BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010940
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 221/507 (43%), Gaps = 85/507 (16%)
Query: 11 HFVLIPLMSPGHLIPMIDMA-RLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLL 69
H +IP GHLIP+++ A RL+ HG+ VT V +R V L +
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPS---KAQRTVLDSLPSSIS 64
Query: 70 QLEFPSVESGLPQGCENMDKLPSRDLIKNFFHAASMLKQP-FEQLFDKLHPRPSCIISGK 128
+ P V ++ L S I++ P ++FD + G
Sbjct: 65 SVFLPPV---------DLTDLSSSTRIESRISLTVTRSNPELRKVFD-------SFVEGG 108
Query: 129 NLPWTV----------NSAIKFKIPTILFDGMGCFACCCTHKLEISKVSKF--------- 169
LP + + A++F +P +F A + L + K+ +
Sbjct: 109 RLPTALVVDLFGTDAFDVAVEFHVPPYIF--YPTTANVLSFFLHLPKLDETVSCEFRELT 166
Query: 170 ESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQ-VRHNIRAAEQSADGIVVNTFEELE 228
E ++PG + + L+PA D + + HN + ++ A+GI+VNTF ELE
Sbjct: 167 EPLMLPGC------VPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKE-AEGILVNTFFELE 219
Query: 229 AEYVKEYKRVKGDK--VWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEP 286
+K + DK V+ +GP+ +NI K E + E +CLKWLD+
Sbjct: 220 PNAIKALQEPGLDKPPVYPVGPL-----VNIGKQEAKQTEES-------ECLKWLDNQPL 267
Query: 287 GSVIYACLGSICGLATWQXXXXXXXXXASSQPFIWVIR---GGERSQGLEKWIQXXXXX- 342
GSV+Y GS L Q S Q F+WVIR G S + Q
Sbjct: 268 GSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTF 327
Query: 343 ------XXXXXXXXIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFA 396
+I WAPQ +L+H + GGFLTHCGWNSTLE V +G+PL+ PL+A
Sbjct: 328 LPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYA 387
Query: 397 EQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRR 456
EQ N L +S I AA+ D +++RE+V ++ LM+ G++G+ R
Sbjct: 388 EQKMNAVL--------LSEDIRAALRPRAGDDG--LVRREEVARVVKGLME-GEEGKGVR 436
Query: 457 KRARQLGEIANRAIGVGGSSHRNIEML 483
+ ++L E A R + G+S + + ++
Sbjct: 437 NKMKELKEAACRVLKDDGTSTKALSLV 463
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 128/513 (24%), Positives = 221/513 (43%), Gaps = 79/513 (15%)
Query: 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQ 70
H V+IP GH+ P+ +A+LL G +T V T N R + G +
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFT----D 65
Query: 71 LEFPSVESGLPQGCENMD---KLPS--RDLIKNFFHAASMLKQPFEQLFDKLH-----PR 120
F S+ GL + D +P+ + + KNF +P+ +L +L+ P
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFL-------KPYCELLTRLNHSTNVPP 118
Query: 121 PSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVSKFESFV------- 173
+C++S + +T+ +A +F++P +L+ AC + V F SFV
Sbjct: 119 VTCLVSDCCMSFTIQAAEEFELPNVLY--FSSSAC------SLLNVMHFRSFVERGIIPF 170
Query: 174 -----------------VPGLPH-RIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQS 215
+PGL + R++ I NP ++ +V +
Sbjct: 171 KDESYLTNGCLETKVDWIPGLKNFRLKDI-VDFIRTTNPNDIMLEFFIEVADRVNKDTT- 228
Query: 216 ADGIVVNTFEELEAEYVKEYKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYE 275
I++NTF ELE++ + ++ IGP+ + K + + + + +
Sbjct: 229 ---ILLNTFNELESDVINALSSTIP-SIYPIGPLPSLLK-QTPQIHQLDSLDSNLWKEDT 283
Query: 276 QCLKWLDSWEPGSVIYACLGSICGLATWQXXXXXXXXXASSQPFIWVIRGGERSQGLEKW 335
+CL WL+S EPGSV+Y GS + Q + F+W+IR G
Sbjct: 284 ECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGS--- 340
Query: 336 IQXXXXXXXXXXXXXIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLF 395
+ +I W PQ +L+H +IGGFLTHCGWNST E + AGVP++ P F
