Query 010942
Match_columns 497
No_of_seqs 249 out of 2032
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02744 dihydrolipoyllysine-r 100.0 3E-107 6E-112 874.1 42.0 484 2-497 1-489 (539)
2 KOG0557 Dihydrolipoamide acety 100.0 5E-84 1.1E-88 666.2 30.0 392 100-496 20-418 (470)
3 TIGR02927 SucB_Actino 2-oxoglu 100.0 5.8E-82 1.3E-86 691.3 38.4 380 116-497 133-534 (590)
4 PRK05704 dihydrolipoamide succ 100.0 1.4E-81 3E-86 661.1 38.0 352 119-497 3-357 (407)
5 TIGR01347 sucB 2-oxoglutarate 100.0 3.3E-81 7.1E-86 657.2 38.2 351 119-497 1-353 (403)
6 TIGR01349 PDHac_trf_mito pyruv 100.0 3E-78 6.5E-83 641.0 37.6 371 120-497 1-384 (435)
7 TIGR01348 PDHac_trf_long pyruv 100.0 1.1E-77 2.4E-82 652.9 37.7 366 119-497 117-498 (546)
8 PLN02528 2-oxoisovalerate dehy 100.0 9.1E-77 2E-81 626.5 36.5 349 121-497 1-364 (416)
9 COG0508 AceF Pyruvate/2-oxoglu 100.0 3.8E-77 8.3E-82 627.0 32.7 352 118-497 2-355 (404)
10 PRK11854 aceF pyruvate dehydro 100.0 1.4E-72 3.1E-77 622.7 37.6 363 118-497 206-585 (633)
11 PLN02226 2-oxoglutarate dehydr 100.0 2E-72 4.3E-77 593.9 35.5 347 94-497 66-413 (463)
12 PTZ00144 dihydrolipoamide succ 100.0 1.6E-70 3.4E-75 575.6 34.4 325 118-497 44-368 (418)
13 PRK11855 dihydrolipoamide acet 100.0 2.6E-70 5.5E-75 596.7 37.0 363 119-497 120-499 (547)
14 PRK11856 branched-chain alpha- 100.0 1.6E-68 3.5E-73 564.7 38.0 358 119-497 3-362 (411)
15 KOG0558 Dihydrolipoamide trans 100.0 1.8E-67 3.8E-72 523.0 22.0 350 115-497 61-422 (474)
16 KOG0559 Dihydrolipoamide succi 100.0 3.9E-65 8.4E-70 508.6 21.4 336 118-497 72-407 (457)
17 PRK14843 dihydrolipoamide acet 100.0 6E-63 1.3E-67 509.7 22.3 245 252-497 46-299 (347)
18 PRK11857 dihydrolipoamide acet 100.0 2.6E-62 5.6E-67 497.3 22.9 242 255-497 2-257 (306)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 1.1E-49 2.3E-54 391.1 16.5 180 316-497 3-183 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 5.1E-42 1.1E-46 377.7 25.0 179 317-497 115-302 (1228)
21 PRK14875 acetoin dehydrogenase 99.7 9.5E-18 2.1E-22 172.4 12.6 77 118-195 2-78 (371)
22 PF00364 Biotin_lipoyl: Biotin 99.7 7.7E-18 1.7E-22 137.3 8.6 74 119-193 1-74 (74)
23 PRK06748 hypothetical protein; 99.6 8.5E-16 1.8E-20 127.7 9.9 63 131-194 11-74 (83)
24 PRK11892 pyruvate dehydrogenas 99.6 8.9E-15 1.9E-19 157.1 15.7 83 119-201 3-85 (464)
25 PRK05889 putative acetyl-CoA c 99.5 1.6E-13 3.5E-18 110.8 9.6 62 131-193 9-70 (71)
26 cd06663 Biotinyl_lipoyl_domain 99.5 3.3E-13 7.1E-18 108.9 10.1 72 121-193 2-73 (73)
27 PRK11854 aceF pyruvate dehydro 99.4 3.8E-13 8.3E-18 150.0 11.5 75 119-196 3-77 (633)
28 TIGR02927 SucB_Actino 2-oxoglu 99.4 4.7E-13 1E-17 148.0 10.9 78 119-197 3-80 (590)
29 COG0511 AccB Biotin carboxyl c 99.4 5.7E-13 1.2E-17 121.7 8.2 62 131-193 77-138 (140)
30 PRK08225 acetyl-CoA carboxylas 99.4 2.9E-12 6.3E-17 103.0 9.0 61 132-193 9-69 (70)
31 PF02817 E3_binding: e3 bindin 99.3 7.5E-13 1.6E-17 94.8 3.3 38 254-291 2-39 (39)
32 PRK11855 dihydrolipoamide acet 99.3 9.9E-12 2.1E-16 136.7 11.2 76 119-196 3-78 (547)
33 PRK06549 acetyl-CoA carboxylas 99.3 1.6E-11 3.5E-16 110.6 9.3 62 131-193 68-129 (130)
34 TIGR01348 PDHac_trf_long pyruv 99.2 2.7E-11 5.8E-16 133.1 10.5 74 120-195 2-75 (546)
35 PRK05641 putative acetyl-CoA c 99.2 4.1E-11 8.8E-16 110.9 9.0 62 131-193 91-152 (153)
36 PRK07051 hypothetical protein; 99.2 7.6E-11 1.7E-15 97.5 9.2 62 132-194 11-79 (80)
37 cd06850 biotinyl_domain The bi 99.2 1.1E-10 2.4E-15 91.5 9.2 62 131-193 6-67 (67)
38 PLN02983 biotin carboxyl carri 99.2 9.1E-11 2E-15 115.9 8.8 61 132-193 205-272 (274)
39 TIGR00531 BCCP acetyl-CoA carb 99.2 1E-10 2.2E-15 108.8 8.6 61 132-193 88-155 (156)
40 PRK06302 acetyl-CoA carboxylas 99.1 2.2E-10 4.8E-15 106.4 8.7 60 133-193 88-154 (155)
41 cd06849 lipoyl_domain Lipoyl d 99.1 8.9E-10 1.9E-14 85.9 10.9 73 120-193 2-74 (74)
42 PRK14042 pyruvate carboxylase 99.0 5.2E-10 1.1E-14 123.4 9.8 63 131-194 532-594 (596)
43 TIGR02712 urea_carbox urea car 98.9 2.1E-09 4.6E-14 127.5 9.6 62 131-193 1139-1200(1201)
44 TIGR01108 oadA oxaloacetate de 98.9 2.3E-09 4.9E-14 118.5 7.8 59 131-190 524-582 (582)
45 PRK14040 oxaloacetate decarbox 98.9 5.5E-09 1.2E-13 115.7 9.5 62 131-193 531-592 (593)
46 TIGR01235 pyruv_carbox pyruvat 98.8 7.8E-09 1.7E-13 121.8 9.3 62 131-193 1081-1142(1143)
47 PRK09282 pyruvate carboxylase 98.7 3.8E-08 8.1E-13 109.2 9.1 62 131-193 529-590 (592)
48 PRK12999 pyruvate carboxylase; 98.6 1E-07 2.2E-12 112.8 9.1 61 132-193 1084-1144(1146)
49 COG4770 Acetyl/propionyl-CoA c 98.5 1.6E-07 3.5E-12 101.0 7.5 63 131-194 582-644 (645)
50 COG1038 PycA Pyruvate carboxyl 98.4 6.2E-07 1.4E-11 99.4 6.8 60 133-193 1088-1147(1149)
51 cd06848 GCS_H Glycine cleavage 98.2 2.5E-06 5.4E-11 72.9 6.0 62 119-181 16-78 (96)
52 KOG0369 Pyruvate carboxylase [ 98.0 6.9E-06 1.5E-10 89.7 6.6 62 131-193 1113-1174(1176)
53 TIGR03077 not_gcvH glycine cle 98.0 1.7E-05 3.7E-10 69.7 6.3 48 133-180 30-78 (110)
54 PRK00624 glycine cleavage syst 97.8 3.6E-05 7.8E-10 68.1 6.3 44 133-176 32-76 (114)
55 PF00302 CAT: Chloramphenicol 97.8 0.00042 9E-09 67.5 13.9 143 338-495 23-175 (206)
