.+ | -++.++|.+---...-.+.+......+.+.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 689999999999999999874 6 4788999852211000000111000111100 0
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEe
Q 010939 305 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 350 (497)
Q Consensus 305 ~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFa 350 (497)
-..+|.+++ + .|.+|=.-.-.--.++++.+.+.+.+..=.||+
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceEE
Confidence 124677666 4 788886544332367788888888775555554
No 270
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=70.15 E-value=1.3e+02 Score=33.72 Aligned_cols=186 Identities=20% Similarity=0.268 Sum_probs=117.2
Q ss_pred chhhhHHHHHHHHHHHHHhhCCCcceeeecCCCCcHHH---HHHHHcCCC-----C-----c----eecCccchhHHHHH
Q 010939 160 IGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGTTH-----L-----V----FNDDIQGTASVVLA 222 (497)
Q Consensus 160 ~g~~y~~~vdefv~av~~~fGp~~lI~~EDf~~~~af~---iL~ryr~~~-----~-----~----FnDDiQGTa~V~lA 222 (497)
+..|-..+--.|+..+.+--||..=+==+|++ ...++ +++.|+..+ | . .|+-.--|+-=+..
T Consensus 156 s~nEi~r~~~~f~~el~~~iGp~~DvPapdig-~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~ 234 (514)
T KOG2250|consen 156 SDNEIERITRRFTDELIDIIGPDTDVPAPDIG-TGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVY 234 (514)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCCccccc-cCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHH
Confidence 44455556667777777777887777778887 33333 778887311 1 1 14555555544444
Q ss_pred HHHHHHHHhC--CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhc-hhh
Q 010939 223 GLISAMKFLG--GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK-KPW 299 (497)
Q Consensus 223 gll~Al~~~g--~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k-~~~ 299 (497)
++=+=++-.+ +++++.|+++-|-|--|.--+..|.+. | -+-|-+-|++|.|.+.. .+++.+ ..+
T Consensus 235 y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G------~kvvavsD~~G~l~np~--Gid~~eL~~~ 301 (514)
T KOG2250|consen 235 YVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----G------AKVVAVSDSKGVLINPD--GIDIEELLDL 301 (514)
T ss_pred HHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----C------CEEEEEEcCceeEECCC--CCCHHHHHHH
Confidence 4433334444 789999999999999998888888764 4 26678899999999864 454433 233
Q ss_pred hcccCCCCCHH----------------HHHhccCCcEEEEccCCCCCCCHHH-HHHHHccCCCceEEecCC-CCCCCCCC
Q 010939 300 AHEHEPVKELV----------------DAVNAIKPTILIGTSGQGRTFTKEV-VEAMASLNEKPIIFSLSN-PTSQSECT 361 (497)
Q Consensus 300 a~~~~~~~~L~----------------e~v~~vkptvLIG~S~~~g~Fteev-i~~Ma~~~~rPIIFaLSN-Pt~~~E~~ 361 (497)
+.....+.++. --+. +.|+++=+.++ +..|.+= -+--+++| |+|.==|| ||+ ||
T Consensus 302 ~~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~--~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-pe-- 373 (514)
T KOG2250|consen 302 ADEKKTIKSFDGAKLSYEGYIAGLPPWTLVE--KCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-PE-- 373 (514)
T ss_pred HHhhccccccccccccCccccccCcchhhHh--hCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-hh--
Confidence 33222222111 1222 58999999998 6776654 44455555 89999999 652 33
Q ss_pred HHHHhc
Q 010939 362 AEEAYT 367 (497)
Q Consensus 362 peda~~ 367 (497)
+.++++
T Consensus 374 A~~vle 379 (514)
T KOG2250|consen 374 ADEVLE 379 (514)
T ss_pred HHHHHH
Confidence 335555
No 271
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=69.58 E-value=21 Score=38.55 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=88.0
Q ss_pred CCCcee----------cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 010939 205 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 274 (497)
Q Consensus 205 ~~~~Fn----------DDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~ 274 (497)
++|++| |.-.||+--++-|++.|. ..=|....+|+.|=|--|-|||..+.- .| -|
T Consensus 170 ~fPai~VNDs~tK~~FDNrYGtgqS~~DgI~RaT---n~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-------A~ 234 (420)
T COG0499 170 KFPAINVNDSVTKSLFDNRYGTGQSLLDGILRAT---NVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-------AR 234 (420)
T ss_pred ccceEeecchhhhcccccccccchhHHHHHHhhh---ceeecCceEEEecccccchHHHHHhhc-----CC-------Ce
Confidence 677765 678999999999998754 445888999999999999999988743 14 34
Q ss_pred EEEEccCCcccCCCccCCchhchhhhc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCC
Q 010939 275 IWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 275 i~~vD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
+++.+- +|-+.-=|. +.=..-.+.||.+. .|++|=+++.-++++.|.++.| +.-.|.+=+=
T Consensus 235 ViVtEv------------DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~M----kDgaIl~N~G 296 (420)
T COG0499 235 VIVTEV------------DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKM----KDGAILANAG 296 (420)
T ss_pred EEEEec------------CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhc----cCCeEEeccc
Confidence 554332 122211111 11223568899988 9999999999999999999999 4555544322
Q ss_pred CCCCCCCCHHH
Q 010939 354 PTSQSECTAEE 364 (497)
Q Consensus 354 Pt~~~E~~ped 364 (497)
- -.-|+..+.
T Consensus 297 H-Fd~EI~~~~ 306 (420)
T COG0499 297 H-FDVEIDVAG 306 (420)
T ss_pred c-cceeccHHH
Confidence 1 236776655
No 272
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=69.57 E-value=6.7 Score=38.28 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=30.4
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+|++.|+||+|+|..|..-++.|+.+ | .++.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999999988864 5 478888874
No 273
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=69.29 E-value=6 Score=41.35 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=28.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
.+|+|+|||-+|+.+|..|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999998753 5 5789999864
No 274
>PRK06046 alanine dehydrogenase; Validated
Probab=68.70 E-value=26 Score=36.42 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=65.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc----cCCCCCHHH
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 311 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~----~~~~~~L~e 311 (497)
.-.++.|+|+|..|...++.+... .+ .++++++|++- .+ .......+.+. .....++.|
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~------i~~v~v~~r~~----~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FD------LEEVRVYDRTK----SS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CC------ceEEEEECCCH----HH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 356999999999988777666442 23 37899998861 11 22222222211 111357888
Q ss_pred HHhccCCcEEEEccC-CCCCCCHHHHHHHHccCCCceEEecC-CCCCCCCCCHHHH
Q 010939 312 AVNAIKPTILIGTSG-QGRTFTKEVVEAMASLNEKPIIFSLS-NPTSQSECTAEEA 365 (497)
Q Consensus 312 ~v~~vkptvLIG~S~-~~g~Fteevi~~Ma~~~~rPIIFaLS-NPt~~~E~~peda 365 (497)
+++ .|+++-++. ...+|..++++ +.-.|-++. +-..+.|+.++-.
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~~ 237 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEIL 237 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHHH
Confidence 885 798887653 23578888885 333466664 4446899998854
No 275
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=68.52 E-value=8.3 Score=42.20 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=29.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||+++|||..|+-+++.|+.+ |+..-+ .++|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 662211 2789999987
No 276
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=68.51 E-value=22 Score=36.52 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=63.0
Q ss_pred hCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh----------chhh
Q 010939 231 LGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF----------KKPW 299 (497)
Q Consensus 231 ~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~----------k~~~ 299 (497)
++..++..||+|.|| |-.|..+++.|++. | -+++.+|+. ..+..+.+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 344567789999997 99999988888752 5 357778763 11111111110 0111
Q ss_pred hc-ccCCCCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHccCCCceEEecC
Q 010939 300 AH-EHEPVKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 300 a~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~----------------Fteevi~~Ma~~~~rPIIFaLS 352 (497)
-. +-.....|.++++. ||++|=+.+.... .|..+++.+.++.-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11112356777775 9999988775432 2447888887765568998754
No 277
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=68.31 E-value=22 Score=34.74 Aligned_cols=60 Identities=23% Similarity=0.426 Sum_probs=41.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccC
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 317 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 317 (497)
||++.|| |-.|-.+++.|.+ .| .+++.+++. ..+ +. ...++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d-~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLD-LT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccC-CC-----------CHHHHHHHHHhCC
Confidence 6899996 9888888888765 25 367777764 111 21 1245778888889
Q ss_pred CcEEEEccCCC
Q 010939 318 PTILIGTSGQG 328 (497)
Q Consensus 318 ptvLIG~S~~~ 328 (497)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887653
No 278
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.24 E-value=26 Score=33.45 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=24.8
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 235 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 235 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+++.+++|.|+ |..|..+++.+.+ +| -+++++|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 56779999996 6667777776654 36 368888775
No 279
>PRK14852 hypothetical protein; Provisional
Probab=68.05 E-value=11 Score=45.23 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++|++.||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468999999999999999999888764 86 899999987
No 280
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=67.90 E-value=6.7 Score=41.15 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=27.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 284 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi 284 (497)
|+|+|||.||..+|..|.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999999443 123 689999987544
No 281
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=67.60 E-value=9.5 Score=41.33 Aligned_cols=81 Identities=14% Similarity=0.029 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccC---Cchhchhhhc
Q 010939 225 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLES---LQHFKKPWAH 301 (497)
Q Consensus 225 l~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~---l~~~k~~~a~ 301 (497)
+.++.-....|...|++++|-+.-..++++.+.+ .|+.. ..+ ++.++.+. +.+. .-+.
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~--------~~~~~~~~~~~~~~~-~~~~- 359 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAA--------VTTTGSPLLQKLPVE-TVVI- 359 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEE--------EeCCCCHHHHhCCcC-cEEe-
Confidence 3444444446778999999988889999999764 48732 111 12211110 1111 0011
Q ss_pred ccCCCCCHHHHHhccCCcEEEEccC
Q 010939 302 EHEPVKELVDAVNAIKPTILIGTSG 326 (497)
Q Consensus 302 ~~~~~~~L~e~v~~vkptvLIG~S~ 326 (497)
.+...|++.++..+||++||-|-
T Consensus 360 --~D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 360 --GDLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred --CCHHHHHHHHhhcCCCEEEECcc
Confidence 12246788888889999998553
No 282
>PRK06270 homoserine dehydrogenase; Provisional
Probab=67.49 E-value=39 Score=35.41 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=64.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhc-hhhhcccC---------
Q 010939 238 QRFLFLGAGEAGTGIAELIALE---ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK-KPWAHEHE--------- 304 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~---~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k-~~~a~~~~--------- 304 (497)
.||.++|.|..|.+++++|.+. +.++.|+. -+=+-++|++|.+.+.+. ++..+ ..++++..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 5899999999999999998653 22223431 122457799999887652 33221 22332211
Q ss_pred CCCCHHHHHhccCCcEEEEccCCC---CCCCHHHHHHHHccCCCceEE
Q 010939 305 PVKELVDAVNAIKPTILIGTSGQG---RTFTKEVVEAMASLNEKPIIF 349 (497)
Q Consensus 305 ~~~~L~e~v~~vkptvLIG~S~~~---g~Fteevi~~Ma~~~~rPIIF 349 (497)
...++.|.++...+|++|=++... +-...++++..-+ +..+||.
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~-~GkhVVt 123 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE-RGKHVVT 123 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH-CCCEEEc
Confidence 123889999888899999776531 2223455444433 4567776
No 283
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=66.90 E-value=5.5 Score=36.87 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=57.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-cCCCCCHHHHHhcc
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI 316 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e~v~~v 316 (497)
.||-|+|.|..|.++|+.|... |. +++.+|+. ..+ . +.+.+. .....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~~---~----~~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PEK---A----EALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HHH---H----HHHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hhh---h----hhhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999653 63 68877753 111 1 223222 1234789999988
Q ss_pred CCcEEEEccCCCCCCCHHHHHH--HHc-cCCCceEEecCCCCCCCCCCHHHHhcc
Q 010939 317 KPTILIGTSGQGRTFTKEVVEA--MAS-LNEKPIIFSLSNPTSQSECTAEEAYTW 368 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~--Ma~-~~~rPIIFaLSNPt~~~E~~peda~~~ 368 (497)
.|++|=+=..+ .=.++++.. +.+ ..+..||.=+|+-+ ||.+-+-+-++
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~~ 108 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAERL 108 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhhh
Confidence 68777432211 123455554 333 34666777777765 55555444433
No 284
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=66.85 E-value=15 Score=40.34 Aligned_cols=95 Identities=14% Similarity=0.196 Sum_probs=61.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc--cCCCCCHHHHHhcc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 316 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~--~~~~~~L~e~v~~v 316 (497)
.|-|+|.|.-|..+|..|... |. ++++.|+. ..+ ....++.+... .....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~~---~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PEK---TDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HHH---HHHHHhhccCCCCceecCCHHHHHhhc
Confidence 377999999999999999763 63 57777764 111 11111111100 11235788888654
Q ss_pred -CCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCC
Q 010939 317 -KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSN 353 (497)
Q Consensus 317 -kptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSN 353 (497)
+|+++| ++-+++...+++++.+..+ .+.-||.=.||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4444556778888887765 56789999988
No 285
>PRK07236 hypothetical protein; Provisional
Probab=66.83 E-value=8.2 Score=40.16 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 010939 235 LADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
.+..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456799999999999999999876
No 286
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=66.35 E-value=23 Score=34.60 Aligned_cols=147 Identities=15% Similarity=0.188 Sum_probs=75.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHH
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 313 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~ee-A~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v 313 (497)
..++||.|+|.|..+. +|.-+...|.. ++..+- +..-+.+.|..-+++.-- +-..+-..|++. |....
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 4568999999998875 77777765542 111000 011122222222222211 112334455543 32222
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeeeCC
Q 010939 314 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVP 393 (497)
Q Consensus 314 ~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsGsPf~pv~~~G~~~~p 393 (497)
-+-|++|+.|..|. |+++++.+. -|.+ .+-+.|.-||.|-.|+. -..