Sbjct: 341 VIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFF 400
Query: 396 AEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKR 455
A+Q + + IG+ + +KRE++ + I +++ G +G+K
Sbjct: 401 ADQPTDCRFICNEWEIGMEIDTN--------------VKREELAKLINEVI-AGDKGKKM 445
Query: 456 RKRARQLGEIANRAIGVGGSSHRNIEMLIEFVI 488
+++A +L + A GG S+ N+ +I+ V+
Sbjct: 446 KQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 131/286 (45%), Gaps = 35/286 (12%)
Query: 202 LTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKVWCIGPVSACNKLNIDKAE 261
+++ H + A + +N+FEEL+ + K K IGP + +
Sbjct: 200 FSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKS-KLKTYLNIGPFNLITPPPV---- 254
Query: 262 RCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQXXXXXXXXXASSQPFIW 321
V + CL+WL +P SV+Y G++ + AS PFIW
Sbjct: 255 ---------VPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIW 305
Query: 322 VIRGGERSQGLEKWIQXXXXXXXXXXXXXIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLE 381
+R R E +++ ++ WAPQ +L+H A+G F+THCGWNS E
Sbjct: 306 SLRDKARVHLPEGFLEKTRGYG-------MVVPWAPQAEVLAHEAVGAFVTHCGWNSLWE 358
Query: 382 GVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEA 441
V+ GVPL+ P F +Q N ++ VL IGV + G+ KSGL+
Sbjct: 359 SVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVR------IEGGVFTKSGLM-------SC 405
Query: 442 IEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFV 487
++++ + K G+K R+ R L E A+RA+G GSS N L++ V
Sbjct: 406 FDQILSQEK-GKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 223/497 (44%), Gaps = 72/497 (14%)
Query: 12 FVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRF-NITIKRAVESGLSIQL 68
+ IP GHL ++ A+LL H + +T+ F + IK + S IQL
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQL 71
Query: 69 LQLEFPSVESGLPQGCENMDKLPSRDLIKN-FFHAASMLKQPFEQLFDKLHPRPSCIISG 127
+ L P VE P ++L+K+ F+ + L+ + + S + G
Sbjct: 72 IDL--PEVEP------------PPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVG 117
Query: 128 KNLPWTVNSAI----KFKIPTILF--DGMGCFACCCTHK-LEISKV-----SKFESFVVP 175
L + S I +F IP+ LF +G + + K +I +V + +P
Sbjct: 118 LVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIP 177
Query: 176 GLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSAD--GIVVNTFEELEAEYVK 233
G I Q+P + P +D + + + AE+ D GI+VNTF +LE +
Sbjct: 178 G-------ISNQVPSNVLPDACFNKDGGYIAY-YKLAERFRDTKGIIVNTFSDLEQSSID 229
Query: 234 EYKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDD--YEQCLKWLDSWEPGSVIY 291
D I P+ A L +D +G+ +D ++ LKWLD SV++
Sbjct: 230 ALY----DHDEKIPPIYAVGPL-LD----LKGQPNPKLDQAQHDLILKWLDEQPDKSVVF 280
Query: 292 ACLGSI-CGLATWQXXXXXXXXXASSQPFIWVIRGGER--SQGLEKWIQXXXXXXXXXXX 348
C GS+ Q S F+W ++ +G +W++
Sbjct: 281 LCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKG------ 334
Query: 349 XXIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQV 408
+I GWAPQV +L+H+AIGGF++HCGWNS LE + GVP++T P++AEQ N V+
Sbjct: 335 --MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 392
Query: 409 LGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANR 468
G+G+ + ++ K V+ E++++ ++ LMD+ K+ +++ E++
Sbjct: 393 WGVGLGLRVDYR-------KGSDVVAAEEIEKGLKDLMDKDS---IVHKKVQEMKEMSRN 442
Query: 469 AIGVGGSSHRNIEMLIE 485
A+ GGSS ++ LI+
Sbjct: 443 AVVDGGSSLISVGKLID 459