56 KOG0238 3-Methylcrotonyl-CoA c 97.8 7.6E-05 1.6E-09 79.8 9.0 61 132-193 609-669 (670)
57 PRK13380 glycine cleavage syst 97.7 7.1E-05 1.5E-09 68.9 6.0 60 120-180 32-92 (144)
58 TIGR00998 8a0101 efflux pump m 97.6 0.0002 4.3E-09 73.7 8.1 35 162-197 205-239 (334)
59 KOG0368 Acetyl-CoA carboxylase 97.6 0.00012 2.6E-09 85.8 6.9 66 129-196 690-755 (2196)
60 PRK14843 dihydrolipoamide acet 97.6 4.2E-05 9.1E-10 80.0 2.8 42 253-294 4-45 (347)
61 PRK09783 copper/silver efflux 97.5 0.00032 7E-09 74.9 9.5 66 131-197 130-244 (409)
62 PRK13757 chloramphenicol acety 97.5 0.0012 2.7E-08 64.8 12.3 115 341-466 31-147 (219)
63 TIGR01730 RND_mfp RND family e 97.5 0.00018 3.9E-09 73.0 6.4 66 131-197 33-169 (322)
64 PRK10559 p-hydroxybenzoic acid 97.5 0.00027 5.9E-09 72.7 7.5 66 131-197 54-189 (310)
65 PRK10476 multidrug resistance 97.4 0.00042 9.1E-09 72.1 7.4 35 162-197 209-243 (346)
66 PRK01202 glycine cleavage syst 97.3 0.0004 8.7E-09 62.6 5.9 43 133-175 37-80 (127)
67 TIGR00527 gcvH glycine cleavag 97.2 0.00042 9E-09 62.5 4.9 46 133-178 36-82 (127)
68 PRK15136 multidrug efflux syst 97.2 0.00073 1.6E-08 71.8 7.3 35 162-197 216-250 (390)
69 PRK03598 putative efflux pump 97.1 0.00084 1.8E-08 69.4 6.7 34 162-196 204-237 (331)
70 PRK09578 periplasmic multidrug 97.1 0.0012 2.6E-08 69.8 7.2 65 131-196 70-207 (385)
71 PF13533 Biotin_lipoyl_2: Biot 96.9 0.00096 2.1E-08 50.3 3.5 30 131-160 9-38 (50)
72 PF01597 GCV_H: Glycine cleava 96.9 0.0022 4.7E-08 57.4 6.3 44 133-176 31-75 (122)
73 PRK09859 multidrug efflux syst 96.9 0.0024 5.2E-08 67.5 7.6 66 131-197 68-206 (385)
74 PF13533 Biotin_lipoyl_2: Biot 96.8 0.0021 4.5E-08 48.5 4.6 34 161-195 2-35 (50)
75 PRK15030 multidrug efflux syst 96.8 0.0029 6.2E-08 67.3 7.5 65 131-196 72-209 (397)
76 PRK11578 macrolide transporter 96.7 0.0038 8.3E-08 65.5 7.5 28 131-158 68-95 (370)
77 PRK11556 multidrug efflux syst 96.7 0.0036 7.8E-08 67.1 6.9 64 131-195 94-230 (415)
78 PRK12784 hypothetical protein; 96.5 0.016 3.6E-07 47.4 7.9 64 131-195 12-76 (84)
79 COG0509 GcvH Glycine cleavage 96.4 0.005 1.1E-07 55.6 5.0 44 133-176 39-83 (131)
80 TIGR02971 heterocyst_DevB ABC 96.4 0.0075 1.6E-07 62.0 6.9 26 133-158 25-50 (327)
81 PF12700 HlyD_2: HlyD family s 96.2 0.0038 8.2E-08 63.5 3.6 26 131-157 28-53 (328)
82 TIGR03309 matur_yqeB selenium- 96.1 0.017 3.7E-07 57.8 7.5 55 132-193 172-226 (256)
83 COG4845 Chloramphenicol O-acet 95.9 0.055 1.2E-06 52.3 9.5 103 338-451 26-129 (219)
84 TIGR01843 type_I_hlyD type I s 95.4 0.049 1.1E-06 57.5 8.1 34 163-197 273-307 (423)
85 PRK05889 putative acetyl-CoA c 95.3 0.035 7.7E-07 44.6 5.2 33 163-196 4-36 (71)
86 PF13375 RnfC_N: RnfC Barrel s 95.3 0.028 6.1E-07 48.7 4.8 46 132-178 38-83 (101)
87 PRK08225 acetyl-CoA carboxylas 95.0 0.032 6.8E-07 44.6 4.0 26 131-156 45-70 (70)
88 cd06253 M14_ASTE_ASPA_like_3 A 95.0 0.081 1.8E-06 54.3 8.1 58 133-193 237-297 (298)
89 cd06251 M14_ASTE_ASPA_like_1 A 94.7 0.11 2.3E-06 53.1 8.0 58 133-193 227-286 (287)
90 cd06250 M14_PaAOTO_like An unc 94.7 0.095 2.1E-06 55.3 7.7 59 132-193 296-358 (359)
91 PRK06748 hypothetical protein; 94.2 0.075 1.6E-06 44.5 4.5 30 130-159 48-77 (83)
92 cd06252 M14_ASTE_ASPA_like_2 A 94.1 0.2 4.3E-06 51.9 8.4 59 133-194 252-314 (316)
93 TIGR02994 ectoine_eutE ectoine 93.9 0.17 3.7E-06 52.7 7.6 58 133-193 263-324 (325)
94 COG3608 Predicted deacylase [G 93.5 0.21 4.6E-06 51.9 7.3 62 131-195 262-326 (331)
95 COG0511 AccB Biotin carboxyl c 93.5 0.11 2.5E-06 47.5 4.8 36 160-196 69-104 (140)
96 KOG0559 Dihydrolipoamide succi 93.5 0.68 1.5E-05 48.4 10.8 68 86-158 77-149 (457)
97 cd06850 biotinyl_domain The bi 93.1 0.16 3.5E-06 39.1 4.5 30 164-194 2-31 (67)
98 PF13437 HlyD_3: HlyD family s 93.0 0.15 3.3E-06 43.3 4.6 32 164-196 2-33 (105)
99 PF05896 NQRA: Na(+)-transloca 92.4 0.14 3E-06 51.5 4.1 48 123-177 32-81 (257)
100 PRK07051 hypothetical protein; 92.2 0.2 4.2E-06 41.3 4.1 27 130-156 53-79 (80)
101 cd06254 M14_ASTE_ASPA_like_4 A 92.0 0.35 7.7E-06 49.3 6.6 56 132-190 230-287 (288)
102 PRK06549 acetyl-CoA carboxylas 90.8 0.44 9.5E-06 43.3 5.2 34 161-195 61-94 (130)
103 PF09891 DUF2118: Uncharacteri 90.8 0.43 9.3E-06 44.3 5.1 46 131-176 87-133 (150)
104 TIGR01936 nqrA NADH:ubiquinone 90.5 0.27 5.8E-06 53.4 4.0 45 132-177 37-81 (447)
105 TIGR00998 8a0101 efflux pump m 90.2 0.39 8.3E-06 49.4 4.8 33 161-194 42-74 (334)
106 PRK10476 multidrug resistance 89.9 0.55 1.2E-05 48.9 5.7 39 153-194 42-80 (346)
107 PF00529 HlyD: HlyD family sec 89.8 0.31 6.7E-06 48.9 3.6 33 162-195 2-34 (305)
108 PF00364 Biotin_lipoyl: Biotin 89.5 0.6 1.3E-05 37.8 4.4 34 163-197 2-41 (74)
109 PRK05641 putative acetyl-CoA c 89.3 0.63 1.4E-05 43.4 5.0 33 162-195 85-117 (153)
110 TIGR02971 heterocyst_DevB ABC 88.9 0.64 1.4E-05 47.8 5.3 42 153-195 5-49 (327)
111 PRK05352 Na(+)-translocating N 88.9 0.38 8.3E-06 52.3 3.8 44 132-176 38-81 (448)
112 PF00529 HlyD: HlyD family sec 88.6 0.32 6.9E-06 48.9 2.7 30 131-160 8-37 (305)
113 TIGR01235 pyruv_carbox pyruvat 87.7 1.1 2.4E-05 54.2 6.8 62 133-196 1047-1108(1143)