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~-----------------------~Ak~-~G~~vI~IT~~~~s~l~-----~l~ 154 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE-----------------------AAVT-RDMTIVALTGYDGGELA-----GLL 154 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH-----------------------HHHH-CCCEEEEEeCCCCChhh-----hcc
Confidence 24799999999874 788888764 2222 23344445664433331 112
Q ss_pred CCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccC
Q 010939 394 GQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 433 (497)
Q Consensus 394 ~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v 433 (497)
+.++=....|.-- ..+-.++-+...+.|.+++
T Consensus 155 ~~~D~~i~ip~~~--------~~~v~e~h~~i~H~l~~~v 186 (196)
T PRK10886 155 GPQDVEIRIPSHR--------SARIQEMHMLTVNCLCDLI 186 (196)
T ss_pred ccCCEEEEcCCCc--------hHHHHHHHHHHHHHHHHHH
Confidence 2345555666322 2234666677777777776
No 287
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=66.10 E-value=12 Score=32.46 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=49.1
Q ss_pred CcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCCcEEEE
Q 010939 244 GAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIG 323 (497)
Q Consensus 244 GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkptvLIG 323 (497)
|.|..|.+++++|...-.. -+ -+=..++||++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999764211 01 2346677777444332 1122222233478999999788999999
Q ss_pred ccCCCCCCCHHHHHHHHccCCCceEE
Q 010939 324 TSGQGRTFTKEVVEAMASLNEKPIIF 349 (497)
Q Consensus 324 ~S~~~g~Fteevi~~Ma~~~~rPIIF 349 (497)
+++. ...++-+.+.+. +...+|-
T Consensus 66 ~t~~-~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTSS-EAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SSC-HHHHHHHHHHHH--TTCEEEE
T ss_pred CCCc-hHHHHHHHHHHH--CCCeEEE
Confidence 9543 344444444444 2344443
No 288
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=65.98 E-value=4 Score=42.78 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIALE 259 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~ 259 (497)
.||+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999764
No 289
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=65.85 E-value=25 Score=36.67 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHH
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALE 259 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~ 259 (497)
|++.||.|+|+|.-|-++|..|.+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 5788999999999999999998753
No 290
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=65.83 E-value=12 Score=41.22 Aligned_cols=97 Identities=21% Similarity=0.237 Sum_probs=62.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhc-c--cCCCCCHHHHHhc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-E--HEPVKELVDAVNA 315 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~-~--~~~~~~L~e~v~~ 315 (497)
+|-|+|.|.-|.++|..|.. .|. +++++|++ .++ ..+....-.. . .....++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~-----~G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIAS-----RGF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHH-----CCC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 68999999999999999975 364 58888874 221 1111111000 0 1124689999976
Q ss_pred c-CCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010939 316 I-KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 355 (497)
Q Consensus 316 v-kptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSNPt 355 (497)
. +|+++| ++-.++...+++++.+..+ .+..||.=+||=.
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 5 588555 3434456778888777654 5678899899843
No 291
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=65.41 E-value=9 Score=42.05 Aligned_cols=124 Identities=16% Similarity=0.343 Sum_probs=80.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-cCC-----CCCH
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKEL 309 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~-----~~~L 309 (497)
+..||+|+||||.. -.+++...+.+.+.++ ...|||+|-+ .+|.+..-..-+.+.+. ..+ ..|+
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999984 5677777777766775 3789999975 44432111111222222 122 2589
Q ss_pred HHHHhccCCcEEEEc--------------------------cCCCCCCC--------HHHHHHHHccCCCceEEecCCCC
Q 010939 310 VDAVNAIKPTILIGT--------------------------SGQGRTFT--------KEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 310 ~e~v~~vkptvLIG~--------------------------S~~~g~Ft--------eevi~~Ma~~~~rPIIFaLSNPt 355 (497)
.||+++ +|.+|=. -++||.|. -|+++.|-+.|+.--++=-+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999988 6665522 23334432 38899999999999999999997
Q ss_pred CCCCCCHHHHhccccC-cEE
Q 010939 356 SQSECTAEEAYTWSQG-RAI 374 (497)
Q Consensus 356 ~~~E~~peda~~~t~G-rai 374 (497)
+++|- -+++|+.. |.|
T Consensus 150 --~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred --HHHHH-HHHHhCCCCcEE
Confidence 66653 44555554 444
No 292
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=65.34 E-value=6.6 Score=36.08 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=28.3
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 241 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 241 v~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998863 1123568999999755
No 293
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=65.19 E-value=1.8e+02 Score=30.55 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=86.1
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCC--------CCCCCHHHHhccccCcEEEec-CCC
Q 010939 310 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS--------QSECTAEEAYTWSQGRAIFAS-GSP 380 (497)
Q Consensus 310 ~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~--------~~E~~peda~~~t~Grai~As-GsP 380 (497)
.++=+..+|+++|+.++.+ +.-.-+.+=.++-+|=|.+=.-||.. ..+.|.+++.+-+- .+..+ |
T Consensus 102 ~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~--~~~~~ig-- 175 (307)
T COG1250 102 AELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVV--EFAKKIG-- 175 (307)
T ss_pred HHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHH--HHHHHcC--
Confidence 3444456799999988864 43333333224455558888899973 35667676655321 11111 3
Q ss_pred CCccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCCcchhhHHHHHH
Q 010939 381 FDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAE 460 (497)
Q Consensus 381 f~pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~A 460 (497)
=.||. ..+.||-.-|-...|.+.-+..+..---.|.+.+-++.+.-+.+- +-|+.-.+.+...+...
T Consensus 176 K~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p----------mGpf~l~D~~GlD~~~~ 242 (307)
T COG1250 176 KTPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLP----------MGPFELADLIGLDVMLH 242 (307)
T ss_pred CCCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCC----------ccHHHHHHHHhHHHHHH
Confidence 11122 357899999999999998888887766678888888776543321 33444455666666666
Q ss_pred HHHHHHH
Q 010939 461 VAAKAYE 467 (497)
Q Consensus 461 Va~~A~~ 467 (497)
|++..++
T Consensus 243 i~~~~~~ 249 (307)
T COG1250 243 IMKVLNE 249 (307)
T ss_pred HHHHHHH
Confidence 6666664
No 294
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.14 E-value=9.1 Score=40.76 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=28.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++++.+++|+|+|.+|.++|+.|... | .+++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 36788999999999999999998753 6 357777765
No 295
>PLN02688 pyrroline-5-carboxylate reductase
Probab=65.12 E-value=14 Score=36.42 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=54.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ccCCcccCCCccCCchhchhhhccc-CCCCCHHHHHhcc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAI 316 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~v-D~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~e~v~~v 316 (497)
||.|+|.|.-|..+++.|.+. |.- -..+|+++ |+. ..+ . +.+.... ....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~----~~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---R----DVFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---H----HHHHHcCCEEeCChHHHHhc-
Confidence 789999999999999998753 420 12467776 542 111 1 1222111 112567777765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEecCCCC
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 355 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFaLSNPt 355 (497)
.|++| ++-.+ -..+++++..... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 67665 33333 3567777776543 3445666665554
No 296
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=65.11 E-value=23 Score=40.89 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=61.7
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCC--------CCCCCHHHHhccccCcEEEecCCCCCc
Q 010939 312 AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS--------QSECTAEEAYTWSQGRAIFASGSPFDP 383 (497)
Q Consensus 312 ~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~--------~~E~~peda~~~t~Grai~AsGsPf~p 383 (497)
+=+.++|+++|..++.. ++-.-|....++-+|=|.+=..||.. ..+-|.++..++.-. |+..-=..|
T Consensus 414 l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~p 488 (715)
T PRK11730 414 VEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKTP 488 (715)
T ss_pred HHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCce
Confidence 33456899999887764 65444444444555558888999963 233344444433110 111112455
Q ss_pred cccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHH
Q 010939 384 FEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 426 (497)
Q Consensus 384 v~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA 426 (497)
|..+ +.||-.=|-..+|-+--+..+...- .|.+-+-+|.
T Consensus 489 v~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 489 IVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred EEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 5552 6889888988888766555444433 5666666554
No 297
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=65.01 E-value=9.6 Score=37.63 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=57.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhh--cccCCCCCHHHH-Hh
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA--HEHEPVKELVDA-VN 314 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a--~~~~~~~~L~e~-v~ 314 (497)
.+|+|+|+|..|..+|+.|.+. | .++.++|++--.... .+++..--.+ -+....+.|+++ +.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~~---~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVEE---FLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHHH---HhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 3799999999999999999763 5 578888886222111 0110000000 011222457776 55
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCceEEe-cCCCC
Q 010939 315 AIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFS-LSNPT 355 (497)
Q Consensus 315 ~vkptvLIG~S~~~g~Fteevi~~Ma~~-~~rPIIFa-LSNPt 355 (497)
. .|++|-+++.. -..-++-.|+.. ..-|-|.+ ..||.
T Consensus 66 ~--aD~vva~t~~d--~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 66 D--ADAVVAATGND--EVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred c--CCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 5 99999888864 444556666633 34444444 45554
No 298
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=64.98 E-value=10 Score=37.62 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=27.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
.|+|+|||-+|+.+|..|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999999876 36 48999999833
No 299
>PRK06847 hypothetical protein; Provisional
Probab=64.90 E-value=8.6 Score=39.39 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=25.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..+|+|+|||.||+..|..|.. .|+ ++.++|+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~-----~g~-------~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR-----AGI-------AVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEecC
Confidence 4589999999999999998864 365 46677764
No 300
>PRK06184 hypothetical protein; Provisional
Probab=64.84 E-value=8.3 Score=41.86 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=28.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
++..|+|+|||.+|+..|-+|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 46789999999999999988865 475 578888864
No 301
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=64.65 E-value=33 Score=37.03 Aligned_cols=132 Identities=12% Similarity=0.088 Sum_probs=73.4
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcC--eEEEE--ccCCcccCCCccCCchhchhhhcccCCCCCHHHH
Q 010939 238 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRK--KIWLV--DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 312 (497)
Q Consensus 238 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~--~i~~v--D~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~ 312 (497)
.||.|+|| |..|..+|-.|+.. |+-.| -+ -+.|+ |.+-=..++-.-+|.+-.-++.+...-..+-.+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~-----~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~ 117 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG-----EVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEV 117 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHH
Confidence 59999999 99999999988653 55211 01 34445 5431111111111322222332211101244577
Q ss_pred HhccCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCceEEecCCCCCCCCCCHHHHhcccc--CcEEE
Q 010939 313 VNAIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIF 375 (497)
Q Consensus 313 v~~vkptvLIG~S~~~g~--Ft------------eevi~~Ma~~~-~rPIIFaLSNPt~~~E~~peda~~~t~--Grai~ 375 (497)
+++ .|++|=+.+.+.- -| +++.+.+.++. +.-||+--|||. ....--+++++. -+-+|
T Consensus 118 ~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv---Dv~t~v~~k~sg~~~~rvi 192 (387)
T TIGR01757 118 FED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC---NTNALIAMKNAPNIPRKNF 192 (387)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH---HHHHHHHHHHcCCCcccEE
Confidence 777 8999866665421 22 46777777855 899999999995 444445555542 13466
Q ss_pred ecCCCC
Q 010939 376 ASGSPF 381 (497)
Q Consensus 376 AsGsPf 381 (497)
.||+-.
T Consensus 193 G~gT~L 198 (387)
T TIGR01757 193 HALTRL 198 (387)
T ss_pred Eecchh
Confidence 666433
No 302
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.21 E-value=10 Score=40.90 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=24.1
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHH
Q 010939 230 FLGGSLADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 230 ~~g~~l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
..+.+++.++++|+|+|.+|+.+|+.|.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 34556788899999999999999988864
No 303
>PRK08163 salicylate hydroxylase; Provisional
Probab=64.15 E-value=8.7 Score=39.76 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=25.7
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..+|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~-----~g~-------~v~v~Er~ 36 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR-----QGI-------KVKLLEQA 36 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEeeC
Confidence 4689999999999999988764 364 46667664
No 304
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=64.07 E-value=25 Score=36.82 Aligned_cols=109 Identities=19% Similarity=0.328 Sum_probs=66.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCC--CCCHH
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP--VKELV 310 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~--~~~L~ 310 (497)
++.+..||.++|+|.-|+++|-.|+.- |++ +++.++|-.==-.++-.=+|+ |-.+|-+.+.- .++..
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MDLq-H~s~f~~~~~V~~~~Dy~ 84 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMDLQ-HGSAFLSTPNVVASKDYS 84 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhhhc-cccccccCCceEecCccc
Confidence 456678999999999999999988763 774 678889965211222111132 33455543211 11221
Q ss_pred HHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCceEEecCCCC
Q 010939 311 DAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 311 e~v~~vkptvLIG~S~~~g~--------------Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
+-+ ..++.|=+.+...- +=+.+|....+..++-|+.--|||.
T Consensus 85 -~sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV 140 (332)
T KOG1495|consen 85 -VSA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV 140 (332)
T ss_pred -ccC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch
Confidence 112 24555544443322 2246777888899999999999998
No 305
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=63.82 E-value=11 Score=30.34 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=23.6
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 242 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 242 ~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
|+|||.+|+..|..|.+. | .++.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999988653 4 58999998744
No 306
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=63.57 E-value=8.2 Score=40.86 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 79999999999999988764 374 57788876
No 307
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=63.51 E-value=4.8 Score=41.40 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=27.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
+|||+|+|.||+..|+.+.... . ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5899999999999988875421 1 1358999998754
No 308
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=63.34 E-value=10 Score=40.83 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=29.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+.+..+|+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4567899999999999999988854 36 468899875
No 309
>PRK07233 hypothetical protein; Provisional
Probab=63.34 E-value=7.9 Score=40.19 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=25.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||+|+|||-||+..|..|.+ .| .++.++++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-----~G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-----RG-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEEeC
Confidence 68999999999999988865 36 468888877
No 310
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=63.28 E-value=1.5e+02 Score=34.29 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=88.6
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCC--------CCCCHHHHhccccCcEEEecCCCCC
Q 010939 311 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ--------SECTAEEAYTWSQGRAIFASGSPFD 382 (497)
Q Consensus 311 e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~--------~E~~peda~~~t~Grai~AsGsPf~ 382 (497)
+.-+.++|+++|..++.+ ++-.-+..-.++-+|=|.+=.-||... .+-|.+++.++... |+..-=..
T Consensus 405 ~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~~gk~ 479 (699)
T TIGR02440 405 DIEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVA---LAKKQGKT 479 (699)
T ss_pred HHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcCCe
Confidence 334556899999888764 544444333356667788888898742 33455555554321 11112245
Q ss_pred ccccCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHHHHHhccCCccCCCCCCccCCCCCcchhhHHHHHHHH
Q 010939 383 PFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVA 462 (497)
Q Consensus 383 pv~~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~AVa 462 (497)
||..+ +.||..=|-..+|-+--++.+..-- ++.+-+-.|.+.+ |.-..|+.-+..+-..+...|.