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 131/497 (26%), Positives = 223/497 (44%), Gaps = 72/497 (14%)
Query: 12 FVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRF-NITIKRAVESGLSIQL 68
+ IP GHL ++ A+LL H + +T+ F + IK + S IQL
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQL 71
Query: 69 LQLEFPSVESGLPQGCENMDKLPSRDLIKN-FFHAASMLKQPFEQLFDKLHPRPSCIISG 127
+ L P VE P ++L+K+ F+ + L+ + + S + G
Sbjct: 72 IDL--PEVEP------------PPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVG 117
Query: 128 KNLPWTVNSAI----KFKIPTILF--DGMGCFACCCTHK-LEISKV-----SKFESFVVP 175
L + S I +F IP+ LF +G + + K +I +V + +P
Sbjct: 118 LVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIP 177
Query: 176 GLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSAD--GIVVNTFEELEAEYVK 233
G I Q+P + P +D + + + AE+ D GI+VNTF +LE +
Sbjct: 178 G-------ISNQVPSNVLPDACFNKDGGYIAY-YKLAERFRDTKGIIVNTFSDLEQSSID 229
Query: 234 EYKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDD--YEQCLKWLDSWEPGSVIY 291
D I P+ A L +D +G+ +D ++ LKWLD SV++
Sbjct: 230 ALY----DHDEKIPPIYAVGPL-LD----LKGQPNPKLDQAQHDLILKWLDEQPDKSVVF 280
Query: 292 ACLGSI-CGLATWQXXXXXXXXXASSQPFIWVIRGGER--SQGLEKWIQXXXXXXXXXXX 348
C GS+ Q S F+W ++ +G +W++
Sbjct: 281 LCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKG------ 334
Query: 349 XXIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQV 408
+I GWAPQV +L+H+AIGGF++HCGWNS LE + GVP++T P++AEQ N V+
Sbjct: 335 --MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 392
Query: 409 LGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANR 468
G+G+ + ++ K V+ E++++ ++ LMD+ K+ +++ E++
Sbjct: 393 WGVGLGLRVDYR-------KGSDVVAAEEIEKGLKDLMDKDS---IVHKKVQEMKEMSRN 442
Query: 469 AIGVGGSSHRNIEMLIE 485
A+ GGSS ++ LI+
Sbjct: 443 AVVDGGSSLISVGKLID 459
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 138/319 (43%), Gaps = 48/319 (15%)
Query: 173 VVPGLPHRIELIKAQLPEALNPAGSHVQDL----TQVRHNIRAAEQSADGIVVNTFEELE 228
V+PG P EL + LPE + ++D+ + H + A+ + +N+F +
Sbjct: 178 VLPGFP---ELKASDLPEGV------IKDIDVPFATMLHKMGLELPRANAVAINSFATIH 228
Query: 229 AEYVKEYKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGS 288
E K + +GP N+ +R V D CL+WLD E S
Sbjct: 229 PLIENELNS-KFKLLLNVGP------FNLTTPQR-------KVSDEHGCLEWLDQHENSS 274
Query: 289 VIYACLGSICGLATWQXXXXXXXXXASSQPFIWVIRGGERSQGLEKWIQXXXXXXXXXXX 348
V+Y GS+ + PFIW RG + + + +++
Sbjct: 275 VVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGK---- 330
Query: 349 XXIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQV 408
I WAPQV +L H ++G FLTH GWNS LE + GVP+++ P F +Q N L V
Sbjct: 331 ---IVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESV 387
Query: 409 LGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANR 468
L IGV V V+ +E +K+A+E M K G R+K + L E A +
Sbjct: 388 LEIGVGV-------------DNGVLTKESIKKALELTMSSEKGGIMRQKIVK-LKESAFK 433
Query: 469 AIGVGGSSHRNIEMLIEFV 487
A+ G+S + LI+ V
Sbjct: 434 AVEQNGTSAMDFTTLIQIV 452
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 355 WAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVS 414
W PQ LL H F+TH G N E + G+P V PLFA+Q N + G V
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN-IAHXKARGAAVR 133
Query: 415 VGIEAAVTWGLEDKSGLVIKREKVKEAIEKL 445
V + L + VI KE + KL
Sbjct: 134 VDFNTXSSTDLLNALKRVINDPSYKENVXKL 164
