Query 010940
Match_columns 497
No_of_seqs 133 out of 1338
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:17:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 7.2E-69 1.6E-73 545.9 48.4 478 9-494 8-491 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.3E-66 2.9E-71 530.4 47.3 462 1-490 1-472 (477)
3 PLN03007 UDP-glucosyltransfera 100.0 3.1E-65 6.7E-70 524.9 47.8 465 8-491 4-482 (482)
4 PLN02208 glycosyltransferase f 100.0 1.3E-64 2.8E-69 511.1 44.7 434 9-489 4-439 (442)
5 PLN02764 glycosyltransferase f 100.0 1E-63 2.2E-68 501.7 46.5 443 8-493 4-449 (453)
6 PLN02992 coniferyl-alcohol glu 100.0 5.5E-64 1.2E-68 508.1 44.8 435 8-489 4-469 (481)
7 PLN00164 glucosyltransferase; 100.0 3.7E-63 8.1E-68 506.9 45.7 445 7-490 1-474 (480)
8 PLN02410 UDP-glucoronosyl/UDP- 100.0 5.4E-63 1.2E-67 500.6 45.8 429 8-488 6-449 (451)
9 PLN02173 UDP-glucosyl transfer 100.0 3.2E-63 6.9E-68 499.9 43.7 439 5-488 1-447 (449)
10 PLN00414 glycosyltransferase f 100.0 4E-63 8.7E-68 500.8 43.6 435 9-491 4-442 (446)
11 PLN03015 UDP-glucosyl transfer 100.0 6.8E-63 1.5E-67 497.2 44.3 439 7-487 1-466 (470)
12 PLN02555 limonoid glucosyltran 100.0 8.2E-63 1.8E-67 500.9 45.2 454 1-490 1-470 (480)
13 PLN02210 UDP-glucosyl transfer 100.0 6.5E-63 1.4E-67 502.0 42.4 447 1-489 1-455 (456)
14 PLN02207 UDP-glycosyltransfera 100.0 2.1E-62 4.4E-67 495.8 43.9 447 7-491 1-467 (468)
15 PLN03004 UDP-glycosyltransfera 100.0 2.8E-62 6.2E-67 493.3 41.0 431 8-478 2-450 (451)
16 PLN02562 UDP-glycosyltransfera 100.0 7.8E-62 1.7E-66 493.6 43.6 423 9-487 6-447 (448)
17 PLN02670 transferase, transfer 100.0 1.9E-61 4.2E-66 489.2 43.8 453 8-491 5-467 (472)
18 PLN02152 indole-3-acetate beta 100.0 3.2E-61 7E-66 486.1 43.7 441 8-487 2-454 (455)
19 PLN02448 UDP-glycosyltransfera 100.0 3.4E-61 7.3E-66 492.6 44.4 436 7-489 8-457 (459)
20 PLN02554 UDP-glycosyltransfera 100.0 1.4E-60 3.1E-65 489.7 44.5 446 9-490 2-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 3.6E-60 7.9E-65 486.0 43.9 452 7-490 1-473 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.1E-48 2.4E-53 402.8 30.8 412 9-491 20-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.7E-49 8.1E-54 412.9 1.4 386 11-469 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 9.3E-43 2E-47 353.4 31.5 382 15-488 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 3.2E-42 7E-47 350.8 23.3 386 10-486 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 1E-40 2.2E-45 334.9 23.5 393 9-492 1-403 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 3.6E-40 7.9E-45 345.0 17.4 405 9-468 5-438 (496)
28 PRK12446 undecaprenyldiphospho 99.9 1.4E-25 3.1E-30 222.5 27.0 312 11-448 3-325 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 4.4E-23 9.5E-28 202.3 28.3 326 10-460 1-336 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 2.1E-23 4.5E-28 205.7 23.2 306 10-445 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 2.7E-21 5.8E-26 190.6 22.8 122 288-448 189-314 (321)
32 PRK00726 murG undecaprenyldiph 99.8 2.8E-17 6.1E-22 164.8 30.9 313 10-448 2-324 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.3E-16 2.8E-21 159.4 25.4 314 11-448 1-324 (350)
34 TIGR01133 murG undecaprenyldip 99.7 6.1E-15 1.3E-19 147.3 28.7 310 10-448 1-321 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 3.5E-15 7.5E-20 150.3 25.2 352 10-484 6-383 (385)
36 COG4671 Predicted glycosyl tra 99.6 3.9E-14 8.5E-19 132.8 19.5 339 7-447 7-364 (400)
37 TIGR03590 PseG pseudaminic aci 99.6 1.9E-14 4E-19 138.5 16.9 104 288-404 171-278 (279)
38 PRK13609 diacylglycerol glucos 99.6 1.5E-12 3.3E-17 131.7 28.1 132 287-448 202-338 (380)
39 PRK00025 lpxB lipid-A-disaccha 99.6 5.4E-13 1.2E-17 134.9 23.6 111 10-147 2-115 (380)
40 PRK13608 diacylglycerol glucos 99.5 3.7E-11 8E-16 121.7 26.6 132 287-448 202-338 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.4 7.2E-15 1.6E-19 130.6 -1.4 136 289-448 1-144 (167)
42 PLN02605 monogalactosyldiacylg 99.4 1.9E-10 4.1E-15 116.4 26.5 132 286-448 205-347 (382)
43 TIGR03492 conserved hypothetic 99.4 2.1E-10 4.5E-15 115.9 26.5 133 287-448 205-364 (396)
44 PLN02871 UDP-sulfoquinovose:DA 99.4 1.1E-09 2.4E-14 113.8 30.9 141 289-462 264-414 (465)
45 PF03033 Glyco_transf_28: Glyc 99.3 5.4E-13 1.2E-17 114.7 3.9 126 12-152 1-132 (139)
46 cd03823 GT1_ExpE7_like This fa 99.3 1.4E-08 3E-13 101.0 31.4 139 288-459 191-340 (359)
47 cd03814 GT1_like_2 This family 99.3 1.4E-08 3.1E-13 101.1 31.3 94 346-461 245-345 (364)
48 cd03817 GT1_UGDG_like This fam 99.2 1.5E-08 3.2E-13 101.2 29.3 96 347-465 258-360 (374)
49 cd03794 GT1_wbuB_like This fam 99.2 1.6E-08 3.5E-13 101.3 29.7 145 288-464 220-381 (394)
50 cd03818 GT1_ExpC_like This fam 99.2 1.1E-07 2.3E-12 96.8 34.1 95 347-461 280-379 (396)
51 cd03800 GT1_Sucrose_synthase T 99.2 1.1E-07 2.3E-12 96.6 31.6 93 347-461 282-381 (398)
52 cd03808 GT1_cap1E_like This fa 99.1 6.6E-08 1.4E-12 95.6 29.3 329 11-462 1-343 (359)
53 cd03816 GT1_ALG1_like This fam 99.1 1.2E-07 2.5E-12 97.1 31.3 123 8-149 2-129 (415)
54 COG3980 spsG Spore coat polysa 99.1 6.7E-09 1.4E-13 95.2 17.7 140 289-460 160-301 (318)
55 cd03801 GT1_YqgM_like This fam 99.1 3.5E-07 7.7E-12 90.5 31.8 318 20-459 14-352 (374)
56 cd04962 GT1_like_5 This family 99.1 3E-07 6.5E-12 92.4 31.0 94 347-462 252-350 (371)
57 PRK10307 putative glycosyl tra 99.1 9.5E-07 2.1E-11 90.4 33.6 144 289-464 230-389 (412)
58 cd03795 GT1_like_4 This family 99.0 3E-07 6.5E-12 91.6 29.1 148 289-464 192-348 (357)
59 PRK05749 3-deoxy-D-manno-octul 99.0 4.7E-07 1E-11 93.1 29.8 95 350-463 304-403 (425)
60 cd03805 GT1_ALG2_like This fam 99.0 1.3E-06 2.7E-11 88.7 32.7 93 347-462 279-378 (392)
61 cd03820 GT1_amsD_like This fam 99.0 3.6E-07 7.7E-12 89.9 27.8 95 347-463 234-334 (348)
62 TIGR03449 mycothiol_MshA UDP-N 99.0 6.7E-07 1.5E-11 91.2 29.6 95 347-463 282-383 (405)
63 cd03825 GT1_wcfI_like This fam 99.0 2E-06 4.2E-11 86.0 31.5 93 347-461 243-343 (365)
64 cd03798 GT1_wlbH_like This fam 99.0 2.6E-06 5.7E-11 84.6 31.6 80 347-448 258-344 (377)
65 cd03799 GT1_amsK_like This is 98.9 1.4E-06 3.1E-11 86.7 29.3 96 346-461 234-340 (355)
66 cd03821 GT1_Bme6_like This fam 98.9 3.8E-06 8.2E-11 83.6 32.1 94 347-462 261-359 (375)
67 TIGR02472 sucr_P_syn_N sucrose 98.9 6.8E-06 1.5E-10 84.8 33.8 93 347-459 316-417 (439)
68 cd03819 GT1_WavL_like This fam 98.9 1.6E-06 3.6E-11 86.3 28.5 151 289-464 186-347 (355)
69 cd03796 GT1_PIG-A_like This fa 98.9 3.3E-06 7.1E-11 86.0 29.7 78 347-448 249-333 (398)
70 PRK14089 ipid-A-disaccharide s 98.8 6.2E-07 1.4E-11 88.2 21.4 154 288-466 168-332 (347)
71 cd05844 GT1_like_7 Glycosyltra 98.8 9.2E-06 2E-10 81.4 29.9 93 347-461 244-349 (367)
72 TIGR00236 wecB UDP-N-acetylglu 98.8 1.4E-06 2.9E-11 87.7 23.5 128 288-448 198-334 (365)
73 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 4.4E-07 9.4E-12 91.1 19.8 130 287-448 198-337 (363)
74 cd03822 GT1_ecORF704_like This 98.8 6.2E-06 1.3E-10 82.2 28.1 95 346-463 245-349 (366)
75 cd03811 GT1_WabH_like This fam 98.8 1.6E-06 3.4E-11 85.4 23.4 80 347-448 245-332 (353)
76 PRK09922 UDP-D-galactose:(gluc 98.8 3E-06 6.4E-11 85.0 24.9 151 289-465 181-343 (359)
77 TIGR02468 sucrsPsyn_pln sucros 98.8 3.2E-05 7E-10 85.1 33.6 163 276-462 469-651 (1050)
78 cd03807 GT1_WbnK_like This fam 98.7 6.3E-05 1.4E-09 74.5 32.4 79 347-449 250-333 (365)
79 cd03812 GT1_CapH_like This fam 98.7 1.2E-05 2.5E-10 80.3 26.6 81 347-450 248-333 (358)
80 PF04007 DUF354: Protein of un 98.7 1.9E-05 4E-10 77.3 26.6 111 11-150 2-112 (335)
81 cd04955 GT1_like_6 This family 98.7 3.6E-05 7.9E-10 76.8 29.8 124 291-448 196-330 (363)
82 cd04951 GT1_WbdM_like This fam 98.7 1.1E-05 2.4E-10 80.4 25.2 78 347-448 244-326 (360)
83 COG1519 KdtA 3-deoxy-D-manno-o 98.7 2.9E-05 6.3E-10 76.2 26.8 328 11-469 50-407 (419)
84 TIGR03087 stp1 sugar transfera 98.6 1.8E-05 3.9E-10 80.6 24.9 93 346-462 278-376 (397)
85 TIGR02149 glgA_Coryne glycogen 98.6 0.00012 2.6E-09 74.1 30.6 149 289-461 202-365 (388)
86 cd03802 GT1_AviGT4_like This f 98.6 4E-05 8.7E-10 75.6 26.4 128 290-448 173-308 (335)
87 cd03809 GT1_mtfB_like This fam 98.6 1.4E-05 2.9E-10 79.7 23.2 91 346-460 251-348 (365)
88 TIGR03088 stp2 sugar transfera 98.6 4.4E-05 9.5E-10 76.9 26.2 79 348-448 255-338 (374)
89 PLN02275 transferase, transfer 98.5 0.00064 1.4E-08 68.5 31.6 76 347-446 285-371 (371)
90 cd03804 GT1_wbaZ_like This fam 98.5 3.1E-05 6.8E-10 77.3 21.7 127 290-449 197-327 (351)
91 TIGR02470 sucr_synth sucrose s 98.5 0.00099 2.1E-08 72.0 33.8 127 9-150 255-417 (784)
92 PRK15179 Vi polysaccharide bio 98.4 0.00065 1.4E-08 73.1 32.2 97 347-463 573-674 (694)
93 PRK15427 colanic acid biosynth 98.4 0.00059 1.3E-08 69.6 30.7 93 347-461 278-384 (406)
94 KOG3349 Predicted glycosyltran 98.4 1.5E-06 3.2E-11 72.1 7.5 117 289-415 5-132 (170)
95 PF02350 Epimerase_2: UDP-N-ac 98.3 9.8E-06 2.1E-10 80.4 14.5 255 100-448 49-318 (346)
96 PF02684 LpxB: Lipid-A-disacch 98.3 0.00012 2.5E-09 72.8 20.9 166 286-477 183-365 (373)
97 PRK01021 lpxB lipid-A-disaccha 98.3 0.00049 1.1E-08 71.6 25.9 175 286-484 412-603 (608)
98 PLN00142 sucrose synthase 98.3 0.00096 2.1E-08 72.2 28.6 53 98-150 385-440 (815)
99 TIGR03568 NeuC_NnaA UDP-N-acet 98.2 0.00039 8.6E-09 69.7 23.0 129 288-447 202-338 (365)
100 PLN02846 digalactosyldiacylgly 98.2 0.0006 1.3E-08 69.7 24.0 123 290-448 230-363 (462)
101 cd03806 GT1_ALG11_like This fa 98.2 0.0034 7.3E-08 64.3 29.0 79 347-448 304-392 (419)
102 cd03792 GT1_Trehalose_phosphor 98.1 0.0041 8.9E-08 62.6 28.7 91 347-461 251-350 (372)
103 PLN02949 transferase, transfer 98.1 0.011 2.4E-07 61.1 31.1 132 8-154 32-173 (463)
104 PRK00654 glgA glycogen synthas 98.1 0.0022 4.9E-08 66.7 25.7 131 289-447 283-427 (466)
105 COG0763 LpxB Lipid A disacchar 98.0 0.0015 3.2E-08 63.8 21.4 183 277-486 178-378 (381)
106 TIGR02095 glgA glycogen/starch 98.0 0.01 2.3E-07 61.8 29.2 79 347-447 345-436 (473)
107 cd04949 GT1_gtfA_like This fam 98.0 0.0011 2.3E-08 66.7 20.8 101 347-466 260-363 (372)
108 COG0381 WecB UDP-N-acetylgluco 97.9 0.0016 3.5E-08 63.7 20.1 322 9-448 3-341 (383)
109 cd03791 GT1_Glycogen_synthase_ 97.9 0.011 2.5E-07 61.6 27.6 84 347-448 350-442 (476)
110 cd04950 GT1_like_1 Glycosyltra 97.9 0.04 8.7E-07 55.5 30.6 78 347-448 253-340 (373)
111 cd03813 GT1_like_3 This family 97.8 0.0034 7.5E-08 65.4 22.2 92 347-460 353-454 (475)
112 PLN02316 synthase/transferase 97.8 0.069 1.5E-06 59.8 32.3 114 348-484 900-1028(1036)
113 cd04946 GT1_AmsK_like This fam 97.8 0.00049 1.1E-08 70.3 14.5 98 347-463 288-392 (407)
114 COG5017 Uncharacterized conser 97.7 0.00027 5.9E-09 57.8 9.2 109 290-417 2-123 (161)
115 PF00534 Glycos_transf_1: Glyc 97.5 0.00044 9.6E-09 61.2 9.1 146 287-461 14-171 (172)
116 PF13844 Glyco_transf_41: Glyc 97.5 0.0032 7E-08 64.0 15.8 122 286-413 283-411 (468)
117 TIGR02918 accessory Sec system 97.5 0.018 3.9E-07 60.2 21.8 155 289-465 320-483 (500)
118 PRK14099 glycogen synthase; Pr 97.3 0.23 5.1E-06 51.8 27.3 40 8-47 2-47 (485)
119 cd01635 Glycosyltransferase_GT 97.3 0.018 3.8E-07 52.8 16.8 50 347-398 160-217 (229)
120 PRK15484 lipopolysaccharide 1, 97.1 0.036 7.9E-07 56.0 18.2 81 347-448 256-344 (380)
121 PLN02501 digalactosyldiacylgly 97.1 0.33 7.1E-06 51.9 24.7 75 349-448 602-681 (794)
122 PRK10125 putative glycosyl tra 97.1 0.45 9.7E-06 48.5 28.3 114 290-442 243-365 (405)
123 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0042 9E-08 52.4 7.6 80 347-448 52-135 (135)
124 PF13477 Glyco_trans_4_2: Glyc 96.6 0.021 4.5E-07 48.4 10.2 103 11-149 1-107 (139)
125 TIGR02193 heptsyl_trn_I lipopo 96.6 0.072 1.6E-06 52.3 15.4 43 11-53 1-45 (319)
126 PRK10017 colanic acid biosynth 96.5 1.3 2.8E-05 45.3 25.1 178 278-487 225-422 (426)
127 PF06722 DUF1205: Protein of u 96.4 0.0046 1E-07 48.8 4.0 55 274-328 27-86 (97)
128 COG3914 Spy Predicted O-linked 96.3 0.056 1.2E-06 55.4 12.3 117 285-411 427-556 (620)
129 PRK09814 beta-1,6-galactofuran 96.1 0.036 7.8E-07 54.9 9.8 111 347-485 206-331 (333)
130 PLN02939 transferase, transfer 96.1 3.3 7.1E-05 46.2 29.4 84 347-447 836-930 (977)
131 PHA01633 putative glycosyl tra 95.8 0.14 3.1E-06 50.4 12.5 85 347-448 200-307 (335)
132 KOG4626 O-linked N-acetylgluco 95.4 0.13 2.9E-06 53.1 10.5 123 287-418 758-890 (966)
133 PF13579 Glyco_trans_4_4: Glyc 95.1 0.035 7.6E-07 47.7 5.0 96 24-149 5-104 (160)
134 PRK15490 Vi polysaccharide bio 95.1 0.63 1.4E-05 48.7 14.6 65 347-418 454-523 (578)
135 PRK10422 lipopolysaccharide co 95.0 2.4 5.2E-05 42.2 18.5 48 6-53 2-51 (352)
136 PRK10916 ADP-heptose:LPS hepto 94.8 3.6 7.7E-05 40.9 19.2 104 10-146 1-106 (348)
137 COG1817 Uncharacterized protei 94.8 3.9 8.4E-05 39.2 20.3 111 16-153 6-116 (346)
138 PF12000 Glyco_trans_4_3: Gkyc 94.8 0.38 8.3E-06 42.2 10.5 96 35-150 1-97 (171)
139 PF06258 Mito_fiss_Elm1: Mitoc 94.5 4.1 9E-05 39.7 17.9 39 357-396 221-259 (311)
140 PRK14098 glycogen synthase; Pr 94.0 0.82 1.8E-05 47.8 13.0 80 347-446 361-449 (489)
141 TIGR02201 heptsyl_trn_III lipo 93.9 5.4 0.00012 39.5 18.0 105 11-146 1-108 (344)
142 PRK10964 ADP-heptose:LPS hepto 93.8 3.7 8E-05 40.3 16.5 43 10-52 1-45 (322)
143 TIGR02195 heptsyl_trn_II lipop 93.3 6 0.00013 39.0 17.1 43 11-53 1-45 (334)
144 PF08660 Alg14: Oligosaccharid 93.0 1 2.3E-05 39.6 9.9 115 15-149 3-129 (170)
145 cd03789 GT1_LPS_heptosyltransf 93.0 7.6 0.00016 37.1 16.9 43 11-53 1-45 (279)
146 PF13524 Glyco_trans_1_2: Glyc 93.0 0.81 1.7E-05 35.5 8.4 53 373-448 9-62 (92)
147 PF13439 Glyco_transf_4: Glyco 92.3 0.33 7.2E-06 42.3 6.0 32 18-49 10-41 (177)
148 COG0859 RfaF ADP-heptose:LPS h 90.8 18 0.00039 35.7 17.5 104 10-146 2-107 (334)
149 PRK02261 methylaspartate mutas 90.5 0.8 1.7E-05 38.8 6.1 61 7-72 1-61 (137)
150 TIGR02400 trehalose_OtsA alpha 90.2 2.3 5E-05 44.0 10.5 104 352-487 340-454 (456)
151 cd02067 B12-binding B12 bindin 90.1 2.7 5.9E-05 34.4 9.0 39 11-49 1-39 (119)
152 PHA01630 putative group 1 glyc 90.0 2.6 5.6E-05 41.7 10.2 41 354-394 196-241 (331)
153 PRK13932 stationary phase surv 87.2 8.8 0.00019 36.2 11.1 43 8-52 4-46 (257)
154 PLN03063 alpha,alpha-trehalose 86.9 4.2 9E-05 45.3 10.3 109 355-494 363-482 (797)
155 COG1703 ArgK Putative periplas 86.7 2.3 5E-05 40.6 6.9 42 8-49 50-91 (323)
156 cd03788 GT1_TPS Trehalose-6-Ph 86.1 3.1 6.7E-05 43.2 8.4 106 351-487 344-459 (460)
157 COG1618 Predicted nucleotide k 85.9 3.9 8.4E-05 35.4 7.2 105 8-129 4-109 (179)
158 TIGR00715 precor6x_red precorr 85.4 6.8 0.00015 37.0 9.6 34 10-48 1-34 (256)
159 COG3660 Predicted nucleoside-d 84.5 36 0.00079 32.0 16.6 97 289-392 164-271 (329)
160 COG0496 SurE Predicted acid ph 83.5 2.5 5.4E-05 39.4 5.6 112 11-150 2-126 (252)
161 PRK13933 stationary phase surv 83.3 14 0.00031 34.7 10.6 40 10-51 1-40 (253)
162 TIGR02919 accessory Sec system 81.3 47 0.001 34.2 14.5 79 348-448 328-411 (438)
163 PRK00346 surE 5'(3')-nucleotid 81.2 7 0.00015 36.7 7.7 41 10-52 1-41 (250)
164 PF02310 B12-binding: B12 bind 80.9 3.7 8.1E-05 33.5 5.3 45 10-54 1-45 (121)
165 PF02951 GSH-S_N: Prokaryotic 80.7 2.7 5.8E-05 34.6 4.2 38 10-47 1-41 (119)
166 cd02070 corrinoid_protein_B12- 80.7 15 0.00033 33.2 9.7 46 9-54 82-127 (201)
167 COG2185 Sbm Methylmalonyl-CoA 80.0 14 0.0003 31.3 8.2 44 7-50 10-53 (143)
168 PF02441 Flavoprotein: Flavopr 79.4 1.7 3.8E-05 36.2 2.8 45 10-55 1-45 (129)
169 PRK13935 stationary phase surv 79.3 24 0.00053 33.2 10.6 41 10-52 1-41 (253)
170 PRK12342 hypothetical protein; 76.7 15 0.00033 34.6 8.5 39 110-150 101-145 (254)
171 PRK08305 spoVFB dipicolinate s 76.1 4.4 9.5E-05 36.5 4.5 43 7-49 3-45 (196)
172 TIGR02398 gluc_glyc_Psyn gluco 76.1 69 0.0015 33.5 13.9 110 350-490 364-483 (487)
173 PRK14501 putative bifunctional 76.1 8.4 0.00018 42.6 7.7 116 350-493 344-466 (726)
174 PF04413 Glycos_transf_N: 3-De 76.0 10 0.00022 34.0 6.9 100 11-149 22-126 (186)
175 KOG1250 Threonine/serine dehyd 76.0 61 0.0013 32.4 12.4 61 370-448 248-316 (457)
176 TIGR00087 surE 5'/3'-nucleotid 75.6 21 0.00046 33.5 9.1 41 11-53 2-42 (244)
177 TIGR02370 pyl_corrinoid methyl 75.5 20 0.00044 32.3 8.8 48 8-55 83-130 (197)
178 COG0003 ArsA Predicted ATPase 74.9 44 0.00095 32.8 11.4 41 10-50 2-43 (322)
179 COG0438 RfaG Glycosyltransfera 74.7 78 0.0017 30.0 15.8 80 347-448 256-342 (381)
180 PF01975 SurE: Survival protei 74.0 5.5 0.00012 36.0 4.7 42 10-52 1-42 (196)
181 TIGR03713 acc_sec_asp1 accesso 73.5 8.2 0.00018 40.7 6.5 92 348-466 409-506 (519)
182 PF00551 Formyl_trans_N: Formy 73.5 32 0.0007 30.5 9.5 106 10-150 1-110 (181)
183 PF07429 Glyco_transf_56: 4-al 72.3 40 0.00087 33.1 10.2 82 348-447 245-332 (360)
184 cd01974 Nitrogenase_MoFe_beta 71.8 31 0.00066 35.5 10.2 37 108-149 367-403 (435)
185 PRK02797 4-alpha-L-fucosyltran 71.4 1E+02 0.0022 30.0 12.5 80 348-445 206-291 (322)
186 cd02071 MM_CoA_mut_B12_BD meth 70.9 50 0.0011 27.1 9.5 40 11-50 1-40 (122)
187 COG2910 Putative NADH-flavin r 69.3 6.6 0.00014 34.7 3.9 33 10-46 1-33 (211)
188 PF04127 DFP: DNA / pantothena 69.1 4.4 9.6E-05 36.2 2.9 38 9-46 3-52 (185)
189 smart00851 MGS MGS-like domain 68.9 27 0.00059 26.8 7.0 79 26-145 2-89 (90)
190 PF12146 Hydrolase_4: Putative 68.4 14 0.00029 27.9 5.0 36 9-44 15-50 (79)
191 PRK03359 putative electron tra 68.3 32 0.00069 32.5 8.6 40 109-150 103-148 (256)
192 COG4370 Uncharacterized protei 68.2 20 0.00043 34.4 6.9 84 355-460 302-387 (412)
193 PF00731 AIRC: AIR carboxylase 66.6 50 0.0011 28.3 8.6 139 289-468 2-148 (150)
194 cd00532 MGS-like MGS-like doma 66.5 33 0.00071 27.7 7.4 84 22-146 10-104 (112)
195 cd01980 Chlide_reductase_Y Chl 66.4 50 0.0011 33.7 10.3 33 112-149 344-376 (416)
196 PRK05973 replicative DNA helic 65.9 28 0.0006 32.5 7.6 45 11-55 66-110 (237)
197 COG0052 RpsB Ribosomal protein 65.0 42 0.00091 31.2 8.3 34 119-152 155-190 (252)
198 PRK06249 2-dehydropantoate 2-r 64.7 9.2 0.0002 37.4 4.5 38 5-47 1-38 (313)
199 PF02585 PIG-L: GlcNAc-PI de-N 64.2 57 0.0012 26.8 8.6 25 103-129 85-109 (128)
200 PF02571 CbiJ: Precorrin-6x re 63.4 23 0.00049 33.4 6.6 40 107-149 55-101 (249)
201 PHA02542 41 41 helicase; Provi 62.8 60 0.0013 33.8 10.1 42 12-53 193-234 (473)
202 TIGR02195 heptsyl_trn_II lipop 62.5 1.1E+02 0.0025 29.8 11.9 101 9-150 174-279 (334)
203 PRK05647 purN phosphoribosylgl 62.5 57 0.0012 29.5 8.8 86 10-129 2-89 (200)
204 PRK13931 stationary phase surv 62.1 21 0.00045 33.9 6.0 28 25-52 15-45 (261)
205 cd03793 GT1_Glycogen_synthase_ 61.9 28 0.0006 36.9 7.4 80 357-447 467-551 (590)
206 PF02142 MGS: MGS-like domain 61.8 6 0.00013 30.9 2.1 84 26-145 2-94 (95)
207 TIGR02015 BchY chlorophyllide 61.7 62 0.0013 33.1 9.9 31 11-46 287-317 (422)
208 PRK01077 cobyrinic acid a,c-di 61.6 91 0.002 32.2 11.3 35 11-45 5-40 (451)
209 PF05159 Capsule_synth: Capsul 60.9 32 0.00069 32.7 7.4 43 349-394 184-226 (269)
210 COG2120 Uncharacterized protei 60.9 60 0.0013 30.3 8.9 39 8-46 9-47 (237)
211 cd01424 MGS_CPS_II Methylglyox 60.8 54 0.0012 26.2 7.6 84 21-146 10-100 (110)
212 PF09314 DUF1972: Domain of un 60.5 96 0.0021 27.7 9.6 56 11-73 3-63 (185)
213 cd07038 TPP_PYR_PDC_IPDC_like 60.3 49 0.0011 28.7 7.8 28 367-394 60-93 (162)
214 TIGR01285 nifN nitrogenase mol 60.1 71 0.0015 32.8 10.1 88 9-148 311-398 (432)
215 PF06925 MGDG_synth: Monogalac 59.9 25 0.00054 30.7 6.0 44 104-149 75-124 (169)
216 KOG2836 Protein tyrosine phosp 59.8 53 0.0012 27.3 7.1 55 8-74 15-71 (173)
217 PF01075 Glyco_transf_9: Glyco 59.6 19 0.00041 33.6 5.4 99 286-392 104-208 (247)
218 PRK08057 cobalt-precorrin-6x r 59.2 59 0.0013 30.6 8.5 91 10-149 3-100 (248)
219 PRK05595 replicative DNA helic 58.8 92 0.002 32.1 10.7 42 12-53 204-246 (444)
220 TIGR00639 PurN phosphoribosylg 57.7 1.4E+02 0.0031 26.7 10.6 104 10-148 1-108 (190)
221 PRK06321 replicative DNA helic 57.4 1.3E+02 0.0028 31.3 11.5 42 12-53 229-271 (472)
222 COG2894 MinD Septum formation 57.0 51 0.0011 30.3 7.2 37 11-47 3-41 (272)
223 cd01423 MGS_CPS_I_III Methylgl 56.9 26 0.00057 28.4 5.2 87 22-146 11-106 (116)
224 cd01124 KaiC KaiC is a circadi 56.8 29 0.00064 30.5 6.0 44 12-55 2-45 (187)
225 PLN03064 alpha,alpha-trehalose 56.3 2.9E+02 0.0064 31.5 14.5 109 354-494 446-566 (934)
226 TIGR02852 spore_dpaB dipicolin 56.2 15 0.00033 32.8 3.9 38 11-48 2-39 (187)
227 TIGR00347 bioD dethiobiotin sy 55.8 84 0.0018 27.1 8.7 27 17-43 6-32 (166)
228 COG0801 FolK 7,8-dihydro-6-hyd 55.8 23 0.00051 30.6 4.8 34 289-322 3-36 (160)
229 PRK08506 replicative DNA helic 55.7 1.5E+02 0.0033 30.8 11.8 42 12-53 195-236 (472)
230 cd07039 TPP_PYR_POX Pyrimidine 54.6 1.1E+02 0.0024 26.6 9.0 27 367-393 64-96 (164)
231 PRK14098 glycogen synthase; Pr 53.9 22 0.00047 37.3 5.2 39 9-47 5-49 (489)
232 PRK09620 hypothetical protein; 53.8 23 0.0005 32.9 4.8 38 9-46 3-52 (229)
233 cd03466 Nitrogenase_NifN_2 Nit 53.8 1E+02 0.0022 31.7 10.0 36 108-148 362-397 (429)
234 PRK08760 replicative DNA helic 53.7 85 0.0018 32.7 9.5 42 12-53 232-274 (476)
235 PRK05636 replicative DNA helic 53.7 82 0.0018 33.1 9.3 41 12-52 268-309 (505)
236 cd02069 methionine_synthase_B1 53.5 26 0.00055 32.2 5.0 48 8-55 87-134 (213)
237 TIGR02655 circ_KaiC circadian 52.7 77 0.0017 33.1 9.1 45 11-55 265-309 (484)
238 cd07035 TPP_PYR_POX_like Pyrim 52.4 87 0.0019 26.6 8.1 27 368-394 61-93 (155)
239 PRK06732 phosphopantothenate-- 52.1 17 0.00036 33.8 3.6 36 11-46 2-49 (229)
240 cd00561 CobA_CobO_BtuR ATP:cor 52.0 1.6E+02 0.0035 25.6 10.8 99 11-130 4-105 (159)
241 COG1797 CobB Cobyrinic acid a, 51.8 48 0.001 33.6 6.8 32 12-43 3-35 (451)
242 PF03308 ArgK: ArgK protein; 51.5 1.2E+02 0.0026 28.7 9.0 41 8-48 28-68 (266)
243 PRK07313 phosphopantothenoylcy 51.4 18 0.00039 32.2 3.6 43 10-53 2-44 (182)
244 PRK06849 hypothetical protein; 51.0 31 0.00067 34.9 5.7 37 7-47 2-38 (389)
245 TIGR03446 mycothiol_Mca mycoth 50.8 1E+02 0.0022 29.7 8.8 21 105-127 108-128 (283)
246 PF01210 NAD_Gly3P_dh_N: NAD-d 49.7 12 0.00027 32.3 2.2 32 11-47 1-32 (157)
247 cd00861 ProRS_anticodon_short 49.7 51 0.0011 25.2 5.6 36 9-44 1-38 (94)
248 PTZ00445 p36-lilke protein; Pr 49.5 1.3E+02 0.0029 27.4 8.7 28 21-48 74-102 (219)
249 PF00982 Glyco_transf_20: Glyc 49.0 3.3E+02 0.0072 28.4 13.3 108 351-488 356-473 (474)
250 PRK09165 replicative DNA helic 48.5 1.8E+02 0.004 30.5 11.0 43 12-54 220-277 (497)
251 PRK13982 bifunctional SbtC-lik 48.2 23 0.00051 36.6 4.3 40 7-46 254-305 (475)
252 PRK06718 precorrin-2 dehydroge 48.1 1.1E+02 0.0024 27.7 8.3 146 287-469 11-165 (202)
253 TIGR01283 nifE nitrogenase mol 48.0 1.9E+02 0.0041 30.0 11.0 35 108-147 385-419 (456)
254 PF02374 ArsA_ATPase: Anion-tr 47.5 25 0.00054 34.2 4.2 41 11-51 2-43 (305)
255 cd01968 Nitrogenase_NifE_I Nit 47.4 1.9E+02 0.0041 29.4 10.8 34 109-147 347-380 (410)
256 cd00984 DnaB_C DnaB helicase C 47.4 2.3E+02 0.005 26.0 11.5 43 12-54 16-59 (242)
257 COG0859 RfaF ADP-heptose:LPS h 47.4 2.4E+02 0.0052 27.7 11.3 100 9-150 175-279 (334)
258 PLN02470 acetolactate synthase 47.3 53 0.0012 35.3 7.1 92 293-393 2-109 (585)
259 PLN02240 UDP-glucose 4-epimera 46.8 31 0.00067 34.1 4.9 34 7-44 3-36 (352)
260 PRK14478 nitrogenase molybdenu 46.6 90 0.002 32.6 8.4 32 110-146 385-416 (475)
261 COG1484 DnaC DNA replication p 46.5 25 0.00054 33.2 3.9 47 9-55 105-151 (254)
262 PF06506 PrpR_N: Propionate ca 46.3 36 0.00078 30.0 4.7 71 363-448 31-124 (176)
263 PRK12311 rpsB 30S ribosomal pr 46.3 1.8E+02 0.0039 28.6 9.7 34 119-152 151-186 (326)
264 PLN02948 phosphoribosylaminoim 46.2 3E+02 0.0066 29.5 12.4 37 7-48 20-56 (577)
265 cd01715 ETF_alpha The electron 46.0 1.7E+02 0.0038 25.3 9.0 44 105-150 70-116 (168)
266 TIGR00725 conserved hypothetic 45.9 59 0.0013 28.2 5.9 100 274-394 20-123 (159)
267 TIGR01425 SRP54_euk signal rec 45.7 1.2E+02 0.0025 31.2 8.8 41 10-50 101-141 (429)
268 PF00448 SRP54: SRP54-type pro 45.7 88 0.0019 28.2 7.2 60 11-71 3-62 (196)
269 KOG0853 Glycosyltransferase [C 45.2 16 0.00035 37.8 2.5 61 378-456 381-441 (495)
270 cd01121 Sms Sms (bacterial rad 44.3 2.4E+02 0.0052 28.3 10.7 41 12-52 85-125 (372)
271 PRK13789 phosphoribosylamine-- 44.2 85 0.0018 32.2 7.7 35 9-48 4-38 (426)
272 PF04464 Glyphos_transf: CDP-G 44.0 52 0.0011 32.8 6.1 114 347-481 251-365 (369)
273 TIGR00665 DnaB replicative DNA 44.0 2.9E+02 0.0062 28.3 11.6 42 12-53 198-240 (434)
274 TIGR01501 MthylAspMutase methy 43.9 63 0.0014 27.2 5.5 43 10-52 2-44 (134)
275 PF10083 DUF2321: Uncharacteri 43.7 47 0.001 28.4 4.6 74 392-489 78-151 (158)
276 PRK06029 3-octaprenyl-4-hydrox 43.3 30 0.00066 30.9 3.7 43 10-53 2-45 (185)
277 PRK05920 aromatic acid decarbo 42.5 31 0.00067 31.4 3.7 44 9-53 3-46 (204)
278 TIGR00379 cobB cobyrinic acid 42.1 3.2E+02 0.007 28.2 11.6 34 12-45 2-36 (449)
279 PRK10490 sensor protein KdpD; 42.0 28 0.0006 39.6 4.0 40 9-48 24-63 (895)
280 PRK10867 signal recognition pa 41.9 1.4E+02 0.0031 30.6 8.7 44 9-52 100-144 (433)
281 PRK11519 tyrosine kinase; Prov 41.8 65 0.0014 35.6 6.8 43 8-50 524-568 (719)
282 TIGR01470 cysG_Nterm siroheme 41.6 2.5E+02 0.0055 25.4 9.6 148 288-469 11-165 (205)
283 TIGR00460 fmt methionyl-tRNA f 41.5 2.8E+02 0.0061 27.0 10.5 32 10-46 1-32 (313)
284 TIGR03880 KaiC_arch_3 KaiC dom 41.2 2.7E+02 0.0058 25.3 10.0 45 11-55 18-62 (224)
285 PRK07773 replicative DNA helic 40.8 1.8E+02 0.004 33.0 10.3 43 12-54 220-263 (886)
286 KOG1387 Glycosyltransferase [C 40.4 3.8E+02 0.0083 26.6 19.1 61 93-156 126-187 (465)
287 PF09001 DUF1890: Domain of un 40.4 19 0.00042 30.1 1.8 35 19-53 9-43 (139)
288 PRK00784 cobyric acid synthase 40.4 3.6E+02 0.0079 28.2 11.8 35 11-45 4-39 (488)
289 cd02065 B12-binding_like B12 b 40.2 49 0.0011 26.8 4.4 39 12-50 2-40 (125)
290 COG1066 Sms Predicted ATP-depe 40.1 33 0.00072 34.5 3.7 41 12-53 96-136 (456)
291 PRK07206 hypothetical protein; 40.0 1.1E+02 0.0023 31.2 7.7 33 10-47 3-35 (416)
292 TIGR00959 ffh signal recogniti 39.2 2.6E+02 0.0056 28.7 10.1 43 10-52 100-143 (428)
293 TIGR02113 coaC_strep phosphopa 39.0 31 0.00068 30.5 3.1 42 11-53 2-43 (177)
294 KOG2825 Putative arsenite-tran 38.8 1.6E+02 0.0034 27.8 7.5 44 8-51 17-61 (323)
295 PRK10916 ADP-heptose:LPS hepto 38.8 1.5E+02 0.0033 29.2 8.4 104 10-150 181-289 (348)
296 PRK08322 acetolactate synthase 38.4 96 0.0021 32.9 7.3 27 367-393 64-96 (547)
297 PF07355 GRDB: Glycine/sarcosi 38.4 63 0.0014 31.8 5.2 44 103-148 65-118 (349)
298 TIGR03878 thermo_KaiC_2 KaiC d 38.3 3.5E+02 0.0075 25.5 11.7 39 11-49 38-76 (259)
299 PRK12475 thiamine/molybdopteri 38.3 2.6E+02 0.0056 27.7 9.8 34 8-46 23-57 (338)
300 COG0541 Ffh Signal recognition 38.1 1.7E+02 0.0037 29.8 8.3 48 9-56 100-147 (451)
301 PRK11823 DNA repair protein Ra 38.1 90 0.002 32.2 6.8 41 12-52 83-123 (446)
302 TIGR00421 ubiX_pad polyprenyl 38.0 32 0.00069 30.6 3.0 41 12-53 2-42 (181)
303 PF08323 Glyco_transf_5: Starc 37.9 26 0.00055 32.9 2.6 24 24-47 20-43 (245)
304 cd01122 GP4d_helicase GP4d_hel 37.7 24 0.00052 33.5 2.4 43 11-53 32-75 (271)
305 TIGR02699 archaeo_AfpA archaeo 37.4 38 0.00083 29.9 3.4 41 12-53 2-44 (174)
306 TIGR01861 ANFD nitrogenase iro 37.3 2.7E+02 0.0059 29.3 10.2 30 112-146 392-421 (513)
307 cd01425 RPS2 Ribosomal protein 37.2 3.1E+02 0.0067 24.6 10.5 33 119-151 126-160 (193)
308 PRK13604 luxD acyl transferase 37.0 65 0.0014 31.3 5.1 36 8-43 35-70 (307)
309 PRK06276 acetolactate synthase 36.9 1.1E+02 0.0024 32.8 7.6 27 367-393 64-96 (586)
310 TIGR02201 heptsyl_trn_III lipo 36.1 3.9E+02 0.0085 26.1 10.9 37 108-150 252-288 (344)
311 PRK14477 bifunctional nitrogen 35.7 3E+02 0.0064 31.5 10.8 35 109-148 380-414 (917)
312 PRK12921 2-dehydropantoate 2-r 35.6 51 0.0011 31.8 4.4 31 10-45 1-31 (305)
313 PRK05986 cob(I)alamin adenolsy 35.3 3.3E+02 0.0072 24.4 11.7 102 8-130 21-125 (191)
314 TIGR01007 eps_fam capsular exo 35.2 72 0.0016 28.7 5.0 40 9-48 16-57 (204)
315 COG0223 Fmt Methionyl-tRNA for 35.1 72 0.0016 31.0 5.1 36 9-49 1-36 (307)
316 PRK06027 purU formyltetrahydro 35.0 1.8E+02 0.0039 28.0 7.9 108 8-150 88-196 (286)
317 PRK06456 acetolactate synthase 34.8 1.1E+02 0.0024 32.7 7.1 27 367-393 69-101 (572)
318 TIGR02700 flavo_MJ0208 archaeo 34.7 50 0.0011 30.7 3.9 42 12-53 2-45 (234)
319 TIGR00521 coaBC_dfp phosphopan 34.7 46 0.001 33.6 3.9 45 9-54 3-47 (390)
320 PRK06067 flagellar accessory p 34.6 1.8E+02 0.0038 26.8 7.7 42 11-52 27-68 (234)
321 cd01141 TroA_d Periplasmic bin 34.6 60 0.0013 28.6 4.4 38 108-148 60-99 (186)
322 COG0041 PurE Phosphoribosylcar 34.3 3E+02 0.0066 23.7 9.9 144 289-472 4-154 (162)
323 PRK06270 homoserine dehydrogen 34.0 2.2E+02 0.0047 28.2 8.6 159 288-473 4-208 (341)
324 PRK02122 glucosamine-6-phospha 33.9 2.9E+02 0.0063 30.1 10.0 36 9-44 369-404 (652)
325 PRK04328 hypothetical protein; 33.9 4E+02 0.0086 24.9 11.8 44 11-54 25-68 (249)
326 PRK07525 sulfoacetaldehyde ace 33.8 1.8E+02 0.0038 31.3 8.5 28 366-393 68-101 (588)
327 PRK11199 tyrA bifunctional cho 33.7 2.8E+02 0.0062 27.8 9.4 33 9-46 98-131 (374)
328 COG1435 Tdk Thymidine kinase [ 33.5 2E+02 0.0043 25.9 7.2 36 13-48 8-43 (201)
329 PRK07236 hypothetical protein; 33.4 77 0.0017 31.8 5.4 38 1-46 1-38 (386)
330 PRK13236 nitrogenase reductase 33.3 81 0.0017 30.5 5.3 39 8-46 4-43 (296)
331 TIGR00640 acid_CoA_mut_C methy 33.2 2.9E+02 0.0062 23.1 10.3 39 9-47 2-40 (132)
332 PRK05632 phosphate acetyltrans 33.2 2.9E+02 0.0064 30.3 10.1 35 11-45 4-39 (684)
333 TIGR02237 recomb_radB DNA repa 33.2 3.5E+02 0.0077 24.1 9.3 36 12-47 15-50 (209)
334 PF10093 DUF2331: Uncharacteri 33.1 62 0.0013 32.3 4.4 91 296-390 188-286 (374)
335 PRK05579 bifunctional phosphop 33.0 56 0.0012 33.2 4.2 48 7-55 4-51 (399)
336 PF05728 UPF0227: Uncharacteri 32.8 78 0.0017 28.3 4.7 43 108-150 47-90 (187)
337 PRK09841 cryptic autophosphory 32.6 3.6E+02 0.0078 29.9 10.7 43 8-50 529-573 (726)
338 cd03789 GT1_LPS_heptosyltransf 32.6 3.1E+02 0.0068 25.8 9.3 88 23-150 139-226 (279)
339 cd02032 Bchl_like This family 32.6 72 0.0016 30.2 4.8 37 10-46 1-37 (267)
340 cd01976 Nitrogenase_MoFe_alpha 32.4 58 0.0012 33.4 4.3 36 108-148 359-394 (421)
341 TIGR01182 eda Entner-Doudoroff 32.4 3.9E+02 0.0084 24.3 10.3 27 120-146 80-106 (204)
342 PRK06719 precorrin-2 dehydroge 31.8 68 0.0015 27.7 4.0 34 8-46 12-45 (157)
343 PRK06522 2-dehydropantoate 2-r 31.8 55 0.0012 31.5 3.9 31 10-45 1-31 (304)
344 PRK12446 undecaprenyldiphospho 31.6 63 0.0014 32.1 4.3 96 289-392 4-120 (352)
345 CHL00072 chlL photochlorophyll 31.4 84 0.0018 30.3 5.0 38 10-47 1-38 (290)
346 cd02034 CooC The accessory pro 31.3 1.1E+02 0.0024 24.8 5.0 37 11-47 1-37 (116)
347 PRK14569 D-alanyl-alanine synt 31.3 91 0.002 30.1 5.3 37 8-44 2-42 (296)
348 KOG2941 Beta-1,4-mannosyltrans 31.2 5.4E+02 0.012 25.6 29.4 127 8-154 11-142 (444)
349 PTZ00318 NADH dehydrogenase-li 30.9 62 0.0013 33.1 4.3 39 5-48 6-44 (424)
350 PRK13234 nifH nitrogenase redu 30.8 86 0.0019 30.3 5.0 36 11-46 6-41 (295)
351 PF13450 NAD_binding_8: NAD(P) 30.7 60 0.0013 23.4 3.0 22 26-47 8-29 (68)
352 TIGR00416 sms DNA repair prote 30.6 1.3E+02 0.0027 31.3 6.4 41 12-52 97-137 (454)
353 COG4088 Predicted nucleotide k 30.6 58 0.0013 29.7 3.3 35 12-46 4-38 (261)
354 PRK12448 dihydroxy-acid dehydr 30.5 3.4E+02 0.0073 29.1 9.4 46 104-151 97-146 (615)
355 PRK07710 acetolactate synthase 30.4 1.6E+02 0.0034 31.5 7.4 27 367-393 79-111 (571)
356 TIGR00110 ilvD dihydroxy-acid 30.3 4.7E+02 0.01 27.7 10.3 46 104-151 75-124 (535)
357 PRK14092 2-amino-4-hydroxy-6-h 30.0 1.1E+02 0.0025 26.6 5.1 28 289-316 9-36 (163)
358 PRK10422 lipopolysaccharide co 29.7 1.1E+02 0.0025 30.2 5.9 37 108-150 254-290 (352)
359 COG2159 Predicted metal-depend 29.7 1.5E+02 0.0033 28.6 6.5 93 275-382 116-210 (293)
360 COG3349 Uncharacterized conser 29.6 55 0.0012 33.9 3.5 32 10-46 1-32 (485)
361 PRK06932 glycerate dehydrogena 29.5 2.1E+02 0.0045 28.0 7.4 101 287-444 148-249 (314)
362 PRK07454 short chain dehydroge 29.3 1.1E+02 0.0023 28.1 5.3 35 9-46 5-39 (241)
363 CHL00076 chlB photochlorophyll 29.2 74 0.0016 33.5 4.5 35 109-148 365-399 (513)
364 PRK02910 light-independent pro 29.2 82 0.0018 33.3 4.8 35 109-148 353-387 (519)
365 TIGR00173 menD 2-succinyl-5-en 29.2 2.5E+02 0.0054 28.8 8.3 27 367-393 64-96 (432)
366 PF00148 Oxidored_nitro: Nitro 29.1 2.5E+02 0.0054 28.3 8.3 96 9-148 271-366 (398)
367 TIGR01281 DPOR_bchL light-inde 29.1 90 0.002 29.5 4.8 35 10-44 1-35 (268)
368 PF01075 Glyco_transf_9: Glyco 29.1 1.4E+02 0.003 27.6 6.0 101 8-151 104-212 (247)
369 COG4394 Uncharacterized protei 29.0 69 0.0015 30.5 3.7 50 349-403 239-291 (370)
370 TIGR01918 various_sel_PB selen 28.9 1E+02 0.0022 31.3 5.1 44 103-148 61-114 (431)
371 TIGR01917 gly_red_sel_B glycin 28.9 1E+02 0.0022 31.3 5.0 44 103-148 61-114 (431)
372 PRK09739 hypothetical protein; 28.7 1.4E+02 0.0029 26.9 5.7 36 9-44 3-41 (199)
373 PF02702 KdpD: Osmosensitive K 28.7 92 0.002 28.2 4.3 40 9-48 5-44 (211)
374 cd01981 Pchlide_reductase_B Pc 28.7 81 0.0018 32.4 4.6 36 110-150 362-397 (430)
375 PRK07060 short chain dehydroge 28.6 1.2E+02 0.0025 27.8 5.4 42 1-46 1-42 (245)
376 TIGR01278 DPOR_BchB light-inde 28.5 82 0.0018 33.2 4.7 36 109-149 355-390 (511)
377 TIGR01286 nifK nitrogenase mol 28.4 83 0.0018 33.2 4.7 34 110-148 429-462 (515)
378 PRK15409 bifunctional glyoxyla 28.4 1.7E+02 0.0037 28.7 6.6 66 287-378 146-212 (323)
379 cd01421 IMPCH Inosine monophos 28.4 1.6E+02 0.0034 26.3 5.7 38 23-71 10-47 (187)
380 PRK13011 formyltetrahydrofolat 28.3 2.7E+02 0.0058 26.8 7.8 107 8-150 88-196 (286)
381 PRK06171 sorbitol-6-phosphate 28.3 1.1E+02 0.0025 28.5 5.4 42 1-46 1-42 (266)
382 PRK12827 short chain dehydroge 28.2 1.1E+02 0.0023 28.1 5.1 32 9-44 6-37 (249)
383 TIGR03877 thermo_KaiC_1 KaiC d 27.9 3.6E+02 0.0078 24.9 8.5 44 11-54 23-66 (237)
384 cd01965 Nitrogenase_MoFe_beta_ 27.8 88 0.0019 32.1 4.7 37 108-149 361-397 (428)
385 PRK01231 ppnK inorganic polyph 27.7 2.6E+02 0.0056 27.1 7.6 53 364-448 62-118 (295)
386 PRK05562 precorrin-2 dehydroge 27.7 3.7E+02 0.0079 24.8 8.2 150 280-468 20-179 (223)
387 PF05225 HTH_psq: helix-turn-h 27.6 65 0.0014 21.2 2.4 27 434-463 1-27 (45)
388 PRK14619 NAD(P)H-dependent gly 27.6 1.4E+02 0.0031 28.9 6.0 35 8-47 3-37 (308)
389 PLN00016 RNA-binding protein; 27.5 74 0.0016 31.9 4.1 36 9-46 52-89 (378)
390 PRK07231 fabG 3-ketoacyl-(acyl 27.5 1.1E+02 0.0025 28.0 5.2 35 8-46 4-38 (251)
391 PRK15469 ghrA bifunctional gly 27.4 3.7E+02 0.0079 26.2 8.7 66 288-380 138-204 (312)
392 PRK07313 phosphopantothenoylcy 27.4 4.4E+02 0.0095 23.4 10.0 60 386-447 113-179 (182)
393 PF01380 SIS: SIS domain SIS d 27.4 1.6E+02 0.0034 23.9 5.5 39 15-53 58-96 (131)
394 PRK05653 fabG 3-ketoacyl-(acyl 27.3 1.1E+02 0.0024 27.9 5.0 36 7-46 3-38 (246)
395 PLN02929 NADH kinase 27.3 71 0.0015 30.9 3.7 65 364-448 64-137 (301)
396 KOG0780 Signal recognition par 27.3 2.8E+02 0.006 28.0 7.5 43 11-53 103-145 (483)
397 COG2210 Peroxiredoxin family p 27.2 1.3E+02 0.0028 25.3 4.6 34 13-46 7-40 (137)
398 PF03853 YjeF_N: YjeF-related 27.1 1.2E+02 0.0027 26.4 4.9 36 8-44 24-59 (169)
399 PLN02695 GDP-D-mannose-3',5'-e 27.1 1E+02 0.0022 30.9 4.9 35 7-45 19-53 (370)
400 PRK07533 enoyl-(acyl carrier p 27.0 1.2E+02 0.0027 28.3 5.3 42 1-45 2-44 (258)
401 PRK08199 thiamine pyrophosphat 27.0 2E+02 0.0043 30.7 7.4 27 367-393 72-104 (557)
402 COG2179 Predicted hydrolase of 26.7 2.6E+02 0.0056 24.5 6.5 99 15-150 40-140 (175)
403 PRK01372 ddl D-alanine--D-alan 26.7 98 0.0021 29.8 4.7 38 9-46 4-45 (304)
404 PLN00198 anthocyanidin reducta 26.7 1.1E+02 0.0023 30.1 5.0 42 1-46 1-42 (338)
405 COG0240 GpsA Glycerol-3-phosph 26.6 89 0.0019 30.6 4.1 32 10-46 2-33 (329)
406 COG0503 Apt Adenine/guanine ph 26.5 1.4E+02 0.0031 26.4 5.2 36 109-146 44-81 (179)
407 COG1090 Predicted nucleoside-d 26.5 4E+02 0.0087 25.6 8.2 20 27-46 12-31 (297)
408 CHL00194 ycf39 Ycf39; Provisio 26.5 90 0.0019 30.3 4.4 31 11-45 2-32 (317)
409 PF03720 UDPG_MGDP_dh_C: UDP-g 26.5 77 0.0017 25.2 3.2 29 24-52 17-45 (106)
410 COG0300 DltE Short-chain dehyd 26.5 2.8E+02 0.006 26.4 7.3 57 9-72 6-62 (265)
411 PF12695 Abhydrolase_5: Alpha/ 26.4 1.3E+02 0.0027 24.7 4.8 35 12-46 1-35 (145)
412 PF02571 CbiJ: Precorrin-6x re 26.3 1.7E+02 0.0037 27.5 6.0 103 26-148 118-226 (249)
413 PRK06222 ferredoxin-NADP(+) re 26.2 1.3E+02 0.0028 28.8 5.3 38 10-49 99-136 (281)
414 PRK09302 circadian clock prote 26.2 1.7E+02 0.0036 30.9 6.5 45 11-55 275-319 (509)
415 PRK09072 short chain dehydroge 26.2 1.2E+02 0.0027 28.2 5.2 36 7-46 3-38 (263)
416 PRK14476 nitrogenase molybdenu 26.1 4.4E+02 0.0095 27.3 9.5 26 120-148 371-396 (455)
417 PF03721 UDPG_MGDP_dh_N: UDP-g 25.8 1E+02 0.0022 27.4 4.2 32 10-46 1-32 (185)
418 PRK08155 acetolactate synthase 25.7 1.3E+02 0.0028 32.2 5.7 91 294-393 4-109 (564)
419 COG0143 MetG Methionyl-tRNA sy 25.6 1.4E+02 0.0029 31.9 5.6 41 9-49 4-54 (558)
420 PRK11064 wecC UDP-N-acetyl-D-m 25.6 94 0.002 31.7 4.4 32 9-45 3-34 (415)
421 KOG0832 Mitochondrial/chloropl 25.4 1.7E+02 0.0036 27.0 5.3 116 18-152 89-207 (251)
422 PF02558 ApbA: Ketopantoate re 25.3 66 0.0014 27.2 2.9 21 27-47 11-31 (151)
423 PRK00039 ruvC Holliday junctio 25.3 1.8E+02 0.0039 25.3 5.5 46 103-150 46-106 (164)
424 cd01840 SGNH_hydrolase_yrhL_li 25.3 1.2E+02 0.0026 25.6 4.5 37 287-324 51-87 (150)
425 PRK04940 hypothetical protein; 25.1 1.7E+02 0.0038 25.9 5.4 31 120-150 60-91 (180)
426 COG0299 PurN Folate-dependent 25.0 4.5E+02 0.0097 23.7 7.8 102 10-146 1-106 (200)
427 TIGR00750 lao LAO/AO transport 25.0 4E+02 0.0086 25.7 8.5 41 9-49 34-74 (300)
428 PLN02778 3,5-epimerase/4-reduc 24.9 1.4E+02 0.003 28.8 5.3 32 8-43 8-39 (298)
429 PF04244 DPRP: Deoxyribodipyri 24.9 71 0.0015 29.5 3.1 25 22-46 47-71 (224)
430 COG3028 Uncharacterized protei 24.9 1.4E+02 0.0031 26.0 4.6 53 433-491 93-145 (187)
431 PF00070 Pyr_redox: Pyridine n 24.8 1.1E+02 0.0024 22.6 3.7 23 25-47 10-32 (80)
432 PF02826 2-Hacid_dh_C: D-isome 24.6 66 0.0014 28.3 2.8 106 287-444 37-143 (178)
433 cd00860 ThrRS_anticodon ThrRS 24.6 1.4E+02 0.0031 22.3 4.4 34 10-44 2-35 (91)
434 PRK05858 hypothetical protein; 24.5 2.7E+02 0.0059 29.5 7.9 26 368-393 69-100 (542)
435 TIGR00313 cobQ cobyric acid sy 24.5 8.2E+02 0.018 25.5 11.4 29 18-46 8-36 (475)
436 PF07015 VirC1: VirC1 protein; 24.4 1.8E+02 0.004 26.9 5.6 44 12-55 4-48 (231)
437 PF02776 TPP_enzyme_N: Thiamin 24.4 1.3E+02 0.0028 26.3 4.5 28 367-394 65-98 (172)
438 PRK03094 hypothetical protein; 24.3 69 0.0015 24.2 2.3 21 26-46 10-30 (80)
439 PRK11269 glyoxylate carboligas 24.3 2E+02 0.0043 31.0 6.8 27 367-393 69-101 (591)
440 PRK08673 3-deoxy-7-phosphohept 24.3 6.7E+02 0.014 24.8 9.8 32 289-326 179-210 (335)
441 cd01143 YvrC Periplasmic bindi 24.2 1.2E+02 0.0027 26.6 4.5 38 109-149 52-90 (195)
442 COG2099 CobK Precorrin-6x redu 23.9 1.4E+02 0.003 28.1 4.6 38 107-147 55-99 (257)
443 PF07991 IlvN: Acetohydroxy ac 23.8 93 0.002 27.1 3.3 35 9-48 4-38 (165)
444 PF13377 Peripla_BP_3: Peripla 23.8 3.8E+02 0.0083 22.3 7.5 18 30-47 1-19 (160)
445 COG1171 IlvA Threonine dehydra 23.8 7.3E+02 0.016 24.7 11.9 62 370-448 207-277 (347)
446 COG0451 WcaG Nucleoside-diphos 23.7 1.1E+02 0.0024 29.2 4.5 31 12-46 3-33 (314)
447 PRK12825 fabG 3-ketoacyl-(acyl 23.6 1.5E+02 0.0033 26.9 5.2 34 9-46 6-39 (249)
448 PRK12826 3-ketoacyl-(acyl-carr 23.6 1.7E+02 0.0036 26.8 5.5 33 10-46 7-39 (251)
449 PF00289 CPSase_L_chain: Carba 23.5 1.3E+02 0.0028 24.2 4.0 69 303-382 12-88 (110)
450 PF02844 GARS_N: Phosphoribosy 23.5 1.1E+02 0.0023 24.3 3.4 37 108-146 52-91 (100)
451 cd01983 Fer4_NifH The Fer4_Nif 23.5 1.8E+02 0.0039 21.6 4.8 33 12-44 2-34 (99)
452 PF13460 NAD_binding_10: NADH( 23.5 91 0.002 27.1 3.5 28 17-46 4-31 (183)
453 COG1154 Dxs Deoxyxylulose-5-ph 23.4 9.5E+02 0.021 25.8 11.0 133 259-446 472-622 (627)
454 PF14359 DUF4406: Domain of un 23.3 1.2E+02 0.0026 23.5 3.6 19 23-41 15-33 (92)
455 TIGR00853 pts-lac PTS system, 23.3 2.2E+02 0.0047 22.2 5.1 39 8-46 2-40 (95)
456 PRK06487 glycerate dehydrogena 23.3 3.1E+02 0.0067 26.8 7.4 100 287-444 149-249 (317)
457 TIGR01012 Sa_S2_E_A ribosomal 23.0 1.1E+02 0.0024 27.6 3.8 33 120-152 108-142 (196)
458 PF02780 Transketolase_C: Tran 23.0 1.5E+02 0.0032 24.2 4.4 36 9-46 9-44 (124)
459 PRK12828 short chain dehydroge 22.9 1.6E+02 0.0035 26.6 5.2 35 8-46 6-40 (239)
460 PRK12315 1-deoxy-D-xylulose-5- 22.8 8.4E+02 0.018 26.2 11.1 14 433-446 567-580 (581)
461 PRK06077 fabG 3-ketoacyl-(acyl 22.8 1.6E+02 0.0036 27.0 5.3 33 9-45 6-38 (252)
462 KOG3062 RNA polymerase II elon 22.8 1.5E+02 0.0033 27.4 4.6 29 11-39 3-31 (281)
463 PRK12829 short chain dehydroge 22.7 1.3E+02 0.0028 27.9 4.6 34 8-45 10-43 (264)
464 PRK10964 ADP-heptose:LPS hepto 22.6 1.3E+02 0.0027 29.4 4.6 36 109-150 246-281 (322)
465 COG0151 PurD Phosphoribosylami 22.6 2.3E+02 0.0049 28.8 6.2 32 10-46 1-32 (428)
466 TIGR01380 glut_syn glutathione 22.5 1.3E+02 0.0028 29.4 4.6 39 11-49 2-43 (312)
467 PRK09219 xanthine phosphoribos 22.5 1.7E+02 0.0037 26.2 4.9 42 105-148 37-80 (189)
468 PRK14106 murD UDP-N-acetylmura 22.4 1.1E+02 0.0023 31.6 4.2 36 7-47 3-38 (450)
469 TIGR00345 arsA arsenite-activa 22.4 4.3E+02 0.0094 25.3 8.1 24 27-50 3-26 (284)
470 PRK13869 plasmid-partitioning 22.3 1.4E+02 0.003 30.4 4.9 39 9-47 120-160 (405)
471 TIGR02114 coaB_strep phosphopa 22.3 84 0.0018 29.1 3.1 19 26-44 28-46 (227)
472 PRK08229 2-dehydropantoate 2-r 22.0 1E+02 0.0022 30.3 3.9 32 10-46 3-34 (341)
473 TIGR02853 spore_dpaA dipicolin 22.0 2E+02 0.0043 27.7 5.7 104 25-147 12-119 (287)
474 PRK08265 short chain dehydroge 22.0 1.6E+02 0.0036 27.4 5.1 32 11-45 7-38 (261)
475 KOG3125 Thymidine kinase [Nucl 21.9 6E+02 0.013 23.0 8.1 93 287-415 26-136 (234)
476 PRK07576 short chain dehydroge 21.9 2.2E+02 0.0047 26.6 6.0 41 1-45 1-41 (264)
477 TIGR00288 conserved hypothetic 21.9 1.9E+02 0.0042 25.1 4.9 27 18-47 113-139 (160)
478 TIGR02193 heptsyl_trn_I lipopo 21.8 1.4E+02 0.003 29.0 4.7 35 110-150 248-282 (319)
479 PRK11914 diacylglycerol kinase 21.8 1.7E+02 0.0037 28.3 5.3 80 289-393 12-95 (306)
480 PRK00923 sirohydrochlorin coba 21.8 4.4E+02 0.0095 21.4 7.6 28 288-315 3-30 (126)
481 PRK13982 bifunctional SbtC-lik 21.8 1.1E+02 0.0025 31.7 4.1 46 9-55 70-115 (475)
482 PRK06523 short chain dehydroge 21.8 1.9E+02 0.0042 26.7 5.6 36 7-46 7-42 (260)
483 cd02037 MRP-like MRP (Multiple 21.7 1.6E+02 0.0034 25.5 4.6 30 18-47 9-38 (169)
484 PRK10037 cell division protein 21.6 1.3E+02 0.0029 28.1 4.3 36 11-46 3-39 (250)
485 PRK04885 ppnK inorganic polyph 21.6 63 0.0014 30.7 2.1 27 365-393 36-68 (265)
486 PLN02989 cinnamyl-alcohol dehy 21.4 1.4E+02 0.0031 28.8 4.8 32 9-44 5-36 (325)
487 PRK13010 purU formyltetrahydro 21.4 7.4E+02 0.016 23.9 11.0 104 306-447 159-264 (289)
488 PF01695 IstB_IS21: IstB-like 21.3 1.8E+02 0.0039 25.7 4.8 40 9-48 47-86 (178)
489 TIGR03445 mycothiol_MshB 1D-my 21.3 4E+02 0.0087 25.6 7.5 20 105-126 110-129 (284)
490 PLN02650 dihydroflavonol-4-red 21.3 1.4E+02 0.0031 29.4 4.7 33 9-45 5-37 (351)
491 PF05014 Nuc_deoxyrib_tr: Nucl 21.2 74 0.0016 25.5 2.2 37 359-395 56-98 (113)
492 TIGR03453 partition_RepA plasm 21.1 1.5E+02 0.0032 30.0 4.8 39 9-47 103-143 (387)
493 PF01656 CbiA: CobQ/CobB/MinD/ 21.1 1.4E+02 0.0031 26.1 4.3 35 16-50 6-40 (195)
494 TIGR01279 DPOR_bchN light-inde 21.1 4.7E+02 0.01 26.6 8.5 36 8-48 273-308 (407)
495 TIGR03026 NDP-sugDHase nucleot 21.1 1.3E+02 0.0027 30.7 4.3 31 10-45 1-31 (411)
496 cd01147 HemV-2 Metal binding p 21.0 1.4E+02 0.003 27.8 4.4 38 109-149 66-106 (262)
497 PRK04761 ppnK inorganic polyph 20.9 68 0.0015 30.1 2.1 25 369-393 28-56 (246)
498 COG0569 TrkA K+ transport syst 20.9 1.2E+02 0.0026 28.0 3.8 31 11-46 2-32 (225)
499 PF03698 UPF0180: Uncharacteri 20.9 85 0.0018 23.7 2.2 22 26-47 10-31 (80)
500 PRK06718 precorrin-2 dehydroge 20.9 1.4E+02 0.003 27.1 4.1 34 8-46 9-42 (202)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=7.2e-69 Score=545.86 Aligned_cols=478 Identities=57% Similarity=1.024 Sum_probs=368.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMD 88 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~ 88 (497)
++||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++.+........+..++|+.+|++..++++|++.+...
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 58999999999999999999999999999999999999887666554321111122499999998876668887766544
Q ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhcc---
Q 010940 89 KLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISK--- 165 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~--- 165 (497)
..+.......+......+...+++++++...++++||+|.+++|+..+|+++|||.+.+++++++....++++....
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~ 167 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHL 167 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccc
Confidence 44433455556666677888899998864447899999999999999999999999999999998776543221111
Q ss_pred -C-CCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCCcE
Q 010940 166 -V-SKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKV 243 (497)
Q Consensus 166 -~-~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v 243 (497)
. ....+..+||+|....++..+++.++..... +..+...+.+....++++++|||.+||+.+++.++..+++++
T Consensus 168 ~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v 243 (491)
T PLN02534 168 SVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPD----LDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKV 243 (491)
T ss_pred cCCCCCceeecCCCCccccccHHHCChhhcCccc----HHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcE
Confidence 0 1223345788886555777778775433221 334444444333457799999999999999999988777899
Q ss_pred EEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEE
Q 010940 244 WCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVI 323 (497)
Q Consensus 244 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 323 (497)
+.|||+............+.. .....++++.+||++++++++|||||||......+++.+++.+|+.++++|||++
T Consensus 244 ~~VGPL~~~~~~~~~~~~~~~----~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~ 319 (491)
T PLN02534 244 WCVGPVSLCNKRNLDKFERGN----KASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVI 319 (491)
T ss_pred EEECcccccccccccccccCC----ccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 999999642211000000000 0111235699999999888999999999999999999999999999999999999
Q ss_pred eCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHH
Q 010940 324 RGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEK 403 (497)
Q Consensus 324 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~ 403 (497)
+.+........+.+|++|.++..+.|+++.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 320 r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~ 399 (491)
T PLN02534 320 KTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEK 399 (491)
T ss_pred ecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHH
Confidence 85321111112226889988888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcC-CchhHHHHHHHHHHHHHHHHHhccCCChHHHHHH
Q 010940 404 LAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR-GKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEM 482 (497)
Q Consensus 404 ~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~ 482 (497)
++++.+|+|+++......+|+..++.+...+.++|.++|+++|.+ +++++++|+||++|++.+++|+.+||||++++++
T Consensus 400 ~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~ 479 (491)
T PLN02534 400 LIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSI 479 (491)
T ss_pred HHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999999998654433444321101137999999999999973 4668899999999999999999999999999999
Q ss_pred HHHHHHhhhccC
Q 010940 483 LIEFVIQQTRGQ 494 (497)
Q Consensus 483 ~~~~~~~~~~~~ 494 (497)
||+++..+++-|
T Consensus 480 fv~~i~~~~~~~ 491 (491)
T PLN02534 480 LIQDVLKQQSLQ 491 (491)
T ss_pred HHHHHHHHhccC
Confidence 999998877654
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.3e-66 Score=530.45 Aligned_cols=462 Identities=32% Similarity=0.519 Sum_probs=357.8
Q ss_pred CCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCC
Q 010940 1 MASPLPAHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGL 80 (497)
Q Consensus 1 m~~~~~~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~ 80 (497)
|.+.....++||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++.+... ...+++++.+|++..+ ++
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~-~l 75 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHP-SI 75 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcC-CC
Confidence 555555568999999999999999999999999999999999999998876654321 1236889898887654 78
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhh
Q 010940 81 PQGCENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHK 160 (497)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 160 (497)
|++.+.....+ ......+......+...+.+++++...++++||+|.+.+|+..+|+++|||++.+++++++.+..+++
T Consensus 76 PdG~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 76 PSGVENVKDLP-PSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred CCCCcChhhcc-hhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 87766554333 22334455666777777888887744478999999999999999999999999999999999888777
Q ss_pred hhhccCC------CCcc---cccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHH
Q 010940 161 LEISKVS------KFES---FVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEY 231 (497)
Q Consensus 161 ~~~~~~~------~~~~---~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~ 231 (497)
+....+. .... ..+||++. ++.++++.+++....... +..+..+.......++++++|||++||+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 230 (477)
T PLN02863 155 LWREMPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDP-AWEFIKDSFRANIASWGLVVNSFTELEGIY 230 (477)
T ss_pred HhhcccccccccccccccccCCCCCCCC---cChHhCchhhhccCccch-HHHHHHHHHhhhccCCEEEEecHHHHHHHH
Confidence 6432211 0111 13577765 777888876653322111 222333333334567889999999999999
Q ss_pred HHHHHhhcC-CcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHH
Q 010940 232 VKEYKRVKG-DKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGL 310 (497)
Q Consensus 232 ~~~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~ 310 (497)
++.++..++ ++++.|||+............++. ..+..++++.+||+.++++++|||||||+...+.+++.+++.