T Consensus 480 pv~v~---d~pGfi~nRl~~~~~~Ea~~l~~~G-~~~~dID~a~~~~-----------G~p~GPf~l~D~vGld~~~~i~ 544 (699)
T TIGR02440 480 PIVVA---DKAGFYVNRILAPYMNEAARLLLEG-EPVEHIDKALVKF-----------GFPVGPITLLDEVGIDVGAKIS 544 (699)
T ss_pred EEEEc---cccchHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHc-----------CCCcCHHHHHHHhchHHHHHHH
Confidence 56552 5799999999999887776665533 5777777766421 1112345545556666666776
Q ss_pred HHHHHc-CCCCCCCCchhHHHHHHh
Q 010939 463 AKAYEL-GLATRLPPPKDLVKYAES 486 (497)
Q Consensus 463 ~~A~~~-GlA~~~~~p~d~~~~i~~ 486 (497)
+..+++ |- ....|+-+.++|++
T Consensus 545 ~~l~~~~~~--~~~~~~~l~~~v~~ 567 (699)
T TIGR02440 545 PILEAELGE--RFKAPAVFDKLLSD 567 (699)
T ss_pred HHHHHhcCC--CCCCcHHHHHHHHC
Confidence 665543 22 12223445566655
No 311
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=62.86 E-value=15 Score=40.89 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=28.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+-...+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999987754 363 58889864
No 312
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=62.47 E-value=51 Score=34.69 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=61.9
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhh-hcccCCCCC
Q 010939 230 FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-AHEHEPVKE 308 (497)
Q Consensus 230 ~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~-a~~~~~~~~ 308 (497)
..|.++...++-|+|-|..|..+|+.+. ++ |+ +|...|++.. +...+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 4457789999999999999999999997 43 54 4555665432 1111111 11 123
Q ss_pred HHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHccCCCceEEecCC
Q 010939 309 LVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSN 353 (497)
Q Consensus 309 L~e~v~~vkptvLIG~S~----~~g~Fteevi~~Ma~~~~rPIIFaLSN 353 (497)
|.|.++. .|+++-.-- ..++|+++.++.|. +.-++.=.|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaR 237 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTAR 237 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCC
Confidence 8888887 899885421 12689999999995 4455554443
No 313
>PRK00536 speE spermidine synthase; Provisional
Probab=62.44 E-value=8.1 Score=39.47 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=50.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCC-CCHHHHHhcc
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV-KELVDAVNAI 316 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~-~~L~e~v~~v 316 (497)
.||+|+|.|-.| .++-++.. - +++.|||-++-+++--.+.++..+..|..++-.+ ..+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-----~-------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-----D-------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-----C-------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 799999999984 55655543 1 3899999999777544344665555443322111 1222211 13
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMA 340 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma 340 (497)
+-||+|-=|. |+++-.+.+.
T Consensus 139 ~fDVIIvDs~----~~~~fy~~~~ 158 (262)
T PRK00536 139 KYDLIICLQE----PDIHKIDGLK 158 (262)
T ss_pred cCCEEEEcCC----CChHHHHHHH
Confidence 6889986553 6776665543
No 314
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=62.32 E-value=10 Score=41.19 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=27.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+.+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 45799999999999999988864 36 368999976
No 315
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=62.21 E-value=9.9 Score=43.08 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=28.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++.||+|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 57899999999999999988865 363 58888875
No 316
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=62.13 E-value=33 Score=34.68 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G-~s~eeA~~~i~~vD~~ 281 (497)
+||.|+|+|.-|..++..|... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999988653 4 21 2467777764
No 317
>PRK09126 hypothetical protein; Provisional
Probab=61.99 E-value=9.7 Score=39.36 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=26.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..|+|+|||.||+..|..|.+ .|+ ++.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-----SGL-------KVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEeCC
Confidence 4579999999999999988865 375 46777765
No 318
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=61.77 E-value=9.5 Score=39.86 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.|+|+|||.||+..|..|.+ .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 58999999999999988764 364 57778876
No 319
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=61.77 E-value=8.9 Score=39.95 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=26.6
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+.+|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD-----SGL-------RIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEecC
Confidence 4689999999999999998865 364 57777765
No 320
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=61.74 E-value=6 Score=40.32 Aligned_cols=32 Identities=38% Similarity=0.838 Sum_probs=27.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..+-|+|||--|-|||.....+ |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678999999999999988764 75 79999985
No 321
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=61.61 E-value=10 Score=40.29 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=28.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
+-.+||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 3479999999999999988865 36 5799999874
No 322
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=61.60 E-value=33 Score=36.33 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
.|++.+|.|+|.|+-|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4778899999999999999999865
No 323
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=61.43 E-value=12 Score=39.66 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 284 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi 284 (497)
+||||+|+|.||+..|..|... |- .-+|.++|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999988542 31 1379999987543
No 324
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=61.36 E-value=8.1 Score=41.36 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999998642 21 2468888876
No 325
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=61.34 E-value=11 Score=41.06 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.4
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 4556799999999999999988865
No 326
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=61.30 E-value=11 Score=40.87 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=29.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
+.-+++|+|||-+|+++|..|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 345899999999999999999764 763 388888874
No 327
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=61.07 E-value=4.7 Score=42.24 Aligned_cols=118 Identities=22% Similarity=0.249 Sum_probs=60.4
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCC----chhchhhhc-ccCCCCCHHHHHh
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL----QHFKKPWAH-EHEPVKELVDAVN 314 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l----~~~k~~~a~-~~~~~~~L~e~v~ 314 (497)
|+++|+|..|-.+++.|.+. ... .++.+.|++ ..+.+.+ ...+..+.+ +.....+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 78999999999999988653 111 278888886 1111101 011111111 1122245888898
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecC
Q 010939 315 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASG 378 (497)
Q Consensus 315 ~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsG 378 (497)
. .|++|-+++.. +++.++++-.++ ..+.|= .|..+...+-.-++|.+ .+-.+|.++|
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD-~~~~~~~~~~l~~~a~~-~g~~~l~~~G 123 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIEA-GVHYVD-TSYVTEEMLALDEEAKE-AGVTALPGCG 123 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE-SS-HHHHHHHCHHHHHH-TTSEEE-S-B
T ss_pred c--CCEEEECCccc--hhHHHHHHHHHh-CCCeec-cchhHHHHHHHHHHHHh-hCCEEEeCcc
Confidence 8 79999988864 788888876543 334444 22212112222233332 2334566676
No 328
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=60.99 E-value=9.4 Score=41.57 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=33.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+.|++-+|+++|+|+.|+-+++-|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999999875 86 799999987
No 329
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=60.48 E-value=8.6 Score=39.77 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=48.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccC----CCCC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE----PVKE 308 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~----~~~~ 308 (497)
++|++.+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-+ ... +| +..|-.... ...+
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL---~RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DV---CTNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hh---ccccccccccCCcHHHH
Confidence 568899999999999999999999875 86 79999998732 211 12 222222111 1134
Q ss_pred HHHHHhccCCcEEEE
Q 010939 309 LVDAVNAIKPTILIG 323 (497)
Q Consensus 309 L~e~v~~vkptvLIG 323 (497)
..+-++.++|+|-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 556666677777763
No 330
>PRK06475 salicylate hydroxylase; Provisional
Probab=60.15 E-value=10 Score=39.80 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~ 258 (497)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999987754
No 331
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=60.12 E-value=41 Score=35.17 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=50.7
Q ss_pred cCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCcc
Q 010939 211 DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE 290 (497)
Q Consensus 211 DDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~ 290 (497)
|+..+.-+=-+|.-+.+.........+.+++++|||+-|+..+.+. +..|. ++|+++|.. ..|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a-----~~~Ga------~~Viv~d~~----~~R-- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALA-----KLLGA------SVVIVVDRS----PER-- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHH-----HHcCC------ceEEEeCCC----HHH--
Confidence 4445544444555544422222222333999999999997763222 22464 688888763 222
Q ss_pred CCchhchhhhcc--cCCCC-CHHHHH----hccCCcEEEEccCC
Q 010939 291 SLQHFKKPWAHE--HEPVK-ELVDAV----NAIKPTILIGTSGQ 327 (497)
Q Consensus 291 ~l~~~k~~~a~~--~~~~~-~L~e~v----~~vkptvLIG~S~~ 327 (497)
|.-.++.++-+ ..... ...+.+ .+...|+.|=+|+.
T Consensus 206 -l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 206 -LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred -HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 22222222211 11111 233333 22368999999983
No 332
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=59.59 E-value=45 Score=35.39 Aligned_cols=148 Identities=8% Similarity=0.148 Sum_probs=73.5
Q ss_pred CceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc------cCCCCCH
Q 010939 237 DQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE------HEPVKEL 309 (497)
Q Consensus 237 d~riv~~G-AGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~------~~~~~~L 309 (497)
..||.|+| +|.-|-.+|..+..+ |. .++++|++-. +... ..+.+ .-+....
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~~~------~~~~----~~~~~aDlVilavP~~~~ 155 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQDDW------DRAE----DILADAGMVIVSVPIHLT 155 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCCcc------hhHH----HHHhcCCEEEEeCcHHHH
Confidence 36899999 999999999998763 63 5888887521 0010 11111 0111122
Q ss_pred HHHHh---ccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHHHhccccCcEEEec-CCCCCccc
Q 010939 310 VDAVN---AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFAS-GSPFDPFE 385 (497)
Q Consensus 310 ~e~v~---~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~As-GsPf~pv~ 385 (497)
.++++ ..+|+.+|-=- |..+..++++|++....+ |-=+-|-.-+|... + .|+.++.+ |.+-..+.
T Consensus 156 ~~~~~~l~~l~~~~iv~Dv---~SvK~~~~~~~~~~~~~~--fvg~HPm~G~~~~~-----~-~~~~vv~~~~~~~~~~~ 224 (374)
T PRK11199 156 EEVIARLPPLPEDCILVDL---TSVKNAPLQAMLAAHSGP--VLGLHPMFGPDVGS-----L-AKQVVVVCDGRQPEAYQ 224 (374)
T ss_pred HHHHHHHhCCCCCcEEEEC---CCccHHHHHHHHHhCCCC--EEeeCCCCCCCCcc-----c-CCCEEEEcCCCCchHHH
Confidence 22222 25665555322 246678888888765555 43344444444432 2 34444443 32321111
Q ss_pred cCCeeeCCCCccccccchhhhHHHHHcCCcccC
Q 010939 386 YGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVH 418 (497)
Q Consensus 386 ~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~it 418 (497)
. =+.+.-.=+.+......-.-.-+++-..++|
T Consensus 225 ~-~~~l~~~lG~~v~~~~~~~HD~~~a~vshLp 256 (374)
T PRK11199 225 W-LLEQIQVWGARLHRISAVEHDQNMAFIQALR 256 (374)
T ss_pred H-HHHHHHHCCCEEEECCHHHHHHHHHHHHHHH
Confidence 0 0011111233555556666666666666663
No 333
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=59.49 E-value=31 Score=36.30 Aligned_cols=38 Identities=26% Similarity=0.157 Sum_probs=26.5
Q ss_pred CCHHHHHhccCCcE-EEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010939 307 KELVDAVNAIKPTI-LIGTSGQGRTFTKEVVEAMASLNEKPIIF 349 (497)
Q Consensus 307 ~~L~e~v~~vkptv-LIG~S~~~g~Fteevi~~Ma~~~~rPIIF 349 (497)
+.|.+..+. .|+ ++|-|-..+ |..-++++|+ +..|||+
T Consensus 311 ~el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 311 GELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 346666666 887 777665333 5556899998 6888886
No 334
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=59.33 E-value=13 Score=38.27 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=27.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..+|+|+|||.||+..|-.|...- + .|+ ++.++|++
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~-~-~G~-------~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS-H-GGL-------PVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc-c-CCC-------EEEEEeCC
Confidence 3457999999999999988886520 0 164 68888884
No 335
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=58.81 E-value=13 Score=38.12 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=28.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
...|+|+|||.+|+.+|-.|.+. | .++.++|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecccC
Confidence 34699999999999999888652 6 47999998643
No 336
>PRK13938 phosphoheptose isomerase; Provisional
Probab=58.71 E-value=35 Score=33.26 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=45.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHh
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 314 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~ee-A~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~ 314 (497)
.+.||.++|.|..| .+|..+...|.. +++.+- +-..+-+......++.- .. -..+-..|++. +...+
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~-~n-d~~~~~~~~~~------~~~~~- 111 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAV-AN-DYDYDTVFARA------LEGSA- 111 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHh-hc-cccHHHHHHHH------HHhcC-
Confidence 56899999999987 566666665532 111100 00111111111111100 00 01122233322 22222
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH
Q 010939 315 AIKPTILIGTSGQGRTFTKEVVEAMA 340 (497)
Q Consensus 315 ~vkptvLIG~S~~~g~Fteevi~~Ma 340 (497)
-+-|++|++|..| =|+++++.+.
T Consensus 112 -~~~DllI~iS~SG--~t~~vi~a~~ 134 (196)
T PRK13938 112 -RPGDTLFAISTSG--NSMSVLRAAK 134 (196)
T ss_pred -CCCCEEEEEcCCC--CCHHHHHHHH
Confidence 2478999999987 6999998875
No 337
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=58.67 E-value=11 Score=38.87 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=25.1
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
|+|+|||.||+..|..+.. .| .++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g-------~~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PG-------LRVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccCC
Confidence 7999999999999977653 36 4788999764
No 338
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=58.52 E-value=12 Score=37.54 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
.+..|+|+|||.||+..|-.+.. .|+ ++.++|++--
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~~ 59 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKLS 59 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCCC
Confidence 35689999999999999887754 363 6888998643
No 339
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=58.22 E-value=47 Score=29.15 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=36.6
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcc--CCCceEEecCCCCCCCCCCHHHHhccccCcEEEecC-CCCCccc
Q 010939 318 PTILIGTSGQGRTFTKEVVEAMASL--NEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASG-SPFDPFE 385 (497)
Q Consensus 318 ptvLIG~S~~~g~Fteevi~~Ma~~--~~rPIIFaLSNPt~~~E~~peda~~~t~Grai~AsG-sPf~pv~ 385 (497)
-|++|++|..| =|+|+++.+... ..-|+|-==+||.+ . .-+.+|-...+.+| +++.+++
T Consensus 48 ~dl~I~iS~SG--~t~~~~~~~~~a~~~g~~vi~iT~~~~s--~-----la~~ad~~l~~~~~~~~~~~~~ 109 (120)
T cd05710 48 KSVVILASHSG--NTKETVAAAKFAKEKGATVIGLTDDEDS--P-----LAKLADYVIVYGFEIDAVEEKY 109 (120)
T ss_pred CcEEEEEeCCC--CChHHHHHHHHHHHcCCeEEEEECCCCC--c-----HHHhCCEEEEccCCcCccchHH
Confidence 58999999987 688998888643 33465554444542 1 12234545556777 6666664
No 340
>PLN02240 UDP-glucose 4-epimerase
Probab=58.17 E-value=24 Score=35.77 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=59.2
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCch------hchhhhc-ccCC
Q 010939 234 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH------FKKPWAH-EHEP 305 (497)
Q Consensus 234 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~------~k~~~a~-~~~~ 305 (497)
.|+..||+|.|| |--|..+++.|.+ .| .+++.+|+..--.......+.. ....+.. +...