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 352 IRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGI 411
+ W PQ+ +L+ + F+TH G ST+E +S VP+V P AEQ N + V+ LG+
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE-LGL 365
Query: 412 G 412
G
Sbjct: 366 G 366
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 352 IRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGI 411
+ W PQ+ +L R F+TH G + EG++ P++ P +QF N + +Q LG+
Sbjct: 287 VHDWVPQLAIL--RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADM-LQGLGV 343
Query: 412 GVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLM-DRGKQGEKRR 456
+ E A L + + ++ +V + ++ + ++G RR
Sbjct: 344 ARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRR 389
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 355 WAPQVLLLSH-RAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIG 412
W P +L+H RA LTH + LE +AGVPLV P FA + V LG+G
Sbjct: 288 WIPFHSVLAHARAC---LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLG 343
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQL 68
Q H + + GH+ P + + LA G ++T VTTPL F +K A G + L
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPL----FADEVKAA---GAEVVL 56
Query: 69 LQLEF 73
+ EF
Sbjct: 57 YKSEF 61
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 352 IRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQF 399
+ W PQ LL H + + H G +TL + AGVP ++ P + F
Sbjct: 296 LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
Glutamate (Murd) Ligase From Streptococcus Agalactiae To
1.5a
Length = 451
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 166 VSKFESFVVPGL----PHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVV 221
V + SF + G+ PH I +I P L+ GS +D + NI+ S+D +V+
Sbjct: 165 VXELSSFQLXGVKEFRPH-IAVITNLXPTHLDYHGS-FEDYVAAKWNIQNQXSSSDFLVL 222
Query: 222 NTFEELEAEYVKEYKRVKGDKVWCIGPVSACNKLN----IDKAERCRGENGSTVDD 273
N + + E K K I P S K++ DK +GEN +VDD
Sbjct: 223 NFNQGISKELAKTTK-------ATIVPFSTTEKVDGAYVQDKQLFYKGENIXSVDD 271
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 354 GWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQF-YNEKLAVQVLGIG 412
GW P LL R + H G + + + AG+P + P +QF + + AV GIG
Sbjct: 289 GWTPLHTLL--RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIG 346
Query: 413 V 413
+
Sbjct: 347 L 347
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 373 HCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAA 420
H G +TL +S GVP V+ P+ AE + + +L + G GV V E A
Sbjct: 306 HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARL-LHAAGAGVEVPWEQA 352
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 373 HCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAA 420
H G +TL +S GVP V+ P+ AE + + +L + G GV V E A
Sbjct: 307 HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARL-LHAAGAGVEVPWEQA 353
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 398 QFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEK 444
+ + K ++VL IG G AAVT + + GLV+ E++ E EK
Sbjct: 71 ELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEK 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,373,914
Number of Sequences: 62578
Number of extensions: 580709
Number of successful extensions: 1552
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1520
Number of HSP's gapped (non-prelim): 22
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)