T Consensus 231 ~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~----~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~ 306 (477)
T PLN02863 231 LEHLKKELGHDRVWAVGPILPLSGEKSGLMERGG----PSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALAS 306 (477)
T ss_pred HHHHHhhcCCCCeEEeCCCcccccccccccccCC----cccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHH
Confidence 999987765 689999999543210000000000 111235679999999988899999999999999999999999
Q ss_pred HHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCcee
Q 010940 311 GLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLV 390 (497)
Q Consensus 311 al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v 390 (497)
+|+.++++|||+++........... +|++|.++....|+++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 307 gL~~~~~~flw~~~~~~~~~~~~~~-lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l 385 (477)
T PLN02863 307 GLEKSGVHFIWCVKEPVNEESDYSN-IPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPML 385 (477)
T ss_pred HHHhCCCcEEEEECCCcccccchhh-CCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEE
Confidence 9999999999999854321101112 888998888889999999999999999999999999999999999999999999
Q ss_pred eccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q 010940 391 TCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAI 470 (497)
Q Consensus 391 ~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~ 470 (497)
++|+++||+.||+++++++|+|+++.... ++..+.+++.++|+++|.+ +++||+||+++++.+++|+
T Consensus 386 ~~P~~~DQ~~na~~v~~~~gvG~~~~~~~----------~~~~~~~~v~~~v~~~m~~---~~~~r~~a~~l~e~a~~Av 452 (477)
T PLN02863 386 AWPMAADQFVNASLLVDELKVAVRVCEGA----------DTVPDSDELARVFMESVSE---NQVERERAKELRRAALDAI 452 (477)
T ss_pred eCCccccchhhHHHHHHhhceeEEeccCC----------CCCcCHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHh
Confidence 99999999999999878899999985321 1136889999999999942 3899999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHhh
Q 010940 471 GVGGSSHRNIEMLIEFVIQQ 490 (497)
Q Consensus 471 ~~gg~~~~~~~~~~~~~~~~ 490 (497)
++||||++++++||+++...
T Consensus 453 ~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 453 KERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred ccCCcHHHHHHHHHHHHHHh
Confidence 99999999999999998643
No 3
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.1e-65 Score=524.94 Aligned_cols=465 Identities=44% Similarity=0.789 Sum_probs=351.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhh--hcCCCeeEEEeeCCCccCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAV--ESGLSIQLLQLEFPSVESGLPQGCE 85 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~--~~~~~i~f~~i~~~~~~~~~~~~~~ 85 (497)
+++||+++|+|++||++|++.||+.|+.|||+|||++++.+...+++...... .....+.+..++++..++++|.+.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 36799999999999999999999999999999999999998877665432211 1111356777777765557777654
Q ss_pred CCCCCC------ChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhh
Q 010940 86 NMDKLP------SRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTH 159 (497)
Q Consensus 86 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 159 (497)
.....+ ...+...+......+...+++++++. +||+||+|.+++|+..+|+++|||++.+++++++.....+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 443211 12334445556677888899998877 8999999999999999999999999999999888766544
Q ss_pred hhhhccC-----CCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHH
Q 010940 160 KLEISKV-----SKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKE 234 (497)
Q Consensus 160 ~~~~~~~-----~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~ 234 (497)
......+ .......+||+|..+.+...+++... . ...+..+.....+...+.+++++|||.+||+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~ 236 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDAD----E-ESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADF 236 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCC----C-chhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHH
Confidence 3322111 10112237888754444555555321 1 112344555555556778899999999999998888
Q ss_pred HHhhcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh
Q 010940 235 YKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEA 314 (497)
Q Consensus 235 ~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~ 314 (497)
++......+++|||+....+.......+.. ..+..+.++.+||+..+++++|||||||+...+.+++.+++.+|+.
T Consensus 237 ~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~----~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~ 312 (482)
T PLN03007 237 YKSFVAKRAWHIGPLSLYNRGFEEKAERGK----KANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEG 312 (482)
T ss_pred HHhccCCCEEEEccccccccccccccccCC----ccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHH
Confidence 877666689999998543221000000000 1122357799999999888999999999998889999999999999
Q ss_pred CCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccc
Q 010940 315 SSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPL 394 (497)
Q Consensus 315 ~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~ 394 (497)
++++|||+++......+...+ +|++|.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 313 ~~~~flw~~~~~~~~~~~~~~-lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~ 391 (482)
T PLN03007 313 SGQNFIWVVRKNENQGEKEEW-LPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPV 391 (482)
T ss_pred CCCCEEEEEecCCcccchhhc-CCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccc
Confidence 999999999864322111112 8899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHcceEEeccccccccc-cccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccC
Q 010940 395 FAEQFYNEKLAVQVLGIGVSVGIEAAVTWG-LEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVG 473 (497)
Q Consensus 395 ~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~-~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~g 473 (497)
++||+.||+++++.+++|+.+.... .. .. ...+++++|+++|+++|.| +++++||++|+++++.+++|+++|
T Consensus 392 ~~DQ~~na~~~~~~~~~G~~~~~~~---~~~~~---~~~~~~~~l~~av~~~m~~-~~~~~~r~~a~~~~~~a~~a~~~g 464 (482)
T PLN03007 392 GAEQFYNEKLVTQVLRTGVSVGAKK---LVKVK---GDFISREKVEKAVREVIVG-EEAEERRLRAKKLAEMAKAAVEEG 464 (482)
T ss_pred hhhhhhhHHHHHHhhcceeEecccc---ccccc---cCcccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999977677777764211 00 00 1138999999999999986 456799999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhh
Q 010940 474 GSSHRNIEMLIEFVIQQT 491 (497)
Q Consensus 474 g~~~~~~~~~~~~~~~~~ 491 (497)
|||..++++||+++.+.|
T Consensus 465 GsS~~~l~~~v~~~~~~~ 482 (482)
T PLN03007 465 GSSFNDLNKFMEELNSRK 482 (482)
T ss_pred CcHHHHHHHHHHHHHhcC
Confidence 999999999999987643
No 4
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-64 Score=511.14 Aligned_cols=434 Identities=25% Similarity=0.383 Sum_probs=339.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMD 88 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~ 88 (497)
++||+++|+|++||++|++.||+.|+.+||+|||++++.+...+.+.. ....++++..++++.. ++++++.+...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~-dgLp~g~~~~~ 78 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPV-NGLPAGAETTS 78 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCc-cCCCCCccccc
Confidence 689999999999999999999999999999999999998776665431 1122577877766532 36776654322
Q ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCCC
Q 010940 89 KLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVSK 168 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
... ......+......+...+++++++. ++|+||+| ++.|+..+|.++|||++.++++++.... +++... .
T Consensus 79 ~l~-~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~ 149 (442)
T PLN02208 79 DIP-ISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----G 149 (442)
T ss_pred chh-HHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----c
Confidence 221 1223344555678888899999887 89999999 5789999999999999999999998654 333211 0
Q ss_pred CcccccCCCCC-cccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCCcEEEec
Q 010940 169 FESFVVPGLPH-RIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKVWCIG 247 (497)
Q Consensus 169 ~~~~~~pgl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~vG 247 (497)
.....+||+|. .+.++..+++.+.. ....+..+..++.+...+++++++|||.+||+.+++++++.++++++.||
T Consensus 150 ~~~~~~pglp~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vG 225 (442)
T PLN02208 150 KLGVPPPGYPSSKVLFRENDAHALAT----LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTG 225 (442)
T ss_pred ccCCCCCCCCCcccccCHHHcCcccc----cchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEe
Confidence 11123578875 23355666665411 11123344444444556889999999999999999999888888999999
Q ss_pred cCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCC
Q 010940 248 PVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGE 327 (497)
Q Consensus 248 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 327 (497)
|++...+ .....++++.+||++.+++++|||||||+..++.+++.+++.+++..+.+++|+++.+.
T Consensus 226 pl~~~~~--------------~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~ 291 (442)
T PLN02208 226 PMFPEPD--------------TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPR 291 (442)
T ss_pred ecccCcC--------------CCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 9964321 11224678999999998889999999999998999999999998888899999988542
Q ss_pred CCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHH
Q 010940 328 RSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQ 407 (497)
Q Consensus 328 ~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~ 407 (497)
.......+ +|++|.++....|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++
T Consensus 292 ~~~~~~~~-lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~ 370 (442)
T PLN02208 292 GSSTVQEG-LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTE 370 (442)
T ss_pred cccchhhh-CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHH
Confidence 21111123 88999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 010940 408 VLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRG-KQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEF 486 (497)
Q Consensus 408 ~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~ 486 (497)
.+|+|+.++..+ +..++.++|+++|+++|+|+ +.++.+|++|+++++.+. ++|||++++++||++
T Consensus 371 ~~g~gv~~~~~~----------~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~ 436 (442)
T PLN02208 371 EFEVSVEVSREK----------TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEE 436 (442)
T ss_pred HhceeEEecccc----------CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHH
Confidence 799999997532 11389999999999999875 467889999999999973 378999999999999
Q ss_pred HHh
Q 010940 487 VIQ 489 (497)
Q Consensus 487 ~~~ 489 (497)
+.+
T Consensus 437 l~~ 439 (442)
T PLN02208 437 LQE 439 (442)
T ss_pred HHH
Confidence 854
No 5
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1e-63 Score=501.72 Aligned_cols=443 Identities=25% Similarity=0.395 Sum_probs=341.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
.++||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+.+. . ....++.+..++++.. +++|++.+.+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~--~~~~~~~v~~~~~p~~-~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--N--LFPHNIVFRSVTVPHV-DGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--c--cCCCCceEEEEECCCc-CCCCCccccc
Confidence 479999999999999999999999999999999999999876655432 0 0111334444444432 3777765554
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCC
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVS 167 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
.... ......+...++.+...+++++++. ++|+||+|. .+|+..+|+++|||.+.+++++++.+..+++..
T Consensus 79 ~~~~-~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~----- 149 (453)
T PLN02764 79 SEIP-VTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPG----- 149 (453)
T ss_pred ccCC-hhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhccc-----
Confidence 4443 2333445566677788899999887 889999995 899999999999999999999998877665311
Q ss_pred CCcccccCCCCCc-ccccccccCcccCCCC-CcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCCcEEE
Q 010940 168 KFESFVVPGLPHR-IELIKAQLPEALNPAG-SHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKVWC 245 (497)
Q Consensus 168 ~~~~~~~pgl~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~ 245 (497)
......+||+|.+ +.++.++++.+..... .....+..+..++.....+++++++|||.+||+.++++++...+++++.
T Consensus 150 ~~~~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~ 229 (453)
T PLN02764 150 GELGVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLL 229 (453)
T ss_pred ccCCCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEE
Confidence 1111234788742 1244555555422111 1111233455555445577889999999999999999997755578999
Q ss_pred eccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeC
Q 010940 246 IGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRG 325 (497)
Q Consensus 246 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 325 (497)
|||+..... .....++++.+|||+++++++|||||||+...+.+++.++..+|+..+.+|+|+++.
T Consensus 230 VGPL~~~~~--------------~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 230 TGPVFPEPD--------------KTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred eccCccCcc--------------ccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 999953211 001124679999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHH
Q 010940 326 GERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLA 405 (497)
Q Consensus 326 ~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~ 405 (497)
.........+ +|++|.++....++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++
T Consensus 296 ~~~~~~~~~~-lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l 374 (453)
T PLN02764 296 PRGSSTIQEA-LPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLL 374 (453)
T ss_pred CCCCcchhhh-CCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHH
Confidence 3221111223 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 010940 406 VQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRG-KQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLI 484 (497)
Q Consensus 406 ~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~ 484 (497)
++.+|+|+.+..++ ...++.++|+++|+++|+|+ +.+.++|++++++++.++ +||||++++++||
T Consensus 375 ~~~~g~gv~~~~~~----------~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv 440 (453)
T PLN02764 375 SDELKVSVEVAREE----------TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFI 440 (453)
T ss_pred HHHhceEEEecccc----------CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHH
Confidence 77799999875421 01289999999999999874 567889999999999984 4899999999999
Q ss_pred HHHHhhhcc
Q 010940 485 EFVIQQTRG 493 (497)
Q Consensus 485 ~~~~~~~~~ 493 (497)
+++.+...+
T Consensus 441 ~~~~~~~~~ 449 (453)
T PLN02764 441 ESLQDLVSG 449 (453)
T ss_pred HHHHHhccc
Confidence 999876554
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=5.5e-64 Score=508.08 Aligned_cols=435 Identities=28% Similarity=0.444 Sum_probs=338.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLA-EHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCEN 86 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~ 86 (497)
.++||+++|+|++||++|++.||+.|+ .+|++|||++++.+..++.+... ...++++..+|++..+ ++++...
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~-glp~~~~- 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDIS-GLVDPSA- 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCcccc-CCCCCCc-
Confidence 467999999999999999999999998 68999999999987655433211 1126899999876543 5542110
Q ss_pred CCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhh-cc
Q 010940 87 MDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEI-SK 165 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~-~~ 165 (497)
.....+......+...+++++++...+|++||+|.+.+|+..+|+++|||++.+++++++.+..+.+... ..
T Consensus 78 -------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 150 (481)
T PLN02992 78 -------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDK 150 (481)
T ss_pred -------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcc
Confidence 1112233344566677888887644478999999999999999999999999999999988765554421 11
Q ss_pred C-C-----CCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhh-
Q 010940 166 V-S-----KFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRV- 238 (497)
Q Consensus 166 ~-~-----~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~- 238 (497)
. . +..+..+||++. ++..+++..+..... ..+ ..+.+......+++++++|||.+||+.++++++..
T Consensus 151 ~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~--~~~-~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~ 224 (481)
T PLN02992 151 DIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVPDE--PVY-RDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPK 224 (481)
T ss_pred ccccccccCCCCcccCCCCc---cCHHHhhHhhcCCCc--HHH-HHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcc
Confidence 1 0 112334777775 566677753322211 112 23333344557789999999999999999988652
Q ss_pred -c----CCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHH
Q 010940 239 -K----GDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLE 313 (497)
Q Consensus 239 -~----~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~ 313 (497)
+ .++++.|||+..... . ...++++.+||++++++++|||||||+..++.+++.+++.+|+
T Consensus 225 ~~~~~~~~~v~~VGPl~~~~~--------------~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~ 289 (481)
T PLN02992 225 LLGRVARVPVYPIGPLCRPIQ--------------S-SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLE 289 (481)
T ss_pred ccccccCCceEEecCccCCcC--------------C-CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHH
Confidence 1 357999999953211 1 1135679999999988899999999999999999999999999
Q ss_pred hCCCCEEEEEeCCCCC---------------CCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchh
Q 010940 314 ASSQPFIWVIRGGERS---------------QGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNS 378 (497)
Q Consensus 314 ~~~~~~i~~~~~~~~~---------------~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt 378 (497)
.++++|||++++..+. .....+ +|++|.++....|+++.+|+||.+||+|+++++|||||||||
T Consensus 290 ~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS 368 (481)
T PLN02992 290 MSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEY-LPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSS 368 (481)
T ss_pred HcCCCEEEEEeCCcccccccccccCcccccccchhhh-CCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhH
Confidence 9999999999743110 001123 889999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHH
Q 010940 379 TLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKR 458 (497)
Q Consensus 379 ~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~ 458 (497)
+.||+++|||||++|+++||+.||+++++++|+|+.++..+ +.++.++|.++|+++|.| ++++++|++
T Consensus 369 ~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~-----------~~~~~~~l~~av~~vm~~-~~g~~~r~~ 436 (481)
T PLN02992 369 TLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPK-----------EVISRSKIEALVRKVMVE-EEGEEMRRK 436 (481)
T ss_pred HHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCC-----------CcccHHHHHHHHHHHhcC-CchHHHHHH
Confidence 99999999999999999999999999976799999997521 138999999999999986 567899999
Q ss_pred HHHHHHHHHHHhc--cCCChHHHHHHHHHHHHh
Q 010940 459 ARQLGEIANRAIG--VGGSSHRNIEMLIEFVIQ 489 (497)
Q Consensus 459 a~~~~~~~~~a~~--~gg~~~~~~~~~~~~~~~ 489 (497)
|+++++.+++|+. +||||++++++||+++.+
T Consensus 437 a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 437 VKKLRDTAEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 9999999999994 699999999999998754
No 7
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.7e-63 Score=506.86 Aligned_cols=445 Identities=27% Similarity=0.454 Sum_probs=340.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCC----CeEEEEeCCCCcc----hhhhhHhhhhhcCCCeeEEEeeCCCccC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHG----IKVTIVTTPLNTT----RFNITIKRAVESGLSIQLLQLEFPSVES 78 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rG----H~Vt~~~~~~~~~----~~~~~~~~~~~~~~~i~f~~i~~~~~~~ 78 (497)
|.+.||+++|+|++||++|++.||+.|+.+| +.|||++++.+.. .+............+++|+.+|++.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE--- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC---
Confidence 3477999999999999999999999999997 7999999886532 3333221111112258999988542
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhh
Q 010940 79 GLPQGCENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCT 158 (497)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 158 (497)
++++.+ ... ..+......+...+++++++...++++||+|.+.+|+..+|+++|||++.+++++++.+..+
T Consensus 78 -~p~~~e------~~~--~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~ 148 (480)
T PLN00164 78 -PPTDAA------GVE--EFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALM 148 (480)
T ss_pred -CCCccc------cHH--HHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 222211 111 12222345666778888776533569999999999999999999999999999999988877
Q ss_pred hhhhhcc-C--C--C--CcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHH
Q 010940 159 HKLEISK-V--S--K--FESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEY 231 (497)
Q Consensus 159 ~~~~~~~-~--~--~--~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~ 231 (497)
++..... . . + ..+..+||++. ++..+++.+...... ..+..+ ....+...+++++++|||++||+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~~--~~~~~~-~~~~~~~~~~~~vlvNTf~eLE~~~ 222 (480)
T PLN00164 149 LRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKKS--PNYAWF-VYHGRRFMEAAGIIVNTAAELEPGV 222 (480)
T ss_pred hhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCCc--HHHHHH-HHHHHhhhhcCEEEEechHHhhHHH
Confidence 7653211 0 0 0 01224788875 677888876543221 112222 2233445778999999999999999
Q ss_pred HHHHHhhc------CCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhH
Q 010940 232 VKEYKRVK------GDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQL 305 (497)
Q Consensus 232 ~~~~~~~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~ 305 (497)
++.++... .++++.|||+....... .....++++.+||++++++++|||||||+...+.+++
T Consensus 223 ~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~------------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~ 290 (480)
T PLN00164 223 LAAIADGRCTPGRPAPTVYPIGPVISLAFTP------------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQV 290 (480)
T ss_pred HHHHHhccccccCCCCceEEeCCCccccccC------------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHH
Confidence 99987642 25899999996322110 1122356799999999888999999999988999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCC-------CCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchh
Q 010940 306 LELGLGLEASSQPFIWVIRGGERS-------QGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNS 378 (497)
Q Consensus 306 ~~~~~al~~~~~~~i~~~~~~~~~-------~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt 378 (497)
.+++.+|+.++++|||+++..... .....+ +|++|.++....++++.+|+||.+||+|+++++|||||||||
T Consensus 291 ~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS 369 (480)
T PLN00164 291 REIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDEL-LPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNS 369 (480)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcccccccccccchhhh-CChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccch
Confidence 999999999999999999853210 111223 788999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCc-hhHHHHH
Q 010940 379 TLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGK-QGEKRRK 457 (497)
Q Consensus 379 ~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~~~~ 457 (497)
++||+++|||||++|+++||+.||+++++++|+|+.+...+ .. +..+++++|.++|+++|.|++ ++..+|+
T Consensus 370 ~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~-----~~---~~~~~~e~l~~av~~vm~~~~~~~~~~r~ 441 (480)
T PLN00164 370 VLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDR-----KR---DNFVEAAELERAVRSLMGGGEEEGRKARE 441 (480)
T ss_pred HHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEecccc-----cc---CCcCcHHHHHHHHHHHhcCCchhHHHHHH
Confidence 99999999999999999999999998878799999986421 00 013789999999999998765 4889999
Q ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHhh
Q 010940 458 RARQLGEIANRAIGVGGSSHRNIEMLIEFVIQQ 490 (497)
Q Consensus 458 ~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~~~~ 490 (497)
+|+++++.+++|+++||||++++++||+++...
T Consensus 442 ~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 442 KAAEMKAACRKAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998654
No 8
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.4e-63 Score=500.59 Aligned_cols=429 Identities=27% Similarity=0.464 Sum_probs=326.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
.+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+.... . ....+++|..+| +++|++...
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~-----~~~~~i~~~~ip-----~glp~~~~~- 72 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S-----DDFTDFQFVTIP-----ESLPESDFK- 72 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c-----cCCCCeEEEeCC-----CCCCccccc-
Confidence 468999999999999999999999999999999999999775311 1 111268888886 366653211
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhc----CCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhh
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKL----HPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEI 163 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 163 (497)
...... .+......+...+++++++. ..++++||+|.+.+|+..+|+++|||.+.+++++++.+..++++..
T Consensus 73 -~~~~~~---~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~ 148 (451)
T PLN02410 73 -NLGPIE---FLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDK 148 (451)
T ss_pred -ccCHHH---HHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHH
Confidence 111111 12122234445556555542 2467999999999999999999999999999999998776554311
Q ss_pred c------cC--C--CCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHH
Q 010940 164 S------KV--S--KFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVK 233 (497)
Q Consensus 164 ~------~~--~--~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~ 233 (497)
. .+ . ......+||++. ++..+++.+..... . .+..+..... ...+++++++|||++||+.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~--~-~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~ 221 (451)
T PLN02410 149 LYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWASL--E-SIMELYRNTV-DKRTASSVIINTASCLESSSLS 221 (451)
T ss_pred HHhccCCCCccccccCccccCCCCCC---CChHHCcchhcCCc--H-HHHHHHHHHh-hcccCCEEEEeChHHhhHHHHH
Confidence 1 01 0 112234777765 55566665432111 1 1222222222 2467889999999999999999
Q ss_pred HHHhhcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHH
Q 010940 234 EYKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLE 313 (497)
Q Consensus 234 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~ 313 (497)
+++...++++++|||++...+.. . ..+....++.+||++++++++|||||||+...+.+++.+++.+|+
T Consensus 222 ~l~~~~~~~v~~vGpl~~~~~~~--~---------~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe 290 (451)
T PLN02410 222 RLQQQLQIPVYPIGPLHLVASAP--T---------SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLD 290 (451)
T ss_pred HHHhccCCCEEEecccccccCCC--c---------cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHH
Confidence 99887778999999996432110 0 111223568899999988899999999999999999999999999
Q ss_pred hCCCCEEEEEeCCCCC-CCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeec
Q 010940 314 ASSQPFIWVIRGGERS-QGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTC 392 (497)
Q Consensus 314 ~~~~~~i~~~~~~~~~-~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~i 392 (497)
.++++|||+++.+... .+.... +|++|.++.. +|..+.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 291 ~s~~~FlWv~r~~~~~~~~~~~~-lp~~f~er~~-~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~ 368 (451)
T PLN02410 291 SSNQQFLWVIRPGSVRGSEWIES-LPKEFSKIIS-GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICK 368 (451)
T ss_pred hcCCCeEEEEccCcccccchhhc-CChhHHHhcc-CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEec
Confidence 9999999999853211 010011 7899988876 556777999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcc
Q 010940 393 PLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGV 472 (497)
Q Consensus 393 P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~ 472 (497)
|+++||+.||+++++.+|+|+.+. .. +++++|+++|+++|.|++ +++||++|+++++.+++|+++
T Consensus 369 P~~~DQ~~na~~~~~~~~~G~~~~-~~-------------~~~~~v~~av~~lm~~~~-~~~~r~~a~~l~~~~~~a~~~ 433 (451)
T PLN02410 369 PFSSDQKVNARYLECVWKIGIQVE-GD-------------LDRGAVERAVKRLMVEEE-GEEMRKRAISLKEQLRASVIS 433 (451)
T ss_pred cccccCHHHHHHHHHHhCeeEEeC-Cc-------------ccHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999987679999996 33 899999999999998644 789999999999999999999
Q ss_pred CCChHHHHHHHHHHHH
Q 010940 473 GGSSHRNIEMLIEFVI 488 (497)
Q Consensus 473 gg~~~~~~~~~~~~~~ 488 (497)
||||++++++||+.+.
T Consensus 434 gGsS~~~l~~fv~~~~ 449 (451)
T PLN02410 434 GGSSHNSLEEFVHFMR 449 (451)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999875
No 9
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.2e-63 Score=499.86 Aligned_cols=439 Identities=27% Similarity=0.476 Sum_probs=333.7
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCC
Q 010940 5 LPAHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGC 84 (497)
Q Consensus 5 ~~~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~ 84 (497)
|++++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ...+++|+.+| +++|++.
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~ 69 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGG 69 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCcc
Confidence 346678999999999999999999999999999999999999876544321 12358999886 3677632
Q ss_pred -CCCCCCCChhHHHHHHHHH-HHhhHHHHHHHhhcC--CCC-cEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhh
Q 010940 85 -ENMDKLPSRDLIKNFFHAA-SMLKQPFEQLFDKLH--PRP-SCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTH 159 (497)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~--~~p-DlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 159 (497)
+... .. . .++... ..+...+++++++.. .+| |+||+|.+.+|+..+|+++|||.+.+++++++....++
T Consensus 70 ~~~~~---~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~ 143 (449)
T PLN02173 70 FSSAG---SV--P-EYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINY 143 (449)
T ss_pred ccccc---CH--H-HHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHH
Confidence 2211 11 1 233333 355666777776531 244 99999999999999999999999999998888765544
Q ss_pred hhhhccCCCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhc
Q 010940 160 KLEISKVSKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVK 239 (497)
Q Consensus 160 ~~~~~~~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~ 239 (497)
+.... .......+||+|. ++..+++.++.........+..+. +......+++++++|||++||+.+++.++..
T Consensus 144 ~~~~~--~~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~- 216 (449)
T PLN02173 144 LSYIN--NGSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVL-QQFTNFDKADFVLVNSFHDLDLHENELLSKV- 216 (449)
T ss_pred hHHhc--cCCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHH-HHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-
Confidence 32111 1113345788876 677888887653222212222233 3334457789999999999999999888653
Q ss_pred CCcEEEeccCcCCCccchhh-hhhccCCCCCCC--cCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCC
Q 010940 240 GDKVWCIGPVSACNKLNIDK-AERCRGENGSTV--DDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASS 316 (497)
Q Consensus 240 ~~~v~~vGpl~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~ 316 (497)
++++.|||+.......... ..+.. .+..+ ..++++.+||+.++++++|||||||+...+.+++.+++.+| .+
T Consensus 217 -~~v~~VGPl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~ 291 (449)
T PLN02173 217 -CPVLTIGPTVPSMYLDQQIKSDNDY--DLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SN 291 (449)
T ss_pred -CCeeEEcccCchhhccccccccccc--cccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cC
Confidence 4799999995321100000 00000 00111 22456999999998889999999999999999999999999 67
Q ss_pred CCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccc
Q 010940 317 QPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFA 396 (497)
Q Consensus 317 ~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~ 396 (497)
.+|+|++....... +|++|.++...+|+++.+|+||.+||+|+++++|||||||||++||+.+|||||++|+++
T Consensus 292 ~~flWvvr~~~~~~------lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~ 365 (449)
T PLN02173 292 FSYLWVVRASEESK------LPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWT 365 (449)
T ss_pred CCEEEEEeccchhc------ccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchh
Confidence 88999998543221 788898888778999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCCh
Q 010940 397 EQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSS 476 (497)
Q Consensus 397 DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~ 476 (497)
||+.||+++++.+|+|+.+...+ .+ ..++.++|+++|+++|+| ++++++|++|+++++++++|+++||||
T Consensus 366 DQ~~Na~~v~~~~g~Gv~v~~~~------~~---~~~~~e~v~~av~~vm~~-~~~~~~r~~a~~~~~~a~~Av~~gGSS 435 (449)
T PLN02173 366 DQPMNAKYIQDVWKVGVRVKAEK------ES---GIAKREEIEFSIKEVMEG-EKSKEMKENAGKWRDLAVKSLSEGGST 435 (449)
T ss_pred cchHHHHHHHHHhCceEEEeecc------cC---CcccHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 99999999988779999986532 00 126899999999999986 556899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 010940 477 HRNIEMLIEFVI 488 (497)
Q Consensus 477 ~~~~~~~~~~~~ 488 (497)
++++++||+++.
T Consensus 436 ~~~l~~~v~~~~ 447 (449)
T PLN02173 436 DININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHHhc
Confidence 999999999874
No 10
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4e-63 Score=500.83 Aligned_cols=435 Identities=26% Similarity=0.411 Sum_probs=334.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMD 88 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~ 88 (497)
++||+++|+|++||++|++.||+.|+.+|++|||++++.+...++... ....+++|..++++..+ ++|++.+...
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~d-GLP~g~e~~~ 78 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPVD-GLPFGAETAS 78 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCcC-CCCCcccccc
Confidence 689999999999999999999999999999999999998876665431 11225888777766433 7777654333
Q ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCCC
Q 010940 89 KLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVSK 168 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
.... .....+......+...++++++.. +||+||+|. ++|+..+|+++|||++.+++++++....+++.. .
T Consensus 79 ~l~~-~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~----~- 149 (446)
T PLN00414 79 DLPN-STKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR----A- 149 (446)
T ss_pred cchh-hHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH----h-
Confidence 3221 223345556677788888888776 899999995 799999999999999999999998887766521 0
Q ss_pred CcccccCCCCC-cccccccc--cCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCCcEEE
Q 010940 169 FESFVVPGLPH-RIELIKAQ--LPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKVWC 245 (497)
Q Consensus 169 ~~~~~~pgl~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~ 245 (497)
.....+||+|. .+.++..+ ++.++.. ......+..+...+++++++|||.+||+.+++.++..++++++.
T Consensus 150 ~~~~~~pg~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~ 222 (446)
T PLN00414 150 ELGFPPPDYPLSKVALRGHDANVCSLFAN-------SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLL 222 (446)
T ss_pred hcCCCCCCCCCCcCcCchhhcccchhhcc-------cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEE
Confidence 00123467664 11112122 2222211 01223333345567899999999999999999998766678999
Q ss_pred eccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeC
Q 010940 246 IGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRG 325 (497)
Q Consensus 246 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 325 (497)
|||+..... . . .....++++.+|||++++++||||||||....+.+++.++..+|+.++.+|+|++..
T Consensus 223 VGPl~~~~~-~-~----------~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~ 290 (446)
T PLN00414 223 TGPMLPEPQ-N-K----------SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMP 290 (446)
T ss_pred EcccCCCcc-c-c----------cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 999953221 0 0 001124568899999999999999999999999999999999999999999999986
Q ss_pred CCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHH
Q 010940 326 GERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLA 405 (497)
Q Consensus 326 ~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~ 405 (497)
.........+ +|++|.++....++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++
T Consensus 291 ~~~~~~~~~~-lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~ 369 (446)
T PLN00414 291 PKGSSTVQEA-LPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLL 369 (446)
T ss_pred CCCcccchhh-CChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHH
Confidence 4221111123 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 010940 406 VQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRG-KQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLI 484 (497)
Q Consensus 406 ~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~ 484 (497)
++++|+|+.+...+ ++.+++++|+++|+++|+|+ +.++.+|++|+++++.+. ++||++ ..+++||
T Consensus 370 ~~~~g~g~~~~~~~----------~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v 435 (446)
T PLN00414 370 TEELEVSVKVQRED----------SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFV 435 (446)
T ss_pred HHHhCeEEEecccc----------CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHH
Confidence 87799999996431 01389999999999999864 457789999999999975 458833 2489999
Q ss_pred HHHHhhh
Q 010940 485 EFVIQQT 491 (497)
Q Consensus 485 ~~~~~~~ 491 (497)
+++.+.+
T Consensus 436 ~~~~~~~ 442 (446)
T PLN00414 436 EALENEV 442 (446)
T ss_pred HHHHHhc
Confidence 9986544
No 11
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6.8e-63 Score=497.21 Aligned_cols=439 Identities=28% Similarity=0.451 Sum_probs=339.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCCCcchhh--hhHhhhhhcCCCeeEEEeeCCCccCCC-CC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEH-GIKVTIVTTPLNTTRFN--ITIKRAVESGLSIQLLQLEFPSVESGL-PQ 82 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~--~~~~~~~~~~~~i~f~~i~~~~~~~~~-~~ 82 (497)
|+++||+++|+|++||++|++.||+.|+.+ |..|||++++.+...+. ...... ....++++..+|++..+ ++ +.
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~~-~l~~~ 78 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAA-AARTTCQITEIPSVDVD-NLVEP 78 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccc-cCCCceEEEECCCCccc-cCCCC
Confidence 457799999999999999999999999987 99999999887654331 111110 01125999999865432 33 11
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCC-eEEEccchHHHHHhhhhh
Q 010940 83 GCENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIP-TILFDGMGCFACCCTHKL 161 (497)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~ 161 (497)
+ . .....++.....+...+++++++...++++||+|.+.+|+..+|+++||| .+.+++++++....++++
T Consensus 79 ~------~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l 149 (470)
T PLN03015 79 D------A---TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYL 149 (470)
T ss_pred C------c---cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhh
Confidence 1 0 22234455566777889998887545789999999999999999999999 577777777766555544
Q ss_pred hh-ccC--C----CCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHH
Q 010940 162 EI-SKV--S----KFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKE 234 (497)
Q Consensus 162 ~~-~~~--~----~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~ 234 (497)
.. ... . ...+..+||+|. ++..+++.++.... ...+..+.... ....+++++++|||.+||+.+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~-~~~~~a~gvlvNTf~eLE~~~~~~ 223 (470)
T PLN03015 150 PVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRS--DQQYKECVRSG-LEVPMSDGVLVNTWEELQGNTLAA 223 (470)
T ss_pred hhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCC--cHHHHHHHHHH-HhcccCCEEEEechHHHhHHHHHH
Confidence 21 111 1 112345788876 77788886554322 11233444333 346789999999999999999999
Q ss_pred HHhhc------CCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHH
Q 010940 235 YKRVK------GDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLEL 308 (497)
Q Consensus 235 ~~~~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~ 308 (497)
++..+ +++++.|||+.... .....++++.+||++++++++|||||||+...+.+++.++
T Consensus 224 l~~~~~~~~~~~~~v~~VGPl~~~~---------------~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~el 288 (470)
T PLN03015 224 LREDMELNRVMKVPVYPIGPIVRTN---------------VHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVEL 288 (470)
T ss_pred HHhhcccccccCCceEEecCCCCCc---------------ccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHH
Confidence 87642 25799999995211 0011235799999999888999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEeCCCC--------CCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHH
Q 010940 309 GLGLEASSQPFIWVIRGGER--------SQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTL 380 (497)
Q Consensus 309 ~~al~~~~~~~i~~~~~~~~--------~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~ 380 (497)
+.+|+.++++|||+++.... .++...+ +|++|.++....++++.+|+||.++|+|+++++|||||||||++
T Consensus 289 a~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~-lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~ 367 (470)
T PLN03015 289 AWGLELSGQRFVWVLRRPASYLGASSSDDDQVSAS-LPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVL 367 (470)
T ss_pred HHHHHhCCCcEEEEEecCccccccccccccchhhc-CChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHH
Confidence 99999999999999974321 1112223 88999999998899999999999999999999999999999999
Q ss_pred HHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcC-CchhHHHHHHH
Q 010940 381 EGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR-GKQGEKRRKRA 459 (497)
Q Consensus 381 eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~-~~~~~~~~~~a 459 (497)
||+++|||||++|+++||+.||+++++++|+|+++.... . ...++.++|+++|+++|++ ++++.++|+||
T Consensus 368 Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~------~---~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra 438 (470)
T PLN03015 368 ESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELP------S---EKVIGREEVASLVRKIVAEEDEEGQKIRAKA 438 (470)
T ss_pred HHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccc------c---CCccCHHHHHHHHHHHHccCcccHHHHHHHH
Confidence 999999999999999999999999988899999996211 0 1138999999999999963 36688999999
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHH
Q 010940 460 RQLGEIANRAIGVGGSSHRNIEMLIEFV 487 (497)
Q Consensus 460 ~~~~~~~~~a~~~gg~~~~~~~~~~~~~ 487 (497)
++|++.+++|+++||||.+++++||+++
T Consensus 439 ~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 439 EEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 9999999999999999999999999875
No 12
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=8.2e-63 Score=500.91 Aligned_cols=454 Identities=26% Similarity=0.414 Sum_probs=337.1
Q ss_pred CCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhh-h---hhc-CCCeeEEEeeCCC
Q 010940 1 MASPLPAHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKR-A---VES-GLSIQLLQLEFPS 75 (497)
Q Consensus 1 m~~~~~~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~-~---~~~-~~~i~f~~i~~~~ 75 (497)
|.+. ..++||+++|+|++||++|++.||+.|+.+|..|||++++.+..++...... . ... ...++|..+|
T Consensus 1 ~~~~--~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p--- 75 (480)
T PLN02555 1 MESE--SSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE--- 75 (480)
T ss_pred CCCC--CCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC---
Confidence 4443 3478999999999999999999999999999999999999877655421100 0 000 1124444443
Q ss_pred ccCCCCCCCCCCCCCCChhHHHHHHHHH-HHhhHHHHHHHhhc---CCCCcEEEeCCCCcchHHHHHHcCCCeEEEccch
Q 010940 76 VESGLPQGCENMDKLPSRDLIKNFFHAA-SMLKQPFEQLFDKL---HPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMG 151 (497)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~---~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 151 (497)
+++|++.+.. ... . .++... ..+...++++++.. ..++++||+|.+.+|+..+|+++|||.+.+++++
T Consensus 76 --dglp~~~~~~---~~~--~-~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~ 147 (480)
T PLN02555 76 --DGWAEDDPRR---QDL--D-LYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQS 147 (480)
T ss_pred --CCCCCCcccc---cCH--H-HHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeeccc
Confidence 4666554321 111 1 222332 34555677766643 1245999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcc-C--C---CCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchH
Q 010940 152 CFACCCTHKLEISK-V--S---KFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFE 225 (497)
Q Consensus 152 ~~~~~~~~~~~~~~-~--~---~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 225 (497)
++.+..++++.... + . +..+..+||+|. ++..+++.++.........+ ..+.+..+...+++++++|||.
T Consensus 148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~-~~~~~~~~~~~~a~~vlvNTf~ 223 (480)
T PLN02555 148 CACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLR-RAILGQYKNLDKPFCILIDTFQ 223 (480)
T ss_pred HHHHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHH-HHHHHHHHhcccCCEEEEEchH
Confidence 99888777663321 1 1 112345788886 77788888764322221222 2233333455778999999999
Q ss_pred HhhHHHHHHHHhhcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhH
Q 010940 226 ELEAEYVKEYKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQL 305 (497)
Q Consensus 226 ~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~ 305 (497)
+||+.+++.++... + ++.|||+....... .. ... +..+..++++.+||++++++++|||||||+...+.+++
T Consensus 224 eLE~~~~~~l~~~~-~-v~~iGPl~~~~~~~-~~-~~~----~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~ 295 (480)
T PLN02555 224 ELEKEIIDYMSKLC-P-IKPVGPLFKMAKTP-NS-DVK----GDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQI 295 (480)
T ss_pred HHhHHHHHHHhhCC-C-EEEeCcccCccccc-cc-ccc----ccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHH
Confidence 99999999887643 4 99999995432110 00 000 01123457899999999888899999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCcc-ccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHh
Q 010940 306 LELGLGLEASSQPFIWVIRGGERSQGLE-KWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVS 384 (497)
Q Consensus 306 ~~~~~al~~~~~~~i~~~~~~~~~~~~~-~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~ 384 (497)
.+++.+|+.++.+|||+++......... .+ +|+++.++. .+|+.+.+|+||.+||.|+++++|||||||||++||++
T Consensus 296 ~ela~~l~~~~~~flW~~~~~~~~~~~~~~~-lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~ 373 (480)
T PLN02555 296 DEIAYGVLNSGVSFLWVMRPPHKDSGVEPHV-LPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALS 373 (480)
T ss_pred HHHHHHHHhcCCeEEEEEecCcccccchhhc-CChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHH
Confidence 9999999999999999987432110010 12 788887665 46778889999999999999999999999999999999
Q ss_pred hCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 010940 385 AGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGE 464 (497)
Q Consensus 385 ~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~ 464 (497)
+|||||++|+++||+.||+++++++|+|+++.... ..+ ..++.++|.++|+++|++ +++.++|+||++|++
T Consensus 374 ~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~-----~~~---~~v~~~~v~~~v~~vm~~-~~g~~~r~ra~~l~~ 444 (480)
T PLN02555 374 SGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGE-----AEN---KLITREEVAECLLEATVG-EKAAELKQNALKWKE 444 (480)
T ss_pred cCCCEEeCCCccccHHHHHHHHHHhCceEEccCCc-----ccc---CcCcHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Confidence 99999999999999999999988789999995311 000 137999999999999985 567899999999999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHhh
Q 010940 465 IANRAIGVGGSSHRNIEMLIEFVIQQ 490 (497)
Q Consensus 465 ~~~~a~~~gg~~~~~~~~~~~~~~~~ 490 (497)
.+++|+++||||++++++||+++...
T Consensus 445 ~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 445 EAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765
No 13
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.5e-63 Score=501.97 Aligned_cols=447 Identities=28% Similarity=0.468 Sum_probs=332.4
Q ss_pred CCCCCCCCCcEEEEEcCCCccCHHHHHHHHHH--HHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccC
Q 010940 1 MASPLPAHQLHFVLIPLMSPGHLIPMIDMARL--LAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVES 78 (497)
Q Consensus 1 m~~~~~~~~~~il~~~~p~~GHi~P~l~LA~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~ 78 (497)
|++. ...+.||+++|+|++||++|++.||+. |++||++|||++++.+.+++.... .....+++..+| +
T Consensus 1 ~~~~-~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~-----~ 70 (456)
T PLN02210 1 MGSS-EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFS-----D 70 (456)
T ss_pred CCCc-CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECC-----C
Confidence 5554 234689999999999999999999999 569999999999998876653321 112246665554 3
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhh
Q 010940 79 GLPQGCENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCT 158 (497)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 158 (497)
++|++.+ .... ..+....+.+...+++++++. +||+||+|.+.+|+..+|+++|||.+.++++++..+..+
T Consensus 71 glp~~~~-----~~~~--~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~ 141 (456)
T PLN02210 71 GLPKDDP-----RAPE--TLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVY 141 (456)
T ss_pred CCCCCcc-----cCHH--HHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHH
Confidence 6665532 1111 122222245566788888877 899999999999999999999999999999999887766
Q ss_pred hhhhh-ccC--CC---CcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHH
Q 010940 159 HKLEI-SKV--SK---FESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYV 232 (497)
Q Consensus 159 ~~~~~-~~~--~~---~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~ 232 (497)
++... ..+ .. .....+|+++. +...+++.++..... ..+..+..+..+...+++++++|||.+||+.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 216 (456)
T PLN02210 142 YRYYMKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGG--AHFNNLMAEFADCLRYVKWVLVNSFYELESEII 216 (456)
T ss_pred HhhhhccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCc--hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHH
Confidence 65421 111 10 12234777765 566777775543221 113333444444456678999999999999999
Q ss_pred HHHHhhcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHH
Q 010940 233 KEYKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGL 312 (497)
Q Consensus 233 ~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al 312 (497)
+.++. . +++++|||+............-..+.....+..+.+|.+||+..+++++|||||||....+.+++.+++.+|
T Consensus 217 ~~l~~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l 294 (456)
T PLN02210 217 ESMAD-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKAL 294 (456)
T ss_pred HHHhh-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 98876 3 689999999532100000000000000011234567899999998889999999999999999999999999
Q ss_pred HhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeec
Q 010940 313 EASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTC 392 (497)
Q Consensus 313 ~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~i 392 (497)
+.++.+|||+++...... .++++.++...++..+.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 295 ~~~~~~flw~~~~~~~~~------~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~ 368 (456)
T PLN02210 295 KNRGVPFLWVIRPKEKAQ------NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAY 368 (456)
T ss_pred HhCCCCEEEEEeCCcccc------chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEec
Confidence 999999999998542211 23456555433555677999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhcc
Q 010940 393 PLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGV 472 (497)
Q Consensus 393 P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~ 472 (497)
|+++||+.||+++++++|+|+.+...+ .+ +.+++++|+++|+++|.| +.++++|+||++|++.+++|+++
T Consensus 369 P~~~DQ~~na~~~~~~~g~G~~l~~~~------~~---~~~~~~~l~~av~~~m~~-~~g~~~r~~a~~l~~~a~~Av~~ 438 (456)
T PLN02210 369 PSWTDQPIDARLLVDVFGIGVRMRNDA------VD---GELKVEEVERCIEAVTEG-PAAADIRRRAAELKHVARLALAP 438 (456)
T ss_pred ccccccHHHHHHHHHHhCeEEEEeccc------cC---CcCCHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999977799999986421 01 138999999999999985 55778999999999999999999
Q ss_pred CCChHHHHHHHHHHHHh
Q 010940 473 GGSSHRNIEMLIEFVIQ 489 (497)
Q Consensus 473 gg~~~~~~~~~~~~~~~ 489 (497)
||||++++++||+++..
T Consensus 439 gGSS~~~l~~~v~~~~~ 455 (456)
T PLN02210 439 GGSSARNLDLFISDITI 455 (456)
T ss_pred CCcHHHHHHHHHHHHhc
Confidence 99999999999998753
No 14
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.1e-62 Score=495.77 Aligned_cols=447 Identities=25% Similarity=0.406 Sum_probs=331.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCCCc-chhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHG--IKVTIVTTPLNT-TRFNITIKRAVESGLSIQLLQLEFPSVESGLPQG 83 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rG--H~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~ 83 (497)
|++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+............+++|+.+|.... .+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc
Confidence 4567999999999999999999999999998 999999999765 333322221111122699999983211 1110
Q ss_pred CCCCCCCCChhHHHHHHHHHHHh----hHHHHHHHhhcC---CCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHH
Q 010940 84 CENMDKLPSRDLIKNFFHAASML----KQPFEQLFDKLH---PRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACC 156 (497)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~ll~~~~---~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 156 (497)
.. ..+ ....++.....+ ...+.+++++.. .++++||+|.+.+|+..+|+++|||.+.+++++++.+.
T Consensus 78 -~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~ 151 (468)
T PLN02207 78 -GG---TQS--VEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLA 151 (468)
T ss_pred -cc---ccC--HHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHH
Confidence 01 011 111222333233 445666665431 23499999999999999999999999999999998877
Q ss_pred hhhhhhhcc-CC-------CCcccccCCC-CCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHh
Q 010940 157 CTHKLEISK-VS-------KFESFVVPGL-PHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEEL 227 (497)
Q Consensus 157 ~~~~~~~~~-~~-------~~~~~~~pgl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 227 (497)
.+++..... +. ......+||+ +. ++..+++.++..... +..+. +......+++++++|||++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~~~----~~~~~-~~~~~~~~~~~vlvNtf~~L 223 (468)
T PLN02207 152 MMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVEDG----YDAYV-KLAILFTKANGILVNSSFDI 223 (468)
T ss_pred HHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCCcc----HHHHH-HHHHhcccCCEEEEEchHHH
Confidence 766552211 00 0122347887 44 677888876643221 22223 33335577899999999999
Q ss_pred hHHHHHHHHh-hcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHH
Q 010940 228 EAEYVKEYKR-VKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLL 306 (497)
Q Consensus 228 e~~~~~~~~~-~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 306 (497)
|+++++.++. ...++++.|||++......... .....++++.+||++++++++|||||||+...+.++++
T Consensus 224 E~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~---------~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ 294 (468)
T PLN02207 224 EPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPE---------QDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVK 294 (468)
T ss_pred hHHHHHHHHhccCCCcEEEecCCcccccCCCCc---------cccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHH
Confidence 9999988865 3447899999996532110000 00112467999999998889999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhC
Q 010940 307 ELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAG 386 (497)
Q Consensus 307 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~G 386 (497)
+++.+|+.++++|||+++..... ...+ +|++|.++.. +|..+.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 295 ela~~l~~~~~~flW~~r~~~~~--~~~~-lp~~f~er~~-~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~G 370 (468)
T PLN02207 295 EIAHGLELCQYRFLWSLRTEEVT--NDDL-LPEGFLDRVS-GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFG 370 (468)
T ss_pred HHHHHHHHCCCcEEEEEeCCCcc--cccc-CCHHHHhhcC-CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcC
Confidence 99999999999999999853211 1123 8889987765 556777999999999999999999999999999999999
Q ss_pred CceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 010940 387 VPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIA 466 (497)
Q Consensus 387 vP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~ 466 (497)
||||++|+++||+.||+++++++|+|+++.... .+.. +..++.++|+++|+++|++ ++++||+||+++++.+
T Consensus 371 VP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~--~~~~----~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a 442 (468)
T PLN02207 371 VPIVTWPMYAEQQLNAFLMVKELKLAVELKLDY--RVHS----DEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMI 442 (468)
T ss_pred CCEEecCccccchhhHHHHHHHhCceEEEeccc--cccc----CCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHH
Confidence 999999999999999999878899999885321 0000 0136999999999999972 2589999999999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHhhh
Q 010940 467 NRAIGVGGSSHRNIEMLIEFVIQQT 491 (497)
Q Consensus 467 ~~a~~~gg~~~~~~~~~~~~~~~~~ 491 (497)
++|+++||||.+++++||+++...|
T Consensus 443 ~~A~~~GGSS~~~l~~~v~~~~~~~ 467 (468)
T PLN02207 443 QRATKNGGSSFAAIEKFIHDVIGIK 467 (468)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998765
No 15
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.8e-62 Score=493.26 Aligned_cols=431 Identities=26% Similarity=0.468 Sum_probs=322.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEE--EeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHG--IKVTI--VTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQG 83 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rG--H~Vt~--~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~ 83 (497)
.+.||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+.+.........++++|+.+|++.- .+..
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~ 78 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSS 78 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCc
Confidence 466999999999999999999999999998 55666 4444433322221111011123699999885421 1111
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcC--CCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhh
Q 010940 84 CENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLH--PRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKL 161 (497)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 161 (497)
.... . .....+......+...+++++++.. .++++||+|.+.+|+..+|+++|||.+.+++++++.+..+++.
T Consensus 79 --~~~~-~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~ 153 (451)
T PLN03004 79 --STSR-H--HHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYL 153 (451)
T ss_pred --cccc-c--CHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHH
Confidence 1111 1 1112233333455556666666542 2469999999999999999999999999999999988877765
Q ss_pred hhcc-C----C--CCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHH
Q 010940 162 EISK-V----S--KFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKE 234 (497)
Q Consensus 162 ~~~~-~----~--~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~ 234 (497)
.... . . ...+..+||+|. ++..+++.++..... . ...++.+......+++++++|||++||+.+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~~--~-~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~ 227 (451)
T PLN03004 154 PTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERDD--E-VYDVFIMFGKQLSKSSGIIINTFDALENRAIKA 227 (451)
T ss_pred HhccccccccccccCCeecCCCCCC---CChHHCchhhcCCch--H-HHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHH
Confidence 3211 0 0 011235788876 777888887654321 1 223344444456778899999999999999999
Q ss_pred HHhhcC-CcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHH
Q 010940 235 YKRVKG-DKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLE 313 (497)
Q Consensus 235 ~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~ 313 (497)
++..++ ++++.|||+...... ... . ...+.++.+||++++++++|||||||+..++.+++++++.+|+
T Consensus 228 l~~~~~~~~v~~vGPl~~~~~~-~~~---------~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~ 296 (451)
T PLN03004 228 ITEELCFRNIYPIGPLIVNGRI-EDR---------N-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLE 296 (451)
T ss_pred HHhcCCCCCEEEEeeeccCccc-ccc---------c-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 977543 689999999532110 000 1 1123569999999988899999999999999999999999999
Q ss_pred hCCCCEEEEEeCCCCCC----CccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCce
Q 010940 314 ASSQPFIWVIRGGERSQ----GLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPL 389 (497)
Q Consensus 314 ~~~~~~i~~~~~~~~~~----~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~ 389 (497)
.++++|||+++...... ..+.+ +|++|.++....|+++.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 297 ~s~~~FlW~~r~~~~~~~~~~~~~~~-lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~ 375 (451)
T PLN03004 297 KSGQRFLWVVRNPPELEKTELDLKSL-LPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPM 375 (451)
T ss_pred HCCCCEEEEEcCCccccccccchhhh-CChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCE
Confidence 99999999998532100 11223 78999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 010940 390 VTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRA 469 (497)
Q Consensus 390 v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a 469 (497)
|++|+++||+.||+++++++|+|++++..+ .+.+++++|+++|+++|+| ++||++++++++..+.|
T Consensus 376 v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~----------~~~~~~e~l~~av~~vm~~----~~~r~~a~~~~~~a~~A 441 (451)
T PLN03004 376 VAWPLYAEQRFNRVMIVDEIKIAISMNESE----------TGFVSSTEVEKRVQEIIGE----CPVRERTMAMKNAAELA 441 (451)
T ss_pred EeccccccchhhHHHHHHHhCceEEecCCc----------CCccCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHH
Confidence 999999999999999977789999997532 0127999999999999997 89999999999999999
Q ss_pred hccCCChHH
Q 010940 470 IGVGGSSHR 478 (497)
Q Consensus 470 ~~~gg~~~~ 478 (497)
+++||||++
T Consensus 442 v~~GGSS~~ 450 (451)
T PLN03004 442 LTETGSSHT 450 (451)
T ss_pred hcCCCCCCC
Confidence 999999864
No 16
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=7.8e-62 Score=493.60 Aligned_cols=423 Identities=26% Similarity=0.424 Sum_probs=323.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMD 88 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~ 88 (497)
+.||+++|+|++||++|++.||+.|+.+|++|||++++.+..++.+... ...+++|+.+|. +++.+.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~-----g~~~~~---- 72 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISD-----GQDDDP---- 72 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCC-----CCCCCc----
Confidence 5699999999999999999999999999999999999988766554311 112689988873 332211
Q ss_pred CCCChhHHHHHHHHHH-HhhHHHHHHHhhcC--CCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhcc
Q 010940 89 KLPSRDLIKNFFHAAS-MLKQPFEQLFDKLH--PRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISK 165 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~--~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (497)
+ ..+. .+..... .+...+++++++.. .++++||+|.+.+|+..+|+++|||.+.++++++..+..+++.....
T Consensus 73 --~-~~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~ 148 (448)
T PLN02562 73 --P-RDFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELV 148 (448)
T ss_pred --c-ccHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHh
Confidence 1 1122 3334444 56777888887642 24589999999999999999999999999999888777655442110
Q ss_pred -----CC---CC--cc-cccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHH
Q 010940 166 -----VS---KF--ES-FVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKE 234 (497)
Q Consensus 166 -----~~---~~--~~-~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~ 234 (497)
.. +. .+ ..+||+|. ++.++++.++.........+ ..+.+..+...+++++++|||.+||+.+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 224 (448)
T PLN02562 149 RTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARF-KFWTRTLERTKSLRWILMNSFKDEEYDDVKN 224 (448)
T ss_pred hccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHH-HHHHHHHhccccCCEEEEcChhhhCHHHHHH
Confidence 00 00 11 14677765 67788887654332111112 3333444455678899999999999988886
Q ss_pred HHh----hcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCc-CCCHHhHHHHH
Q 010940 235 YKR----VKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSIC-GLATWQLLELG 309 (497)
Q Consensus 235 ~~~----~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~~~ 309 (497)
+.. +..++++.|||++...... . +.. ..+..+.++.+||++++++++|||||||+. ..+.+++++++
T Consensus 225 ~~~~~~~~~~~~v~~iGpl~~~~~~~-~---~~~----~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~ 296 (448)
T PLN02562 225 HQASYNNGQNPQILQIGPLHNQEATT-I---TKP----SFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLA 296 (448)
T ss_pred HHhhhccccCCCEEEecCcccccccc-c---CCC----ccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHH
Confidence 653 3457899999996532100 0 000 011224567799999988899999999986 57889999999
Q ss_pred HHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCce
Q 010940 310 LGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPL 389 (497)
Q Consensus 310 ~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~ 389 (497)
.+|++++++|||+++.+.... +|++|.++.. +|+++.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 297 ~~l~~~g~~fiW~~~~~~~~~------l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~ 369 (448)
T PLN02562 297 LALEASGRPFIWVLNPVWREG------LPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRL 369 (448)
T ss_pred HHHHHCCCCEEEEEcCCchhh------CCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCE
Confidence 999999999999997532211 7788877664 678888999999999999999999999999999999999999
Q ss_pred eeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 010940 390 VTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRA 469 (497)
Q Consensus 390 v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a 469 (497)
|++|+++||+.||+++++.+|+|+.+. + ++.++|.++|+++|+| ++||+||++++++++++
T Consensus 370 l~~P~~~DQ~~na~~~~~~~g~g~~~~--~-------------~~~~~l~~~v~~~l~~----~~~r~~a~~l~~~~~~~ 430 (448)
T PLN02562 370 LCYPVAGDQFVNCAYIVDVWKIGVRIS--G-------------FGQKEVEEGLRKVMED----SGMGERLMKLRERAMGE 430 (448)
T ss_pred EeCCcccchHHHHHHHHHHhCceeEeC--C-------------CCHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHhc
Confidence 999999999999999977679998884 3 7899999999999988 89999999999999877
Q ss_pred hccCCChHHHHHHHHHHH
Q 010940 470 IGVGGSSHRNIEMLIEFV 487 (497)
Q Consensus 470 ~~~gg~~~~~~~~~~~~~ 487 (497)
++||||++++++||+++
T Consensus 431 -~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 431 -EARLRSMMNFTTLKDEL 447 (448)
T ss_pred -CCCCCHHHHHHHHHHHh
Confidence 77899999999999986
No 17
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.9e-61 Score=489.16 Aligned_cols=453 Identities=28% Similarity=0.468 Sum_probs=340.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
.++||+++|+|++||++|++.||+.|+.||+.|||++++.+..++.+... ....+++++.+|++..+ ++|++.+..
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~d-glp~~~~~~ 80 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSVP-GLPSSAESS 80 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCccC-CCCCCcccc
Confidence 46799999999999999999999999999999999999988766553211 11226999999987654 787765543
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhh---c
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEI---S 164 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~---~ 164 (497)
..... .....+....+.+...+++++++. ++++||+|.+.+|+..+|+++|||.+.++++++..+.++++... .
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~ 157 (472)
T PLN02670 81 TDVPY-TKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG 157 (472)
T ss_pred cccch-hhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc
Confidence 32221 112234455677788899999887 89999999999999999999999999999999888776543311 0
Q ss_pred cC--CCCccc-ccCCCCC---cccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhh
Q 010940 165 KV--SKFESF-VVPGLPH---RIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRV 238 (497)
Q Consensus 165 ~~--~~~~~~-~~pgl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~ 238 (497)
.. ...... .+|++.+ .+.+..+++++++.........+..+. +......+++++++|||.+||+.+++.++..
T Consensus 158 ~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~ 236 (472)
T PLN02670 158 GDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL 236 (472)
T ss_pred ccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHHHh
Confidence 10 111111 2444321 223455677776543221111123333 3333456789999999999999999999876
Q ss_pred cCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCC
Q 010940 239 KGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQP 318 (497)
Q Consensus 239 ~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~ 318 (497)
++++++.|||+....... ..... .....++++.+||++++++++|||||||+..++.+++.+++.+|+.++++
T Consensus 237 ~~~~v~~VGPl~~~~~~~---~~~~~----~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~ 309 (472)
T PLN02670 237 YRKPIIPIGFLPPVIEDD---EEDDT----IDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETP 309 (472)
T ss_pred hCCCeEEEecCCcccccc---ccccc----cccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCC
Confidence 667899999995321100 00000 00011357999999998889999999999999999999999999999999
Q ss_pred EEEEEeCCCCC-CCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeecccccc
Q 010940 319 FIWVIRGGERS-QGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAE 397 (497)
Q Consensus 319 ~i~~~~~~~~~-~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~D 397 (497)
|||+++..... .....+ +|++|.++....++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 310 FlWv~r~~~~~~~~~~~~-lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 388 (472)
T PLN02670 310 FFWVLRNEPGTTQNALEM-LPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNE 388 (472)
T ss_pred EEEEEcCCcccccchhhc-CChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhc
Confidence 99999853221 111113 8999999998889999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChH
Q 010940 398 QFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSH 477 (497)
Q Consensus 398 Q~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~ 477 (497)
|+.||++++ ++|+|+.++..+ .+ +.++.++|+++|+++|.| +.+++||+||+++++.+++. ++. .
T Consensus 389 Q~~Na~~v~-~~g~Gv~l~~~~------~~---~~~~~e~i~~av~~vm~~-~~g~~~r~~a~~l~~~~~~~---~~~-~ 453 (472)
T PLN02670 389 QGLNTRLLH-GKKLGLEVPRDE------RD---GSFTSDSVAESVRLAMVD-DAGEEIRDKAKEMRNLFGDM---DRN-N 453 (472)
T ss_pred cHHHHHHHH-HcCeeEEeeccc------cC---CcCcHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHhCc---chh-H
Confidence 999999994 599999997532 11 138999999999999986 45679999999999999854 443 6
Q ss_pred HHHHHHHHHHHhhh
Q 010940 478 RNIEMLIEFVIQQT 491 (497)
Q Consensus 478 ~~~~~~~~~~~~~~ 491 (497)
+.+++|++.+...+
T Consensus 454 ~~~~~~~~~l~~~~ 467 (472)
T PLN02670 454 RYVDELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHHHHhc
Confidence 78889999887655
No 18
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.2e-61 Score=486.11 Aligned_cols=441 Identities=26% Similarity=0.431 Sum_probs=325.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAE-HGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCEN 86 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~ 86 (497)
.++||+++|+|++||++|++.||+.|+. +|+.|||++++.+.. +..... .....+++|+.++ ++++.+.+.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~-~~~~~~i~~~~i~-----dglp~g~~~ 73 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPN-HNNVENLSFLTFS-----DGFDDGVIS 73 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhcc-CCCCCCEEEEEcC-----CCCCCcccc
Confidence 4679999999999999999999999996 699999999986421 111110 0112258888886 366665332
Q ss_pred CCCCCChhHHHHHHHHHHHhhHHHHHHHhhcC---CCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhh
Q 010940 87 MDKLPSRDLIKNFFHAASMLKQPFEQLFDKLH---PRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEI 163 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 163 (497)
.. . .....+......+...+++++++.. .++++||+|.+.+|+..+|+++|||.+.+++++++.+..+++...
T Consensus 74 ~~--~--~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 74 NT--D--DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred cc--c--cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 11 1 1222333444455566777766531 356999999999999999999999999999999998887766531
Q ss_pred ccCCCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhc--cCcEEEEcchHHhhHHHHHHHHhhcCC
Q 010940 164 SKVSKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQ--SADGIVVNTFEELEAEYVKEYKRVKGD 241 (497)
Q Consensus 164 ~~~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~le~~~~~~~~~~~~~ 241 (497)
. ......+||+|. ++..+++.++..... ...+..++.+..+... .++++++|||++||+.+++.++. .
T Consensus 150 ~---~~~~~~iPglp~---l~~~dlp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~ 219 (455)
T PLN02152 150 G---NNSVFEFPNLPS---LEIRDLPSFLSPSNT-NKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---I 219 (455)
T ss_pred c---CCCeeecCCCCC---CchHHCchhhcCCCC-chhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---C
Confidence 1 112345888876 677888887753221 1112233333333322 35799999999999999998865 2
Q ss_pred cEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEE
Q 010940 242 KVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIW 321 (497)
Q Consensus 242 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 321 (497)
+++.|||+....... ..+.. .....+..+.++.+||++++++++|||||||+..++.+++.+++.+|+.++++|||
T Consensus 220 ~v~~VGPL~~~~~~~---~~~~~-~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 295 (455)
T PLN02152 220 EMVAVGPLLPAEIFT---GSESG-KDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLW 295 (455)
T ss_pred CEEEEcccCcccccc---ccccC-ccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 699999995321100 00000 00000122457999999998889999999999999999999999999999999999
Q ss_pred EEeCCCCC-----CCcccc-ccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeecccc
Q 010940 322 VIRGGERS-----QGLEKW-IQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLF 395 (497)
Q Consensus 322 ~~~~~~~~-----~~~~~~-~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~ 395 (497)
+++..... .....+ .+|++|.++.. +|.++.+|+||.+||+|+++++|||||||||+.||+++|||+|++|++
T Consensus 296 v~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~-~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~ 374 (455)
T PLN02152 296 VITDKLNREAKIEGEEETEIEKIAGFRHELE-EVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMW 374 (455)
T ss_pred EEecCcccccccccccccccccchhHHHhcc-CCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecccc
Confidence 99853211 000001 03678876654 566777999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCC
Q 010940 396 AEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGS 475 (497)
Q Consensus 396 ~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~ 475 (497)
+||+.||+++++.+|+|+.+.... +...+.++|+++|+++|+| .+.+||+||++|++.+++|.++|||
T Consensus 375 ~DQ~~na~~~~~~~~~G~~~~~~~----------~~~~~~e~l~~av~~vm~~--~~~~~r~~a~~~~~~~~~a~~~ggs 442 (455)
T PLN02152 375 SDQPANAKLLEEIWKTGVRVRENS----------EGLVERGEIRRCLEAVMEE--KSVELRESAEKWKRLAIEAGGEGGS 442 (455)
T ss_pred ccchHHHHHHHHHhCceEEeecCc----------CCcCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999987778888875422 1136899999999999975 2457999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 010940 476 SHRNIEMLIEFV 487 (497)
Q Consensus 476 ~~~~~~~~~~~~ 487 (497)
|.+++++||+++
T Consensus 443 S~~nl~~li~~i 454 (455)
T PLN02152 443 SDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHHHh
Confidence 999999999975
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.4e-61 Score=492.63 Aligned_cols=436 Identities=30% Similarity=0.463 Sum_probs=328.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGC 84 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~ 84 (497)
+.++||+++|+|++||++|++.||++|+.| ||+|||++++.+...+++.. ...+++|+.+|. +++...
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~-----~~p~~~ 77 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPN-----VIPSEL 77 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCC-----CCCCcc
Confidence 568999999999999999999999999999 99999999999887766541 123799988873 344332
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhc
Q 010940 85 ENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEIS 164 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 164 (497)
+.. .+ ....+....+.+...+++++++...++|+||+|.+++|+..+|+++|||++.++++++..+..++++...
T Consensus 78 ~~~---~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~ 152 (459)
T PLN02448 78 VRA---AD--FPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLL 152 (459)
T ss_pred ccc---cC--HHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhh
Confidence 211 11 1112222223556667777776434789999999999999999999999999999999777665554311
Q ss_pred c-----CCCC-----c-ccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHH
Q 010940 165 K-----VSKF-----E-SFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVK 233 (497)
Q Consensus 165 ~-----~~~~-----~-~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~ 233 (497)
. +... . ...+||++. +...+++.++.... ...+..+. .......+++++++|||++||+.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~--~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~ 226 (459)
T PLN02448 153 PQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGNS--RRVLKRIL-EAFSWVPKAQYLLFTSFYELEAQAID 226 (459)
T ss_pred hhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCCc--hHHHHHHH-HHHhhcccCCEEEEccHHHhhHHHHH
Confidence 0 1000 0 113666654 56667776654322 11122222 33334456789999999999999999
Q ss_pred HHHhhcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHH
Q 010940 234 EYKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLE 313 (497)
Q Consensus 234 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~ 313 (497)
+++..++++++.|||+......... ..+. .....+.++.+|++..+++++|||||||+...+.+++++++++|+
T Consensus 227 ~l~~~~~~~~~~iGP~~~~~~~~~~-~~~~-----~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~ 300 (459)
T PLN02448 227 ALKSKFPFPVYPIGPSIPYMELKDN-SSSS-----NNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLR 300 (459)
T ss_pred HHHhhcCCceEEecCcccccccCCC-cccc-----ccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHH
Confidence 9988776789999999532111000 0000 001123478999999988899999999999888999999999999
Q ss_pred hCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeecc
Q 010940 314 ASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 314 ~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP 393 (497)
.++.+|||++.... .++.+.. ..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 301 ~~~~~~lw~~~~~~-----------~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P 368 (459)
T PLN02448 301 DSGVRFLWVARGEA-----------SRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFP 368 (459)
T ss_pred hCCCCEEEEEcCch-----------hhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecc
Confidence 99999999876421 1232222 35788889999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHHHHhcc
Q 010940 394 LFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRG-KQGEKRRKRARQLGEIANRAIGV 472 (497)
Q Consensus 394 ~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~-~~~~~~~~~a~~~~~~~~~a~~~ 472 (497)
+++||+.||+++++.+|+|+.+.... .. ...+++++|+++|+++|+|+ +++.+||++|+++++.+++|+.+
T Consensus 369 ~~~DQ~~na~~v~~~~g~G~~~~~~~-----~~---~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~ 440 (459)
T PLN02448 369 LFWDQPLNSKLIVEDWKIGWRVKREV-----GE---ETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAK 440 (459)
T ss_pred ccccchhhHHHHHHHhCceEEEeccc-----cc---CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999977789999886421 00 01379999999999999863 57789999999999999999999
Q ss_pred CCChHHHHHHHHHHHHh
Q 010940 473 GGSSHRNIEMLIEFVIQ 489 (497)
Q Consensus 473 gg~~~~~~~~~~~~~~~ 489 (497)
||||++++++||+++++
T Consensus 441 gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 441 GGSSDTNLDAFIRDISQ 457 (459)
T ss_pred CCcHHHHHHHHHHHHhc
Confidence 99999999999999874
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-60 Score=489.71 Aligned_cols=446 Identities=27% Similarity=0.402 Sum_probs=325.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCCCcchhh---hhHhhhh-hcCCCeeEEEeeCCCccCCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHG--IKVTIVTTPLNTTRFN---ITIKRAV-ESGLSIQLLQLEFPSVESGLPQ 82 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rG--H~Vt~~~~~~~~~~~~---~~~~~~~-~~~~~i~f~~i~~~~~~~~~~~ 82 (497)
|+||+++|+|++||++|++.||+.|+.+| ..|||++++.+..... ....... ....+++|+.+|++. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-----~~ 76 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD-----QP 76 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC-----CC
Confidence 67999999999999999999999999998 8899999998754321 1111100 012369999997542 11
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhc---C-CCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhh
Q 010940 83 GCENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKL---H-PRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCT 158 (497)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~-~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 158 (497)
. . . .......+......+.+.+++++.+. . .+.++||+|.+++|+..+|+++|||++.+++++++.+.++
T Consensus 77 ~-~--~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 77 T-T--E---DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred c-c--c---chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 1 0 0 11122222222244445566665431 1 1248999999999999999999999999999999998887
Q ss_pred hhhhhcc-C---------CCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhh
Q 010940 159 HKLEISK-V---------SKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELE 228 (497)
Q Consensus 159 ~~~~~~~-~---------~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le 228 (497)
++..... . +...+..+||++. .++..+++.++.... +..++.+......+++++++|||.+||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~--pl~~~dlp~~~~~~~-----~~~~~~~~~~~~~~~~gvlvNt~~eLe 223 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTR--PYPVKCLPSVLLSKE-----WLPLFLAQARRFREMKGILVNTVAELE 223 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCC--CCCHHHCCCcccCHH-----HHHHHHHHHHhcccCCEEEEechHHHh
Confidence 7653211 0 0012234777731 155567776553211 223333444556788999999999999
Q ss_pred HHHHHHHHhh--cCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHH
Q 010940 229 AEYVKEYKRV--KGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLL 306 (497)
Q Consensus 229 ~~~~~~~~~~--~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 306 (497)
+.+...+... ..++++.|||+....+... . .....++++.+||++.+++++|||||||+...+.+++.