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~-----~g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLL-----AG-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 8888888888765 25 4688888642100000000000 0011111 1112
Q ss_pred CCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHccCCCceEEecC
Q 010939 306 VKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 306 ~~~L~e~v~~vkptvLIG~S~~~g~----------------Fteevi~~Ma~~~~rPIIFaLS 352 (497)
..++.++++..++|++|=+.+.... -+..+++.|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2457777776789999977764321 1235667776665567887543
No 341
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=58.15 E-value=8.2 Score=33.25 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=27.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
+|++.+++++|+|..|..=+++|+++ | .++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999999888888653 4 5788887764
No 342
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=57.87 E-value=41 Score=35.86 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||.|+|+|..|..+|..|... | .+++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 799999999999999998753 6 358888874
No 343
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=57.83 E-value=12 Score=39.68 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=33.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
.+|++|=||++|||..|--++++|+.. |+ ++|-+||-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999874 76 77888887643
No 344
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=57.81 E-value=13 Score=39.80 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+++|+|||.||+.+|..|.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 68999999999999988864 25 478888874
No 345
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=57.55 E-value=14 Score=38.83 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=30.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC--CcccCCC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK--GLIVSSR 288 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~--GLi~~~r 288 (497)
...|+|+|||.||+..|-.|.. .|+ ++.++|+. .+...+|
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~~~~~~~~~r 43 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERAPRELLERGR 43 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccCccccccCce
Confidence 4579999999999999888865 474 57788886 4444444
No 346
>PRK06753 hypothetical protein; Provisional
Probab=57.44 E-value=13 Score=38.16 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.9
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010939 239 RFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~ 258 (497)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999988865
No 347
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.31 E-value=5.9 Score=46.46 Aligned_cols=130 Identities=23% Similarity=0.354 Sum_probs=79.3
Q ss_pred HHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 010939 201 KYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 280 (497)
Q Consensus 201 ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~ 280 (497)
||..++.||.++-| ++|.++|+.++|||+.||-.-+-+... |+.--+ .+.|.+.|-
T Consensus 412 RYD~qiavfG~~fq------------------eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~-~g~ItVTDm 467 (1013)
T KOG2012|consen 412 RYDGQIAVFGAKFQ------------------EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGN-SGKITVTDM 467 (1013)
T ss_pred ccccchhhhchHHH------------------HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCC-CCceEEecc
Confidence 66667777765544 679999999999999998766655432 553211 135666665
Q ss_pred CCcccCCCccCCchhchhhh-ccc----CCCCCHHHHHhccCCcEEEE-------ccCCCCCCCHHHHHHHHccCCCceE
Q 010939 281 KGLIVSSRLESLQHFKKPWA-HEH----EPVKELVDAVNAIKPTILIG-------TSGQGRTFTKEVVEAMASLNEKPII 348 (497)
Q Consensus 281 ~GLi~~~r~~~l~~~k~~~a-~~~----~~~~~L~e~v~~vkptvLIG-------~S~~~g~Fteevi~~Ma~~~~rPII 348 (497)
+ .|.++ +|+ +.|- |+. +....-.+|+...+|++.|= --+- ++|+.+--+..- =++
T Consensus 468 D-~IEkS---NLn---RQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE-~If~D~Ff~~ld-----~Va 534 (1013)
T KOG2012|consen 468 D-HIEKS---NLN---RQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETE-HIFNDEFFENLD-----GVA 534 (1013)
T ss_pred c-hhhhc---ccc---ceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccc-cccchhHHhhhH-----HHH
Confidence 5 33332 243 2232 221 11234678899999999873 2332 578777666542 233
Q ss_pred EecCCCCCCCCCCHHHHhccccCcEEEe
Q 010939 349 FSLSNPTSQSECTAEEAYTWSQGRAIFA 376 (497)
Q Consensus 349 FaLSNPt~~~E~~peda~~~t~Grai~A 376 (497)
=||=|= ||-.|-|+||+|=
T Consensus 535 nALDNV---------dAR~YvD~RCv~~ 553 (1013)
T KOG2012|consen 535 NALDNV---------DARRYVDRRCVYY 553 (1013)
T ss_pred Hhhcch---------hhhhhhhhhhhhh
Confidence 355554 5778888999873
No 348
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=57.25 E-value=13 Score=39.77 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
-.++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 4699999999999999887653 6 5799999874
No 349
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=57.24 E-value=9 Score=40.82 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=26.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..+..||||+|+|.||+..|+.|. + . .-+|.++|++
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCC
Confidence 456679999999999998876652 1 1 2368999875
No 350
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=57.23 E-value=50 Score=30.77 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=19.5
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMAS 341 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~ 341 (497)
+-|++|++|..| -|+++++.+..
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~~ 123 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALEA 123 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHH
Confidence 479999999987 79999998863
No 351
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=57.16 E-value=10 Score=39.40 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=27.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
.+|||+|+|.||+..|+.|... + ..-+|.+++++.-
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCCC
Confidence 4899999999999999988542 2 1247888887643
No 352
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=57.02 E-value=9.2 Score=32.64 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=51.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc-CCCCCHHHHHhccCC
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIKP 318 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~~~~L~e~v~~vkp 318 (497)
|||+|.|..|..+++.|.+. + .++.++|++--.. +.+.+...++-..+ .....|.+ ..--++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d~~~~----~~~~~~~~~~i~gd~~~~~~l~~-a~i~~a 63 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRDPERV----EELREEGVEVIYGDATDPEVLER-AGIEKA 63 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESSHHHH----HHHHHTTSEEEES-TTSHHHHHH-TTGGCE
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECCcHHH----HHHHhcccccccccchhhhHHhh-cCcccc
Confidence 78999999999999988652 2 5799999862111 11111111111111 11123433 344568
Q ss_pred cEEEEccCCCCCCCHHHHHHHHccCC-CceEEecCCCC
Q 010939 319 TILIGTSGQGRTFTKEVVEAMASLNE-KPIIFSLSNPT 355 (497)
Q Consensus 319 tvLIG~S~~~g~Fteevi~~Ma~~~~-rPIIFaLSNPt 355 (497)
+.+|-++... .-+-.++....+.++ -+||.-+.||.
T Consensus 64 ~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 64 DAVVILTDDD-EENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp SEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred CEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 8888776532 233344444444355 45665555565
No 353
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=56.96 E-value=37 Score=35.53 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=57.6
Q ss_pred CCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh--chhhhc-ccCCCCCHHH
Q 010939 236 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAH-EHEPVKELVD 311 (497)
Q Consensus 236 ~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~--k~~~a~-~~~~~~~L~e 311 (497)
+++||+|.|+ |-.|..+++.|.+ .| -+++.+|+..- ..+... ...+-. +-....++.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4679999998 9999999888865 25 36888887531 011110 011111 1111234555
Q ss_pred HHhccCCcEEEEccCCCC---C--------------CCHHHHHHHHccCCCceEEecC
Q 010939 312 AVNAIKPTILIGTSGQGR---T--------------FTKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 312 ~v~~vkptvLIG~S~~~g---~--------------Fteevi~~Ma~~~~rPIIFaLS 352 (497)
+++ ++|++|=+.+..+ . .+..+++.+.++.-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 555 4899998775421 1 2345777777666678888654
No 354
>PRK12829 short chain dehydrogenase; Provisional
Probab=56.86 E-value=40 Score=32.31 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=23.3
Q ss_pred CCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+++.+++|.||. ..|..++++|. + .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~----~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFA----E-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 3788999999983 44444444443 3 363 58888864
No 355
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=56.76 E-value=14 Score=39.76 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=27.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
...+|+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 45799999999999999887754 35 468889876
No 356
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.73 E-value=15 Score=40.05 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
.+...||+|+|+|-+|+++|+.|..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~ 36 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE 36 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH
Confidence 3567899999999999999999875
No 357
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=56.62 E-value=54 Score=34.93 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-cCCCCCHHH
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVD 311 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~~~~L~e 311 (497)
..|++.+|.|+|-|+-|.++|+.|... |+ ++++.|+.+ +. . ..+.. .-...++.|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~-----~~A~~~G~~v~sl~E 67 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----F-----EVAKADGFEVMSVSE 67 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----h-----HHHHHcCCEECCHHH
Confidence 358899999999999999999998764 75 466666532 11 1 11111 111247999
Q ss_pred HHhccCCcEEE
Q 010939 312 AVNAIKPTILI 322 (497)
Q Consensus 312 ~v~~vkptvLI 322 (497)
+++. +|+++
T Consensus 68 aak~--ADVV~ 76 (335)
T PRK13403 68 AVRT--AQVVQ 76 (335)
T ss_pred HHhc--CCEEE
Confidence 9988 88877
No 358
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=56.41 E-value=14 Score=37.83 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=27.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 284 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi 284 (497)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+....
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~~ 35 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDLP 35 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCCC
Confidence 58999999999999988764 36 368889987543
No 359
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=56.37 E-value=14 Score=35.83 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+.-.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999987753 364 6888888743
No 360
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=56.26 E-value=22 Score=39.61 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=25.7
Q ss_pred HHHHHhCCCCCCceEEEeCcChHHHHHHHHHHH
Q 010939 226 SAMKFLGGSLADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 226 ~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
.++.-...-|...|+.++|-..-.+|+++.|.+
T Consensus 352 dam~d~~~~l~GKrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 352 DAMTDSHAWLHGKRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred HHHHHHHHHhcCceEEEECCHHHHHHHHHHHHH
Confidence 333333445788999999999999999999975
No 361
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=56.24 E-value=42 Score=33.79 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
||.|+|+|.-|.++|..|... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 63 57888875
No 362
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=56.23 E-value=71 Score=33.84 Aligned_cols=107 Identities=13% Similarity=0.200 Sum_probs=70.9
Q ss_pred CCCCceec-CccchhHHHHHHHHHHHHHhC-CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 204 TTHLVFND-DIQGTASVVLAGLISAMKFLG-GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 204 ~~~~~FnD-DiQGTa~V~lAgll~Al~~~g-~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.++||+|- |-..=-+=+||=++.-.+..| +++++.+|.++|-+.- ++++-++.++.+ -|+ ++.++-.+
T Consensus 121 ~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~ 190 (336)
T PRK03515 121 AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--NMGNSLLEAAAL-TGL-------DLRLVAPK 190 (336)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--cHHHHHHHHHHH-cCC-------EEEEECCc
Confidence 47999993 223334567888887777766 4799999999998733 477877777665 474 68888887
Q ss_pred CcccCCCccCCchhchhhhcccC----CCCCHHHHHhccCCcEEEEcc
Q 010939 282 GLIVSSRLESLQHFKKPWAHEHE----PVKELVDAVNAIKPTILIGTS 325 (497)
Q Consensus 282 GLi~~~r~~~l~~~k~~~a~~~~----~~~~L~e~v~~vkptvLIG~S 325 (497)
|+.-.. + +-+.-+.+++... ...++.|++++ +||+.-.+
T Consensus 191 ~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~ 233 (336)
T PRK03515 191 ACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDV 233 (336)
T ss_pred hhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecC
Confidence 773321 1 1111123343221 13789999998 99999865
No 363
>PRK12828 short chain dehydrogenase; Provisional
Probab=56.16 E-value=23 Score=33.17 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++++.+++|.|| |..|..+++.+.+ +|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 467789999997 5555556655543 363 58888885
No 364
>PRK07045 putative monooxygenase; Reviewed
Probab=56.15 E-value=14 Score=38.27 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.5
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~ 258 (497)
.+|+|+|||.||+..|..|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 365
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=55.46 E-value=17 Score=41.86 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=29.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
-.+.||+|+|||.||+..|..|.. .| .++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~-----~G-------~~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAK-----RG-------YDVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEecC
Confidence 457799999999999999998865 36 468899974
No 366
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=55.46 E-value=15 Score=38.67 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=28.6
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccc
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 285 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~ 285 (497)
+-.|+|+|||.||...|..+.+. |+ ++.++|++..+-
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G 39 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPG 39 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCC
Confidence 34689999999999999998764 64 577788765543
No 367
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=55.43 E-value=41 Score=32.35 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=25.3
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++++.+++|.|| |..|..+|+.+.+ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 578899999997 5666666666643 363 57777764
No 368
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=55.43 E-value=1.1e+02 Score=37.85 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 010939 195 AFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 274 (497)
Q Consensus 195 af~iL~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~ 274 (497)
-+++..+|.-.+|+.+=|-+|.+.-. .. | +-+++.+++.+.++.|++. ++
T Consensus 456 ~~~l~~~yga~vV~m~~de~G~p~t~-e~---------------r----------~~i~~~~~~~~~~~~Gi~~----ed 505 (1178)
T TIGR02082 456 TAKLIKEYGAAVVVMAFDEEGQARTA-DR---------------K----------IEICKRAYNILTEKVGFPP----ED 505 (1178)
T ss_pred HHHHHHHhCCCEEEEecCCCCCCCCH-HH---------------H----------HHHHHHHHHHHHHHcCCCH----HH
Confidence 55666677666666666656644321 00 1 3388999888776579974 55
Q ss_pred EEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhcc-----CCcEEEEccCCCCCCC-----HHHHHH----HH
Q 010939 275 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI-----KPTILIGTSGQGRTFT-----KEVVEA----MA 340 (497)
Q Consensus 275 i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v-----kptvLIG~S~~~g~Ft-----eevi~~----Ma 340 (497)
|+ +|.- +.+-+-. .+ .+..++. . -.|+++.+ ..-+++|+|...=-|. ++++.. ||
T Consensus 506 Ii-~DP~-i~~v~~g--~~-e~n~~~~-----~-~le~i~~ik~~~pg~~~~~GlSN~SFglp~~~~~R~~ln~~FL~~a 574 (1178)
T TIGR02082 506 II-FDPN-ILTIATG--IE-EHRRYAI-----N-FIEAIRWIKEELPDAKISGGVSNVSFSFRGNPAAREAMHSVFLYHA 574 (1178)
T ss_pred EE-EeCC-ccccccC--ch-HHHHHHH-----H-HHHHHHHHHHhCCCCceEEEecccccCCCCCchHHHHHHHHHHHHH
Confidence 65 7763 3222211 11 2222222 1 33556665 4679999998753342 444332 22
Q ss_pred ccCCCceEEecCCCCCC
Q 010939 341 SLNEKPIIFSLSNPTSQ 357 (497)
Q Consensus 341 ~~~~rPIIFaLSNPt~~ 357 (497)
-+.=.=+|+.||...