114 TIGR01945 rnfC electron transp 87.4 0.59 1.3E-05 50.6 4.1 43 133-176 40-82 (435)
115 TIGR01730 RND_mfp RND family e 87.4 0.99 2.1E-05 45.6 5.5 39 154-194 20-58 (322)
116 PF07831 PYNP_C: Pyrimidine nu 87.2 0.54 1.2E-05 38.6 2.8 30 130-159 28-57 (75)
117 PRK11556 multidrug efflux syst 87.0 1.1 2.4E-05 48.0 5.9 58 136-195 63-120 (415)
118 PRK09859 multidrug efflux syst 86.8 1.3 2.8E-05 46.8 6.2 54 139-194 40-93 (385)
119 PRK11578 macrolide transporter 86.7 1.4 3E-05 46.3 6.4 57 135-193 36-92 (370)
120 TIGR01000 bacteriocin_acc bact 86.7 1.1 2.5E-05 48.5 5.8 40 155-195 53-92 (457)
121 cd06255 M14_ASTE_ASPA_like_5 A 86.7 2 4.3E-05 44.0 7.3 42 134-175 240-283 (293)
122 TIGR01843 type_I_hlyD type I s 86.3 1.2 2.6E-05 47.0 5.6 42 153-195 35-76 (423)
123 PF12700 HlyD_2: HlyD family s 86.0 0.78 1.7E-05 46.5 3.9 40 152-195 14-53 (328)
124 KOG3373 Glycine cleavage syste 85.6 0.52 1.1E-05 44.1 2.1 40 141-180 89-128 (172)
125 PRK09578 periplasmic multidrug 84.9 1.8 4E-05 45.7 6.2 54 139-194 42-95 (385)
126 TIGR03794 NHPM_micro_HlyD NHPM 84.9 1.4 3.1E-05 47.2 5.4 36 159-195 56-91 (421)
127 TIGR00531 BCCP acetyl-CoA carb 84.7 0.96 2.1E-05 42.2 3.5 28 129-156 129-156 (156)
128 TIGR00999 8a0102 Membrane Fusi 84.7 1.4 3E-05 43.5 4.8 36 161-197 88-123 (265)
129 PRK03598 putative efflux pump 84.4 1.4 2.9E-05 45.6 4.8 33 161-194 43-75 (331)
130 PRK10559 p-hydroxybenzoic acid 84.3 1.2 2.7E-05 45.8 4.4 33 162-195 48-80 (310)
131 PRK15136 multidrug efflux syst 84.1 1.2 2.7E-05 47.3 4.5 34 161-195 61-94 (390)
132 PRK06302 acetyl-CoA carboxylas 84.1 1.1 2.4E-05 41.7 3.6 27 130-156 129-155 (155)
133 COG1726 NqrA Na+-transporting 83.4 1.3 2.8E-05 46.5 4.0 40 137-179 42-83 (447)
134 PLN02226 2-oxoglutarate dehydr 83.3 1.2 2.7E-05 48.5 4.1 29 130-158 140-168 (463)
135 PF04952 AstE_AspA: Succinylgl 83.3 3.5 7.6E-05 41.6 7.2 59 133-194 228-290 (292)
136 COG4656 RnfC Predicted NADH:ub 82.6 1.1 2.3E-05 49.2 3.3 39 136-176 45-83 (529)
137 PRK05035 electron transport co 82.3 1.1 2.4E-05 51.3 3.4 43 133-176 46-88 (695)
138 PF13437 HlyD_3: HlyD family s 82.2 2.7 5.9E-05 35.6 5.0 28 131-158 6-33 (105)
139 PLN02983 biotin carboxyl carri 81.9 1.5 3.2E-05 44.4 3.7 26 131-156 248-273 (274)
140 TIGR03794 NHPM_micro_HlyD NHPM 81.5 1.4 3E-05 47.2 3.7 30 131-160 65-94 (421)
141 PF02749 QRPTase_N: Quinolinat 80.8 1.4 3.1E-05 36.9 2.7 25 133-157 44-68 (88)
142 PRK15030 multidrug efflux syst 79.3 2.4 5.2E-05 45.1 4.5 43 150-194 55-97 (397)
143 PRK14042 pyruvate carboxylase 78.3 2.9 6.4E-05 47.1 5.0 34 162-196 526-559 (596)
144 TIGR01000 bacteriocin_acc bact 77.9 2 4.4E-05 46.6 3.6 33 130-162 65-97 (457)
145 PRK09439 PTS system glucose-sp 77.8 5.5 0.00012 37.8 6.0 18 175-193 106-123 (169)
146 COG0845 AcrA Membrane-fusion p 77.7 6.3 0.00014 39.6 6.9 46 148-195 54-99 (372)
147 PRK09783 copper/silver efflux 77.6 5.1 0.00011 43.0 6.4 53 141-194 102-156 (409)
148 PF07247 AATase: Alcohol acety 77.5 17 0.00037 39.2 10.6 40 344-390 251-290 (480)
149 PRK14875 acetoin dehydrogenase 75.2 3.6 7.9E-05 42.1 4.4 29 131-159 52-80 (371)
150 cd00210 PTS_IIA_glc PTS_IIA, P 75.0 8.1 0.00018 34.8 6.0 21 172-193 81-101 (124)
151 COG4072 Uncharacterized protei 74.8 6.3 0.00014 36.0 5.2 46 131-176 98-144 (161)
152 TIGR01108 oadA oxaloacetate de 74.8 4.2 9.1E-05 45.8 5.0 35 162-197 518-552 (582)
153 COG1566 EmrA Multidrug resista 74.7 3.4 7.5E-05 43.6 4.1 34 163-197 210-243 (352)
154 COG0845 AcrA Membrane-fusion p 74.3 2.9 6.4E-05 42.0 3.4 27 131-157 73-99 (372)
155 PF00358 PTS_EIIA_1: phosphoen 73.8 6.7 0.00015 35.7 5.2 17 176-193 89-105 (132)
156 PTZ00144 dihydrolipoamide succ 73.6 3.7 8.1E-05 44.3 4.1 30 130-159 93-122 (418)
157 TIGR00164 PS_decarb_rel phosph 73.5 7.8 0.00017 37.2 5.9 53 133-191 130-182 (189)
158 TIGR00830 PTBA PTS system, glu 72.8 9.5 0.00021 34.2 5.8 20 173-193 82-101 (121)
159 cd06663 Biotinyl_lipoyl_domain 72.7 4.4 9.5E-05 32.1 3.4 25 131-155 49-73 (73)
160 PRK05704 dihydrolipoamide succ 72.4 4.5 9.7E-05 43.6 4.4 31 129-159 50-80 (407)
161 TIGR01347 sucB 2-oxoglutarate 71.9 4.7 0.0001 43.4 4.4 30 129-158 48-77 (403)
162 COG2190 NagE Phosphotransferas 71.6 8.6 0.00019 36.0 5.4 23 170-193 86-108 (156)
163 PRK09439 PTS system glucose-sp 71.4 7.4 0.00016 36.9 5.1 29 132-160 100-128 (169)
164 cd00210 PTS_IIA_glc PTS_IIA, P 71.4 3.7 8E-05 37.0 2.9 27 132-158 78-104 (124)
165 PRK14040 oxaloacetate decarbox 71.3 5.5 0.00012 44.9 4.9 34 161-195 524-557 (593)
166 cd06849 lipoyl_domain Lipoyl d 71.3 4.8 0.0001 30.2 3.2 24 132-155 51-74 (74)
167 TIGR00830 PTBA PTS system, glu 70.3 4 8.6E-05 36.6 2.8 28 132-159 78-105 (121)
168 COG0508 AceF Pyruvate/2-oxoglu 70.2 5.3 0.00012 42.9 4.3 39 118-160 43-81 (404)
169 COG2190 NagE Phosphotransferas 70.0 15 0.00033 34.4 6.7 29 132-160 85-113 (156)
170 PLN02528 2-oxoisovalerate dehy 69.0 6.1 0.00013 42.7 4.4 31 129-159 46-76 (416)
171 PRK05305 phosphatidylserine de 68.8 11 0.00023 36.7 5.8 55 132-192 149-204 (206)
172 COG4770 Acetyl/propionyl-CoA c 68.5 6.3 0.00014 43.9 4.4 34 162-196 576-609 (645)
173 PRK09282 pyruvate carboxylase 68.0 7.3 0.00016 44.0 5.0 34 161-195 522-555 (592)