T Consensus 224 ~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~-~---------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~ 293 (481)
T PLN02554 224 PQALKFFSGSSGDLPPVYPVGPVLHLENSGD-D---------SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAR 293 (481)
T ss_pred HHHHHHHHhcccCCCCEEEeCCCcccccccc-c---------cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHH
Confidence 9988888653 3378999999942221100 0 01124568999999998888999999999889999999
Q ss_pred HHHHHHHhCCCCEEEEEeCCCC---------CCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCch
Q 010940 307 ELGLGLEASSQPFIWVIRGGER---------SQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWN 377 (497)
Q Consensus 307 ~~~~al~~~~~~~i~~~~~~~~---------~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~g 377 (497)
+++.+|+.++++|||+++.... ......+ +|++|.++.. +|+++.+|+||.+||.|+++++||||||||
T Consensus 294 ~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~-lp~~~~~r~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~n 371 (481)
T PLN02554 294 EIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEI-LPEGFLDRTK-DIGKVIGWAPQVAVLAKPAIGGFVTHCGWN 371 (481)
T ss_pred HHHHHHHHcCCCeEEEEcCCcccccccccccccchhhh-CChHHHHHhc-cCceEEeeCCHHHHhCCcccCcccccCccc
Confidence 9999999999999999975321 0011122 6888887765 566777999999999999999999999999
Q ss_pred hHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHc-CCchhHHHH
Q 010940 378 STLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMD-RGKQGEKRR 456 (497)
Q Consensus 378 t~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~-~~~~~~~~~ 456 (497)
|++||+++|||||++|+++||+.||+++++++|+|+.++... ..++. .+....++.++|.++|+++|+ | ++||
T Consensus 372 S~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~-~~~~~-~~~~~~~~~e~l~~av~~vm~~~----~~~r 445 (481)
T PLN02554 372 SILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYW-RGDLL-AGEMETVTAEEIERGIRCLMEQD----SDVR 445 (481)
T ss_pred hHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccc-ccccc-ccccCeEcHHHHHHHHHHHhcCC----HHHH
Confidence 999999999999999999999999976558899999987421 00000 000113899999999999996 5 8999
Q ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhh
Q 010940 457 KRARQLGEIANRAIGVGGSSHRNIEMLIEFVIQQ 490 (497)
Q Consensus 457 ~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~~~~ 490 (497)
+||+++++.+++|+++||||.+++++||+++...
T Consensus 446 ~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 446 KRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998753
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.6e-60 Score=485.97 Aligned_cols=452 Identities=27% Similarity=0.451 Sum_probs=319.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCC---eEEEEeCCCCcc-hhhhhHhhhhhcCCCeeEEEeeCCCccCCCCC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGI---KVTIVTTPLNTT-RFNITIKRAVESGLSIQLLQLEFPSVESGLPQ 82 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH---~Vt~~~~~~~~~-~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~ 82 (497)
|++.||+++|+|++||++|++.||+.|+.+|. .||+++++.+.. .............++|+|+.+|++.. +.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~ 76 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PP 76 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Cc
Confidence 45779999999999999999999999999984 567776554322 11111111111123699999986421 21
Q ss_pred CCCCCCCCCChhHHHHHHHH-HHHhhHHHHHHHhhcC---C-CCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHh
Q 010940 83 GCENMDKLPSRDLIKNFFHA-ASMLKQPFEQLFDKLH---P-RPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCC 157 (497)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~---~-~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 157 (497)
..+...... ...+..+... ...+.+.+.+++.+.. . ++++||+|.+.+|+..+|+++|||.+.+++++++.+..
T Consensus 77 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~ 155 (475)
T PLN02167 77 PMELFVKAS-EAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGM 155 (475)
T ss_pred cccccccch-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 111001000 1112122221 1223333444432211 1 45999999999999999999999999999999988777
Q ss_pred hhhhhh-ccCCC--------CcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhh
Q 010940 158 THKLEI-SKVSK--------FESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELE 228 (497)
Q Consensus 158 ~~~~~~-~~~~~--------~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le 228 (497)
+++... ....+ ..+..+||++.. ++..+++.++..... + ....+..+...+++++++|||++||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~~----~-~~~~~~~~~~~~a~~vlvNTf~eLE 228 (475)
T PLN02167 156 MKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKES----Y-EAWVEIAERFPEAKGILVNSFTELE 228 (475)
T ss_pred HHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcch----H-HHHHHHHHhhcccCEeeeccHHHHH
Confidence 665421 10000 122347787421 455666654432211 2 2222333445778999999999999
Q ss_pred HHHHHHHHhhc--CCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHH
Q 010940 229 AEYVKEYKRVK--GDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLL 306 (497)
Q Consensus 229 ~~~~~~~~~~~--~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 306 (497)
+.++++++... .+++++|||+....... . .. .....++++.+||+..+++++|||||||+...+.+++.
T Consensus 229 ~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~--~--~~-----~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ 299 (475)
T PLN02167 229 PNAFDYFSRLPENYPPVYPVGPILSLKDRT--S--PN-----LDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIK 299 (475)
T ss_pred HHHHHHHHhhcccCCeeEEecccccccccc--C--CC-----CCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHH
Confidence 99999886641 26899999996432100 0 00 00112367999999998889999999999989999999
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCC-CCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhh
Q 010940 307 ELGLGLEASSQPFIWVIRGGERS-QGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSA 385 (497)
Q Consensus 307 ~~~~al~~~~~~~i~~~~~~~~~-~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~ 385 (497)
+++.+|+.++++|||+++..... .....+ +|++|.++..... ++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 300 ela~~l~~~~~~flw~~~~~~~~~~~~~~~-lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~ 377 (475)
T PLN02167 300 EIAQALELVGCRFLWSIRTNPAEYASPYEP-LPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWF 377 (475)
T ss_pred HHHHHHHhCCCcEEEEEecCcccccchhhh-CChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHc
Confidence 99999999999999999854211 001112 7888987776554 66699999999999999999999999999999999
Q ss_pred CCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 010940 386 GVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEI 465 (497)
Q Consensus 386 GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~ 465 (497)
|||||++|+++||+.||+++++++|+|+.+.... ++.. +..+++++|.++|+++|.++ +.||++|+++++.
T Consensus 378 GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~---~~~~---~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~ 448 (475)
T PLN02167 378 GVPIATWPMYAEQQLNAFTMVKELGLAVELRLDY---VSAY---GEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEA 448 (475)
T ss_pred CCCEEeccccccchhhHHHHHHHhCeeEEeeccc---cccc---CCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHH
Confidence 9999999999999999987657899999986531 0000 01379999999999999751 4899999999999
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhh
Q 010940 466 ANRAIGVGGSSHRNIEMLIEFVIQQ 490 (497)
Q Consensus 466 ~~~a~~~gg~~~~~~~~~~~~~~~~ 490 (497)
+++|+++||||++++++||+++..-
T Consensus 449 ~~~av~~gGsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 449 ARKAVMDGGSSFVAVKRFIDDLLGD 473 (475)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999998653
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-48 Score=402.84 Aligned_cols=412 Identities=17% Similarity=0.188 Sum_probs=279.4
Q ss_pred CcEEEEE-cCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccC--CCCC-CC
Q 010940 9 QLHFVLI-PLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVES--GLPQ-GC 84 (497)
Q Consensus 9 ~~~il~~-~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~--~~~~-~~ 84 (497)
..||+.+ |.++.||..-+-+|+++|++|||+||++++..... .... ...+++...++...... .... ..
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 4568755 88999999999999999999999999998764211 0000 11145544443211100 0000 00
Q ss_pred CCC-CCC-CChhHH----HHHHHHHH-Hh-hHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHc-CCCeEEEccchHHHH
Q 010940 85 ENM-DKL-PSRDLI----KNFFHAAS-ML-KQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKF-KIPTILFDGMGCFAC 155 (497)
Q Consensus 85 ~~~-~~~-~~~~~~----~~~~~~~~-~~-~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~ 155 (497)
... ... ...... ..+...++ .+ ...+.+++++...++|+||+|.+..|+..+|+.+ ++|.|.+++...+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 000 000 000110 11111111 11 2346777762223899999999888999999999 999988877654432
Q ss_pred HhhhhhhhccCCCCcccccCCCCCcccccccccCcccCCCCCcc-------------hhHHHHHHHHH--------hhhc
Q 010940 156 CCTHKLEISKVSKFESFVVPGLPHRIELIKAQLPEALNPAGSHV-------------QDLTQVRHNIR--------AAEQ 214 (497)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~--------~~~~ 214 (497)
.....-+ +|..+.++|.+.. ...+-++|.++..+.. ...+.+.++.. +...
T Consensus 173 ~~~~~gg----~p~~~syvP~~~~----~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~ 244 (507)
T PHA03392 173 NFETMGA----VSRHPVYYPNLWR----SKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRN 244 (507)
T ss_pred HHHhhcc----CCCCCeeeCCccc----CCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHh
Confidence 2111111 3455566665432 1112222222222110 00111112221 1123
Q ss_pred cCcEEEEcchHHhhHHHHHHHHhhcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEee
Q 010940 215 SADGIVVNTFEELEAEYVKEYKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACL 294 (497)
Q Consensus 215 ~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~ 294 (497)
+.+.+++|+.+.++.+ +++++++++|||++...+ ....+++++.+|++..+ +++|||||
T Consensus 245 ~~~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~--------------~~~~l~~~l~~fl~~~~-~g~V~vS~ 303 (507)
T PHA03392 245 RVQLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHKK--------------PPQPLDDYLEEFLNNST-NGVVYVSF 303 (507)
T ss_pred CCcEEEEecCccccCC------CCCCCCeeeecccccCCC--------------CCCCCCHHHHHHHhcCC-CcEEEEEC
Confidence 4466788888877654 578899999999976432 22346889999998874 46999999
Q ss_pred CCCcC---CCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccc
Q 010940 295 GSICG---LATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFL 371 (497)
Q Consensus 295 GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I 371 (497)
||+.. .+.+.++.+++++++++.+|||+++..... ...++|+.+.+|+||.++|+|+++++||
T Consensus 304 GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~--------------~~~p~Nv~i~~w~Pq~~lL~hp~v~~fI 369 (507)
T PHA03392 304 GSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA--------------INLPANVLTQKWFPQRAVLKHKNVKAFV 369 (507)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCc--------------ccCCCceEEecCCCHHHHhcCCCCCEEE
Confidence 99864 467889999999999999999999854321 0124899999999999999999999999
Q ss_pred cCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCch
Q 010940 372 THCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQ 451 (497)
Q Consensus 372 ~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~ 451 (497)
||||+||++||+++|||+|++|+++||+.||+|+ +++|+|+.+++.+ +++++|.+||+++++|
T Consensus 370 tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~~-------------~t~~~l~~ai~~vl~~--- 432 (507)
T PHA03392 370 TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTVT-------------VSAAQLVLAIVDVIEN--- 432 (507)
T ss_pred ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccCC-------------cCHHHHHHHHHHHhCC---
Confidence 9999999999999999999999999999999999 5599999999877 8999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhh
Q 010940 452 GEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFVIQQT 491 (497)
Q Consensus 452 ~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~~~~~ 491 (497)
++||++|+++++.+++. .-+..+.+..-|+.+.+.+
T Consensus 433 -~~y~~~a~~ls~~~~~~---p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 433 -PKYRKNLKELRHLIRHQ---PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred -HHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCC
Confidence 99999999999999864 4333445557777777665
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.7e-49 Score=412.85 Aligned_cols=386 Identities=21% Similarity=0.261 Sum_probs=225.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC---
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM--- 87 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~--- 87 (497)
||+++|. ++||+.++..|+++|++|||+||++++..... +... ....+++..++.+.............
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-cccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6788874 88999999999999999999999998753211 1111 12256666665432211111110000
Q ss_pred --CCCCChhHHHHHHHHH----HHhh---------HHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchH
Q 010940 88 --DKLPSRDLIKNFFHAA----SMLK---------QPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGC 152 (497)
Q Consensus 88 --~~~~~~~~~~~~~~~~----~~~~---------~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 152 (497)
................ .... ..+.+.+++. ++|++|+|.+..|+..+|+.+|+|.+.+.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 0000000111111111 1111 1122344555 899999999988999999999999987554432
Q ss_pred HHHHhhhhhhhccCCCCcccccCCCCCcccccccccCcccCCCCCcc-hhHHHHHHHHHhhh------------------
Q 010940 153 FACCCTHKLEISKVSKFESFVVPGLPHRIELIKAQLPEALNPAGSHV-QDLTQVRHNIRAAE------------------ 213 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------------ 213 (497)
.........+ .+..+.++|.... ...+-+++.++..+.. ..+..+..+.....
T Consensus 152 ~~~~~~~~~g----~p~~psyvP~~~s----~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (500)
T PF00201_consen 152 MYDLSSFSGG----VPSPPSYVPSMFS----DFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFREL 223 (500)
T ss_dssp CSCCTCCTSC----CCTSTTSTTCBCC----CSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHH
T ss_pred cchhhhhccC----CCCChHHhccccc----cCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHH
Confidence 2111111001 2334444443321 2233444444443332 11111111111110
Q ss_pred -ccCcEEEEcchHHhhHHHHHHHHhhcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEE
Q 010940 214 -QSADGIVVNTFEELEAEYVKEYKRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYA 292 (497)
Q Consensus 214 -~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~v 292 (497)
.....+++++.+.+ ++. +++.|++.+||+++..++ ..++++++.|++...++++|||
T Consensus 224 ~~~~~l~l~ns~~~l-----d~p-rp~~p~v~~vGgl~~~~~----------------~~l~~~~~~~~~~~~~~~vv~v 281 (500)
T PF00201_consen 224 LSNASLVLINSHPSL-----DFP-RPLLPNVVEVGGLHIKPA----------------KPLPEELWNFLDSSGKKGVVYV 281 (500)
T ss_dssp HHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S--------------------TCHHHHHHHTSTTTTTEEEEE
T ss_pred HHHHHHHhhhccccC-----cCC-cchhhcccccCccccccc----------------cccccccchhhhccCCCCEEEE
Confidence 00111222222222 222 345589999999975433 3367889999998556789999
Q ss_pred eeCCCcCCCH-HhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccc
Q 010940 293 CLGSICGLAT-WQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFL 371 (497)
Q Consensus 293 s~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I 371 (497)
||||+....+ +..+.++++|++++++|||++++... +. .++|+++.+|+||.+||.|+++++||
T Consensus 282 sfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~----------~~-----l~~n~~~~~W~PQ~~lL~hp~v~~fi 346 (500)
T PF00201_consen 282 SFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP----------EN-----LPKNVLIVKWLPQNDLLAHPRVKLFI 346 (500)
T ss_dssp E-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG----------CH-----HHTTEEEESS--HHHHHTSTTEEEEE
T ss_pred ecCcccchhHHHHHHHHHHHHhhCCCccccccccccc----------cc-----ccceEEEeccccchhhhhcccceeee
Confidence 9999986444 44788999999999999999986321 11 13899999999999999999999999
Q ss_pred cCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCch
Q 010940 372 THCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQ 451 (497)
Q Consensus 372 ~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~ 451 (497)
||||+||+.||+++|||+|++|+++||+.||+++ ++.|+|+.+++.+ +++++|.+||+++|+|
T Consensus 347 tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~~-------------~~~~~l~~ai~~vl~~--- 409 (500)
T PF00201_consen 347 THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKND-------------LTEEELRAAIREVLEN--- 409 (500)
T ss_dssp ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGGC--------------SHHHHHHHHHHHHHS---
T ss_pred eccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEecC-------------CcHHHHHHHHHHHHhh---
Confidence 9999999999999999999999999999999999 5599999999987 9999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010940 452 GEKRRKRARQLGEIANRA 469 (497)
Q Consensus 452 ~~~~~~~a~~~~~~~~~a 469 (497)
++|++||+++++.+++.
T Consensus 410 -~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 410 -PSYKENAKRLSSLFRDR 426 (500)
T ss_dssp -HHHHHHHHHHHHTTT--
T ss_pred -hHHHHHHHHHHHHHhcC
Confidence 99999999999999854
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=9.3e-43 Score=353.35 Aligned_cols=382 Identities=19% Similarity=0.222 Sum_probs=254.8
Q ss_pred EcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChh
Q 010940 15 IPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRD 94 (497)
Q Consensus 15 ~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~ 94 (497)
+.+|++||++|++.||++|++|||+|+|++++.+.+.++.. |+.|..++........... ... .....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~--~~~-~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE--NTE-EEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc--ccC-cchHH
Confidence 35799999999999999999999999999999998888776 8888888643111011111 000 11122
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCCCCccccc
Q 010940 95 LIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVSKFESFVV 174 (497)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (497)
....+..........+.+++++. +||+||+|.+.+++..+|+++|||+|.+++.+... ..+ +...
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~---------~~~~ 133 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKGD--RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEF---------EEMV 133 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccc---------cccc
Confidence 22223233333334456666666 99999999988899999999999999886543211 000 0001
Q ss_pred CCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhh------h--ccCcEEEEcchHHhhHHHHHHHHhhcCCcEEEe
Q 010940 175 PGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAA------E--QSADGIVVNTFEELEAEYVKEYKRVKGDKVWCI 246 (497)
Q Consensus 175 pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~v 246 (497)
+.+...+ +....... +........+..++.+..-. + ...+..+... ++.+.+....++++++++
T Consensus 134 ~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~-----~~~l~~~~~~~~~~~~~~ 205 (392)
T TIGR01426 134 SPAGEGS-AEEGAIAE--RGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYT-----PKAFQPAGETFDDSFTFV 205 (392)
T ss_pred cccchhh-hhhhcccc--chhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeC-----ChHhCCCccccCCCeEEE
Confidence 1111000 00000000 00000000011111111100 0 0011122222 223333345678899999
Q ss_pred ccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCC
Q 010940 247 GPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGG 326 (497)
Q Consensus 247 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 326 (497)
||+....+ +...|....+.+++||||+||+.....+.+..+++++++.+.+++|..+.+
T Consensus 206 Gp~~~~~~---------------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~ 264 (392)
T TIGR01426 206 GPCIGDRK---------------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRG 264 (392)
T ss_pred CCCCCCcc---------------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 99843211 122366555567799999999877677788889999999999999988765
Q ss_pred CCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHHH
Q 010940 327 ERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAV 406 (497)
Q Consensus 327 ~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~ 406 (497)
.... .+. ..++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+++
T Consensus 265 ~~~~---------~~~--~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l- 330 (392)
T TIGR01426 265 VDPA---------DLG--ELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI- 330 (392)
T ss_pred CChh---------Hhc--cCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-
Confidence 3321 111 12479999999999999999887 999999999999999999999999999999999999
Q ss_pred HHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 010940 407 QVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEF 486 (497)
Q Consensus 407 ~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~ 486 (497)
+++|+|+.+...+ +++++|.++|+++++| ++|+++++++++.+++. +|.. .+.++|+.
T Consensus 331 ~~~g~g~~l~~~~-------------~~~~~l~~ai~~~l~~----~~~~~~~~~l~~~~~~~---~~~~--~aa~~i~~ 388 (392)
T TIGR01426 331 AELGLGRHLPPEE-------------VTAEKLREAVLAVLSD----PRYAERLRKMRAEIREA---GGAR--RAADEIEG 388 (392)
T ss_pred HHCCCEEEecccc-------------CCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHc---CCHH--HHHHHHHH
Confidence 5599999998766 8999999999999998 89999999999999865 5554 66666665
Q ss_pred HH
Q 010940 487 VI 488 (497)
Q Consensus 487 ~~ 488 (497)
+.
T Consensus 389 ~~ 390 (392)
T TIGR01426 389 FL 390 (392)
T ss_pred hh
Confidence 43
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.2e-42 Score=350.84 Aligned_cols=386 Identities=15% Similarity=0.085 Sum_probs=246.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCC---
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCEN--- 86 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~--- 86 (497)
|||+|+++|+.||++|++.||++|++|||+|+|++++.+...++.. |++|..++..............
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 5899999999999999999999999999999999999887777765 8888887643111000000000
Q ss_pred CCCC-CChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhcc
Q 010940 87 MDKL-PSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISK 165 (497)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (497)
.... ........+......+...+.+.++++ +||+||+|.+.+++..+|+++|||++.+++++.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~--------- 140 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDW--GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS--------- 140 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc---------
Confidence 0000 001112222223344444445555556 9999999998888889999999999999887543210
Q ss_pred CCCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhh--cc-------CcEEEEcchHHhhHHHHHHHH
Q 010940 166 VSKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAE--QS-------ADGIVVNTFEELEAEYVKEYK 236 (497)
Q Consensus 166 ~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~s~~~le~~~~~~~~ 236 (497)
..+. | + . ............ ......+.....+.+... .. .+..++.. .+.+....
T Consensus 141 ---~~~~--~-~-~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-----~~~~~~~~ 204 (401)
T cd03784 141 ---AFPP--P-L-G---RANLRLYALLEA-ELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGF-----SPAVLPPP 204 (401)
T ss_pred ---cCCC--c-c-c---hHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEec-----CcccCCCC
Confidence 0000 0 0 0 000000000000 000000111111111111 00 00111100 00111112
Q ss_pred hhcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCC-HHhHHHHHHHHHhC
Q 010940 237 RVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLA-TWQLLELGLGLEAS 315 (497)
Q Consensus 237 ~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~ 315 (497)
..++++..++|......+ .....+++++.|++.. +++||||+||+.... ...+..++++++..
T Consensus 205 ~~~~~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~ 268 (401)
T cd03784 205 PDWPRFDLVTGYGFRDVP--------------YNGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATL 268 (401)
T ss_pred CCccccCcEeCCCCCCCC--------------CCCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHc
Confidence 334455556643222222 1223467788888764 459999999998744 45677789999999
Q ss_pred CCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeecccc
Q 010940 316 SQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLF 395 (497)
Q Consensus 316 ~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~ 395 (497)
+.++||+++...... ...++|+.+.+|+||..+|+++++ ||||||+||++||+++|||+|++|+.
T Consensus 269 ~~~~i~~~g~~~~~~-------------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~ 333 (401)
T cd03784 269 GQRAILSLGWGGLGA-------------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFF 333 (401)
T ss_pred CCeEEEEccCccccc-------------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCC
Confidence 999999988654321 013489999999999999999887 99999999999999999999999999
Q ss_pred ccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCC
Q 010940 396 AEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGS 475 (497)
Q Consensus 396 ~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~ 475 (497)
.||+.||+++ +++|+|+.++..+ +++++|.++|++++++ .++++++++++.+++. +|.
T Consensus 334 ~dQ~~~a~~~-~~~G~g~~l~~~~-------------~~~~~l~~al~~~l~~-----~~~~~~~~~~~~~~~~---~g~ 391 (401)
T cd03784 334 GDQPFWAARV-AELGAGPALDPRE-------------LTAERLAAALRRLLDP-----PSRRRAAALLRRIREE---DGV 391 (401)
T ss_pred CCcHHHHHHH-HHCCCCCCCCccc-------------CCHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHhc---cCH
Confidence 9999999999 5599999998766 8999999999999984 4566677777776533 443
Q ss_pred hHHHHHHHHHH
Q 010940 476 SHRNIEMLIEF 486 (497)
Q Consensus 476 ~~~~~~~~~~~ 486 (497)
..+.++|+.
T Consensus 392 --~~~~~~ie~ 400 (401)
T cd03784 392 --PSAADVIER 400 (401)
T ss_pred --HHHHHHHhh
Confidence 356666553
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1e-40 Score=334.88 Aligned_cols=393 Identities=17% Similarity=0.221 Sum_probs=253.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCC-CCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGC-ENM 87 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~-~~~ 87 (497)
+|||+++..|++||++|+++||++|.++||+|+|++++.+.+.+++. |+.|..++.. .. ..... ...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~-~~--~~~~~~~~~ 68 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIR-DS--ELATEDGKF 68 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------Ccceeecccc-CC--hhhhhhhhh
Confidence 46999999999999999999999999999999999999999999988 7777777532 10 00100 001
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCC
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVS 167 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
.. ...+.. ...........+.+++.+. .+|+++.|...+.+ .+++..++|++..............
T Consensus 69 ~~--~~~~~~-~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------- 134 (406)
T COG1819 69 AG--VKSFRR-LLQQFKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG-------- 134 (406)
T ss_pred hc--cchhHH-HhhhhhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc--------
Confidence 10 011111 2233334444555666666 99999999875555 7899999999876555332211110
Q ss_pred CCcccccCCC--CCcccccccccCcccCCCCCcchhHHHH-HHHHHhhhccCc---EEEEcchHHhhHHHHHHHH---hh
Q 010940 168 KFESFVVPGL--PHRIELIKAQLPEALNPAGSHVQDLTQV-RHNIRAAEQSAD---GIVVNTFEELEAEYVKEYK---RV 238 (497)
Q Consensus 168 ~~~~~~~pgl--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~s~~~le~~~~~~~~---~~ 238 (497)
...|.. ...+..+...++................ ..+......... ..+..+-+.++..+.+... ..
T Consensus 135 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (406)
T COG1819 135 ----LPLPPVGIAGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDR 210 (406)
T ss_pred ----cCcccccccccccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCC
Confidence 000100 0011111111111111101000000000 000000000000 0000000111111110000 11
Q ss_pred cCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCC
Q 010940 239 KGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQP 318 (497)
Q Consensus 239 ~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~ 318 (497)
++....++||+... ...++..|... .+++||+|+||.... .+.++.++++++.++.+
T Consensus 211 ~p~~~~~~~~~~~~--------------------~~~~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~ 267 (406)
T COG1819 211 LPFIGPYIGPLLGE--------------------AANELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDVR 267 (406)
T ss_pred CCCCcCcccccccc--------------------ccccCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcE
Confidence 22334445555211 23334444333 345999999999977 88899999999999999
Q ss_pred EEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccccc
Q 010940 319 FIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQ 398 (497)
Q Consensus 319 ~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ 398 (497)
||+.++. .+. +.. ..+.|+++..|+||.++|+++++ ||||||+|||+|||++|||+|++|...||
T Consensus 268 vi~~~~~-~~~-~~~-----------~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ 332 (406)
T COG1819 268 VIVSLGG-ARD-TLV-----------NVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQ 332 (406)
T ss_pred EEEeccc-ccc-ccc-----------cCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcch
Confidence 9999876 222 111 13489999999999999999998 99999999999999999999999999999
Q ss_pred cchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHH
Q 010940 399 FYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHR 478 (497)
Q Consensus 399 ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~ 478 (497)
+.||.|+ +++|+|+.++.+. ++++.|+++|+++|+| +.|+++++++++.++.+ +|. +
T Consensus 333 ~~nA~rv-e~~G~G~~l~~~~-------------l~~~~l~~av~~vL~~----~~~~~~~~~~~~~~~~~---~g~--~ 389 (406)
T COG1819 333 PLNAERV-EELGAGIALPFEE-------------LTEERLRAAVNEVLAD----DSYRRAAERLAEEFKEE---DGP--A 389 (406)
T ss_pred hHHHHHH-HHcCCceecCccc-------------CCHHHHHHHHHHHhcC----HHHHHHHHHHHHHhhhc---ccH--H
Confidence 9999999 6699999999877 9999999999999999 99999999999999977 663 4
Q ss_pred HHHHHHHHHHhhhc
Q 010940 479 NIEMLIEFVIQQTR 492 (497)
Q Consensus 479 ~~~~~~~~~~~~~~ 492 (497)
.+.++|+.+...+.
T Consensus 390 ~~a~~le~~~~~~~ 403 (406)
T COG1819 390 KAADLLEEFAREKK 403 (406)
T ss_pred HHHHHHHHHHhccc
Confidence 78888888766543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.6e-40 Score=345.01 Aligned_cols=405 Identities=30% Similarity=0.442 Sum_probs=246.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMD 88 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~ 88 (497)
..|++++++|++||++|++.||+.|+++||+||++++..+....... .... ....+....+++....++++...+...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSK-SIKKINPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccce-eeeeeecChHHhhhhhhhhccchHHHH
Confidence 56889999999999999999999999999999999988765543321 0000 000011111111111112222211100
Q ss_pred CCCChhHHHHHHHHH-HHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcC-CCeEEEccchHHHHHhhhhhhhccC
Q 010940 89 KLPSRDLIKNFFHAA-SMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFK-IPTILFDGMGCFACCCTHKLEISKV 166 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~ 166 (497)
.........+.... ..+......+......++|++|+|.+..+...++...+ ++...+.+.++........
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~------ 155 (496)
T KOG1192|consen 83 -LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP------ 155 (496)
T ss_pred -HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc------
Confidence 00001111111222 22223233333332224999999998666666776664 8888877776655433221
Q ss_pred CCCcccccCCCCCcccccccccCcccCCCCCcc-hhHHHHHH---------HHHh-h---h----ccCcEEEEcc-hHHh
Q 010940 167 SKFESFVVPGLPHRIELIKAQLPEALNPAGSHV-QDLTQVRH---------NIRA-A---E----QSADGIVVNT-FEEL 227 (497)
Q Consensus 167 ~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~~~-~---~----~~~~~~~~~s-~~~l 227 (497)
.....+|..... .......+..+..+.. ..+..+.. .... . . ...+.++.++ +..+
T Consensus 156 --~~~~~~p~~~~~---~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 230 (496)
T KOG1192|consen 156 --SPLSYVPSPFSL---SSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFL 230 (496)
T ss_pred --CcccccCcccCc---cccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEE
Confidence 112233322110 0001111111111000 00000000 0000 0 0 1111223333 5555
Q ss_pred hHHHHHHH-HhhcCCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCC--CeEEEEeeCCCc---CCC
Q 010940 228 EAEYVKEY-KRVKGDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEP--GSVIYACLGSIC---GLA 301 (497)
Q Consensus 228 e~~~~~~~-~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~V~vs~GS~~---~~~ 301 (497)
++.....+ ..+..+++++|||+..... ..+. +...+|++..+. +++|||||||+. .++
T Consensus 231 n~~~~~~~~~~~~~~~v~~IG~l~~~~~--------------~~~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp 294 (496)
T KOG1192|consen 231 NSNPLLDFEPRPLLPKVIPIGPLHVKDS--------------KQKS--PLPLEWLDILDESRHSVVYISFGSMVNSADLP 294 (496)
T ss_pred ccCcccCCCCCCCCCCceEECcEEecCc--------------cccc--cccHHHHHHHhhccCCeEEEECCcccccccCC
Confidence 54444334 3334689999999976533 1111 123445544433 379999999999 688
Q ss_pred HHhHHHHHHHHHhC-CCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHh-hhcCCccccccCCCchhH
Q 010940 302 TWQLLELGLGLEAS-SQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLL-LSHRAIGGFLTHCGWNST 379 (497)
Q Consensus 302 ~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~l-L~~~~~~~~I~HgG~gt~ 379 (497)
.++..+++.+++.+ +.+|+|++....... +++++.++ ...|+...+|+||.++ |.|+++++||||||+|||
T Consensus 295 ~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~------~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt 367 (496)
T KOG1192|consen 295 EEQKKELAKALESLQGVTFLWKYRPDDSIY------FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNST 367 (496)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecCCcchh------hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHH
Confidence 99999999999999 788999998754321 22333222 3468998899999998 699999999999999999
Q ss_pred HHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHH
Q 010940 380 LEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRA 459 (497)
Q Consensus 380 ~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a 459 (497)
+|++++|||+|++|+++||+.||+++++ .|.|..+.+.+ ++...+..++.+++++ ++|++++
T Consensus 368 ~E~~~~GvP~v~~Plf~DQ~~Na~~i~~-~g~~~v~~~~~-------------~~~~~~~~~~~~il~~----~~y~~~~ 429 (496)
T KOG1192|consen 368 LESIYSGVPMVCVPLFGDQPLNARLLVR-HGGGGVLDKRD-------------LVSEELLEAIKEILEN----EEYKEAA 429 (496)
T ss_pred HHHHhcCCceecCCccccchhHHHHHHh-CCCEEEEehhh-------------cCcHHHHHHHHHHHcC----hHHHHHH
Confidence 9999999999999999999999999955 77776676665 5555599999999998 9999999
Q ss_pred HHHHHHHHH
Q 010940 460 RQLGEIANR 468 (497)
Q Consensus 460 ~~~~~~~~~ 468 (497)
+++++..++
T Consensus 430 ~~l~~~~~~ 438 (496)
T KOG1192|consen 430 KRLSEILRD 438 (496)
T ss_pred HHHHHHHHc
Confidence 999998873
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.4e-25 Score=222.52 Aligned_cols=312 Identities=18% Similarity=0.197 Sum_probs=198.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKL 90 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~ 90 (497)
+|+|.+.++.||++|.++||++|.++||+|+|++.+...+. .. ....++.+..++.. ++. ..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~---~l----~~~~g~~~~~~~~~----~l~-------~~ 64 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK---TI----IEKENIPYYSISSG----KLR-------RY 64 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc---cc----CcccCCcEEEEecc----CcC-------CC
Confidence 79999999999999999999999999999999997754431 10 12226777777521 111 10
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC--cchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCCC
Q 010940 91 PSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL--PWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVSK 168 (497)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
.....+...+....... ....++++. +||+||+..-. ..+..+|+.+++|++..-.
T Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~------------------- 122 (352)
T PRK12446 65 FDLKNIKDPFLVMKGVM-DAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES------------------- 122 (352)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECC-------------------
Confidence 01111222222222222 233456777 99999987733 3456789999999987332
Q ss_pred CcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcC-CcEEEec
Q 010940 169 FESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKG-DKVWCIG 247 (497)
Q Consensus 169 ~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~-~~v~~vG 247 (497)
..+||+.+ ++..++... +..+|++- ...++ +++.++|
T Consensus 123 ---n~~~g~~n------------------------r~~~~~a~~-------v~~~f~~~--------~~~~~~~k~~~tG 160 (352)
T PRK12446 123 ---DMTPGLAN------------------------KIALRFASK-------IFVTFEEA--------AKHLPKEKVIYTG 160 (352)
T ss_pred ---CCCccHHH------------------------HHHHHhhCE-------EEEEccch--------hhhCCCCCeEEEC
Confidence 22334322 223322222 22334321 11232 5788999
Q ss_pred cCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCH-HhHHHHHHHHHhCCCCEEEEEeCC
Q 010940 248 PVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLAT-WQLLELGLGLEASSQPFIWVIRGG 326 (497)
Q Consensus 248 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~ 326 (497)
+..-..- .....+...+.+.-.+++++|+|..||...... +.+..++..+.. +.+++|++|.+
T Consensus 161 ~Pvr~~~---------------~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~ 224 (352)
T PRK12446 161 SPVREEV---------------LKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG 224 (352)
T ss_pred CcCCccc---------------ccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc
Confidence 7742211 000011111122222345699999999987443 334444544432 47889998865
Q ss_pred CCCCCccccccchhHHHHhCCCCeEecccc-c-hHHhhhcCCccccccCCCchhHHHHHhhCCceeecccc-----cccc
Q 010940 327 ERSQGLEKWIQEEGFEERTTGRGFIIRGWA-P-QVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLF-----AEQF 399 (497)
Q Consensus 327 ~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~-p-q~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~-----~DQ~ 399 (497)
... +... . ..++.+.+|+ + -.++|.++++ +|||||.+|++|++++|+|+|++|+. .||.
T Consensus 225 ~~~---------~~~~-~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~ 290 (352)
T PRK12446 225 NLD---------DSLQ-N--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQI 290 (352)
T ss_pred hHH---------HHHh-h--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHH
Confidence 311 1111 1 1355566787 4 3468999998 99999999999999999999999985 4899
Q ss_pred chHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 400 YNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 400 ~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
.||+.+ ++.|+|..+...+ ++++.|.++|.++++|
T Consensus 291 ~Na~~l-~~~g~~~~l~~~~-------------~~~~~l~~~l~~ll~~ 325 (352)
T PRK12446 291 LNAESF-ERQGYASVLYEED-------------VTVNSLIKHVEELSHN 325 (352)
T ss_pred HHHHHH-HHCCCEEEcchhc-------------CCHHHHHHHHHHHHcC
Confidence 999999 5499999998776 8999999999999987
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=4.4e-23 Score=202.30 Aligned_cols=326 Identities=21% Similarity=0.220 Sum_probs=204.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCC-eEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGI-KVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMD 88 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~ 88 (497)
++|+++..++.||+.|.++|+++|.++|+ +|.++.+....+.... ...++.++.|+.. ++... .
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~-------~~~~~~~~~I~~~----~~~~~----~ 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV-------KQYGIEFELIPSG----GLRRK----G 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec-------cccCceEEEEecc----ccccc----C
Confidence 47899999999999999999999999999 5888877655554332 2227888888632 11111 1
Q ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCC--CCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccC
Q 010940 89 KLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGK--NLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKV 166 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~--~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 166 (497)
. ...+...+.. -.......+++++. +||+||.-. .+..+..+|..+|||++.
T Consensus 66 ~---~~~~~~~~~~-~~~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i-------------------- 119 (357)
T COG0707 66 S---LKLLKAPFKL-LKGVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVII-------------------- 119 (357)
T ss_pred c---HHHHHHHHHH-HHHHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEE--------------------
Confidence 0 1111111111 11223355667777 999999855 335666678999999997
Q ss_pred CCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCCcEEEe
Q 010940 167 SKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKVWCI 246 (497)
Q Consensus 167 ~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~v 246 (497)
.+...+||+.. .+..+.... +..+|+..+. ..-+.+++++
T Consensus 120 --hEqn~~~G~an------------------------k~~~~~a~~-------V~~~f~~~~~-------~~~~~~~~~t 159 (357)
T COG0707 120 --HEQNAVPGLAN------------------------KILSKFAKK-------VASAFPKLEA-------GVKPENVVVT 159 (357)
T ss_pred --EecCCCcchhH------------------------HHhHHhhce-------eeeccccccc-------cCCCCceEEe
Confidence 34455566542 222222221 2233332110 0011357777
Q ss_pred ccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCC-HHhHHHHHHHHHhCCCCEEEEEeC
Q 010940 247 GPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLA-TWQLLELGLGLEASSQPFIWVIRG 325 (497)
Q Consensus 247 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~ 325 (497)
|-.....- .. .+..-.++.... .+++|+|..||+.... .+.+..++..+.. ...++++++.
T Consensus 160 G~Pvr~~~---------------~~-~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~ 221 (357)
T COG0707 160 GIPVRPEF---------------EE-LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGK 221 (357)
T ss_pred cCcccHHh---------------hc-cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCc
Confidence 74321110 01 111111111111 4559999999998643 2333334444433 4688888887
Q ss_pred CCCCCCccccccchhHHHHhCCCC-eEeccccchHH-hhhcCCccccccCCCchhHHHHHhhCCceeecccc----cccc
Q 010940 326 GERSQGLEKWIQEEGFEERTTGRG-FIIRGWAPQVL-LLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLF----AEQF 399 (497)
Q Consensus 326 ~~~~~~~~~~~lp~~~~~~~~~~n-v~v~~~~pq~~-lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~----~DQ~ 399 (497)
+.. +.........| +.+.+|..+.. +|..+++ +||++|.+|+.|++++|+|+|.+|.. .||.
T Consensus 222 ~~~----------~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~ 289 (357)
T COG0707 222 NDL----------EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQE 289 (357)
T ss_pred chH----------HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHH
Confidence 642 22333333344 77888988754 8888887 99999999999999999999999973 3899
Q ss_pred chHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHH
Q 010940 400 YNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRAR 460 (497)
Q Consensus 400 ~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~ 460 (497)
.||+.+ ++.|.|+.++..+ ++++++.+.|.++++|++....|+++++
T Consensus 290 ~NA~~l-~~~gaa~~i~~~~-------------lt~~~l~~~i~~l~~~~~~l~~m~~~a~ 336 (357)
T COG0707 290 YNAKFL-EKAGAALVIRQSE-------------LTPEKLAELILRLLSNPEKLKAMAENAK 336 (357)
T ss_pred HHHHHH-HhCCCEEEecccc-------------CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999 5599999999887 9999999999999997333333443333
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=2.1e-23 Score=205.73 Aligned_cols=306 Identities=20% Similarity=0.231 Sum_probs=189.4
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCC
Q 010940 10 LHFVLIPLM-SPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMD 88 (497)
Q Consensus 10 ~~il~~~~p-~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~ 88 (497)
|||+|...+ +.||+...++||++| |||+|+|++.....+.+... +.+..++ ++...... .
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~----------~~~~~~~------~~~~~~~~-~ 61 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR----------FPVREIP------GLGPIQEN-G 61 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc----------cCEEEcc------CceEeccC-C
Confidence 588887776 889999999999999 69999999987544333211 2344443 11111100 0
Q ss_pred CCCChhHHHHH---HHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhhhhhcc
Q 010940 89 KLPSRDLIKNF---FHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISK 165 (497)
Q Consensus 89 ~~~~~~~~~~~---~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (497)
........... ..........+.+++++. +||+||+|.. +.+..+|+..|||++.+........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~---------- 128 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLREF--RPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH---------- 128 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc----------
Confidence 11111111111 112233334455677777 9999999964 5567789999999998877643210
Q ss_pred CCCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhh--hccCcEEEEcchHHhhHHHHHHHHhhcCCcE
Q 010940 166 VSKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAA--EQSADGIVVNTFEELEAEYVKEYKRVKGDKV 243 (497)
Q Consensus 166 ~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v 243 (497)
+... .... . .+..+..+.... ....+..+.-++. .. .....++
T Consensus 129 ---------~~~~----~~~~---------~----~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~ 173 (318)
T PF13528_consen 129 ---------PNFW----LPWD---------Q----DFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRV 173 (318)
T ss_pred ---------ccCC----cchh---------h----hHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccccc
Confidence 0000 0000 0 012222222221 2223333333333 10 0111346
Q ss_pred EEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCC-CCEEEE
Q 010940 244 WCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASS-QPFIWV 322 (497)
Q Consensus 244 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~ 322 (497)
.++||+..... .+... .+++.|+|++|..... .++++++..+ ..+++.
T Consensus 174 ~~~~p~~~~~~-----------------------~~~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~ 222 (318)
T PF13528_consen 174 PFVGPIIRPEI-----------------------RELPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF 222 (318)
T ss_pred cccCchhcccc-----------------------cccCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE
Confidence 66777742211 00101 1234899999987543 5677787776 566655
Q ss_pred EeCCCCCCCccccccchhHHHHhCCCCeEecccc--chHHhhhcCCccccccCCCchhHHHHHhhCCceeeccc--cccc
Q 010940 323 IRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWA--PQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPL--FAEQ 398 (497)
Q Consensus 323 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~--pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~--~~DQ 398 (497)
+.... -+ ..+|+.+.+|. ...++|..+++ +|+|||.||++|++++|+|+|++|. ..+|
T Consensus 223 -g~~~~--------~~-------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ 284 (318)
T PF13528_consen 223 -GPNAA--------DP-------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQ 284 (318)
T ss_pred -cCCcc--------cc-------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchH
Confidence 54321 11 35899998876 34568988887 9999999999999999999999999 7899
Q ss_pred cchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHH
Q 010940 399 FYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKL 445 (497)
Q Consensus 399 ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v 445 (497)
..||+++ +++|+|+.+..++ ++++.|+++|+++
T Consensus 285 ~~~a~~l-~~~G~~~~~~~~~-------------~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 285 EYNARKL-EELGLGIVLSQED-------------LTPERLAEFLERL 317 (318)
T ss_pred HHHHHHH-HHCCCeEEccccc-------------CCHHHHHHHHhcC
Confidence 9999999 6699999998877 9999999999764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=2.7e-21 Score=190.56 Aligned_cols=122 Identities=21% Similarity=0.248 Sum_probs=88.9
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccc--hHHhhhcC
Q 010940 288 SVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAP--QVLLLSHR 365 (497)
Q Consensus 288 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p--q~~lL~~~ 365 (497)
+.|+|.+||... ..+++++++.+. +.+++..... ..+. ..+|+.+.+|.| ...+|..+
T Consensus 189 ~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~--------~~~~-----~~~~v~~~~~~~~~~~~~l~~a 248 (321)
T TIGR00661 189 DYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEV--------AKNS-----YNENVEIRRITTDNFKELIKNA 248 (321)
T ss_pred CcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCC--------Cccc-----cCCCEEEEECChHHHHHHHHhC
Confidence 467888887542 345777777653 3333332211 1111 137899889997 34577777
Q ss_pred CccccccCCCchhHHHHHhhCCceeeccccc--cccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHH
Q 010940 366 AIGGFLTHCGWNSTLEGVSAGVPLVTCPLFA--EQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIE 443 (497)
Q Consensus 366 ~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~--DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~ 443 (497)
++ +|||||.+|++||+++|+|++++|... ||..||+.+ ++.|+|+.++..+ + ++.+++.
T Consensus 249 d~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~~l~~~~-------------~---~~~~~~~ 309 (321)
T TIGR00661 249 EL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGIALEYKE-------------L---RLLEAIL 309 (321)
T ss_pred CE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEEEcChhh-------------H---HHHHHHH
Confidence 76 999999999999999999999999865 899999999 5599999998765 4 6677777
Q ss_pred HHHcC
Q 010940 444 KLMDR 448 (497)
Q Consensus 444 ~vl~~ 448 (497)
++++|
T Consensus 310 ~~~~~ 314 (321)
T TIGR00661 310 DIRNM 314 (321)
T ss_pred hcccc
Confidence 77777
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.81 E-value=2.8e-17 Score=164.76 Aligned_cols=313 Identities=16% Similarity=0.148 Sum_probs=184.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDK 89 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~ 89 (497)
|||+|+..+..||....+.||+.|.++||+|++++.+.... .+. ....+++++.++.+ ++..
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~-~~~------~~~~g~~~~~~~~~----~~~~------- 63 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME-ARL------VPKAGIEFHFIPSG----GLRR------- 63 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh-hhc------cccCCCcEEEEecc----CcCC-------
Confidence 58999999999999999999999999999999999764211 111 01126777777532 1110
Q ss_pred CCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC--cchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCC
Q 010940 90 LPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL--PWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVS 167 (497)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
......+... ...-.....+.+++++. +||+|++.... ..+..+++..++|++.....
T Consensus 64 ~~~~~~l~~~-~~~~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~----------------- 123 (357)
T PRK00726 64 KGSLANLKAP-FKLLKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN----------------- 123 (357)
T ss_pred CChHHHHHHH-HHHHHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-----------------
Confidence 0101111111 11122233456677777 99999999732 34455677789999852110
Q ss_pred CCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCCcEEEec
Q 010940 168 KFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKVWCIG 247 (497)
Q Consensus 168 ~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~vG 247 (497)
..++. ...+..+ .++.++. ..+.. . . ..-+.++.++|
T Consensus 124 -----~~~~~------------------------~~r~~~~------~~d~ii~-~~~~~---~-~---~~~~~~i~vi~ 160 (357)
T PRK00726 124 -----AVPGL------------------------ANKLLAR------FAKKVAT-AFPGA---F-P---EFFKPKAVVTG 160 (357)
T ss_pred -----CCccH------------------------HHHHHHH------HhchheE-Cchhh---h-h---ccCCCCEEEEC
Confidence 00000 1111111 1222222 22211 0 0 12236888888
Q ss_pred cCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCC--CEEEEEeC
Q 010940 248 PVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQ--PFIWVIRG 325 (497)
Q Consensus 248 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~--~~i~~~~~ 325 (497)
+....... .....-.+ +...+...+|++..|+... ......+.+++++... .+++.+|.
T Consensus 161 n~v~~~~~----------------~~~~~~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~ 221 (357)
T PRK00726 161 NPVREEIL----------------ALAAPPAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGK 221 (357)
T ss_pred CCCChHhh----------------cccchhhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCC
Confidence 66322110 00000011 1111223367666665432 1222223366655433 44556665
Q ss_pred CCCCCCccccccchhHHHHhC-CCCeEeccccc-hHHhhhcCCccccccCCCchhHHHHHhhCCceeeccc----ccccc
Q 010940 326 GERSQGLEKWIQEEGFEERTT-GRGFIIRGWAP-QVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPL----FAEQF 399 (497)
Q Consensus 326 ~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~p-q~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~----~~DQ~ 399 (497)
+.. +.+.+... .-++.+.+|+. ..++|..+++ +|+|+|.++++||+++|+|+|++|. ..||.
T Consensus 222 g~~----------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~ 289 (357)
T PRK00726 222 GDL----------EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQT 289 (357)
T ss_pred CcH----------HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHH
Confidence 432 22222222 22378889984 4679988888 9999999999999999999999997 36899
Q ss_pred chHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 400 YNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 400 ~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
.|+..+ .+.|.|+.+..++ +++++|.++|.++++|
T Consensus 290 ~~~~~i-~~~~~g~~~~~~~-------------~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 290 ANARAL-VDAGAALLIPQSD-------------LTPEKLAEKLLELLSD 324 (357)
T ss_pred HHHHHH-HHCCCEEEEEccc-------------CCHHHHHHHHHHHHcC
Confidence 999999 4499999998766 7899999999999998
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.77 E-value=1.3e-16 Score=159.44 Aligned_cols=314 Identities=18% Similarity=0.179 Sum_probs=183.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKL 90 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~ 90 (497)
+|++...++.||....+.||+.|.++||+|++++...... .. . ....++++..++.. +... .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~-~-----~~~~~~~~~~~~~~----~~~~-------~ 62 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-AR-L-----VPKAGIPLHTIPVG----GLRR-------K 62 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hh-c-----ccccCCceEEEEec----CcCC-------C
Confidence 5899999999999999999999999999999998754211 11 0 01125677777532 1100 0
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC--cchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCCC
Q 010940 91 PSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL--PWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVSK 168 (497)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
.....+...+. .-.....+.+++++. +||+|+++... ..+..+|...|+|++.....
T Consensus 63 ~~~~~~~~~~~-~~~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~------------------ 121 (350)
T cd03785 63 GSLKKLKAPFK-LLKGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN------------------ 121 (350)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC------------------
Confidence 00111111111 112223466677777 99999987632 34456788889998852110
Q ss_pred CcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCCcEEEecc
Q 010940 169 FESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKVWCIGP 248 (497)
Q Consensus 169 ~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~vGp 248 (497)
..+++ ...+.. ..++.++..+-...+. .-+.++.++|.
T Consensus 122 ----~~~~~------------------------~~~~~~------~~~~~vi~~s~~~~~~--------~~~~~~~~i~n 159 (350)
T cd03785 122 ----AVPGL------------------------ANRLLA------RFADRVALSFPETAKY--------FPKDKAVVTGN 159 (350)
T ss_pred ----CCccH------------------------HHHHHH------HhhCEEEEcchhhhhc--------CCCCcEEEECC
Confidence 00000 111111 1234444332221110 12357788886
Q ss_pred CcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCH-HhHHHHHHHHHhCCCCEEEEEeCCC
Q 010940 249 VSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLAT-WQLLELGLGLEASSQPFIWVIRGGE 327 (497)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~ 327 (497)
....... . .... ...+...+++.+|++..|+...... +.+..++..+...+..+++.++.+.
T Consensus 160 ~v~~~~~---------------~-~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~ 222 (350)
T cd03785 160 PVREEIL---------------A-LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD 222 (350)
T ss_pred CCchHHh---------------h-hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc
Confidence 5321110 0 0011 1122222233366666666543211 1222233334322344556666542
Q ss_pred CCCCccccccchhHHHHhC--CCCeEecccc-chHHhhhcCCccccccCCCchhHHHHHhhCCceeeccc----cccccc
Q 010940 328 RSQGLEKWIQEEGFEERTT--GRGFIIRGWA-PQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPL----FAEQFY 400 (497)
Q Consensus 328 ~~~~~~~~~lp~~~~~~~~--~~nv~v~~~~-pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~----~~DQ~~ 400 (497)
. +.+.+... ..|+.+.+|+ ....+|..+++ +|+++|.+|+.||+.+|+|+|++|. ..+|..
T Consensus 223 ~----------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~ 290 (350)
T cd03785 223 L----------EEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTA 290 (350)
T ss_pred H----------HHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHH
Confidence 1 22222111 4789999998 45668988887 9999999999999999999999986 357888
Q ss_pred hHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 401 NEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 401 na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
++..+.+ .|.|..++..+ .+++++.++|+++++|
T Consensus 291 ~~~~l~~-~g~g~~v~~~~-------------~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 291 NARALVK-AGAAVLIPQEE-------------LTPERLAAALLELLSD 324 (350)
T ss_pred hHHHHHh-CCCEEEEecCC-------------CCHHHHHHHHHHHhcC
Confidence 9999955 89999997654 6899999999999988
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.72 E-value=6.1e-15 Score=147.27 Aligned_cols=310 Identities=19% Similarity=0.189 Sum_probs=169.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDK 89 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~ 89 (497)
|||+|++.+..||+...+.||++|.++||+|++++.+.... . .. ....+++++.++.. .. ..
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~-~-~~-----~~~~g~~~~~i~~~----~~-------~~ 62 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE-K-RL-----VPKAGIEFYFIPVG----GL-------RR 62 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch-h-cc-----cccCCCceEEEecc----Cc-------CC
Confidence 38999999999999988899999999999999998643211 0 00 01126777777532 00 00
Q ss_pred CCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC--cchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCC
Q 010940 90 LPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL--PWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVS 167 (497)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
......+...+. .-.....+.+++++. +||+|++.... ..+..+++..++|++.....
T Consensus 63 ~~~~~~l~~~~~-~~~~~~~l~~~i~~~--~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~----------------- 122 (348)
T TIGR01133 63 KGSFRLIKTPLK-LLKAVFQARRILKKF--KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN----------------- 122 (348)
T ss_pred CChHHHHHHHHH-HHHHHHHHHHHHHhc--CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-----------------
Confidence 000111111111 122333466778887 99999987633 23444677889998742110
Q ss_pred CCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCCcEEEec
Q 010940 168 KFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKVWCIG 247 (497)
Q Consensus 168 ~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~vG 247 (497)
..++. ...+.. ...+.++.. +++.. ..+ ...+||
T Consensus 123 -----~~~~~------------------------~~~~~~------~~~d~ii~~-~~~~~--------~~~--~~~~i~ 156 (348)
T TIGR01133 123 -----AVPGL------------------------TNKLLS------RFAKKVLIS-FPGAK--------DHF--EAVLVG 156 (348)
T ss_pred -----CCccH------------------------HHHHHH------HHhCeeEEC-chhHh--------hcC--CceEEc
Confidence 00000 111111 123333332 22211 111 224555
Q ss_pred cCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHH---hCCCCEEEEEe
Q 010940 248 PVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLE---ASSQPFIWVIR 324 (497)
Q Consensus 248 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~ 324 (497)
........ ..+.. .+.+.-.+++.+|.+..|+... ......+.++++ ..+..+++..+
T Consensus 157 n~v~~~~~----------------~~~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g 217 (348)
T TIGR01133 157 NPVRQEIR----------------SLPVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTG 217 (348)
T ss_pred CCcCHHHh----------------cccch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECC
Confidence 43211100 00000 0112111223355444455442 221222334443 33445655444
Q ss_pred CCCCCCCccccccchhHHHHhCCCCe-Eecccc--chHHhhhcCCccccccCCCchhHHHHHhhCCceeecccc---ccc
Q 010940 325 GGERSQGLEKWIQEEGFEERTTGRGF-IIRGWA--PQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLF---AEQ 398 (497)
Q Consensus 325 ~~~~~~~~~~~~lp~~~~~~~~~~nv-~v~~~~--pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~---~DQ 398 (497)
.+.. +.++......++ .++.|. .-..+|..+++ +|+++|.+++.||+++|+|+|++|.. .+|
T Consensus 218 ~~~~----------~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~ 285 (348)
T TIGR01133 218 KNDL----------EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQ 285 (348)
T ss_pred cchH----------HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccch
Confidence 3321 222221221121 122333 45678988887 99999988999999999999999863 467
Q ss_pred cchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 399 FYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 399 ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
..|+..+ +..|.|..++..+ .++++|.++|.++++|
T Consensus 286 ~~~~~~i-~~~~~G~~~~~~~-------------~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 286 YYNAKFL-EDLGAGLVIRQKE-------------LLPEKLLEALLKLLLD 321 (348)
T ss_pred hhHHHHH-HHCCCEEEEeccc-------------CCHHHHHHHHHHHHcC
Confidence 8888888 5589999887755 6899999999999998
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.71 E-value=3.5e-15 Score=150.34 Aligned_cols=352 Identities=11% Similarity=0.030 Sum_probs=194.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDK 89 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~ 89 (497)
+||+|+..++.||+.|. +|+++|+++|++|.|++.... .++..+. ..++++..++.. |+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~-----~~~~~~~~l~v~----G~~-------- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC-----EVLYSMEELSVM----GLR-------- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC-----ccccChHHhhhc----cHH--------
Confidence 58999999999999999 999999999999999985522 2332210 002333333211 111
Q ss_pred CCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCC-CcchHH--HHHHcCCCeEEEccchHHHHHhhhhhhhccC
Q 010940 90 LPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKN-LPWTVN--SAIKFKIPTILFDGMGCFACCCTHKLEISKV 166 (497)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~-~~~~~~--~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 166 (497)
+.+..+. ........+.+++++. +||+||.-.. ...... .|+.+|||++.+.+...
T Consensus 66 ----~~l~~~~-~~~~~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~-------------- 124 (385)
T TIGR00215 66 ----EVLGRLG-RLLKIRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQV-------------- 124 (385)
T ss_pred ----HHHHHHH-HHHHHHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcH--------------
Confidence 1111111 1223334667777777 9999995443 222223 68889999997542210
Q ss_pred CCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCCcEEEe
Q 010940 167 SKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKVWCI 246 (497)
Q Consensus 167 ~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~v 246 (497)
+.|... -.+.+.+..+. ++.+++. +..++ .. .+-+..+|
T Consensus 125 ----------------waw~~~-------------~~r~l~~~~d~-------v~~~~~~-e~~~~---~~-~g~~~~~v 163 (385)
T TIGR00215 125 ----------------WAWRKW-------------RAKKIEKATDF-------LLAILPF-EKAFY---QK-KNVPCRFV 163 (385)
T ss_pred ----------------hhcCcc-------------hHHHHHHHHhH-------hhccCCC-cHHHH---Hh-cCCCEEEE
Confidence 000000 01122222221 1122322 22222 11 23466778
Q ss_pred ccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCEEE
Q 010940 247 GPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEAS-----SQPFIW 321 (497)
Q Consensus 247 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~ 321 (497)
|........ ..........+-+.-.+++++|.+..||....-......++++++.+ +.++++
T Consensus 164 GnPv~~~~~-------------~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi 230 (385)
T TIGR00215 164 GHPLLDAIP-------------LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVL 230 (385)
T ss_pred CCchhhhcc-------------ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEE
Confidence 855322210 00000111111122223345888888887653233444555554332 224544
Q ss_pred EEeCCCCCCCccccccchhHHHHhC-CCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeec----cccc
Q 010940 322 VIRGGERSQGLEKWIQEEGFEERTT-GRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTC----PLFA 396 (497)
Q Consensus 322 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~i----P~~~ 396 (497)
.......... + +.+..... ...+.+..+ ....+|..+++ +|+-+|..|+ |++++|+|+|++ |+..
T Consensus 231 ~~~~~~~~~~-----~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 231 PVVNFKRRLQ-----F-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred EeCCchhHHH-----H-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHH
Confidence 4332211100 0 11111111 122332222 33458888887 9999999887 999999999999 8632
Q ss_pred ---------cccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCC----chhHHHHHHHHHHH
Q 010940 397 ---------EQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRG----KQGEKRRKRARQLG 463 (497)
Q Consensus 397 ---------DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~----~~~~~~~~~a~~~~ 463 (497)
+|..|+..+++ .++...+...+ ++++.|.+++.++++|+ ++..++++..++++
T Consensus 301 ~~~~~~~~~~~~~~~nil~~-~~~~pel~q~~-------------~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 301 LIARRLVKTDYISLPNILAN-RLLVPELLQEE-------------CTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHHHHcCCeeeccHHhcC-CccchhhcCCC-------------CCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 27889999944 88888777665 99999999999999996 55666666666666
Q ss_pred HHHHHHhccCCChHHHHHHHH
Q 010940 464 EIANRAIGVGGSSHRNIEMLI 484 (497)
Q Consensus 464 ~~~~~a~~~gg~~~~~~~~~~ 484 (497)
+.+ .++|.+.+..+.++
T Consensus 367 ~~l----~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 367 QRI----YCNADSERAAQAVL 383 (385)
T ss_pred HHh----cCCCHHHHHHHHHh
Confidence 665 34566655554443
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.62 E-value=3.9e-14 Score=132.75 Aligned_cols=339 Identities=16% Similarity=0.160 Sum_probs=193.7
Q ss_pred CCCcEEEEEcCC--CccCHHHHHHHHHHHHHC--CCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccC-CCC
Q 010940 7 AHQLHFVLIPLM--SPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVES-GLP 81 (497)
Q Consensus 7 ~~~~~il~~~~p--~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~-~~~ 81 (497)
++.+||+|++.- +-||+...+.||++|.+. |.+|++++...-...+. ...|++|+.+|.-...+ |..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~--------~~~gVd~V~LPsl~k~~~G~~ 78 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP--------GPAGVDFVKLPSLIKGDNGEY 78 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC--------CcccCceEecCceEecCCCce
Confidence 456799999984 679999999999999998 99999998665443332 33489999987332211 111
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHh-hHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHHHHHhhhh
Q 010940 82 QGCENMDKLPSRDLIKNFFHAASML-KQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCFACCCTHK 160 (497)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 160 (497)
.. ..... + ......+ .+.+...++.. +||++|+|.+ +.+.. -+.+ | ...+
T Consensus 79 ~~----~d~~~-~-----l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~-P~Glr-~EL~--p-------------tL~y 129 (400)
T COG4671 79 GL----VDLDG-D-----LEETKKLRSQLILSTAETF--KPDIFIVDKF-PFGLR-FELL--P-------------TLEY 129 (400)
T ss_pred ee----eecCC-C-----HHHHHHHHHHHHHHHHHhc--CCCEEEEecc-ccchh-hhhh--H-------------HHHH
Confidence 11 01110 1 1222222 33466666666 9999999986 44421 1110 0 1111
Q ss_pred hhhccCCCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHH-HHhhc
Q 010940 161 LEISKVSKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKE-YKRVK 239 (497)
Q Consensus 161 ~~~~~~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~-~~~~~ 239 (497)
+. ...+..+-++. ..++.+......+.....+ ..++++. |.+++..-+++..+...+ .....
T Consensus 130 l~-----~~~t~~vL~lr-----~i~D~p~~~~~~w~~~~~~-~~I~r~y------D~V~v~GdP~f~d~~~~~~~~~~i 192 (400)
T COG4671 130 LK-----TTGTRLVLGLR-----SIRDIPQELEADWRRAETV-RLINRFY------DLVLVYGDPDFYDPLTEFPFAPAI 192 (400)
T ss_pred Hh-----hcCCcceeehH-----hhhhchhhhccchhhhHHH-HHHHHhh------eEEEEecCccccChhhcCCccHhh
Confidence 11 00111111221 1122222222211111111 2222222 233333222222111000 01122
Q ss_pred CCcEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHh-CCCC
Q 010940 240 GDKVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEA-SSQP 318 (497)
Q Consensus 240 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-~~~~ 318 (497)
..++.|+|.+.-+.++. ..+.. | . +++-.|+||-|--.. -.+.....+.|-.. .+.+
T Consensus 193 ~~k~~ytG~vq~~~~~~----------------~~p~~--~--~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~ 250 (400)
T COG4671 193 RAKMRYTGFVQRSLPHL----------------PLPPH--E--A-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLN 250 (400)
T ss_pred hhheeEeEEeeccCcCC----------------CCCCc--C--C-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCC
Confidence 36899999983211110 00000 1 0 233378888875442 24555555555433 3333
Q ss_pred --EEEEEeCCCCCCCccccccchhHHH-----HhCCCCeEeccccch-HHhhhcCCccccccCCCchhHHHHHhhCCcee
Q 010940 319 --FIWVIRGGERSQGLEKWIQEEGFEE-----RTTGRGFIIRGWAPQ-VLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLV 390 (497)
Q Consensus 319 --~i~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~nv~v~~~~pq-~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v 390 (497)
.++.+|+. +|..... ..+.+++.+..|-.+ ..++..++. +|+-||+||++|-|.+|||.+
T Consensus 251 ~~~~ivtGP~----------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aL 318 (400)
T COG4671 251 HKWLIVTGPF----------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPAL 318 (400)
T ss_pred cceEEEeCCC----------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceE
Confidence 55566654 6653322 123488999999766 558877887 999999999999999999999
Q ss_pred eccccc---cccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHc
Q 010940 391 TCPLFA---EQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMD 447 (497)
Q Consensus 391 ~iP~~~---DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 447 (497)
+||... +|..-|.|+ +++|+--.+-+++ ++++.++++|...++
T Consensus 319 ivPr~~p~eEQliRA~Rl-~~LGL~dvL~pe~-------------lt~~~La~al~~~l~ 364 (400)
T COG4671 319 IVPRAAPREEQLIRAQRL-EELGLVDVLLPEN-------------LTPQNLADALKAALA 364 (400)
T ss_pred EeccCCCcHHHHHHHHHH-HhcCcceeeCccc-------------CChHHHHHHHHhccc
Confidence 999853 899999999 6699998888877 999999999999887
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.61 E-value=1.9e-14 Score=138.45 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=78.1
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhC--CCCEEEEEeCCCCCCCccccccchhHHHHh-CCCCeEeccccchH-Hhhh
Q 010940 288 SVIYACLGSICGLATWQLLELGLGLEAS--SQPFIWVIRGGERSQGLEKWIQEEGFEERT-TGRGFIIRGWAPQV-LLLS 363 (497)
Q Consensus 288 ~~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~-~lL~ 363 (497)
+.|+|++|..-... ....++++++.. +.++.+++|.+... .+.+++.. ..+|+.+..++++. .+|.
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~~--------~~~l~~~~~~~~~i~~~~~~~~m~~lm~ 240 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNPN--------LDELKKFAKEYPNIILFIDVENMAELMN 240 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCcC--------HHHHHHHHHhCCCEEEEeCHHHHHHHHH
Confidence 47899999655322 345567777654 45777888765431 13333221 24689999999986 6999
Q ss_pred cCCccccccCCCchhHHHHHhhCCceeeccccccccchHHH
Q 010940 364 HRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKL 404 (497)
Q Consensus 364 ~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~ 404 (497)
.+++ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 241 ~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 241 EADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9998 999999 9999999999999999999999999875
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.58 E-value=1.5e-12 Score=131.66 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=93.7
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhC-CCCEEEEEeCCCCCCCccccccchhHHHHh--CCCCeEeccccchH-Hhh
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGLEAS-SQPFIWVIRGGERSQGLEKWIQEEGFEERT--TGRGFIIRGWAPQV-LLL 362 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~~pq~-~lL 362 (497)
+++|++..|+.... ..+..+++++... +.++++..+.+.. +-+.+++.. ...|+.+.+|+++. .++
T Consensus 202 ~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~--------~~~~l~~~~~~~~~~v~~~g~~~~~~~l~ 271 (380)
T PRK13609 202 KKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA--------LKQSLEDLQETNPDALKVFGYVENIDELF 271 (380)
T ss_pred CcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH--------HHHHHHHHHhcCCCcEEEEechhhHHHHH
Confidence 44787777877532 2345677777654 4566666554321 112222211 22589999999874 699
Q ss_pred hcCCccccccCCCchhHHHHHhhCCceeec-cccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHH
Q 010940 363 SHRAIGGFLTHCGWNSTLEGVSAGVPLVTC-PLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEA 441 (497)
Q Consensus 363 ~~~~~~~~I~HgG~gt~~eal~~GvP~v~i-P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 441 (497)
..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+.. -+.+++.++
T Consensus 272 ~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~-----------------~~~~~l~~~ 331 (380)
T PRK13609 272 RVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI-----------------RDDEEVFAK 331 (380)
T ss_pred HhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE-----------------CCHHHHHHH
Confidence 88887 99999988999999999999985 6666778888888 558888753 357899999
Q ss_pred HHHHHcC
Q 010940 442 IEKLMDR 448 (497)
Q Consensus 442 i~~vl~~ 448 (497)
|.++++|
T Consensus 332 i~~ll~~ 338 (380)
T PRK13609 332 TEALLQD 338 (380)
T ss_pred HHHHHCC
Confidence 9999998
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.57 E-value=5.4e-13 Score=134.92 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=65.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDK 89 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~ 89 (497)
|||+|+..++.||+.|.+ ++++|+++++++.++..... .++... ...++.++.++.. ++
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~~~----g~--------- 60 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG-----CESLFDMEELAVM----GL--------- 60 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC-----CccccCHHHhhhc----cH---------
Confidence 589999999999999999 99999998888887764321 222220 0002222222210 00
Q ss_pred CCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCC-Ccch--HHHHHHcCCCeEEE
Q 010940 90 LPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKN-LPWT--VNSAIKFKIPTILF 147 (497)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~-~~~~--~~~A~~lgiP~v~~ 147 (497)
...+..+ .........+.+++++. +||+|++-.. ..+. ...+.+.|||++.+
T Consensus 61 ---~~~~~~~-~~~~~~~~~~~~~l~~~--kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 61 ---VEVLPRL-PRLLKIRRRLKRRLLAE--PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred ---HHHHHHH-HHHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 0111111 11223344577778888 9999986432 2233 33467789998864
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.46 E-value=3.7e-11 Score=121.73 Aligned_cols=132 Identities=12% Similarity=0.201 Sum_probs=93.5
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHH-HhC-CCCEEEEEeCCCCCCCccccccchhHHHHh-CCCCeEeccccchH-Hhh
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGL-EAS-SQPFIWVIRGGERSQGLEKWIQEEGFEERT-TGRGFIIRGWAPQV-LLL 362 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al-~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~-~lL 362 (497)
+++|+++.|+... ...+..+++++ +.. +.+++++.+.+.. +-+.+.+.. ..+++.+.+|+.+. .++
T Consensus 202 ~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~--------l~~~l~~~~~~~~~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 202 KQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE--------LKRSLTAKFKSNENVLILGYTKHMNEWM 271 (391)
T ss_pred CCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH--------HHHHHHHHhccCCCeEEEeccchHHHHH
Confidence 4588888898763 13344455554 322 3466666654321 112222222 23578888999764 589
Q ss_pred hcCCccccccCCCchhHHHHHhhCCceeec-cccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHH
Q 010940 363 SHRAIGGFLTHCGWNSTLEGVSAGVPLVTC-PLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEA 441 (497)
Q Consensus 363 ~~~~~~~~I~HgG~gt~~eal~~GvP~v~i-P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 441 (497)
..+++ +|+..|..|+.||+++|+|+|++ |..+.|..|+..+ ++.|+|+.. -+.+++.++
T Consensus 272 ~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~-----------------~~~~~l~~~ 331 (391)
T PRK13608 272 ASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA-----------------DTPEEAIKI 331 (391)
T ss_pred HhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe-----------------CCHHHHHHH
Confidence 88888 99988888999999999999998 6666677899988 559999764 257889999
Q ss_pred HHHHHcC
Q 010940 442 IEKLMDR 448 (497)
Q Consensus 442 i~~vl~~ 448 (497)
|.++++|
T Consensus 332 i~~ll~~ 338 (391)
T PRK13608 332 VASLTNG 338 (391)
T ss_pred HHHHhcC
Confidence 9999998
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.44 E-value=7.2e-15 Score=130.58 Aligned_cols=136 Identities=19% Similarity=0.218 Sum_probs=96.7
Q ss_pred EEEEeeCCCcCCC-HHhHHHHHHHHHh--CCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccc-hHHhhhc
Q 010940 289 VIYACLGSICGLA-TWQLLELGLGLEA--SSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAP-QVLLLSH 364 (497)
Q Consensus 289 ~V~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q~~lL~~ 364 (497)
+|+|+.||..... .+.+..++..+.. ...++++++|...... ....+. ....|+.+.+|.+ ...++..