T Consensus 575 --~~~Gld~aIvnp~~~ 589 (1178)
T TIGR02082 575 --IRAGMDMGIVNAGKI 589 (1178)
T ss_pred --HHcCCchhhcChhhh
Confidence 133344567788753
No 369
>PRK12831 putative oxidoreductase; Provisional
Probab=55.38 E-value=16 Score=39.80 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=28.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
...+|+|+|+|.||+..|..|... | .++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 567999999999999999888753 6 368888864
No 370
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=55.37 E-value=20 Score=38.80 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=37.0
Q ss_pred HHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 010939 200 EKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLV 278 (497)
Q Consensus 200 ~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~v 278 (497)
++|......+.|=..||+ .++++++++|.|| |.-|..+|+.+. + .| -++..+
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~La----~-~G-------~~Vi~l 208 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKELH----Q-QG-------AKVVAL 208 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHHH----H-CC-------CEEEEE
Confidence 356667788999888988 2467789999997 444444555443 3 36 357777
Q ss_pred ccC
Q 010939 279 DSK 281 (497)
Q Consensus 279 D~~ 281 (497)
|++
T Consensus 209 ~r~ 211 (406)
T PRK07424 209 TSN 211 (406)
T ss_pred eCC
Confidence 764
No 371
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=55.36 E-value=14 Score=37.06 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=29.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 284 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi 284 (497)
.+-.++|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999987754 35 468889987543
No 372
>PRK06841 short chain dehydrogenase; Provisional
Probab=55.28 E-value=27 Score=33.50 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=24.7
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++++.+++|.|| |..|..+|+.+.+ .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~-----~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAA-----KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 477889999997 5555556665543 363 57888775
No 373
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=55.28 E-value=14 Score=38.13 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
..|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~~ 38 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPRA 38 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 479999999999999977754 363 688888763
No 374
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.17 E-value=20 Score=39.44 Aligned_cols=103 Identities=21% Similarity=0.317 Sum_probs=63.7
Q ss_pred CCCcccccchhhHHHHhhhcCCCCCceeeEEe-ccCCCccccccCcccccccccCcchhhhHHHHHHHHHHHHHhhCCCc
Q 010939 105 LGCHGMGIPVGKLSLYTALGGIRPSACLPVTI-DVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI 183 (497)
Q Consensus 105 lG~~gm~I~~GKl~Ly~a~gGi~P~~~lPi~L-Dvgtnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~ 183 (497)
.||-|- ||+++-.|.|+-=--...-+.| .|+. | +|.=.-+..+= ++.
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~-n--------------------------~dLr~LL~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKL-D--------------------------SDLRHLLLATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccC-c--------------------------HHHHHHHHhCC-CCc
Confidence 455443 7999999999865233555556 5663 3 23222233333 778
Q ss_pred ceeeecCCCCcHHHHHHHHcCCCCceecCccchhHHHHHHHHHHHHHhCCCCCCceEEEeC
Q 010939 184 LIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLG 244 (497)
Q Consensus 184 lI~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTa~V~lAgll~Al~~~g~~l~d~riv~~G 244 (497)
+|-+|||... +.+=+|-.++-.-+++ .-.-|||.||||++--.-..=.+.||+||=
T Consensus 289 IivIEDIDcs--~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 289 ILLIEDIDCS--FDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred EEEEeecccc--cccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEe
Confidence 8999999754 4433443333333333 466799999999987555555567777764
No 375
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=55.13 E-value=48 Score=31.61 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=87.8
Q ss_pred hhcCCCcceecccCchhHHHHHhhCCCCCceEEEEecC--ceeeccCCCCCc--ccccchhhHHHHhhhcCCCCCceeeE
Q 010939 59 IYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDG--ERILGLGDLGCH--GMGIPVGKLSLYTALGGIRPSACLPV 134 (497)
Q Consensus 59 i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG--~rILGLGDlG~~--gm~I~~GKl~Ly~a~gGi~P~~~lPi 134 (497)
+-+++.|+-++..|.....+.++.+...++.|+.+-.. ..-..+--.|.+ .+|-..|+.++-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 46679999999999988888998888889988887555 222222233443 57777777777766654 444
Q ss_pred EeccCCCccccccCcccccccccCcchhhhHHHHHHHHHHHHHhhCCCccee---eecCCCCcHHHHHHHHcCCCCceec
Q 010939 135 TIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQ---FEDFANHNAFDLLEKYGTTHLVFND 211 (497)
Q Consensus 135 ~LDvgtnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~fGp~~lI~---~EDf~~~~af~iL~ryr~~~~~FnD 211 (497)
++=.|.. ......+.++-|.+++++ ++.-.++. ..+.....+.+..+++-...+ -|
T Consensus 126 ~~~~~~~------------------~~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~ 184 (257)
T PF13407_consen 126 LILSGSP------------------GNPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VD 184 (257)
T ss_dssp EEEESST------------------TSHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EE
T ss_pred EeccCCC------------------CchHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ce
Confidence 5434421 122333456777777777 63212222 235666677765555433222 11
Q ss_pred CccchhHHHHHHHHHHHHHhCC
Q 010939 212 DIQGTASVVLAGLISAMKFLGG 233 (497)
Q Consensus 212 DiQGTa~V~lAgll~Al~~~g~ 233 (497)
=|=.+....+-|++.|++-.|+
T Consensus 185 ~i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 185 AIIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC
T ss_pred EEEeCCChHHHHHHHHHHHcCC
Confidence 2222233444477888888887
No 376
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=55.04 E-value=13 Score=42.19 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC-cccCCCccCCch
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG-LIVSSRLESLQH 294 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G-Li~~~r~~~l~~ 294 (497)
++..|+|+|||.||+..|-.|... .|+ ++.++|++- ....+|...+++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~~~~~~~grA~gl~p 79 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERKPGRLELGQADGIAC 79 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcCCCCCCCCeeeEECh
Confidence 356899999999999999888651 265 477888773 334445433443
No 377
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.92 E-value=16 Score=37.22 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=25.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.||.|+|||.-|.|||..++.+ |. +++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 3899999999999999988753 63 57777754
No 378
>PLN02852 ferredoxin-NADP+ reductase
Probab=54.69 E-value=12 Score=41.44 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=31.7
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 230 FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 230 ~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
....+-...||+|+|||.||+..|..|.... .| -++.++|+.
T Consensus 19 ~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 19 SSSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 3344455679999999999999999987531 24 478899886
No 379
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=54.67 E-value=19 Score=37.58 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=29.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 455799999999999999888752 253 47999998643
No 380
>PRK05993 short chain dehydrogenase; Provisional
Probab=54.62 E-value=31 Score=33.96 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=21.4
Q ss_pred CceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..+++|.|| |..|..+|+.+.+ .| -++++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~-----~G-------~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQS-----DG-------WRVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH-----CC-------CEEEEEECC
Confidence 357899998 5555555555543 36 368888775
No 381
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=54.57 E-value=16 Score=41.68 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..||+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G-------~~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KG-------HDVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 45799999999999999988865 25 358888865
No 382
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=54.52 E-value=20 Score=38.27 Aligned_cols=86 Identities=10% Similarity=0.155 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc--
Q 010939 225 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-- 302 (497)
Q Consensus 225 l~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~-- 302 (497)
..++.-....|.+.|++++|.+.-..++++++.+ .|+. +..+-.. .... ++....+..+...
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3444444456788999999988888999987754 4873 2222111 1111 1111111111000
Q ss_pred ---cCCCCCHHHHHhccCCcEEEEccC
Q 010939 303 ---HEPVKELVDAVNAIKPTILIGTSG 326 (497)
Q Consensus 303 ---~~~~~~L~e~v~~vkptvLIG~S~ 326 (497)
......+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 111124668888899999999654
No 383
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=54.35 E-value=16 Score=41.46 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=27.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
..|+|+|||.+|+.+|-.|.+ .| .++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G-------~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RG-------WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CC-------CeEEEEecCC
Confidence 489999999999999999865 36 3699999874
No 384
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=54.31 E-value=54 Score=32.21 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=51.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhc----hhhhc-ccCCCCCHHHH
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWAH-EHEPVKELVDA 312 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k----~~~a~-~~~~~~~L~e~ 312 (497)
||+|.|| |..|..+++.|.+ +| .+++++|+. .+.....+.... ..+.+ +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788875 7777777777654 35 356777642 111111111100 01111 11223467778
Q ss_pred HhccCCcEEEEccCCCCCC----------------CHHHHHHHHccCCCceEEe
Q 010939 313 VNAIKPTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFS 350 (497)
Q Consensus 313 v~~vkptvLIG~S~~~g~F----------------teevi~~Ma~~~~rPIIFa 350 (497)
++..++|++|=+.+..... +..+++.|.++.-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8777899998655432111 2356677776655677773
No 385
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=53.99 E-value=1.2e+02 Score=29.86 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=30.0
Q ss_pred CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010939 307 KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 349 (497)
Q Consensus 307 ~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIF 349 (497)
.++.+.++. .|++|..|... -|.-.++++|+ +..|+|.
T Consensus 254 ~~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 254 DDIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred ccHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 457777777 89999888765 47888999998 5778885
No 386
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=53.97 E-value=20 Score=36.28 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=30.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
+..||+++|+|.-|.-+++.|+.+-....++... .--+|.++|.+=
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~-~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP-GGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC-CCCEEEEECCCE
Confidence 4679999999999999999998751000011100 002899999873
No 387
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=53.91 E-value=94 Score=28.59 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=24.3
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc--cCCCceEEecCCCC
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMAS--LNEKPIIFSLSNPT 355 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~--~~~rPIIFaLSNPt 355 (497)
+-|++|++|..| -|+++++.+.. ...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999987 78888887653 33345444333343
No 388
>PLN02676 polyamine oxidase
Probab=53.79 E-value=35 Score=37.46 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=27.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
...+++|+|||.+|+..|..|.+. |. +++.+++++.-
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-----g~------~~v~vlE~~~~ 61 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-----GI------EDILILEATDR 61 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-----CC------CcEEEecCCCC
Confidence 355899999999999999998753 64 34666666543
No 389
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=53.73 E-value=17 Score=37.81 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=26.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 3579999999999999977754 375 57788865
No 390
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=53.59 E-value=17 Score=43.36 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC----CcccC
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK----GLIVS 286 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~----GLi~~ 286 (497)
-++.||+|+|+|.||+..|..|.. .|. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar-----~G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV-----EGF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeeCCCCCceEEc
Confidence 457899999999999999999875 363 68889886 66543
No 391
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=53.57 E-value=80 Score=34.89 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=29.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+.++||+++|-|-.|+++|+.|.+ .| .++++.|.+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~-----~G-------~~v~v~D~~ 39 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLK-----LG-------AEVTVSDDR 39 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHH-----CC-------CeEEEEcCC
Confidence 3458899999999999999999976 36 468888865
No 392
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=53.57 E-value=53 Score=33.00 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=25.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.||.|+|.|.-|..+|..+.. .| .+++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g-------~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AG-------YSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CC-------CeEEEEcCC
Confidence 479999999999999999865 35 357777765
No 393
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=53.55 E-value=16 Score=43.97 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=28.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
-+..||+|+|||.||+..|..|.. .| .++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-----~G-------~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-----AG-------HPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEecc
Confidence 457899999999999999999865 36 368888875
No 394
>PRK08013 oxidoreductase; Provisional
Probab=53.54 E-value=17 Score=38.22 Aligned_cols=33 Identities=12% Similarity=0.309 Sum_probs=26.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 4579999999999999977754 475 57788875
No 395
>PRK14694 putative mercuric reductase; Provisional
Probab=53.50 E-value=18 Score=39.09 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=27.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888763 5 579999975
No 396
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=53.43 E-value=54 Score=31.39 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=24.1
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.++..+++|.|| |..|..+++.|.+ +|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 366778999998 5556666666543 363 57777764
No 397
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=53.42 E-value=21 Score=36.88 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..++|+|+|+|.||+..|..|.+ .| .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 45799999999999999888864 35 478899986
No 398
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=53.31 E-value=16 Score=39.18 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.5
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+||+|||+||+..|..+.+ .| .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999988865 36 579999986
No 399
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=53.23 E-value=34 Score=39.19 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=27.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.||.|+|+|.-|..+|..+... |. ..+++.+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC
Confidence 6899999999999999988653 53 2468888874
No 400
>PRK07588 hypothetical protein; Provisional
Probab=53.17 E-value=16 Score=37.86 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.2
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~ 258 (497)
.+|+|+|+|.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988764
No 401
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=53.16 E-value=63 Score=31.64 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=44.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh----chhhhc-ccCCCCCHHHH
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF----KKPWAH-EHEPVKELVDA 312 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~----k~~~a~-~~~~~~~L~e~ 312 (497)
||+|.|| |..|-.+++.|+.. |- .-+++.+|+... ..+.+.+... ...+-. +-....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5888887 88888888877653 31 136777775311 0011111111 111111 11223468888
Q ss_pred HhccCCcEEEEccCCC
Q 010939 313 VNAIKPTILIGTSGQG 328 (497)
Q Consensus 313 v~~vkptvLIG~S~~~ 328 (497)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 402
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=53.11 E-value=17 Score=39.12 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=27.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34799999999999999888653 6 579999985
No 403
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=53.03 E-value=14 Score=37.94 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=17.4
Q ss_pred EEEeCcChHHHHHHHHHHH
Q 010939 240 FLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~ 258 (497)
|+|+|||.||+..|..|.+
T Consensus 2 v~IvGaG~aGl~~A~~L~~ 20 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSR 20 (382)
T ss_pred EEEECccHHHHHHHHHHhc
Confidence 7999999999999998875
No 404
>PRK10262 thioredoxin reductase; Provisional
Probab=52.98 E-value=16 Score=36.92 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.6
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 010939 235 LADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
-+..+|+|+|+|.||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999988865
No 405
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=52.92 E-value=17 Score=39.31 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=54.8
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc---------
Q 010939 232 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--------- 302 (497)
Q Consensus 232 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~--------- 302 (497)
...|+..|++++|-..-.+++++.|.+ .|+.. .. +++....+...+.-+.+.+.
T Consensus 298 ~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v------~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 360 (435)
T cd01974 298 HQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEP------VH------VLTGNGGKRFEKEMQALLDASPYGAGAKV 360 (435)
T ss_pred HHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEE------EE------EEeCCCCHHHHHHHHHHHhhcCCCCCcEE
Confidence 345788999999988899999999975 38732 11 11211111111111111111
Q ss_pred --cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCC
Q 010939 303 --HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 355 (497)
Q Consensus 303 --~~~~~~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt 355 (497)
......+++.++..+||++||-|.. +.+|+...-|.| ..+.|.