174 PF02666 PS_Dcarbxylase: Phosp 67.9 9.5 0.00021 36.8 5.2 68 121-192 134-202 (202)
175 PF00358 PTS_EIIA_1: phosphoen 64.7 4.3 9.4E-05 36.9 2.0 28 132-159 82-109 (132)
176 COG1566 EmrA Multidrug resista 64.7 8.3 0.00018 40.8 4.3 35 161-196 53-87 (352)
177 TIGR02712 urea_carbox urea car 64.3 8.5 0.00019 47.0 4.9 35 161-196 1132-1166(1201)
178 TIGR01995 PTS-II-ABC-beta PTS 62.4 9.8 0.00021 43.1 4.7 29 132-160 542-570 (610)
179 TIGR01349 PDHac_trf_mito pyruv 61.3 10 0.00023 41.1 4.5 30 130-159 48-78 (435)
180 TIGR02645 ARCH_P_rylase putati 57.9 17 0.00037 40.1 5.4 43 153-196 405-471 (493)
181 PRK12999 pyruvate carboxylase; 57.3 13 0.00029 45.2 4.8 33 162-195 1077-1109(1146)
182 COG0157 NadC Nicotinate-nucleo 57.1 11 0.00023 38.6 3.4 24 134-157 64-87 (280)
183 PRK12784 hypothetical protein; 56.4 17 0.00036 30.2 3.8 29 132-160 51-79 (84)
184 PRK11892 pyruvate dehydrogenas 55.2 14 0.00031 40.5 4.3 31 129-159 50-81 (464)
185 COG1155 NtpA Archaeal/vacuolar 54.8 27 0.00058 38.8 6.1 57 140-198 122-180 (588)
186 PRK09824 PTS system beta-gluco 53.9 25 0.00054 40.1 6.0 28 132-159 558-585 (627)
187 TIGR02946 acyl_WS_DGAT acyltra 53.4 1.4E+02 0.0031 31.8 11.5 89 345-450 232-331 (446)
188 PRK03934 phosphatidylserine de 52.8 23 0.0005 35.9 5.1 55 134-193 211-265 (265)
189 PRK14844 bifunctional DNA-dire 52.5 22 0.00048 46.4 5.7 20 137-156 2423-2442(2836)
190 PRK10255 PTS system N-acetyl g 51.8 34 0.00073 39.2 6.6 58 132-193 506-601 (648)
191 PRK11856 branched-chain alpha- 50.0 21 0.00046 38.2 4.5 31 130-160 51-81 (411)
192 PF01551 Peptidase_M23: Peptid 49.7 32 0.00069 28.6 4.7 56 130-195 19-74 (96)
193 PRK04350 thymidine phosphoryla 48.6 29 0.00063 38.3 5.3 42 154-196 398-463 (490)
194 TIGR03327 AMP_phos AMP phospho 48.4 28 0.00062 38.5 5.2 41 155-196 408-472 (500)
195 TIGR02643 T_phosphoryl thymidi 48.3 28 0.00061 37.9 5.1 39 157-196 335-404 (437)
196 cd01572 QPRTase Quinolinate ph 47.6 22 0.00047 36.1 4.0 26 132-157 56-81 (268)
197 cd01134 V_A-ATPase_A V/A-type 47.5 44 0.00095 35.6 6.2 54 139-195 54-110 (369)
198 PRK08072 nicotinate-nucleotide 47.2 20 0.00044 36.6 3.7 23 135-157 65-87 (277)
199 TIGR03309 matur_yqeB selenium- 47.1 24 0.00051 35.8 4.0 33 161-195 164-196 (256)
200 TIGR02644 Y_phosphoryl pyrimid 47.0 32 0.0007 37.1 5.3 41 155-196 327-398 (405)
201 PLN02744 dihydrolipoyllysine-r 46.2 22 0.00047 39.8 3.9 29 130-158 161-190 (539)
202 TIGR01042 V-ATPase_V1_A V-type 46.1 40 0.00086 38.1 5.9 54 139-195 123-179 (591)
203 PRK05820 deoA thymidine phosph 44.2 36 0.00077 37.2 5.1 39 157-196 336-405 (440)
204 cd06255 M14_ASTE_ASPA_like_5 A 44.1 34 0.00074 35.0 4.8 35 161-197 231-265 (293)
205 PRK06543 nicotinate-nucleotide 44.1 24 0.00053 36.2 3.7 24 134-157 65-88 (281)
206 cd06253 M14_ASTE_ASPA_like_3 A 44.1 28 0.00061 35.8 4.2 34 161-196 229-262 (298)
207 cd06251 M14_ASTE_ASPA_like_1 A 43.9 35 0.00076 34.8 4.8 35 160-196 218-252 (287)
208 TIGR02643 T_phosphoryl thymidi 43.7 19 0.0004 39.2 2.9 28 130-157 376-403 (437)
209 PRK06078 pyrimidine-nucleoside 43.3 37 0.0008 37.0 5.1 41 155-196 329-400 (434)
210 cd01573 modD_like ModD; Quinol 43.2 25 0.00055 35.7 3.7 24 134-157 56-79 (272)
211 PRK05820 deoA thymidine phosph 43.1 19 0.00042 39.2 2.9 30 128-157 375-404 (440)
212 PRK06096 molybdenum transport 42.7 26 0.00057 36.0 3.7 24 134-157 61-84 (284)
213 PRK05742 nicotinate-nucleotide 42.5 27 0.00057 35.8 3.7 23 135-157 67-89 (277)
214 PRK03140 phosphatidylserine de 42.2 30 0.00066 34.9 4.0 56 133-192 202-257 (259)
215 cd06254 M14_ASTE_ASPA_like_4 A 42.1 34 0.00074 34.8 4.4 37 159-197 221-257 (288)
216 PRK07428 nicotinate-nucleotide 41.9 28 0.0006 35.9 3.7 24 134-157 72-95 (288)
217 KOG0369 Pyruvate carboxylase [ 41.5 22 0.00048 40.5 3.1 33 164-197 1109-1141(1176)
218 cd01568 QPRTase_NadC Quinolina 41.2 28 0.00061 35.3 3.6 25 133-157 56-80 (269)
219 PRK09824 PTS system beta-gluco 41.1 46 0.00099 38.0 5.6 58 131-193 485-581 (627)
220 PRK09016 quinolinate phosphori 41.0 29 0.00063 35.9 3.7 24 134-157 85-108 (296)
221 cd06250 M14_PaAOTO_like An unc 41.0 40 0.00086 35.7 4.8 34 162-197 290-323 (359)
222 PRK06978 nicotinate-nucleotide 40.9 29 0.00064 35.8 3.7 24 134-157 82-105 (294)
223 TIGR01995 PTS-II-ABC-beta PTS 40.4 50 0.0011 37.5 5.8 57 132-193 470-565 (610)
224 PRK07896 nicotinate-nucleotide 40.3 30 0.00066 35.6 3.7 24 134-157 76-99 (289)
225 TIGR02645 ARCH_P_rylase putati 40.2 26 0.00056 38.7 3.3 32 126-157 439-470 (493)
226 COG1038 PycA Pyruvate carboxyl 40.2 46 0.00099 38.9 5.3 31 164-195 1082-1112(1149)
227 PRK09294 acyltransferase PapA5 40.0 4.2E+02 0.0091 27.9 12.5 90 372-472 229-346 (416)
228 PLN02716 nicotinate-nucleotide 39.9 29 0.00062 36.1 3.5 24 134-157 78-101 (308)
229 cd06252 M14_ASTE_ASPA_like_2 A 39.6 54 0.0012 33.9 5.5 36 159-196 242-277 (316)
230 PRK06078 pyrimidine-nucleoside 39.3 24 0.00052 38.4 2.9 30 130-159 372-401 (434)
231 PRK05848 nicotinate-nucleotide 39.2 32 0.0007 35.1 3.7 23 135-157 59-81 (273)
232 COG4072 Uncharacterized protei 39.2 61 0.0013 29.8 5.0 43 145-199 86-128 (161)