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~------~~~~~~--~~~~~v~~~~~~~~m~~~m~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEE------LKIKVE--NFNPNVKVFGFVDNMAELMAA 72 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHH------HCCCHC--CTTCCCEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHH------HHHHHh--ccCCcEEEEechhhHHHHHHH
Confidence 5899999887521 1122223333322 2478999988763321 111110 0126899999999 7789999
Q ss_pred CCccccccCCCchhHHHHHhhCCceeeccccc----cccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHH
Q 010940 365 RAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFA----EQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKE 440 (497)
Q Consensus 365 ~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~----DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (497)
+++ +|||||.||++|++.+|+|+|++|... +|..||..+++ .|+|+.+.... .+++.|.+
T Consensus 73 aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~-------------~~~~~L~~ 136 (167)
T PF04101_consen 73 ADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESE-------------LNPEELAE 136 (167)
T ss_dssp HSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC--------------SCCCHHH
T ss_pred cCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCccc-------------CCHHHHHH
Confidence 998 999999999999999999999999988 99999999944 99999988766 77899999
Q ss_pred HHHHHHcC
Q 010940 441 AIEKLMDR 448 (497)
Q Consensus 441 ai~~vl~~ 448 (497)
+|.+++++
T Consensus 137 ~i~~l~~~ 144 (167)
T PF04101_consen 137 AIEELLSD 144 (167)
T ss_dssp HHHCHCCC
T ss_pred HHHHHHcC
Confidence 99999997
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.39 E-value=1.9e-10 Score=116.36 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=90.7
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHh---------CCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEecccc
Q 010940 286 PGSVIYACLGSICGLATWQLLELGLGLEA---------SSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWA 356 (497)
Q Consensus 286 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~---------~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~ 356 (497)
++++|++..|+..... +..+++++.. .+..+++.+|.+.. +-+.+.+.....++.+.+|+
T Consensus 205 ~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~--------~~~~L~~~~~~~~v~~~G~~ 273 (382)
T PLN02605 205 DLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRNKK--------LQSKLESRDWKIPVKVRGFV 273 (382)
T ss_pred CCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCCHH--------HHHHHHhhcccCCeEEEecc
Confidence 3457777777655322 2333444432 23456677765421 11222222123568888999
Q ss_pred ch-HHhhhcCCccccccCCCchhHHHHHhhCCceeecccccccc-chHHHHHHHHcceEEeccccccccccccccccccC
Q 010940 357 PQ-VLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQF-YNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIK 434 (497)
Q Consensus 357 pq-~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~-~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~ 434 (497)
++ ..+|..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+. +.|.|+.+ -+
T Consensus 274 ~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~-----------------~~ 333 (382)
T PLN02605 274 TNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS-----------------ES 333 (382)
T ss_pred ccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec-----------------CC
Confidence 86 448888888 999999999999999999999998777775 6888884 48998754 25
Q ss_pred HHHHHHHHHHHHcC
Q 010940 435 REKVKEAIEKLMDR 448 (497)
Q Consensus 435 ~~~l~~ai~~vl~~ 448 (497)
+++|.++|.++++|
T Consensus 334 ~~~la~~i~~ll~~ 347 (382)
T PLN02605 334 PKEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHHcC
Confidence 89999999999986
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.39 E-value=2.1e-10 Score=115.89 Aligned_cols=133 Identities=19% Similarity=0.086 Sum_probs=88.9
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhC----CCCEEEEEeCCCCCCCccccccchhHHHHhC----------------
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGLEAS----SQPFIWVIRGGERSQGLEKWIQEEGFEERTT---------------- 346 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~---------------- 346 (497)
+++|.+--||-.......+..++++++.+ +..|++.+.++... +.+.+...
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~---------~~~~~~l~~~g~~~~~~~~~~~~~ 275 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL---------EKLQAILEDLGWQLEGSSEDQTSL 275 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH---------HHHHHHHHhcCceecCCccccchh
Confidence 34888888988653334445566666543 45777777443321 11211111
Q ss_pred --CCCeEeccccc-hHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHH----cceEEecccc
Q 010940 347 --GRGFIIRGWAP-QVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVL----GIGVSVGIEA 419 (497)
Q Consensus 347 --~~nv~v~~~~p-q~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~----G~G~~l~~~~ 419 (497)
.+++.+..+.. -..++..+++ +|+-+|..| .|++..|+|+|++|.-..|. |+... ++. |.++.+..
T Consensus 276 ~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~~-- 348 (396)
T TIGR03492 276 FQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLAS-- 348 (396)
T ss_pred hccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecCC--
Confidence 12345545543 3568988888 999999766 99999999999999766676 88766 533 66666654
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcC
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
.+.+.|.+++.++++|
T Consensus 349 -------------~~~~~l~~~l~~ll~d 364 (396)
T TIGR03492 349 -------------KNPEQAAQVVRQLLAD 364 (396)
T ss_pred -------------CCHHHHHHHHHHHHcC
Confidence 3468999999999998
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.37 E-value=1.1e-09 Score=113.76 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=89.4
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHH---hhhcC
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVL---LLSHR 365 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~---lL~~~ 365 (497)
.+++..|++.. ...+..++++++..+.--++.+|.+.. .+.++......++.+.+++++.+ ++..+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG~G~~---------~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVGDGPY---------REELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEeCChH---------HHHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 45566687653 234555777777664333444554322 13444444456899999998654 77778
Q ss_pred CccccccCCC----chhHHHHHhhCCceeeccccccccchHHHHHHH---HcceEEeccccccccccccccccccCHHHH
Q 010940 366 AIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQV---LGIGVSVGIEAAVTWGLEDKSGLVIKREKV 438 (497)
Q Consensus 366 ~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~---~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 438 (497)
++ +|.-.. ..++.||+++|+|+|+.... .....+ +. -+.|..++.. +.+++
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~~---------------d~~~l 390 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTPG---------------DVDDC 390 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCCC---------------CHHHH
Confidence 87 775433 34789999999999986532 233333 53 4678777653 58899
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHH
Q 010940 439 KEAIEKLMDRGKQGEKRRKRARQL 462 (497)
Q Consensus 439 ~~ai~~vl~~~~~~~~~~~~a~~~ 462 (497)
.++|.++++|++....+.+++++.
T Consensus 391 a~~i~~ll~~~~~~~~~~~~a~~~ 414 (465)
T PLN02871 391 VEKLETLLADPELRERMGAAAREE 414 (465)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999999844444455555543
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.35 E-value=5.4e-13 Score=114.66 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=80.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCC
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLP 91 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~ 91 (497)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. |++|..++.+ ...........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~------~~~~~~~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD------SRLPRSLEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC------GGGGHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC------cCcCcccchhh
Confidence 78999999999999999999999999999999999999988777 8999998632 00000000000
Q ss_pred ChhHHHHHHHHHHHhhHHHHHHHhhc----C--CCCcEEEeCCCCcchHHHHHHcCCCeEEEccchH
Q 010940 92 SRDLIKNFFHAASMLKQPFEQLFDKL----H--PRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGC 152 (497)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~ll~~~----~--~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 152 (497)
..................+.+...+. . ..+|+++++.....+..+|++++||++.....+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 00001111111122222222222111 0 2678888888777888899999999999777654
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.27 E-value=1.4e-08 Score=100.99 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=83.4
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhC---CCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHH---h
Q 010940 288 SVIYACLGSICGLATWQLLELGLGLEAS---SQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVL---L 361 (497)
Q Consensus 288 ~~V~vs~GS~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~---l 361 (497)
..+++..|++... .....++++++.+ +..++ .+|...... ..........++.+.+++++.+ +
T Consensus 191 ~~~i~~~G~~~~~--k~~~~li~~~~~l~~~~~~l~-i~G~~~~~~--------~~~~~~~~~~~v~~~g~~~~~~~~~~ 259 (359)
T cd03823 191 RLRFGFIGQLTPH--KGVDLLLEAFKRLPRGDIELV-IVGNGLELE--------EESYELEGDPRVEFLGAYPQEEIDDF 259 (359)
T ss_pred ceEEEEEecCccc--cCHHHHHHHHHHHHhcCcEEE-EEcCchhhh--------HHHHhhcCCCeEEEeCCCCHHHHHHH
Confidence 3667777876542 2233344554433 34443 344332211 1100112357899999997655 5
Q ss_pred hhcCCcccccc----CCCc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHH
Q 010940 362 LSHRAIGGFLT----HCGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKRE 436 (497)
Q Consensus 362 L~~~~~~~~I~----HgG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 436 (497)
+..+++ +|. ..|. .++.||+++|+|+|+.+. ..+...+ +..+.|..... -+.+
T Consensus 260 ~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~---------------~d~~ 317 (359)
T cd03823 260 YAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPP---------------GDAE 317 (359)
T ss_pred HHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECC---------------CCHH
Confidence 888887 553 2333 479999999999998653 4455566 53446877765 3579
Q ss_pred HHHHHHHHHHcCCchhHHHHHHH
Q 010940 437 KVKEAIEKLMDRGKQGEKRRKRA 459 (497)
Q Consensus 437 ~l~~ai~~vl~~~~~~~~~~~~a 459 (497)
++.++|.++++|++....+++++
T Consensus 318 ~l~~~i~~l~~~~~~~~~~~~~~ 340 (359)
T cd03823 318 DLAAALERLIDDPDLLERLRAGI 340 (359)
T ss_pred HHHHHHHHHHhChHHHHHHHHhH
Confidence 99999999999843333333333
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.27 E-value=1.4e-08 Score=101.10 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=68.4
Q ss_pred CCCCeEeccccchHH---hhhcCCccccccCCC----chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccc
Q 010940 346 TGRGFIIRGWAPQVL---LLSHRAIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIE 418 (497)
Q Consensus 346 ~~~nv~v~~~~pq~~---lL~~~~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~ 418 (497)
..+|+.+.+|+++.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+ +..+.|...+.
T Consensus 245 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i-~~~~~g~~~~~- 316 (364)
T cd03814 245 RYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIV-TDGENGLLVEP- 316 (364)
T ss_pred cCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhh-cCCcceEEcCC-
Confidence 457899999998765 7888887 776654 37899999999999987644 345555 54688887765
Q ss_pred cccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010940 419 AAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQ 461 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 461 (497)
-+.+++.++|.++++|++...++.+++++
T Consensus 317 --------------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~ 345 (364)
T cd03814 317 --------------GDAEAFAAALAALLADPELRRRMAARARA 345 (364)
T ss_pred --------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 45788999999999984433344444433
No 48
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.23 E-value=1.5e-08 Score=101.20 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=68.1
Q ss_pred CCCeEeccccchHH---hhhcCCccccccCC----CchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccc
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFLTHC----GWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I~Hg----G~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
.+|+.+.+++|+.+ ++..+++ +|..+ ...++.||+++|+|+|+.. ....+..+ +..+.|..++..+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i-~~~~~g~~~~~~~ 330 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLV-ADGENGFLFPPGD 330 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhhe-ecCceeEEeCCCC
Confidence 57899999998765 6778887 55333 3468999999999999864 34455555 5356787776533
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEI 465 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~ 465 (497)
. ++.++|.++++|++....+.+++++..+.
T Consensus 331 ---------------~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 331 ---------------E-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred ---------------H-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2 89999999999854444555555555544
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.23 E-value=1.6e-08 Score=101.34 Aligned_cols=145 Identities=20% Similarity=0.196 Sum_probs=87.8
Q ss_pred eEEEEeeCCCcC-CCHHhHHHHHHHHHhC-CCCEEEEEeCCCCCCCccccccchhHH---HHhCCCCeEeccccchHH--
Q 010940 288 SVIYACLGSICG-LATWQLLELGLGLEAS-SQPFIWVIRGGERSQGLEKWIQEEGFE---ERTTGRGFIIRGWAPQVL-- 360 (497)
Q Consensus 288 ~~V~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~---~~~~~~nv~v~~~~pq~~-- 360 (497)
..+++..|+... ...+.+...+..+... +..++ .+|.+... +.+. .....+|+.+.+++++..
T Consensus 220 ~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~-i~G~~~~~---------~~~~~~~~~~~~~~v~~~g~~~~~~~~ 289 (394)
T cd03794 220 KFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFL-IVGDGPEK---------EELKELAKALGLDNVTFLGRVPKEELP 289 (394)
T ss_pred cEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEE-EeCCcccH---------HHHHHHHHHcCCCcEEEeCCCChHHHH
Confidence 367777888764 2234444444444333 33433 34433221 2222 233457899999998655
Q ss_pred -hhhcCCccccccCCC---------chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccc
Q 010940 361 -LLSHRAIGGFLTHCG---------WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSG 430 (497)
Q Consensus 361 -lL~~~~~~~~I~HgG---------~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~ 430 (497)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+ ...+.|..++.
T Consensus 290 ~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~~~~------------- 349 (394)
T cd03794 290 ELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLVVPP------------- 349 (394)
T ss_pred HHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceEeCC-------------
Confidence 6777887 553322 234799999999999987655443 23 32367776655
Q ss_pred cccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 010940 431 LVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGE 464 (497)
Q Consensus 431 ~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~ 464 (497)
-+.+++.++|.++++|++....+++++++...
T Consensus 350 --~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 350 --GDPEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred --CCHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 35889999999999885555555555555444
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.20 E-value=1.1e-07 Score=96.83 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=64.6
Q ss_pred CCCeEeccccchHH---hhhcCCccccccC-CCc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFLTH-CGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I~H-gG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
.+++.+.+++|+.+ +|..+++-++.+. .|. .++.||+++|+|+|+. |.......+ +.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i-~~~~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVI-TDGENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhc-ccCCceEEcCC----
Confidence 47899999999765 5677887333332 232 4899999999999986 344555555 42346776655
Q ss_pred ccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010940 422 TWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQ 461 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 461 (497)
-+++++.++|.++++|++...++.+++++
T Consensus 351 -----------~d~~~la~~i~~ll~~~~~~~~l~~~ar~ 379 (396)
T cd03818 351 -----------FDPDALAAAVIELLDDPARRARLRRAARR 379 (396)
T ss_pred -----------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 46899999999999984333344444443
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.15 E-value=1.1e-07 Score=96.57 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=65.5
Q ss_pred CCCeEeccccchHH---hhhcCCccccccCC---C-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccc
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFLTHC---G-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I~Hg---G-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
..|+.+.+|+|+.+ ++..+++ +++.+ | ..++.||+++|+|+|+... ......+ +..+.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~----~~~~e~i-~~~~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAV----GGPRDIV-VDGVTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCC----CCHHHHc-cCCCCeEEeCC--
Confidence 47899999999766 5777887 66432 2 3589999999999997653 3344455 54568887765
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQ 461 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 461 (497)
-+.+++.++|.++++|++....+.+++++
T Consensus 353 -------------~~~~~l~~~i~~l~~~~~~~~~~~~~a~~ 381 (398)
T cd03800 353 -------------RDPEALAAALRRLLTDPALRRRLSRAGLR 381 (398)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 35899999999999983333334444433
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.15 E-value=6.6e-08 Score=95.64 Aligned_cols=329 Identities=14% Similarity=0.118 Sum_probs=166.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKL 90 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~ 90 (497)
||++++....|+......++++|.++||+|++++........ ....++.+..++.... ..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~------------~~ 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE--------LEALGVKVIPIPLDRR------------GI 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc--------cccCCceEEecccccc------------cc
Confidence 477777778899999999999999999999999977554420 1222667666652210 00
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCc--chHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCCC
Q 010940 91 PSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLP--WTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVSK 168 (497)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
.....+ . ....+.++++.. +||+|++..... .+..+++..+.|.+..........
T Consensus 61 ~~~~~~----~----~~~~~~~~~~~~--~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------- 117 (359)
T cd03808 61 NPFKDL----K----ALLRLYRLLRKE--RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV------------- 117 (359)
T ss_pred ChHhHH----H----HHHHHHHHHHhc--CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh-------------
Confidence 000111 1 112345566666 999999886443 233344435555554333211000
Q ss_pred CcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhc-C--CcEEE
Q 010940 169 FESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVK-G--DKVWC 245 (497)
Q Consensus 169 ~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~-~--~~v~~ 245 (497)
. ... . . .. . ......+ .....++.++..+-...+. +.... . .....
T Consensus 118 ---~----~~~-------~---~---~~---~-~~~~~~~--~~~~~~d~ii~~s~~~~~~-----~~~~~~~~~~~~~~ 166 (359)
T cd03808 118 ---F----TSG-------G---L---KR---R-LYLLLER--LALRFTDKVIFQNEDDRDL-----ALKLGIIKKKKTVL 166 (359)
T ss_pred ---h----ccc-------h---h---HH---H-HHHHHHH--HHHhhccEEEEcCHHHHHH-----HHHhcCCCcCceEE
Confidence 0 000 0 0 00 0 1111111 1223446666655443221 11211 1 22333
Q ss_pred eccCcCCCccchhhhhhccCCCCCCCcCcchhcccccCCCCCeEEEEeeCCCcCC-CHHhHHHHHHHHHhC--CCCEEEE
Q 010940 246 IGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKWLDSWEPGSVIYACLGSICGL-ATWQLLELGLGLEAS--SQPFIWV 322 (497)
Q Consensus 246 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~i~~ 322 (497)
+.|....... ....... ..+++.+++..|++... ..+.+...+..+.+. +..++ .
T Consensus 167 ~~~~~~~~~~--------------~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~-i 224 (359)
T cd03808 167 IPGSGVDLDR--------------FSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLL-L 224 (359)
T ss_pred ecCCCCChhh--------------cCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEE-E
Confidence 3333222110 0000000 12233677788887542 234444444444332 23333 3
Q ss_pred EeCCCCCCCccccccchh-HHHHhCCCCeEeccccch-HHhhhcCCccccccCCC----chhHHHHHhhCCceeeccccc
Q 010940 323 IRGGERSQGLEKWIQEEG-FEERTTGRGFIIRGWAPQ-VLLLSHRAIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFA 396 (497)
Q Consensus 323 ~~~~~~~~~~~~~~lp~~-~~~~~~~~nv~v~~~~pq-~~lL~~~~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~ 396 (497)
.+.+...... ... ........++.+.++..+ ..++..+++ +|..+. .+++.||+++|+|+|+.+..
T Consensus 225 ~G~~~~~~~~-----~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~- 296 (359)
T cd03808 225 VGDGDEENPA-----AILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP- 296 (359)
T ss_pred EcCCCcchhh-----HHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC-
Confidence 3433221100 000 112223467888777543 458888887 665432 57899999999999986543
Q ss_pred cccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 010940 397 EQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQL 462 (497)
Q Consensus 397 DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 462 (497)
.+...+ +..+.|..++. -+++++.++|.+++.|++....+.+++++.
T Consensus 297 ---~~~~~i-~~~~~g~~~~~---------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 297 ---GCREAV-IDGVNGFLVPP---------------GDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred ---Cchhhh-hcCcceEEECC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 344455 43567776654 358999999999999844444444444444
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.14 E-value=1.2e-07 Score=97.09 Aligned_cols=123 Identities=19% Similarity=0.054 Sum_probs=72.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
+++||++++....|+-..+..+|+.|+++||+|++++.......-+. ....++.++.++.. ....
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~------~~~~~v~~~~~~~~------~~~~--- 66 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEI------LSNPNITIHPLPPP------PQRL--- 66 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHH------hcCCCEEEEECCCC------cccc---
Confidence 46789999998888889999999999999999999986532211110 12336777777421 1000
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC-c----chHHHHHHcCCCeEEEcc
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL-P----WTVNSAIKFKIPTILFDG 149 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~----~~~~~A~~lgiP~v~~~~ 149 (497)
.. ....+..+......+...+..+++.. +||+|++.... . .+..++...++|+|..+.
T Consensus 67 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~--~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 67 NK--LPFLLFAPLKVLWQFFSLLWLLYKLR--PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred cc--chHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 00 01112122222233344455556665 89999975422 1 123346667999987544
No 54
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=6.7e-09 Score=95.16 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=97.0
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHH-hCCCCeEeccccch-HHhhhcCC
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEER-TTGRGFIIRGWAPQ-VLLLSHRA 366 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~v~~~~pq-~~lL~~~~ 366 (497)
-|+||+|-.- .....-+++..|.+.+..+-++++..... + ..+.+. -..+|+........ ..++..++
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p~-------l-~~l~k~~~~~~~i~~~~~~~dma~LMke~d 229 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNPT-------L-KNLRKRAEKYPNINLYIDTNDMAELMKEAD 229 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCcc-------h-hHHHHHHhhCCCeeeEecchhHHHHHHhcc
Confidence 5999998542 22344457777777776777777743321 2 233222 23566666555543 44998888
Q ss_pred ccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHH
Q 010940 367 IGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLM 446 (497)
Q Consensus 367 ~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 446 (497)
+ .|+-||. |+.|++.-|+|.+++|+...|.--|+.. +.+|+-..+... +.++....-+.++.
T Consensus 230 ~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~--------------l~~~~~~~~~~~i~ 291 (318)
T COG3980 230 L--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYH--------------LKDLAKDYEILQIQ 291 (318)
T ss_pred h--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCC--------------CchHHHHHHHHHhh
Confidence 7 9998885 8999999999999999999999999999 658887766532 45666777777888
Q ss_pred cCCchhHHHHHHHH
Q 010940 447 DRGKQGEKRRKRAR 460 (497)
Q Consensus 447 ~~~~~~~~~~~~a~ 460 (497)
+| ...|.+..
T Consensus 292 ~d----~~~rk~l~ 301 (318)
T COG3980 292 KD----YARRKNLS 301 (318)
T ss_pred hC----HHHhhhhh
Confidence 87 55554433
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.09 E-value=3.5e-07 Score=90.55 Aligned_cols=318 Identities=19% Similarity=0.115 Sum_probs=165.5
Q ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHH
Q 010940 20 PGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNF 99 (497)
Q Consensus 20 ~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (497)
.|+......|++.|.+.||+|++++........... ....... .. .. . .....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~-----------~~~~~~~-----~~-------~~---~-~~~~~ 66 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE-----------VGGIVVV-----RP-------PP---L-LRVRR 66 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee-----------ecCccee-----cC-------Cc---c-cccch
Confidence 689999999999999999999999977543321111 0000000 00 00 0 00001
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchH--HHHHHcCCCeEEEccchHHHHHhhhhhhhccCCCCcccccCCC
Q 010940 100 FHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTV--NSAIKFKIPTILFDGMGCFACCCTHKLEISKVSKFESFVVPGL 177 (497)
Q Consensus 100 ~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgl 177 (497)
..........+..+++.. ++|+|++........ ..+...++|++..........
T Consensus 67 ~~~~~~~~~~~~~~~~~~--~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---------------------- 122 (374)
T cd03801 67 LLLLLLLALRLRRLLRRE--RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGR---------------------- 122 (374)
T ss_pred hHHHHHHHHHHHHHhhhc--CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhc----------------------
Confidence 111122334466667777 999999888654433 467888999987554321110
Q ss_pred CCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcC---CcEEEeccCcCCCc
Q 010940 178 PHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKG---DKVWCIGPVSACNK 254 (497)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~---~~v~~vGpl~~~~~ 254 (497)
.. . . .... ...............+.+++.+-...+ .+....+ .++..+.... ...
T Consensus 123 ~~----~-~------~~~~-----~~~~~~~~~~~~~~~d~~i~~s~~~~~-----~~~~~~~~~~~~~~~i~~~~-~~~ 180 (374)
T cd03801 123 PG----N-E------LGLL-----LKLARALERRALRRADRIIAVSEATRE-----ELRELGGVPPEKITVIPNGV-DTE 180 (374)
T ss_pred cc----c-c------hhHH-----HHHHHHHHHHHHHhCCEEEEecHHHHH-----HHHhcCCCCCCcEEEecCcc-ccc
Confidence 00 0 0 0000 111112222234556676666554322 2223222 2566655432 111
Q ss_pred cchhhhhhccCCCCCCCcCc-chhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCC---CE-EEEEeCCCCC
Q 010940 255 LNIDKAERCRGENGSTVDDY-EQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQ---PF-IWVIRGGERS 329 (497)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~---~~-i~~~~~~~~~ 329 (497)
. .... .....-... .++..+++.+|+... ......+++++..... .+ ++..+.+..
T Consensus 181 ~---------------~~~~~~~~~~~~~~-~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~- 241 (374)
T cd03801 181 R---------------FRPAPRAARRRLGI-PEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVIVGDGPL- 241 (374)
T ss_pred c---------------cCccchHHHhhcCC-cCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEEEeCcHH-
Confidence 0 0000 000011111 122356677787653 2333445555543321 23 233342211
Q ss_pred CCccccccchhHHH----HhCCCCeEeccccchHH---hhhcCCcccccc----CCCchhHHHHHhhCCceeeccccccc
Q 010940 330 QGLEKWIQEEGFEE----RTTGRGFIIRGWAPQVL---LLSHRAIGGFLT----HCGWNSTLEGVSAGVPLVTCPLFAEQ 398 (497)
Q Consensus 330 ~~~~~~~lp~~~~~----~~~~~nv~v~~~~pq~~---lL~~~~~~~~I~----HgG~gt~~eal~~GvP~v~iP~~~DQ 398 (497)
...+.+ .....++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+.
T Consensus 242 --------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~---- 307 (374)
T cd03801 242 --------REELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV---- 307 (374)
T ss_pred --------HHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----
Confidence 122221 22467899999997544 6777887 553 2446789999999999998654
Q ss_pred cchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHH
Q 010940 399 FYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRA 459 (497)
Q Consensus 399 ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a 459 (497)
......+ +..+.|...+. .+.+++.++|.++++|++...++.+++
T Consensus 308 ~~~~~~~-~~~~~g~~~~~---------------~~~~~l~~~i~~~~~~~~~~~~~~~~~ 352 (374)
T cd03801 308 GGIPEVV-EDGETGLLVPP---------------GDPEALAEAILRLLDDPELRRRLGEAA 352 (374)
T ss_pred CChhHHh-cCCcceEEeCC---------------CCHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 4455556 43567776655 458999999999999833333333333
No 56
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.08 E-value=3e-07 Score=92.39 Aligned_cols=94 Identities=20% Similarity=0.168 Sum_probs=64.4
Q ss_pred CCCeEeccccch-HHhhhcCCccccccC----CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 347 GRGFIIRGWAPQ-VLLLSHRAIGGFLTH----CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 347 ~~nv~v~~~~pq-~~lL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
.+++.+.++.++ ..++..+++ +|.- |.-.++.||+++|+|+|+. |....+..+ +.-..|...+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s----~~~~~~e~i-~~~~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVAS----NAGGIPEVV-KHGETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEe----CCCCchhhh-cCCCceEEcCC----
Confidence 457888888775 447888887 5522 2345999999999999985 344455555 43456766654
Q ss_pred ccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 010940 422 TWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQL 462 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 462 (497)
-+.+++.++|.++++|++...++++++++.
T Consensus 321 -----------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 -----------GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred -----------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 357899999999998844444555555554
No 57
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.05 E-value=9.5e-07 Score=90.38 Aligned_cols=144 Identities=19% Similarity=0.089 Sum_probs=87.5
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCC----CCEEEEEeCCCCCCCccccccchhHH---HHhCCCCeEeccccchHH-
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASS----QPFIWVIRGGERSQGLEKWIQEEGFE---ERTTGRGFIIRGWAPQVL- 360 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~----~~~i~~~~~~~~~~~~~~~~lp~~~~---~~~~~~nv~v~~~~pq~~- 360 (497)
.+++..|++.. ...+..++++++... .+++ .+|.+... +.++ +....+|+.+.+|+|+..
T Consensus 230 ~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~-ivG~g~~~---------~~l~~~~~~~~l~~v~f~G~~~~~~~ 297 (412)
T PRK10307 230 KIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFV-ICGQGGGK---------ARLEKMAQCRGLPNVHFLPLQPYDRL 297 (412)
T ss_pred EEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEE-EECCChhH---------HHHHHHHHHcCCCceEEeCCCCHHHH
Confidence 56666787753 234455666665432 2333 34433221 2222 222335899999998754
Q ss_pred --hhhcCCccccccCCCc------hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccc
Q 010940 361 --LLSHRAIGGFLTHCGW------NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLV 432 (497)
Q Consensus 361 --lL~~~~~~~~I~HgG~------gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~ 432 (497)
++..+++.++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|+.++.
T Consensus 298 ~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~--------------- 357 (412)
T PRK10307 298 PALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP--------------- 357 (412)
T ss_pred HHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC---------------
Confidence 6878888555555332 246899999999999764321 122333 4 67887765
Q ss_pred cCHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 010940 433 IKREKVKEAIEKLMDRGKQGEKRRKRARQLGE 464 (497)
Q Consensus 433 ~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~ 464 (497)
-+.+++.++|.++++|++....+++++++..+
T Consensus 358 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 389 (412)
T PRK10307 358 ESVEALVAAIAALARQALLRPKLGTVAREYAE 389 (412)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 35899999999999884444556666655443
No 58
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.05 E-value=3e-07 Score=91.63 Aligned_cols=148 Identities=18% Similarity=0.111 Sum_probs=90.4
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCC-CCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHH---hhhc
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASS-QPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVL---LLSH 364 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~---lL~~ 364 (497)
.+++..|++.. ......++++++... ..+++. |.+..... +..-.++....+|+.+.+|+|+.+ ++..
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~-G~g~~~~~-----~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ 263 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIV-GEGPLEAE-----LEALAAALGLLDRVRFLGRLDDEEKAALLAA 263 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEE-eCChhHHH-----HHHHHHhcCCcceEEEcCCCCHHHHHHHHHh
Confidence 56677787653 334556778877776 343333 32221100 111111222457999999999754 7777
Q ss_pred CCccccccC---CCc-hhHHHHHhhCCceeeccccccccchHHHHHHH-HcceEEeccccccccccccccccccCHHHHH
Q 010940 365 RAIGGFLTH---CGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQV-LGIGVSVGIEAAVTWGLEDKSGLVIKREKVK 439 (497)
Q Consensus 365 ~~~~~~I~H---gG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~-~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 439 (497)
+++.++.++ .|. .++.||+++|+|+|+....+.+ ..+ +. -+.|...+. -+.+++.
T Consensus 264 ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i-~~~~~~g~~~~~---------------~d~~~~~ 323 (357)
T cd03795 264 CDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYV-NLHGVTGLVVPP---------------GDPAALA 323 (357)
T ss_pred CCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHH-hhCCCceEEeCC---------------CCHHHHH
Confidence 887443332 343 4799999999999986544333 333 32 467776654 3589999
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHH
Q 010940 440 EAIEKLMDRGKQGEKRRKRARQLGE 464 (497)
Q Consensus 440 ~ai~~vl~~~~~~~~~~~~a~~~~~ 464 (497)
++|.++++|++...++++++++..+
T Consensus 324 ~~i~~l~~~~~~~~~~~~~~~~~~~ 348 (357)
T cd03795 324 EAIRRLLEDPELRERLGEAARERAE 348 (357)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 9999999985555555555555443
No 59
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.02 E-value=4.7e-07 Score=93.06 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=62.5
Q ss_pred eEeccccch-HHhhhcCCcccccc--C--CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccc
Q 010940 350 FIIRGWAPQ-VLLLSHRAIGGFLT--H--CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWG 424 (497)
Q Consensus 350 v~v~~~~pq-~~lL~~~~~~~~I~--H--gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~ 424 (497)
+++.+...+ ..++..+++ +|+. . +|..++.||+++|+|+|+.|...++......+ ...|.++..
T Consensus 304 v~l~~~~~el~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~--------- 372 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV--------- 372 (425)
T ss_pred EEEEecHHHHHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE---------
Confidence 444333333 347777876 2331 1 23345999999999999999988888877776 435665542
Q ss_pred cccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 010940 425 LEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLG 463 (497)
Q Consensus 425 ~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 463 (497)
-++++|.++|.++++|++....+.++++++.
T Consensus 373 --------~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~ 403 (425)
T PRK05749 373 --------EDAEDLAKAVTYLLTDPDARQAYGEAGVAFL 403 (425)
T ss_pred --------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3578999999999998444444555554443
No 60
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.02 E-value=1.3e-06 Score=88.67 Aligned_cols=93 Identities=20% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCCeEeccccchH---HhhhcCCccccccCC---C-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccc
Q 010940 347 GRGFIIRGWAPQV---LLLSHRAIGGFLTHC---G-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 347 ~~nv~v~~~~pq~---~lL~~~~~~~~I~Hg---G-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
.+++.+.+++|+. .++..+++ ++... | -.++.||+++|+|+|+.-. ......+ ..-+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHh-ccCCceEEeC---
Confidence 4789999999976 46777787 55322 2 2578999999999998643 3344445 4245676553
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQL 462 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 462 (497)
.+++++.++|.++++|++...++++++++.
T Consensus 349 -------------~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 349 -------------PTPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred -------------CCHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 357899999999999854445555555544
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.01 E-value=3.6e-07 Score=89.95 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=62.7
Q ss_pred CCCeEeccccch-HHhhhcCCccccccCCC----chhHHHHHhhCCceeeccccccccchHHHHHHHHc-ceEEeccccc
Q 010940 347 GRGFIIRGWAPQ-VLLLSHRAIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLG-IGVSVGIEAA 420 (497)
Q Consensus 347 ~~nv~v~~~~pq-~~lL~~~~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G-~G~~l~~~~~ 420 (497)
..++.+.++... ..++..+++ +|.-.. -+++.||+++|+|+|+.+..+.+ ..+.+ .| .|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~-~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIE-DGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhc-cCcceEEeCC---
Confidence 466777777433 458888887 665542 46899999999999986543333 22324 44 7777764
Q ss_pred cccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 010940 421 VTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLG 463 (497)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 463 (497)
.+.+++.++|.++++|++....++++++++.
T Consensus 304 ------------~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 334 (348)
T cd03820 304 ------------GDVEALAEALLRLMEDEELRKRMGANARESA 334 (348)
T ss_pred ------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 4579999999999998444444444444433
No 62
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.99 E-value=6.7e-07 Score=91.22 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=66.3
Q ss_pred CCCeEeccccchH---HhhhcCCcccccc---CCCc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccc
Q 010940 347 GRGFIIRGWAPQV---LLLSHRAIGGFLT---HCGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 347 ~~nv~v~~~~pq~---~lL~~~~~~~~I~---HgG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
.+++.+.+++|+. .+|..+++ +|. +-|. .++.||+++|+|+|+... ......+ +.-+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECCC--
Confidence 4689999999865 47888887 553 2233 589999999999998643 3444455 43556776654
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLG 463 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 463 (497)
-+.+++.++|.++++|++...++++++++..
T Consensus 353 -------------~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 353 -------------HDPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3589999999999998444445555555443
No 63
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.97 E-value=2e-06 Score=86.04 Aligned_cols=93 Identities=19% Similarity=0.149 Sum_probs=62.2
Q ss_pred CCCeEeccccc-hH---HhhhcCCccccccCCC----chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccc
Q 010940 347 GRGFIIRGWAP-QV---LLLSHRAIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIE 418 (497)
Q Consensus 347 ~~nv~v~~~~p-q~---~lL~~~~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~ 418 (497)
..++...+|++ +. .++..+++ +|.... .+++.||+++|+|+|+... ......+ +..+.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhhe-eCCCceEEeCC-
Confidence 46788889998 43 36877887 766532 4799999999999987643 2333344 32346666554
Q ss_pred cccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010940 419 AAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQ 461 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 461 (497)
.+.+++.++|.++++|++....+.+++++
T Consensus 315 --------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 343 (365)
T cd03825 315 --------------GDPEDLAEGIEWLLADPDEREELGEAARE 343 (365)
T ss_pred --------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 46889999999999883333334444433
No 64
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.95 E-value=2.6e-06 Score=84.56 Aligned_cols=80 Identities=19% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCCeEeccccchH---HhhhcCCccccccC----CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccc
Q 010940 347 GRGFIIRGWAPQV---LLLSHRAIGGFLTH----CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 347 ~~nv~v~~~~pq~---~lL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
.+|+.+.+++++. .++..+++ +|.. |..+++.||+++|+|+|+-+. ......+ +..+.|...+.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~-~~~~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEII-TDGENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHh-cCCcceeEECC--
Confidence 5789999999875 46777777 5522 445789999999999997653 3344455 53566776665
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcC
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+.+++.++|.++++|
T Consensus 329 -------------~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 329 -------------GDPEALAEAILRLLAD 344 (377)
T ss_pred -------------CCHHHHHHHHHHHhcC
Confidence 4688999999999998
No 65
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.95 E-value=1.4e-06 Score=86.69 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=63.7
Q ss_pred CCCCeEeccccchHH---hhhcCCccccccC--------CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEE
Q 010940 346 TGRGFIIRGWAPQVL---LLSHRAIGGFLTH--------CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVS 414 (497)
Q Consensus 346 ~~~nv~v~~~~pq~~---lL~~~~~~~~I~H--------gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~ 414 (497)
..+|+.+.+++|+++ ++..+++.++-+. |.-+++.||+++|+|+|+.+.. .....+ +....|..
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i-~~~~~g~~ 308 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELV-EDGETGLL 308 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhh-hCCCceEE
Confidence 357899999998654 6677887333222 2346899999999999986542 223344 52347777
Q ss_pred eccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010940 415 VGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQ 461 (497)
Q Consensus 415 l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 461 (497)
++. -+.+++.++|.++++|++...++++++++
T Consensus 309 ~~~---------------~~~~~l~~~i~~~~~~~~~~~~~~~~a~~ 340 (355)
T cd03799 309 VPP---------------GDPEALADAIERLLDDPELRREMGEAGRA 340 (355)
T ss_pred eCC---------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 654 35899999999999984333344444443
No 66
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.94 E-value=3.8e-06 Score=83.63 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=63.4
Q ss_pred CCCeEeccccchHH---hhhcCCccccccC-CC-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFLTH-CG-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I~H-gG-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
.+++.+.+|+++.+ ++..+++-++-++ .| .+++.||+++|+|+|+.+ .......+ .. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~~~~-~~-~~~~~~~~---- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTD----KVPWQELI-EY-GCGWVVDD---- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcC----CCCHHHHh-hc-CceEEeCC----
Confidence 57899999999654 5777887222222 22 468999999999999865 34455555 53 77765542
Q ss_pred ccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 010940 422 TWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQL 462 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 462 (497)
+.+++.++|.++++|++....+.+++++.
T Consensus 331 ------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ------------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ------------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45899999999999844444444444444
No 67
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.92 E-value=6.8e-06 Score=84.79 Aligned_cols=93 Identities=14% Similarity=0.093 Sum_probs=61.6
Q ss_pred CCCeEeccccchHHh---hhcC--CccccccCC---C-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecc
Q 010940 347 GRGFIIRGWAPQVLL---LSHR--AIGGFLTHC---G-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGI 417 (497)
Q Consensus 347 ~~nv~v~~~~pq~~l---L~~~--~~~~~I~Hg---G-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~ 417 (497)
.+++.+.+++++.++ +..+ +.++||... | -.++.||+++|+|+|+.-. ..+...+ +.-..|..++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv-~~~~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDII-ANCRNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHh-cCCCcEEEeCC
Confidence 467888888887654 5544 123477654 3 3599999999999998743 3444445 43446777765
Q ss_pred ccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHH
Q 010940 418 EAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRA 459 (497)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a 459 (497)
-+++++.++|.++++|++....+.+++
T Consensus 391 ---------------~d~~~la~~i~~ll~~~~~~~~~~~~a 417 (439)
T TIGR02472 391 ---------------LDLEAIASALEDALSDSSQWQLWSRNG 417 (439)
T ss_pred ---------------CCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 358999999999999833333333333
No 68
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.92 E-value=1.6e-06 Score=86.34 Aligned_cols=151 Identities=11% Similarity=0.053 Sum_probs=85.5
Q ss_pred EEEEeeCCCcC-CCHHhHHHHHHHHHhCCCCE-EEEEeCCCCCCCccccccchhHH---HH-hCCCCeEeccccch-HHh
Q 010940 289 VIYACLGSICG-LATWQLLELGLGLEASSQPF-IWVIRGGERSQGLEKWIQEEGFE---ER-TTGRGFIIRGWAPQ-VLL 361 (497)
Q Consensus 289 ~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~---~~-~~~~nv~v~~~~pq-~~l 361 (497)
.+++..|.+.. -..+.+...+..+...+..+ ++.+|.+..... +...+. .+ ...+++.+.+|.++ ..+
T Consensus 186 ~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (355)
T cd03819 186 PVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRF-----YYAELLELIKRLGLQDRVTFVGHCSDMPAA 260 (355)
T ss_pred eEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccch-----HHHHHHHHHHHcCCcceEEEcCCcccHHHH
Confidence 66677787654 23444555555554432223 333443322111 111111 11 12467888888543 448
Q ss_pred hhcCCcccccc--CCC-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHH
Q 010940 362 LSHRAIGGFLT--HCG-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKV 438 (497)
Q Consensus 362 L~~~~~~~~I~--HgG-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 438 (497)
|..+++.++-+ +-| .+++.||+++|+|+|+.- -......+ +..+.|..++. -+.+++
T Consensus 261 l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i-~~~~~g~~~~~---------------~~~~~l 320 (355)
T cd03819 261 YALADIVVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETV-RPGETGLLVPP---------------GDAEAL 320 (355)
T ss_pred HHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHH-hCCCceEEeCC---------------CCHHHH
Confidence 88888833333 123 359999999999999764 33344455 53457877765 358899
Q ss_pred HHHHHHHHc-CCchhHHHHHHHHHHHH
Q 010940 439 KEAIEKLMD-RGKQGEKRRKRARQLGE 464 (497)
Q Consensus 439 ~~ai~~vl~-~~~~~~~~~~~a~~~~~ 464 (497)
.++|..++. |+++..+++++|++..+
T Consensus 321 ~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 321 AQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 999975554 54444555555555544
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.88 E-value=3.3e-06 Score=86.02 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=53.5
Q ss_pred CCCeEeccccchHH---hhhcCCccccccC---CCc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccc
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFLTH---CGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I~H---gG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
.+++.+.+|+|+.+ ++..+++ +|.- -|. .++.||+++|+|+|+-...+ ....+ + .|.+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~-~~~~~~~~--- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-P-PDMILLAE--- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-e-CCceeecC---
Confidence 46688899998644 7777887 5532 244 39999999999999876532 23344 4 34332221
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcC
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+.+++.++|.+++++
T Consensus 318 -------------~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 318 -------------PDVESIVRKLEEAISI 333 (398)
T ss_pred -------------CCHHHHHHHHHHHHhC
Confidence 3578999999999986
No 70
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.83 E-value=6.2e-07 Score=88.23 Aligned_cols=154 Identities=18% Similarity=0.084 Sum_probs=88.0
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhCCC--CEEEEEeCCCCCCCccccccchhHHHHhCC-CCeEeccccchHHhhhc
Q 010940 288 SVIYACLGSICGLATWQLLELGLGLEASSQ--PFIWVIRGGERSQGLEKWIQEEGFEERTTG-RGFIIRGWAPQVLLLSH 364 (497)
Q Consensus 288 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~-~nv~v~~~~pq~~lL~~ 364 (497)
++|.+--||-...-...+..++++.+.+.. ...+...... . +.+++.... ..+.+.+ .-.+++..
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~---------~-~~i~~~~~~~~~~~~~~--~~~~~m~~ 235 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK---------G-KDLKEIYGDISEFEISY--DTHKALLE 235 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc---------H-HHHHHHHhcCCCcEEec--cHHHHHHh
Confidence 489999999876333555555566544432 2222222211 1 122221111 2222222 33568888
Q ss_pred CCccccccCCCchhHHHHHhhCCceeecccc--ccccchHHHHHH--HHcceEEecc----ccccccccccccccccCHH
Q 010940 365 RAIGGFLTHCGWNSTLEGVSAGVPLVTCPLF--AEQFYNEKLAVQ--VLGIGVSVGI----EAAVTWGLEDKSGLVIKRE 436 (497)
Q Consensus 365 ~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~--~DQ~~na~~~~~--~~G~G~~l~~----~~~~~~~~~~~~~~~~~~~ 436 (497)
+++ +|+-+|..|+ |++.+|+|+|+ +.- .=|+.||+++++ ..|+.-.+-. +.-.-.-.. ...+++
T Consensus 236 aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ----~~~t~~ 307 (347)
T PRK14089 236 AEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQ----EFVTVE 307 (347)
T ss_pred hhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhc----ccCCHH
Confidence 887 9999999999 99999999999 553 358889999942 3554433311 000000000 128899
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 010940 437 KVKEAIEKLMDRGKQGEKRRKRARQLGEIA 466 (497)
Q Consensus 437 ~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~ 466 (497)
.|.+++.+ .. .+++++...++++.+
T Consensus 308 ~la~~i~~-~~----~~~~~~~~~~l~~~l 332 (347)
T PRK14089 308 NLLKAYKE-MD----REKFFKKSKELREYL 332 (347)
T ss_pred HHHHHHHH-HH----HHHHHHHHHHHHHHh
Confidence 99999877 22 255666666666655
No 71
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.81 E-value=9.2e-06 Score=81.43 Aligned_cols=93 Identities=19% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCCeEeccccchHH---hhhcCCccccccC----------CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceE
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFLTH----------CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGV 413 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I~H----------gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~ 413 (497)
..++.+.+++|+++ ++..+++ +|.. |-.+++.||+++|+|+|+-+.. .+...+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 47899999998755 5777887 5432 2246899999999999987653 355555 4367787
Q ss_pred EeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010940 414 SVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQ 461 (497)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 461 (497)
.++. -+.+++.++|.++++|++...++++++++
T Consensus 317 ~~~~---------------~d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 317 LVPE---------------GDVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EECC---------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 7765 35789999999999983323334444433
No 72
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.81 E-value=1.4e-06 Score=87.72 Aligned_cols=128 Identities=15% Similarity=0.135 Sum_probs=78.5
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCEEEEEeCCCCCCCccccccchhHHHHh-CCCCeEeccccchH--
Q 010940 288 SVIYACLGSICGLATWQLLELGLGLEAS-----SQPFIWVIRGGERSQGLEKWIQEEGFEERT-TGRGFIIRGWAPQV-- 359 (497)
Q Consensus 288 ~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq~-- 359 (497)
.+|+++.+-..... ..+..++++++.+ +..+++...++.. .-..+.+.. ..+++.+.+.+++.
T Consensus 198 ~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~ 268 (365)
T TIGR00236 198 RYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLNPV--------VREPLHKHLGDSKRVHLIEPLEYLDF 268 (365)
T ss_pred CEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCChH--------HHHHHHHHhCCCCCEEEECCCChHHH
Confidence 36766654322111 3456677776553 3455554333221 111122211 23678888766653
Q ss_pred -HhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHH
Q 010940 360 -LLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKV 438 (497)
Q Consensus 360 -~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 438 (497)
.++..+++ +|+-.|. .+.||+++|+|+|.++-..+++. .+ + .|.++.+. -++++|
T Consensus 269 ~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e---~~-~-~g~~~lv~----------------~d~~~i 324 (365)
T TIGR00236 269 LNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE---TV-E-AGTNKLVG----------------TDKENI 324 (365)
T ss_pred HHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH---HH-h-cCceEEeC----------------CCHHHH
Confidence 46667776 8887764 47999999999999976665552 22 4 67776552 368999
Q ss_pred HHHHHHHHcC
Q 010940 439 KEAIEKLMDR 448 (497)
Q Consensus 439 ~~ai~~vl~~ 448 (497)
.++|.++++|
T Consensus 325 ~~ai~~ll~~ 334 (365)
T TIGR00236 325 TKAAKRLLTD 334 (365)
T ss_pred HHHHHHHHhC
Confidence 9999999987
No 73
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.80 E-value=4.4e-07 Score=91.14 Aligned_cols=130 Identities=23% Similarity=0.206 Sum_probs=83.7
Q ss_pred CeEEEEeeCCCcCC-CHHhHHHHHHHHHhCCC-CEEEEEeCCCCCCCccccccchhHHH---HhC--CCCeEeccccchH
Q 010940 287 GSVIYACLGSICGL-ATWQLLELGLGLEASSQ-PFIWVIRGGERSQGLEKWIQEEGFEE---RTT--GRGFIIRGWAPQV 359 (497)
Q Consensus 287 ~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~---~~~--~~nv~v~~~~pq~ 359 (497)
++.|++++|..... ..+.+..++++++.... ++++....+... -+.+++ +.. .+|+.+.+..++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~--------~~~l~~~~~~~~~~~~~v~~~~~~~~~ 269 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRT--------RPRIREAGLEFLGHHPNVLLISPLGYL 269 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCCh--------HHHHHHHHHhhccCCCCEEEECCcCHH
Confidence 44788888876643 34567778888876543 255544433221 122222 111 4678777666543
Q ss_pred ---HhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHH
Q 010940 360 ---LLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKRE 436 (497)
Q Consensus 360 ---~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~ 436 (497)
.++..+++ ||+.+| |.+.||+++|+|+|+++.. |. +..+.+ .|++..+. -+.+
T Consensus 270 ~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~----------------~~~~ 325 (363)
T cd03786 270 YFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVG----------------TDPE 325 (363)
T ss_pred HHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecC----------------CCHH
Confidence 45766777 999999 7888999999999998733 32 323324 67665442 2478
Q ss_pred HHHHHHHHHHcC
Q 010940 437 KVKEAIEKLMDR 448 (497)
Q Consensus 437 ~l~~ai~~vl~~ 448 (497)
+|.++|.++++|
T Consensus 326 ~i~~~i~~ll~~ 337 (363)
T cd03786 326 AILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHHhcC
Confidence 899999999987
No 74
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.80 E-value=6.2e-06 Score=82.18 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCCCeEecc-ccchH---HhhhcCCcccccc--C----CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEe
Q 010940 346 TGRGFIIRG-WAPQV---LLLSHRAIGGFLT--H----CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSV 415 (497)
Q Consensus 346 ~~~nv~v~~-~~pq~---~lL~~~~~~~~I~--H----gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l 415 (497)
..+|+.+.+ |+|+. .++..+++ +|. + |-.+++.||+++|+|+|+.+..+ ...+ ...+.|..+
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEE
Confidence 346777765 48864 47777777 552 2 33468999999999999977543 2223 325677766
Q ss_pred ccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 010940 416 GIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLG 463 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 463 (497)
+. -+.+++.++|.++++|++...++++++++..
T Consensus 317 ~~---------------~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 349 (366)
T cd03822 317 PP---------------GDPAALAEAIRRLLADPELAQALRARAREYA 349 (366)
T ss_pred cC---------------CCHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 55 3588999999999998444444444444433
No 75
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.80 E-value=1.6e-06 Score=85.43 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=54.9
Q ss_pred CCCeEeccccch-HHhhhcCCccccccC----CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 347 GRGFIIRGWAPQ-VLLLSHRAIGGFLTH----CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 347 ~~nv~v~~~~pq-~~lL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
.+++.+.++.++ ..++..+++ +|.- |.-+++.||+++|+|+|+... ......+ +..+.|...+..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~~--- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREIL-EDGENGLLVPVG--- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHh-cCCCceEEECCC---
Confidence 467888888775 358888887 5532 234689999999999998543 3555566 546778877653
Q ss_pred ccccccccccccCHHHH---HHHHHHHHcC
Q 010940 422 TWGLEDKSGLVIKREKV---KEAIEKLMDR 448 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l---~~ai~~vl~~ 448 (497)
+.+.+ .+++..+++|
T Consensus 315 ------------~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 315 ------------DEAALAAAALALLDLLLD 332 (353)
T ss_pred ------------CHHHHHHHHHHHHhccCC
Confidence 46666 5566666666
No 76
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.78 E-value=3e-06 Score=85.04 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=85.8
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCE-EEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccch--HH---hh
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASSQPF-IWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQ--VL---LL 362 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq--~~---lL 362 (497)
.+++..|.+.......+..+++++......+ ++.+|.+..... +-+..++.....++.+.+|+++ .. .+
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~-----l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~ 255 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEK-----CKAYSRELGIEQRIIWHGWQSQPWEVVQQKI 255 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHH-----HHHHHHHcCCCCeEEEecccCCcHHHHHHHH
Confidence 5566777664322344566777776654332 334444332110 1011111123578999998754 33 34
Q ss_pred hcCCccccccC----CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHH
Q 010940 363 SHRAIGGFLTH----CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKV 438 (497)
Q Consensus 363 ~~~~~~~~I~H----gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 438 (497)
..+++ +|.. |--.++.||+++|+|+|+.-. .......+ +.-..|..++. -+.+++
T Consensus 256 ~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv-~~~~~G~lv~~---------------~d~~~l 314 (359)
T PRK09922 256 KNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDII-KPGLNGELYTP---------------GNIDEF 314 (359)
T ss_pred hcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHc-cCCCceEEECC---------------CCHHHH
Confidence 34565 5543 224799999999999998641 22222344 53456777655 468999
Q ss_pred HHHHHHHHcCCc--hhHHHHHHHHHHHHH
Q 010940 439 KEAIEKLMDRGK--QGEKRRKRARQLGEI 465 (497)
Q Consensus 439 ~~ai~~vl~~~~--~~~~~~~~a~~~~~~ 465 (497)
.++|.++++|++ ....++++++++...
T Consensus 315 a~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 315 VGKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred HHHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 999999999854 233444444444443
No 77
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.76 E-value=3.2e-05 Score=85.14 Aligned_cols=163 Identities=11% Similarity=0.089 Sum_probs=90.2
Q ss_pred hhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCC-----CCEEEEEeCCCCCCCcccc--ccchhHH---HH-
Q 010940 276 QCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASS-----QPFIWVIRGGERSQGLEKW--IQEEGFE---ER- 344 (497)
Q Consensus 276 ~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~~~--~lp~~~~---~~- 344 (497)
.+..|+... .+ .++++.|.+.. .+.+..+++|+..+. ..+.+..+.+......... ..-..+. .+
T Consensus 469 ~l~r~~~~p-dk-pvIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 469 EIMRFFTNP-RK-PMILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred HHHhhcccC-CC-cEEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 455666443 33 34556676653 344555677765442 2444555543321100000 0001111 11
Q ss_pred hCCCCeEeccccchHH---hhhcCC--ccccccCC---Cc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEe
Q 010940 345 TTGRGFIIRGWAPQVL---LLSHRA--IGGFLTHC---GW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSV 415 (497)
Q Consensus 345 ~~~~nv~v~~~~pq~~---lL~~~~--~~~~I~Hg---G~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l 415 (497)
-..++|.+.+++++.+ ++..++ .++||.-. |. .++.||+++|+|+|+-... .....+ +.-.-|+.+
T Consensus 545 gL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII-~~g~nGlLV 619 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIH-RVLDNGLLV 619 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHh-ccCCcEEEE
Confidence 1246788888988765 454442 12377642 43 5899999999999997532 233334 423467777
Q ss_pred ccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 010940 416 GIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQL 462 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 462 (497)
+. -++++|.++|.++++|++....+.+++.+.
T Consensus 620 dP---------------~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~ 651 (1050)
T TIGR02468 620 DP---------------HDQQAIADALLKLVADKQLWAECRQNGLKN 651 (1050)
T ss_pred CC---------------CCHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 65 458999999999999844444455554443
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.72 E-value=6.3e-05 Score=74.49 Aligned_cols=79 Identities=27% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCCeEeccccch-HHhhhcCCccccccCCC----chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 347 GRGFIIRGWAPQ-VLLLSHRAIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 347 ~~nv~v~~~~pq-~~lL~~~~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
..++.+.+...+ ..++..+++ +|..+. .+++.||+++|+|+|+. |...+...+ +. .|..++.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~~---- 316 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVPP---- 316 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeCC----
Confidence 356766665543 458888887 665544 37999999999999984 444555555 43 5666654
Q ss_pred ccccccccccccCHHHHHHHHHHHHcCC
Q 010940 422 TWGLEDKSGLVIKREKVKEAIEKLMDRG 449 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~ 449 (497)
-+.+++.++|.++++|+
T Consensus 317 -----------~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 317 -----------GDPEALAEAIEALLADP 333 (365)
T ss_pred -----------CCHHHHHHHHHHHHhCh
Confidence 35889999999999983
No 79
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.71 E-value=1.2e-05 Score=80.30 Aligned_cols=81 Identities=19% Similarity=0.045 Sum_probs=56.5
Q ss_pred CCCeEeccccch-HHhhhcCCccccccC----CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 347 GRGFIIRGWAPQ-VLLLSHRAIGGFLTH----CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 347 ~~nv~v~~~~pq-~~lL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
.+++.+.++..+ ..++..+++ +|.- |-.+++.||+++|+|+|+.... .....+ +. +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~----~~~~~i-~~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTI----TKEVDL-TD-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCC----chhhhh-cc-CccEEeCC----
Confidence 467888887544 458888887 5543 3357999999999999986543 333444 53 55554432
Q ss_pred ccccccccccccCHHHHHHHHHHHHcCCc
Q 010940 422 TWGLEDKSGLVIKREKVKEAIEKLMDRGK 450 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~ 450 (497)
-+++++.++|.++++|++
T Consensus 316 -----------~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 316 -----------ESPEIWAEEILKLKSEDR 333 (358)
T ss_pred -----------CCHHHHHHHHHHHHhCcc
Confidence 347999999999999843
No 80
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.70 E-value=1.9e-05 Score=77.27 Aligned_cols=111 Identities=18% Similarity=0.277 Sum_probs=70.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKL 90 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~ 90 (497)
+|.|- ....-|+.-+-.+.++|.++||+|.+.+-+... ..... .-.|+++..+.-. ..
T Consensus 2 kIwiD-i~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~--~~~LL-----~~yg~~y~~iG~~------g~-------- 59 (335)
T PF04007_consen 2 KIWID-ITHPAHVHFFKNIIRELEKRGHEVLITARDKDE--TEELL-----DLYGIDYIVIGKH------GD-------- 59 (335)
T ss_pred eEEEE-CCCchHHHHHHHHHHHHHhCCCEEEEEEeccch--HHHHH-----HHcCCCeEEEcCC------CC--------
Confidence 44432 333449999999999999999999998865432 22221 2227888877411 00
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 91 PSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
.....+...... ...+-+++++. +||++|+-.. ..+..+|..+|+|++.+.=+
T Consensus 60 ---~~~~Kl~~~~~R-~~~l~~~~~~~--~pDv~is~~s-~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 60 ---SLYGKLLESIER-QYKLLKLIKKF--KPDVAISFGS-PEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred ---CHHHHHHHHHHH-HHHHHHHHHhh--CCCEEEecCc-HHHHHHHHHhCCCeEEEecC
Confidence 112223233322 23344555666 9999997654 66777999999999997655
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.69 E-value=3.6e-05 Score=76.83 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=70.7
Q ss_pred EEeeCCCcCCCHHhHHHHHHHHHhCC--CCEEEEEeCCCCCCCccccccchhHH-HHhCCCCeEeccccchHH---hhhc
Q 010940 291 YACLGSICGLATWQLLELGLGLEASS--QPFIWVIRGGERSQGLEKWIQEEGFE-ERTTGRGFIIRGWAPQVL---LLSH 364 (497)
Q Consensus 291 ~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~lp~~~~-~~~~~~nv~v~~~~pq~~---lL~~ 364 (497)
++..|++.. ...+..++++++... .+++ .+|.+..... +-..+. .....+++.+.+++++.+ ++..
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~-ivG~~~~~~~-----~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLV-IVGNADHNTP-----YGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEE-EEcCCCCcch-----HHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 345677653 234455677776654 3433 4444322111 111222 122357899999999865 5555
Q ss_pred CCccccccCC----Cc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHH
Q 010940 365 RAIGGFLTHC----GW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVK 439 (497)
Q Consensus 365 ~~~~~~I~Hg----G~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 439 (497)
+++ ++.+. |. +++.||+++|+|+|+....+ +...+ +. -|...... .. +.
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~----------------~~-l~ 321 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG----------------DD-LA 321 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc----------------hH-HH
Confidence 666 54433 22 47999999999999875432 22222 31 23333221 12 99
Q ss_pred HHHHHHHcC
Q 010940 440 EAIEKLMDR 448 (497)
Q Consensus 440 ~ai~~vl~~ 448 (497)
++|.++++|
T Consensus 322 ~~i~~l~~~ 330 (363)
T cd04955 322 SLLEELEAD 330 (363)
T ss_pred HHHHHHHhC
Confidence 999999998
No 82
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.67 E-value=1.1e-05 Score=80.44 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=55.1
Q ss_pred CCCeEeccccch-HHhhhcCCccccccCCC----chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 347 GRGFIIRGWAPQ-VLLLSHRAIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 347 ~~nv~v~~~~pq-~~lL~~~~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
.+|+.+.++..+ ..++..+++ +|.-.. .+++.||+++|+|+|+. |...+...+ +. .|..+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC----
Confidence 467888887755 458888887 554332 46899999999999974 555555555 43 4444443
Q ss_pred ccccccccccccCHHHHHHHHHHHHcC
Q 010940 422 TWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+.+++.++|.+++++
T Consensus 311 -----------~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 311 -----------SDPEALANKIDEILKM 326 (360)
T ss_pred -----------CCHHHHHHHHHHHHhC
Confidence 3588999999999853
No 83
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.67 E-value=2.9e-05 Score=76.25 Aligned_cols=328 Identities=16% Similarity=0.181 Sum_probs=178.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEe-CCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVT-TPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
-.+.+-.-|.|-++-.++|.++|+++ ++.|++-+ ++...+.+... .+..+....+|++
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~------~~~~v~h~YlP~D------------- 110 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAAL------FGDSVIHQYLPLD------------- 110 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHH------cCCCeEEEecCcC-------------
Confidence 36677778999999999999999999 88888876 44444444333 2223555555532
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcch--HHHHHHcCCCeEEEccchHHHHHhhhhhhhcc
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWT--VNSAIKFKIPTILFDGMGCFACCCTHKLEISK 165 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 165 (497)
. ...++.+++.+ +||++|.--.-.|. ..-++..|+|.+.+..=
T Consensus 111 -------~-----------~~~v~rFl~~~--~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR--------------- 155 (419)
T COG1519 111 -------L-----------PIAVRRFLRKW--RPKLLIIMETELWPNLINELKRRGIPLVLVNAR--------------- 155 (419)
T ss_pred -------c-----------hHHHHHHHHhc--CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee---------------
Confidence 0 11244566677 99998744433333 33488899999985431
Q ss_pred CCCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCCcEEE
Q 010940 166 VSKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGDKVWC 245 (497)
Q Consensus 166 ~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~v~~ 245 (497)
++. +....+.+ +..+.+. .+..-+.++.-+-. +...+ ..---++|..
T Consensus 156 ---------------LS~--rS~~~y~k--------~~~~~~~---~~~~i~li~aQse~--D~~Rf---~~LGa~~v~v 202 (419)
T COG1519 156 ---------------LSD--RSFARYAK--------LKFLARL---LFKNIDLILAQSEE--DAQRF---RSLGAKPVVV 202 (419)
T ss_pred ---------------ech--hhhHHHHH--------HHHHHHH---HHHhcceeeecCHH--HHHHH---HhcCCcceEE
Confidence 000 00000000 1122222 22333444443322 22222 2222245777
Q ss_pred eccCcCCCccchhhhhhccCCCCCCCcCc---chhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEE
Q 010940 246 IGPVSACNKLNIDKAERCRGENGSTVDDY---EQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWV 322 (497)
Q Consensus 246 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 322 (497)
.|-+=+..... .... +.+...++.. + .+.|..+|.. ...+.......++.+...+....
T Consensus 203 ~GNlKfd~~~~--------------~~~~~~~~~~r~~l~~~--r-~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llI 264 (419)
T COG1519 203 TGNLKFDIEPP--------------PQLAAELAALRRQLGGH--R-PVWVAASTHE-GEEEIILDAHQALKKQFPNLLLI 264 (419)
T ss_pred ecceeecCCCC--------------hhhHHHHHHHHHhcCCC--C-ceEEEecCCC-chHHHHHHHHHHHHhhCCCceEE
Confidence 77774332210 0111 2333344432 2 4666666643 23344444555554433222222
Q ss_pred EeCCCCCCCccccccchhHHHHhC-----------------CCCeEeccccch-HHhhhcCCc----cccccCCCchhHH
Q 010940 323 IRGGERSQGLEKWIQEEGFEERTT-----------------GRGFIIRGWAPQ-VLLLSHRAI----GGFLTHCGWNSTL 380 (497)
Q Consensus 323 ~~~~~~~~~~~~~~lp~~~~~~~~-----------------~~nv~v~~~~pq-~~lL~~~~~----~~~I~HgG~gt~~ 380 (497)
+-+.+.+. . +.+.+-.. ..++++.+-+-- ..++.-+++ +-++.+||+| ..
T Consensus 265 lVPRHpER------f-~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~L 336 (419)
T COG1519 265 LVPRHPER------F-KAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PL 336 (419)
T ss_pred EecCChhh------H-HHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hh
Confidence 22222110 0 01111111 123444444332 223333443 1245699998 78
Q ss_pred HHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHH
Q 010940 381 EGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRAR 460 (497)
Q Consensus 381 eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~ 460 (497)
|++++|+|++.-|+..-|.+.++++ ...|.|+.++. ++.|.+++..++.|++...+|.+++.
T Consensus 337 Epa~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~~-----------------~~~l~~~v~~l~~~~~~r~~~~~~~~ 398 (419)
T COG1519 337 EPAAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQVED-----------------ADLLAKAVELLLADEDKREAYGRAGL 398 (419)
T ss_pred hHHHcCCCEEeCCccccHHHHHHHH-HhcCCeEEECC-----------------HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999 65999998853 57788888888887555566666666
Q ss_pred HHHHHHHHH
Q 010940 461 QLGEIANRA 469 (497)
Q Consensus 461 ~~~~~~~~a 469 (497)
++-+..+.+
T Consensus 399 ~~v~~~~ga 407 (419)
T COG1519 399 EFLAQNRGA 407 (419)
T ss_pred HHHHHhhHH
Confidence 666665533
No 84
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.61 E-value=1.8e-05 Score=80.56 Aligned_cols=93 Identities=24% Similarity=0.292 Sum_probs=63.0
Q ss_pred CCCCeEeccccch-HHhhhcCCccccc--cC--CCc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccc
Q 010940 346 TGRGFIIRGWAPQ-VLLLSHRAIGGFL--TH--CGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 346 ~~~nv~v~~~~pq-~~lL~~~~~~~~I--~H--gG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
..+|+.+.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. . ...|.|..+.
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~--- 346 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA--- 346 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC---
Confidence 4578999999986 347888888 55 32 354 36999999999999987543221 1 2246676654
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQL 462 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~ 462 (497)
-+++++.++|.++++|++....+.+++++.
T Consensus 347 -------------~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 347 -------------ADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred -------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 258999999999999833333444444443
No 85
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.60 E-value=0.00012 Score=74.11 Aligned_cols=149 Identities=17% Similarity=0.131 Sum_probs=81.5
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhC--CCCEEEEEeCCCCCCCccccccchhHHHHh-----CCCCeE-eccccchHH
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEAS--SQPFIWVIRGGERSQGLEKWIQEEGFEERT-----TGRGFI-IRGWAPQVL 360 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~nv~-v~~~~pq~~ 360 (497)
.+++..|.... ...+..++++++.+ +..+++..++..... +-+.+++.. ...++. +.+++++.+
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPE------VAEEVRQAVALLDRNRTGIIWINKMLPKEE 273 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHH------HHHHHHHHHHHhccccCceEEecCCCCHHH
Confidence 45666677653 23445566676654 345544433322110 111222111 123354 346777543
Q ss_pred ---hhhcCCccccccC---CC-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccccccccccccccc
Q 010940 361 ---LLSHRAIGGFLTH---CG-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVI 433 (497)
Q Consensus 361 ---lL~~~~~~~~I~H---gG-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~ 433 (497)
++..+++ +|.- -| ..++.||+++|+|+|+... ......+ +.-+.|..++..+ .+ ..-
T Consensus 274 ~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~------~~---~~~ 337 (388)
T TIGR02149 274 LVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDN------SD---ADG 337 (388)
T ss_pred HHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCC------Cc---ccc
Confidence 6777887 6542 22 3477999999999998643 3455555 5355788776643 00 001
Q ss_pred CHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010940 434 KREKVKEAIEKLMDRGKQGEKRRKRARQ 461 (497)
Q Consensus 434 ~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 461 (497)
..+++.++|.++++|++....+.+++++
T Consensus 338 ~~~~l~~~i~~l~~~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 338 FQAELAKAINILLADPELAKKMGIAGRK 365 (388)
T ss_pred hHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 1278999999999983333344444443
No 86
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.59 E-value=4e-05 Score=75.62 Aligned_cols=128 Identities=13% Similarity=-0.013 Sum_probs=76.5
Q ss_pred EEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHh--CCCCeEeccccchHH---hhhc
Q 010940 290 IYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERT--TGRGFIIRGWAPQVL---LLSH 364 (497)
Q Consensus 290 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~~pq~~---lL~~ 364 (497)
+.+..|... ..+....++++++..+.++++ .|.+..... + .....+. ..+++.+.+++++.+ ++..