T Consensus 361 ~~~~d~~e~~~~i~~~~pDliiG~s~~---------~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 361 YPGKDLWHLRSLLFTEPVDLLIGNTYG---------KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred EECCCHHHHHHHHhhcCCCEEEECccH---------HHHHHHhCCCEE-EeeCCc
Confidence 1222357888889999999996642 334433355653 455554
No 406
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=52.86 E-value=2.7e+02 Score=28.97 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHHHcCCCCceec--CccchhHHHHHHHHHHHHHhCCCCCCceEEEeCc
Q 010939 168 LHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND--DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 245 (497)
Q Consensus 168 vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~ryr~~~~~FnD--DiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GA 245 (497)
+.+.+..+. +| .++++ +-.+.... .+-+.+| .++||.|- +..-=-+=+||=++.-.+..| ++++.||+++|-
T Consensus 85 i~Dta~vls-~y-~D~iv-iR~~~~~~-~~~~a~~-s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD 158 (301)
T TIGR00670 85 LADTIKTLS-GY-SDAIV-IRHPLEGA-ARLAAEV-SEVPVINAGDGSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGD 158 (301)
T ss_pred HHHHHHHHH-Hh-CCEEE-EECCchhH-HHHHHhh-CCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEcc
Confidence 455554444 45 33333 44444332 2233343 48999995 232233456777776656665 699999999998
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc-C---CCCCHHHHHhccCCcEE
Q 010939 246 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-E---PVKELVDAVNAIKPTIL 321 (497)
Q Consensus 246 GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~---~~~~L~e~v~~vkptvL 321 (497)
|.= .-+++-++.++.+ .|+ ++.++-.+|+- +++.....+++. . ...++.|++++ +||+
T Consensus 159 ~~~-~~v~~Sl~~~~a~-~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~G~~v~~~~d~~~a~~~--aDvv 220 (301)
T TIGR00670 159 LKY-GRTVHSLAEALTR-FGV-------EVYLISPEELR-------MPKEILEELKAKGIKVRETESLEEVIDE--ADVL 220 (301)
T ss_pred CCC-CcHHHHHHHHHHH-cCC-------EEEEECCcccc-------CCHHHHHHHHHcCCEEEEECCHHHHhCC--CCEE
Confidence 631 1455666665554 475 57777777661 222222333321 1 13789999998 9999
Q ss_pred EEccCC
Q 010939 322 IGTSGQ 327 (497)
Q Consensus 322 IG~S~~ 327 (497)
.-.+-+
T Consensus 221 yt~~~~ 226 (301)
T TIGR00670 221 YVTRIQ 226 (301)
T ss_pred EECCcc
Confidence 988754
No 407
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=52.83 E-value=31 Score=29.41 Aligned_cols=89 Identities=12% Similarity=0.202 Sum_probs=50.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccCC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 318 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vkp 318 (497)
||.|+|+|..|.....-+... ..+. +=..++|++. +......+.|-- +..+|+.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 899999999977765554432 0121 2234555541 111111122211 245889999998889
Q ss_pred cEEEEccCCCCCCCHHHHHHHHccCCCceE
Q 010939 319 TILIGTSGQGRTFTKEVVEAMASLNEKPII 348 (497)
Q Consensus 319 tvLIG~S~~~g~Fteevi~~Ma~~~~rPII 348 (497)
|+++ +++.. ..-.++++...+... +|+
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~ 90 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVL 90 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEE
Confidence 9888 55554 355666666554433 444
No 408
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=52.77 E-value=16 Score=39.66 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=27.5
Q ss_pred CCCCCc--eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 233 GSLADQ--RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 233 ~~l~d~--riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+++++. .|+|+|||.||...|..|.. .|+ ++.++|++
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~-----~G~-------~VlllEr~ 71 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAK-----GGI-------ETFLIERK 71 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 445544 68999999999999988764 374 46677765
No 409
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=52.68 E-value=53 Score=35.02 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHH
Q 010939 224 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 224 ll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
+..++.-....|+..|++++|-+.-..++++.|.+
T Consensus 263 ~~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 263 AWRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred HHHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH
Confidence 34455555566788899999999989999999987
No 410
>PRK08244 hypothetical protein; Provisional
Probab=52.68 E-value=17 Score=39.43 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=25.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~-----~G~-------~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL-----AGV-------KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 569999999999999988865 375 46677764
No 411
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=52.62 E-value=56 Score=32.89 Aligned_cols=86 Identities=12% Similarity=0.283 Sum_probs=51.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhccC
Q 010939 239 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 317 (497)
Q Consensus 239 riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~vk 317 (497)
||+|.|| |--|-.+++.|.+ .| +++.+|+..-. +.-+-.....+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999888887753 13 36666764210 0001111235777888888
Q ss_pred CcEEEEccCCCCCC----------------CHHHHHHHHccCCCceEEecC
Q 010939 318 PTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 318 ptvLIG~S~~~g~F----------------teevi~~Ma~~~~rPIIFaLS 352 (497)
||++|=+.+..+.- +..+++.+.++. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776553221 233555555554 46887544
No 412
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=52.53 E-value=18 Score=37.75 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=25.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+|+|+|||-+|+.+|..|.. .| .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 69999999999999988864 25 468899986
No 413
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=52.51 E-value=1.3e+02 Score=31.17 Aligned_cols=112 Identities=20% Similarity=0.307 Sum_probs=71.8
Q ss_pred HHHHHHHcCCCCceecC-ccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 010939 196 FDLLEKYGTTHLVFNDD-IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 274 (497)
Q Consensus 196 f~iL~ryr~~~~~FnDD-iQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~ 274 (497)
.+.+.+| .++|++|-+ -..=-+=+|+=++.-.+..|. |++.||+++|..+ .+++-++.++.+ .|+ +
T Consensus 108 ~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~-------~ 174 (304)
T TIGR00658 108 VEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFGK-LKGVKVVYVGDGN---NVCNSLMLAGAK-LGM-------D 174 (304)
T ss_pred HHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCC-CCCcEEEEEeCCC---chHHHHHHHHHH-cCC-------E
Confidence 3334443 479999942 222235677777776666664 9999999999873 488888887766 464 6
Q ss_pred EEEEccCCcccCCCccCCchhchhhhccc----CCCCCHHHHHhccCCcEEEEcc
Q 010939 275 IWLVDSKGLIVSSRLESLQHFKKPWAHEH----EPVKELVDAVNAIKPTILIGTS 325 (497)
Q Consensus 275 i~~vD~~GLi~~~r~~~l~~~k~~~a~~~----~~~~~L~e~v~~vkptvLIG~S 325 (497)
+.++-.+++.-.. .+.+.-+.+++.. ....++.|++++ .||+.-.+
T Consensus 175 v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 175 VVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred EEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 8888887763321 1111222333321 123689999998 99998764
No 414
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=52.48 E-value=19 Score=38.53 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=26.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999887652 5 578999984
No 415
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=52.45 E-value=1.7e+02 Score=33.91 Aligned_cols=104 Identities=14% Similarity=0.049 Sum_probs=55.9
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCC--------CCCCHHHHhccccCcEEEecCCCCCccc
Q 010939 314 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ--------SECTAEEAYTWSQGRAIFASGSPFDPFE 385 (497)
Q Consensus 314 ~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~--------~E~~peda~~~t~Grai~AsGsPf~pv~ 385 (497)
+..+|+++|..++.+ +.-.-+.....+-+|=|.+=.-||... .+-|-+++..+... ..-..| ..||.
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~-~~~~~g--k~pv~ 487 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA-LAKKQG--KTPIV 487 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH-HHHHcC--CceEE
Confidence 456899999887764 554444444445556688889998742 22333333332110 000122 33444
Q ss_pred cCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHH
Q 010939 386 YGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 426 (497)
Q Consensus 386 ~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA 426 (497)
. .+.||.+=|-+.+|-+--++.+..-- ++.+-+-.|.
T Consensus 488 v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a~ 524 (708)
T PRK11154 488 V---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAAL 524 (708)
T ss_pred E---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 3 25677777777777666555554432 3444444443
No 416
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=52.44 E-value=21 Score=31.86 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=25.7
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999999888653 5 5688888876
No 417
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=52.29 E-value=18 Score=38.58 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4799999999999999988653 5 579999975
No 418
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=52.19 E-value=17 Score=39.14 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=26.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 89999999999999988865 36 579999985
No 419
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=52.16 E-value=17 Score=40.60 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=0.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.||+|+|||.+|+..++.|.+. |+ ++.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-----g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-----GL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-----T--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------CCeEEecC
No 420
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=52.09 E-value=56 Score=37.93 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=59.1
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEEecCCCCCC--------CCCCHHHHhccccCcEEEecCCCCCccc
Q 010939 314 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ--------SECTAEEAYTWSQGRAIFASGSPFDPFE 385 (497)
Q Consensus 314 ~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~--------~E~~peda~~~t~Grai~AsGsPf~pv~ 385 (497)
+..+|+++|..++.. +.-.-+..-.++-+|=|.+=.-||... .+-|.+++++..- =|+..-=..||.
T Consensus 416 ~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~---~~~~~lgk~pv~ 490 (714)
T TIGR02437 416 QHVREDAILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVV---AYASKMGKTPIV 490 (714)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHH---HHHHHcCCEEEE
Confidence 456899999988864 544333333333444488889999742 3344444443211 011111134444
Q ss_pred cCCeeeCCCCccccccchhhhHHHHHcCCcccCHHHHHHHH
Q 010939 386 YGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 426 (497)
Q Consensus 386 ~~G~~~~p~Q~NN~~iFPGiglG~i~~~a~~itd~m~~aAA 426 (497)
.+ +.||-.=|-..+|-+-=+..+...- ++.+-+-+|.
T Consensus 491 v~---d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~ 527 (714)
T TIGR02437 491 VN---DCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVM 527 (714)
T ss_pred eC---CcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 42 6788888888888776665555433 5666666553
No 421
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=51.46 E-value=19 Score=37.54 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887530 14 579999986
No 422
>PRK06185 hypothetical protein; Provisional
Probab=51.42 E-value=18 Score=37.70 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=26.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4579999999999999877754 474 578888764
No 423
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=51.37 E-value=17 Score=37.67 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=26.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCCC
Confidence 4579999999999999977754 364 688888763
No 424
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=51.36 E-value=15 Score=38.38 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCCC
Confidence 369999999999999988754 364 678888763
No 425
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=51.36 E-value=18 Score=39.86 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=27.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
-.|||+|+|.+|+++|..+.. .|+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 469999999999999988865 375 588898863
No 426
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=51.09 E-value=18 Score=37.02 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=25.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G-------~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RG-------LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCCC
Confidence 48999999999999988865 26 4688898763
No 427
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=50.96 E-value=17 Score=37.72 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=27.0
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999987754 474 588899864
No 428
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=50.91 E-value=26 Score=37.92 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=55.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchh---chhhhc-ccCCCCCHHHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF---KKPWAH-EHEPVKELVDAV 313 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~---k~~~a~-~~~~~~~L~e~v 313 (497)
.+||++|||-.|-.+|..|.+- |- .+|++.||. .+..+.+... +..... +....+.|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998762 42 689988885 1111111111 122221 223446899999
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHc
Q 010939 314 NAIKPTILIGTSGQGRTFTKEVVEAMAS 341 (497)
Q Consensus 314 ~~vkptvLIG~S~~~g~Fteevi~~Ma~ 341 (497)
++ .|+.|-+-.+ -++..++++-.+
T Consensus 67 ~~--~d~VIn~~p~--~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAPP--FVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCCc--hhhHHHHHHHHH
Confidence 98 6998876554 588888877664
No 429
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=50.88 E-value=19 Score=38.43 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=25.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.++|+|+|.||+..|..+... | .++.++|+.