233 TIGR02994 ectoine_eutE ectoine 39.2 39 0.00085 35.3 4.4 33 161-195 255-287 (325)
234 PRK04350 thymidine phosphoryla 38.8 28 0.00062 38.4 3.4 32 126-157 431-462 (490)
235 PRK10255 PTS system N-acetyl g 38.8 42 0.00091 38.5 4.8 29 132-160 578-606 (648)
236 TIGR02644 Y_phosphoryl pyrimid 38.7 26 0.00056 37.8 3.0 28 130-157 370-397 (405)
237 TIGR01334 modD putative molybd 38.1 34 0.00075 35.0 3.7 24 134-157 60-83 (277)
238 PRK06106 nicotinate-nucleotide 37.8 35 0.00076 35.0 3.7 25 133-157 69-93 (281)
239 PRK08385 nicotinate-nucleotide 37.7 35 0.00076 34.9 3.7 24 134-157 58-81 (278)
240 PF01551 Peptidase_M23: Peptid 37.6 29 0.00063 28.9 2.6 25 134-158 51-75 (96)
241 TIGR03327 AMP_phos AMP phospho 37.3 30 0.00065 38.3 3.3 32 126-157 440-471 (500)
242 TIGR00078 nadC nicotinate-nucl 36.9 35 0.00075 34.6 3.5 22 136-157 56-77 (265)
243 TIGR00999 8a0102 Membrane Fusi 36.8 52 0.0011 32.3 4.7 26 131-156 95-120 (265)
244 TIGR00163 PS_decarb phosphatid 36.4 38 0.00082 33.7 3.6 48 143-192 189-236 (238)
245 PRK04192 V-type ATP synthase s 36.0 75 0.0016 36.0 6.2 57 139-198 123-182 (586)
246 PF06898 YqfD: Putative stage 35.4 47 0.001 35.4 4.4 23 131-153 196-225 (385)
247 PF06898 YqfD: Putative stage 35.1 60 0.0013 34.6 5.1 53 131-191 166-225 (385)
248 COG0213 DeoA Thymidine phospho 34.7 69 0.0015 34.7 5.3 43 154-197 329-402 (435)
249 KOG0238 3-Methylcrotonyl-CoA c 34.2 34 0.00073 38.0 3.0 32 164-196 604-635 (670)
250 PF09891 DUF2118: Uncharacteri 34.0 50 0.0011 30.8 3.7 45 144-200 74-118 (150)
251 PRK00044 psd phosphatidylserin 33.0 49 0.0011 33.9 3.9 58 134-194 224-286 (288)
252 TIGR01043 ATP_syn_A_arch ATP s 32.2 91 0.002 35.3 6.0 53 140-195 121-176 (578)
253 TIGR02876 spore_yqfD sporulati 30.6 72 0.0016 34.1 4.8 47 139-185 208-254 (382)
254 PRK11536 6-N-hydroxylaminopuri 29.2 47 0.001 33.0 2.9 71 120-193 78-163 (223)
255 PF07831 PYNP_C: Pyrimidine nu 28.6 75 0.0016 26.0 3.5 29 167-198 30-58 (75)
256 CHL00117 rpoC2 RNA polymerase 28.5 63 0.0014 40.1 4.3 36 137-172 405-448 (1364)
257 cd06910 M14_ASTE_ASPA_like_7 A 28.0 89 0.0019 31.6 4.7 28 141-172 227-255 (272)
258 PF05896 NQRA: Na(+)-transloca 27.8 47 0.001 33.7 2.6 30 162-192 30-59 (257)
259 COG2258 Uncharacterized protei 27.5 59 0.0013 32.0 3.2 70 121-193 76-160 (210)
260 KOG1668 Elongation factor 1 be 27.2 34 0.00074 34.1 1.5 28 136-163 180-207 (231)
261 COG3608 Predicted deacylase [G 27.1 1.1E+02 0.0024 32.2 5.2 43 150-196 247-289 (331)
262 PRK06559 nicotinate-nucleotide 26.6 68 0.0015 33.1 3.6 25 133-157 70-96 (290)
263 PRK08662 nicotinate phosphorib 26.3 66 0.0014 33.9 3.5 25 132-158 69-93 (343)
264 PF13375 RnfC_N: RnfC Barrel s 25.0 1.3E+02 0.0027 26.1 4.5 46 146-193 15-61 (101)
265 PRK14698 V-type ATP synthase s 24.4 1.6E+02 0.0034 35.8 6.5 69 120-197 106-181 (1017)
266 KOG0368 Acetyl-CoA carboxylase 24.2 95 0.0021 38.8 4.6 51 142-193 666-716 (2196)
267 KOG0557 Dihydrolipoamide acety 23.4 75 0.0016 34.8 3.3 30 167-197 50-79 (470)
268 PRK10871 nlpD lipoprotein NlpD 23.1 48 0.001 34.7 1.7 20 175-195 272-291 (319)
269 PF02749 QRPTase_N: Quinolinat 22.9 1.7E+02 0.0037 24.3 4.8 36 159-195 17-68 (88)
270 COG0213 DeoA Thymidine phospho 22.5 74 0.0016 34.5 3.0 28 130-157 373-400 (435)
271 PRK07188 nicotinate phosphorib 22.3 94 0.002 33.0 3.8 23 135-157 72-94 (352)
272 PF03869 Arc: Arc-like DNA bin 20.4 3.8E+02 0.0082 20.1 6.2 47 339-394 3-49 (50)
No 1
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=2.7e-107 Score=874.10 Aligned_cols=484 Identities=75% Similarity=1.094 Sum_probs=398.8
Q ss_pred cchhhhhhhhhhhhhhhhhccccccceEEeecCCCcC---CcccceeeecceeccccceeecccCcccceeeeeeeccce
Q 010942 2 AYASHIINHSKKLKNVSNLLWHENAVLVRWFSNDAVS---SRDDLLKIHRHVYVPVESERVINSSAISSVSSVGVFKKKF 78 (497)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (497)
+||+|||||||||||++++|+|||+.+||||||++|+ |++++.+.+++. ...+.+++ ..+++++|.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~ 72 (539)
T PLN02744 1 AYASRIINHSKKLRNVSNLLRREHAALVRYFSNSTRSSLGKGDDIAKRRGYP--PLERRSQP------KVSSLGLFGSNI 72 (539)
T ss_pred CchHHHhhhchhhcchHHHhcccccceEEEecCCCccCcccccchhhcccCC--cccccccc------ccccccccccch
Confidence 5899999999999999999999999999999999999 999999887774 33333333 567788999999
Q ss_pred eeeecccCCCcccccccccccccccccccccccCCCCCCceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 79 CSVARKAGSPIAGSFLNRGFACSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~f~~~~~~~~~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
||.+.+.+.|+....++..++|+++.+.|+|++.+.||.+++|.||+||++|+||+|++|+|++||.|++||+||+||||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETD 152 (539)
T PLN02744 73 SRTARKNGSPMTGSGLFKSLSSSQMQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETD 152 (539)
T ss_pred hhhhhhcCCccccchhhhccccccccccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 010942 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPIST 238 (497)
Q Consensus 159 Ka~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (497)
|+++||+|+.+|+|.+|++++|++.|++|++|+++.+++++..++.++.++..+.+..+.+ .+.++.+.++....+.+.