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i-~G~~~~~~~-----~-~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~ 243 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKL-AGPVSDPDY-----F-YREIAPELLDGPDIEYLGEVGGAEKAELLGN 243 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEE-EeCCCCHHH-----H-HHHHHHhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 344557663 233445677888777777665 443322110 0 1111111 258899999999754 5777
Q ss_pred CCcccccc--CCCc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHH
Q 010940 365 RAIGGFLT--HCGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEA 441 (497)
Q Consensus 365 ~~~~~~I~--HgG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 441 (497)
+++-++-+ +-|. .++.||+++|+|+|+... ......+ +.-..|...+ ..+++.++
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i-~~~~~g~l~~-----------------~~~~l~~~ 301 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVV-EDGVTGFLVD-----------------SVEELAAA 301 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhe-eCCCcEEEeC-----------------CHHHHHHH
Confidence 88733323 2343 489999999999998654 3333444 4222565442 26889999
Q ss_pred HHHHHcC
Q 010940 442 IEKLMDR 448 (497)
Q Consensus 442 i~~vl~~ 448 (497)
|.+++++
T Consensus 302 l~~l~~~ 308 (335)
T cd03802 302 VARADRL 308 (335)
T ss_pred HHHHhcc
Confidence 9988764
No 87
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.59 E-value=1.4e-05 Score=79.69 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=59.6
Q ss_pred CCCCeEeccccchHH---hhhcCCccccccC----CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccc
Q 010940 346 TGRGFIIRGWAPQVL---LLSHRAIGGFLTH----CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIE 418 (497)
Q Consensus 346 ~~~nv~v~~~~pq~~---lL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~ 418 (497)
...++.+.+++|+.+ ++..+++ +|.- |..+++.||+++|+|+|+... ......+ . ..|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~-~--~~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNI----SSLPEVA-G--DAALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCC----CCcccee-c--CceeeeCC-
Confidence 468899999998764 6777776 4433 234589999999999998543 2222223 3 23444443
Q ss_pred cccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHH
Q 010940 419 AAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRAR 460 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~ 460 (497)
-+.+++.++|.++++|++....+.++++
T Consensus 321 --------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 348 (365)
T cd03809 321 --------------LDPEALAAAIERLLEDPALREELRERGL 348 (365)
T ss_pred --------------CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3588999999999998333333444443
No 88
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.57 E-value=4.4e-05 Score=76.93 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=55.4
Q ss_pred CCeEeccccch-HHhhhcCCccccc--cC--CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccc
Q 010940 348 RGFIIRGWAPQ-VLLLSHRAIGGFL--TH--CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVT 422 (497)
Q Consensus 348 ~nv~v~~~~pq-~~lL~~~~~~~~I--~H--gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~ 422 (497)
.++.+.++..+ ..++..+++ +| ++ |--.++.||+++|+|+|+-.. ..+...+ +.-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i-~~~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELV-QHGVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHh-cCCCceEEeCC-----
Confidence 45666665443 457888888 55 33 335699999999999999654 3344445 53456776665
Q ss_pred cccccccccccCHHHHHHHHHHHHcC
Q 010940 423 WGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+.+++.++|.++++|
T Consensus 323 ----------~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 323 ----------GDAVALARALQPYVSD 338 (374)
T ss_pred ----------CCHHHHHHHHHHHHhC
Confidence 3588999999999988
No 89
>PLN02275 transferase, transferring glycosyl groups
Probab=98.47 E-value=0.00064 Score=68.49 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=51.3
Q ss_pred CCCeEecc-ccchHHh---hhcCCcccccc----C--CC-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEe
Q 010940 347 GRGFIIRG-WAPQVLL---LSHRAIGGFLT----H--CG-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSV 415 (497)
Q Consensus 347 ~~nv~v~~-~~pq~~l---L~~~~~~~~I~----H--gG-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l 415 (497)
-+|+.+.. |+|+.++ |..+++ +|. . -| -+++.||+++|+|+|+... ..+...+ +.-+.|..+
T Consensus 285 l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv 357 (371)
T PLN02275 285 LRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLF 357 (371)
T ss_pred CCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEE
Confidence 35666544 7887654 888888 652 1 12 3579999999999999642 3355555 645678776
Q ss_pred ccccccccccccccccccCHHHHHHHHHHHH
Q 010940 416 GIEAAVTWGLEDKSGLVIKREKVKEAIEKLM 446 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 446 (497)
+ +++++.++|.+++
T Consensus 358 ~-----------------~~~~la~~i~~l~ 371 (371)
T PLN02275 358 S-----------------SSSELADQLLELL 371 (371)
T ss_pred C-----------------CHHHHHHHHHHhC
Confidence 3 2678888888764
No 90
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.46 E-value=3.1e-05 Score=77.27 Aligned_cols=127 Identities=11% Similarity=0.114 Sum_probs=83.5
Q ss_pred EEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHH---hhhcCC
Q 010940 290 IYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVL---LLSHRA 366 (497)
Q Consensus 290 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~---lL~~~~ 366 (497)
.++..|++.. ......++++++..+.++++. |.+... +.+++ ...+||.+.+++|+.+ ++..++
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~iv-G~g~~~---------~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVI-GDGPEL---------DRLRA-KAGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEE-ECChhH---------HHHHh-hcCCCEEEecCCCHHHHHHHHHhCC
Confidence 3455677653 234566788888877665554 433211 22222 3468999999999854 677888
Q ss_pred ccccccCCCch-hHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHH
Q 010940 367 IGGFLTHCGWN-STLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKL 445 (497)
Q Consensus 367 ~~~~I~HgG~g-t~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v 445 (497)
+-++-+.-|.| ++.||+++|+|+|+....+ ....+ +.-+.|..++. -+++++.++|.++
T Consensus 264 ~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~---------------~~~~~la~~i~~l 323 (351)
T cd03804 264 AFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEE---------------QTVESLAAAVERF 323 (351)
T ss_pred EEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCC---------------CCHHHHHHHHHHH
Confidence 73333444443 5789999999999976432 33334 43467887765 3578899999999
Q ss_pred HcCC
Q 010940 446 MDRG 449 (497)
Q Consensus 446 l~~~ 449 (497)
++|+
T Consensus 324 ~~~~ 327 (351)
T cd03804 324 EKNE 327 (351)
T ss_pred HhCc
Confidence 9984
No 91
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.46 E-value=0.00099 Score=72.02 Aligned_cols=127 Identities=15% Similarity=0.207 Sum_probs=74.4
Q ss_pred CcEEEEEcCCC-------------ccCHHHHHHHHHH--------HHHCCC----eEEEEeCCCCc-------chhhhhH
Q 010940 9 QLHFVLIPLMS-------------PGHLIPMIDMARL--------LAEHGI----KVTIVTTPLNT-------TRFNITI 56 (497)
Q Consensus 9 ~~~il~~~~p~-------------~GHi~P~l~LA~~--------L~~rGH----~Vt~~~~~~~~-------~~~~~~~ 56 (497)
.+||++++.-+ .|+..=.+.+|++ |+++|| +|+++|--... ..++..
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~- 333 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKV- 333 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccc-
Confidence 37888877644 5777777878886 578999 67788733211 111211
Q ss_pred hhhhhcCCCeeEEEeeCCCccCCCCCCCCCCC-CCCChhHHHHHHHHHHHhhHHHHH-HHhhcCCCCcEEEeCCCC--cc
Q 010940 57 KRAVESGLSIQLLQLEFPSVESGLPQGCENMD-KLPSRDLIKNFFHAASMLKQPFEQ-LFDKLHPRPSCIISGKNL--PW 132 (497)
Q Consensus 57 ~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~pDlvI~D~~~--~~ 132 (497)
....+.+...+|+.. ....... .++ ...++..++.+...+.+ +..+...+||+|++.+.. ..
T Consensus 334 ----~~~~~~~I~rvp~g~------~~~~~~~~~i~----k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glv 399 (784)
T TIGR02470 334 ----YGTEHAWILRVPFRT------ENGIILRNWIS----RFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLV 399 (784)
T ss_pred ----cCCCceEEEEecCCC------CcccccccccC----HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHH
Confidence 223467777776431 1110001 111 22445566666666544 433434589999998854 34
Q ss_pred hHHHHHHcCCCeEEEccc
Q 010940 133 TVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 133 ~~~~A~~lgiP~v~~~~~ 150 (497)
+..+++.+|||.+.+..+
T Consensus 400 a~lla~~lgVP~v~t~Hs 417 (784)
T TIGR02470 400 ASLLARKLGVTQCTIAHA 417 (784)
T ss_pred HHHHHHhcCCCEEEECCc
Confidence 566899999998876544
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.44 E-value=0.00065 Score=73.15 Aligned_cols=97 Identities=21% Similarity=0.238 Sum_probs=65.2
Q ss_pred CCCeEeccccch-HHhhhcCCcccccc---CCC-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 347 GRGFIIRGWAPQ-VLLLSHRAIGGFLT---HCG-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 347 ~~nv~v~~~~pq-~~lL~~~~~~~~I~---HgG-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
.++|.+.+|.++ ..+|..+++ ||. +.| -+++.||+++|+|+|+... ......+ +.-..|+.++..+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV-~dg~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAV-QEGVTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHc-cCCCCEEEeCCCC--
Confidence 578999999875 347888887 554 445 3689999999999999754 2344445 5234688887655
Q ss_pred ccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 010940 422 TWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLG 463 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 463 (497)
.+++++.++|.+++.+....+.+++++++..
T Consensus 644 -----------~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 644 -----------VTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred -----------CChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 5667788887777654222366666555443
No 93
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.44 E-value=0.00059 Score=69.61 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=64.0
Q ss_pred CCCeEeccccchHH---hhhcCCccccccC---------CCc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceE
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFLTH---------CGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGV 413 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I~H---------gG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~ 413 (497)
.+++.+.+|+|+.+ ++..+++ +|.- -|. +++.||+++|+|+|+... ......+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhh-cCCCceE
Confidence 57899999999865 6777887 5542 244 578999999999998743 3344444 5244677
Q ss_pred EeccccccccccccccccccCHHHHHHHHHHHHc-CCchhHHHHHHHHH
Q 010940 414 SVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMD-RGKQGEKRRKRARQ 461 (497)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~-~~~~~~~~~~~a~~ 461 (497)
.++. -+.+++.++|.++++ |++...++.+++++
T Consensus 351 lv~~---------------~d~~~la~ai~~l~~~d~~~~~~~~~~ar~ 384 (406)
T PRK15427 351 LVPE---------------NDAQALAQRLAAFSQLDTDELAPVVKRARE 384 (406)
T ss_pred EeCC---------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7665 358999999999998 83333344444443
No 94
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.36 E-value=1.5e-06 Score=72.07 Aligned_cols=117 Identities=16% Similarity=0.121 Sum_probs=78.5
Q ss_pred EEEEeeCCCcCCC---HHhHHHHHHHHHhCCC-CEEEEEeCCCCCCCccccccchhHHHHhCCCC--eEeccccch-HHh
Q 010940 289 VIYACLGSICGLA---TWQLLELGLGLEASSQ-PFIWVIRGGERSQGLEKWIQEEGFEERTTGRG--FIIRGWAPQ-VLL 361 (497)
Q Consensus 289 ~V~vs~GS~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~n--v~v~~~~pq-~~l 361 (497)
.+||+-||....+ .-.-.++.+.|.+.|. +.|++.|.+... .++....-..... +...+|-|- .+.
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccHHHH
Confidence 7999999987521 1122345667777775 778888876321 2232221111223 444466775 556
Q ss_pred hhcCCccccccCCCchhHHHHHhhCCceeeccc----cccccchHHHHHHHHcceEEe
Q 010940 362 LSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPL----FAEQFYNEKLAVQVLGIGVSV 415 (497)
Q Consensus 362 L~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~----~~DQ~~na~~~~~~~G~G~~l 415 (497)
...+++ +|+|+|+||++|.|..|+|.++++- --.|-..|..+++ .|-=..-
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C 132 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYC 132 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEe
Confidence 666887 9999999999999999999999993 3368899999955 6654433
No 95
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.34 E-value=9.8e-06 Score=80.40 Aligned_cols=255 Identities=16% Similarity=0.165 Sum_probs=128.4
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCcEEEeCC--CC-cchHHHHHHcCCCeEEEccchHHHHHhhhhhhhccCCCCcccccCC
Q 010940 100 FHAASMLKQPFEQLFDKLHPRPSCIISGK--NL-PWTVNSAIKFKIPTILFDGMGCFACCCTHKLEISKVSKFESFVVPG 176 (497)
Q Consensus 100 ~~~~~~~~~~l~~ll~~~~~~pDlvI~D~--~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg 176 (497)
...+......+.++++.. +||+||+-. +. .+++.+|..++||++-+.... ..... .-|
T Consensus 49 ~~~~~~~~~~~~~~~~~~--~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGl----------------Rs~d~-~~g 109 (346)
T PF02350_consen 49 AKSTGLAIIELADVLERE--KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGL----------------RSGDR-TEG 109 (346)
T ss_dssp HHHHHHHHHHHHHHHHHH--T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES---------------------S-T-TSS
T ss_pred HHHHHHHHHHHHHHHHhc--CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCC----------------Ccccc-CCC
Confidence 344455666777888888 999998544 33 466778999999977644320 00000 001
Q ss_pred CCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhc-CCcEEEeccCcCCCcc
Q 010940 177 LPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVK-GDKVWCIGPVSACNKL 255 (497)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~-~~~v~~vGpl~~~~~~ 255 (497)
+ .++..++.... -++..+..+-...+ .+. +... +.+|+.+|...++.-.
T Consensus 110 ~------------------------~de~~R~~i~~--la~lhf~~t~~~~~--~L~--~~G~~~~rI~~vG~~~~D~l~ 159 (346)
T PF02350_consen 110 M------------------------PDEINRHAIDK--LAHLHFAPTEEARE--RLL--QEGEPPERIFVVGNPGIDALL 159 (346)
T ss_dssp T------------------------THHHHHHHHHH--H-SEEEESSHHHHH--HHH--HTT--GGGEEE---HHHHHHH
T ss_pred C------------------------chhhhhhhhhh--hhhhhccCCHHHHH--HHH--hcCCCCCeEEEEChHHHHHHH
Confidence 1 12333333332 23444444433211 111 1222 3689999977543210
Q ss_pred chhhhhhccCCCCCCCcCcchh--cccccCCCCCeEEEEeeCCCcCCC-H---HhHHHHHHHHHhC-CCCEEEEEeCCCC
Q 010940 256 NIDKAERCRGENGSTVDDYEQC--LKWLDSWEPGSVIYACLGSICGLA-T---WQLLELGLGLEAS-SQPFIWVIRGGER 328 (497)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~l--~~~l~~~~~~~~V~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~ 328 (497)
. .+. ...+.+ ..++.. .+++.++|++=...+.. + ..+..++++|... +.++||.+.+.+.
T Consensus 160 ~----~~~--------~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~ 226 (346)
T PF02350_consen 160 Q----NKE--------EIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR 226 (346)
T ss_dssp H----HHH--------TTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH
T ss_pred H----hHH--------HHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch
Confidence 0 000 001111 112112 45669999995555544 3 3444566666665 6788888775432
Q ss_pred CCCccccccchhHHHHhCC-CCeEeccccch---HHhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHH
Q 010940 329 SQGLEKWIQEEGFEERTTG-RGFIIRGWAPQ---VLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKL 404 (497)
Q Consensus 329 ~~~~~~~~lp~~~~~~~~~-~nv~v~~~~pq---~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~ 404 (497)
. ...+.++... +|+.+.+-+++ ..+|.++++ +|+.+| |-.-||.+.|+|.|.+ -|+...=.-
T Consensus 227 ~--------~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~ 292 (346)
T PF02350_consen 227 G--------SDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI---RDSGERQEG 292 (346)
T ss_dssp H--------HHHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC---SSS-S-HHH
T ss_pred H--------HHHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHH
Confidence 1 1223222221 48888877764 558888888 999999 4444999999999999 444333332
Q ss_pred HHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 405 AVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 405 ~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
+ + .|..+-+. .++++|.++|.+++++
T Consensus 293 r-~-~~~nvlv~----------------~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 293 R-E-RGSNVLVG----------------TDPEAIIQAIEKALSD 318 (346)
T ss_dssp H-H-TTSEEEET----------------SSHHHHHHHHHHHHH-
T ss_pred H-h-hcceEEeC----------------CCHHHHHHHHHHHHhC
Confidence 2 2 45555432 5789999999999985
No 96
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.30 E-value=0.00012 Score=72.78 Aligned_cols=166 Identities=19% Similarity=0.159 Sum_probs=87.6
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHh---C--CCCEEEEEeCCCCCCCccccccchhHHHH--hCCCCeEec-cccc
Q 010940 286 PGSVIYACLGSICGLATWQLLELGLGLEA---S--SQPFIWVIRGGERSQGLEKWIQEEGFEER--TTGRGFIIR-GWAP 357 (497)
Q Consensus 286 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~nv~v~-~~~p 357 (497)
++++|.+--||-..--...+..++++.+. . +..+++........ +.+... ....++.+. ..-.
T Consensus 183 ~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~---------~~i~~~~~~~~~~~~~~~~~~~ 253 (373)
T PF02684_consen 183 DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHE---------ELIEEILAEYPPDVSIVIIEGE 253 (373)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHH---------HHHHHHHHhhCCCCeEEEcCCc
Confidence 34589999998765223344445555432 2 34555544322211 111110 112222221 1123
Q ss_pred hHHhhhcCCccccccCCCchhHHHHHhhCCceeecccc-ccccchHHHHHHHHc-ceE-------Eeccccccccccccc
Q 010940 358 QVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLF-AEQFYNEKLAVQVLG-IGV-------SVGIEAAVTWGLEDK 428 (497)
Q Consensus 358 q~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~-~DQ~~na~~~~~~~G-~G~-------~l~~~~~~~~~~~~~ 428 (497)
-.++|..+++ .+.-+|- .|.|+...|+|||++=-. .=.+..|+++++ .. +|+ .+-++- .-
T Consensus 254 ~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEl-----iQ-- 322 (373)
T PF02684_consen 254 SYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPEL-----IQ-- 322 (373)
T ss_pred hHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhh-----hc--
Confidence 4557888887 6666664 578999999999987321 123445666633 22 121 111100 00
Q ss_pred cccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChH
Q 010940 429 SGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSH 477 (497)
Q Consensus 429 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~ 477 (497)
...+++.|.+++.++++| +..++..+...+.+++..+.|.++.
T Consensus 323 --~~~~~~~i~~~~~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (373)
T PF02684_consen 323 --EDATPENIAAELLELLEN----PEKRKKQKELFREIRQLLGPGASSR 365 (373)
T ss_pred --ccCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHhhhhccCCH
Confidence 138999999999999998 4445445555555555544455543
No 97
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.30 E-value=0.00049 Score=71.56 Aligned_cols=175 Identities=17% Similarity=0.133 Sum_probs=93.8
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHH--hC--CCCEEEEEeCCCCCCCccccccchhHHHHhCCCC---eEeccccch
Q 010940 286 PGSVIYACLGSICGLATWQLLELGLGLE--AS--SQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRG---FIIRGWAPQ 358 (497)
Q Consensus 286 ~~~~V~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~n---v~v~~~~pq 358 (497)
++++|-+--||-...=...+..++++.+ .. ..++++...+... .+.+++.....+ +.+..--..
T Consensus 412 ~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~~---------~~~i~~~~~~~~~~~~~ii~~~~~ 482 (608)
T PRK01021 412 DKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPKY---------DHLILEVLQQEGCLHSHIVPSQFR 482 (608)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchhh---------HHHHHHHHhhcCCCCeEEecCcch
Confidence 4568889899876533445555677765 33 3455553322211 112222221111 122110012
Q ss_pred HHhhhcCCccccccCCCchhHHHHHhhCCceeecccc-ccccchHHHHHHH----H-----cceEEeccccccccccccc
Q 010940 359 VLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLF-AEQFYNEKLAVQV----L-----GIGVSVGIEAAVTWGLEDK 428 (497)
Q Consensus 359 ~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~-~DQ~~na~~~~~~----~-----G~G~~l~~~~~~~~~~~~~ 428 (497)
.+++..+++ .+.-+|- .|.|+...|+|||++=-. .=-...++++.+- . =+|..+-++- .-+.
T Consensus 483 ~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEl-----lqgQ 554 (608)
T PRK01021 483 YELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEF-----IGGK 554 (608)
T ss_pred HHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhh-----cCCc
Confidence 578888887 7777775 478999999999997321 1223456666330 0 1222222211 0000
Q ss_pred cccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 010940 429 SGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLI 484 (497)
Q Consensus 429 ~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~ 484 (497)
...++++|.+++ ++|.|+++.+++++..+++++.+ .+|-.+-+++..+|
T Consensus 555 --~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L----g~~~~~~~~~~~~~ 603 (608)
T PRK01021 555 --KDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM----NESASTMKECLSLI 603 (608)
T ss_pred --ccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh----cCCCCCHHHHHHHH
Confidence 027899999997 88888555556666666666655 44555555555444
No 98
>PLN00142 sucrose synthase
Probab=98.28 E-value=0.00096 Score=72.19 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=36.6
Q ss_pred HHHHHHHHhhHHHHH-HHhhcCCCCcEEEeCCCC--cchHHHHHHcCCCeEEEccc
Q 010940 98 NFFHAASMLKQPFEQ-LFDKLHPRPSCIISGKNL--PWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 98 ~~~~~~~~~~~~l~~-ll~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~ 150 (497)
.++..++.+...+.+ +.++...+||+|.+.+-. ..+..+++++|||.+....+
T Consensus 385 ~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 385 DVWPYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 445556666665443 434444479999999854 35666899999999987655
No 99
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.22 E-value=0.00039 Score=69.68 Aligned_cols=129 Identities=21% Similarity=0.219 Sum_probs=80.4
Q ss_pred eEEEEeeCCCc--C-CCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhC-CCCeEeccccc---hHH
Q 010940 288 SVIYACLGSIC--G-LATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTT-GRGFIIRGWAP---QVL 360 (497)
Q Consensus 288 ~~V~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~p---q~~ 360 (497)
+.|+|++=... . ...+.+..+++++...+.++++........... +-+.+.+... .+|+.+.+-++ ...
T Consensus 202 ~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~----i~~~i~~~~~~~~~v~l~~~l~~~~~l~ 277 (365)
T TIGR03568 202 PYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRI----INEAIEEYVNEHPNFRLFKSLGQERYLS 277 (365)
T ss_pred CEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchH----HHHHHHHHhcCCCCEEEECCCChHHHHH
Confidence 48888885433 3 345778899999988776666665433211100 1112222111 46888887655 455
Q ss_pred hhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEE-eccccccccccccccccccCHHHHH
Q 010940 361 LLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVS-VGIEAAVTWGLEDKSGLVIKREKVK 439 (497)
Q Consensus 361 lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~-l~~~~~~~~~~~~~~~~~~~~~~l~ 439 (497)
++.++++ +|+-++.|- .||.+.|+|.|.+- +-+ .-+ + .|--+. +. .++++|.
T Consensus 278 Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~-~g~nvl~vg----------------~~~~~I~ 330 (365)
T TIGR03568 278 LLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-L-RADSVIDVD----------------PDKEEIV 330 (365)
T ss_pred HHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-h-hcCeEEEeC----------------CCHHHHH
Confidence 8888887 998875554 99999999999874 322 111 2 343332 31 5789999
Q ss_pred HHHHHHHc
Q 010940 440 EAIEKLMD 447 (497)
Q Consensus 440 ~ai~~vl~ 447 (497)
+++.++++
T Consensus 331 ~a~~~~~~ 338 (365)
T TIGR03568 331 KAIEKLLD 338 (365)
T ss_pred HHHHHHhC
Confidence 99999554
No 100
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.20 E-value=0.0006 Score=69.74 Aligned_cols=123 Identities=15% Similarity=0.053 Sum_probs=71.4
Q ss_pred EEEeeCCCcCCCHHhHHHHHHHHHhC----CCCEEEEEeCCCCCCCccccccchhHHHHhCC---CCeEeccccchHHhh
Q 010940 290 IYACLGSICGLATWQLLELGLGLEAS----SQPFIWVIRGGERSQGLEKWIQEEGFEERTTG---RGFIIRGWAPQVLLL 362 (497)
Q Consensus 290 V~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~---~nv~v~~~~pq~~lL 362 (497)
+.+..|-+.. ...+..++++++.. +.--++.+|.+... +.++..... ...++.++.+.++++
T Consensus 230 ~~l~vGRL~~--eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~---------~~L~~~a~~l~l~~~vf~G~~~~~~~~ 298 (462)
T PLN02846 230 GAYYIGKMVW--SKGYKELLKLLHKHQKELSGLEVDLYGSGEDS---------DEVKAAAEKLELDVRVYPGRDHADPLF 298 (462)
T ss_pred EEEEEecCcc--cCCHHHHHHHHHHHHhhCCCeEEEEECCCccH---------HHHHHHHHhcCCcEEEECCCCCHHHHH
Confidence 3344555543 34455666666532 22224556655443 223222221 222355677777789
Q ss_pred hcCCccccccCCC----chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHH
Q 010940 363 SHRAIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKV 438 (497)
Q Consensus 363 ~~~~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l 438 (497)
...++ ||.-+- ..++.||+++|+|+|+.-... + ..+ ..-+-|... -+.+++
T Consensus 299 ~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~-----------------~~~~~~ 353 (462)
T PLN02846 299 HDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY-----------------DDGKGF 353 (462)
T ss_pred HhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec-----------------CCHHHH
Confidence 88877 887743 468999999999999975433 2 222 212333322 246789
Q ss_pred HHHHHHHHcC
Q 010940 439 KEAIEKLMDR 448 (497)
Q Consensus 439 ~~ai~~vl~~ 448 (497)
.++|.++|++
T Consensus 354 a~ai~~~l~~ 363 (462)
T PLN02846 354 VRATLKALAE 363 (462)
T ss_pred HHHHHHHHcc
Confidence 9999999985
No 101
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.16 E-value=0.0034 Score=64.34 Aligned_cols=79 Identities=20% Similarity=0.050 Sum_probs=52.7
Q ss_pred CCCeEeccccchHH---hhhcCCccccccCC---Cc-hhHHHHHhhCCceeeccccccccchHHHHHH---HHcceEEec
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFLTHC---GW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQ---VLGIGVSVG 416 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I~Hg---G~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~---~~G~G~~l~ 416 (497)
.++|.+.+++|+.+ +|..+++ +|+-. |. .++.||+++|+|+|+.-..+. ....+ + .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chhee-eccCCCCceEEe-
Confidence 47899999998754 6777777 55321 22 488999999999997643221 11112 2 23456543
Q ss_pred cccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 417 IEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+++++.++|.++++|
T Consensus 377 ----------------~d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 ----------------STAEEYAEAIEKILSL 392 (419)
T ss_pred ----------------CCHHHHHHHHHHHHhC
Confidence 2578999999999986
No 102
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.14 E-value=0.0041 Score=62.59 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=56.3
Q ss_pred CCCeEecccc--chH---HhhhcCCccccccCC---C-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecc
Q 010940 347 GRGFIIRGWA--PQV---LLLSHRAIGGFLTHC---G-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGI 417 (497)
Q Consensus 347 ~~nv~v~~~~--pq~---~lL~~~~~~~~I~Hg---G-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~ 417 (497)
.+++.+.++. ++. .++..+++ |+..+ | -.++.||+++|+|+|+... ......+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~----~~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPV----GGIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCC----CCchhhc-ccCCceEEeC-
Confidence 4567777776 432 46777777 77543 2 3489999999999998653 2333334 4244565442
Q ss_pred ccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010940 418 EAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQ 461 (497)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~ 461 (497)
+.+.+..+|.++++|++...++.+++++
T Consensus 323 ----------------~~~~~a~~i~~ll~~~~~~~~~~~~a~~ 350 (372)
T cd03792 323 ----------------TVEEAAVRILYLLRDPELRRKMGANARE 350 (372)
T ss_pred ----------------CcHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 2456778999999883333344444444
No 103
>PLN02949 transferase, transferring glycosyl groups
Probab=98.09 E-value=0.011 Score=61.08 Aligned_cols=132 Identities=10% Similarity=0.008 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCC---ccCHHHHHHHHHHHHHCCC--eEEEEeCCCCcch---hhhhHhhhhh-cCCCeeEEEeeCCCccC
Q 010940 8 HQLHFVLIPLMS---PGHLIPMIDMARLLAEHGI--KVTIVTTPLNTTR---FNITIKRAVE-SGLSIQLLQLEFPSVES 78 (497)
Q Consensus 8 ~~~~il~~~~p~---~GHi~P~l~LA~~L~~rGH--~Vt~~~~~~~~~~---~~~~~~~~~~-~~~~i~f~~i~~~~~~~ 78 (497)
++++|+|+-... .|==.-++..+.+|.++|| +|++.|....... +.+....... ......|+.+... +
T Consensus 32 ~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~---~ 108 (463)
T PLN02949 32 RKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKR---K 108 (463)
T ss_pred CCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEeccc---c
Confidence 467787775533 3666788999999999999 7777775432222 1111110000 0001222222100 0
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC-cchHHHHHHcCCCeEEEccchHHH
Q 010940 79 GLPQGCENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL-PWTVNSAIKFKIPTILFDGMGCFA 154 (497)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~~~~~ 154 (497)
-++.. ....+..++.....+.-.++.+.+ . .| .|+.|... .+...+++.++.|++.++..|...
T Consensus 109 ~~~~~--------~~~~~t~~~~~~~~~~l~~~~~~~-~--~p-~v~vDt~~~~~~~pl~~~~~~~v~~yvH~p~~~ 173 (463)
T PLN02949 109 WIEEE--------TYPRFTMIGQSLGSVYLAWEALCK-F--TP-LYFFDTSGYAFTYPLARLFGCKVVCYTHYPTIS 173 (463)
T ss_pred ccccc--------cCCceehHHHHHHHHHHHHHHHHh-c--CC-CEEEeCCCcccHHHHHHhcCCcEEEEEeCCcch
Confidence 01110 012233456666666666776654 2 44 58888865 455667787799999998876544
No 104
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.07 E-value=0.0022 Score=66.66 Aligned_cols=131 Identities=12% Similarity=0.115 Sum_probs=70.0
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHh---CCCCEEEEEeCCCCCCCccccccchhHHHH--hCCCCeE-eccccchH--H
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEA---SSQPFIWVIRGGERSQGLEKWIQEEGFEER--TTGRGFI-IRGWAPQV--L 360 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~nv~-v~~~~pq~--~ 360 (497)
.+++..|.+.. ...+..++++++. .+.++++. |.+... ..+.+++. ..+.++. ..+|-.+. .
T Consensus 283 ~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lviv-G~g~~~-------~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 283 PLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLL-GTGDPE-------LEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred cEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEE-ecCcHH-------HHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 56667777654 2333444555433 34555554 433211 11222211 1134443 34553222 4
Q ss_pred hhhcCCccccccC---CCch-hHHHHHhhCCceeecccc--ccccchHHHHHHHHcceEEeccccccccccccccccccC
Q 010940 361 LLSHRAIGGFLTH---CGWN-STLEGVSAGVPLVTCPLF--AEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIK 434 (497)
Q Consensus 361 lL~~~~~~~~I~H---gG~g-t~~eal~~GvP~v~iP~~--~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~ 434 (497)
++..+++ +|.- -|.| +.+||+++|+|.|+.-.. .|.......- ...+.|..++. -+
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~---------------~d 414 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDD---------------FN 414 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCC---------------CC
Confidence 6777887 6643 3444 788999999999986432 1211111000 11367887765 45
Q ss_pred HHHHHHHHHHHHc
Q 010940 435 REKVKEAIEKLMD 447 (497)
Q Consensus 435 ~~~l~~ai~~vl~ 447 (497)
++++.++|.++++
T Consensus 415 ~~~la~~i~~~l~ 427 (466)
T PRK00654 415 AEDLLRALRRALE 427 (466)
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999886
No 105
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=0.0015 Score=63.81 Aligned_cols=183 Identities=16% Similarity=0.102 Sum_probs=93.7
Q ss_pred hcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhC-----CCCEEEEEeCCCCCCCccccccchhHHHHhCCCCe-
Q 010940 277 CLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEAS-----SQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGF- 350 (497)
Q Consensus 277 l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv- 350 (497)
+.+-+.-..++.++.+--||-..--...+..+.++...+ +.+|++-+.+... +.........+.
T Consensus 178 ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~----------~~~~~~~~~~~~~ 247 (381)
T COG0763 178 AREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY----------RRIIEEALKWEVA 247 (381)
T ss_pred HHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH----------HHHHHHHhhcccc
Confidence 333333333445999999997752223333344443222 3577665543221 111111111111
Q ss_pred Eecccc-ch--HHhhhcCCccccccCCCchhHHHHHhhCCceeecccc-ccccchHHHHHHHHc--------ceEEeccc
Q 010940 351 IIRGWA-PQ--VLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLF-AEQFYNEKLAVQVLG--------IGVSVGIE 418 (497)
Q Consensus 351 ~v~~~~-pq--~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~-~DQ~~na~~~~~~~G--------~G~~l~~~ 418 (497)
...-++ ++ ..++..+++ .+.-+|- -+.|+..+|+|||+.=-. .=-...++++.+ .. +|..+-++
T Consensus 248 ~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPE 323 (381)
T COG0763 248 GLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPE 323 (381)
T ss_pred CceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchH
Confidence 111122 22 226666776 7776675 378999999999986311 111234444422 22 22122111
Q ss_pred cccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Q 010940 419 AAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEF 486 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~ 486 (497)
- -- ...+++.|.+++.+++.|++....+++...++.+.++ ++++++.+.+.+++.
T Consensus 324 l----iq-----~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~ 378 (381)
T COG0763 324 L----IQ-----EDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLEL 378 (381)
T ss_pred H----Hh-----hhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHH
Confidence 0 00 0277999999999999995444566666666666665 344555555555543
No 106
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.99 E-value=0.01 Score=61.85 Aligned_cols=79 Identities=9% Similarity=-0.022 Sum_probs=51.4
Q ss_pred CCCeEeccccchH---HhhhcCCccccccC---CCch-hHHHHHhhCCceeeccccccccchHHHHHHH------HcceE
Q 010940 347 GRGFIIRGWAPQV---LLLSHRAIGGFLTH---CGWN-STLEGVSAGVPLVTCPLFAEQFYNEKLAVQV------LGIGV 413 (497)
Q Consensus 347 ~~nv~v~~~~pq~---~lL~~~~~~~~I~H---gG~g-t~~eal~~GvP~v~iP~~~DQ~~na~~~~~~------~G~G~ 413 (497)
+.++.+....++. .++..+++ +|.- -|.| +.+||+++|+|+|+-...+ ....+ +. .+.|.
T Consensus 345 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~ 417 (473)
T TIGR02095 345 PGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGF 417 (473)
T ss_pred CCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceE
Confidence 3566655545543 36777777 6643 2444 7889999999999765422 22222 21 26787
Q ss_pred EeccccccccccccccccccCHHHHHHHHHHHHc
Q 010940 414 SVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMD 447 (497)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 447 (497)
.++. -+++++.++|.++++
T Consensus 418 l~~~---------------~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 418 LFEE---------------YDPGALLAALSRALR 436 (473)
T ss_pred EeCC---------------CCHHHHHHHHHHHHH
Confidence 7765 468899999999887
No 107
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.97 E-value=0.0011 Score=66.75 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=68.5
Q ss_pred CCCeEeccccchH-HhhhcCCccccccCC--CchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccccc
Q 010940 347 GRGFIIRGWAPQV-LLLSHRAIGGFLTHC--GWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTW 423 (497)
Q Consensus 347 ~~nv~v~~~~pq~-~lL~~~~~~~~I~Hg--G~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~ 423 (497)
..++.+.++.++. .++..+++-++.++. ...++.||+++|+|+|+..... .....+ +.-..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC------
Confidence 4678888777654 488888885555553 3458999999999999864321 233344 43457777765
Q ss_pred ccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 010940 424 GLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIA 466 (497)
Q Consensus 424 ~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~ 466 (497)
-+.+++.++|.++++|++....+.+++.+.++..
T Consensus 330 ---------~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 330 ---------GDIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred ---------CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 3589999999999998555555666666554443
No 108
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=0.0016 Score=63.65 Aligned_cols=322 Identities=16% Similarity=0.168 Sum_probs=169.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCC-CeEEEEeCCCCc--chhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHG-IKVTIVTTPLNT--TRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCE 85 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rG-H~Vt~~~~~~~~--~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~ 85 (497)
++||++ -++++=.++=+-+|.+++.+.+ .+..++.+.... +..... +....++.+..+ + .
T Consensus 3 ~~Kv~~-I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~----------le~~~i~~pdy~--L----~ 65 (383)
T COG0381 3 MLKVLT-IFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV----------LELFGIRKPDYD--L----N 65 (383)
T ss_pred ceEEEE-EEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH----------HHHhCCCCCCcc--h----h
Confidence 455554 4788889999999999999987 676666665554 222211 111122111000 0 0
Q ss_pred CCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCC--CC-cchHHHHHHcCCCeEEEccchHHHHHhhhhhh
Q 010940 86 NMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGK--NL-PWTVNSAIKFKIPTILFDGMGCFACCCTHKLE 162 (497)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~--~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 162 (497)
.... ...+...+......+.+++++. +||+|++.. .+ .++..+|-.++||+.-+-..-
T Consensus 66 i~~~------~~tl~~~t~~~i~~~~~vl~~~--kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl----------- 126 (383)
T COG0381 66 IMKP------GQTLGEITGNIIEGLSKVLEEE--KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL----------- 126 (383)
T ss_pred cccc------CCCHHHHHHHHHHHHHHHHHhh--CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccc-----------
Confidence 0000 1123344455566778888888 999998655 44 355778889999988644320
Q ss_pred hccCCCCcccccCCCCCcccccccccCcccCCCCCcchhHHHHHHHHHhhhccCcEEEEcchHHhhHHHHHHHHhhcCC-
Q 010940 163 ISKVSKFESFVVPGLPHRIELIKAQLPEALNPAGSHVQDLTQVRHNIRAAEQSADGIVVNTFEELEAEYVKEYKRVKGD- 241 (497)
Q Consensus 163 ~~~~~~~~~~~~pgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~- 241 (497)
.+-... +|. ++.++....+. +..+.++-. ....+ .+...++
T Consensus 127 -----Rt~~~~---~PE------------------------E~NR~l~~~~S--~~hfapte~--ar~nL--l~EG~~~~ 168 (383)
T COG0381 127 -----RTGDLY---FPE------------------------EINRRLTSHLS--DLHFAPTEI--ARKNL--LREGVPEK 168 (383)
T ss_pred -----ccCCCC---CcH------------------------HHHHHHHHHhh--hhhcCChHH--HHHHH--HHcCCCcc
Confidence 000111 111 11111111111 111111111 11111 1233334
Q ss_pred cEEEeccCcCCCccchhhhhhccCCCCCCCcCcchhccc-ccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHH----HhCC
Q 010940 242 KVWCIGPVSACNKLNIDKAERCRGENGSTVDDYEQCLKW-LDSWEPGSVIYACLGSICGLATWQLLELGLGL----EASS 316 (497)
Q Consensus 242 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al----~~~~ 316 (497)
+++.+|-....--.. .+. . ...+...... +... .+..+++|+=-..+.. +.+..+.+++ +..
T Consensus 169 ~IfvtGnt~iDal~~----~~~-----~-~~~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~- 235 (383)
T COG0381 169 RIFVTGNTVIDALLN----TRD-----R-VLEDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEY- 235 (383)
T ss_pred ceEEeCChHHHHHHH----HHh-----h-hccchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-
Confidence 577777653221100 000 0 0001111111 2222 2238888765444433 4455555544 333
Q ss_pred CCEEEEEeCCCCCCCccccccchhHH-HHhC-CCCeEec---cccchHHhhhcCCccccccCCCchhHHHHHhhCCceee
Q 010940 317 QPFIWVIRGGERSQGLEKWIQEEGFE-ERTT-GRGFIIR---GWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVT 391 (497)
Q Consensus 317 ~~~i~~~~~~~~~~~~~~~~lp~~~~-~~~~-~~nv~v~---~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~ 391 (497)
..+.+.+....+.. + .++. .... .+|+.+. +|.+...++.++-+ ++|-+| |-.-||-..|+|.++
T Consensus 236 ~~~~viyp~H~~~~------v-~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~ 305 (383)
T COG0381 236 PDVIVIYPVHPRPR------V-RELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLV 305 (383)
T ss_pred CCceEEEeCCCChh------h-hHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEe
Confidence 35555565554421 1 1222 2223 3456654 46678889988877 999888 457899999999999
Q ss_pred ccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 392 CPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 392 iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
+=..-++|. ++ + .|.-+.+. .+.+.|.+++.++++|
T Consensus 306 lR~~TERPE---~v-~-agt~~lvg----------------~~~~~i~~~~~~ll~~ 341 (383)
T COG0381 306 LRDTTERPE---GV-E-AGTNILVG----------------TDEENILDAATELLED 341 (383)
T ss_pred eccCCCCcc---ce-e-cCceEEeC----------------ccHHHHHHHHHHHhhC
Confidence 988888886 33 4 55555543 5679999999999998
No 109
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.90 E-value=0.011 Score=61.58 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=50.6
Q ss_pred CCCeEeccccchH---HhhhcCCccccccC---CCc-hhHHHHHhhCCceeeccccc--cccchHHHHHHHHcceEEecc
Q 010940 347 GRGFIIRGWAPQV---LLLSHRAIGGFLTH---CGW-NSTLEGVSAGVPLVTCPLFA--EQFYNEKLAVQVLGIGVSVGI 417 (497)
Q Consensus 347 ~~nv~v~~~~pq~---~lL~~~~~~~~I~H---gG~-gt~~eal~~GvP~v~iP~~~--DQ~~na~~~~~~~G~G~~l~~ 417 (497)
..|+.+..-.++. .++..+++ ++.- -|. .+.+||+++|+|+|+....+ |.......- ...|.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC
Confidence 4666643333332 36777777 6543 122 36789999999999765422 221111100 12457887765
Q ss_pred ccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 418 EAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+++++.++|.+++++
T Consensus 427 ---------------~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 427 ---------------YNADALLAALRRALAL 442 (476)
T ss_pred ---------------CCHHHHHHHHHHHHHH
Confidence 4589999999998863
No 110
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.87 E-value=0.04 Score=55.51 Aligned_cols=78 Identities=22% Similarity=0.134 Sum_probs=52.2
Q ss_pred CCCeEeccccchHH---hhhcCCccccc------cCCCc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEec
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFL------THCGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVG 416 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I------~HgG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~ 416 (497)
.+||.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|..++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 58999999998665 57778873322 22332 458999999999998753 2222 3233 33332
Q ss_pred cccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 417 IEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
. -+.+++.++|.+++.+
T Consensus 324 ~---------------~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 324 A---------------DDPEEFVAAIEKALLE 340 (373)
T ss_pred C---------------CCHHHHHHHHHHHHhc
Confidence 2 3589999999998764
No 111
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.83 E-value=0.0034 Score=65.45 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=63.1
Q ss_pred CCCeEeccccchHHhhhcCCccccccC----CCchhHHHHHhhCCceeeccccccccchHHHHHHHH-----c-ceEEec
Q 010940 347 GRGFIIRGWAPQVLLLSHRAIGGFLTH----CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVL-----G-IGVSVG 416 (497)
Q Consensus 347 ~~nv~v~~~~pq~~lL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~-----G-~G~~l~ 416 (497)
.+|+.+.+...-..++..+++ +|.. |--.++.||+++|+|+|+- |.......+ +.. | .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC
Confidence 478888886666778888887 5533 2346899999999999984 444444444 432 2 677776
Q ss_pred cccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHH
Q 010940 417 IEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRAR 460 (497)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~ 460 (497)
. -+++++.++|.++++|++...++.++++
T Consensus 426 ~---------------~d~~~la~ai~~ll~~~~~~~~~~~~a~ 454 (475)
T cd03813 426 P---------------ADPEALARAILRLLKDPELRRAMGEAGR 454 (475)
T ss_pred C---------------CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5 4689999999999998333334444443
No 112
>PLN02316 synthase/transferase
Probab=97.81 E-value=0.069 Score=59.76 Aligned_cols=114 Identities=11% Similarity=0.016 Sum_probs=64.4
Q ss_pred CCeEeccccchH---HhhhcCCccccccCC---Cc-hhHHHHHhhCCceeeccccc--cccchH----HH--HHHHHcce
Q 010940 348 RGFIIRGWAPQV---LLLSHRAIGGFLTHC---GW-NSTLEGVSAGVPLVTCPLFA--EQFYNE----KL--AVQVLGIG 412 (497)
Q Consensus 348 ~nv~v~~~~pq~---~lL~~~~~~~~I~Hg---G~-gt~~eal~~GvP~v~iP~~~--DQ~~na----~~--~~~~~G~G 412 (497)
.++.+....+.. .++..+++ |+.-+ |. .+.+||+++|+|.|+.-..+ |..... .+ ....-+-|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 456655444443 46777776 77542 22 48999999999988754321 221110 00 00001457
Q ss_pred EEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q 010940 413 VSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLI 484 (497)
Q Consensus 413 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~ 484 (497)
...+. .+++.|..+|.+++++ |.+....+++..+.++....|-+..+.+.+
T Consensus 978 flf~~---------------~d~~aLa~AL~raL~~------~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~ 1028 (1036)
T PLN02316 978 FSFDG---------------ADAAGVDYALNRAISA------WYDGRDWFNSLCKRVMEQDWSWNRPALDYM 1028 (1036)
T ss_pred EEeCC---------------CCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 66654 5688999999999974 233344455555555544555444444443
No 113
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.78 E-value=0.00049 Score=70.26 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=67.0
Q ss_pred CCCeEeccccchHH---hhhcCCccccccCCC----chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccc
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
..++.+.+|+++.+ ++..+++.+||...- -++++||+++|+|+|+.. -......+ +..+.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i-~~~~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIV-DNGGNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHh-cCCCcEEEeCCC-
Confidence 46788999999765 444444445765543 368999999999999854 34455566 534478777653
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLG 463 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 463 (497)
-+.+++.++|.++++|++....++++|++.-
T Consensus 362 -------------~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~ 392 (407)
T cd04946 362 -------------PTPNELVSSLSKFIDNEEEYQTMREKAREKW 392 (407)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3689999999999998444445555544443
No 114
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00027 Score=57.76 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=71.1
Q ss_pred EEEeeCCCcCCCHHhH--HHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEecccc--c-hHHhhhc
Q 010940 290 IYACLGSICGLATWQL--LELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWA--P-QVLLLSH 364 (497)
Q Consensus 290 V~vs~GS~~~~~~~~~--~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~--p-q~~lL~~ 364 (497)
++||-||....=...+ .++.+-.+.-..++|+++|++.. .| -++..+.+|. + -+.+...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~--------kp--------vagl~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI--------KP--------VAGLRVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc--------cc--------ccccEEEeechHHHHHHHhhc
Confidence 7899999843111111 11222223334589999998543 22 1223344443 3 4557766
Q ss_pred CCccccccCCCchhHHHHHhhCCceeeccccc--------cccchHHHHHHHHcceEEecc
Q 010940 365 RAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFA--------EQFYNEKLAVQVLGIGVSVGI 417 (497)
Q Consensus 365 ~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~--------DQ~~na~~~~~~~G~G~~l~~ 417 (497)
+++ +|+|+|.||+..++.-++|.+++|--. .|-..|..+++ .+.=+...+
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp 123 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP 123 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC
Confidence 776 999999999999999999999999432 37888888866 776665554
No 115
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.55 E-value=0.00044 Score=61.17 Aligned_cols=146 Identities=20% Similarity=0.194 Sum_probs=86.3
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHh-----CCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccch---
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGLEA-----SSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQ--- 358 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq--- 358 (497)
++.+++..|+... ...+..+++++.. ...-.++.+|....... +-..........++.+.+++++
T Consensus 14 ~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~l 86 (172)
T PF00534_consen 14 KKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKE-----LKNLIEKLNLKENIIFLGYVPDDEL 86 (172)
T ss_dssp TSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHH-----HHHHHHHTTCGTTEEEEESHSHHHH
T ss_pred CCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccc-----ccccccccccccccccccccccccc
Confidence 3467777777664 2334445555433 23334444542211100 0011112223578888899873
Q ss_pred HHhhhcCCccccccC----CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccC
Q 010940 359 VLLLSHRAIGGFLTH----CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIK 434 (497)
Q Consensus 359 ~~lL~~~~~~~~I~H----gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~ 434 (497)
..++..+++ +|+. |...++.||+++|+|+|+- |...+...+ ...+.|..++. -+
T Consensus 87 ~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~---------------~~ 144 (172)
T PF00534_consen 87 DELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP---------------ND 144 (172)
T ss_dssp HHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST---------------TS
T ss_pred cccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC---------------CC
Confidence 447878887 7766 5567999999999999974 455555555 54556888876 46
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHH
Q 010940 435 REKVKEAIEKLMDRGKQGEKRRKRARQ 461 (497)
Q Consensus 435 ~~~l~~ai~~vl~~~~~~~~~~~~a~~ 461 (497)
.+++.++|.++++|++....+++++++
T Consensus 145 ~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 145 IEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 899999999999984444444444443
No 116
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.53 E-value=0.0032 Score=63.99 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=67.2
Q ss_pred CCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHH-HhCCCCeEeccccchHHhh--
Q 010940 286 PGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEE-RTTGRGFIIRGWAPQVLLL-- 362 (497)
Q Consensus 286 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~-~~~~~nv~v~~~~pq~~lL-- 362 (497)
++-++|.||.+....+++.+....+.|+..+...+|......... .. +-..+.+ -...+++.+.++.|+.+.|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~---~~-l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~ 358 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGE---AR-LRRRFAAHGVDPDRIIFSPVAPREEHLRR 358 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHH---HH-HHHHHHHTTS-GGGEEEEE---HHHHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHH---HH-HHHHHHHcCCChhhEEEcCCCCHHHHHHH
Confidence 344999999999999999999999999999999999876543210 00 1112221 1234667777777765544
Q ss_pred -hcCCccccc---cCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceE
Q 010940 363 -SHRAIGGFL---THCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGV 413 (497)
Q Consensus 363 -~~~~~~~~I---~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~ 413 (497)
..+++ ++ ..+|..|++|||+.|||+|.+|--.=.-..++-+-..+|+.-
T Consensus 359 ~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~E 411 (468)
T PF13844_consen 359 YQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPE 411 (468)
T ss_dssp GGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GG
T ss_pred hhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCch
Confidence 33444 43 467889999999999999999943222333333325466663
No 117
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.52 E-value=0.018 Score=60.23 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=85.2
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHh----CCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhc
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEA----SSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSH 364 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~ 364 (497)
.++++.|.+.. ...+..+++|++. .+.--++.+|.+..... +.+-..+....++|...++.+...++..
T Consensus 320 ~~il~vGrl~~--~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~-----l~~~i~~~~l~~~V~f~G~~~~~~~~~~ 392 (500)
T TIGR02918 320 FSIITASRLAK--EKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQK-----LQKIINENQAQDYIHLKGHRNLSEVYKD 392 (500)
T ss_pred eEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHH-----HHHHHHHcCCCCeEEEcCCCCHHHHHHh
Confidence 55667777653 2344445565533 22222334554432111 1111111112467888899888889998
Q ss_pred CCcccccc---CCCc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccC-HHHHH
Q 010940 365 RAIGGFLT---HCGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIK-REKVK 439 (497)
Q Consensus 365 ~~~~~~I~---HgG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~-~~~l~ 439 (497)
+++ +|. .=|. .++.||+++|+|+|+.-.. ......+ +.-.-|..++... + ..+ .-+ .+++.
T Consensus 393 adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI-~~g~nG~lv~~~~--~--~~d----~~~~~~~la 458 (500)
T TIGR02918 393 YEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFI-EDNKNGYLIPIDE--E--EDD----EDQIITALA 458 (500)
T ss_pred CCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHc-cCCCCEEEEeCCc--c--ccc----hhHHHHHHH
Confidence 888 554 2343 5899999999999996432 1233344 4233566665210 0 000 012 67899
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHH
Q 010940 440 EAIEKLMDRGKQGEKRRKRARQLGEI 465 (497)
Q Consensus 440 ~ai~~vl~~~~~~~~~~~~a~~~~~~ 465 (497)
++|.+++++ +....+.+++.+.++.
T Consensus 459 ~~I~~ll~~-~~~~~~~~~a~~~a~~ 483 (500)
T TIGR02918 459 EKIVEYFNS-NDIDAFHEYSYQIAEG 483 (500)
T ss_pred HHHHHHhCh-HHHHHHHHHHHHHHHh
Confidence 999999953 3344555666554443
No 118
>PRK14099 glycogen synthase; Provisional
Probab=97.33 E-value=0.23 Score=51.83 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=30.8
Q ss_pred CCcEEEEEcCC------CccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 8 HQLHFVLIPLM------SPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 8 ~~~~il~~~~p------~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
++|||++++.- +.|=-.-.-+|.++|+++||+|.++.|-.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 46799999863 23444556788899999999999999864
No 119
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.28 E-value=0.018 Score=52.75 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=35.7
Q ss_pred CCCeEeccccch-H---HhhhcCCccccccCCC----chhHHHHHhhCCceeeccccccc
Q 010940 347 GRGFIIRGWAPQ-V---LLLSHRAIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFAEQ 398 (497)
Q Consensus 347 ~~nv~v~~~~pq-~---~lL~~~~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~DQ 398 (497)
..|+.+.+++++ + .++..+++ +|+-.. .+++.||+.+|+|+|+.+..+.+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 467888888632 2 23333666 777765 68999999999999998865543
No 120
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.11 E-value=0.036 Score=55.98 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=57.2
Q ss_pred CCCeEeccccchHH---hhhcCCccccccC----CCc-hhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccc
Q 010940 347 GRGFIIRGWAPQVL---LLSHRAIGGFLTH----CGW-NSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIE 418 (497)
Q Consensus 347 ~~nv~v~~~~pq~~---lL~~~~~~~~I~H----gG~-gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~ 418 (497)
..++.+.+++|+.+ ++..+++ +|.. -|. .++.||+++|+|+|+... ..+...+ +.-..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv-~~~~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFV-LEGITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhc-ccCCceEEEeCC
Confidence 46788889998654 5877887 5543 333 578899999999999754 2344444 434457644221
Q ss_pred cccccccccccccccCHHHHHHHHHHHHcC
Q 010940 419 AAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
.+++++.++|.++++|
T Consensus 329 --------------~d~~~la~~I~~ll~d 344 (380)
T PRK15484 329 --------------MTSDSIISDINRTLAD 344 (380)
T ss_pred --------------CCHHHHHHHHHHHHcC
Confidence 4689999999999998
No 121
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.08 E-value=0.33 Score=51.85 Aligned_cols=75 Identities=11% Similarity=0.029 Sum_probs=51.1
Q ss_pred CeEeccccchH-HhhhcCCccccccCC---C-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccccc
Q 010940 349 GFIIRGWAPQV-LLLSHRAIGGFLTHC---G-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTW 423 (497)
Q Consensus 349 nv~v~~~~pq~-~lL~~~~~~~~I~Hg---G-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~ 423 (497)
++.+.++.++. .++..+++ ||.-+ | ..++.||+++|+|+|+.-..+... + . .|.+..+.
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~-~g~nGll~------- 665 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-R-SFPNCLTY------- 665 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-e-ecCCeEec-------
Confidence 36666777755 48888887 76533 3 368999999999999987654321 2 2 23222221
Q ss_pred ccccccccccCHHHHHHHHHHHHcC
Q 010940 424 GLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 424 ~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+.+++.++|.++|+|
T Consensus 666 ---------~D~EafAeAI~~LLsd 681 (794)
T PLN02501 666 ---------KTSEDFVAKVKEALAN 681 (794)
T ss_pred ---------CCHHHHHHHHHHHHhC
Confidence 2578999999999987
No 122
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.06 E-value=0.45 Score=48.49 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=65.0
Q ss_pred EEEeeCCCcCCCHHhHHHHHHHHHhCCCCE-EEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccc-h---HHhhhc
Q 010940 290 IYACLGSICGLATWQLLELGLGLEASSQPF-IWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAP-Q---VLLLSH 364 (497)
Q Consensus 290 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p-q---~~lL~~ 364 (497)
+++..|.........+..+++++...+..+ ++..|.+... . ..++...++.. + ..++..
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~-------~---------~~~v~~~g~~~~~~~l~~~y~~ 306 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF-------T---------AGNVVNHGFETDKRKLMSALNQ 306 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc-------c---------ccceEEecCcCCHHHHHHHHHh
Confidence 334445422222233566888888765443 3444533211 1 24555556653 2 335555
Q ss_pred CCccccccCCC----chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHH
Q 010940 365 RAIGGFLTHCG----WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKE 440 (497)
Q Consensus 365 ~~~~~~I~HgG----~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (497)
+++ ||.-.= -.++.||+++|+|+|+....+ ....+ + .+-|..++.. +.++|.+
T Consensus 307 aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~-~~~G~lv~~~---------------d~~~La~ 363 (405)
T PRK10125 307 MDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-Q-KSGGKTVSEE---------------EVLQLAQ 363 (405)
T ss_pred CCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-e-CCcEEEECCC---------------CHHHHHh
Confidence 776 665432 368999999999999986643 33333 4 3568888763 4677776
Q ss_pred HH
Q 010940 441 AI 442 (497)
Q Consensus 441 ai 442 (497)
++
T Consensus 364 ~~ 365 (405)
T PRK10125 364 LS 365 (405)
T ss_pred cc
Confidence 54
No 123
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.87 E-value=0.0042 Score=52.42 Aligned_cols=80 Identities=26% Similarity=0.358 Sum_probs=49.7
Q ss_pred CCCeEeccccch-HHhhhcCCccccccC--CC-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccc
Q 010940 347 GRGFIIRGWAPQ-VLLLSHRAIGGFLTH--CG-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVT 422 (497)
Q Consensus 347 ~~nv~v~~~~pq-~~lL~~~~~~~~I~H--gG-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~ 422 (497)
.+|+.+.+|+++ ..++..+++.+..+. .| .+++.|++++|+|+|+.+.. ..... +..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE-C-----
Confidence 369999999974 337888888665542 23 48999999999999998761 22223 336777766 3
Q ss_pred cccccccccccCHHHHHHHHHHHHcC
Q 010940 423 WGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+++++.++|.++++|
T Consensus 120 ----------~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 ----------NDPEELAEAIERLLND 135 (135)
T ss_dssp ----------T-HHHHHHHHHHHHH-
T ss_pred ----------CCHHHHHHHHHHHhcC
Confidence 3689999999999875
No 124
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.62 E-value=0.021 Score=48.41 Aligned_cols=103 Identities=17% Similarity=0.279 Sum_probs=66.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKL 90 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~ 90 (497)
||++++.....| ...+++.|.++||+|++++.....+... ...++.+..++.+ ..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~--------~~~~i~~~~~~~~------------~k-- 55 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYE--------IIEGIKVIRLPSP------------RK-- 55 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhh--------HhCCeEEEEecCC------------CC--
Confidence 477777766666 4577999999999999999854432222 1227787777421 00
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcc---hHHHHHHcC-CCeEEEcc
Q 010940 91 PSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPW---TVNSAIKFK-IPTILFDG 149 (497)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~---~~~~A~~lg-iP~v~~~~ 149 (497)
..+ ..+ . +. .+.+++++. +||+|.+...... +..++...| +|++....
T Consensus 56 ---~~~-~~~---~-~~-~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 56 ---SPL-NYI---K-YF-RLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred ---ccH-HHH---H-HH-HHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 001 111 1 12 678888888 9999988886542 233567778 89886444
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.62 E-value=0.072 Score=52.34 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=38.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCcchhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~ 53 (497)
||+++-....|++.=+.++.++|+++ +.+|++++.+.+.+.++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 58999999999999999999999998 99999999987766655
No 126
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.45 E-value=1.3 Score=45.32 Aligned_cols=178 Identities=9% Similarity=0.101 Sum_probs=95.8
Q ss_pred cccccCCCCCeEEEEeeCCCcCC------C----HHhHHHHHHHHHhCCCCEEEEEeCCC----CCCCccccccchhHHH
Q 010940 278 LKWLDSWEPGSVIYACLGSICGL------A----TWQLLELGLGLEASSQPFIWVIRGGE----RSQGLEKWIQEEGFEE 343 (497)
Q Consensus 278 ~~~l~~~~~~~~V~vs~GS~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~----~~~~~~~~~lp~~~~~ 343 (497)
..|+.....+++|-|+.-.-... . .+.+.++++.+...++++++..--.. ..++.. .-..+.+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~---~~~~l~~ 301 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRM---VALNLRQ 301 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHH---HHHHHHH
Confidence 34554323344777775543311 1 12334455556556888776643211 011000 1123334
Q ss_pred HhCC-CCeE--eccccchH--HhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEE-ecc
Q 010940 344 RTTG-RGFI--IRGWAPQV--LLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVS-VGI 417 (497)
Q Consensus 344 ~~~~-~nv~--v~~~~pq~--~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~-l~~ 417 (497)
.+.. .++. ..++-+.+ .+++++++ +|..==+ ++.-|+..|||.+.++. |+ .....+ +.+|..-. ++.
T Consensus 302 ~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~~-K~~~~~-~~lg~~~~~~~~ 374 (426)
T PRK10017 302 HVSDPARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--EH-KSAGIM-QQLGLPEMAIDI 374 (426)
T ss_pred hcccccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--hH-HHHHHH-HHcCCccEEech
Confidence 3332 2222 22233443 67877776 7753222 45568999999999997 43 334444 55888755 555
Q ss_pred ccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 010940 418 EAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFV 487 (497)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~ 487 (497)
.. ++.++|.+.+.++++| .+++++..++-.+.+++. ..+.+.++|+.+
T Consensus 375 ~~-------------l~~~~Li~~v~~~~~~---r~~~~~~l~~~v~~~r~~------~~~~~~~~~~~~ 422 (426)
T PRK10017 375 RH-------------LLDGSLQAMVADTLGQ---LPALNARLAEAVSRERQT------GMQMVQSVLERI 422 (426)
T ss_pred hh-------------CCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHh
Confidence 54 8899999999999998 344555444444444322 233555555543
No 127
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.37 E-value=0.0046 Score=48.77 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=46.4
Q ss_pred cchhcccccCCCCCeEEEEeeCCCcCC---C--HHhHHHHHHHHHhCCCCEEEEEeCCCC
Q 010940 274 YEQCLKWLDSWEPGSVIYACLGSICGL---A--TWQLLELGLGLEASSQPFIWVIRGGER 328 (497)
Q Consensus 274 ~~~l~~~l~~~~~~~~V~vs~GS~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~~~ 328 (497)
+..+..|+...+.++.|+||+||.... . ...+..++++++.++..+|+.++....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 567788999998999999999998873 2 257888999999999999999886654
No 128
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.056 Score=55.38 Aligned_cols=117 Identities=17% Similarity=0.234 Sum_probs=83.1
Q ss_pred CCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHH-----HhCCCCeEeccccchH
Q 010940 285 EPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEE-----RTTGRGFIIRGWAPQV 359 (497)
Q Consensus 285 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~nv~v~~~~pq~ 359 (497)
+++-+||+||+-.....++.+..-++-|+..+..++|..+++.+.+ +-..++. -+...+.++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~------~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE------INARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH------HHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 3455999999999999999999999999999999999998865432 1122221 1335667776666644
Q ss_pred ---HhhhcCCccccc---cCCCchhHHHHHhhCCceeeccccccccc--hHHHHHHHHcc
Q 010940 360 ---LLLSHRAIGGFL---THCGWNSTLEGVSAGVPLVTCPLFAEQFY--NEKLAVQVLGI 411 (497)
Q Consensus 360 ---~lL~~~~~~~~I---~HgG~gt~~eal~~GvP~v~iP~~~DQ~~--na~~~~~~~G~ 411 (497)
+-+..+++ |. --||.-|+.|+|..|||+|..+ ++|+- |+.-++..+|+
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi 556 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGI 556 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCC
Confidence 34444565 65 4699999999999999999987 77763 44455443443
No 129
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.08 E-value=0.036 Score=54.91 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=74.8
Q ss_pred CCCeEeccccchHHhhhc--CCccccccCC-------C------chhHHHHHhhCCceeeccccccccchHHHHHHHHcc
Q 010940 347 GRGFIIRGWAPQVLLLSH--RAIGGFLTHC-------G------WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGI 411 (497)
Q Consensus 347 ~~nv~v~~~~pq~~lL~~--~~~~~~I~Hg-------G------~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~ 411 (497)
.+|+.+.+|+|++++..+ .+.+++...- . -+-+.+++++|+|+|+. ++...+..+ ++.++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENGL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCCc
Confidence 478999999998876432 1332222211 1 12377889999999984 456677777 66899
Q ss_pred eEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Q 010940 412 GVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIE 485 (497)
Q Consensus 412 G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~ 485 (497)
|+.++. .+++.+++.++.+ +....|++|++++++.++. |.-..+++.+++.
T Consensus 281 G~~v~~-----------------~~el~~~l~~~~~--~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 281 GFVVDS-----------------LEELPEIIDNITE--EEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred eEEeCC-----------------HHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 998852 4578888887542 4567899999999999872 4444444444443
No 130
>PLN02939 transferase, transferring glycosyl groups
Probab=96.06 E-value=3.3 Score=46.18 Aligned_cols=84 Identities=7% Similarity=0.070 Sum_probs=52.5
Q ss_pred CCCeEeccccchH---HhhhcCCccccccCC---C-chhHHHHHhhCCceeeccccc--cccch--HHHHHHHHcceEEe
Q 010940 347 GRGFIIRGWAPQV---LLLSHRAIGGFLTHC---G-WNSTLEGVSAGVPLVTCPLFA--EQFYN--EKLAVQVLGIGVSV 415 (497)
Q Consensus 347 ~~nv~v~~~~pq~---~lL~~~~~~~~I~Hg---G-~gt~~eal~~GvP~v~iP~~~--DQ~~n--a~~~~~~~G~G~~l 415 (497)
.++|.+..+.+.. .++..+++ ||.-+ | -.+.+||+++|+|.|+....+ |.... ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4578887887764 47877777 77532 2 247999999999998865432 22111 11110112456655
Q ss_pred ccccccccccccccccccCHHHHHHHHHHHHc
Q 010940 416 GIEAAVTWGLEDKSGLVIKREKVKEAIEKLMD 447 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 447 (497)
+. .+++++.++|.++++
T Consensus 914 ~~---------------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT---------------PDEQGLNSALERAFN 930 (977)
T ss_pred cC---------------CCHHHHHHHHHHHHH
Confidence 54 468889998888774
No 131
>PHA01633 putative glycosyl transferase group 1
Probab=95.85 E-value=0.14 Score=50.39 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=54.6
Q ss_pred CCCeEec---cccchH---HhhhcCCccccccCC---Cc-hhHHHHHhhCCceeeccc------cccc------cchHHH
Q 010940 347 GRGFIIR---GWAPQV---LLLSHRAIGGFLTHC---GW-NSTLEGVSAGVPLVTCPL------FAEQ------FYNEKL 404 (497)
Q Consensus 347 ~~nv~v~---~~~pq~---~lL~~~~~~~~I~Hg---G~-gt~~eal~~GvP~v~iP~------~~DQ------~~na~~ 404 (497)
.+++.+. +++++. .++..+++ ||.-+ |. .++.||+++|+|+|+--. .+|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4678877 455554 46777777 77542 43 578999999999998632 2332 223332
Q ss_pred HHH-HHcceEEeccccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 405 AVQ-VLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 405 ~~~-~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
.++ ..|.|..++. .+++++.++|.++++.
T Consensus 278 ~~~~~~g~g~~~~~---------------~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEHGQKWKIHK---------------FQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcccCceeeecC---------------CCHHHHHHHHHHHHhc
Confidence 221 2456655543 6899999999999653
No 132
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.41 E-value=0.13 Score=53.06 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=82.1
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHH-----HhCCCCeEeccccchH--
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEE-----RTTGRGFIIRGWAPQV-- 359 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~nv~v~~~~pq~-- 359 (497)
+-+||++|--....+++.++...+.|+.-+..++|.....-.-+ ..|+. -..++.|++.+-..-.
T Consensus 758 d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--------~rf~ty~~~~Gl~p~riifs~va~k~eH 829 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--------QRFRTYAEQLGLEPDRIIFSPVAAKEEH 829 (966)
T ss_pred CeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--------HHHHHHHHHhCCCccceeeccccchHHH
Confidence 33899999888889999999999999999999999987543211 11211 1235667766554422
Q ss_pred ---HhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccc
Q 010940 360 ---LLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIE 418 (497)
Q Consensus 360 ---~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~ 418 (497)
..|..-.++-+.+. |.-|.++.|+.|||||.+|.-.--...|.-+...+|+|-.+.++
T Consensus 830 vrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~ 890 (966)
T KOG4626|consen 830 VRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKN 890 (966)
T ss_pred HHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhh
Confidence 23333333335555 78899999999999999997544444444333458888755543
No 133
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.10 E-value=0.035 Score=47.68 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHHHHHH
Q 010940 24 IPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNFFHAA 103 (497)
Q Consensus 24 ~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (497)
.-+..|+++|.++||+|+++++......-+ ....++.+..++.+... ..... ...
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~---~~~-------- 59 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDE-------EEEDGVRVHRLPLPRRP-------WPLRL---LRF-------- 59 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-S-------EEETTEEEEEE--S-SS-------SGGGH---CCH--------
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccc-------cccCCceEEeccCCccc-------hhhhh---HHH--------
Confidence 346789999999999999999765444221 12226888877643111 00000 011
Q ss_pred HHhhHHHHHHH--hhcCCCCcEEEeCCCC-cchHHHHH-HcCCCeEEEcc
Q 010940 104 SMLKQPFEQLF--DKLHPRPSCIISGKNL-PWTVNSAI-KFKIPTILFDG 149 (497)
Q Consensus 104 ~~~~~~l~~ll--~~~~~~pDlvI~D~~~-~~~~~~A~-~lgiP~v~~~~ 149 (497)
...+..++ ++. +||+|.+.... .....+++ ..++|++....
T Consensus 60 ---~~~~~~~l~~~~~--~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 60 ---LRRLRRLLAARRE--RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp ---HHHHHHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred ---HHHHHHHHhhhcc--CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 12334444 455 99999988733 22333445 78999988554
No 134
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.10 E-value=0.63 Score=48.73 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=46.0
Q ss_pred CCCeEeccccch-HHhhhcCCccccccC---CC-chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccc
Q 010940 347 GRGFIIRGWAPQ-VLLLSHRAIGGFLTH---CG-WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIE 418 (497)
Q Consensus 347 ~~nv~v~~~~pq-~~lL~~~~~~~~I~H---gG-~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~ 418 (497)
.+++.+.+|..+ ..+|..+++ ||.. -| -+++.||+++|+|+|+... ..+...+ +.-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC
Confidence 478999888654 347888887 7753 44 4699999999999997653 3455555 435567777653
No 135
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=94.99 E-value=2.4 Score=42.22 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=42.2
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCcchhh
Q 010940 6 PAHQLHFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 6 ~~~~~~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~ 53 (497)
+..++||+++-....|++.=..++.+.|+++ +.+|++++.+.+.+.++
T Consensus 2 ~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 51 (352)
T PRK10422 2 DKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILS 51 (352)
T ss_pred CCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhc
Confidence 3457899999999999999999999999997 89999999987776554
No 136
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=94.84 E-value=3.6 Score=40.93 Aligned_cols=104 Identities=10% Similarity=0.013 Sum_probs=66.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
|||+++-..+.|++.=...+.+.|+++ +.+|++++.+.+.+.++.. +.++-.-. ++ ...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~-~~-----~~~----- 61 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIP-MP-----LGH----- 61 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEe-cc-----ccc-----
Confidence 479999999999999999999999996 8999999988776655522 23332111 11 000
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEE
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTIL 146 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 146 (497)
. .. .+ . ... .+...++.. ++|++|.=....-...++...|+|.-.
T Consensus 62 -~---~~---~~-~---~~~-~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 62 -G---AL---EI-G---ERR-RLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -c---hh---hh-H---HHH-HHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 00 00 0 111 122334555 999999766555556677777887654
No 137
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.84 E-value=3.9 Score=39.18 Aligned_cols=111 Identities=15% Similarity=0.214 Sum_probs=71.7
Q ss_pred cCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhH
Q 010940 16 PLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDL 95 (497)
Q Consensus 16 ~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~ 95 (497)
=..-.-|+.-|-.|-.+|.++||+|.+-+-+... +...+ .-.||.+..+.-. -+ ...
T Consensus 6 DI~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~--v~~LL-----d~ygf~~~~Igk~-------g~---------~tl 62 (346)
T COG1817 6 DIGNPPHVHFFKNLIWELEKKGHEVLITCRDFGV--VTELL-----DLYGFPYKSIGKH-------GG---------VTL 62 (346)
T ss_pred EcCCcchhhHHHHHHHHHHhCCeEEEEEEeecCc--HHHHH-----HHhCCCeEeeccc-------CC---------ccH
Confidence 3455668889999999999999999887744321 12221 1127777777411 00 011
Q ss_pred HHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccchHH
Q 010940 96 IKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMGCF 153 (497)
Q Consensus 96 ~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 153 (497)
...+... ..-...+.++..+. +||+.+. -.++....+|-.+|+|.+.+.-+...
T Consensus 63 ~~Kl~~~-~eR~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 63 KEKLLES-AERVYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred HHHHHHH-HHHHHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 1122222 22234477888888 9999999 55678888999999999997766443
No 138
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.80 E-value=0.38 Score=42.24 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=56.0
Q ss_pred HCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHHHHHHHHhhHHHHHHH
Q 010940 35 EHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNFFHAASMLKQPFEQLF 114 (497)
Q Consensus 35 ~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 114 (497)
++||+|++++........ .|++...+..+ ... ....-.....+.............+.++.