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~~ 33 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEKE 33 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 589999999999999888652 6 579999983
No 430
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=50.86 E-value=23 Score=35.76 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=25.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=-
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~ 51 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLS 51 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCC
Confidence 345789999999999999888764 64 6888888733
No 431
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=50.62 E-value=18 Score=43.58 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=27.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..+|+|+|||.||+..|..|.. .| -++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G-------~~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AG-------HPVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEecc
Confidence 35799999999999999998865 36 368888875
No 432
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=50.57 E-value=56 Score=30.86 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=25.1
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+.+.+++|.|| |..|..+++.+.+ +| -++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~-----~g-------~~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAA-----DG-------AEVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 356779999996 5666667766654 36 368888775
No 433
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=50.54 E-value=20 Score=37.58 Aligned_cols=33 Identities=15% Similarity=0.422 Sum_probs=26.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 4579999999999999977654 475 57888875
No 434
>PRK06138 short chain dehydrogenase; Provisional
Probab=50.40 E-value=33 Score=32.60 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=23.2
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+|++.+++|.|| |.-|..+|+.+. + .| -++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~----~-~G-------~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFA----R-EG-------ARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHH----H-CC-------CeEEEecCC
Confidence 367789999998 444555555554 3 35 368888765
No 435
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=50.35 E-value=21 Score=39.03 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=27.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
...|++|+|+|.||+..|..|.. .| .+++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g-------~~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AG-------HTVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cC-------CeEEEEecC
Confidence 34799999999999999988864 35 368889875
No 436
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=49.98 E-value=19 Score=33.34 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=26.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++++++|+|+|+|..|+-+|..|.+. | +++.++=|+
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~-----g-------~~V~~~~R~ 199 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKA-----G-------KSVTLVTRS 199 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTT-----C-------SEEEEEESS
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhh-----C-------CEEEEEecC
Confidence 57889999999999999888777542 3 677766554
No 437
>PLN02268 probable polyamine oxidase
Probab=49.95 E-value=19 Score=38.11 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.6
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010939 239 RFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~ 258 (497)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999976
No 438
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=49.92 E-value=20 Score=38.36 Aligned_cols=32 Identities=34% Similarity=0.633 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
+++|+|||-+|.=+|+.+.+ .| +++.+||++-
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~ 34 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRN 34 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccc
Confidence 68999999999999994433 36 8898888763
No 439
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=49.77 E-value=21 Score=34.49 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=23.8
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+.+.+++|.|+ |.-|..+|+.|.+ +|. +++++|++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~-----~G~-------~v~~~~r~ 39 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLA-----EGA-------RVVIADIK 39 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----cCC-------EEEEEcCC
Confidence 367889999997 4445555555543 363 57888764
No 440
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=49.61 E-value=1.2e+02 Score=30.82 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=29.0
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010939 308 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 349 (497)
Q Consensus 308 ~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIF 349 (497)
++.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 265 ~~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 265 DVPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred CHHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 35566666 89999888754 48899999999 6788887
No 441
>PRK09186 flagellin modification protein A; Provisional
Probab=49.53 E-value=20 Score=34.26 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=22.0
Q ss_pred CCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 235 LADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 235 l~d~riv~~GAG-sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+++.+++|.||+ ..|..+|+.|. + +|. ++.+++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~----~-~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAIL----E-AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHH----H-CCC-------EEEEEecC
Confidence 467899999984 44445555554 3 363 57777654
No 442
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=49.51 E-value=1e+02 Score=30.90 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=53.6
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCCCCCHHHHHhcc
Q 010939 238 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 316 (497)
Q Consensus 238 ~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~~~~L~e~v~~v 316 (497)
.||.++|+ |.-|-.+++.+... .++ +=..++|++. .+.... ..+ ......++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 48999999 99998888776432 232 3455677652 111111 111 1112367888886
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCceEEe
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 350 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIFa 350 (497)
++|++|=+|.+. ...++++...++ ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888654 346777666554 5677755
No 443
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=49.45 E-value=22 Score=37.21 Aligned_cols=34 Identities=21% Similarity=0.453 Sum_probs=26.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
..+|+|+|||.||+..|-.|.+ .|+ ++.++|+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-----~G~-------~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-----AGI-------DSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----cCC-------CEEEEEcCC
Confidence 4679999999999999988754 375 466777654
No 444
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=49.41 E-value=20 Score=37.66 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.9
Q ss_pred eEEEeCcChHHHHHHHHHHHH
Q 010939 239 RFLFLGAGEAGTGIAELIALE 259 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~ 259 (497)
||+|+|||.||+..|..|...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~ 22 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH 22 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999998753
No 445
>PRK06834 hypothetical protein; Provisional
Probab=49.37 E-value=22 Score=38.93 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=28.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
.+..|+|+|||.+|+-.|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45789999999999999988865 375 577888764
No 446
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=49.33 E-value=14 Score=32.87 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=25.7
Q ss_pred cchhhhHHHHHHHHHHHHH---hhCCCcceeeecCC
Q 010939 159 AIGQEYAELLHEFMTAVKQ---NYGERILIQFEDFA 191 (497)
Q Consensus 159 ~~g~~y~~~vdefv~av~~---~fGp~~lI~~EDf~ 191 (497)
.+.++||.|+|+|+..|.+ .||+....+||-|-
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~v 62 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGFV 62 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEEE
Confidence 5678999999999998888 56666566666553
No 447
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=49.21 E-value=19 Score=36.72 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=25.4
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
|+|+|||.||+..|..|.+ .|+ ++.++|+.--
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCCc
Confidence 7999999999999987764 364 6778888743
No 448
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=49.15 E-value=22 Score=42.75 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=28.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..||+|+|||.||+..|..|... | .++.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-----G-------~~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-----G-------VDVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----C-------CcEEEEecC
Confidence 467999999999999999988753 6 368888876
No 449
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=49.09 E-value=20 Score=38.45 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
-.|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 479999999999999988764 375 46677664
No 450
>PRK07538 hypothetical protein; Provisional
Probab=49.08 E-value=20 Score=37.68 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.9
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010939 239 RFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~ 258 (497)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999877654
No 451
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=48.97 E-value=22 Score=37.34 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=25.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
-|+|+|||.||+..|..|.++ |. .+.++|+-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCC
Confidence 489999999999999998664 64 577888754
No 452
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=48.96 E-value=22 Score=38.07 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=27.6
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..++|+|||.||+..|..+.+. | .++.++|++
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~ 37 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERY 37 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecc
Confidence 45699999999999999888653 6 589999986
No 453
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=48.90 E-value=1.6e+02 Score=31.17 Aligned_cols=114 Identities=14% Similarity=0.235 Sum_probs=72.6
Q ss_pred HHHHHHHcCCCCceec-CccchhHHHHHHHHHHHHHhC-CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 010939 196 FDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLG-GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 273 (497)
Q Consensus 196 f~iL~ryr~~~~~FnD-DiQGTa~V~lAgll~Al~~~g-~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~ 273 (497)
.+.+.+| .++||+|- +-..=-+=+||=++.-.+..| ++|++.||+++|-+.- .+++-++.++.+ .|+
T Consensus 114 ~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~--~v~~S~~~~~~~-~G~------- 182 (334)
T PRK12562 114 VETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARN--NMGNSMLEAAAL-TGL------- 182 (334)
T ss_pred HHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCC--CHHHHHHHHHHH-cCC-------
Confidence 3333444 47999993 222223557777777777666 4699999999998842 477777776655 474
Q ss_pred eEEEEccCCcccCCCccCCchhchhhhccc-CC---CCCHHHHHhccCCcEEEEcc
Q 010939 274 KIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP---VKELVDAVNAIKPTILIGTS 325 (497)
Q Consensus 274 ~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-~~---~~~L~e~v~~vkptvLIG~S 325 (497)
++.++-.+|+.-.. + .-+.-+.+++.. .. ..++.|++++ +||+.-.+
T Consensus 183 ~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~ 233 (334)
T PRK12562 183 DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--ADFIYTDV 233 (334)
T ss_pred EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888888763321 1 111112344321 11 3789999998 99999865
No 454
>PLN02463 lycopene beta cyclase
Probab=48.85 E-value=20 Score=39.08 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=25.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999988754 364 57888875
No 455
>PLN02342 ornithine carbamoyltransferase
Probab=48.84 E-value=2.5e+02 Score=30.06 Aligned_cols=132 Identities=16% Similarity=0.238 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhCCCcceeeecCCCCcHHHHHHHHcCCCCceec-CccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcC
Q 010939 168 LHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAG 246 (497)
Q Consensus 168 vdefv~av~~~fGp~~lI~~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAG 246 (497)
+.+.+..+ .+| .++++ +-.+.. ...+.+.+| .++||.|- |-..=-+=+|+=++.-.+..| +|++.||+++|-+
T Consensus 130 l~DTarvL-s~y-~D~Iv-iR~~~~-~~~~~la~~-~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~ 203 (348)
T PLN02342 130 TRDIARVL-SRY-NDIIM-ARVFAH-QDVLDLAEY-SSVPVINGLTDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDG 203 (348)
T ss_pred HHHHHHHH-HHh-CCEEE-EeCCCh-HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCC
Confidence 34444433 456 45544 222322 233444444 47999993 223334567788777666665 6999999999987
Q ss_pred hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhccc-----CCCCCHHHHHhccCCcEE
Q 010939 247 EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-----EPVKELVDAVNAIKPTIL 321 (497)
Q Consensus 247 sAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~-----~~~~~L~e~v~~vkptvL 321 (497)
. -+++-++.++.+ .|+ ++.++-.+|+.-. +.-...+++. ....++.|++++ +||+
T Consensus 204 ~---nva~Sli~~~~~-~G~-------~v~~~~P~~~~~~-------~~~~~~a~~~g~~~~~~~~d~~eav~~--aDVv 263 (348)
T PLN02342 204 N---NIVHSWLLLAAV-LPF-------HFVCACPKGYEPD-------AKTVEKARAAGISKIEITNDPAEAVKG--ADVV 263 (348)
T ss_pred c---hhHHHHHHHHHH-cCC-------EEEEECCcccccC-------HHHHHHHHHhCCCcEEEEcCHHHHhCC--CCEE
Confidence 5 388888887766 474 5888888876322 1111122211 123789999998 9999
Q ss_pred EEcc
Q 010939 322 IGTS 325 (497)
Q Consensus 322 IG~S 325 (497)
.-.+
T Consensus 264 y~~~ 267 (348)
T PLN02342 264 YTDV 267 (348)
T ss_pred EECC
Confidence 9875
No 456
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=48.83 E-value=34 Score=38.85 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=51.3
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc-----------
Q 010939 235 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----------- 302 (497)
Q Consensus 235 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~----------- 302 (497)
+++++|++-|| ||.|-.+++++++. + .++|.++|++=. .+..-.+++...
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~ig 309 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFYIG 309 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEEec
Confidence 67899999987 68888888888764 3 488999988511 222333333321
Q ss_pred -cCCCCCHHHHHhccCCcEEEEccC
Q 010939 303 -HEPVKELVDAVNAIKPTILIGTSG 326 (497)
Q Consensus 303 -~~~~~~L~e~v~~vkptvLIG~S~ 326 (497)
-.+...+.++++..|||+++=..+
T Consensus 310 dVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 310 DVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred ccccHHHHHHHHhcCCCceEEEhhh
Confidence 112246999999999999997665
No 457
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=48.82 E-value=49 Score=31.28 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 223 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 223 gll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..+.++...+.--.++++++.|+|+.|..++.+... .| .+++.++++
T Consensus 121 ~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 121 TAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 334455555544568899999999866665544432 35 467777664
No 458
>PRK05868 hypothetical protein; Validated
Probab=48.63 E-value=22 Score=37.19 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~ 258 (497)
.+|+|+|||.+|+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999877754
No 459
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=48.61 E-value=74 Score=32.26 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc-cCCCccCCch------hchhhhc-ccC
Q 010939 234 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI-VSSRLESLQH------FKKPWAH-EHE 304 (497)
Q Consensus 234 ~l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi-~~~r~~~l~~------~k~~~a~-~~~ 304 (497)
++++.+++|.|| |-.|..+++.|.. .|. +++.+|+..-- ...+.+.+.. .+..+.. +-.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~-----~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLS-----KGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 567789999997 8888888888865 363 57777764210 0000000100 0111111 112
Q ss_pred CCCCHHHHHhccCCcEEEEccCC
Q 010939 305 PVKELVDAVNAIKPTILIGTSGQ 327 (497)
Q Consensus 305 ~~~~L~e~v~~vkptvLIG~S~~ 327 (497)
...++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467888888889999988775
No 460
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=48.49 E-value=22 Score=39.58 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=27.3
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..|+|+|+|..|+++|..|.. .|+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~-----rG~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL-----RGL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH-----cCC-------eEEEEECC
Confidence 3569999999999999999875 374 68889975
No 461
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=48.39 E-value=33 Score=36.44 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=37.7
Q ss_pred CHHHHHhccCCcEEEEccCCC-----CCCCHHHHHHHHccCCCceEEecCCCC-CCCCCCH
Q 010939 308 ELVDAVNAIKPTILIGTSGQG-----RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTA 362 (497)
Q Consensus 308 ~L~e~v~~vkptvLIG~S~~~-----g~Fteevi~~Ma~~~~rPIIFaLSNPt-~~~E~~p 362 (497)
=+.|.+++ -|++|=+.-.| .+.|+++|+.|. .-.+|.=|+--+ .+||+|-
T Consensus 237 ~~a~~~~~--~DivITTAlIPGrpAP~Lvt~~mv~sMk---pGSViVDlAa~~GGNce~t~ 292 (356)
T COG3288 237 LVAEQAKE--VDIVITTALIPGRPAPKLVTAEMVASMK---PGSVIVDLAAETGGNCELTE 292 (356)
T ss_pred HHHHHhcC--CCEEEEecccCCCCCchhhHHHHHHhcC---CCcEEEEehhhcCCCccccc
Confidence 36666766 89999776555 479999999996 788998887755 4566664
No 462
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=48.15 E-value=27 Score=36.78 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=26.4
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccc
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 285 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~ 285 (497)
|+|+|||.||+.+|..|.+. + .| .++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~--~-~g-------~~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA--R-PD-------FRIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc--C-CC-------CeEEEEeCCCCCC
Confidence 78999999999999877643 1 24 4688888865433
No 463
>PLN02366 spermidine synthase
Probab=48.00 E-value=44 Score=34.86 Aligned_cols=93 Identities=15% Similarity=0.265 Sum_probs=50.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcccCC--CCCHHHHHh
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP--VKELVDAVN 314 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~~~~--~~~L~e~v~ 314 (497)
..||+++|.|..+ +++.++.. -+ .+++.+||-+.-+.+--.+.++.....+..+.-. ..+-.+.++
T Consensus 92 pkrVLiIGgG~G~--~~rellk~----~~------v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 92 PKKVLVVGGGDGG--VLREIARH----SS------VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCeEEEEcCCccH--HHHHHHhC----CC------CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh
Confidence 5799999999865 34444332 12 2689999988765543212232221122111111 134333444
Q ss_pred cc---CCcEEEEccCC-----CCCCCHHHHHHHHc
Q 010939 315 AI---KPTILIGTSGQ-----GRTFTKEVVEAMAS 341 (497)
Q Consensus 315 ~v---kptvLIG~S~~-----~g~Fteevi~~Ma~ 341 (497)
.. +-|++|-=+.. ..+||++..+.+.+
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~ 194 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVAR 194 (308)
T ss_pred hccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHH
Confidence 32 57888865433 23578888888764
No 464
>PRK06199 ornithine cyclodeaminase; Validated
Probab=47.99 E-value=1.1e+02 Score=32.98 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc
Q 010939 223 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 302 (497)
Q Consensus 223 gll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~ 302 (497)
+.+++-.+..+ .-.++.++|+|.=+....+.++... .. .++++++|+. ..+ ...+...+.+.
T Consensus 143 salaa~~LAr~--da~~l~iiG~G~QA~~~l~a~~~v~---~~------i~~V~v~~r~----~~~---a~~f~~~~~~~ 204 (379)
T PRK06199 143 PGVGARHLARK--DSKVVGLLGPGVMGKTILAAFMAVC---PG------IDTIKIKGRG----QKS---LDSFATWVAET 204 (379)
T ss_pred HHHHHHHhccC--CCCEEEEECCcHHHHHHHHHHHHhc---CC------ccEEEEECCC----HHH---HHHHHHHHHHh
Confidence 33444444433 3468999999998887777666531 11 3788888875 111 22222233221
Q ss_pred ------cCCCCCHHHHHhccCCcEEEEccC-C------CCCCCHHHHHHHHccCCCceEEecCCCCCCCCCCHHH
Q 010939 303 ------HEPVKELVDAVNAIKPTILIGTSG-Q------GRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEE 364 (497)
Q Consensus 303 ------~~~~~~L~e~v~~vkptvLIG~S~-~------~g~Fteevi~~Ma~~~~rPIIFaLSNPt~~~E~~ped 364 (497)
-....|.+|++++ +||++-+.+ . ..+|..++++ +.--|. .|. +.|+.++-
T Consensus 205 ~~~~~~v~~~~s~~eav~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lk------pG~hv~---~ig-~~eld~~~ 267 (379)
T PRK06199 205 YPQITNVEVVDSIEEVVRG--SDIVTYCNSGETGDPSTYPYVKREWVK------PGAFLL---MPA-ACRIDEGM 267 (379)
T ss_pred cCCCceEEEeCCHHHHHcC--CCEEEEccCCCCCCCCcCcEecHHHcC------CCcEEe---cCC-cccCCHHH
Confidence 1123789999988 999996542 1 1578888886 233333 243 46887654
No 465
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=47.96 E-value=26 Score=39.80 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=28.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
+..||+|+|+|.||+..|..|... |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 578999999999999999888753 63 578888764
No 466
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=47.90 E-value=16 Score=44.15 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=34.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
++|++.+|+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 468889999999999999999999875 86 8999999873
No 467
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=47.86 E-value=21 Score=39.74 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=25.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
.|+|+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999987754 25 4688888753
No 468
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=47.77 E-value=25 Score=38.07 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=26.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+-.++|+|+|+||+..|..+.+. | +++.++|++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-----G-------~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-----G-------LKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 34699999999999999887653 6 579999974
No 469
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=47.68 E-value=18 Score=41.74 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=27.4
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 235 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 235 l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
-+..+|+|+|||.||+..|-.|.. .|+ ++.++++.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r-----~Gi-------~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK-----KGF-------DVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh-----cCC-------eEEEEecc
Confidence 556799999999999999988865 375 46677764
No 470
>PRK06392 homoserine dehydrogenase; Provisional
Probab=47.67 E-value=76 Score=33.40 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=49.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHH-HhcCCChhhhcCeEEEEccCCcccCCCccCCchhc-hhhhcc----cCCCC--CHH
Q 010939 239 RFLFLGAGEAGTGIAELIALEIS-KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK-KPWAHE----HEPVK--ELV 310 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~-~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k-~~~a~~----~~~~~--~L~ 310 (497)
||.++|.|..|-+++++|.+--. ++.|+. .+=+-+.|++|.+++.+ .++..+ ..+.+. ..... ++.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~--Gldl~~l~~~~~~g~l~~~~~~~~~~~ 75 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNER--GLDIGKIISYKEKGRLEEIDYEKIKFD 75 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCc--CCChHHHHHHHhcCccccCCCCcCCHH
Confidence 79999999999999999876210 112321 12355679999888765 233221 111111 01112 566
Q ss_pred HHHhccCCcEEEEccC
Q 010939 311 DAVNAIKPTILIGTSG 326 (497)
Q Consensus 311 e~v~~vkptvLIG~S~ 326 (497)
+.++ .++|++|=+++
T Consensus 76 ~ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 76 EIFE-IKPDVIVDVTP 90 (326)
T ss_pred HHhc-CCCCEEEECCC
Confidence 6655 58999999874
No 471
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=47.62 E-value=22 Score=39.18 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=25.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..+|+|+|||.+|+..|..|.. .|+ ++.++|++
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~-----~G~-------~v~viE~~ 55 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ-----QGV-------PVVLLDDD 55 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEeCC
Confidence 4589999999999999988754 375 36666655
No 472
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.59 E-value=24 Score=38.43 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~ 258 (497)
.++++||+|+|.|..|.++|++|..