T Consensus 153 Ka~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (539)
T PLN02744 153 KATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKA-KPSPPPPKEEEVEKPASS 231 (539)
T ss_pred cceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEccCccccccccccccccccccccccc-cCCCCCcccccccCCCCC
Confidence 9999999999999999999999536999999998876555433222211111000000000 000000000000001111
Q ss_pred CCCCCCCC-CCCCCCCccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCc
Q 010942 239 SEPKASKP-SAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDY 317 (497)
Q Consensus 239 ~~~~~~~~-~~~~~~~~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~~~~~~~~a~~~a~~~~~~~~~~~ 317 (497)
+.+....+ .+...+.++++||+||+||+||||||+.|+|||++|||+++||++|++......+++++ .....+...+
T Consensus 232 ~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~--~~~~~~~~~~ 309 (539)
T PLN02744 232 PEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPS--TDSKAPALDY 309 (539)
T ss_pred cccccccccccccccccccCCchhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCC--cccCCCCCcc
Confidence 11100010 11112346889999999999999999999999999999999999998542211111100 0001111224
Q ss_pred ccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcccc
Q 010942 318 VDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSW 397 (497)
Q Consensus 318 ~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~ 397 (497)
+++|+++|||+||++|.+||++|||||++.++|+++|+++|++++...+...|.|+|+++||+||+++||++||.||++|
T Consensus 310 ~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~ 389 (539)
T PLN02744 310 TDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSW 389 (539)
T ss_pred ccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheee
Confidence 57899999999999999999999999999999999999999999976655558899999999999999999999999999
Q ss_pred ccCcEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCC-cccCccee
Q 010942 398 ADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLG-GPFGIKQF 476 (497)
Q Consensus 398 ~~~~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG-~~~G~~~f 476 (497)
+++.|+++++|||||||++++||+||||+|||+|||.||++++++|++|||+|+|+++||+|||||||||| | ||+.+|
T Consensus 390 ~~~~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~-~G~~~f 468 (539)
T PLN02744 390 TDDYIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGP-FGIKQF 468 (539)
T ss_pred ccCcEEEeCCcceEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcc-ccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 7 999999
Q ss_pred eeccCCCceEEEEeccceecC
Q 010942 477 CAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 477 tPIInppq~aILgvG~i~~r~ 497 (497)
||||||||+||||||++++||
T Consensus 469 tpIInpPqvaILgvG~i~~~p 489 (539)
T PLN02744 469 CAIINPPQSAILAVGSAEKRV 489 (539)
T ss_pred eccccCCcEEEEEcccceeEe
Confidence 999999999999999999886
No 2
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=5e-84 Score=666.18 Aligned_cols=392 Identities=52% Similarity=0.819 Sum_probs=323.5
Q ss_pred ccccccccccccCCCCCCceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCC
Q 010942 100 CSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179 (497)
Q Consensus 100 ~~~~~~~r~f~~~~~~~~~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~ 179 (497)
|+.+...+.+++...++.|.+|.||.|++||+||+|++|.++|||.+.+||+||||||||++|+++++++|||+||++++
T Consensus 20 ~~~~~~~~~~~~a~~~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~E 99 (470)
T KOG0557|consen 20 CTSVKTKCAHHSASKLPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEE 99 (470)
T ss_pred hcccchhhhccccccCCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeecc
Confidence 33333334444444489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeecCCCEEEEEeccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccCh
Q 010942 180 GSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASP 259 (497)
Q Consensus 180 G~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP 259 (497)
|.++|+||.+||+++|+++|++.++++.++++..+..+.++.+ ++++.....+.|.+.+.+..+.+..+..++|+++||
T Consensus 100 GskdvpVGk~Iaiive~e~di~~~k~~k~~~s~~~~~~~~~~~-~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP 178 (470)
T KOG0557|consen 100 GSKDVPVGKPIAIIVEDEDDIAAFKLPKDEASSGEQSPSAAPP-PAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASP 178 (470)
T ss_pred CcccccCCCceEEEecccccHHHhhccccccccccCCcccCCC-CCCCcccccCCCCCCccccccccCCcCCCCceecCh
Confidence 9779999999999999999999988876642222111221111 111111111112122222222221222256999999
Q ss_pred hhhhhHHHcCCCCCcccccCCCCccchhhHHHHHHhcCCCCCCC------CCCCCCCCCCCCCcccccchhhhHHHHHhh
Q 010942 260 VARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAK------APKGKDVAAPALDYVDIPHSQIRKITASRL 333 (497)
Q Consensus 260 ~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~~~~~~~~a~------~~a~~~~~~~~~~~~~~pls~iRkaia~~m 333 (497)
+||+||.|+|+|+++|+||||+|||++.||+.|++..++..... +++......+...|+++|++.||+.|++||
T Consensus 179 ~Ak~la~e~~l~ls~i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl 258 (470)
T KOG0557|consen 179 LAKKLAEEKGLELSSIPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRL 258 (470)
T ss_pred HHHHHHHHhCCccccCcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhh
Confidence 99999999999999999999999999999999998643321111 111111122334589999999999999999
Q ss_pred hhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcccccc-CcEEEcCCcceEE
Q 010942 334 LFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD-EYIRQFKNVNINV 412 (497)
Q Consensus 334 ~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~-~~i~~~~~vnIgi 412 (497)
.+|+++|||||++.+++++.|+++|+++| + +.++.++++++||+||++.||+++|++|++|.+ +.|+++++|||.+
T Consensus 259 ~eSk~~IPh~yvt~~~~~d~ll~~r~~ln--~-~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~Vdisv 335 (470)
T KOG0557|consen 259 LESKQTIPHYYVTVDVNLDKLLALREKLN--F-EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISV 335 (470)
T ss_pred hhhhcCCCeEEEeeeeehHHHHHHHHHhh--h-cccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhh
Confidence 99999999999999999999999999999 2 245889999999999999999999999999998 7899999999999
Q ss_pred EeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEecc
Q 010942 413 AVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGS 492 (497)
Q Consensus 413 AV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~ 492 (497)
||+|++||++|+|+|++.++|.+|+.++++|+.|+|.|+|.|+||+||||||||||| ||++.|+.||||||.|||+||+
T Consensus 336 AVat~~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGm-f~V~~F~AiinPpq~~ILavg~ 414 (470)
T KOG0557|consen 336 AVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGM-FGVDMFTAIINPPQADILAVGA 414 (470)
T ss_pred eeeccCcccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccC-cCccccccccCCchhhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceec
Q 010942 493 GKDQ 496 (497)
Q Consensus 493 i~~r 496 (497)
.++.