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~-------~~~-~~~~~~~~~~~e~~~~rg~av~~a~~~L~ 61 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPP-------RGP-TPGTHPYVRDFEAAVLRGQAVARAARQLR 61 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCC-------CCC-CCCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 479999999955433321 27777777532 110 00000011122222333455556666665
Q ss_pred hhcCCCCcEEEeCCCCcchHHHHHHc-CCCeEEEccc
Q 010940 115 DKLHPRPSCIISGKNLPWTVNSAIKF-KIPTILFDGM 150 (497)
Q Consensus 115 ~~~~~~pDlvI~D~~~~~~~~~A~~l-giP~v~~~~~ 150 (497)
++ ...||+||++.-...+.-+-..+ ++|.+.++=.
T Consensus 62 ~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 62 AQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred Hc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 55 66899999999655555567777 9999887643
No 139
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.46 E-value=4.1 Score=39.74 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=34.0
Q ss_pred chHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccc
Q 010940 357 PQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFA 396 (497)
Q Consensus 357 pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~ 396 (497)
|+...|..++. +|||=--.+-++||+..|+|+.++|.-.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 67788888887 6777777899999999999999999876
No 140
>PRK14098 glycogen synthase; Provisional
Probab=94.03 E-value=0.82 Score=47.83 Aligned_cols=80 Identities=11% Similarity=0.033 Sum_probs=52.5
Q ss_pred CCCeEeccccchH---HhhhcCCccccccCC---Cc-hhHHHHHhhCCceeeccccc--cccchHHHHHHHHcceEEecc
Q 010940 347 GRGFIIRGWAPQV---LLLSHRAIGGFLTHC---GW-NSTLEGVSAGVPLVTCPLFA--EQFYNEKLAVQVLGIGVSVGI 417 (497)
Q Consensus 347 ~~nv~v~~~~pq~---~lL~~~~~~~~I~Hg---G~-gt~~eal~~GvP~v~iP~~~--DQ~~na~~~~~~~G~G~~l~~ 417 (497)
+.++.+...++.. .+++.+++ |+..+ |. .+.+||+++|+|.|+....+ |.... .. +.-+-|...+.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~~ 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFHD 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeCC
Confidence 4678888888764 47777787 66433 22 37789999999888765422 22111 11 11356776654
Q ss_pred ccccccccccccccccCHHHHHHHHHHHH
Q 010940 418 EAAVTWGLEDKSGLVIKREKVKEAIEKLM 446 (497)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 446 (497)
.+++++.++|.+++
T Consensus 436 ---------------~d~~~la~ai~~~l 449 (489)
T PRK14098 436 ---------------YTPEALVAKLGEAL 449 (489)
T ss_pred ---------------CCHHHHHHHHHHHH
Confidence 46899999999876
No 141
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=93.85 E-value=5.4 Score=39.52 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=66.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCcchhhhhHhhhhhcCCCee-EEEeeCCCccCCCCCCCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRFNITIKRAVESGLSIQ-LLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~-f~~i~~~~~~~~~~~~~~~~ 87 (497)
||+++-....|++.=+.++.++|+++ +.+|++++.+.+.+.++.. +.++ +..++.. ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~-----------~~ 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRK-----------KA 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChh-----------hh
Confidence 58999999999999999999999997 8999999998776655422 2332 2333200 00
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEE
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTIL 146 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 146 (497)
. .....+ ..... +...++.. ++|++|.-........++...|.|.-.
T Consensus 62 ---~--~~~~~~----~~~~~-l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 62 ---K--AGERKL----ANQFH-LIKVLRAN--RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---c--chHHHH----HHHHH-HHHHHHhC--CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0 000011 11112 22334555 999999665555566778888888654
No 142
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.79 E-value=3.7 Score=40.30 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=38.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCcchh
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRF 52 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~~~~ 52 (497)
|||+++-....|++.=..++.+.|+++ +.+|++++.+.+.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 489999999999999999999999997 9999999988665544
No 143
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.26 E-value=6 Score=39.00 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=37.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCcchhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~ 53 (497)
||+++-..+.|++.=..++.++|++. +.+|++++.+.+.+.++
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 45 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLE 45 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHh
Confidence 58999999999999999999999997 89999999876655444
No 144
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.00 E-value=1 Score=39.62 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=61.6
Q ss_pred EcCCCccCHHHHHHHHHHH-HHC-CCeEEEEeCCCCcch--hhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCC
Q 010940 15 IPLMSPGHLIPMIDMARLL-AEH-GIKVTIVTTPLNTTR--FNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKL 90 (497)
Q Consensus 15 ~~~p~~GHi~P~l~LA~~L-~~r-GH~Vt~~~~~~~~~~--~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~ 90 (497)
+..++.||..=++.|.+.+ .++ .++..+++....... ++..-. .......+..+|-. ...
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~---~~~~~~~~~~~~r~-------------r~v 66 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEK---SSSKRHKILEIPRA-------------REV 66 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHH---hccccceeeccceE-------------EEe
Confidence 4467899999999999999 444 455555554433322 111100 00001123333210 000
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC--cchHHHHHHc------CCCeEEEcc
Q 010940 91 PSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL--PWTVNSAIKF------KIPTILFDG 149 (497)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~--~~~~~~A~~l------giP~v~~~~ 149 (497)
. .......+.....+...+.-+.++ +||+||+..-- ...+.+|..+ |.++|.+=+
T Consensus 67 ~-q~~~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 67 G-QSYLTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred c-hhhHhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 0 011222334444455555555555 99999998844 4556678888 888887543
No 145
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.97 E-value=7.6 Score=37.14 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=38.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCCCcchhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHG--IKVTIVTTPLNTTRFN 53 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rG--H~Vt~~~~~~~~~~~~ 53 (497)
||+++-....|++.-+.++.++|+++. -+|++++.+.+.+.++
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~ 45 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE 45 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh
Confidence 589999999999999999999999974 8999999997766555
No 146
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=92.96 E-value=0.81 Score=35.48 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=36.5
Q ss_pred CCCchhHHHHHhhCCceeeccccccccchHHHHHHHHc-ceEEeccccccccccccccccccCHHHHHHHHHHHHcC
Q 010940 373 HCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLG-IGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 373 HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G-~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
+|-..-+.|++++|+|+|.-.. ......+ + -| -++.. -+.+++.++|..+++|
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~-~~~~~~~~-----------------~~~~el~~~i~~ll~~ 62 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-E-DGEHIITY-----------------NDPEELAEKIEYLLEN 62 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-C-CCCeEEEE-----------------CCHHHHHHHHHHHHCC
Confidence 4455689999999999998754 2222222 2 23 22222 2589999999999999
No 147
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.27 E-value=0.33 Score=42.26 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=25.1
Q ss_pred CCccCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Q 010940 18 MSPGHLIPMIDMARLLAEHGIKVTIVTTPLNT 49 (497)
Q Consensus 18 p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (497)
...|=-.-.+.|+++|+++||+|+++++....
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 35567778899999999999999999877443
No 148
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.82 E-value=18 Score=35.72 Aligned_cols=104 Identities=14% Similarity=0.185 Sum_probs=67.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
++|+++-....|++.=.+++-..|+++ +.++++++.+.+.+.+... +.++-+-.- ..
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~--------~~----- 60 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIII--------DK----- 60 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccc--------cc-----
Confidence 589999999999999999999999998 5999999999776655432 111111110 00
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEE
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTIL 146 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 146 (497)
... . .. + .-...+.+.++.. ++|+||.=.-.+-...++...++|.-.
T Consensus 61 ~~~---~--~~-~----~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 61 KKK---G--LG-L----KERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ccc---c--cc-h----HHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 000 0 00 0 1112244445555 899999887766666677778887654
No 149
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.46 E-value=0.8 Score=38.77 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=46.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEee
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLE 72 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~ 72 (497)
|++++|++.+.++-+|-.-..-++..|.++|++|+++...--.+.+.... ...+.++..++
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a-----~~~~~d~V~lS 61 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA-----IETDADAILVS 61 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----HHcCCCEEEEc
Confidence 46789999999999999999999999999999999998765544444332 22245565553
No 150
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=90.22 E-value=2.3 Score=44.04 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=66.5
Q ss_pred eccccchHH---hhhcCCcccccc---CCCch-hHHHHHhhCCc----eeeccccccccchHHHHHHHHcceEEeccccc
Q 010940 352 IRGWAPQVL---LLSHRAIGGFLT---HCGWN-STLEGVSAGVP----LVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAA 420 (497)
Q Consensus 352 v~~~~pq~~---lL~~~~~~~~I~---HgG~g-t~~eal~~GvP----~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~ 420 (497)
+...+++.+ ++..+++ ||. +=|+| +..||+++|+| +|+--+. ..+..+ +-|+.+++
T Consensus 340 l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~----G~~~~l----~~gllVnP--- 406 (456)
T TIGR02400 340 LNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFA----GAAQEL----NGALLVNP--- 406 (456)
T ss_pred EcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCC----CChHHh----CCcEEECC---
Confidence 345566655 4666777 665 34654 78899999999 5554333 233323 35777766
Q ss_pred cccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 010940 421 VTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFV 487 (497)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~ 487 (497)
.+.+++.+||.++|+++ .++.+++.+++.+.+. ..+...=+++|++++
T Consensus 407 ------------~d~~~lA~aI~~aL~~~--~~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 407 ------------YDIDGMADAIARALTMP--LEEREERHRAMMDKLR-----KNDVQRWREDFLSDL 454 (456)
T ss_pred ------------CCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHh
Confidence 56899999999999852 1345555555666544 345566677777665
No 151
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.12 E-value=2.7 Score=34.39 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=34.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNT 49 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (497)
||++.+.++-.|.....-++..|.++|++|.++....-.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~ 39 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPP 39 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 589999999999999999999999999999998755433
No 152
>PHA01630 putative group 1 glycosyl transferase
Probab=89.96 E-value=2.6 Score=41.66 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=27.7
Q ss_pred cccchHH---hhhcCCccccccC-CC-chhHHHHHhhCCceeeccc
Q 010940 354 GWAPQVL---LLSHRAIGGFLTH-CG-WNSTLEGVSAGVPLVTCPL 394 (497)
Q Consensus 354 ~~~pq~~---lL~~~~~~~~I~H-gG-~gt~~eal~~GvP~v~iP~ 394 (497)
.++|+.+ ++..+++-++-++ .| -.++.||+++|+|+|+.-.
T Consensus 196 ~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~ 241 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEK 241 (331)
T ss_pred ccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCC
Confidence 3466544 5777887322233 22 4589999999999999754
No 153
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=87.20 E-value=8.8 Score=36.19 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchh
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (497)
++||||++-=-+. |---+.+|+++|++.| +|++++|...+...
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 46 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGM 46 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCC
Confidence 4678888654333 2245778999999888 79999988766543
No 154
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=86.87 E-value=4.2 Score=45.28 Aligned_cols=109 Identities=16% Similarity=0.084 Sum_probs=68.7
Q ss_pred ccchH---HhhhcCCccccccC---CCch-hHHHHHhhCCc---eeeccccccccchHHHHHHHHc-ceEEecccccccc
Q 010940 355 WAPQV---LLLSHRAIGGFLTH---CGWN-STLEGVSAGVP---LVTCPLFAEQFYNEKLAVQVLG-IGVSVGIEAAVTW 423 (497)
Q Consensus 355 ~~pq~---~lL~~~~~~~~I~H---gG~g-t~~eal~~GvP---~v~iP~~~DQ~~na~~~~~~~G-~G~~l~~~~~~~~ 423 (497)
++|+. .++..+++ ||.- -|+| +..|++++|+| ++++.- -...+.. +| -|+.+++
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe---~~G~~~~----l~~~allVnP------ 427 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSE---FAGAGQS----LGAGALLVNP------ 427 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeC---CcCchhh----hcCCeEEECC------
Confidence 45543 46777887 6644 4776 67799999999 444442 2223221 44 5788877
Q ss_pred ccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhccC
Q 010940 424 GLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFVIQQTRGQ 494 (497)
Q Consensus 424 ~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~~~~~~~~ 494 (497)
.+.+++.+||.++|+.+ .+..+++.+++.+... ..+...-++.|++.+..+...|
T Consensus 428 ---------~D~~~lA~AI~~aL~m~--~~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~~~~~ 482 (797)
T PLN03063 428 ---------WNITEVSSAIKEALNMS--DEERETRHRHNFQYVK-----THSAQKWADDFMSELNDIIVEA 482 (797)
T ss_pred ---------CCHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHHhhhh
Confidence 56899999999999831 1334444555555544 3455566778888776665433
No 155
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=86.70 E-value=2.3 Score=40.59 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNT 49 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (497)
+...|.|+-+|+.|--.-.=.|...|.++||+|-+++-.+..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 456889999999999999999999999999999999866543
No 156
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=86.13 E-value=3.1 Score=43.21 Aligned_cols=106 Identities=19% Similarity=0.159 Sum_probs=60.3
Q ss_pred EeccccchHH---hhhcCCcccccc---CCCch-hHHHHHhhCCc---eeeccccccccchHHHHHHHHcceEEeccccc
Q 010940 351 IIRGWAPQVL---LLSHRAIGGFLT---HCGWN-STLEGVSAGVP---LVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAA 420 (497)
Q Consensus 351 ~v~~~~pq~~---lL~~~~~~~~I~---HgG~g-t~~eal~~GvP---~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~ 420 (497)
++.+++++.+ ++..+++ ||. +-|+| ++.||+++|+| +|++- |....+ +...-|+.+++
T Consensus 344 ~~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S---~~~G~~----~~~~~g~lv~p--- 411 (460)
T cd03788 344 YLYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILS---EFAGAA----EELSGALLVNP--- 411 (460)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEe---ccccch----hhcCCCEEECC---
Confidence 3456777655 5777777 653 34654 67999999999 44442 211111 11233666665
Q ss_pred cccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHH
Q 010940 421 VTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFV 487 (497)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~ 487 (497)
.+.+++.++|.++++++. +..+++.++.++.+. ..+...-+.+++.++
T Consensus 412 ------------~d~~~la~ai~~~l~~~~--~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ------------YDIDEVADAIHRALTMPL--EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ------------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 468999999999998621 122223333333332 344555556666543
No 157
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=85.86 E-value=3.9 Score=35.40 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=62.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
..|+|+++-.|+.|-..-.+.|++.|.+.|+.|-=+.++...+--.+. ||+.+.+...... -+.....
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~---------GF~Ivdl~tg~~~-~la~~~~-- 71 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRI---------GFKIVDLATGEEG-ILARVGF-- 71 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEe---------eeEEEEccCCceE-EEEEcCC--
Confidence 478999999999999999999999999999998766666444322222 6666666322111 1111101
Q ss_pred CCCCChhHHHHHHHHHH-HhhHHHHHHHhhcCCCCcEEEeCCC
Q 010940 88 DKLPSRDLIKNFFHAAS-MLKQPFEQLFDKLHPRPSCIISGKN 129 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~pDlvI~D~~ 129 (497)
.. +-..-+......++ -....++..++ ..|+||.|-.
T Consensus 72 ~~-~rvGkY~V~v~~le~i~~~al~rA~~----~aDvIIIDEI 109 (179)
T COG1618 72 SR-PRVGKYGVNVEGLEEIAIPALRRALE----EADVIIIDEI 109 (179)
T ss_pred CC-cccceEEeeHHHHHHHhHHHHHHHhh----cCCEEEEecc
Confidence 10 00111112223332 34455666655 4699999974
No 158
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=85.44 E-value=6.8 Score=37.03 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=24.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
|+|+++ ++.|. -..|++.|.++||+|+..+....
T Consensus 1 m~ILvl--GGT~e---gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 1 MTVLLM--GGTVD---SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred CeEEEE--echHH---HHHHHHHHHhCCCeEEEEEccCC
Confidence 356664 33332 67899999999999998876643
No 159
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=84.48 E-value=36 Score=32.00 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=55.1
Q ss_pred EEEEeeCCCcC--CCHHhHHH----HHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEe-----ccccc
Q 010940 289 VIYACLGSICG--LATWQLLE----LGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFII-----RGWAP 357 (497)
Q Consensus 289 ~V~vs~GS~~~--~~~~~~~~----~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v-----~~~~p 357 (497)
+.++-.|+... .+.+.... +.+.+++.|..|+.+........ +-..+++.....-+.+ .++=|
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~------~~s~l~~~l~s~~~i~w~~~d~g~NP 237 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDT------VKSILKNNLNSSPGIVWNNEDTGYNP 237 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHH------HHHHHHhccccCceeEeCCCCCCCCc
Confidence 43344454444 33444333 44556778888888776442211 1011222112111211 14558
Q ss_pred hHHhhhcCCccccccCCCchhHHHHHhhCCceeec
Q 010940 358 QVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTC 392 (497)
Q Consensus 358 q~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~i 392 (497)
+.+.|+.++. .++|--..+-.+||.+.|+|+.++
T Consensus 238 Y~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 238 YIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred hHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 9999988886 455666678899999999998775
No 160
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=83.52 E-value=2.5 Score=39.43 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=60.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKL 90 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~ 90 (497)
||+++-=-+ =|---+..|+++|+ .+++|+++.|...+.-+-....... .++...+.. ......+
T Consensus 2 rILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~----Plr~~~~~~---------~~~av~G- 65 (252)
T COG0496 2 RILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHE----PLRVRQVDN---------GAYAVNG- 65 (252)
T ss_pred eEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccccccc----CceeeEecc---------ceEEecC-
Confidence 555533222 24444667888888 9999999999977664432211100 122222210 0000000
Q ss_pred CChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCC----------CcchHH---HHHHcCCCeEEEccc
Q 010940 91 PSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKN----------LPWTVN---SAIKFKIPTILFDGM 150 (497)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~----------~~~~~~---~A~~lgiP~v~~~~~ 150 (497)
.-.+-..-.+..++++. .||+||+... +++... =|..+|||.+.+|..
T Consensus 66 ----------TPaDCV~lal~~l~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 66 ----------TPADCVILGLNELLKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ----------ChHHHHHHHHHHhccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 01122334477788776 7999997542 222222 366789999997765
No 161
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=83.35 E-value=14 Score=34.75 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcch
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTR 51 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (497)
||||++-=-+. |---+.+|+++|++ +|+|++++|...+.-
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg 40 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSA 40 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 36666544333 22337888999975 689999999876653
No 162
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=81.31 E-value=47 Score=34.16 Aligned_cols=79 Identities=8% Similarity=-0.010 Sum_probs=56.2
Q ss_pred CCeE-eccccc-h-HHhhhcCCccccccCCC--chhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccc
Q 010940 348 RGFI-IRGWAP-Q-VLLLSHRAIGGFLTHCG--WNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVT 422 (497)
Q Consensus 348 ~nv~-v~~~~p-q-~~lL~~~~~~~~I~HgG--~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~ 422 (497)
+|++ ..++.+ + ..++..+++-+-|+||. ..++.||+.+|+|++..=.. ..+...+ .. |-....
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t---~~~~~~i-~~---g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEET---AHNRDFI-AS---ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecc---cCCcccc-cC---CceecC-----
Confidence 5544 556677 3 55999999999999987 47999999999999986322 2222223 21 443433
Q ss_pred cccccccccccCHHHHHHHHHHHHcC
Q 010940 423 WGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+.+++.++|.++|+|
T Consensus 396 ----------~~~~~m~~~i~~lL~d 411 (438)
T TIGR02919 396 ----------NEVDQLISKLKDLLND 411 (438)
T ss_pred ----------CCHHHHHHHHHHHhcC
Confidence 3578899999999998
No 163
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=81.16 E-value=7 Score=36.71 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=28.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchh
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (497)
||||++-=-+. |.--+.+|+++|++. |+|++++|...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~ 41 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGA 41 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCC
Confidence 35666543332 334578899999998 799999998766543
No 164
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=80.86 E-value=3.7 Score=33.51 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=37.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhh
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNI 54 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (497)
+|+++.+.+..-|-.-+..||..|.++||+|.++......+.+..
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~ 45 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVE 45 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHH
Confidence 479999999999999999999999999999999976654444443
No 165
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=80.74 E-value=2.7 Score=34.56 Aligned_cols=38 Identities=5% Similarity=-0.110 Sum_probs=27.3
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 10 LHFVLIPLMSPG---HLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 10 ~~il~~~~p~~G---Hi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
|||+|+.-|-.+ .-.-.++|+.+..+|||+|.++.+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 478888777655 45678999999999999999998774
No 166
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.68 E-value=15 Score=33.24 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=38.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhh
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNI 54 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (497)
+.+|++.+.++-.|-....-++..|.++|++|+++...--.+.+..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~ 127 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVE 127 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 6799999999999999999999999999999999886544443333
No 167
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=80.03 E-value=14 Score=31.32 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTT 50 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (497)
++++||++.+.+.-||=.-.--+++.|++.|.+|.....-..-+
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~ 53 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPE 53 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHH
Confidence 36899999999999999999999999999999999977554433
No 168
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=79.37 E-value=1.7 Score=36.24 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=36.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
+||++...++.+=+. ...+.++|+++|++|.++.++.-.+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 588888888877777 999999999999999999988666555544
No 169
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=79.29 E-value=24 Score=33.18 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=27.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchh
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (497)
||||++-=-+. |---+.+|+++|++ +|+|++++|...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~ 41 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSAT 41 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 36666544333 33447788888865 6899999998766533
No 170
>PRK12342 hypothetical protein; Provisional
Probab=76.72 E-value=15 Score=34.59 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=28.4
Q ss_pred HHHHHhhcCCCCcEEEeCCCC-cc-----hHHHHHHcCCCeEEEccc
Q 010940 110 FEQLFDKLHPRPSCIISGKNL-PW-----TVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 110 l~~ll~~~~~~pDlvI~D~~~-~~-----~~~~A~~lgiP~v~~~~~ 150 (497)
|.+.++.. +||+|++...+ .. +..+|+.||+|++++...
T Consensus 101 La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 101 LAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 44455555 79999987644 22 677999999999987654
No 171
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=76.13 E-value=4.4 Score=36.49 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=34.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNT 49 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (497)
++.+||++--.|+.|=+.-.+.++++|.++||+|.++.++.-.
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 3466888877776665555799999999999999999988543
No 172
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=76.08 E-value=69 Score=33.45 Aligned_cols=110 Identities=17% Similarity=0.080 Sum_probs=70.0
Q ss_pred eEeccccchHH---hhhcCCcccccc--CCCchhH-HHHHhhCC----ceeeccccccccchHHHHHHHHcceEEecccc
Q 010940 350 FIIRGWAPQVL---LLSHRAIGGFLT--HCGWNST-LEGVSAGV----PLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 350 v~v~~~~pq~~---lL~~~~~~~~I~--HgG~gt~-~eal~~Gv----P~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
+++.+.+|+.. ++..+++ ++|| .-|+|-+ .|.++++. |+|+==+. .-| +.+.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa----Gaa----~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA----GAA----VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc----cch----hhcCCCEEECC--
Confidence 56667888766 5556777 3444 4588854 59999977 44433221 122 22556788887
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhh
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFVIQQ 490 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~~~~ 490 (497)
.+.+++.+||.+.|+.+. ++-+++.+++.+.++ ..+...=.+.|++.+.++
T Consensus 433 -------------~d~~~~A~ai~~AL~m~~--~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 -------------YDPVRMDETIYVALAMPK--AEQQARMREMFDAVN-----YYDVQRWADEFLAAVSPQ 483 (487)
T ss_pred -------------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhhc
Confidence 679999999999998621 344556666666555 334555677788776543
No 173
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=76.07 E-value=8.4 Score=42.58 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=70.7
Q ss_pred eEeccccchHH---hhhcCCccccccC---CCch-hHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccc
Q 010940 350 FIIRGWAPQVL---LLSHRAIGGFLTH---CGWN-STLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVT 422 (497)
Q Consensus 350 v~v~~~~pq~~---lL~~~~~~~~I~H---gG~g-t~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~ 422 (497)
+++.+++++.+ ++..+++ |+.- -|+| ++.||+++|+|-..+|...+--.-+.. +.-|+.+++
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~----l~~~llv~P----- 412 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAE----LAEALLVNP----- 412 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHH----hCcCeEECC-----
Confidence 34557788765 5666777 5543 3554 789999998863333333332222222 333777776
Q ss_pred cccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhcc
Q 010940 423 WGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFVIQQTRG 493 (497)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~~~~~~~ 493 (497)
.+.+++.++|.++++++. ++.+++.+++.+.+. ..+...-+++|++.+..+...
T Consensus 413 ----------~d~~~la~ai~~~l~~~~--~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 413 ----------NDIEGIAAAIKRALEMPE--EEQRERMQAMQERLR-----RYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred ----------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHhh
Confidence 568999999999998521 233444444444433 456667778888888776544
No 174
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=76.03 E-value=10 Score=33.99 Aligned_cols=100 Identities=16% Similarity=0.270 Sum_probs=49.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCc-chhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNT-TRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
.++.+-..+.|-+.-...|+++|+++ |++|.+-++...- +.+.+... ..+....+|.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLD------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---S-------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCcc-------------
Confidence 56777778899999999999999997 8998887754333 22322211 12333334421
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcch--HHHHHHcCCCeEEEcc
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWT--VNSAIKFKIPTILFDG 149 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~--~~~A~~lgiP~v~~~~ 149 (497)
. ...++.+++.+ +||++|.-..-.|. ...|++.|||++.+..
T Consensus 83 -------~-----------~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 -------F-----------PWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -------S-----------HHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -------C-----------HHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 0 12234556666 99998755433343 3358888999998654
No 175
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=76.01 E-value=61 Score=32.43 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=37.3
Q ss_pred cccCCCchhHHHHHhhCCceee--cccccccc------chHHHHHHHHcceEEeccccccccccccccccccCHHHHHHH
Q 010940 370 FLTHCGWNSTLEGVSAGVPLVT--CPLFAEQF------YNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEA 441 (497)
Q Consensus 370 ~I~HgG~gt~~eal~~GvP~v~--iP~~~DQ~------~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 441 (497)
+-|+ |+.++..|+.+|.|+-. ++.++|-. .|+-++++.+--.+. ..+.+++..|
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv-----------------vV~~~ei~aa 309 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV-----------------VVEDDEIAAA 309 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE-----------------EeccHHHHHH
Confidence 4444 67889999999988532 22344432 233333232222222 2678899999
Q ss_pred HHHHHcC
Q 010940 442 IEKLMDR 448 (497)
Q Consensus 442 i~~vl~~ 448 (497)
|.++++|
T Consensus 310 I~~l~ed 316 (457)
T KOG1250|consen 310 ILRLFED 316 (457)
T ss_pred HHHHHHh
Confidence 9999987
No 176
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=75.59 E-value=21 Score=33.46 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=27.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
|||++-=-+ =|---+.+|+++|++.| +|+++.|...+...-
T Consensus 2 ~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g 42 (244)
T TIGR00087 2 KILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSGTG 42 (244)
T ss_pred eEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccccc
Confidence 566543322 13345678999999988 899999987665443
No 177
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=75.50 E-value=20 Score=32.34 Aligned_cols=48 Identities=13% Similarity=-0.073 Sum_probs=40.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
.+.+|++.+.++--|-....-++..|..+|++|++++..--.+.+...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 457999999999999999999999999999999999877555444443
No 178
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.90 E-value=44 Score=32.78 Aligned_cols=41 Identities=27% Similarity=0.195 Sum_probs=35.1
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Q 010940 10 LHFVLIPL-MSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTT 50 (497)
Q Consensus 10 ~~il~~~~-p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (497)
.||++++. |+.|=..-..++|-.|++.|++|.++++++-+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 47888877 899999999999999999999988888776554
No 179
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=74.71 E-value=78 Score=29.96 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=51.3
Q ss_pred CCCeEeccccc---hHHhhhcCCccccccC---CCchh-HHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccc
Q 010940 347 GRGFIIRGWAP---QVLLLSHRAIGGFLTH---CGWNS-TLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 347 ~~nv~v~~~~p---q~~lL~~~~~~~~I~H---gG~gt-~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
..++...++++ ...++..+++ ++.. .|.|. +.||+++|+|+|.-. .......+ ...+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceE-ecCC-
Confidence 47788888888 2335666666 5555 35544 599999999996654 33333333 3222365 3221
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcC
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+.+++..++..++++
T Consensus 327 -------------~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 327 -------------GDVEELADALEQLLED 342 (381)
T ss_pred -------------CCHHHHHHHHHHHhcC
Confidence 2478999999999987
No 180
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=73.98 E-value=5.5 Score=35.96 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=31.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchh
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (497)
||||++-=-+. +---+..|+++|++.||+|++++|...+...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 47777766555 5566889999998889999999999776543
No 181
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=73.51 E-value=8.2 Score=40.67 Aligned_cols=92 Identities=12% Similarity=0.153 Sum_probs=59.2
Q ss_pred CCeEeccccc--h-HHhhhcCCccccccCC---CchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 348 RGFIIRGWAP--Q-VLLLSHRAIGGFLTHC---GWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 348 ~nv~v~~~~p--q-~~lL~~~~~~~~I~Hg---G~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
..|.+.++.. + ..++.++.+ +|.=+ |.++..||+.+|+|+| .......| +...=|.-+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 4677878777 3 347777776 77665 6779999999999999 22233333 323334333 1
Q ss_pred ccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 010940 422 TWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIA 466 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~ 466 (497)
+..+|.+||..+|+|.+.-+.+...|-+.++..
T Consensus 474 ------------d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 474 ------------DISELLKALDYYLDNLKNWNYSLAYSIKLIDDY 506 (519)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 467899999999998433344444444444443
No 182
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=73.49 E-value=32 Score=30.51 Aligned_cols=106 Identities=14% Similarity=0.072 Sum_probs=55.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCe--EEEEe-CCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIK--VTIVT-TPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCEN 86 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~--Vt~~~-~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~ 86 (497)
|||+|+.+++. ..+..+.++|.+++|+ |..+. .+.......... ..++....+... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~------~~~~~~~~~~~~----~------- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAI------KNGIPAQVADEK----N------- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHH------HTTHHEEEHHGG----G-------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccccc------cCCCCEEecccc----C-------
Confidence 58988866665 5566778899999998 44444 333222111111 113333333210 0
Q ss_pred CCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC-cchHHHHHHcCCCeEEEccc
Q 010940 87 MDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL-PWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 150 (497)
+.........+.+.+++. +||++|+-.+. .....+-...+..++.+.++
T Consensus 61 -------------~~~~~~~~~~~~~~l~~~--~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 -------------FQPRSENDEELLELLESL--NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -------------SSSHHHHHHHHHHHHHHT--T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -------------CCchHhhhhHHHHHHHhh--ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 011122344567777888 99999877643 33344556666666665544
No 183
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=72.33 E-value=40 Score=33.13 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=61.3
Q ss_pred CCeE-eccccc---hHHhhhcCCccccccC--CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 348 RGFI-IRGWAP---QVLLLSHRAIGGFLTH--CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 348 ~nv~-v~~~~p---q~~lL~~~~~~~~I~H--gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
.|+. ..+++| +..+|..++++.|.+. =|.|+++-.+..|+|+++- .+-+.+-... + .|+=+.-..++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~-~-~~ipVlf~~d~-- 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK-E-QGIPVLFYGDE-- 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH-h-CCCeEEecccc--
Confidence 5675 457887 4568999999777764 5899999999999999986 4555554444 5 67766655454
Q ss_pred ccccccccccccCHHHHHHHHHHHHc
Q 010940 422 TWGLEDKSGLVIKREKVKEAIEKLMD 447 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~ai~~vl~ 447 (497)
++...|++|=+++..
T Consensus 318 -----------L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 -----------LDEALVREAQRQLAN 332 (360)
T ss_pred -----------CCHHHHHHHHHHHhh
Confidence 999999998887754
No 184
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=71.77 E-value=31 Score=35.54 Aligned_cols=37 Identities=16% Similarity=0.057 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEcc
Q 010940 108 QPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDG 149 (497)
Q Consensus 108 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~ 149 (497)
..+++.++.. +||++|.... ...+|+++|||++.+..
T Consensus 367 ~e~~~~i~~~--~pDliiG~s~---~~~~a~~~gip~v~~~~ 403 (435)
T cd01974 367 WHLRSLLFTE--PVDLLIGNTY---GKYIARDTDIPLVRFGF 403 (435)
T ss_pred HHHHHHHhhc--CCCEEEECcc---HHHHHHHhCCCEEEeeC
Confidence 3455666666 9999999863 57789999999987553
No 185
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=71.36 E-value=1e+02 Score=29.99 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=58.3
Q ss_pred CCeE-eccccc---hHHhhhcCCccccccC--CCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccc
Q 010940 348 RGFI-IRGWAP---QVLLLSHRAIGGFLTH--CGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAV 421 (497)
Q Consensus 348 ~nv~-v~~~~p---q~~lL~~~~~~~~I~H--gG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~ 421 (497)
+++. ..+++| +..+|+.++++.|+|+ =|.||++-.+..|+|+++- .+-+.|.... + .|+=+-.+.+.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~-e-~gv~Vlf~~d~-- 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT-E-QGLPVLFTGDD-- 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH-h-CCCeEEecCCc--
Confidence 5655 446676 5669999999888876 4899999999999999986 4555665544 5 77777555554
Q ss_pred ccccccccccccCHHHHHHHHHHH
Q 010940 422 TWGLEDKSGLVIKREKVKEAIEKL 445 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~ai~~v 445 (497)
++...+.++=+++
T Consensus 279 -----------L~~~~v~e~~rql 291 (322)
T PRK02797 279 -----------LDEDIVREAQRQL 291 (322)
T ss_pred -----------ccHHHHHHHHHHH
Confidence 7888777764444
No 186
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=70.92 E-value=50 Score=27.05 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=35.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTT 50 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (497)
||++.+.++-.|-.-..-++.-|+.+|++|.++.+.--.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e 40 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPE 40 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 5899999999999999999999999999999998754333
No 187
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=69.31 E-value=6.6 Score=34.74 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=24.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|||+++ ++.|++- -.|+++...|||+||.++-.
T Consensus 1 mKIaiI--gAsG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAII--GASGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEE--ecCchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 467664 4445543 36789999999999999854
No 188
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=69.13 E-value=4.4 Score=36.22 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCccCHHH------------HHHHHHHHHHCCCeEEEEeCC
Q 010940 9 QLHFVLIPLMSPGHLIP------------MIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P------------~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
.+||+++..|+.=.+.| -..||+++..|||+|+++..+
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 46788887777666655 468999999999999999987
No 189
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=68.87 E-value=27 Score=26.82 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=45.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 010940 26 MIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNFFHAASM 105 (497)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (497)
++.+++.|.+.|++|. +++.....++.. |+.+..+- . ....+
T Consensus 2 ~~~~~~~l~~lG~~i~--AT~gTa~~L~~~---------Gi~~~~~~-~----ki~~~---------------------- 43 (90)
T smart00851 2 LVELAKRLAELGFELV--ATGGTAKFLREA---------GLPVKTLH-P----KVHGG---------------------- 43 (90)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHHC---------CCcceecc-C----CCCCC----------------------
Confidence 4689999999999983 444444444433 55542110 0 00000
Q ss_pred hhHHHHHHHhhcCCCCcEEEeCCC--C-------cchHHHHHHcCCCeE
Q 010940 106 LKQPFEQLFDKLHPRPSCIISGKN--L-------PWTVNSAIKFKIPTI 145 (497)
Q Consensus 106 ~~~~l~~ll~~~~~~pDlvI~D~~--~-------~~~~~~A~~lgiP~v 145 (497)
...+.+++++. ++|+||.... . ......|...+||++
T Consensus 44 -~~~i~~~i~~g--~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 44 -ILAILDLIKNG--EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred -CHHHHHHhcCC--CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 01256677776 9999997542 1 122335888899976
No 190
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=68.36 E-value=14 Score=27.86 Aligned_cols=36 Identities=25% Similarity=0.144 Sum_probs=32.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
+.-++++..+...|....-.+|+.|.++|+.|...=
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 478899999999999999999999999999988653
No 191
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=68.31 E-value=32 Score=32.51 Aligned_cols=40 Identities=15% Similarity=0.040 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCCCcEEEeCCCC------cchHHHHHHcCCCeEEEccc
Q 010940 109 PFEQLFDKLHPRPSCIISGKNL------PWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 109 ~l~~ll~~~~~~pDlvI~D~~~------~~~~~~A~~lgiP~v~~~~~ 150 (497)
.|.+.+++. .||+||+...+ --+..+|+.||+|++++...
T Consensus 103 ~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 344455555 79999976643 24566899999999987654
No 192
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.17 E-value=20 Score=34.39 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=50.9
Q ss_pred ccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccc--hHHHHHHHHcceEEeccccccccccccccccc
Q 010940 355 WAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFY--NEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLV 432 (497)
Q Consensus 355 ~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~--na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~ 432 (497)
|-...++|.++++ .|.-.|- .+-+++--|||+|.+|-.+-|+. .|.+=..-+|+.+.+-...
T Consensus 302 qqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~------------- 365 (412)
T COG4370 302 QQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE------------- 365 (412)
T ss_pred HHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc-------------
Confidence 3334445555555 4444332 23346778999999999998854 5555445578887775432
Q ss_pred cCHHHHHHHHHHHHcCCchhHHHHHHHH
Q 010940 433 IKREKVKEAIEKLMDRGKQGEKRRKRAR 460 (497)
Q Consensus 433 ~~~~~l~~ai~~vl~~~~~~~~~~~~a~ 460 (497)
+..-..+.++++.| +.+.++++
T Consensus 366 --aq~a~~~~q~ll~d----p~r~~air 387 (412)
T COG4370 366 --AQAAAQAVQELLGD----PQRLTAIR 387 (412)
T ss_pred --hhhHHHHHHHHhcC----hHHHHHHH
Confidence 33334445559998 66555555
No 193
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=66.65 E-value=50 Score=28.32 Aligned_cols=139 Identities=13% Similarity=0.144 Sum_probs=70.4
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCcc
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIG 368 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~ 368 (497)
.|-|-+||.. +....+++...|+.++..+-+.+-+-++ .|+.+. +++.. +.+-.++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR--------~p~~l~-----------~~~~~---~~~~~~~ 57 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR--------TPERLL-----------EFVKE---YEARGAD 57 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT--------SHHHHH-----------HHHHH---TTTTTES
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC--------CHHHHH-----------HHHHH---hccCCCE
Confidence 4556667665 6677888889999998766665555444 343322 11111 1111223
Q ss_pred ccccCCCch----hHHHHHhhCCceeeccccccccch----HHHHHHHHcceEEeccccccccccccccccccCHHHHHH
Q 010940 369 GFLTHCGWN----STLEGVSAGVPLVTCPLFAEQFYN----EKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKE 440 (497)
Q Consensus 369 ~~I~HgG~g----t~~eal~~GvP~v~iP~~~DQ~~n----a~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (497)
+||.=.|.. ++.-++. -.|+|.+|....+..- ...+.--.|+++..-.-. + ..+..-+..
T Consensus 58 viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~-------~----~~nAA~~A~ 125 (150)
T PF00731_consen 58 VIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGIN-------N----GFNAALLAA 125 (150)
T ss_dssp EEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SST-------H----HHHHHHHHH
T ss_pred EEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEcc-------C----chHHHHHHH
Confidence 477777753 4443333 7999999987664421 222211125554332100 0 033444444
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHH
Q 010940 441 AIEKLMDRGKQGEKRRKRARQLGEIANR 468 (497)
Q Consensus 441 ai~~vl~~~~~~~~~~~~a~~~~~~~~~ 468 (497)
.|-. +.| ++++++.+.+++.+++
T Consensus 126 ~ILa-~~d----~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 126 RILA-LKD----PELREKLRAYREKMKE 148 (150)
T ss_dssp HHHH-TT-----HHHHHHHHHHHHHHHH
T ss_pred HHHh-cCC----HHHHHHHHHHHHHHHc
Confidence 3332 234 8888888888888764
No 194
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=66.51 E-value=33 Score=27.68 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHHHH
Q 010940 22 HLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNFFH 101 (497)
Q Consensus 22 Hi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (497)
+-.-++.+|+.|.+.||++ ++++.....++.. |+.+..+.- ...+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~---------Gi~~~~v~~------~~~~------------------ 54 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA---------GIPVRAVSK------RHED------------------ 54 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc---------CCceEEEEe------cCCC------------------
Confidence 5566889999999999998 3555555555433 677666531 1110
Q ss_pred HHHHhhHHHHHHHhh-cCCCCcEEEeCC--CC-----cch---HHHHHHcCCCeEE
Q 010940 102 AASMLKQPFEQLFDK-LHPRPSCIISGK--NL-----PWT---VNSAIKFKIPTIL 146 (497)
Q Consensus 102 ~~~~~~~~l~~ll~~-~~~~pDlvI~D~--~~-----~~~---~~~A~~lgiP~v~ 146 (497)
-...+.+++++ . ++|+||.-. .. .-+ ...|...|||+++
T Consensus 55 ----g~~~i~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 55 ----GEPTVDAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred ----CCcHHHHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 12335555666 6 999999733 21 112 3358889999987
No 195
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=66.38 E-value=50 Score=33.74 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=25.4
Q ss_pred HHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEcc
Q 010940 112 QLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDG 149 (497)
Q Consensus 112 ~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~ 149 (497)
..+++. +||++|... .+..+|+++|||.+.+..
T Consensus 344 ~~~~~~--~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 344 AAVEEY--RPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred HHHhhc--CCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 334455 999999884 466799999999988553
No 196
>PRK05973 replicative DNA helicase; Provisional
Probab=65.90 E-value=28 Score=32.49 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=37.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
=+++...|+.|=..-.+.++...+++|+.|.|++.+...+.+...
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 357777789999999999999998999999999988776544433
No 197
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=64.99 E-value=42 Score=31.23 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=24.6
Q ss_pred CCCcEEE-eCCCC-cchHHHHHHcCCCeEEEccchH
Q 010940 119 PRPSCII-SGKNL-PWTVNSAIKFKIPTILFDGMGC 152 (497)
Q Consensus 119 ~~pDlvI-~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 152 (497)
.-||++| .|+.. --+..=|.++|||+|.++-+.+
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3499986 56643 3445559999999999887744
No 198
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=64.67 E-value=9.2 Score=37.36 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 5 LPAHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 5 ~~~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
|++.+|||+++-.++.| ..+|..|.++||+|+++.-..
T Consensus 1 ~~~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 34567899999888877 457888999999999998653
No 199
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=64.22 E-value=57 Score=26.79 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=17.4
Q ss_pred HHHhhHHHHHHHhhcCCCCcEEEeCCC
Q 010940 103 ASMLKQPFEQLFDKLHPRPSCIISGKN 129 (497)
Q Consensus 103 ~~~~~~~l~~ll~~~~~~pDlvI~D~~ 129 (497)
...+...+.+++++. +||+|++-..
T Consensus 85 ~~~~~~~l~~~i~~~--~p~~V~t~~~ 109 (128)
T PF02585_consen 85 WEELVRDLEDLIREF--RPDVVFTPDP 109 (128)
T ss_dssp HHHHHHHHHHHHHHH---ESEEEEE-S
T ss_pred HHHHHHHHHHHHHHc--CCCEEEECCC
Confidence 345566788888888 9999997653
No 200
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=63.45 E-value=23 Score=33.37 Aligned_cols=40 Identities=13% Similarity=0.383 Sum_probs=27.4
Q ss_pred hHHHHHHHhhcCCCCcEEEeCCCCcch-------HHHHHHcCCCeEEEcc
Q 010940 107 KQPFEQLFDKLHPRPSCIISGKNLPWT-------VNSAIKFKIPTILFDG 149 (497)
Q Consensus 107 ~~~l~~ll~~~~~~pDlvI~D~~~~~~-------~~~A~~lgiP~v~~~~ 149 (497)
...+.+++++. ++|+|| |...+++ ..+|+++|||++.+--
T Consensus 55 ~~~l~~~l~~~--~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 55 EEGLAEFLREN--GIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred HHHHHHHHHhC--CCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 34566777777 999988 3323333 4468899999998654
No 201
>PHA02542 41 41 helicase; Provisional
Probab=62.78 E-value=60 Score=33.79 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=35.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
+++..-|+.|=..-.+.+|...++.|+.|.|++-+...+.+.
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~ 234 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIA 234 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHH
Confidence 456677999999999999999988999999999887666443
No 202
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=62.53 E-value=1.1e+02 Score=29.83 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCcc-----CHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCC
Q 010940 9 QLHFVLIPLMSPG-----HLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQG 83 (497)
Q Consensus 9 ~~~il~~~~p~~G-----Hi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~ 83 (497)
+.-|++.|..+.| ...-+..|++.|.++|++|.+++.+...+..+..... .+ ..
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~------------~~---------~~ 232 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL------------LP---------GE 232 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh------------CC---------cc
Confidence 3446665544333 2446889999999889999998887655544433110 00 00
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 84 CENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
...... .....++..+++ +-|++|+.. ++...+|..+|+|++.++..
T Consensus 233 ~~~l~g--------------~~sL~el~ali~----~a~l~I~~D--SGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 233 LRNLAG--------------ETSLDEAVDLIA----LAKAVVTND--SGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred cccCCC--------------CCCHHHHHHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 000000 011233445555 569999775 57788999999999987654
No 203
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=62.52 E-value=57 Score=29.53 Aligned_cols=86 Identities=9% Similarity=0.089 Sum_probs=46.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHG--IKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rG--H~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
+||+++.++..+-+. +|.+.+.+.+ ++|.++.+......+... ....|+.+..++.. .+
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~-----a~~~gIp~~~~~~~----~~------- 62 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLER-----AEAAGIPTFVLDHK----DF------- 62 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHH-----HHHcCCCEEEECcc----cc-------
Confidence 589999887755444 5556676654 778776544321111111 22337777766411 00
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCC
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKN 129 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~ 129 (497)
.........+.+.+++. +||++|+-.+
T Consensus 63 -------------~~~~~~~~~~~~~l~~~--~~D~iv~~~~ 89 (200)
T PRK05647 63 -------------PSREAFDAALVEALDAY--QPDLVVLAGF 89 (200)
T ss_pred -------------CchhHhHHHHHHHHHHh--CcCEEEhHHh
Confidence 00112233455666777 9999987553
No 204
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=62.10 E-value=21 Score=33.85 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHC---CCeEEEEeCCCCcchh
Q 010940 25 PMIDMARLLAEH---GIKVTIVTTPLNTTRF 52 (497)
Q Consensus 25 P~l~LA~~L~~r---GH~Vt~~~~~~~~~~~ 52 (497)
-+.+|+++|.+. |++|++++|...+.-.
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ 45 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQSGV 45 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCCCC
Confidence 355677777763 4799999998766543
No 205
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=61.90 E-value=28 Score=36.90 Aligned_cols=80 Identities=9% Similarity=0.014 Sum_probs=45.8
Q ss_pred chHHhhhcCCcccccc---CCCch-hHHHHHhhCCceeeccccccccchHHHHHHHH-cceEEecccccccccccccccc
Q 010940 357 PQVLLLSHRAIGGFLT---HCGWN-STLEGVSAGVPLVTCPLFAEQFYNEKLAVQVL-GIGVSVGIEAAVTWGLEDKSGL 431 (497)
Q Consensus 357 pq~~lL~~~~~~~~I~---HgG~g-t~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~-G~G~~l~~~~~~~~~~~~~~~~ 431 (497)
+..+++..+++ +|. +=|+| ++.||+++|+|+|.....+=- .++..+...- ..|+.+...+.. ..
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~~~--------~~ 535 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRRFK--------SP 535 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCCcc--------ch
Confidence 35666766777 554 34544 899999999999997653210 1112221211 257777543200 00
Q ss_pred ccCHHHHHHHHHHHHc
Q 010940 432 VIKREKVKEAIEKLMD 447 (497)
Q Consensus 432 ~~~~~~l~~ai~~vl~ 447 (497)
.-+.+.|.++|.++++
T Consensus 536 ~e~v~~La~~m~~~~~ 551 (590)
T cd03793 536 DESVQQLTQYMYEFCQ 551 (590)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 1245678888888885
No 206
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=61.75 E-value=6 Score=30.94 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=46.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 010940 26 MIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNFFHAASM 105 (497)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (497)
++.+|+.|.+.||++ ++++.....++.. |+.+..+.... +.++ ... ..
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~---~~~~---~~~----g~----------- 49 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNKI---GEGE---SPD----GR----------- 49 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEEH---STG----GGT----HC-----------
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeeec---ccCc---cCC----ch-----------
Confidence 578999999999665 5555555555544 67754442000 0000 000 00
Q ss_pred hhHHHHHHHhhcCCCCcEEEeCCCCcc------h---HHHHHHcCCCeE
Q 010940 106 LKQPFEQLFDKLHPRPSCIISGKNLPW------T---VNSAIKFKIPTI 145 (497)
Q Consensus 106 ~~~~l~~ll~~~~~~pDlvI~D~~~~~------~---~~~A~~lgiP~v 145 (497)
..+.+++++. +.|+||....-.. + ..+|...+||++
T Consensus 50 --~~i~~~i~~~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 50 --VQIMDLIKNG--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp --HHHHHHHHTT--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred --hHHHHHHHcC--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 0667777877 9999997763211 1 335788899876
No 207
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=61.71 E-value=62 Score=33.14 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=25.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|+.++..+.. .+.+++.|.+-|-+|..+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 7777666555 888999999999999988666
No 208
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=61.58 E-value=91 Score=32.24 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=29.0
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 11 HFVLIPL-MSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 11 ~il~~~~-p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
+|+|... ...|=..-...|++.|+++|++|..+=+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 6777755 4578889999999999999999998855
No 209
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=60.94 E-value=32 Score=32.66 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=33.7
Q ss_pred CeEeccccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccc
Q 010940 349 GFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPL 394 (497)
Q Consensus 349 nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~ 394 (497)
.+.+.+-++-.++|.+++. +||-.+ .+-.||+.+|+|++++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 3445566777889999997 777754 477999999999999863
No 210
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=60.92 E-value=60 Score=30.29 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
.+++|+++..---==..-+-.....|+++||+|++++-.
T Consensus 9 ~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 9 DPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 467776554321111223344556678999999998733
No 211
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=60.76 E-value=54 Score=26.20 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=54.9
Q ss_pred cCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHHH
Q 010940 21 GHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNFF 100 (497)
Q Consensus 21 GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (497)
++-.-++.+++.|.+.|+++. +++.....++.. |+.+..+... .
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~-------~------------------ 53 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKV-------S------------------ 53 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeec-------C------------------
Confidence 466778999999999999983 455555544433 6776665311 0
Q ss_pred HHHHHhhHHHHHHHhhcCCCCcEEEeCCCC-------cchHHHHHHcCCCeEE
Q 010940 101 HAASMLKQPFEQLFDKLHPRPSCIISGKNL-------PWTVNSAIKFKIPTIL 146 (497)
Q Consensus 101 ~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-------~~~~~~A~~lgiP~v~ 146 (497)
.-...+.+++++. ++|+||.-... +.....|-..|||+++
T Consensus 54 ----~~~~~i~~~i~~~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 54 ----EGRPNIVDLIKNG--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred ----CCchhHHHHHHcC--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 0123456666776 99999985421 2334468889999986
No 212
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=60.50 E-value=96 Score=27.70 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=34.7
Q ss_pred EEEEEcC---C-CccCHHHHH-HHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeC
Q 010940 11 HFVLIPL---M-SPGHLIPMI-DMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEF 73 (497)
Q Consensus 11 ~il~~~~---p-~~GHi~P~l-~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~ 73 (497)
||+++-. | .+|-+--+. .|+..|+++||+|++.+.....+.-+. .-.|++...+|.
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-------~y~gv~l~~i~~ 63 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-------EYNGVRLVYIPA 63 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc-------ccCCeEEEEeCC
Confidence 6777654 2 245554443 577778888999999987654432211 122777777763
No 213
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=60.29 E-value=49 Score=28.73 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred ccccccCCCc------hhHHHHHhhCCceeeccc
Q 010940 367 IGGFLTHCGW------NSTLEGVSAGVPLVTCPL 394 (497)
Q Consensus 367 ~~~~I~HgG~------gt~~eal~~GvP~v~iP~ 394 (497)
.+++++|.|- +.+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 4447777774 478899999999999963
No 214
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=60.13 E-value=71 Score=32.83 Aligned_cols=88 Identities=10% Similarity=0.095 Sum_probs=56.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMD 88 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~ 88 (497)
.+|+++...+ ...+.+++.|.+-|-+|..+......+..+. ++ .. ...
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~----------------~~---------~~-~~~- 358 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK----------------LP---------VE-TVV- 358 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh----------------CC---------cC-cEE-
Confidence 4677776533 4678888889999999888776644321110 10 00 000
Q ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEc
Q 010940 89 KLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 148 (497)
.. + ...+++++++. ++|++|.+. ....+|+++|||++.+.
T Consensus 359 -~~------------D--~~~l~~~i~~~--~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 359 -IG------------D--LEDLEDLACAA--GADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred -eC------------C--HHHHHHHHhhc--CCCEEEECc---chHHHHHHcCCCEEEec
Confidence 00 0 12456777777 999999986 34679999999999754
No 215
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=59.87 E-value=25 Score=30.72 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=28.9
Q ss_pred HHhhHHHHHHHhhcCCCCcEEEeCCCCcchH-H--H--HHHc-CCCeEEEcc
Q 010940 104 SMLKQPFEQLFDKLHPRPSCIISGKNLPWTV-N--S--AIKF-KIPTILFDG 149 (497)
Q Consensus 104 ~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~-~--~--A~~l-giP~v~~~~ 149 (497)
..+...+.+++++. +||+||+...+.... . + ...+ ++|++++.+
T Consensus 75 ~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 75 RLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 34445688888888 999999998654333 2 1 1224 578776554
No 216
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=59.81 E-value=53 Score=27.33 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=41.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCe--EEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIK--VTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFP 74 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~--Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~ 74 (497)
+.||++|.--|+-.-++-++ ++|+..|.. |.++-+..+..-++.. ||++..++++
T Consensus 15 ~~MrFLIThnPtnaTln~fi---eELkKygvttvVRVCe~TYdt~~lek~---------GI~Vldw~f~ 71 (173)
T KOG2836|consen 15 KNMRFLITHNPTNATLNKFI---EELKKYGVTTVVRVCEPTYDTTPLEKE---------GITVLDWPFD 71 (173)
T ss_pred cceEEEEecCCCchhHHHHH---HHHHhcCCeEEEEecccccCCchhhhc---------CceEeecccc
Confidence 45999999999998888665 799999987 4444445555556655 8999988765
No 217
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=59.62 E-value=19 Score=33.57 Aligned_cols=99 Identities=12% Similarity=0.049 Sum_probs=53.6
Q ss_pred CCeEEEEeeCCCcC---CCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccc--cch-H
Q 010940 286 PGSVIYACLGSICG---LATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGW--APQ-V 359 (497)
Q Consensus 286 ~~~~V~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~--~pq-~ 359 (497)
+++.|.+..|+... .+.+.+.++++.|.+.+..+++..++..... + .-+.+.+......+.+.+- +.+ .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEK---E--IADQIAAGLQNPVINLAGKTSLRELA 178 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHH---H--HHHHHHTTHTTTTEEETTTS-HHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHH---H--HHHHHHHhcccceEeecCCCCHHHHH
Confidence 34478788877554 6678899999999887766665544332100 0 0011111111123444332 333 4
Q ss_pred HhhhcCCccccccCCCchhHHHHHhhCCceeec
Q 010940 360 LLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTC 392 (497)
Q Consensus 360 ~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~i 392 (497)
.++.++++ +|+.- .|.++=|.+.|+|+|++
T Consensus 179 ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 179 ALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 58888887 88874 47889999999999998
No 218
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=59.19 E-value=59 Score=30.58 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=53.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDK 89 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~ 89 (497)
++|+++..-+-| ..||+.|.++|+.|++.+...+.. .... +..... ..
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~---------~~~v~~-----------------G~ 50 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADL---------PGPVRV-----------------GG 50 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccC---------CceEEE-----------------CC
Confidence 367776554444 578999999999888766553322 0000 111100 00
Q ss_pred CCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcch-------HHHHHHcCCCeEEEcc
Q 010940 90 LPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWT-------VNSAIKFKIPTILFDG 149 (497)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~-------~~~A~~lgiP~v~~~~ 149 (497)
+ .-.+.+.+++++. ++++|| |...+++ ..+|+++|||++.+--
T Consensus 51 l--------------~~~~~l~~~l~~~--~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 51 F--------------GGAEGLAAYLREE--GIDLVI-DATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred C--------------CCHHHHHHHHHHC--CCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 0 0234566777777 999987 3333433 4468899999999653
No 219
>PRK05595 replicative DNA helicase; Provisional
Probab=58.79 E-value=92 Score=32.14 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=34.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCCCcchhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLA-EHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~-~rGH~Vt~~~~~~~~~~~~ 53 (497)
+++...|+.|=..-.+.+|..++ +.|+.|.|++.+...+.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHH
Confidence 45667789999999999998876 5699999999997665443
No 220
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=57.71 E-value=1.4e+02 Score=26.70 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=53.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCC--eEEEEeCCC-CcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGI--KVTIVTTPL-NTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCEN 86 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH--~Vt~~~~~~-~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~ 86 (497)
+||+++.++..+-+. +|.+.+.+.++ +|.++.+.. .....+. ....++.+..++.. .+.
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~------A~~~gip~~~~~~~----~~~----- 62 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISNKPDAYGLER------AAQAGIPTFVLSLK----DFP----- 62 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEECCccchHHHH------HHHcCCCEEEECcc----ccC-----
Confidence 478888887766555 55666766655 677654442 2221111 12236777665311 000
Q ss_pred CCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC-cchHHHHHHcCCCeEEEc
Q 010940 87 MDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL-PWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~ 148 (497)
........+.+++++. ++|++|+-.+. .....+-......++.+.
T Consensus 63 ---------------~~~~~~~~~~~~l~~~--~~D~iv~~~~~~il~~~~l~~~~~~~iNiH 108 (190)
T TIGR00639 63 ---------------SREAFDQAIIEELRAH--EVDLVVLAGFMRILGPTFLSRFAGRILNIH 108 (190)
T ss_pred ---------------chhhhhHHHHHHHHhc--CCCEEEEeCcchhCCHHHHhhccCCEEEEe
Confidence 0112224466677777 99999876543 333333333333344433
No 221
>PRK06321 replicative DNA helicase; Provisional
Probab=57.41 E-value=1.3e+02 Score=31.33 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=34.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCCCcchhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAE-HGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 53 (497)
|++..-|+.|=..-.+.+|...+. .|+.|.|++.+...+.+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 466677999999999999999874 599999999987665443
No 222
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=57.02 E-value=51 Score=30.28 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=31.1
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 11 HFVLIPL--MSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 11 ~il~~~~--p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
+|.++++ ++.|-..-.-.|+.+|+++|+.|.++-..-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 4655665 588999999999999999999999987664
No 223
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=56.94 E-value=26 Score=28.42 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHHHH
Q 010940 22 HLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNFFH 101 (497)
Q Consensus 22 Hi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (497)
+-.-++.+|+.|.+.|++|. +++...+.+... |+.+..+.- ... . ... .
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~------~~~-~---~~~---~------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAW------PSE-E---PQN---D------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeee------ccC-C---CCC---C-------
Confidence 55678899999999999883 455555444433 555544420 000 0 000 0
Q ss_pred HHHHhhHHHHHHHhhcCCCCcEEEeCCC---------CcchHHHHHHcCCCeEE
Q 010940 102 AASMLKQPFEQLFDKLHPRPSCIISGKN---------LPWTVNSAIKFKIPTIL 146 (497)
Q Consensus 102 ~~~~~~~~l~~ll~~~~~~pDlvI~D~~---------~~~~~~~A~~lgiP~v~ 146 (497)
...+.+++++. ++|+||.-.. .+.....|-.+|||+++
T Consensus 60 -----~~~i~~~i~~~--~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 -----KPSLRELLAEG--KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -----chhHHHHHHcC--CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 13456666666 9999998542 13344568899999974
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=56.84 E-value=29 Score=30.52 Aligned_cols=44 Identities=11% Similarity=-0.085 Sum_probs=36.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
+++.-.|+.|=..-.+.++....+.|..|.|++.+...+.+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHH
Confidence 56777889999999999999999999999999988766655443
No 225
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=56.26 E-value=2.9e+02 Score=31.48 Aligned_cols=109 Identities=18% Similarity=0.104 Sum_probs=65.6
Q ss_pred cccchHH---hhhcCCcccccc---CCCchh-HHHHHhhCC---ceeeccccccccchHHHHHHHHc-ceEEeccccccc
Q 010940 354 GWAPQVL---LLSHRAIGGFLT---HCGWNS-TLEGVSAGV---PLVTCPLFAEQFYNEKLAVQVLG-IGVSVGIEAAVT 422 (497)
Q Consensus 354 ~~~pq~~---lL~~~~~~~~I~---HgG~gt-~~eal~~Gv---P~v~iP~~~DQ~~na~~~~~~~G-~G~~l~~~~~~~ 422 (497)
..+|+.+ ++..+++ ++. .-|+|. ..|+++++. -+++++-++ .-| +.+| -|+.+++
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa----~~L~~~AllVNP----- 511 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAA----QSLGAGAILVNP----- 511 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chH----HHhCCceEEECC-----
Confidence 3456554 5566777 443 348774 559999965 233333221 122 2254 5677777
Q ss_pred cccccccccccCHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhhccC
Q 010940 423 WGLEDKSGLVIKREKVKEAIEKLMD-RGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFVIQQTRGQ 494 (497)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~ai~~vl~-~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~~~~~~~~ 494 (497)
.+.+.+.+||.++|+ + .+.-+++.+++.+... ..+...=++.|+++|..+...|
T Consensus 512 ----------~D~~~vA~AI~~AL~M~---~~Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~~~~~~ 566 (934)
T PLN03064 512 ----------WNITEVAASIAQALNMP---EEEREKRHRHNFMHVT-----THTAQEWAETFVSELNDTVVEA 566 (934)
T ss_pred ----------CCHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHHHHhhh
Confidence 678999999999887 4 1333444444444443 4456667788888887765443
No 226
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=56.21 E-value=15 Score=32.80 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=32.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
||++--+++.|=+.-.+.+.++|++.|++|+++.++.-
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 68888788888887778999999999999999988754
No 227
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=55.80 E-value=84 Score=27.07 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=24.2
Q ss_pred CCCccCHHHHHHHHHHHHHCCCeEEEE
Q 010940 17 LMSPGHLIPMIDMARLLAEHGIKVTIV 43 (497)
Q Consensus 17 ~p~~GHi~P~l~LA~~L~~rGH~Vt~~ 43 (497)
.+..|-..-.+.|++.|+++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 467788999999999999999999886
No 228
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=55.79 E-value=23 Score=30.65 Aligned_cols=34 Identities=26% Similarity=0.134 Sum_probs=27.2
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEE
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASSQPFIWV 322 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 322 (497)
.+|+|+||........++..+.+|.+.+..-++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 7999999999877788888899998877543443
No 229
>PRK08506 replicative DNA helicase; Provisional
Probab=55.70 E-value=1.5e+02 Score=30.83 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=35.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
+++...|+.|=..-.+.+|......|+.|.|++.+...+.+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 566777999999999999999988999999999997765444
No 230
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=54.55 E-value=1.1e+02 Score=26.62 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=22.3
Q ss_pred ccccccCCCc------hhHHHHHhhCCceeecc
Q 010940 367 IGGFLTHCGW------NSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 367 ~~~~I~HgG~------gt~~eal~~GvP~v~iP 393 (497)
..++++|+|- +.+.+|...++|+|+|.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3448888885 48899999999999996
No 231
>PRK14098 glycogen synthase; Provisional
Probab=53.93 E-value=22 Score=37.29 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=30.3
Q ss_pred CcEEEEEcCC------CccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 9 QLHFVLIPLM------SPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 9 ~~~il~~~~p------~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
.|||++++.- +.|=-.-.-+|.++|+++||+|.++.|-.
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4899998763 33444556788999999999999999854
No 232
>PRK09620 hypothetical protein; Provisional
Probab=53.83 E-value=23 Score=32.87 Aligned_cols=38 Identities=11% Similarity=-0.088 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCccCHHH------------HHHHHHHHHHCCCeEEEEeCC
Q 010940 9 QLHFVLIPLMSPGHLIP------------MIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P------------~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
.++|+++..|+.=.+.| -..||++|.++|++|+++..+
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46888887775544333 367999999999999999754
No 233
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=53.76 E-value=1e+02 Score=31.69 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEc
Q 010940 108 QPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 108 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 148 (497)
..+++++++. +||++|.+.. ...+|+++|||++.+.
T Consensus 362 ~e~~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 4567777777 9999999974 4678999999998754
No 234
>PRK08760 replicative DNA helicase; Provisional
Probab=53.72 E-value=85 Score=32.74 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCCCcchhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAE-HGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 53 (497)
+++..-|+.|=..-.+.+|...+. .|+.|.|++.+...+.+.
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~ 274 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLA 274 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHH
Confidence 566777999999999999998875 599999999987665433
No 235
>PRK05636 replicative DNA helicase; Provisional
Probab=53.66 E-value=82 Score=33.13 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=33.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCCCcchh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLA-EHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~-~rGH~Vt~~~~~~~~~~~ 52 (497)
|++..-|+.|=..-.+.+|...+ +.|..|.|++.+...+.+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 46677799999999999998876 468999999988766544
No 236
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=53.47 E-value=26 Score=32.15 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
++.+|++.+.++-.|-....-++-.|..+|++|++++..--.+.+...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 467999999999999999999999999999999999876544444333
No 237
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=52.65 E-value=77 Score=33.14 Aligned_cols=45 Identities=2% Similarity=-0.016 Sum_probs=38.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
-+++.-.|+.|=..-.+.++.+.+++|..|.+++.+...+.+...
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 467777799999999999999999999999999988776655544
No 238
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=52.40 E-value=87 Score=26.63 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=21.8
Q ss_pred cccccCCCc------hhHHHHHhhCCceeeccc
Q 010940 368 GGFLTHCGW------NSTLEGVSAGVPLVTCPL 394 (497)
Q Consensus 368 ~~~I~HgG~------gt~~eal~~GvP~v~iP~ 394 (497)
.++++|+|- +.+.+|...++|+|++.-
T Consensus 61 ~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 348888664 588899999999999964
No 239
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=52.11 E-value=17 Score=33.82 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=25.9
Q ss_pred EEEEEcCCCccCHHH------------HHHHHHHHHHCCCeEEEEeCC
Q 010940 11 HFVLIPLMSPGHLIP------------MIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 11 ~il~~~~p~~GHi~P------------~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
||+++..|+.=.+.| -.+||++|.++||+|+++...
T Consensus 2 ~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 2 KILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred EEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 566666665544433 367899999999999998743
No 240
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=51.95 E-value=1.6e+02 Score=25.55 Aligned_cols=99 Identities=11% Similarity=-0.015 Sum_probs=56.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe---CCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT---TPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~---~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
-|-+++.++.|=....+.+|-....+|++|.++- ........... ..-+++.+...... .....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l-----~~l~~v~~~~~g~~-------~~~~~- 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKAL-----ERLPNIEIHRMGRG-------FFWTT- 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHH-----HhCCCcEEEECCCC-------CccCC-
Confidence 4677888899999999999999999999999943 32111111111 11236777666321 11110
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL 130 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~ 130 (497)
.... .-............+.+.+. ++|+||-|-+.
T Consensus 71 ---~~~~---~~~~~a~~~~~~a~~~~~~~--~~dLlVLDEi~ 105 (159)
T cd00561 71 ---ENDE---EDIAAAAEGWAFAKEAIASG--EYDLVILDEIN 105 (159)
T ss_pred ---CChH---HHHHHHHHHHHHHHHHHhcC--CCCEEEEechH
Confidence 1111 11122233334455555555 99999999853
No 241
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=51.76 E-value=48 Score=33.65 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=26.0
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHHCCCeEEEE
Q 010940 12 FVLI-PLMSPGHLIPMIDMARLLAEHGIKVTIV 43 (497)
Q Consensus 12 il~~-~~p~~GHi~P~l~LA~~L~~rGH~Vt~~ 43 (497)
|+|. +..+.|-..-++.|.++|++||++|.=+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 4444 3467799999999999999999999754
No 242
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=51.46 E-value=1.2e+02 Score=28.71 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
+...|.|+-.|+.|--.-.=.|++.|+++||+|-+++-.+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS 68 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS 68 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC
Confidence 45788999999999999999999999999999999986543
No 243
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=51.44 E-value=18 Score=32.24 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=34.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
+||++...++.|=+. ...+.+.|+++|++|.++.++.-...+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 378888788777665 8999999999999999999886555544
No 244
>PRK06849 hypothetical protein; Provisional
Probab=50.97 E-value=31 Score=34.85 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
+++++|+++.... ...+.+|+.|.++||+|.++....
T Consensus 2 ~~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3578898874333 368999999999999999997664
No 245
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=50.84 E-value=1e+02 Score=29.69 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=15.9
Q ss_pred HhhHHHHHHHhhcCCCCcEEEeC
Q 010940 105 MLKQPFEQLFDKLHPRPSCIISG 127 (497)
Q Consensus 105 ~~~~~l~~ll~~~~~~pDlvI~D 127 (497)
.....+.+++++. +||+||+-
T Consensus 108 ~~~~~L~~iIr~~--~PdvVvT~ 128 (283)
T TIGR03446 108 EAAEPLVRVIREF--RPHVITTY 128 (283)
T ss_pred HHHHHHHHHHHHc--CCEEEEec
Confidence 3456677788888 99999873
No 246
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=49.75 E-value=12 Score=32.29 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=26.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
||.++-.+..|+ ++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 577777777775 79999999999999999774
No 247
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=49.68 E-value=51 Score=25.19 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCc--cCHHHHHHHHHHHHHCCCeEEEEe
Q 010940 9 QLHFVLIPLMSP--GHLIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 9 ~~~il~~~~p~~--GHi~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
|.+|+++|.... .+..-...|+..|++.|.+|.+-.
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 457889887653 567788999999999999998854
No 248
>PTZ00445 p36-lilke protein; Provisional
Probab=49.51 E-value=1.3e+02 Score=27.45 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=23.2
Q ss_pred cCHHH-HHHHHHHHHHCCCeEEEEeCCCC
Q 010940 21 GHLIP-MIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 21 GHi~P-~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
+|+.| +..+.++|.++|..|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 45566 88999999999999999996654
No 249
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=49.04 E-value=3.3e+02 Score=28.38 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=55.4
Q ss_pred EeccccchHH---hhhcCCcccccc--CCCchh-HHHHHhhCCc---eeeccccccccchHHHHHHHHc-ceEEeccccc
Q 010940 351 IIRGWAPQVL---LLSHRAIGGFLT--HCGWNS-TLEGVSAGVP---LVTCPLFAEQFYNEKLAVQVLG-IGVSVGIEAA 420 (497)
Q Consensus 351 ~v~~~~pq~~---lL~~~~~~~~I~--HgG~gt-~~eal~~GvP---~v~iP~~~DQ~~na~~~~~~~G-~G~~l~~~~~ 420 (497)
++..-+|+.. ++..+++ ++|| ..|+|. ..|-+++..+ +|++- ++-=|+ +.++ .++.+++
T Consensus 356 ~~~~~~~~~~~~aly~~aDv-~lvTslrDGmNLva~Eyva~q~~~~GvLiLS----efaGaa---~~L~~~al~VNP--- 424 (474)
T PF00982_consen 356 YIYRSLSFEELLALYRAADV-ALVTSLRDGMNLVAKEYVACQDDNPGVLILS----EFAGAA---EQLSEAALLVNP--- 424 (474)
T ss_dssp EE-S---HHHHHHHHHH-SE-EEE--SSBS--HHHHHHHHHS-TS--EEEEE----TTBGGG---GT-TTS-EEE-T---
T ss_pred EEecCCCHHHHHHHHHhhhh-EEecchhhccCCcceEEEEEecCCCCceEee----ccCCHH---HHcCCccEEECC---
Confidence 3444456544 5666777 4554 688885 4677777765 44442 222222 3377 4588887
Q ss_pred cccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Q 010940 421 VTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFVI 488 (497)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~~ 488 (497)
++.+++++||.+.|+=+ .++-+.+.+++.+.+. ..+...=++.|+++|.