T Consensus 5 ~~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 5 QLEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred hcCCCEEEEEccchhhHHHHHHHHH
Confidence 3567899999999999999999875
No 473
>PTZ00367 squalene epoxidase; Provisional
Probab=47.44 E-value=29 Score=39.10 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=30.6
Q ss_pred HHhCCCC---CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 229 KFLGGSL---ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 229 ~~~g~~l---~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
++..+|. .+-+|+|+|||.||+..|..|.+ .|. ++.++++..
T Consensus 22 ~~~~~~~~~~~~~dViIVGaGiaGlalA~aLar-----~G~-------~V~VlEr~~ 66 (567)
T PTZ00367 22 RLRFKPARTNYDYDVIIVGGSIAGPVLAKALSK-----QGR-------KVLMLERDL 66 (567)
T ss_pred HHccCccccccCccEEEECCCHHHHHHHHHHHh-----cCC-------EEEEEcccc
Confidence 3445554 45589999999999999988754 363 577777753
No 474
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=47.17 E-value=1.9e+02 Score=30.61 Aligned_cols=112 Identities=20% Similarity=0.319 Sum_probs=69.2
Q ss_pred HHHHHHcCCCCceec-CccchhHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 010939 197 DLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI 275 (497)
Q Consensus 197 ~iL~ryr~~~~~FnD-DiQGTa~V~lAgll~Al~~~g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i 275 (497)
+-+.+| .++|++|- |-.-=-+=+||=++.-.+.. .+|++.||+++|.+.- ++++-++.++.+ -|+ ++
T Consensus 116 ~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~-g~l~g~~va~vGd~~~--~v~~Sl~~~~~~-~g~-------~v 183 (331)
T PRK02102 116 EELAKY-SGVPVWNGLTDEWHPTQMLADFMTMKEHF-GPLKGLKLAYVGDGRN--NMANSLMVGGAK-LGM-------DV 183 (331)
T ss_pred HHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHh-CCCCCCEEEEECCCcc--cHHHHHHHHHHH-cCC-------EE
Confidence 333444 47999992 21222345667766655554 4699999999999853 488888877665 464 68
Q ss_pred EEEccCCcccCCCccCCchhchhhhcc-cCC---CCCHHHHHhccCCcEEEEcc
Q 010939 276 WLVDSKGLIVSSRLESLQHFKKPWAHE-HEP---VKELVDAVNAIKPTILIGTS 325 (497)
Q Consensus 276 ~~vD~~GLi~~~r~~~l~~~k~~~a~~-~~~---~~~L~e~v~~vkptvLIG~S 325 (497)
.++-.+|+.-.. + .-+.-+.+++. ... ..++.|++++ +||+.-.+
T Consensus 184 ~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt~~ 232 (331)
T PRK02102 184 RICAPKELWPEE--E-LVALAREIAKETGAKITITEDPEEAVKG--ADVIYTDV 232 (331)
T ss_pred EEECCcccccCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 888887763321 1 11111223332 111 3689999998 99998753
No 475
>PLN02568 polyamine oxidase
Probab=47.17 E-value=13 Score=41.59 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHH
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALE 259 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~ 259 (497)
+..+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 456899999999999999999764
No 476
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=47.16 E-value=22 Score=38.88 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=27.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
..|||+|+|.+|+++|..+.. .|+ ++.+++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECCC
Confidence 479999999999999999975 374 588999763
No 477
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=47.14 E-value=19 Score=37.26 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.7
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 010939 239 RFLFLGAGEAGTGIAELIAL 258 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~ 258 (497)
+|+|+|||.||+..|-.|..
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988764
No 478
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=47.13 E-value=23 Score=38.13 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=26.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+--++|+|+|+||+..|..+.+ .| .++.++|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-----~G-------~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE-----HG-------AKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH-----CC-------CcEEEeccc
Confidence 3468999999999999988765 36 578899985
No 479
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=47.09 E-value=32 Score=38.25 Aligned_cols=79 Identities=14% Similarity=0.301 Sum_probs=47.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhcc---cCCCCCH
Q 010939 233 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKEL 309 (497)
Q Consensus 233 ~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~~---~~~~~~L 309 (497)
..|...|++|+|-++-+.|+++.|.+. .|+. +..++.. .....+.+.+.-+.+... ......+
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~ei 366 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTEV 366 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHHH
Confidence 678889999999999999999999765 3873 2222321 110000011111111110 0112357
Q ss_pred HHHHhccCCcEEEEcc
Q 010939 310 VDAVNAIKPTILIGTS 325 (497)
Q Consensus 310 ~e~v~~vkptvLIG~S 325 (497)
.+.|+..+||++||.|
T Consensus 367 ~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 367 GDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHhcCCCEEEECc
Confidence 7888999999999965
No 480
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=46.98 E-value=22 Score=36.78 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=27.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 010939 237 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 283 (497)
Q Consensus 237 d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GL 283 (497)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.--
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCCC
Confidence 4579999999999999977653 364 6888888643
No 481
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=46.88 E-value=29 Score=37.72 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=27.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+..||+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 56799999999999999888754 363 57788875
No 482
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=46.87 E-value=1.1e+02 Score=29.45 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=23.5
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc--cCCCceEEecCC
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMAS--LNEKPIIFSLSN 353 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~--~~~rPIIFaLSN 353 (497)
+-|++|++|..| -|+++++.+.. ...-|+|-=-+|
T Consensus 111 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 111 EGDVLLGISTSG--NSGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 469999999987 78999887753 233444443333
No 483
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=46.86 E-value=24 Score=37.82 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=23.2
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 010939 240 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 284 (497)
Q Consensus 240 iv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi 284 (497)
|||+|+|.||+.-|-.... .| .++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CC-------CEEEEEECCccC
Confidence 7999999999888776654 47 479999998865
No 484
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=46.84 E-value=89 Score=29.97 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 232 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 232 g~~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
..++++.+++|.||++ ||...++..+.+ +|. +++++|++
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 3468889999999732 344444444444 463 68988885
No 485
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=46.81 E-value=29 Score=35.51 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=29.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 284 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi 284 (497)
...+|+|+|+|-+|+.+|-.|.+ .|. ++.++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~-----~G~-------~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE-----RGA-------DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH-----cCC-------EEEEEecCccC
Confidence 35689999999999999888865 362 78888877653
No 486
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=46.79 E-value=25 Score=39.01 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+++++|.|.-|..+|+.|.+ +| .++.++|++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~-----~g-------~~vvvId~d 449 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA-----AG-------IPLVVIETS 449 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH-----CC-------CCEEEEECC
Confidence 588999999999999998864 25 468889886
No 487
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=46.73 E-value=25 Score=38.39 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=30.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
.+++++|||+|+|..|+-||..|... -++++++-+.+
T Consensus 201 ~~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 201 PFKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 46789999999999999999988653 26788877654
No 488
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=46.62 E-value=21 Score=38.60 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=20.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 239 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 239 riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+|+|+|||+||+-.|-.+.+ .| .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999988887743 35 578888886
No 489
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=46.59 E-value=25 Score=36.90 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=25.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
.+|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-----AGI-------DNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCC-------CEEEEECCC
Confidence 579999999999999977654 476 467777764
No 490
>PRK13937 phosphoheptose isomerase; Provisional
Probab=46.56 E-value=85 Score=29.92 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMA 340 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma 340 (497)
+-|++|++|..| -|+++++.+.
T Consensus 106 ~~Dl~i~iS~sG--~t~~~~~~~~ 127 (188)
T PRK13937 106 PGDVLIGISTSG--NSPNVLAALE 127 (188)
T ss_pred CCCEEEEEeCCC--CcHHHHHHHH
Confidence 369999999987 6889888775
No 491
>PRK07478 short chain dehydrogenase; Provisional
Probab=46.49 E-value=62 Score=31.07 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGs-Ag~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
++++.+++|.||++ .|..+|+.+. + .| -+++++++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~----~-~G-------~~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFA----R-EG-------AKVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHH----H-CC-------CEEEEEeCC
Confidence 46778999999853 4555555554 3 36 368888775
No 492
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=46.31 E-value=1.1e+02 Score=33.15 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=27.8
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCceEE
Q 010939 308 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 349 (497)
Q Consensus 308 ~L~e~v~~vkptvLIG~S~~~g~Fteevi~~Ma~~~~rPIIF 349 (497)
++.+.+.. .|+++=.|... .|.--++++|+ +.+|+|.
T Consensus 363 ~v~~~l~~--aDv~vlpS~~E-g~p~~vlEAma--~G~PVVa 399 (475)
T cd03813 363 NVKEYLPK--LDVLVLTSISE-GQPLVILEAMA--AGIPVVA 399 (475)
T ss_pred cHHHHHHh--CCEEEeCchhh-cCChHHHHHHH--cCCCEEE
Confidence 45556654 88888776544 48889999999 6889887
No 493
>PTZ00188 adrenodoxin reductase; Provisional
Probab=46.24 E-value=36 Score=38.17 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC----CcccCC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK----GLIVSS 287 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~----GLi~~~ 287 (497)
...||+|+|||.||+-.|..++.. .| -++.++|+. ||+.-+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~----~g-------~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH----ER-------VKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh----cC-------CeEEEEecCCCCccEEEEe
Confidence 356999999999999999977642 25 357888876 555443
No 494
>PRK06126 hypothetical protein; Provisional
Probab=45.83 E-value=24 Score=38.72 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=27.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 282 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~G 282 (497)
.+.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 45689999999999999988754 475 477777653
No 495
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=45.66 E-value=61 Score=33.60 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=25.1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCC--ceEEecC-CCC
Q 010939 317 KPTILIGTSGQGRTFTKEVVEAMASLNEK--PIIFSLS-NPT 355 (497)
Q Consensus 317 kptvLIG~S~~~g~Fteevi~~Ma~~~~r--PIIFaLS-NPt 355 (497)
+-|++||+|..| =|++++..+....++ |+ ++++ ||.
T Consensus 127 ~~DvvI~IS~SG--~T~~vi~al~~Ak~~Ga~~-IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASG--RTPYVIGALEYAKQIGATT-IALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeE-EEEECCCC
Confidence 469999999987 578888887654443 55 4554 555
No 496
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=45.48 E-value=59 Score=33.17 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccCCCccCCchhchhhhc-ccCCCCCHHHH
Q 010939 235 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDA 312 (497)
Q Consensus 235 l~d~riv~~GA-GsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~~a~-~~~~~~~L~e~ 312 (497)
+++.+|+|.|| |..|..+++.|++. |- ..+++++|++..-.......+...+..+.. +-....++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 77777777777642 31 136888886522100000001100111111 11222457777
Q ss_pred HhccCCcEEEEccCCCCC----C------------CHHHHHHHHccCCCceEEecC
Q 010939 313 VNAIKPTILIGTSGQGRT----F------------TKEVVEAMASLNEKPIIFSLS 352 (497)
Q Consensus 313 v~~vkptvLIG~S~~~g~----F------------teevi~~Ma~~~~rPIIFaLS 352 (497)
++. +|++|=+.+.... + +..+++++.++.-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 775 8999977664321 1 225666776655567888544
No 497
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=45.41 E-value=1e+02 Score=29.81 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=23.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 234 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 234 ~l~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
+|++.+++|.|+++ ||...++..+.+ +| -+++++|++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G-------~~v~~~~~~ 42 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NG-------ANVVNADIH 42 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CC-------CEEEEEeCC
Confidence 47788999999753 444555555544 36 367777765
No 498
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=45.41 E-value=25 Score=38.65 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=25.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 010939 236 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 281 (497)
Q Consensus 236 ~d~riv~~GAGsAg~Gia~ll~~~~~~~~G~s~eeA~~~i~~vD~~ 281 (497)
.+.+|+|+|||.+|+..|..|.. .|+ ++.++|+.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~-----~G~-------~v~v~Er~ 42 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ-----YGV-------RVLVLERW 42 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 45689999999999999988864 364 45566655
No 499
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=45.29 E-value=14 Score=39.47 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=19.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 010939 238 QRFLFLGAGEAGTGIAELIALE 259 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~ 259 (497)
.+|+|+|||-||+..|..|.+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~ 23 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKL 23 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhh
Confidence 3799999999999999999764
No 500
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=45.26 E-value=17 Score=40.47 Aligned_cols=44 Identities=34% Similarity=0.332 Sum_probs=30.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCC--ChhhhcCeE-----EEEccCCcccC
Q 010939 238 QRFLFLGAGEAGTGIAELIALEISKQTNM--PLEETRKKI-----WLVDSKGLIVS 286 (497)
Q Consensus 238 ~riv~~GAGsAg~Gia~ll~~~~~~~~G~--s~eeA~~~i-----~~vD~~GLi~~ 286 (497)
+||+|+|||-||++.|..|.++ |. +.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999875 65 333444432 12456665553
Done!