T Consensus 415 ~~~~ 418 (470)
T KOG0557|consen 415 ATPS 418 (470)
T ss_pred Cccc
Confidence 8764
No 3
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=5.8e-82 Score=691.34 Aligned_cols=380 Identities=28% Similarity=0.424 Sum_probs=296.3
Q ss_pred CCceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 116 ~~~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
...++|.||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.+|++++|+ .|++|++|++|.+
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~-~v~vG~~l~~i~~ 211 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDD-TVDVGAEIAKIGD 211 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCC-EecCCCEEEEEec
Confidence 335799999999999999999999999999999999999999999999999999999999999997 9999999999965
Q ss_pred cCCccccccCCCCCCCCCCCCCCCCCCCCCCCC--CCccCCCC--CCCCCCCC-CC-CCCCCCCccccChhhhhhHHHcC
Q 010942 196 EEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPK--QEEVEKPI--STSEPKAS-KP-SAASPEDRLFASPVARNLAEEHN 269 (497)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~--~~~~~~~~-~~-~~~~~~~~v~aSP~ARklA~e~g 269 (497)
++++................++.+..+...+.. ......+. +.+.+... .. .....+.++++||+||+||+|||
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~g 291 (590)
T TIGR02927 212 AGAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHG 291 (590)
T ss_pred CCCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcC
Confidence 444322100000000000000000000000000 00000000 00000000 00 01112347889999999999999
Q ss_pred CCCCcccccCCCCccchhhHHHHHHhcCCC--CCCC-----CCCC--CCCC--CC---CCCcccccchhhhHHHHHhhhh
Q 010942 270 VSLSSIKGTGPNGLIVKADIEDYLASRGKE--VPAK-----APKG--KDVA--AP---ALDYVDIPHSQIRKITASRLLF 335 (497)
Q Consensus 270 IDLs~V~GTG~~GrItk~DV~~~l~~~~~~--~~a~-----~~a~--~~~~--~~---~~~~~~~pls~iRkaia~~m~~ 335 (497)
|||++|+|||++|||+++||++|+...... .++. .+.. .... .+ ...++++|+++|||.||++|.+
T Consensus 292 vdl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~ 371 (590)
T TIGR02927 292 IDLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTRE 371 (590)
T ss_pred CCHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHH
Confidence 999999999999999999999998542111 1110 0000 0000 01 0124567999999999999999
Q ss_pred ccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcccccc--CcEEEcCCcceEEE
Q 010942 336 SKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVA 413 (497)
Q Consensus 336 S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~--~~i~~~~~vnIgiA 413 (497)
||+++||||++.++|+|+|+++|+++|+.+.+.+|.||||++||+||+++||++||.||++|++ +.|++|+++|||||
T Consensus 372 S~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvA 451 (590)
T TIGR02927 372 ALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFA 451 (590)
T ss_pred HhccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEE
Confidence 9999999999999999999999999997655545889999999999999999999999999974 47999999999999
Q ss_pred eecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccc
Q 010942 414 VQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSG 493 (497)
Q Consensus 414 V~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i 493 (497)
|++++||+||||||+++|||.+|++++++|++|||+|+|+++||+||||||||||| ||+++|||||||||+||||||++
T Consensus 452 v~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~-~G~~~~tpIIn~PqvaILgvG~i 530 (590)
T TIGR02927 452 VDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGS-EGALFDTPILIPPQAAILGTGAI 530 (590)
T ss_pred EECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCC-CCccceeceecCCCeEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eecC
Q 010942 494 KDQL 497 (497)
Q Consensus 494 ~~r~ 497 (497)
++||
T Consensus 531 ~~~p 534 (590)
T TIGR02927 531 VKRP 534 (590)
T ss_pred eEEE
Confidence 9886
No 4
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=1.4e-81 Score=661.10 Aligned_cols=352 Identities=33% Similarity=0.474 Sum_probs=291.9
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCC
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
++|.||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.++++++|+ .|++|++|+++.++++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~~ 81 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-TVTVGQVLGRIDEGAA 81 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCc
Confidence 599999999999999999999999999999999999999999999999999999999999997 8999999999864433
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhhhhhHHHcCCCCCccccc
Q 010942 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGT 278 (497)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~V~GT 278 (497)
+... .+. +...++ +.+ .+. +.+.. +. .. ...+.+||+||+||+||||||++|+||
T Consensus 82 ~~~~----~~~-------~~~~~~-~~~-------~~~--~~~~~--~~-~~-~~~~~asP~aR~lA~e~gidl~~v~gt 136 (407)
T PRK05704 82 AGAA----AAA-------AAAAAA-AAA-------APA--QAQAA--AA-AE-QSNDALSPAARKLAAENGLDASAVKGT 136 (407)
T ss_pred cccc----CCC-------CCCCCC-CCC-------CCC--CCCCC--cc-CC-CccccCCchhhhHHhhcCCChhhCCCC
Confidence 2110 000 000000 000 000 00000 00 01 123579999999999999999999999
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCCCCCCCC-C--CCCCCcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHH
Q 010942 279 GPNGLIVKADIEDYLASRGKEVPAKAPKGKDV-A--APALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (497)
Q Consensus 279 G~~GrItk~DV~~~l~~~~~~~~a~~~a~~~~-~--~~~~~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~ 355 (497)
|++|||+++||++|+++.......++...... + .+....+.+|++++||+|+++|..||+++||||+..++|+++|+
T Consensus 137 G~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~ 216 (407)
T PRK05704 137 GKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVM 216 (407)
T ss_pred CCCCcccHHHHHHHhhcccccCCCCCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHH
Confidence 99999999999999753211110000000000 0 01111245799999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHH
Q 010942 356 GLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 435 (497)
Q Consensus 356 ~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~e 435 (497)
++|++++..+....|.|+|+++||+||+++||++||.+|++|+++.+++++++||||||++++||+||||||||+|||.|
T Consensus 217 ~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~e 296 (407)
T PRK05704 217 DLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAE 296 (407)
T ss_pred HHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHH
Confidence 99999997655555889999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 436 IAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 436 Ia~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
|++++++|++|+|+|+|+++||+||||||||+|| ||+.+|+|||||||+||||+|++++||
T Consensus 297 Ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~-~G~~~~tpiIn~pq~aILgvG~i~~~p 357 (407)
T PRK05704 297 IEKKIAELAKKARDGKLSIEELTGGTFTITNGGV-FGSLMSTPIINPPQSAILGMHKIKERP 357 (407)
T ss_pred HHHHHHHHHHHHHcCCCChHHcCCceEEEecCCc-ccccceeccccCCcEEEEEcccceEEe
Confidence 9999999999999999999999999999999999 999999999999999999999999886
No 5
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=3.3e-81 Score=657.20 Aligned_cols=351 Identities=31% Similarity=0.476 Sum_probs=292.0
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCC
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
++|+||+||++|+||+|++|+|++||.|++||+|++|||||+++||+||++|+|.++++++|+ .|++|++|+++.++++
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~-~v~vG~~l~~i~~~~~ 79 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGD-TVESGQVLAILEEGND 79 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCC
Confidence 479999999999999999999999999999999999999999999999999999999999997 8999999999954322
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhhhhhHHHcCCCCCccccc
Q 010942 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGT 278 (497)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~V~GT 278 (497)