T Consensus 425 ------------~d~~~~A~ai~~AL~M~--~~Er~~r~~~~~~~v~-----~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 425 ------------WDIEEVADAIHEALTMP--PEERKERHARLREYVR-----EHDVQWWAESFLRDLK 473 (474)
T ss_dssp ------------T-HHHHHHHHHHHHT----HHHHHHHHHHHHHHHH-----HT-HHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhH-----hCCHHHHHHHHHHHhh
Confidence 67999999999998731 1344555555555555 2334555666766653
No 250
>PRK09165 replicative DNA helicase; Provisional
Probab=48.51 E-value=1.8e+02 Score=30.50 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC---------------CCeEEEEeCCCCcchhhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEH---------------GIKVTIVTTPLNTTRFNI 54 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~r---------------GH~Vt~~~~~~~~~~~~~ 54 (497)
+++..-|+.|=..-.+.+|...+.+ |..|.|++.+...+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 5667778999999999999888753 789999999987765443
No 251
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=48.19 E-value=23 Score=36.63 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCCcEEEEEcCCCccCHHHH------------HHHHHHHHHCCCeEEEEeCC
Q 010940 7 AHQLHFVLIPLMSPGHLIPM------------IDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~------------l~LA~~L~~rGH~Vt~~~~~ 46 (497)
.+.+||+++..|+.=.+.|. .+||+++..+|++||+++.+
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCC
Confidence 35679999999999888875 68999999999999999966
No 252
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=48.10 E-value=1.1e+02 Score=27.70 Aligned_cols=146 Identities=9% Similarity=0.002 Sum_probs=73.4
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCC
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRA 366 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~ 366 (497)
+.++.|..|.++ ...++.|...+..+.+.... +.+.+........+.......+...+..++
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~-----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~ad 72 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE-----------LTENLVKLVEEGKIRWKQKEFEPSDIVDAF 72 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC-----------CCHHHHHHHhCCCEEEEecCCChhhcCCce
Confidence 348888887665 33456666677776665431 112222222223344433333455566666
Q ss_pred ccccccCCCchhHHHHHh----hCCceeeccccccccchHH-----HHHHHHcceEEeccccccccccccccccccCHHH
Q 010940 367 IGGFLTHCGWNSTLEGVS----AGVPLVTCPLFAEQFYNEK-----LAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREK 437 (497)
Q Consensus 367 ~~~~I~HgG~gt~~eal~----~GvP~v~iP~~~DQ~~na~-----~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~ 437 (497)
+ +|.--+.-.+.+.++ .++++-+ .|.+..+. .+ ++-++-+.+. ++|+++.+ ...
T Consensus 73 l--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIs---------T~G~sP~l-a~~ 135 (202)
T PRK06718 73 L--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVS---------TDGASPKL-AKK 135 (202)
T ss_pred E--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEE---------CCCCChHH-HHH
Confidence 6 777666555554443 4444333 35443332 22 2112222222 12222222 245
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 010940 438 VKEAIEKLMDRGKQGEKRRKRARQLGEIANRA 469 (497)
Q Consensus 438 l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a 469 (497)
|++.|.+++ ++....+-+...++++.+++.
T Consensus 136 lr~~ie~~~--~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 136 IRDELEALY--DESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHc--chhHHHHHHHHHHHHHHHHHh
Confidence 666676666 334566777888888888764
No 253
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=48.01 E-value=1.9e+02 Score=29.95 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEE
Q 010940 108 QPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILF 147 (497)
Q Consensus 108 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 147 (497)
..+.+++++. +||++|... ....+|+++|||++.+
T Consensus 385 ~e~~~~i~~~--~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEY--KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhc--CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 3466667777 999999874 3466889999999874
No 254
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=47.53 E-value=25 Score=34.23 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=34.3
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcch
Q 010940 11 HFVLIPL-MSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTR 51 (497)
Q Consensus 11 ~il~~~~-p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (497)
|++|+.. |+.|=..-..++|-.++++|++|.++++++.+..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 5666665 8999999999999999999999999999877653
No 255
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.43 E-value=1.9e+02 Score=29.41 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEE
Q 010940 109 PFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILF 147 (497)
Q Consensus 109 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 147 (497)
.+.+.++.. +||++|.+.. ...+|+++|+|++..
T Consensus 347 e~~~~i~~~--~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEK--KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhc--CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 455666676 9999999953 357899999999853
No 256
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=47.41 E-value=2.3e+02 Score=26.04 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=35.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCCCcchhhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEH-GIKVTIVTTPLNTTRFNI 54 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~ 54 (497)
+++...|+.|=..-.+.++..++.+ |+.|.|++.+...+.+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 4666678889999999999998887 999999999876654443
No 257
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=47.39 E-value=2.4e+02 Score=27.69 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCc-----cCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCC
Q 010940 9 QLHFVLIPLMSP-----GHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQG 83 (497)
Q Consensus 9 ~~~il~~~~p~~-----GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~ 83 (497)
++.|+|.|..+. --..-+..|++.|.++|.+|.++.++...+..+..... +....
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~-------~~~~~------------- 234 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG-------LPNAV------------- 234 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh-------cCCcc-------------
Confidence 356777776233 23557889999999999999999888444444433211 00000
Q ss_pred CCCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 84 CENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
.... .....++..+++ ..|++|+.. ++...+|..+|.|+|.++..
T Consensus 235 --~l~~--------------k~sL~e~~~li~----~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 235 --ILAG--------------KTSLEELAALIA----GADLVIGND--SGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred --ccCC--------------CCCHHHHHHHHh----cCCEEEccC--ChHHHHHHHcCCCEEEEECC
Confidence 0000 011122333443 679988765 57788999999999998865
No 258
>PLN02470 acetolactate synthase
Probab=47.31 E-value=53 Score=35.27 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=54.0
Q ss_pred eeCCCcCCCHH--hHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEecc--------ccchHHhh
Q 010940 293 CLGSICGLATW--QLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRG--------WAPQVLLL 362 (497)
Q Consensus 293 s~GS~~~~~~~--~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~--------~~pq~~lL 362 (497)
+|||....+.. .-..+++.|++.|.+.|+-+.++.... +-+.+. ..+++.+.. +.-..--.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~------l~dal~---~~~~i~~i~~rhE~~A~~~Adgyar 72 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASME------IHQALT---RSNCIRNVLCRHEQGEVFAAEGYAK 72 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHH------HHHHHh---ccCCceEEEeccHHHHHHHHHHHHH
Confidence 46666553322 245688899999999888776654321 112221 122332221 11111111
Q ss_pred hcCCccccccCCCc------hhHHHHHhhCCceeecc
Q 010940 363 SHRAIGGFLTHCGW------NSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 363 ~~~~~~~~I~HgG~------gt~~eal~~GvP~v~iP 393 (497)
.+...+++++|.|- +.+.+|...++|+|+|.
T Consensus 73 ~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 73 ASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 22345568899885 48899999999999995
No 259
>PLN02240 UDP-glucose 4-epimerase
Probab=46.79 E-value=31 Score=34.05 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
+..++|++ .++.|.+- ..|++.|.++||+|+.+.
T Consensus 3 ~~~~~vlI--tGatG~iG--~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 3 LMGRTILV--TGGAGYIG--SHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCEEEE--ECCCChHH--HHHHHHHHHCCCEEEEEe
Confidence 44567777 46667664 456899999999999886
No 260
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=46.64 E-value=90 Score=32.55 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEE
Q 010940 110 FEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTIL 146 (497)
Q Consensus 110 l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 146 (497)
+.+.+++. +||++|.+ .....+|+++|||++.
T Consensus 385 ~~~~i~~~--~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 385 LYKMLKEA--KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHhhc--CCCEEEec---CchhhhhhhcCCCEEE
Confidence 44555566 99999997 4556789999999984
No 261
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=46.50 E-value=25 Score=33.22 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=39.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
...++|+-.|+.|=..=..+||.+|.++|+.|+|++.+.....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 45789999999998888999999999899999999988666555433
No 262
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=46.35 E-value=36 Score=30.04 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=43.1
Q ss_pred hcCCccccccCCCchhHHHHHhhCCceeeccccc-----------------------cccchHHHHHHHHcceEEecccc
Q 010940 363 SHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFA-----------------------EQFYNEKLAVQVLGIGVSVGIEA 419 (497)
Q Consensus 363 ~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~-----------------------DQ~~na~~~~~~~G~G~~l~~~~ 419 (497)
.+..++++|++||......... ++|+|-+|..+ ........+.+-+|+-+..-.-
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~- 108 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPY- 108 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEE-
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEE-
Confidence 3455556999999888888877 99999999732 2333455664556555444332
Q ss_pred ccccccccccccccCHHHHHHHHHHHHcC
Q 010940 420 AVTWGLEDKSGLVIKREKVKEAIEKLMDR 448 (497)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~ai~~vl~~ 448 (497)
-+++++...|.++..+
T Consensus 109 -------------~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 109 -------------DSEEEIEAAIKQAKAE 124 (176)
T ss_dssp -------------SSHHHHHHHHHHHHHT
T ss_pred -------------CCHHHHHHHHHHHHHc
Confidence 3678888888887654
No 263
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=46.30 E-value=1.8e+02 Score=28.59 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=24.9
Q ss_pred CCCcEEE-eCCCC-cchHHHHHHcCCCeEEEccchH
Q 010940 119 PRPSCII-SGKNL-PWTVNSAIKFKIPTILFDGMGC 152 (497)
Q Consensus 119 ~~pDlvI-~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 152 (497)
..||+|| .|... ..+..=|.++|||+|.++-+.+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 4799987 45533 4555569999999999887643
No 264
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=46.23 E-value=3e+02 Score=29.50 Aligned_cols=37 Identities=11% Similarity=0.006 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
++.++|+++-.+ .-...+++++++.|++|.++.+...
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLED 56 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 456789998777 3446677777888999999976543
No 265
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=45.99 E-value=1.7e+02 Score=25.34 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=32.4
Q ss_pred HhhHHHHHHHhhcCCCCcEEEeCCCC---cchHHHHHHcCCCeEEEccc
Q 010940 105 MLKQPFEQLFDKLHPRPSCIISGKNL---PWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 105 ~~~~~l~~ll~~~~~~pDlvI~D~~~---~~~~~~A~~lgiP~v~~~~~ 150 (497)
.+...+.+++++. +||+|++.... ..+..+|.++|.|++.-+..
T Consensus 70 ~~a~al~~~i~~~--~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 70 PYAPALVALAKKE--KPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 4455566777777 89999977744 35677899999999985554
No 266
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=45.91 E-value=59 Score=28.19 Aligned_cols=100 Identities=13% Similarity=0.017 Sum_probs=51.4
Q ss_pred cchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEec
Q 010940 274 YEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIR 353 (497)
Q Consensus 274 ~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~ 353 (497)
-.++-++|.++. ..+++-|.. .......++..+.+-.++=+++...... -+ ......+.
T Consensus 20 A~~lg~~La~~g---~~lv~Gg~~-----GlM~a~a~ga~~~gg~viGVlp~~l~~~------~~-------~~~~~i~~ 78 (159)
T TIGR00725 20 AYRLGKELAKKG---HILINGGRT-----GVMEAVSKGAREAGGLVVGILPDEDFAG------NP-------YLTIKVKT 78 (159)
T ss_pred HHHHHHHHHHCC---CEEEcCCch-----hHHHHHHHHHHHCCCeEEEECChhhccC------CC-------CceEEEEC
Confidence 355666776653 455553322 2333445555555555554444322100 00 00112233
Q ss_pred cc-cchHHhhhcCCccccccCCCchhHHH---HHhhCCceeeccc
Q 010940 354 GW-APQVLLLSHRAIGGFLTHCGWNSTLE---GVSAGVPLVTCPL 394 (497)
Q Consensus 354 ~~-~pq~~lL~~~~~~~~I~HgG~gt~~e---al~~GvP~v~iP~ 394 (497)
++ .+-..++...+-.+++--||.||..| ++.+++|+++++.
T Consensus 79 ~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 79 GMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 43 33444444433346677799997655 5889999999874
No 267
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=45.73 E-value=1.2e+02 Score=31.15 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=35.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTT 50 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (497)
.-|+++-.++.|=..-...||..|+++|++|.+++...++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 45677777899999999999999999999999999887764
No 268
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=45.68 E-value=88 Score=28.18 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=40.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEe
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQL 71 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i 71 (497)
-|+|+-..+.|=..-...||..++.+|..|.+++...++--......... ...++.+...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a-~~l~vp~~~~ 62 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYA-EILGVPFYVA 62 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHH-HHHTEEEEES
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHH-HHhccccchh
Confidence 46777778999999999999999999999999998877643322222211 2225666554
No 269
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=45.16 E-value=16 Score=37.76 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=39.3
Q ss_pred hHHHHHhhCCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHH
Q 010940 378 STLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRR 456 (497)
Q Consensus 378 t~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~ 456 (497)
++.||+++|+|+|+.= +..=+..+ +..--|..+++.+ -....+.+++.++.+|++....+.
T Consensus 381 v~IEAMa~glPvvAt~----~GGP~EiV-~~~~tG~l~dp~~-------------e~~~~~a~~~~kl~~~p~l~~~~~ 441 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATN----NGGPAEIV-VHGVTGLLIDPGQ-------------EAVAELADALLKLRRDPELWARMG 441 (495)
T ss_pred eeHHHHhcCCCEEEec----CCCceEEE-EcCCcceeeCCch-------------HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7899999999999873 33333333 3234566665532 334479999999999943333333
No 270
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=44.25 E-value=2.4e+02 Score=28.34 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (497)
+++.-.|+.|=..-++.+|..+.++|..|.|++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45666688999999999999999999999999887554433
No 271
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=44.16 E-value=85 Score=32.19 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
+||||++-.+++-| +|++.|++-++-..+++.+.|
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 57999998888776 789999998865555554433
No 272
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=43.97 E-value=52 Score=32.82 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=62.8
Q ss_pred CCCeEec-cccchHHhhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcceEEecccccccccc
Q 010940 347 GRGFIIR-GWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGL 425 (497)
Q Consensus 347 ~~nv~v~-~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~ 425 (497)
..++... ...+-.++|..+++ .||=- .+.+.|.+..++|++....-.|.+. +. -|...+... +.+
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~------~~--rg~~~~~~~---~~p 316 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYE------KE--RGFYFDYEE---DLP 316 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTT------TT--SSBSS-TTT---SSS
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHh------hc--cCCCCchHh---hCC
Confidence 4566543 44567789989998 99986 4589999999999997764444441 21 333333211 111
Q ss_pred ccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHH
Q 010940 426 EDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIE 481 (497)
Q Consensus 426 ~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~ 481 (497)
... .-+.++|.++|..+++| ...++++.+++.+.+-.. ..|.++++-++
T Consensus 317 g~~---~~~~~eL~~~i~~~~~~---~~~~~~~~~~~~~~~~~~-~Dg~s~eri~~ 365 (369)
T PF04464_consen 317 GPI---VYNFEELIEAIENIIEN---PDEYKEKREKFRDKFFKY-NDGNSSERIVN 365 (369)
T ss_dssp S-E---ESSHHHHHHHHTTHHHH---HHHTHHHHHHHHHHHSTT---S-HHHHHHH
T ss_pred Cce---eCCHHHHHHHHHhhhhC---CHHHHHHHHHHHHHhCCC-CCchHHHHHHH
Confidence 111 25679999999999886 234556666777776432 44555444333
No 273
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=43.96 E-value=2.9e+02 Score=28.31 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=34.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCCCcchhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAE-HGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 53 (497)
+++...|+.|=..-.+.+|..++. .|+.|.|++.+...+.+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 466677899999999999998875 599999999998766543
No 274
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.94 E-value=63 Score=27.15 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=37.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchh
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (497)
.+|++-+..+-+|-.----++..|.++|++|..+...-..+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 4799999999999999999999999999999999876544433
No 275
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.66 E-value=47 Score=28.40 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=52.3
Q ss_pred ccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhc
Q 010940 392 CPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIG 471 (497)
Q Consensus 392 iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~ 471 (497)
.|....+..+|+.+++ .--++ .. -..+.|.+.+.+++.| +++.+-.+.+++..+..+
T Consensus 78 yPWt~~~L~aa~el~e-e~eeL--s~---------------deke~~~~sl~dL~~d---~PkT~vA~~rfKk~~~K~-- 134 (158)
T PF10083_consen 78 YPWTENALEAANELIE-EDEEL--SP---------------DEKEQFKESLPDLTKD---TPKTKVAATRFKKILSKA-- 134 (158)
T ss_pred CchHHHHHHHHHHHHH-HhhcC--CH---------------HHHHHHHhhhHHHhhc---CCccHHHHHHHHHHHHHH--
Confidence 5666677777777755 22221 22 2246799999999987 588888999999999888
Q ss_pred cCCChHHHHHHHHHHHHh
Q 010940 472 VGGSSHRNIEMLIEFVIQ 489 (497)
Q Consensus 472 ~gg~~~~~~~~~~~~~~~ 489 (497)
|-..-..+.+++-++..
T Consensus 135 -g~~v~~~~~dIlVdv~S 151 (158)
T PF10083_consen 135 -GSIVGDAIRDILVDVAS 151 (158)
T ss_pred -hHHHHHHHHHHHHHHHH
Confidence 66676777777766644
No 276
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=43.34 E-value=30 Score=30.87 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=34.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCCCcchhh
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAE-HGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 53 (497)
+||++.-+++-| .+=...|+++|.+ .||+|.++.++.-...+.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 378887788777 6669999999999 599999999986555444
No 277
>PRK05920 aromatic acid decarboxylase; Validated
Probab=42.51 E-value=31 Score=31.35 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=34.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
.+||++.-.++.+= .=.+.+.+.|++.||+|.++.++.-.+.+.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 35777776665555 688999999999999999999886555444
No 278
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=42.11 E-value=3.2e+02 Score=28.22 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=27.3
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 12 FVLIPLM-SPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 12 il~~~~p-~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
|+|.... ..|=..-...|++.|+++|++|..+=+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 5555443 468889999999999999999999854
No 279
>PRK10490 sensor protein KdpD; Provisional
Probab=41.99 E-value=28 Score=39.58 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
++||.+=..|+.|-.+-||.-|.+|+++|++|.+-.-+..
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 6899999999999999999999999999999998765544
No 280
>PRK10867 signal recognition particle protein; Provisional
Probab=41.85 E-value=1.4e+02 Score=30.63 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=37.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCCCcchh
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEH-GIKVTIVTTPLNTTRF 52 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~r-GH~Vt~~~~~~~~~~~ 52 (497)
+.-|+++..++.|=..-...||..|+++ |+.|.++..+.++...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 3445677778999999999999999999 9999999998777643
No 281
>PRK11519 tyrosine kinase; Provisional
Probab=41.83 E-value=65 Score=35.64 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=34.0
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Q 010940 8 HQLHFVLIPL--MSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTT 50 (497)
Q Consensus 8 ~~~~il~~~~--p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (497)
.+.|++++++ |+.|=..-...||..|++.|++|.++-......
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~ 568 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKG 568 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 4556666655 788999999999999999999999997654433
No 282
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=41.60 E-value=2.5e+02 Score=25.42 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=73.3
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCc
Q 010940 288 SVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAI 367 (497)
Q Consensus 288 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~ 367 (497)
.++.|..|..+ ..-++.|.+.+..+.+...... +++.+-....++....--.+...+..+.+
T Consensus 11 ~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~~-----------~~l~~l~~~~~i~~~~~~~~~~dl~~~~l 72 (205)
T TIGR01470 11 AVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEELE-----------SELTLLAEQGGITWLARCFDADILEGAFL 72 (205)
T ss_pred eEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCCC-----------HHHHHHHHcCCEEEEeCCCCHHHhCCcEE
Confidence 48888777665 3335666678887776654221 22222112234544221223344655665
Q ss_pred cccccCCCchhHH-----HHHhhCCceeec--cccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHH
Q 010940 368 GGFLTHCGWNSTL-----EGVSAGVPLVTC--PLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKE 440 (497)
Q Consensus 368 ~~~I~HgG~gt~~-----eal~~GvP~v~i--P~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (497)
+|..-|...+. +|-..|+|+-++ |-..| +.+-..+ + .| ++.+... ++|+++.+ ...|++
T Consensus 73 --Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~-~g-~l~iais-------T~G~sP~l-a~~lr~ 138 (205)
T TIGR01470 73 --VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-D-RS-PVVVAIS-------SGGAAPVL-ARLLRE 138 (205)
T ss_pred --EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-E-cC-CEEEEEE-------CCCCCcHH-HHHHHH
Confidence 77777765333 344567777332 22222 1122222 2 22 2222222 12222223 256777
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q 010940 441 AIEKLMDRGKQGEKRRKRARQLGEIANRA 469 (497)
Q Consensus 441 ai~~vl~~~~~~~~~~~~a~~~~~~~~~a 469 (497)
.|.+.+. +....+-+...++++.+++.
T Consensus 139 ~ie~~l~--~~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 139 RIETLLP--PSLGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHhcc--hhHHHHHHHHHHHHHHHHhh
Confidence 7777774 23456677777777777654
No 283
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=41.48 E-value=2.8e+02 Score=27.04 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=23.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|||+|+..+..+ +...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 478887666543 67778899999998866643
No 284
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=41.19 E-value=2.7e+02 Score=25.34 Aligned_cols=45 Identities=13% Similarity=0.032 Sum_probs=34.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
-+++...|+.|=..-.+.++....++|+.|.|++.+...+.+...
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 356666678888888888888887889999999998766554443
No 285
>PRK07773 replicative DNA helicase; Validated
Probab=40.78 E-value=1.8e+02 Score=33.02 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=35.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCCCcchhhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEH-GIKVTIVTTPLNTTRFNI 54 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~~ 54 (497)
|++..-|+.|=..-.+.+|...+.+ |..|.|++-+...+.+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 5667779999999999999998754 889999998887765443
No 286
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=40.42 E-value=3.8e+02 Score=26.60 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHH-HHHHcCCCeEEEccchHHHHH
Q 010940 93 RDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVN-SAIKFKIPTILFDGMGCFACC 156 (497)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~-~A~~lgiP~v~~~~~~~~~~~ 156 (497)
...+..+..+...+.-.++++++= .||+.|-..-.++... +.+..++|++++..-|.++.-
T Consensus 126 ~~hfTllgQaigsmIl~~Eai~r~---~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~D 187 (465)
T KOG1387|consen 126 WKHFTLLGQAIGSMILAFEAIIRF---PPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTD 187 (465)
T ss_pred ccceehHHHHHHHHHHHHHHHHhC---CchheEecCCCcchhHHHHHHccCceEEEEecccccHH
Confidence 345556677788888889999864 9999995554444433 456789999998876665543
No 287
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=40.39 E-value=19 Score=30.06 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=26.0
Q ss_pred CccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 19 SPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 19 ~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
..-.+.-.+-++..|+++||+|++++++.-...++
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 33445667889999999999999999995544443
No 288
>PRK00784 cobyric acid synthase; Provisional
Probab=40.37 E-value=3.6e+02 Score=28.17 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=29.1
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 11 HFVLIPL-MSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 11 ~il~~~~-p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
.|++... ...|=..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 5777755 4589999999999999999999987644
No 289
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=40.17 E-value=49 Score=26.82 Aligned_cols=39 Identities=15% Similarity=0.039 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTT 50 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (497)
++..+.++..|-.....++..|.++|++|.++......+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~ 40 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPE 40 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHH
Confidence 577888899999999999999999999999997654433
No 290
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.06 E-value=33 Score=34.54 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=34.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
|++---|+-|--.=+|.++..|+++| .|.|++.+.....+.
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 45555689999999999999999999 999999997665543
No 291
>PRK07206 hypothetical protein; Provisional
Probab=40.03 E-value=1.1e+02 Score=31.21 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=24.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
++|+++-.... ...++++|+++|++|.++....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 47888776433 3569999999999999888653
No 292
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=39.15 E-value=2.6e+02 Score=28.72 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=35.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCCCcchh
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLA-EHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~-~rGH~Vt~~~~~~~~~~~ 52 (497)
.-|+++..++.|=..-...||..|. ++|++|.++..+.++...
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 3456777789999999999999997 589999999998776643
No 293
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=39.02 E-value=31 Score=30.55 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=31.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
||++.-.++.| ..-...+.+.|+++|++|.++.++.-...+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 67666666554 4466799999999999999999885444433
No 294
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=38.84 E-value=1.6e+02 Score=27.79 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=36.6
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcch
Q 010940 8 HQLHFVLIPL-MSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTR 51 (497)
Q Consensus 8 ~~~~il~~~~-p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~ 51 (497)
..+|-.|+-. ++.|-..=..+||-.|+.-+|.|.++++.+-+-.
T Consensus 17 ~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNl 61 (323)
T KOG2825|consen 17 TSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNL 61 (323)
T ss_pred ceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccch
Confidence 4566666666 7889999999999999999999999998875543
No 295
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=38.82 E-value=1.5e+02 Score=29.24 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=59.4
Q ss_pred cEEEEEcCCCccC-----HHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCC
Q 010940 10 LHFVLIPLMSPGH-----LIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGC 84 (497)
Q Consensus 10 ~~il~~~~p~~GH-----i~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~ 84 (497)
.-|+|.|..+.|- ..-+..|++.|.++|++|.+++.+...+..+..... .+. ......
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~------------~~~-----~~~~~~ 243 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAA------------LNT-----EQQAWC 243 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHh------------ccc-----ccccce
Confidence 3466665432221 335789999998889999988877655544433110 000 000000
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 85 ENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
.... ......++..+++ +-|++|+.. ++...+|..+|+|++.++..
T Consensus 244 ~~l~--------------g~~sL~el~ali~----~a~l~I~nD--TGp~HlAaA~g~P~valfGp 289 (348)
T PRK10916 244 RNLA--------------GETQLEQAVILIA----ACKAIVTND--SGLMHVAAALNRPLVALYGP 289 (348)
T ss_pred eecc--------------CCCCHHHHHHHHH----hCCEEEecC--ChHHHHHHHhCCCEEEEECC
Confidence 0000 0111233445555 569999775 67788999999999997753
No 296
>PRK08322 acetolactate synthase; Reviewed
Probab=38.45 E-value=96 Score=32.93 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.5
Q ss_pred ccccccCCCc------hhHHHHHhhCCceeecc
Q 010940 367 IGGFLTHCGW------NSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 367 ~~~~I~HgG~------gt~~eal~~GvP~v~iP 393 (497)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 4458888885 48899999999999995
No 297
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=38.35 E-value=63 Score=31.79 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=31.2
Q ss_pred HHHhhHHHHHHHhhcCCCCcEEEeCCCCcch------H----HHHHHcCCCeEEEc
Q 010940 103 ASMLKQPFEQLFDKLHPRPSCIISGKNLPWT------V----NSAIKFKIPTILFD 148 (497)
Q Consensus 103 ~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~------~----~~A~~lgiP~v~~~ 148 (497)
.+.....+.+++++. +||++|+.+-+.++ . .+.++++||+++-.
T Consensus 65 ~eea~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 65 KEEALKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 355566677888888 99999999854322 1 14568999999743
No 298
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=38.33 E-value=3.5e+02 Score=25.49 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNT 49 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (497)
-+++.-.|+.|=..-.+.+|...+++|..|.|++.+...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 356777789999999999999988899999999988533
No 299
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=38.28 E-value=2.6e+02 Score=27.67 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCC-eEEEEeCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGI-KVTIVTTP 46 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH-~Vt~~~~~ 46 (497)
+..||+++-.++.| -.+|+.|+..|+ +++++=..
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 35689999888777 678999999998 66665433
No 300
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.14 E-value=1.7e+02 Score=29.83 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=40.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhH
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITI 56 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~ 56 (497)
|--|+++--=+.|-..-.-.||+-|+++|+.|.+++..-++..+-..+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL 147 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQL 147 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHH
Confidence 455677777899999999999999999999999999998886544443
No 301
>PRK11823 DNA repair protein RadA; Provisional
Probab=38.11 E-value=90 Score=32.23 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=34.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (497)
+++.-.|+.|=..-++.++..+.++|++|.|++.+...+.+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 46666789999999999999999999999999988665544
No 302
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=37.95 E-value=32 Score=30.63 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=30.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
|++.-+++-|-+.- ..|.+.|+++|++|.++.++.-...+.
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 55555566665554 899999999999999999986555443
No 303
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=37.93 E-value=26 Score=32.90 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 24 IPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 24 ~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
.-.-.|+++|+++||+|++++|..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 345678999999999999999875
No 304
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=37.74 E-value=24 Score=33.49 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=35.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCCCcchhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEH-GIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~r-GH~Vt~~~~~~~~~~~~ 53 (497)
-+++...++.|=..-.+.++..++.. |+.|.|++.+...+.+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~ 75 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTA 75 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHH
Confidence 45667778999999999999999877 99999999887654443
No 305
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=37.44 E-value=38 Score=29.87 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=30.2
Q ss_pred EEEEcCCCccCHHH-HHHHHHHHHH-CCCeEEEEeCCCCcchhh
Q 010940 12 FVLIPLMSPGHLIP-MIDMARLLAE-HGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 12 il~~~~p~~GHi~P-~l~LA~~L~~-rGH~Vt~~~~~~~~~~~~ 53 (497)
|++.-.++ ||... .+.+.++|++ +||+|.++.++.-.+.+.
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 44444554 77766 8899999985 599999999886665444
No 306
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=37.33 E-value=2.7e+02 Score=29.34 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=23.6
Q ss_pred HHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEE
Q 010940 112 QLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTIL 146 (497)
Q Consensus 112 ~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 146 (497)
+.+++. +||++|..... ..+|+++|||++.
T Consensus 392 ~~l~~~--~~Dllig~s~~---~~~A~k~gIP~ld 421 (513)
T TIGR01861 392 EAMEML--KPDIILTGKRP---GEVSKKMRVPYLN 421 (513)
T ss_pred HHHHhc--CCCEEEecCcc---chhHhhcCCCEEE
Confidence 344666 99999998753 3689999999976
No 307
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=37.22 E-value=3.1e+02 Score=24.58 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=24.4
Q ss_pred CCCcEEEeCC-CC-cchHHHHHHcCCCeEEEccch
Q 010940 119 PRPSCIISGK-NL-PWTVNSAIKFKIPTILFDGMG 151 (497)
Q Consensus 119 ~~pDlvI~D~-~~-~~~~~~A~~lgiP~v~~~~~~ 151 (497)
..||+||.-. .. ..+..=|.++|||++.++-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 5899997544 32 355556999999999988764
No 308
>PRK13604 luxD acyl transferase; Provisional
Probab=36.96 E-value=65 Score=31.34 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEE
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIV 43 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~ 43 (497)
++...++++++..++-..+..+|+.|.++|+.|.-+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 355788889998888878999999999999998765
No 309
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=36.91 E-value=1.1e+02 Score=32.79 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=22.5
Q ss_pred ccccccCCCc------hhHHHHHhhCCceeecc
Q 010940 367 IGGFLTHCGW------NSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 367 ~~~~I~HgG~------gt~~eal~~GvP~v~iP 393 (497)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4458888884 58899999999999994
No 310
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=36.09 E-value=3.9e+02 Score=26.13 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 108 QPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 108 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
.++..+++ +-|++|+.. ++...+|..+|+|+|.++..
T Consensus 252 ~el~ali~----~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 252 PQLAALID----HARLFIGVD--SVPMHMAAALGTPLVALFGP 288 (344)
T ss_pred HHHHHHHH----hCCEEEecC--CHHHHHHHHcCCCEEEEECC
Confidence 34455555 669999875 68888999999999997754
No 311
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=35.67 E-value=3e+02 Score=31.53 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEc
Q 010940 109 PFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 109 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 148 (497)
.+.+++++. +||++|.... ...+|+++|||++...
T Consensus 380 el~~~i~~~--~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 380 GLLRVMREK--MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHhc--CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 345666677 9999999763 3568999999999755
No 312
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=35.58 E-value=51 Score=31.78 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=25.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
|||+|+-.++.| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 478888777776 4678899999999999986
No 313
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=35.33 E-value=3.3e+02 Score=24.43 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=60.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCc---chhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNT---TRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGC 84 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~---~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~ 84 (497)
++-.|.+++.++.|=....+.+|-+...+|++|.++---... ...... ...+++.+...... ...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l-----~~l~~v~~~~~g~~-------~~~ 88 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLL-----EFGGGVEFHVMGTG-------FTW 88 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHH-----hcCCCcEEEECCCC-------Ccc
Confidence 456899999999999999999999999999999997522111 111111 12236777766421 010
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC
Q 010940 85 ENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL 130 (497)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~ 130 (497)
. . .... .-............+.+.+. ++|+||-|-+.
T Consensus 89 ~--~--~~~~---e~~~~~~~~~~~a~~~l~~~--~ydlvVLDEi~ 125 (191)
T PRK05986 89 E--T--QDRE---RDIAAAREGWEEAKRMLADE--SYDLVVLDELT 125 (191)
T ss_pred c--C--CCcH---HHHHHHHHHHHHHHHHHhCC--CCCEEEEehhh
Confidence 1 1 1111 11122333344455555555 99999999864
No 314
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=35.17 E-value=72 Score=28.67 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=30.4
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 9 QLHFVLIPL--MSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 9 ~~~il~~~~--p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
.+|++.++. ++.|=..-...||..|+++|++|.++=....
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 355544443 5778888999999999999999998865433
No 315
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=35.10 E-value=72 Score=30.96 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNT 49 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (497)
+|||+|+.+|.. ....-++|.+.||+|.-+.+.+.+
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~~~~eivaV~Tqpdk 36 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIEAGHEIVAVVTQPDK 36 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHhCCCceEEEEeCCCC
Confidence 368999887754 355667888899998877665444
No 316
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=35.00 E-value=1.8e+02 Score=27.96 Aligned_cols=108 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
+++||+++.++..+.+.-++. +-+-.+-+++|.++. .+.+.+... ....|+.+..++
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~-~~~~~~~~~~i~~vi--sn~~~~~~l-----A~~~gIp~~~~~--------------- 144 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLW-RWRSGELPVEIAAVI--SNHDDLRSL-----VERFGIPFHHVP--------------- 144 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHH-HHHcCCCCcEEEEEE--EcChhHHHH-----HHHhCCCEEEec---------------
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC-cchHHHHHHcCCCeEEEccc
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL-PWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 150 (497)
.-..........+.+++++. ++|++|.-.+. .....+-....-.++.+.++
T Consensus 145 ----------~~~~~~~~~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 145 ----------VTKETKAEAEARLLELIDEY--QPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred ----------cCccccchhHHHHHHHHHHh--CCCEEEEecchhhcCHHHHhhccCCceecCcc
No 317
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=34.76 E-value=1.1e+02 Score=32.67 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=22.0
Q ss_pred ccccccCCCc------hhHHHHHhhCCceeecc
Q 010940 367 IGGFLTHCGW------NSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 367 ~~~~I~HgG~------gt~~eal~~GvP~v~iP 393 (497)
.+++++|.|- +.+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 3348888885 47899999999999996
No 318
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=34.72 E-value=50 Score=30.73 Aligned_cols=42 Identities=7% Similarity=0.008 Sum_probs=31.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCcchhh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~~~~~~~ 53 (497)
|++--.++.+=+.=.+.|.+.|+++ ||+|.++.++.-...+.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~ 45 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVR 45 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHh
Confidence 4444444444447899999999999 99999999886555444
No 319
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=34.69 E-value=46 Score=33.63 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhh
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNI 54 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (497)
.+||++.-.++.+= .-.+.+.+.|++.|++|.++.++.-...+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 45888877776665 5589999999999999999998865555543
No 320
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=34.58 E-value=1.8e+02 Score=26.83 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=34.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (497)
-+++.-.++.|-..-...++....++|..|.|++.+...+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 356667789999999999988887899999999987655433
No 321
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=34.56 E-value=60 Score=28.59 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCCCcEEEeCCCCcc--hHHHHHHcCCCeEEEc
Q 010940 108 QPFEQLFDKLHPRPSCIISGKNLPW--TVNSAIKFKIPTILFD 148 (497)
Q Consensus 108 ~~l~~ll~~~~~~pDlvI~D~~~~~--~~~~A~~lgiP~v~~~ 148 (497)
..++++++- +||+||+...... ....-++.|||++.+.
T Consensus 60 ~n~E~ll~l---~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVAL---KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhcc---CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 346777653 9999998654322 3334578999998864
No 322
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=34.35 E-value=3e+02 Score=23.67 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=79.7
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCcc
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIG 368 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~ 368 (497)
.|-|=+||.. +-+..+...+.|+.++..+-..+-+-++ .|+.+. +|.- -.....++
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAHR--------TPe~m~-----------~ya~---~a~~~g~~ 59 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAHR--------TPEKMF-----------EYAE---EAEERGVK 59 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEeccC--------CHHHHH-----------HHHH---HHHHCCCe
Confidence 4667788875 5566777888899999877666555554 453221 1111 11234455
Q ss_pred ccccCCCch----hHHHHHhhCCceeeccccccc---cchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHH
Q 010940 369 GFLTHCGWN----STLEGVSAGVPLVTCPLFAEQ---FYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEA 441 (497)
Q Consensus 369 ~~I~HgG~g----t~~eal~~GvP~v~iP~~~DQ---~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 441 (497)
++|.-.|.- ++. |..-=+|++.+|.-..- .+----+++ .--|+-+..-. +.. ..+..-|...
T Consensus 60 viIAgAGgAAHLPGmv-Aa~T~lPViGVPv~s~~L~GlDSL~SiVQ-MP~GvPVaTva-----Ig~----a~NAallAa~ 128 (162)
T COG0041 60 VIIAGAGGAAHLPGMV-AAKTPLPVIGVPVQSKALSGLDSLLSIVQ-MPAGVPVATVA-----IGN----AANAALLAAQ 128 (162)
T ss_pred EEEecCcchhhcchhh-hhcCCCCeEeccCccccccchHHHHHHhc-CCCCCeeEEEe-----ecc----hhhHHHHHHH
Confidence 577655531 222 33447899999986321 122223324 45554332211 000 1344444444
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHHHHhcc
Q 010940 442 IEKLMDRGKQGEKRRKRARQLGEIANRAIGV 472 (497)
Q Consensus 442 i~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~ 472 (497)
|-. +.| +.++++..++++..++.+.+
T Consensus 129 ILa-~~d----~~l~~kl~~~r~~~~~~V~~ 154 (162)
T COG0041 129 ILA-IKD----PELAEKLAEFREAQTEEVLE 154 (162)
T ss_pred HHc-CCC----HHHHHHHHHHHHHHHHHHHh
Confidence 432 344 89999999999999877554
No 323
>PRK06270 homoserine dehydrogenase; Provisional
Probab=33.95 E-value=2.2e+02 Score=28.18 Aligned_cols=159 Identities=8% Similarity=0.065 Sum_probs=0.0
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhC----------CCCEEEEEeCC----CCCCCccccccchhHHHHhCCCCeEec
Q 010940 288 SVIYACLGSICGLATWQLLELGLGLEAS----------SQPFIWVIRGG----ERSQGLEKWIQEEGFEERTTGRGFIIR 353 (497)
Q Consensus 288 ~~V~vs~GS~~~~~~~~~~~~~~al~~~----------~~~~i~~~~~~----~~~~~~~~~~lp~~~~~~~~~~nv~v~ 353 (497)
.+..+.+|++. ..+++.+... +..++-.+... ...+ +..+-.......+-.+.
T Consensus 4 ~V~IiG~G~VG-------~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~G------i~~~~~~~~~~~~~~~~ 70 (341)
T PRK06270 4 KIALIGFGGVG-------QGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDG------LDLELALKVKEETGKLA 70 (341)
T ss_pred EEEEECCCHHH-------HHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCC------CCHHHHHHHHhccCCcc
Q ss_pred ccc------chHHhhhcCCcccccc------CCC---chhHHHHHhhCCceee---ccccccccchHHHHHHHHcceEEe
Q 010940 354 GWA------PQVLLLSHRAIGGFLT------HCG---WNSTLEGVSAGVPLVT---CPLFAEQFYNEKLAVQVLGIGVSV 415 (497)
Q Consensus 354 ~~~------pq~~lL~~~~~~~~I~------HgG---~gt~~eal~~GvP~v~---iP~~~DQ~~na~~~~~~~G~G~~l 415 (497)
.+- .-.++|..+++.++|- |+| .--+.+|+.+|+++|+ -|+...-....+.. ++.|+.+..
T Consensus 71 ~~~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A-~~~g~~~~~ 149 (341)
T PRK06270 71 DYPEGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA-KKNGVRFRY 149 (341)
T ss_pred cCccccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH-HHcCCEEEE
Q ss_pred ccccccccccccccccccCHHHHHHHHHHHHcCCchhH--------------HHHHHHHHHHHHHHHHhccC
Q 010940 416 GIEAAVTWGLEDKSGLVIKREKVKEAIEKLMDRGKQGE--------------KRRKRARQLGEIANRAIGVG 473 (497)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~~~~~~~--------------~~~~~a~~~~~~~~~a~~~g 473 (497)
...- ...-=+.+.+++.+..++-+. .|.+.-..+.+.+++|-+.|
T Consensus 150 ea~v-------------~~glPii~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~g~~f~~al~~Aq~~G 208 (341)
T PRK06270 150 EATV-------------GGAMPIINLAKETLAGNDIKSIKGILNGTTNYILTRMEEEGLSYEQALAEAQELG 208 (341)
T ss_pred eeee-------------eechhHHHHHHhhcccCceEEEEEEEeCcHHHHHHHHhhcCCCHHHHHHHHHHcC
No 324
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=33.90 E-value=2.9e+02 Score=30.12 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
++||+++..---=.+.-+-.....|+++||+|.++.
T Consensus 369 ~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv~ 404 (652)
T PRK02122 369 PKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVAY 404 (652)
T ss_pred CceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEEE
Confidence 466655544322245555556688999999999864
No 325
>PRK04328 hypothetical protein; Provisional
Probab=33.87 E-value=4e+02 Score=24.88 Aligned_cols=44 Identities=11% Similarity=-0.094 Sum_probs=34.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNI 54 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (497)
-+++.-.|+.|-..-.+.++.+-.++|+.+.|++.+...+.+.+
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 45667778899988888888776788999999998776655443
No 326
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=33.77 E-value=1.8e+02 Score=31.31 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=23.1
Q ss_pred CccccccCCCc------hhHHHHHhhCCceeecc
Q 010940 366 AIGGFLTHCGW------NSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 366 ~~~~~I~HgG~------gt~~eal~~GvP~v~iP 393 (497)
..+++++|.|- +.+.+|...++|+|+|.
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34558999885 47889999999999996
No 327
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=33.72 E-value=2.8e+02 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=27.1
Q ss_pred CcEEEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 9 QLHFVLIP-LMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 9 ~~~il~~~-~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
.++|+++- .|..|. .+|..|+++||+|++....
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 47899986 677775 6899999999999999854
No 328
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=33.48 E-value=2e+02 Score=25.95 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=30.9
Q ss_pred EEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 13 VLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 13 l~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
+++.....|-..-+|.-++....+|-.|.++.+.-.
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 555666789999999999999999999999998743
No 329
>PRK07236 hypothetical protein; Provisional
Probab=33.37 E-value=77 Score=31.81 Aligned_cols=38 Identities=21% Similarity=0.092 Sum_probs=30.2
Q ss_pred CCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 1 MASPLPAHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 1 m~~~~~~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|.+ |++++|+|+-.+- --+.+|..|+++|++|+++-..
T Consensus 1 ~~~---~~~~~ViIVGaG~-----aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 1 MTH---MSGPRAVVIGGSL-----GGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCC---CCCCeEEEECCCH-----HHHHHHHHHHhCCCCEEEEecC
Confidence 555 5678999987763 4489999999999999998743
No 330
>PRK13236 nitrogenase reductase; Reviewed
Probab=33.33 E-value=81 Score=30.49 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=31.1
Q ss_pred CCcEEEEE-cCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 8 HQLHFVLI-PLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 8 ~~~~il~~-~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+.+|++-+ .=++.|=..-.+.||..|+++|++|.++=..
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 34566544 3378899999999999999999999998443
No 331
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.21 E-value=2.9e+02 Score=23.05 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
++||++...+.-+|-.----++..|...|++|.......
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~ 40 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQ 40 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 679999999999999999999999999999999987653
No 332
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=33.20 E-value=2.9e+02 Score=30.34 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=29.4
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 11 HFVLIPLM-SPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 11 ~il~~~~p-~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
.|.+.+.. ..|=..-.+.|++.|.++|.+|.++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 57777554 578889999999999999999999764
No 333
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=33.20 E-value=3.5e+02 Score=24.11 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=32.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
+.++-.|+.|=..-.+.++..+.+.|..|.|+..+.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 466677899999999999999999999999999985
No 334
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=33.11 E-value=62 Score=32.34 Aligned_cols=91 Identities=22% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccc-----hhHHHHhCCCCeEeccccchHH---hhhcCCc
Q 010940 296 SICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQE-----EGFEERTTGRGFIIRGWAPQVL---LLSHRAI 367 (497)
Q Consensus 296 S~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp-----~~~~~~~~~~nv~v~~~~pq~~---lL~~~~~ 367 (497)
|........+..++++++..+.++.+.+..+........+ ++ .+-......=.+.+.+|+||.+ +|-.+++
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~-~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~ 266 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAW-LGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF 266 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHH-hccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc
Q ss_pred cccccCCCchhHHHHHhhCCcee
Q 010940 368 GGFLTHCGWNSTLEGVSAGVPLV 390 (497)
Q Consensus 368 ~~~I~HgG~gt~~eal~~GvP~v 390 (497)
-+-. |=-|+..|..+|+|.|
T Consensus 267 --NfVR-GEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 267 --NFVR-GEDSFVRAQWAGKPFV 286 (374)
T ss_pred --ceEe-cchHHHHHHHhCCCce
No 335
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=33.04 E-value=56 Score=33.18 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=37.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
++.+||++.-.++. ...=...+.+.|+++|++|.++.++.-...+...
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHH
Confidence 35678888877776 4557799999999999999999988655555433
No 336
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=32.76 E-value=78 Score=28.29 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCCcEEEeCCCC-cchHHHHHHcCCCeEEEccc
Q 010940 108 QPFEQLFDKLHPRPSCIISGKNL-PWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 108 ~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 150 (497)
..+++++++...+..++|...+- +++..+|+++++|.|++.|+
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 44566666662222366666543 46667899999999998776
No 337
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.64 E-value=3.6e+02 Score=29.92 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Q 010940 8 HQLHFVLIPL--MSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTT 50 (497)
Q Consensus 8 ~~~~il~~~~--p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (497)
++.|++++++ |+.|=..-.+.||..|+..|++|.++=......
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~ 573 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRG 573 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 3556666655 577888999999999999999999997654433
No 338
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=32.57 E-value=3.1e+02 Score=25.85 Aligned_cols=88 Identities=15% Similarity=0.173 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHHHHH
Q 010940 23 LIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNFFHA 102 (497)
Q Consensus 23 i~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (497)
..-+..|++.|.++|++|.+++.+...+..+..... ++ .........
T Consensus 139 ~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~------------~~--------~~~~~~~~~------------- 185 (279)
T cd03789 139 AERFAALADRLLARGARVVLTGGPAERELAEEIAAA------------LG--------GPRVVNLAG------------- 185 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHh------------cC--------CCccccCcC-------------
Confidence 456889999999999999988877654444333110 00 000000000
Q ss_pred HHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 103 ASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 103 ~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
.....++..+++ +-|++|+-. .+...+|..+|+|++.++..
T Consensus 186 -~~~l~e~~~li~----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 186 -KTSLRELAALLA----RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred -CCCHHHHHHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 001123445554 569999765 47777899999999998764
No 339
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=32.56 E-value=72 Score=30.15 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=31.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|.|+++.=++.|-..-...||..|+++|++|.++=..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3577776689999999999999999999999987444
No 340
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.43 E-value=58 Score=33.37 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEc
Q 010940 108 QPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 108 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 148 (497)
..+.+++++. +||++|.... ...+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~--~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRL--KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHh--CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 3466777777 9999999875 5668999999997654
No 341
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.42 E-value=3.9e+02 Score=24.30 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred CCcEEEeCCCCcchHHHHHHcCCCeEE
Q 010940 120 RPSCIISGKNLPWTVNSAIKFKIPTIL 146 (497)
Q Consensus 120 ~pDlvI~D~~~~~~~~~A~~lgiP~v~ 146 (497)
+.+.+|+=.+..-....|++.|+|++.
T Consensus 80 GA~FivsP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 80 GAQFIVSPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred CCCEEECCCCCHHHHHHHHHcCCcEEC
Confidence 778887777766777778888888765
No 342
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=31.79 E-value=68 Score=27.74 Aligned_cols=34 Identities=26% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+..+|+++-.+..| ...++.|.+.||+|+++.++
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 45788887666544 78899999999999999644
No 343
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=31.76 E-value=55 Score=31.48 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=25.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
|||+++-.+..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 368887777666 5688899999999999986
No 344
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=31.64 E-value=63 Score=32.15 Aligned_cols=96 Identities=9% Similarity=0.090 Sum_probs=53.3
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccch-hHHHH-hCCCCeEec-cc----------
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEE-GFEER-TTGRGFIIR-GW---------- 355 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~-~~~~~-~~~~nv~v~-~~---------- 355 (497)
+++.+.||-....+.. .+++.|++.++.+.|......-...+ +|. ++.-. .....+.-. .|
T Consensus 4 i~~~~GGTGGHi~Pal--a~a~~l~~~g~~v~~vg~~~~~e~~l----~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 77 (352)
T PRK12446 4 IVFTGGGSAGHVTPNL--AIIPYLKEDNWDISYIGSHQGIEKTI----IEKENIPYYSISSGKLRRYFDLKNIKDPFLVM 77 (352)
T ss_pred EEEEcCCcHHHHHHHH--HHHHHHHhCCCEEEEEECCCcccccc----CcccCCcEEEEeccCcCCCchHHHHHHHHHHH
Confidence 7777778777644433 35677777788999987554432211 221 11100 000000000 00
Q ss_pred ---cchHHhhhc--CCccccccCCCchh---HHHHHhhCCceeec
Q 010940 356 ---APQVLLLSH--RAIGGFLTHCGWNS---TLEGVSAGVPLVTC 392 (497)
Q Consensus 356 ---~pq~~lL~~--~~~~~~I~HgG~gt---~~eal~~GvP~v~i 392 (497)
+--..++.+ |++ +|++||.-| ...|...|+|.++.
T Consensus 78 ~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 78 KGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 001123444 555 999999986 88999999999874
No 345
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=31.45 E-value=84 Score=30.30 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=33.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
|+|+++-=|+.|=..-.+.||..|+++|++|.++=..+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 46888888999999999999999999999999985443
No 346
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=31.31 E-value=1.1e+02 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=33.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
||++..-++.|=......|++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999988775
No 347
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=31.27 E-value=91 Score=30.10 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCcc-C---HHHHHHHHHHHHHCCCeEEEEe
Q 010940 8 HQLHFVLIPLMSPG-H---LIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 8 ~~~~il~~~~p~~G-H---i~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
+++||+++..+..+ | +...-.++++|.+.||+|.++.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 47799888876443 2 4556678999999999998774
No 348
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.16 E-value=5.4e+02 Score=25.61 Aligned_cols=127 Identities=13% Similarity=-0.013 Sum_probs=79.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENM 87 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~ 87 (497)
++.|++++.-+-.||--.+.-=|..|++.|.+|.+++--.....-+-. ..++|+++.++....-+..
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~------~hprI~ih~m~~l~~~~~~------- 77 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL------NHPRIRIHGMPNLPFLQGG------- 77 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh------cCCceEEEeCCCCcccCCC-------
Confidence 478999999999999999999999999999999999855433322211 3558999999743111111
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCC-CCcchHHH----HHHcCCCeEEEccchHHH
Q 010940 88 DKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGK-NLPWTVNS----AIKFKIPTILFDGMGCFA 154 (497)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~-~~~~~~~~----A~~lgiP~v~~~~~~~~~ 154 (497)
...+....+..-.+...+..++.-. ++|.+++-. -......+ ....|-..+.=|....++
T Consensus 78 -----p~~~~l~lKvf~Qfl~Ll~aL~~~~--~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 78 -----PRVLFLPLKVFWQFLSLLWALFVLR--PPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred -----chhhhhHHHHHHHHHHHHHHHHhcc--CCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1112223333333444455555444 889988655 22222222 344588888878776665
No 349
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=30.93 E-value=62 Score=33.09 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 5 LPAHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 5 ~~~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
..++++||+++-.+..| +..|+.|...+++||++.+..+
T Consensus 6 ~~~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 6 ARLKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred cCCCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 34678899998776555 4568888777899999987643
No 350
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=30.84 E-value=86 Score=30.29 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=30.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+|.|+.-|+.|=..-...||..|++.|++|.++-..
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 455666688999999999999999999999999544
No 351
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=30.68 E-value=60 Score=23.43 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 010940 26 MIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
-+..|..|+++|++|+++-...
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 3678999999999999997553
No 352
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=30.62 E-value=1.3e+02 Score=31.27 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchh
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (497)
+++.-.|+.|=..-++.++..+.++|+.|.|++.+...+.+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 46666689999999999999999999999999988655443
No 353
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=30.58 E-value=58 Score=29.66 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=31.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|.+..+|+.|-....-.||++|.+++|+|..++..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 56677799999999999999999999999887754
No 354
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=30.51 E-value=3.4e+02 Score=29.15 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=36.1
Q ss_pred HHhhHHHHHHHhhcCCCCcEEE----eCCCCcchHHHHHHcCCCeEEEccch
Q 010940 104 SMLKQPFEQLFDKLHPRPSCII----SGKNLPWTVNSAIKFKIPTILFDGMG 151 (497)
Q Consensus 104 ~~~~~~l~~ll~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~ 151 (497)
+.....++..++.. .+|-+| ||-..+.....|-.++||.+.+.-.+
T Consensus 97 elIAdsiE~~~~a~--~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGp 146 (615)
T PRK12448 97 ELIADSVEYMVNAH--CADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGP 146 (615)
T ss_pred HHHHHHHHHHhhCC--CcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCC
Confidence 34556677788777 999988 67777888888999999999886554
No 355
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=30.38 E-value=1.6e+02 Score=31.53 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=22.3
Q ss_pred ccccccCCCch------hHHHHHhhCCceeecc
Q 010940 367 IGGFLTHCGWN------STLEGVSAGVPLVTCP 393 (497)
Q Consensus 367 ~~~~I~HgG~g------t~~eal~~GvP~v~iP 393 (497)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44488898865 6889999999999995
No 356
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=30.26 E-value=4.7e+02 Score=27.66 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=36.1
Q ss_pred HHhhHHHHHHHhhcCCCCcEEE----eCCCCcchHHHHHHcCCCeEEEccch
Q 010940 104 SMLKQPFEQLFDKLHPRPSCII----SGKNLPWTVNSAIKFKIPTILFDGMG 151 (497)
Q Consensus 104 ~~~~~~l~~ll~~~~~~pDlvI----~D~~~~~~~~~A~~lgiP~v~~~~~~ 151 (497)
+.....++..++.. .+|.+| ||-..+.....|-.++||.+.+.-.+
T Consensus 75 elIAdsiE~~~~~~--~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 75 EIIADSVETMVNAH--RFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred HHHHHHHHHHHhcC--CcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 44456677777777 999988 77777888888999999999886554
No 357
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=30.00 E-value=1.1e+02 Score=26.59 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=21.3
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCC
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASS 316 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~ 316 (497)
.||+++||........+...++.|+..+
T Consensus 9 ~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 9 LAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred EEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 7999999998656666777777776643
No 358
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=29.67 E-value=1.1e+02 Score=30.16 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 108 QPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 108 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
.++..+++ +-|++|+.. ++...+|..+|+|+|.++..
T Consensus 254 ~el~ali~----~a~l~v~nD--SGp~HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 254 PELGALID----HAQLFIGVD--SAPAHIAAAVNTPLICLFGA 290 (352)
T ss_pred HHHHHHHH----hCCEEEecC--CHHHHHHHHcCCCEEEEECC
Confidence 34455555 569999876 67888999999999998753
No 359
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=29.66 E-value=1.5e+02 Score=28.56 Aligned_cols=93 Identities=14% Similarity=0.005 Sum_probs=51.2
Q ss_pred chhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEecc
Q 010940 275 EQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRG 354 (497)
Q Consensus 275 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~ 354 (497)
.++.++.....-+++-+-........+...+..+.+++++++..+++-+|....... +. . .....
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~-----~~---------~-~~~~p 180 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAG-----LE---------K-GHSDP 180 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcc-----cc---------c-CCCCc
Confidence 455555554322222222223333344555778999999999999996665432110 00 0 00111
Q ss_pred ccchHHhhhcCCccccccCCC--chhHHHH
Q 010940 355 WAPQVLLLSHRAIGGFLTHCG--WNSTLEG 382 (497)
Q Consensus 355 ~~pq~~lL~~~~~~~~I~HgG--~gt~~ea 382 (497)
+.=.+.+..+|+++.++.|+| ..=..|+
T Consensus 181 ~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 181 LYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred hHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 112455667789999999999 5444444
No 360
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=29.64 E-value=55 Score=33.87 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=25.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+||+|+--+-.| |+-|.+|+++||+||++-..
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEecc
Confidence 467776666444 88999999999999998655
No 361
>PRK06932 glycerate dehydrogenase; Provisional
Probab=29.52 E-value=2.1e+02 Score=27.98 Aligned_cols=101 Identities=15% Similarity=0.219 Sum_probs=60.7
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCC
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRA 366 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~ 366 (497)
+.+..|.+|.+. +.+.+-++.++.+++.. ..... . .. ...+.+-+++|+.++
T Consensus 148 ktvgIiG~G~IG-------~~va~~l~~fg~~V~~~-~~~~~----------~---------~~-~~~~~~l~ell~~sD 199 (314)
T PRK06932 148 STLGVFGKGCLG-------TEVGRLAQALGMKVLYA-EHKGA----------S---------VC-REGYTPFEEVLKQAD 199 (314)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEEE-CCCcc----------c---------cc-ccccCCHHHHHHhCC
Confidence 348899999887 55666677788887643 21100 0 00 123567788999999
Q ss_pred ccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcce-EEeccccccccccccccccccCHHHHHHHHHH
Q 010940 367 IGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIG-VSVGIEAAVTWGLEDKSGLVIKREKVKEAIEK 444 (497)
Q Consensus 367 ~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G-~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ 444 (497)
+ ++.|+-.+.-. ....|+..+ +.++=| +-++..+ +..+++++|.+|++.
T Consensus 200 i--v~l~~Plt~~T----------------~~li~~~~l-~~mk~ga~lIN~aR----------G~~Vde~AL~~aL~~ 249 (314)
T PRK06932 200 I--VTLHCPLTETT----------------QNLINAETL-ALMKPTAFLINTGR----------GPLVDEQALLDALEN 249 (314)
T ss_pred E--EEEcCCCChHH----------------hcccCHHHH-HhCCCCeEEEECCC----------ccccCHHHHHHHHHc
Confidence 8 87776543221 245677777 336544 3334433 335777777777764
No 362
>PRK07454 short chain dehydrogenase; Provisional
Probab=29.35 E-value=1.1e+02 Score=28.11 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+++.++++. +.|. --..|++.|.++|++|+++.-.
T Consensus 5 ~~k~vlItG-~sg~--iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITG-ASSG--IGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeC-CCch--HHHHHHHHHHHCCCEEEEEeCC
Confidence 445555544 3443 3567899999999999988743
No 363
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=29.25 E-value=74 Score=33.54 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEc
Q 010940 109 PFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 109 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 148 (497)
.+++++++. +||+||.+. ....+|+++|||++.++
T Consensus 365 ei~~~I~~~--~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARV--EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhc--CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 456677777 999999997 34556899999998866
No 364
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=29.19 E-value=82 Score=33.30 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEc
Q 010940 109 PFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 109 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 148 (497)
.+++.+++. +||+||.+. ....+|+++|||++.++
T Consensus 353 el~~~i~~~--~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA--APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc--CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 456666776 999999886 44668999999998765
No 365
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=29.18 E-value=2.5e+02 Score=28.80 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.0
Q ss_pred ccccccCCCc------hhHHHHHhhCCceeecc
Q 010940 367 IGGFLTHCGW------NSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 367 ~~~~I~HgG~------gt~~eal~~GvP~v~iP 393 (497)
.+++++|+|- +.+.+|...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 4448888885 48889999999999993
No 366
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=29.15 E-value=2.5e+02 Score=28.30 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=51.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMD 88 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~ 88 (497)
.+++++. |+-.-.+.|++.|.+-|-+|..+......+.-........... ...+. .
T Consensus 271 g~~v~i~-----~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~-~~~v~-~----------------- 326 (398)
T PF00148_consen 271 GKRVAIY-----GDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEES-DPEVI-I----------------- 326 (398)
T ss_dssp T-EEEEE-----SSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTT-CSEEE-E-----------------
T ss_pred CceEEEE-----cCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCC-CcEEE-e-----------------
Confidence 3567763 3346677889999999999888876654332221100000000 00000 0
Q ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEc
Q 010940 89 KLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 148 (497)
..-...+++++++. +||++|.+.. ...+|+++++|.+...
T Consensus 327 ---------------~~~~~~~~~~l~~~--~pdl~ig~~~---~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 327 ---------------DPDPEEIEELLEEL--KPDLLIGSSH---ERYLAKKLGIPLIRIG 366 (398)
T ss_dssp ---------------SCBHHHHHHHHHHH--T-SEEEESHH---HHHHHHHTT--EEE-S
T ss_pred ---------------CCCHHHHHHHHHhc--CCCEEEechh---hHHHHHHhCCCeEEEe
Confidence 01123466667777 9999999963 6778999999988744
No 367
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=29.11 E-value=90 Score=29.47 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
|+|++..=|+.|=..-.+.||..|+++|++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 36777766888999999999999999999999884
No 368
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=29.06 E-value=1.4e+02 Score=27.58 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCCccC----HHHHHHHHHHHHHCCCeEEEEeCCCCc--chhhhhHhhhhhcCCCee--EEEeeCCCccCC
Q 010940 8 HQLHFVLIPLMSPGH----LIPMIDMARLLAEHGIKVTIVTTPLNT--TRFNITIKRAVESGLSIQ--LLQLEFPSVESG 79 (497)
Q Consensus 8 ~~~~il~~~~p~~GH----i~P~l~LA~~L~~rGH~Vt~~~~~~~~--~~~~~~~~~~~~~~~~i~--f~~i~~~~~~~~ 79 (497)
++..|+|.+..+... ..-+..|++.|.++|.+|.++.++... +.++.... +.. +..+.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~-------~~~~~~~~~~------- 169 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA-------GLQNPVINLA------- 169 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT-------THTTTTEEET-------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH-------hcccceEeec-------
Confidence 345677776654421 233689999999999889888877552 22211110 110 11110
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccch
Q 010940 80 LPQGCENMDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGMG 151 (497)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 151 (497)
.. ....++..+++ ..|++|+.. .+...+|..+|+|++.++...
T Consensus 170 ---------~~--------------~~l~e~~ali~----~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 170 ---------GK--------------TSLRELAALIS----RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp ---------TT--------------S-HHHHHHHHH----TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred ---------CC--------------CCHHHHHHHHh----cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 00 01122444554 669999765 578889999999999987654
No 369
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.97 E-value=69 Score=30.55 Aligned_cols=50 Identities=24% Similarity=0.143 Sum_probs=35.4
Q ss_pred CeEeccccchHH---hhhcCCccccccCCCchhHHHHHhhCCceeeccccccccchHH
Q 010940 349 GFIIRGWAPQVL---LLSHRAIGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEK 403 (497)
Q Consensus 349 nv~v~~~~pq~~---lL~~~~~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~ 403 (497)
.+.+.+|+||++ +|--|++ -+-. |--|+..|..+|+|.+= ++.-|..|+.
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflW--HIYpQdentH 291 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLW--HIYPQDENTH 291 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEE--EecCCccccH
Confidence 366678999754 7877776 3334 66799999999999763 3455666653
No 370
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=28.93 E-value=1e+02 Score=31.26 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=31.2
Q ss_pred HHHhhHHHHHHHhhcCCCCcEEEeCCCCcch------H----HHHHHcCCCeEEEc
Q 010940 103 ASMLKQPFEQLFDKLHPRPSCIISGKNLPWT------V----NSAIKFKIPTILFD 148 (497)
Q Consensus 103 ~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~------~----~~A~~lgiP~v~~~ 148 (497)
.+.....+.+++++. +||++|+.+-+.++ . .+.++++||.++-.
T Consensus 61 ~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 61 LEEAVARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 345556677888888 99999999854322 1 13567999999844
No 371
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=28.87 E-value=1e+02 Score=31.27 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=31.2
Q ss_pred HHHhhHHHHHHHhhcCCCCcEEEeCCCCcch------H----HHHHHcCCCeEEEc
Q 010940 103 ASMLKQPFEQLFDKLHPRPSCIISGKNLPWT------V----NSAIKFKIPTILFD 148 (497)
Q Consensus 103 ~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~------~----~~A~~lgiP~v~~~ 148 (497)
.+.....+.+++++. +||++|+.+-+.++ . .+.++++||.++-.
T Consensus 61 ~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 355556678888888 99999999854322 1 13567999999854
No 372
>PRK09739 hypothetical protein; Provisional
Probab=28.73 E-value=1.4e+02 Score=26.86 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=21.3
Q ss_pred CcEEEEEcC-CCccC-H-HHHHHHHHHHHHCCCeEEEEe
Q 010940 9 QLHFVLIPL-MSPGH-L-IPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 9 ~~~il~~~~-p~~GH-i-~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
++||+++.. |-.+- . .-.-.+++.|.++||+|+++-
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 457766644 43322 1 123445667777899998765
No 373
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=28.68 E-value=92 Score=28.20 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
+++|.+=..|+.|-.+-||.=|.+|+++|.+|.+..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 6889999999999999999999999999999999776543
No 374
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.67 E-value=81 Score=32.36 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=27.5
Q ss_pred HHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 110 FEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 110 l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
+++++++. +||++|.+.. ...+|+++|+|++.++..
T Consensus 362 ~~~~i~~~--~pdliig~~~---~~~~a~~~gip~~~~~~p 397 (430)
T cd01981 362 VGDMIART--EPELIFGTQM---ERHIGKRLDIPCAVISAP 397 (430)
T ss_pred HHHHHHhh--CCCEEEecch---hhHHHHHcCCCEEEEeCC
Confidence 55666776 9999999973 345789999999886543
No 375
>PRK07060 short chain dehydrogenase; Provisional
Probab=28.59 E-value=1.2e+02 Score=27.84 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=27.1
Q ss_pred CCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 1 MASPLPAHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 1 m~~~~~~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|-.++.++.+++++ .++.|.+ -..+++.|+++||+|+++...
T Consensus 1 ~~~~~~~~~~~~lI--tGa~g~i--G~~~a~~l~~~g~~V~~~~r~ 42 (245)
T PRK07060 1 MNMAFDFSGKSVLV--TGASSGI--GRACAVALAQRGARVVAAARN 42 (245)
T ss_pred CCcccccCCCEEEE--eCCcchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 34444455566666 3444444 456688999999999887743
No 376
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=28.52 E-value=82 Score=33.22 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEcc
Q 010940 109 PFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDG 149 (497)
Q Consensus 109 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~ 149 (497)
.+++.+++. +||+||.+. ....+|+++|||++.++.
T Consensus 355 ei~~~i~~~--~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAAL--EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhc--CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 455666666 999999997 456679999999987654
No 377
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=28.39 E-value=83 Score=33.18 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=25.5
Q ss_pred HHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEc
Q 010940 110 FEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 110 l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 148 (497)
+++++... +||++|.+. .+..+|+++|||.+.+.
T Consensus 429 l~~~l~~~--~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 429 LRSLVFTE--PVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHhhc--CCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 34444455 899999886 35678999999998855
No 378
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=28.39 E-value=1.7e+02 Score=28.71 Aligned_cols=66 Identities=11% Similarity=0.074 Sum_probs=39.5
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHH-hCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcC
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGLE-ASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHR 365 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al~-~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~ 365 (497)
+.+-.|.+|++. +.+.+-++ .++.+++.. ..... +... ...++ .+.+-+++|+.+
T Consensus 146 ktvGIiG~G~IG-------~~va~~l~~~fgm~V~~~-~~~~~----------~~~~---~~~~~---~~~~l~ell~~s 201 (323)
T PRK15409 146 KTLGIVGMGRIG-------MALAQRAHFGFNMPILYN-ARRHH----------KEAE---ERFNA---RYCDLDTLLQES 201 (323)
T ss_pred CEEEEEcccHHH-------HHHHHHHHhcCCCEEEEE-CCCCc----------hhhH---HhcCc---EecCHHHHHHhC
Confidence 337899999987 45556565 678887643 22111 1000 00122 355778899999
Q ss_pred CccccccCCCchh
Q 010940 366 AIGGFLTHCGWNS 378 (497)
Q Consensus 366 ~~~~~I~HgG~gt 378 (497)
++ ++.|+-.+.
T Consensus 202 Dv--v~lh~plt~ 212 (323)
T PRK15409 202 DF--VCIILPLTD 212 (323)
T ss_pred CE--EEEeCCCCh
Confidence 98 888876543
No 379
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=28.38 E-value=1.6e+02 Score=26.34 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEe
Q 010940 23 LIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQL 71 (497)
Q Consensus 23 i~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i 71 (497)
-.-++.||+.|.+.|+++. ++......++.. |+.+..+
T Consensus 10 K~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~---------GI~v~~V 47 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL--STGGTAKFLKEA---------GIPVTDV 47 (187)
T ss_pred cccHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCeEEEh
Confidence 4557899999999999984 555565555554 6776655
No 380
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=28.35 E-value=2.7e+02 Score=26.84 Aligned_cols=107 Identities=7% Similarity=-0.041 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe-CCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT-TPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCEN 86 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~ 86 (497)
+++||+++.++..+.+.-++.-.+.=.-...=+.+++ .+.....+++. |+.+..++
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~-------------- 144 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH---------GIPFHHFP-------------- 144 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHh---------CCCEEEeC--------------
Q ss_pred CCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC-cchHHHHHHcCCCeEEEccc
Q 010940 87 MDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL-PWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 150 (497)
.-..........+.+++++. ++|++|.-.+. .....+-....-..+.+.++
T Consensus 145 -----------~~~~~~~~~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 145 -----------ITPDTKPQQEAQVLDVVEES--GAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred -----------CCcCchhhhHHHHHHHHHHh--CcCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 381
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=28.28 E-value=1.1e+02 Score=28.46 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=26.9
Q ss_pred CCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 1 MASPLPAHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 1 m~~~~~~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|.+.|.++.+.++ ++. +.|.+ -..+|+.|.++|++|.++...
T Consensus 1 ~~~~~~l~~k~vl-ItG-~s~gI--G~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 1 MQDWLNLQGKIII-VTG-GSSGI--GLAIVKELLANGANVVNADIH 42 (266)
T ss_pred CcccccCCCCEEE-EeC-CCChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 5555555444444 443 33433 467899999999999987643
No 382
>PRK12827 short chain dehydrogenase; Provisional
Probab=28.25 E-value=1.1e+02 Score=28.09 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
.+++++ .++.|.+- ..||+.|.++||+|+++.
T Consensus 6 ~~~ilI--tGasg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 6 SRRVLI--TGGSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCEEEE--ECCCChHH--HHHHHHHHHCCCeEEEEc
Confidence 456665 45556664 588999999999998865
No 383
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=27.90 E-value=3.6e+02 Score=24.88 Aligned_cols=44 Identities=11% Similarity=-0.099 Sum_probs=35.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNI 54 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~ 54 (497)
-+++.-.|+.|-..-.+.++.+-.++|..|.|++.+...+.+..
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 46777788999999888888776688999999998876655443
No 384
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.82 E-value=88 Score=32.07 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEcc
Q 010940 108 QPFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDG 149 (497)
Q Consensus 108 ~~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~ 149 (497)
..+++++++. +||++|.+.. ...+|+++|+|++.++.
T Consensus 361 ~el~~~i~~~--~pdliig~~~---~~~~a~~~~ip~i~~~~ 397 (428)
T cd01965 361 WDLESLAKEE--PVDLLIGNSH---GRYLARDLGIPLVRVGF 397 (428)
T ss_pred HHHHHHhhcc--CCCEEEECch---hHHHHHhcCCCEEEecC
Confidence 3456667776 8999999974 36789999999987543
No 385
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.73 E-value=2.6e+02 Score=27.06 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=36.9
Q ss_pred cCCccccccCCCchhHHHHHhh----CCceeeccccccccchHHHHHHHHcceEEeccccccccccccccccccCHHHHH
Q 010940 364 HRAIGGFLTHCGWNSTLEGVSA----GVPLVTCPLFAEQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVK 439 (497)
Q Consensus 364 ~~~~~~~I~HgG~gt~~eal~~----GvP~v~iP~~~DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~ 439 (497)
.+++ +|+=||-||+.+++.. ++|++.+..- .+|- + .+ ++++++.
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------------~lGF-l--~~-------------~~~~~~~ 109 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------------RLGF-L--TD-------------IRPDELE 109 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------------cccc-c--cc-------------CCHHHHH
Confidence 3455 9999999999999753 6687777541 1221 1 12 6788899
Q ss_pred HHHHHHHcC
Q 010940 440 EAIEKLMDR 448 (497)
Q Consensus 440 ~ai~~vl~~ 448 (497)
++|.+++++
T Consensus 110 ~~l~~~~~g 118 (295)
T PRK01231 110 FKLAEVLDG 118 (295)
T ss_pred HHHHHHHcC
Confidence 999999873
No 386
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=27.73 E-value=3.7e+02 Score=24.85 Aligned_cols=150 Identities=5% Similarity=-0.053 Sum_probs=74.4
Q ss_pred cccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchH
Q 010940 280 WLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQV 359 (497)
Q Consensus 280 ~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~ 359 (497)
|+... .+.++.|..|..+. .=+..|.+.+..+.|+...- -+++..-....++....---+.
T Consensus 20 ~l~~~-~~~VLVVGGG~VA~-------RK~~~Ll~~gA~VtVVap~i-----------~~el~~l~~~~~i~~~~r~~~~ 80 (223)
T PRK05562 20 SLLSN-KIKVLIIGGGKAAF-------IKGKTFLKKGCYVYILSKKF-----------SKEFLDLKKYGNLKLIKGNYDK 80 (223)
T ss_pred EEECC-CCEEEEECCCHHHH-------HHHHHHHhCCCEEEEEcCCC-----------CHHHHHHHhCCCEEEEeCCCCh
Confidence 45443 23488887776652 12355666788877776532 1333322223344333211123
Q ss_pred HhhhcCCccccccCCCchhHHHHHhh-----CCceeeccccccccchHH-----HHHHHHcceEEecccccccccccccc
Q 010940 360 LLLSHRAIGGFLTHCGWNSTLEGVSA-----GVPLVTCPLFAEQFYNEK-----LAVQVLGIGVSVGIEAAVTWGLEDKS 429 (497)
Q Consensus 360 ~lL~~~~~~~~I~HgG~gt~~eal~~-----GvP~v~iP~~~DQ~~na~-----~~~~~~G~G~~l~~~~~~~~~~~~~~ 429 (497)
.-|..+.+ +|.--+--.+.+.++. |+++.+ .|++..+. .+ ++-++=+.+. ++|+
T Consensus 81 ~dl~g~~L--ViaATdD~~vN~~I~~~a~~~~~lvn~----vd~p~~~dFi~PAiv-~rg~l~IaIS---------T~G~ 144 (223)
T PRK05562 81 EFIKDKHL--IVIATDDEKLNNKIRKHCDRLYKLYID----CSDYKKGLCIIPYQR-STKNFVFALN---------TKGG 144 (223)
T ss_pred HHhCCCcE--EEECCCCHHHHHHHHHHHHHcCCeEEE----cCCcccCeEEeeeEE-ecCCEEEEEE---------CCCc
Confidence 33444444 6666666555554433 455443 34433332 22 2111222221 2232
Q ss_pred ccccCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q 010940 430 GLVIKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANR 468 (497)
Q Consensus 430 ~~~~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~ 468 (497)
++.++ ..|++.|.+++.+ ...+-+.+.++++.++.
T Consensus 145 sP~la-r~lR~~ie~~l~~---~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 145 SPKTS-VFIGEKVKNFLKK---YDDFIEYVTKIRNKAKK 179 (223)
T ss_pred CcHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 23333 5688888888843 45677777778777764
No 387
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=27.63 E-value=65 Score=21.20 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 010940 434 KREKVKEAIEKLMDRGKQGEKRRKRARQLG 463 (497)
Q Consensus 434 ~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~ 463 (497)
++++|..||..|..+ + -++++.|+++.
T Consensus 1 tee~l~~Ai~~v~~g-~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNG-K--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTT-S--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhC-C--CCHHHHHHHHC
Confidence 478899999999863 2 46676666653
No 388
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.57 E-value=1.4e+02 Score=28.87 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
.+++|.|+-.+..| .++|+.|.++||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 36789999888777 478999999999999887543
No 389
>PLN00016 RNA-binding protein; Provisional
Probab=27.50 E-value=74 Score=31.88 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=25.7
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 9 QLHFVLIPL--MSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 9 ~~~il~~~~--p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+++|+++.. ++.|.+- ..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 467888622 4445443 56789999999999998854
No 390
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.49 E-value=1.1e+02 Score=28.01 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+..+++++ ++.|.+- ..|++.|.++||+|+.+.-.
T Consensus 4 ~~~~vlIt--Gasg~iG--~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 4 EGKVAIVT--GASSGIG--EGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred CCcEEEEE--CCCChHH--HHHHHHHHHCCCEEEEEeCC
Confidence 34566663 5555544 68899999999998888644
No 391
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=27.45 E-value=3.7e+02 Score=26.25 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=38.8
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeE-eccccchHHhhhcCC
Q 010940 288 SVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFI-IRGWAPQVLLLSHRA 366 (497)
Q Consensus 288 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~-v~~~~pq~~lL~~~~ 366 (497)
.+..+.+|++. +.+.+-++.+|.+++.. ...... . +++. +.....-+++++.++
T Consensus 138 tvgIvG~G~IG-------~~vA~~l~afG~~V~~~-~~~~~~-------~----------~~~~~~~~~~~l~e~l~~aD 192 (312)
T PRK15469 138 TIGILGAGVLG-------SKVAQSLQTWGFPLRCW-SRSRKS-------W----------PGVQSFAGREELSAFLSQTR 192 (312)
T ss_pred EEEEECCCHHH-------HHHHHHHHHCCCEEEEE-eCCCCC-------C----------CCceeecccccHHHHHhcCC
Confidence 38889999987 55667777788876543 221110 0 1111 112234467888888
Q ss_pred ccccccCCCchhHH
Q 010940 367 IGGFLTHCGWNSTL 380 (497)
Q Consensus 367 ~~~~I~HgG~gt~~ 380 (497)
+ ++.|.-.+.-.
T Consensus 193 v--vv~~lPlt~~T 204 (312)
T PRK15469 193 V--LINLLPNTPET 204 (312)
T ss_pred E--EEECCCCCHHH
Confidence 7 88887655433
No 392
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=27.39 E-value=4.4e+02 Score=23.36 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCceeeccc----cccc---cchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHc
Q 010940 386 GVPLVTCPL----FAEQ---FYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMD 447 (497)
Q Consensus 386 GvP~v~iP~----~~DQ---~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 447 (497)
++|++++|- .... ..|..++ ++.|+=+.-.....-.-+ +.|.+.-.+.++|.+.|.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L-~~~G~~vi~p~~g~la~~-~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTL-KEDGVQEIEPKEGLLACG-DEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHH-HHCCCEEECCCCCccccC-CccCCCCCCHHHHHHHHHHHhc
Confidence 899999995 3333 3466777 436654433321100001 1112334678888888877764
No 393
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.37 E-value=1.6e+02 Score=23.88 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=31.1
Q ss_pred EcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 15 IPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 15 ~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
+.....|+...++.+++.++++|..|..++........+
T Consensus 58 i~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 58 IIISYSGETRELIELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp EEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred EeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 333477899999999999999999999999776655443
No 394
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.33 E-value=1.1e+02 Score=27.91 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|..++|+++ ++.|.+ -..|++.|.++||+|+.+...
T Consensus 3 ~~~~~ilIt--Gasg~i--G~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVT--GASRGI--GRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCCCEEEEE--CCCcHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 344566663 344544 367899999999998777644
No 395
>PLN02929 NADH kinase
Probab=27.31 E-value=71 Score=30.93 Aligned_cols=65 Identities=9% Similarity=0.140 Sum_probs=40.0
Q ss_pred cCCccccccCCCchhHHHHHh---hCCceeecccccc------ccchHHHHHHHHcceEEeccccccccccccccccccC
Q 010940 364 HRAIGGFLTHCGWNSTLEGVS---AGVPLVTCPLFAE------QFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIK 434 (497)
Q Consensus 364 ~~~~~~~I~HgG~gt~~eal~---~GvP~v~iP~~~D------Q~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~ 434 (497)
.+++ +|+-||-||++.|.. .++|++.|=.-.. +..+. ..+..-+|-.. .++
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~--~~~~r~lGfL~----------------~~~ 123 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDE--FDARRSTGHLC----------------AAT 123 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccc--cccccCccccc----------------cCC
Confidence 3455 999999999999855 4688887754211 11111 10101234221 166
Q ss_pred HHHHHHHHHHHHcC
Q 010940 435 REKVKEAIEKLMDR 448 (497)
Q Consensus 435 ~~~l~~ai~~vl~~ 448 (497)
.+++.++|.+++++
T Consensus 124 ~~~~~~~L~~il~g 137 (301)
T PLN02929 124 AEDFEQVLDDVLFG 137 (301)
T ss_pred HHHHHHHHHHHHcC
Confidence 78999999999974
No 396
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.27 E-value=2.8e+02 Score=28.01 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=35.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFN 53 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~ 53 (497)
-|+|+-.-+.|-..-.-.+|-.++++|+.+-+++.+-++.-+-
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAf 145 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAF 145 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchH
Confidence 3456666788999999999999999999999999887765433
No 397
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=27.21 E-value=1.3e+02 Score=25.33 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=29.3
Q ss_pred EEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 13 VLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 13 l~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
.++.++..--+.|..-++...+.+|++|+++.+-
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 3455678888999999999999999999998864
No 398
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=27.15 E-value=1.2e+02 Score=26.41 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
+..+|++++.++ -.=-=-+.+|+.|.++|++|+++.
T Consensus 24 ~~~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 24 KGPRVLILCGPG-NNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp TT-EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEEE
Confidence 467888888775 223346889999999999999943
No 399
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=27.06 E-value=1e+02 Score=30.88 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
.++++|+++ ++.|.+- ..|++.|.++||+|+.+.-
T Consensus 19 ~~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 19 SEKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEe
Confidence 357888884 6666654 5789999999999999873
No 400
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.02 E-value=1.2e+02 Score=28.27 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=28.8
Q ss_pred CCCCCCCCCcEEEEEcCCCcc-CHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 1 MASPLPAHQLHFVLIPLMSPG-HLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 1 m~~~~~~~~~~il~~~~p~~G-Hi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
|++.++++. |+++++..+.| - --.++|+.|+++|++|.+..-
T Consensus 2 ~~~~~~~~~-k~~lItGas~g~G--IG~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 2 MQPLLPLAG-KRGLVVGIANEQS--IAWGCARAFRALGAELAVTYL 44 (258)
T ss_pred CCcccccCC-CEEEEECCCCCCc--HHHHHHHHHHHcCCEEEEEeC
Confidence 666655544 56666665532 3 348899999999999987653
No 401
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=26.95 E-value=2e+02 Score=30.69 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=22.5
Q ss_pred ccccccCCCc------hhHHHHHhhCCceeecc
Q 010940 367 IGGFLTHCGW------NSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 367 ~~~~I~HgG~------gt~~eal~~GvP~v~iP 393 (497)
.+++++|.|- +.+++|...++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4458999885 48899999999999984
No 402
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.74 E-value=2.6e+02 Score=24.55 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=54.2
Q ss_pred EcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChh
Q 010940 15 IPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRD 94 (497)
Q Consensus 15 ~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~ 94 (497)
+++-..--.--..+-..+|+++|-.|++++. ....++.... ...++.|..-
T Consensus 40 v~wd~~~~tpe~~~W~~e~k~~gi~v~vvSN-n~e~RV~~~~-----~~l~v~fi~~----------------------- 90 (175)
T COG2179 40 VPWDNPDATPELRAWLAELKEAGIKVVVVSN-NKESRVARAA-----EKLGVPFIYR----------------------- 90 (175)
T ss_pred ecccCCCCCHHHHHHHHHHHhcCCEEEEEeC-CCHHHHHhhh-----hhcCCceeec-----------------------
Confidence 3343344444566778889999999999887 4455555431 2223444322
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcC--CCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 95 LIKNFFHAASMLKQPFEQLFDKLH--PRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~ll~~~~--~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
+..-+...+++.+++.. .+=-++|.|+++.- ...+...|+-+|.+-|.
T Consensus 91 -------A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TD-Vlggnr~G~~tIlV~Pl 140 (175)
T COG2179 91 -------AKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTD-VLGGNRAGMRTILVEPL 140 (175)
T ss_pred -------ccCccHHHHHHHHHHcCCChhHEEEEcchhhhh-hhcccccCcEEEEEEEe
Confidence 11111112222222222 13346678886543 33688899999987665
No 403
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=26.72 E-value=98 Score=29.81 Aligned_cols=38 Identities=11% Similarity=-0.028 Sum_probs=27.8
Q ss_pred CcEEEEEcCC-CccCHH---HHHHHHHHHHHCCCeEEEEeCC
Q 010940 9 QLHFVLIPLM-SPGHLI---PMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 9 ~~~il~~~~p-~~GHi~---P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+++|++++.+ +.=|-. -...+.++|.++||+|.++...
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 5589877743 222333 5688999999999999998644
No 404
>PLN00198 anthocyanidin reductase; Provisional
Probab=26.68 E-value=1.1e+02 Score=30.07 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 1 MASPLPAHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 1 m~~~~~~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|+-.-++.+++|++ .++.|.+ -..|++.|.++||+|+.+.-.
T Consensus 1 ~~~~~~~~~~~vlI--tG~~GfI--G~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 1 MATLTPTGKKTACV--IGGTGFL--ASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CCcccCCCCCeEEE--ECCchHH--HHHHHHHHHHCCCEEEEEECC
Confidence 44444455667766 4444544 356889999999999876533
No 405
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=26.58 E-value=89 Score=30.64 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
++|.++-.+++| .+||..|++.||+|++-.-.
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 479999999998 58999999999999999855
No 406
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=26.54 E-value=1.4e+02 Score=26.42 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCcEEEeCC--CCcchHHHHHHcCCCeEE
Q 010940 109 PFEQLFDKLHPRPSCIISGK--NLPWTVNSAIKFKIPTIL 146 (497)
Q Consensus 109 ~l~~ll~~~~~~pDlvI~D~--~~~~~~~~A~~lgiP~v~ 146 (497)
.+.+.+++. ++|.|++=. =...+..+|.++|+|++.
T Consensus 44 ~~~~~~~~~--~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~ 81 (179)
T COG0503 44 ELAERYKDD--GIDKIVTIEARGIPLAAAVALELGVPFVP 81 (179)
T ss_pred HHHHHhccc--CCCEEEEEccccchhHHHHHHHhCCCEEE
Confidence 566666665 899999544 226777799999999987
No 407
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=26.53 E-value=4e+02 Score=25.55 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCeEEEEeCC
Q 010940 27 IDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 27 l~LA~~L~~rGH~Vt~~~~~ 46 (497)
-+|...|.+.||+|++++=.
T Consensus 12 ~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKGGHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcC
Confidence 46788999999999999843
No 408
>CHL00194 ycf39 Ycf39; Provisional
Probab=26.52 E-value=90 Score=30.34 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
+|++ .|+.|.+- -.|+++|.++||+|+.++-
T Consensus 2 kIlV--tGatG~iG--~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 2 SLLV--IGATGTLG--RQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred EEEE--ECCCcHHH--HHHHHHHHHCCCeEEEEEc
Confidence 6766 56777654 4578899999999999874
No 409
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=26.51 E-value=77 Score=25.19 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCcchh
Q 010940 24 IPMIDMARLLAEHGIKVTIVTTPLNTTRF 52 (497)
Q Consensus 24 ~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~ 52 (497)
+|.+.|+++|.++|.+|.+.=|--.....
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 79999999999999998877655444333
No 410
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=26.47 E-value=2.8e+02 Score=26.42 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEee
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLE 72 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~ 72 (497)
+.++++ +.-+.| + -..+|+.|++|||+|.+++ ...++.+..-..- ....++....++
T Consensus 6 ~~~~lI-TGASsG-I--G~~~A~~lA~~g~~liLva--R~~~kL~~la~~l-~~~~~v~v~vi~ 62 (265)
T COG0300 6 GKTALI-TGASSG-I--GAELAKQLARRGYNLILVA--RREDKLEALAKEL-EDKTGVEVEVIP 62 (265)
T ss_pred CcEEEE-ECCCch-H--HHHHHHHHHHCCCEEEEEe--CcHHHHHHHHHHH-HHhhCceEEEEE
Confidence 334444 444433 3 4789999999999999998 4444433332211 112245555554
No 411
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=26.38 E-value=1.3e+02 Score=24.71 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=28.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
++++..+..++-.-+..+++.|+++|+.|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 35666777778888999999999999999988654
No 412
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=26.26 E-value=1.7e+02 Score=27.47 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=53.6
Q ss_pred HHHHHHHHHHCC-CeEEEEeCCCCcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHHHHHHH
Q 010940 26 MIDMARLLAEHG-IKVTIVTTPLNTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNFFHAAS 104 (497)
Q Consensus 26 ~l~LA~~L~~rG-H~Vt~~~~~~~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (497)
+-..++.|.+.+ .+|.+.+.......+... ......+-+..+|.+..+.+++... +.....
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~----~~~~~r~~~RvLp~~~~~~g~~~~~--------------iia~~G 179 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPA----PLPGERLFARVLPTPESALGFPPKN--------------IIAMQG 179 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhc----ccCCCEEEEEECCCccccCCCChhh--------------EEEEeC
Confidence 445667776777 666666655555544321 0122234445565543322322210 000001
Q ss_pred Hhh-HHHHHHHhhcCCCCcEEEeCCCCcch----HHHHHHcCCCeEEEc
Q 010940 105 MLK-QPFEQLFDKLHPRPSCIISGKNLPWT----VNSAIKFKIPTILFD 148 (497)
Q Consensus 105 ~~~-~~l~~ll~~~~~~pDlvI~D~~~~~~----~~~A~~lgiP~v~~~ 148 (497)
-+. +.=.+++++. +.|+||+=..=..+ ..+|+++|||++.+-
T Consensus 180 Pfs~e~n~al~~~~--~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 180 PFSKELNRALFRQY--GIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred CCCHHHHHHHHHHc--CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 111 2234567777 99999976532112 447999999999854
No 413
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=26.23 E-value=1.3e+02 Score=28.75 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNT 49 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (497)
-+++++..+. =+.|++.++++|.++|++|+++......
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 4777766544 5999999999999999999988655443
No 414
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=26.17 E-value=1.7e+02 Score=30.86 Aligned_cols=45 Identities=7% Similarity=0.069 Sum_probs=36.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
-+++...|+.|-..-.+.++...+.+|..|.|++.+...+.+...
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~ 319 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRN 319 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHH
Confidence 456677788899999999999999999999999988766555433
No 415
>PRK09072 short chain dehydrogenase; Provisional
Probab=26.17 E-value=1.2e+02 Score=28.18 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
++..+++++ ++.|.+- ..+++.|.++|++|+++.-.
T Consensus 3 ~~~~~vlIt--G~s~~iG--~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 3 LKDKRVLLT--GASGGIG--QALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CCCCEEEEE--CCCchHH--HHHHHHHHHCCCEEEEEECC
Confidence 344455553 4445443 78899999999999988743
No 416
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=26.06 E-value=4.4e+02 Score=27.31 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCcEEEeCCCCcchHHHHHHcCCCeEEEc
Q 010940 120 RPSCIISGKNLPWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 120 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 148 (497)
++|++|.+.. ...+|+++|||++.+.
T Consensus 371 ~~dliig~s~---~~~~a~~~gip~~~~g 396 (455)
T PRK14476 371 GADLLITNSH---GRQAAERLGIPLLRVG 396 (455)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 7999999974 4678999999998754
No 417
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=25.82 E-value=1e+02 Score=27.43 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|||.++ +.||+ -+.+|..|+++||+|+.+=..
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 467776 44444 388999999999999988644
No 418
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=25.67 E-value=1.3e+02 Score=32.19 Aligned_cols=91 Identities=12% Similarity=0.009 Sum_probs=49.3
Q ss_pred eCCCcCCCH-HhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEecc--------ccchHHhhhc
Q 010940 294 LGSICGLAT-WQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRG--------WAPQVLLLSH 364 (497)
Q Consensus 294 ~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~--------~~pq~~lL~~ 364 (497)
.||...... ..-+.+++.|++.|.+.|.-+.++.... +-+.+. ..+++.+.. +.-..--..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~------l~dal~---~~~~i~~i~~~hE~~A~~~Adgyar~t 74 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAILP------LYDALS---QSTQIRHILARHEQGAGFIAQGMARTT 74 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccHH------HHHHHh---ccCCceEEEeccHHHHHHHHHHHHHHc
Confidence 344444332 3355688888888888887766554311 112221 122332221 1111111111
Q ss_pred CCccccccCCCc------hhHHHHHhhCCceeecc
Q 010940 365 RAIGGFLTHCGW------NSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 365 ~~~~~~I~HgG~------gt~~eal~~GvP~v~iP 393 (497)
-...++++|.|- +++.+|...++|+|++.
T Consensus 75 g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 233448888775 48999999999999995
No 419
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.59 E-value=1.4e+02 Score=31.86 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=28.3
Q ss_pred CcEEEEEcCC-------CccCHHHHHH---HHHHHHHCCCeEEEEeCCCCc
Q 010940 9 QLHFVLIPLM-------SPGHLIPMID---MARLLAEHGIKVTIVTTPLNT 49 (497)
Q Consensus 9 ~~~il~~~~p-------~~GHi~P~l~---LA~~L~~rGH~Vt~~~~~~~~ 49 (497)
+.++++++.. -.||+.+.|+ +|+-++-+||+|.|++...-+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeH 54 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEH 54 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCC
Confidence 3466666542 5599996664 566666689999999865433
No 420
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=25.55 E-value=94 Score=31.74 Aligned_cols=32 Identities=22% Similarity=0.085 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
.+||.|+-.+..| +.+|..|+++||+|+.+-.
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 3588888665554 6789999999999998864
No 421
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.41 E-value=1.7e+02 Score=27.01 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=62.6
Q ss_pred CCccCHHHHHHHHHHHHHCCCeEEEEeCCC-CcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCCCCCCCChhHH
Q 010940 18 MSPGHLIPMIDMARLLAEHGIKVTIVTTPL-NTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCENMDKLPSRDLI 96 (497)
Q Consensus 18 p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~-~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (497)
-+..|+.-.+.+...++.||=.+.|+++.. +.+.+++..... .++-+.-..++ |+-.+.....+.
T Consensus 89 qT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~--~gy~~~~~w~~------G~lTN~~~l~g~------ 154 (251)
T KOG0832|consen 89 QTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRA--GGYSHNRKWLG------GLLTNARELFGA------ 154 (251)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHh--cCceeeeeecc------ceeecchhhccc------
Confidence 366788999999999999999999998765 445555553221 11111111121 222211111100
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCcEEEeC-CCC-cchHHHHHHcCCCeEEEccchH
Q 010940 97 KNFFHAASMLKQPFEQLFDKLHPRPSCIISG-KNL-PWTVNSAIKFKIPTILFDGMGC 152 (497)
Q Consensus 97 ~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D-~~~-~~~~~~A~~lgiP~v~~~~~~~ 152 (497)
... -.........++... .+|+||+= ..- ..++.=|.+++||+|.+.=+.+
T Consensus 155 --~~~-~~~~~pd~~~f~~t~--~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 155 --LVR-KFLSLPDALCFLPTL--TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred --ccc-cccCCCcceeecccC--CcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 000 000111122233333 77988754 433 4566669999999999776543
No 422
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=25.34 E-value=66 Score=27.15 Aligned_cols=21 Identities=33% Similarity=0.276 Sum_probs=18.4
Q ss_pred HHHHHHHHHCCCeEEEEeCCC
Q 010940 27 IDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 27 l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
.-+|..|.++||+|++++...
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHHCCCceEEEEccc
Confidence 457899999999999999776
No 423
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=25.29 E-value=1.8e+02 Score=25.33 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=32.7
Q ss_pred HHHhhHHHHHHHhhcCCCCcEEEeCCCCcch---------------HHHHHHcCCCeEEEccc
Q 010940 103 ASMLKQPFEQLFDKLHPRPSCIISGKNLPWT---------------VNSAIKFKIPTILFDGM 150 (497)
Q Consensus 103 ~~~~~~~l~~ll~~~~~~pDlvI~D~~~~~~---------------~~~A~~lgiP~v~~~~~ 150 (497)
...+...+.+++++. +||.++.+..++.- ..++.+.|+|+.-+.|+
T Consensus 46 l~~I~~~l~~~i~~~--~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 46 LKQIYDGLSELIDEY--QPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 445567788888888 99999887743321 22466789998887665
No 424
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=25.28 E-value=1.2e+02 Score=25.65 Aligned_cols=37 Identities=22% Similarity=0.072 Sum_probs=28.7
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEe
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIR 324 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 324 (497)
..+|++++||.-....+.++.+++.+. .+.++++...
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 348999999998877888888988884 3567776554
No 425
>PRK04940 hypothetical protein; Provisional
Probab=25.11 E-value=1.7e+02 Score=25.93 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=25.2
Q ss_pred CCcEEEeCCCC-cchHHHHHHcCCCeEEEccc
Q 010940 120 RPSCIISGKNL-PWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 120 ~pDlvI~D~~~-~~~~~~A~~lgiP~v~~~~~ 150 (497)
+++++|...+- +++..+|++.|+|.|++.|+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46788877765 67888999999999998876
No 426
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=25.02 E-value=4.5e+02 Score=23.74 Aligned_cols=102 Identities=7% Similarity=0.108 Sum_probs=55.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCC-CcchhhhhHhhhhhcCCCeeEEEeeCCCccCCCCCCCCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEH--GIKVTIVTTPL-NTTRFNITIKRAVESGLSIQLLQLEFPSVESGLPQGCEN 86 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~r--GH~Vt~~~~~~-~~~~~~~~~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~ 86 (497)
+||+++.++..+.+.- |+++...- ..+|..+.... +...+++.. ..|+....+.- .
T Consensus 1 ~ki~VlaSG~GSNlqa---iida~~~~~~~a~i~~Visd~~~A~~lerA~------~~gIpt~~~~~--------k---- 59 (200)
T COG0299 1 KKIAVLASGNGSNLQA---IIDAIKGGKLDAEIVAVISDKADAYALERAA------KAGIPTVVLDR--------K---- 59 (200)
T ss_pred CeEEEEEeCCcccHHH---HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHH------HcCCCEEEecc--------c----
Confidence 4788888888887654 45555422 24676665443 544444442 22566544420 0
Q ss_pred CCCCCChhHHHHHHHHHHHhhHHHHHHHhhcCCCCcEEEeCCCC-cchHHHHHHcCCCeEE
Q 010940 87 MDKLPSRDLIKNFFHAASMLKQPFEQLFDKLHPRPSCIISGKNL-PWTVNSAIKFKIPTIL 146 (497)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~v~ 146 (497)
.. ..-+.+...+.+.+++. +||+|+.-.++ .-+..+-..+.-..+.
T Consensus 60 --~~----------~~r~~~d~~l~~~l~~~--~~dlvvLAGyMrIL~~~fl~~~~grIlN 106 (200)
T COG0299 60 --EF----------PSREAFDRALVEALDEY--GPDLVVLAGYMRILGPEFLSRFEGRILN 106 (200)
T ss_pred --cC----------CCHHHHHHHHHHHHHhc--CCCEEEEcchHHHcCHHHHHHhhcceEe
Confidence 00 01123345566777777 99999977654 3334343434334444
No 427
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=25.00 E-value=4e+02 Score=25.74 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNT 49 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (497)
+..|+++-.++.|=..-...|+..|.++|+.|.++..+...
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45667777789999999999999999999999998866443
No 428
>PLN02778 3,5-epimerase/4-reductase
Probab=24.92 E-value=1.4e+02 Score=28.82 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEE
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIV 43 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~ 43 (497)
.++||++ .|+.|.+-. .|++.|.++||+|++.
T Consensus 8 ~~~kiLV--tG~tGfiG~--~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 8 ATLKFLI--YGKTGWIGG--LLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCeEEE--ECCCCHHHH--HHHHHHHhCCCEEEEe
Confidence 3578887 566666654 5788899999999864
No 429
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=24.91 E-value=71 Score=29.51 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 22 HLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 22 Hi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|+.-|-..|++|+++||+|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6778899999999999999999866
No 430
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.88 E-value=1.4e+02 Score=25.96 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=37.7
Q ss_pred cCHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhh
Q 010940 433 IKREKVKEAIEKLMDRGKQGEKRRKRARQLGEIANRAIGVGGSSHRNIEMLIEFVIQQT 491 (497)
Q Consensus 433 ~~~~~l~~ai~~vl~~~~~~~~~~~~a~~~~~~~~~a~~~gg~~~~~~~~~~~~~~~~~ 491 (497)
.+.+-|++++.++-..-....++-.+...|+.++-+ +|.+ ++.+|+.+-=.+.
T Consensus 93 ~DvepI~~~Ldkl~~~~~q~~a~lHklE~~RdrLia----~GD~--Alt~~l~~~P~aD 145 (187)
T COG3028 93 RDVEPIRAALDKLRNRHNQQVALLHKLEQLRDRLIA----EGDG--ALTEFLNQYPDAD 145 (187)
T ss_pred CChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh----cCch--HHHHHHHHCCccc
Confidence 578889999988876444455677888888988864 3444 8888888543333
No 431
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.83 E-value=1.1e+02 Score=22.58 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCC
Q 010940 25 PMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 25 P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
.-+.+|..|+++|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45889999999999999998654
No 432
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=24.60 E-value=66 Score=28.34 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=63.8
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCC
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRA 366 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~ 366 (497)
+.+-.+.+|.+. +.+++-++.+|.+|+..-...... ..+. ...+ .+.+-+++++.++
T Consensus 37 ~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~~---------~~~~----~~~~---~~~~l~ell~~aD 93 (178)
T PF02826_consen 37 KTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPKPE---------EGAD----EFGV---EYVSLDELLAQAD 93 (178)
T ss_dssp SEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCHHH---------HHHH----HTTE---EESSHHHHHHH-S
T ss_pred CEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCChh---------hhcc----cccc---eeeehhhhcchhh
Confidence 348888999887 667777888898877654432110 0011 0122 5567888999999
Q ss_pred ccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcce-EEeccccccccccccccccccCHHHHHHHHHH
Q 010940 367 IGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIG-VSVGIEAAVTWGLEDKSGLVIKREKVKEAIEK 444 (497)
Q Consensus 367 ~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G-~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ 444 (497)
+ ++.|+-.+. --.+..++..+ +.++=| +-++..+ +..+++++|.+++++
T Consensus 94 i--v~~~~plt~----------------~T~~li~~~~l-~~mk~ga~lvN~aR----------G~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 94 I--VSLHLPLTP----------------ETRGLINAEFL-AKMKPGAVLVNVAR----------GELVDEDALLDALES 143 (178)
T ss_dssp E--EEE-SSSST----------------TTTTSBSHHHH-HTSTTTEEEEESSS----------GGGB-HHHHHHHHHT
T ss_pred h--hhhhhcccc----------------ccceeeeeeee-eccccceEEEeccc----------hhhhhhhHHHHHHhh
Confidence 8 777754321 12567888888 547766 4445544 346888888888764
No 433
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.59 E-value=1.4e+02 Score=22.28 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=27.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
.+|++++. ...+..-.+.+++.|++.|.+|.+-.
T Consensus 2 ~~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 2 VQVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred eEEEEEee-CchHHHHHHHHHHHHHHCCCEEEEEC
Confidence 45666665 45678889999999999999998844
No 434
>PRK05858 hypothetical protein; Provisional
Probab=24.54 E-value=2.7e+02 Score=29.50 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=21.5
Q ss_pred cccccCCCc------hhHHHHHhhCCceeecc
Q 010940 368 GGFLTHCGW------NSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 368 ~~~I~HgG~------gt~~eal~~GvP~v~iP 393 (497)
++++.|.|- +++++|...++|+|++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 347878774 58899999999999986
No 435
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=24.46 E-value=8.2e+02 Score=25.49 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.3
Q ss_pred CCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 18 MSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 18 p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
...|=..-...|++.|+++|++|..+=+-
T Consensus 8 t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 8 SSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 34677888999999999999999987654
No 436
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=24.37 E-value=1.8e+02 Score=26.93 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=37.2
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 12 FVLIPL-MSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 12 il~~~~-p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
|.|++. |+.|=..-.+.||.+|+++|-.|+++=..+++......
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~ 48 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWA 48 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHH
Confidence 445555 89999999999999999999999999999888766543
No 437
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=24.35 E-value=1.3e+02 Score=26.28 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=21.6
Q ss_pred ccccccCCCc------hhHHHHHhhCCceeeccc
Q 010940 367 IGGFLTHCGW------NSTLEGVSAGVPLVTCPL 394 (497)
Q Consensus 367 ~~~~I~HgG~------gt~~eal~~GvP~v~iP~ 394 (497)
..++++|.|- +++.+|...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 3448888874 588899999999999975
No 438
>PRK03094 hypothetical protein; Provisional
Probab=24.30 E-value=69 Score=24.18 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 010940 26 MIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+-.|.+.|+++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 446899999999999877654
No 439
>PRK11269 glyoxylate carboligase; Provisional
Probab=24.26 E-value=2e+02 Score=30.98 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=22.1
Q ss_pred ccccccCCC------chhHHHHHhhCCceeecc
Q 010940 367 IGGFLTHCG------WNSTLEGVSAGVPLVTCP 393 (497)
Q Consensus 367 ~~~~I~HgG------~gt~~eal~~GvP~v~iP 393 (497)
.+++++|.| .+.+++|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 444777767 578999999999999995
No 440
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=24.26 E-value=6.7e+02 Score=24.79 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=20.6
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCC
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGG 326 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 326 (497)
++.|.-+.+.+ ..+++.+.+++.+++++.+..
T Consensus 179 ~lqIgAr~~~N------~~LL~~va~~~kPViLk~G~~ 210 (335)
T PRK08673 179 ILQIGARNMQN------FDLLKEVGKTNKPVLLKRGMS 210 (335)
T ss_pred eEEECcccccC------HHHHHHHHcCCCcEEEeCCCC
Confidence 56665555543 335667777888888887654
No 441
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.16 E-value=1.2e+02 Score=26.63 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCCcEEEeCCCCcc-hHHHHHHcCCCeEEEcc
Q 010940 109 PFEQLFDKLHPRPSCIISGKNLPW-TVNSAIKFKIPTILFDG 149 (497)
Q Consensus 109 ~l~~ll~~~~~~pDlvI~D~~~~~-~~~~A~~lgiP~v~~~~ 149 (497)
.++++++- +||+||....... ...-.++.|+|++.+..
T Consensus 52 n~E~l~~l---~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 52 NVEKIVAL---KPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred CHHHHhcc---CCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 46666543 9999998653322 23345778999887653
No 442
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.95 E-value=1.4e+02 Score=28.09 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcCCCCcEEEeCCCCcchHHH-------HHHcCCCeEEE
Q 010940 107 KQPFEQLFDKLHPRPSCIISGKNLPWTVNS-------AIKFKIPTILF 147 (497)
Q Consensus 107 ~~~l~~ll~~~~~~pDlvI~D~~~~~~~~~-------A~~lgiP~v~~ 147 (497)
.+.+.+++++. +.|+|| |...+++..+ |+..|||++.+
T Consensus 55 ~e~l~~~l~e~--~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 55 AEGLAAFLREE--GIDLLI-DATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHHc--CCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEE
No 443
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=23.78 E-value=93 Score=27.12 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
.++|+++-++++||. .|.-|++-|++|++..-+..
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTC
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCC
Confidence 468999999999985 58889999999999876654
No 444
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=23.77 E-value=3.8e+02 Score=22.29 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=13.1
Q ss_pred HHHHHHCCCe-EEEEeCCC
Q 010940 30 ARLLAEHGIK-VTIVTTPL 47 (497)
Q Consensus 30 A~~L~~rGH~-Vt~~~~~~ 47 (497)
++.|.++||+ |.|++.+.
T Consensus 1 ~~~L~~~G~r~i~~i~~~~ 19 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPP 19 (160)
T ss_dssp HHHHHHTT-SSEEEEESST
T ss_pred ChHHHHCCCCeEEEEecCC
Confidence 5789999995 88888444
No 445
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=23.76 E-value=7.3e+02 Score=24.65 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=37.3
Q ss_pred cccCCCchhHHHHHhhCCceeecc---ccccccc------hHHHHHHHHcceEEeccccccccccccccccccCHHHHHH
Q 010940 370 FLTHCGWNSTLEGVSAGVPLVTCP---LFAEQFY------NEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKE 440 (497)
Q Consensus 370 ~I~HgG~gt~~eal~~GvP~v~iP---~~~DQ~~------na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (497)
.|---|..++.+|+..|.+.+..+ .+.|--. ..-++++ ..+-- .- ..++++|.+
T Consensus 207 GVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~-~~vd~---~v-------------~V~e~ei~~ 269 (347)
T COG1171 207 GVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILR-ELVDD---IV-------------LVDEDEICA 269 (347)
T ss_pred EEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHH-HcCCc---EE-------------EECHHHHHH
Confidence 556668889999999997766665 3444211 1122223 12221 11 167888999
Q ss_pred HHHHHHcC
Q 010940 441 AIEKLMDR 448 (497)
Q Consensus 441 ai~~vl~~ 448 (497)
+++.+.++
T Consensus 270 am~~l~~~ 277 (347)
T COG1171 270 AMRDLFER 277 (347)
T ss_pred HHHHHHhc
Confidence 99888875
No 446
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=23.68 E-value=1.1e+02 Score=29.18 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=23.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
|++ .++.|.+- ..|++.|.++||+|..+...
T Consensus 3 ILV--tG~tGfiG--~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 3 ILV--TGGAGFIG--SHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred EEE--EcCcccHH--HHHHHHHHhCCCeEEEEeCC
Confidence 555 34455555 88999999999999999854
No 447
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.60 E-value=1.5e+02 Score=26.93 Aligned_cols=34 Identities=18% Similarity=0.039 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
.++|++ .++.|++ -..|++.|.++||+|+++...
T Consensus 6 ~~~vlI--tGasg~i--G~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 6 GRVALV--TGAARGL--GRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCEEEE--eCCCchH--HHHHHHHHHHCCCeEEEEeCC
Confidence 346776 4556664 467889999999999775544
No 448
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=23.60 E-value=1.7e+02 Score=26.82 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=24.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
++|++ .++.|.+ -..|++.|.++|++|+.+...
T Consensus 7 ~~ilI--tGasg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 7 RVALV--TGAARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CEEEE--cCCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 45655 4556666 578899999999999887654
No 449
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.53 E-value=1.3e+02 Score=24.22 Aligned_cols=69 Identities=9% Similarity=-0.004 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEec-------cccchHHhhhcC-CccccccCC
Q 010940 303 WQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIR-------GWAPQVLLLSHR-AIGGFLTHC 374 (497)
Q Consensus 303 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~-------~~~pq~~lL~~~-~~~~~I~Hg 374 (497)
+.-.++++++++.+.+++......+..+ .... ..+..+.. .|+..+.++.-+ .-++...|+
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~~s--------~~~~---~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDTVS--------THVD---MADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTTG--------HHHH---HSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred HHHHHHHHHHHHhCCcceeccCchhccc--------cccc---ccccceecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 4456789999999999998887654321 1111 12222222 466655544332 113488999
Q ss_pred CchhHHHH
Q 010940 375 GWNSTLEG 382 (497)
Q Consensus 375 G~gt~~ea 382 (497)
|+|-..|.
T Consensus 81 Gyg~lse~ 88 (110)
T PF00289_consen 81 GYGFLSEN 88 (110)
T ss_dssp TSSTTTTH
T ss_pred ccchhHHH
Confidence 99877766
No 450
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=23.49 E-value=1.1e+02 Score=24.30 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCCCcEEEeCCCC---cchHHHHHHcCCCeEE
Q 010940 108 QPFEQLFDKLHPRPSCIISGKNL---PWTVNSAIKFKIPTIL 146 (497)
Q Consensus 108 ~~l~~ll~~~~~~pDlvI~D~~~---~~~~~~A~~lgiP~v~ 146 (497)
..+.++.++. ++|+||..+-. -......++.|||++-
T Consensus 52 ~~l~~~a~~~--~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 52 EELADFAKEN--KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHT--TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHc--CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 3456666777 99999999843 3445567778999763
No 451
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=23.47 E-value=1.8e+02 Score=21.60 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=27.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 010940 12 FVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 12 il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
+++...++.|=..-...||..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666788888899999999999999998876
No 452
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=23.46 E-value=91 Score=27.13 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 17 LMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 17 ~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
.++.|++- ..|+++|.++||+|+.++-.
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESS
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecC
Confidence 45666654 45899999999999999955
No 453
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=23.38 E-value=9.5e+02 Score=25.84 Aligned_cols=133 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred hhhhccCCCCCCC--cCcchhcccccCCCCCeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccc
Q 010940 259 KAERCRGENGSTV--DDYEQCLKWLDSWEPGSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWI 336 (497)
Q Consensus 259 ~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~ 336 (497)
+++|+.++..... ..+-++-+|.-.++...++++++|++. .......+.|.+.|..+-++
T Consensus 472 RyPrg~~~~~~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~----~~al~vae~L~~~Gi~~TVv-------------- 533 (627)
T COG1154 472 RYPRGNGVGVILTPELEPLEIGKGELLKEGEKVAILAFGTML----PEALKVAEKLNAYGISVTVV-------------- 533 (627)
T ss_pred EecCCCCCCCCcccccccccccceEEEecCCcEEEEecchhh----HHHHHHHHHHHhcCCCcEEE--------------
Q ss_pred cchhHHHHhCCCCeEeccccchH---HhhhcCCcccccc------CCCchhHHHH--HhhC--Cceeeccc---cccccc
Q 010940 337 QEEGFEERTTGRGFIIRGWAPQV---LLLSHRAIGGFLT------HCGWNSTLEG--VSAG--VPLVTCPL---FAEQFY 400 (497)
Q Consensus 337 lp~~~~~~~~~~nv~v~~~~pq~---~lL~~~~~~~~I~------HgG~gt~~ea--l~~G--vP~v~iP~---~~DQ~~ 400 (497)
|.+++.-++.. .+..+-+. +|| +||.||-.-. ..+| +|++.+.+ |.||..
T Consensus 534 ------------d~rfvkPlD~~ll~~La~~h~~--~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~ 599 (627)
T COG1154 534 ------------DPRFVKPLDEALLLELAKSHDL--VVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGS 599 (627)
T ss_pred ------------cCeecCCCCHHHHHHHHhhcCe--EEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCC
Q ss_pred hHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHH
Q 010940 401 NEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLM 446 (497)
Q Consensus 401 na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl 446 (497)
-...+ .-+| ++++.|.+.|.+.+
T Consensus 600 ~~el~---~~~g--------------------Ld~~~i~~~i~~~l 622 (627)
T COG1154 600 PEELL---AELG--------------------LDAEGIARRILEWL 622 (627)
T ss_pred HHHHH---HHcC--------------------CCHHHHHHHHHHHH
No 454
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=23.35 E-value=1.2e+02 Score=23.54 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHCCCeEE
Q 010940 23 LIPMIDMARLLAEHGIKVT 41 (497)
Q Consensus 23 i~P~l~LA~~L~~rGH~Vt 41 (497)
..-|-..|+.|+++||.|.
T Consensus 15 ~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 15 RPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred HHHHHHHHHHHHHCCCEEe
Confidence 3668889999999998875
No 455
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.29 E-value=2.2e+02 Score=22.20 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+.+||+++|..+.|--.-.-.+=+.+.++|.++.+-...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 457999999877663333345555666688887765544
No 456
>PRK06487 glycerate dehydrogenase; Provisional
Probab=23.25 E-value=3.1e+02 Score=26.82 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=60.1
Q ss_pred CeEEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCC
Q 010940 287 GSVIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRA 366 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~ 366 (497)
+.+-.+.+|.+. +.+++-++.++.+++..-.. .. + . ...+++-+++|+.++
T Consensus 149 ktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~-~~---------~---------~---~~~~~~l~ell~~sD 199 (317)
T PRK06487 149 KTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLP-GR---------P---------A---RPDRLPLDELLPQVD 199 (317)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCC-CC---------c---------c---cccccCHHHHHHhCC
Confidence 348889999887 55667777788887643211 00 0 0 123456788999998
Q ss_pred ccccccCCCchhHHHHHhhCCceeeccccccccchHHHHHHHHcce-EEeccccccccccccccccccCHHHHHHHHHH
Q 010940 367 IGGFLTHCGWNSTLEGVSAGVPLVTCPLFAEQFYNEKLAVQVLGIG-VSVGIEAAVTWGLEDKSGLVIKREKVKEAIEK 444 (497)
Q Consensus 367 ~~~~I~HgG~gt~~eal~~GvP~v~iP~~~DQ~~na~~~~~~~G~G-~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~ 444 (497)
+ ++.|+-.+.- -.+..|+..+ +.++=| +-++..+ +..+++++|.+|++.
T Consensus 200 i--v~l~lPlt~~----------------T~~li~~~~~-~~mk~ga~lIN~aR----------G~vVde~AL~~AL~~ 249 (317)
T PRK06487 200 A--LTLHCPLTEH----------------TRHLIGAREL-ALMKPGALLINTAR----------GGLVDEQALADALRS 249 (317)
T ss_pred E--EEECCCCChH----------------HhcCcCHHHH-hcCCCCeEEEECCC----------ccccCHHHHHHHHHc
Confidence 7 8777654322 1345667777 335554 3334433 335777777777765
No 457
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=22.98 E-value=1.1e+02 Score=27.58 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCcEEE-eCCCC-cchHHHHHHcCCCeEEEccchH
Q 010940 120 RPSCII-SGKNL-PWTVNSAIKFKIPTILFDGMGC 152 (497)
Q Consensus 120 ~pDlvI-~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 152 (497)
.||+|| +|+.. .-+..=|.++|||++.++-+.+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 789886 55544 4555569999999999887643
No 458
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=22.96 E-value=1.5e+02 Score=24.21 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
...|+++++++. +...+..++.|.+.|.+++++...
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 457888888887 466799999999999998887633
No 459
>PRK12828 short chain dehydrogenase; Provisional
Probab=22.91 E-value=1.6e+02 Score=26.65 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+.+.+++ .++.|.+ -..+++.|.++|++|+++...
T Consensus 6 ~~k~vlI--tGatg~i--G~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 6 QGKVVAI--TGGFGGL--GRATAAWLAARGARVALIGRG 40 (239)
T ss_pred CCCEEEE--ECCCCcH--hHHHHHHHHHCCCeEEEEeCC
Confidence 3445555 4555666 478889999999998887753
No 460
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=22.85 E-value=8.4e+02 Score=26.20 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=11.5
Q ss_pred cCHHHHHHHHHHHH
Q 010940 433 IKREKVKEAIEKLM 446 (497)
Q Consensus 433 ~~~~~l~~ai~~vl 446 (497)
++++.|.++|++++
T Consensus 567 l~~~~I~~~i~~~l 580 (581)
T PRK12315 567 LTPEQIVEDILSVL 580 (581)
T ss_pred cCHHHHHHHHHHHh
Confidence 78888998888765
No 461
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.83 E-value=1.6e+02 Score=26.96 Aligned_cols=33 Identities=21% Similarity=0.088 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
..++++ .++.|.+ -..++++|.++|++|.+..-
T Consensus 6 ~~~vli--tGasg~i--G~~l~~~l~~~g~~v~~~~~ 38 (252)
T PRK06077 6 DKVVVV--TGSGRGI--GRAIAVRLAKEGSLVVVNAK 38 (252)
T ss_pred CcEEEE--eCCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 345555 3455555 47899999999999877553
No 462
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=22.78 E-value=1.5e+02 Score=27.38 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=26.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCe
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIK 39 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~ 39 (497)
=|+|+-.|+.|-......|.++|+++||.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 37788889999999999999999999986
No 463
>PRK12829 short chain dehydrogenase; Provisional
Probab=22.72 E-value=1.3e+02 Score=27.90 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
+.+++++ .++.|.+ -..+++.|.++||+|+.+.-
T Consensus 10 ~~~~vlI--tGa~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 10 DGLRVLV--TGGASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CCCEEEE--eCCCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 4567776 3555666 47789999999999988774
No 464
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=22.62 E-value=1.3e+02 Score=29.41 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 109 PFEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 109 ~l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
++..++. .-|++|+.. ++...+|..+|+|++.++..
T Consensus 246 elaali~----~a~l~I~nD--SGp~HlA~A~g~p~valfGp 281 (322)
T PRK10964 246 QVARVLA----GAKAVVSVD--TGLSHLTAALDRPNITLYGP 281 (322)
T ss_pred HHHHHHH----hCCEEEecC--CcHHHHHHHhCCCEEEEECC
Confidence 3445554 669999876 67888999999999998764
No 465
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=22.59 E-value=2.3e+02 Score=28.82 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=23.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
||||++-.+++-| +||+.|++-+---.++..+
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~ap 32 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAP 32 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeC
Confidence 5899999999998 5899998865443333333
No 466
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=22.52 E-value=1.3e+02 Score=29.35 Aligned_cols=39 Identities=3% Similarity=-0.203 Sum_probs=29.2
Q ss_pred EEEEEcCC---CccCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Q 010940 11 HFVLIPLM---SPGHLIPMIDMARLLAEHGIKVTIVTTPLNT 49 (497)
Q Consensus 11 ~il~~~~p---~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~ 49 (497)
||+|+.-| -.-+..-..+|.++..+|||+|.++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 2 KVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred eEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 56666654 2245567789999999999999999988543
No 467
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=22.48 E-value=1.7e+02 Score=26.20 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=28.4
Q ss_pred HhhHHHHHHHhhcCCCCcEEEeCCC--CcchHHHHHHcCCCeEEEc
Q 010940 105 MLKQPFEQLFDKLHPRPSCIISGKN--LPWTVNSAIKFKIPTILFD 148 (497)
Q Consensus 105 ~~~~~l~~ll~~~~~~pDlvI~D~~--~~~~~~~A~~lgiP~v~~~ 148 (497)
.....+.+.+++. ++|+|++=.. .+.+..+|..+|+|++.+-
T Consensus 37 ~i~~~la~~~~~~--~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 37 EIGKEFARRFKDE--GITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHHHHHhccC--CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 3344455555555 8999985442 2567778999999998743
No 468
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.43 E-value=1.1e+02 Score=31.59 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
++.++++++- .|. .- +.+|+.|+++||+|++.....
T Consensus 3 ~~~k~v~iiG---~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVG---AGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEEC---CCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 4456787763 333 23 599999999999999886643
No 469
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=22.40 E-value=4.3e+02 Score=25.25 Aligned_cols=24 Identities=38% Similarity=0.347 Sum_probs=20.0
Q ss_pred HHHHHHHHHCCCeEEEEeCCCCcc
Q 010940 27 IDMARLLAEHGIKVTIVTTPLNTT 50 (497)
Q Consensus 27 l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (497)
.++|..|+++|++|.++...+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 468889999999999999876654
No 470
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=22.32 E-value=1.4e+02 Score=30.43 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=31.1
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 9 QLHFVLIPL--MSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 9 ~~~il~~~~--p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
+++|+.+.. |+.|=..-.+.||..|+.+|++|.++=..+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 445544444 899999999999999999999999985443
No 471
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=22.31 E-value=84 Score=29.06 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=16.6
Q ss_pred HHHHHHHHHHCCCeEEEEe
Q 010940 26 MIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~ 44 (497)
-.+||++|.++|++|+++.
T Consensus 28 G~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHHCCCEEEEEc
Confidence 4678999999999999875
No 472
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=22.01 E-value=1e+02 Score=30.29 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=26.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+||+|+-.+..| ..+|..|.++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 579999888777 46789999999999999754
No 473
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=22.00 E-value=2e+02 Score=27.71 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCCcchhhhhHhhhhhcC--CCeeEEEeeCCCccCCCCCCCCCCCCCCChhHHHHHHHH
Q 010940 25 PMIDMARLLAEHGIKVTIVTTPLNTTRFNITIKRAVESG--LSIQLLQLEFPSVESGLPQGCENMDKLPSRDLIKNFFHA 102 (497)
Q Consensus 25 P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~--~~i~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (497)
..+.|++.|.++|++|..+..+.....+........... .+.++.-+|.+ +...+. .+...
T Consensus 12 r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~----~~~~~~-------------~i~~~ 74 (287)
T TIGR02853 12 RQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVP----GTSHDG-------------KVATV 74 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCc----cccCCc-------------eEecc
Q ss_pred HHHhhHHH-HHHHhhcCCCCcEEEeCCCCcchHH-HHHHcCCCeEEE
Q 010940 103 ASMLKQPF-EQLFDKLHPRPSCIISGKNLPWTVN-SAIKFKIPTILF 147 (497)
Q Consensus 103 ~~~~~~~l-~~ll~~~~~~pDlvI~D~~~~~~~~-~A~~lgiP~v~~ 147 (497)
.....-.+ +++++.. ++..+++......-.. .|++.||+++-+
T Consensus 75 ~~~~~~~l~~~~l~~~--~~~~~~~~G~~~~~l~~~a~~~gi~v~~~ 119 (287)
T TIGR02853 75 FSNEKVVLTPELLEST--KGHCTIYVGISNPYLEQLAADAGVKLIEL 119 (287)
T ss_pred cccCCccccHHHHHhc--CCCCEEEEecCCHHHHHHHHHCCCeEEEE
No 474
>PRK08265 short chain dehydrogenase; Provisional
Probab=21.98 E-value=1.6e+02 Score=27.38 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=22.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
+.++++..+. .--..+|+.|.++|++|+++.-
T Consensus 7 k~vlItGas~---gIG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGAT---LIGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEECCCC---hHHHHHHHHHHHCCCEEEEEeC
Confidence 3445554443 2567889999999999988764
No 475
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=21.92 E-value=6e+02 Score=23.01 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=55.7
Q ss_pred CeEEEEeeCCCcCCCH-HhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcC
Q 010940 287 GSVIYACLGSICGLAT-WQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHR 365 (497)
Q Consensus 287 ~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~ 365 (497)
++.|-|-+|-|..... +.++. ++.....+.++++.-...+ .+. ..
T Consensus 26 ~G~i~vI~gPMfSGKTt~LLrr-~r~~~~~grrv~liK~~kD----------------------TRy-----------~~ 71 (234)
T KOG3125|consen 26 RGTIHVILGPMFSGKTTELLRR-IRREIIAGRRVLLIKYAKD----------------------TRY-----------ES 71 (234)
T ss_pred CceEEEEeccccCcchHHHHHH-HHHHHhcCceEEEEEecCC----------------------ccc-----------ch
Confidence 4478888999988554 44443 4444456666655432211 111 02
Q ss_pred CccccccCCCchhH--------------HHHHhhCCceeecc---ccccccchHHHHHHHHcceEEe
Q 010940 366 AIGGFLTHCGWNST--------------LEGVSAGVPLVTCP---LFAEQFYNEKLAVQVLGIGVSV 415 (497)
Q Consensus 366 ~~~~~I~HgG~gt~--------------~eal~~GvP~v~iP---~~~DQ~~na~~~~~~~G~G~~l 415 (497)
+. ++||+|.... .+++...|-+|.|= |+.||...++.+++..|-=+.+
T Consensus 72 ~s--i~Thdg~~~~c~~lp~a~~~s~f~~d~~~~~vdVigIDEaQFf~dl~efc~evAd~~Gk~Viv 136 (234)
T KOG3125|consen 72 SS--IVTHDGIEMPCWALPDASFLSEFGKDALNGDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIV 136 (234)
T ss_pred he--eEeccCCcccccccCCchhHHHHHHHHhcCcceEEEecHHHHhHHHHHHHHHHHhccCCEEEE
Confidence 33 7777776322 23444567777776 6789999999997756654444
No 476
>PRK07576 short chain dehydrogenase; Provisional
Probab=21.87 E-value=2.2e+02 Score=26.63 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=26.8
Q ss_pred CCCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 1 MASPLPAHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 1 m~~~~~~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
|.-||+++..+++++ ++.|.+ -..+++.|.++||+|+++.-
T Consensus 1 ~~~~~~~~~k~ilIt--GasggI--G~~la~~l~~~G~~V~~~~r 41 (264)
T PRK07576 1 MTTMFDFAGKNVVVV--GGTSGI--NLGIAQAFARAGANVAVASR 41 (264)
T ss_pred CCccccCCCCEEEEE--CCCchH--HHHHHHHHHHCCCEEEEEeC
Confidence 333444444566664 445544 46788999999999988763
No 477
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=21.87 E-value=1.9e+02 Score=25.08 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=20.8
Q ss_pred CCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 18 MSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 18 p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
.+-|++. .|++.|+++|.+|..++.+.
T Consensus 113 SgD~DF~---~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 113 TRDADFL---PVINKAKENGKETIVIGAEP 139 (160)
T ss_pred eccHhHH---HHHHHHHHCCCEEEEEeCCC
Confidence 4556655 46788999999999999664
No 478
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.85 E-value=1.4e+02 Score=29.00 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHHHhhcCCCCcEEEeCCCCcchHHHHHHcCCCeEEEccc
Q 010940 110 FEQLFDKLHPRPSCIISGKNLPWTVNSAIKFKIPTILFDGM 150 (497)
Q Consensus 110 l~~ll~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 150 (497)
+..+++ +-|++|+.. ++...+|..+|+|++.++..
T Consensus 248 l~ali~----~a~l~I~~D--Sgp~HlAaa~g~P~i~lfg~ 282 (319)
T TIGR02193 248 VAALLA----GADAVVGVD--TGLTHLAAALDKPTVTLYGA 282 (319)
T ss_pred HHHHHH----cCCEEEeCC--ChHHHHHHHcCCCEEEEECC
Confidence 445555 669999875 57788999999999988753
No 479
>PRK11914 diacylglycerol kinase; Reviewed
Probab=21.84 E-value=1.7e+02 Score=28.26 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred EEEEeeCCCcCCCHHhHHHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCcc
Q 010940 289 VIYACLGSICGLATWQLLELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIG 368 (497)
Q Consensus 289 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~ 368 (497)
.+.++--|-.....+....+.+.|+..+..+.+......... .-+-........++
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~-----------------------~~~a~~~~~~~~d~- 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDA-----------------------RHLVAAALAKGTDA- 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHH-----------------------HHHHHHHHhcCCCE-
Q ss_pred ccccCCCchhHHHHH----hhCCceeecc
Q 010940 369 GFLTHCGWNSTLEGV----SAGVPLVTCP 393 (497)
Q Consensus 369 ~~I~HgG~gt~~eal----~~GvP~v~iP 393 (497)
+|.-||-||+.|++ ..++|+-++|
T Consensus 68 -vvv~GGDGTi~evv~~l~~~~~~lgiiP 95 (306)
T PRK11914 68 -LVVVGGDGVISNALQVLAGTDIPLGIIP 95 (306)
T ss_pred -EEEECCchHHHHHhHHhccCCCcEEEEe
No 480
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=21.82 E-value=4.4e+02 Score=21.41 Aligned_cols=28 Identities=7% Similarity=0.047 Sum_probs=20.8
Q ss_pred eEEEEeeCCCcCCCHHhHHHHHHHHHhC
Q 010940 288 SVIYACLGSICGLATWQLLELGLGLEAS 315 (497)
Q Consensus 288 ~~V~vs~GS~~~~~~~~~~~~~~al~~~ 315 (497)
.+|+++-||......+.+..+.+.+++.
T Consensus 3 ~lvlv~hGS~~~~~~~~~~~~~~~l~~~ 30 (126)
T PRK00923 3 GLLLVGHGSRLPYNKEVVTKIAEKIKEK 30 (126)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh
Confidence 4899999997654456777788888653
No 481
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=21.82 E-value=1.1e+02 Score=31.70 Aligned_cols=46 Identities=22% Similarity=0.119 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcchhhhh
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTTRFNIT 55 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~~~~~~ 55 (497)
.+||++...++-+= +=...|.+.|+++||+|.++.++.-...+...
T Consensus 70 ~k~IllgVtGsIAa-yka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGGIAA-YKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccHHHH-HHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 46888877776554 47889999999999999999998766555543
No 482
>PRK06523 short chain dehydrogenase; Provisional
Probab=21.76 E-value=1.9e+02 Score=26.75 Aligned_cols=36 Identities=11% Similarity=-0.055 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 7 AHQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 7 ~~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
++.+++++ +.. .|- --..+|+.|.++|++|.++.-.
T Consensus 7 ~~~k~vlI-tGa-s~g--IG~~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 7 LAGKRALV-TGG-TKG--IGAATVARLLEAGARVVTTARS 42 (260)
T ss_pred CCCCEEEE-ECC-CCc--hhHHHHHHHHHCCCEEEEEeCC
Confidence 33445544 333 332 3478999999999999887643
No 483
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=21.74 E-value=1.6e+02 Score=25.47 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=26.8
Q ss_pred CCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 18 MSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 18 p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
|+.|=..-.+.||..|+++|++|.++=.+.
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 788999999999999999999999986553
No 484
>PRK10037 cell division protein; Provisional
Probab=21.65 E-value=1.3e+02 Score=28.05 Aligned_cols=36 Identities=17% Similarity=0.046 Sum_probs=30.1
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 11 HFVLIPL-MSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 11 ~il~~~~-p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
.|.+... |+.|=..-...||..|+++|++|.++=..
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3555555 88999999999999999999999998443
No 485
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.62 E-value=63 Score=30.70 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=22.3
Q ss_pred CCccccccCCCchhHHHHHh------hCCceeecc
Q 010940 365 RAIGGFLTHCGWNSTLEGVS------AGVPLVTCP 393 (497)
Q Consensus 365 ~~~~~~I~HgG~gt~~eal~------~GvP~v~iP 393 (497)
+++ +|+-||-||++.|+. .++|++.+-
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 454 999999999999976 478888774
No 486
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=21.43 E-value=1.4e+02 Score=28.83 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVT 44 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~ 44 (497)
.++|+++ ++.|-+ -..|++.|.++||+|+++.
T Consensus 5 ~k~vlVt--G~~G~I--G~~l~~~L~~~G~~V~~~~ 36 (325)
T PLN02989 5 GKVVCVT--GASGYI--ASWIVKLLLFRGYTINATV 36 (325)
T ss_pred CCEEEEE--CCchHH--HHHHHHHHHHCCCEEEEEE
Confidence 4566653 455544 5678999999999998765
No 487
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=21.36 E-value=7.4e+02 Score=23.86 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=62.4
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCCCCccccccchhHHHHhCCCCeEeccccchHHhhhcCCccccccCCCchhHHHHHhh
Q 010940 306 LELGLGLEASSQPFIWVIRGGERSQGLEKWIQEEGFEERTTGRGFIIRGWAPQVLLLSHRAIGGFLTHCGWNSTLEGVSA 385 (497)
Q Consensus 306 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~I~HgG~gt~~eal~~ 385 (497)
..+++.++..+..+++..+-..- +|+.|.......-+=+ |..+| =...|.+....|+.+
T Consensus 159 ~~~~~~l~~~~~Dlivlagym~i--------l~~~~l~~~~~~iiNi-----HpSlL--------P~f~G~~~~~~ai~~ 217 (289)
T PRK13010 159 AQILDLIETSGAELVVLARYMQV--------LSDDLSRKLSGRAINI-----HHSFL--------PGFKGARPYHQAHAR 217 (289)
T ss_pred HHHHHHHHHhCCCEEEEehhhhh--------CCHHHHhhccCCceee-----CcccC--------CCCCCCCHHHHHHHc
Confidence 34677788888888887775443 5665544332211212 23333 333589999999999
Q ss_pred CCceeeccccc--cccchHHHHHHHHcceEEeccccccccccccccccccCHHHHHHHHHHHHc
Q 010940 386 GVPLVTCPLFA--EQFYNEKLAVQVLGIGVSVGIEAAVTWGLEDKSGLVIKREKVKEAIEKLMD 447 (497)
Q Consensus 386 GvP~v~iP~~~--DQ~~na~~~~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 447 (497)
|+....+-.+. +..+.+..+ .-.-+.+... -+.++|.+.+.++--
T Consensus 218 G~k~tG~TvH~v~~~lD~GpII---~Q~~v~V~~~--------------dt~e~L~~r~~~~E~ 264 (289)
T PRK13010 218 GVKLIGATAHFVTDDLDEGPII---EQDVERVDHS--------------YSPEDLVAKGRDVEC 264 (289)
T ss_pred CCCeEEEEEEEEcCCCCCCCce---EEEEEEcCCC--------------CCHHHHHHHHHHHHH
Confidence 99998887542 344444444 2233334333 367888888776543
No 488
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=21.28 E-value=1.8e+02 Score=25.67 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
+..++++-.++.|=..=..++|.++.++|+.|.|+..+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L 86 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL 86 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce
Confidence 4678999999999888899999999999999999986643
No 489
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=21.26 E-value=4e+02 Score=25.59 Aligned_cols=20 Identities=10% Similarity=0.350 Sum_probs=15.7
Q ss_pred HhhHHHHHHHhhcCCCCcEEEe
Q 010940 105 MLKQPFEQLFDKLHPRPSCIIS 126 (497)
Q Consensus 105 ~~~~~l~~ll~~~~~~pDlvI~ 126 (497)
.....+.+++++. +||+||+
T Consensus 110 e~~~~l~~~Ir~~--~PdvViT 129 (284)
T TIGR03445 110 EAAGALVAVIREV--RPHVVVT 129 (284)
T ss_pred HHHHHHHHHHHHh--CCcEEEe
Confidence 3456677788888 9999997
No 490
>PLN02650 dihydroflavonol-4-reductase
Probab=21.25 E-value=1.4e+02 Score=29.35 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 9 QLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 9 ~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
+++|++ .++.|.+-. .|++.|.++||+|+.+.-
T Consensus 5 ~k~iLV--TGatGfIGs--~l~~~L~~~G~~V~~~~r 37 (351)
T PLN02650 5 KETVCV--TGASGFIGS--WLVMRLLERGYTVRATVR 37 (351)
T ss_pred CCEEEE--eCCcHHHHH--HHHHHHHHCCCEEEEEEc
Confidence 567776 566665544 577899999999998763
No 491
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=21.22 E-value=74 Score=25.53 Aligned_cols=37 Identities=11% Similarity=-0.089 Sum_probs=26.8
Q ss_pred HHhhhcCCccccccCC---CchhHHHH---HhhCCceeecccc
Q 010940 359 VLLLSHRAIGGFLTHC---GWNSTLEG---VSAGVPLVTCPLF 395 (497)
Q Consensus 359 ~~lL~~~~~~~~I~Hg---G~gt~~ea---l~~GvP~v~iP~~ 395 (497)
...+..+++-+++-.+ +.||..|. .+.|+|++++-.-
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 4466677776666666 88999996 6779999988643
No 492
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=21.14 E-value=1.5e+02 Score=29.95 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=31.2
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 010940 9 QLHFVLIPL--MSPGHLIPMIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 9 ~~~il~~~~--p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
+++|+.+.. |+.|=..-.+.||..|+++|++|.++=...
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 445544443 799999999999999999999999985544
No 493
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=21.14 E-value=1.4e+02 Score=26.10 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=28.5
Q ss_pred cCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Q 010940 16 PLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLNTT 50 (497)
Q Consensus 16 ~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~~~ 50 (497)
.-|+.|=..-...||..|+++|++|.++-......
T Consensus 6 ~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~ 40 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAP 40 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSH
T ss_pred CCCCccHHHHHHHHHhccccccccccccccCcccc
Confidence 34788999999999999999999999997765443
No 494
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=21.11 E-value=4.7e+02 Score=26.56 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTPLN 48 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~~~ 48 (497)
..+|++++.-+ .-.+++++.|.+-|-+|..+.++..
T Consensus 273 ~Gkrv~i~gd~-----~~~~~l~~~L~elGm~~v~~~t~~~ 308 (407)
T TIGR01279 273 RGKKIFFFGDN-----LLELPLARFLKRCGMEVVECGTPYI 308 (407)
T ss_pred CCCEEEEECCc-----hHHHHHHHHHHHCCCEEEEecCCCC
Confidence 35677775443 4567788888888999888776643
No 495
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=21.07 E-value=1.3e+02 Score=30.73 Aligned_cols=31 Identities=35% Similarity=0.429 Sum_probs=24.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 010940 10 LHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTT 45 (497)
Q Consensus 10 ~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~ 45 (497)
|+|.|+-.+..| +.+|..|+++||+|+.+-.
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 368887666666 6889999999999998854
No 496
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.03 E-value=1.4e+02 Score=27.81 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=24.0
Q ss_pred HHHHHHhhcCCCCcEEEeCCCCcc--hHH-HHHHcCCCeEEEcc
Q 010940 109 PFEQLFDKLHPRPSCIISGKNLPW--TVN-SAIKFKIPTILFDG 149 (497)
Q Consensus 109 ~l~~ll~~~~~~pDlvI~D~~~~~--~~~-~A~~lgiP~v~~~~ 149 (497)
.+++++.- +||+||....... ... +.+.+|+|++.+..
T Consensus 66 n~E~i~~l---~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 66 NYEKIAAL---KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CHHHHHhc---CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 35666543 9999998764332 122 33448999988654
No 497
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=20.93 E-value=68 Score=30.09 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=20.7
Q ss_pred ccccCCCchhHHHHHhh----CCceeecc
Q 010940 369 GFLTHCGWNSTLEGVSA----GVPLVTCP 393 (497)
Q Consensus 369 ~~I~HgG~gt~~eal~~----GvP~v~iP 393 (497)
++|+-||-||++.|+.. ++|++.|-
T Consensus 28 lvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 28 VIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred EEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 49999999999988664 67888775
No 498
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=20.91 E-value=1.2e+02 Score=27.99 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=23.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 11 HFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 11 ~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+|+++--+-.| ..||+.|.+.||+|+.+-..
T Consensus 2 ~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 2 KIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred EEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 45555444333 68999999999999998754
No 499
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.90 E-value=85 Score=23.71 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCCC
Q 010940 26 MIDMARLLAEHGIKVTIVTTPL 47 (497)
Q Consensus 26 ~l~LA~~L~~rGH~Vt~~~~~~ 47 (497)
+-.+.+.|+++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999888664
No 500
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.89 E-value=1.4e+02 Score=27.06 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 010940 8 HQLHFVLIPLMSPGHLIPMIDMARLLAEHGIKVTIVTTP 46 (497)
Q Consensus 8 ~~~~il~~~~p~~GHi~P~l~LA~~L~~rGH~Vt~~~~~ 46 (497)
+..+|+++-.+..| ...++.|.++|++|+++.+.
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 45688887776555 67889999999999999865
Done!