. . +...++ +. ++.+.+ . .. + ..+.+ . ..+.++.+||+||+||+|+||||+.|+||
T Consensus 80 ~-~-------~~~~~~--~~--~~~~~~--~-~~--~-~~~~~-----~--~~~~~~~asP~aR~lA~e~gvdl~~v~gt 134 (403)
T TIGR01347 80 A-T-------AAPPAK--SG--EEKEET--P-AA--S-AAAAP-----T--AAANRPSLSPAARRLAKEHGIDLSAVPGT 134 (403)
T ss_pred C-c-------cccccc--cc--CCCCCC--C-CC--C-CCCCC-----c--CccccccCCchhhhHHHHcCCChhhCCCC
Confidence 1 0 000000 00 000000 0 00 0 00000 0 11236779999999999999999999999
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCC--CCCCcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHH
Q 010942 279 GPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAA--PALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMG 356 (497)
Q Consensus 279 G~~GrItk~DV~~~l~~~~~~~~a~~~a~~~~~~--~~~~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~ 356 (497)
|++|||+++||++|++.... .+++.+....... +....+.+|+++|||+||++|..||+++||||++.++|+++|++
T Consensus 135 G~~GrI~~~DV~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~ 213 (403)
T TIGR01347 135 GVTGRVTKEDIIKKTEAPAS-AQAPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVME 213 (403)
T ss_pred CCCCcccHHHHHHhhhcccc-cCCCCCCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHH
Confidence 99999999999999753211 1110000000000 01112357999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHH
Q 010942 357 LRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTI 436 (497)
Q Consensus 357 lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eI 436 (497)
+|+++++.+.+++|.++||++||+||+++||++||.||++|+++.|++++++||||||++++||+||||||||+|||.||
T Consensus 214 ~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eI 293 (403)
T TIGR01347 214 LRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADI 293 (403)
T ss_pred HHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHH
Confidence 99999976655568899999999999999999999999999998999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 437 AEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 437 a~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
++++++|++|+|+|+|+++||+||||||||+|| ||+.+|||||||||+||||||+++++|
T Consensus 294 a~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~-~G~~~~tpiin~pq~aILgvG~i~~~p 353 (403)
T TIGR01347 294 EKEIADLGKKARDGKLTLEDMTGGTFTITNGGV-FGSLMSTPIINPPQSAILGMHGIKERP 353 (403)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCceEEEecCCc-CcccceeccccCCceEEEecccceEEE
Confidence 999999999999999999999999999999999 999999999999999999999999875
No 6
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=3e-78 Score=641.04 Aligned_cols=371 Identities=51% Similarity=0.835 Sum_probs=291.4
Q ss_pred EEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCee-ecCCCEEEEEeccCC
Q 010942 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKE-IKVGEVIAITVEEEE 198 (497)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~-v~vG~~l~~i~~~~~ 198 (497)
+|.||++|++|+||+|++|+|++||.|+.||+||+|||||+++||+||.+|+|.++++++|+ . |++|++|++|.++++
T Consensus 1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~-~~v~vG~~l~~i~~~~~ 79 (435)
T TIGR01349 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT-KDVPVNKPIAVLVEEKE 79 (435)
T ss_pred CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC-EEecCCCEEEEEeccCC
Confidence 36899999999999999999999999999999999999999999999999999999999997 8 999999999965433
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC---CCC--CC-CCCCCCCccccChhhhhhHHHcCCCC
Q 010942 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEP---KAS--KP-SAASPEDRLFASPVARNLAEEHNVSL 272 (497)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~-~~~~~~~~v~aSP~ARklA~e~gIDL 272 (497)
+..............+ ++...+. +++.+.....+...+.+ ... .. .....+.++++||+||+||+||||||
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl 156 (435)
T TIGR01349 80 DVADAFKNYKLESSAS-APKPSEI--APTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDL 156 (435)
T ss_pred cccccccccccccccc-CCCCccc--ccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCH
Confidence 3210000000000000 0000000 00000000000000000 000 00 00112236789999999999999999
Q ss_pred CcccccCCCCccchhhHHHHHHhcCCCCCCC--CCCCC--CCCCC--CCCcccccchhhhHHHHHhhhhccCCccEEEEe
Q 010942 273 SSIKGTGPNGLIVKADIEDYLASRGKEVPAK--APKGK--DVAAP--ALDYVDIPHSQIRKITASRLLFSKQTIPHYYLT 346 (497)
Q Consensus 273 s~V~GTG~~GrItk~DV~~~l~~~~~~~~a~--~~a~~--~~~~~--~~~~~~~pls~iRkaia~~m~~S~~~iP~~tl~ 346 (497)
+.|+|||++|||+++||++|++......+++ .+... ....+ ......+||++|||+|+++|..||+++||||+.
T Consensus 157 ~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~ 236 (435)
T TIGR01349 157 SAVAGSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVS 236 (435)
T ss_pred hHCCCCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEE
Confidence 9999999999999999999985421111110 00000 00001 112346799999999999999999999999999
Q ss_pred eecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEeecCCCeEeeeec
Q 010942 347 VDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIR 426 (497)
Q Consensus 347 ~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV~t~~GL~vPVI~ 426 (497)
.++|+++|+++|++++..... |.++|+++||+||+++||++||.||++|+++.|+++++|||||||++++||+|||||
T Consensus 237 ~evd~t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~ 314 (435)
T TIGR01349 237 IECNVDKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVR 314 (435)
T ss_pred EEEEhHHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCC
Confidence 999999999999999865432 789999999999999999999999999999899999999999999999999999999
Q ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 427 DADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 427 ~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
|+|+|||.||++++++|++++|+|+|+++||+||||||||+|| ||+.+|+|||||||+||||||++.++|
T Consensus 315 ~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~-~G~~~~tpiin~pq~aIlgvG~i~~~p 384 (435)
T TIGR01349 315 NADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGM-FGIKDFTAIINPPQACILAVGAVEDVA 384 (435)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCc-cCccceECccCCCceEEEEcccceEEe
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999885
No 7
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=1.1e-77 Score=652.87 Aligned_cols=366 Identities=31% Similarity=0.487 Sum_probs=291.0
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCC
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
++|.||+||+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++|+++.++++
T Consensus 117 ~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 117 QEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD-SVPTGDLILTLSVAGS 194 (546)
T ss_pred eEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence 6999999999 9999999999999999999999999999999999999999999999999997 9999999999865443
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC--CCCCCCCcc-ccChhhhhhHHHcCCCCCcc
Q 010942 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKP--SAASPEDRL-FASPVARNLAEEHNVSLSSI 275 (497)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v-~aSP~ARklA~e~gIDLs~V 275 (497)
+..... .+.. . ++....+.+.. +.....+.... +..... .....+.++ ++||+||+||+||||||+.|
T Consensus 195 ~~~~~~--~~~~-~---~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v 265 (546)
T TIGR01348 195 TPATAP--APAS-A---QPAAQSPAATQ--PEPAAAPAAAK-AQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAV 265 (546)
T ss_pred Cccccc--Cccc-c---cccCCCCcccc--ccccCCCCCCC-ccCcccccccccccccccCCCHHHHHHHHHcCCCHhhC
Confidence 211000 0000 0 00000000000 00000000000 000000 001112356 79999999999999999999
Q ss_pred cccCCCCccchhhHHHHHHhcCC-CCCCCCCCC-C-C-C-CCC-----CC-CcccccchhhhHHHHHhhhhccCCccEEE
Q 010942 276 KGTGPNGLIVKADIEDYLASRGK-EVPAKAPKG-K-D-V-AAP-----AL-DYVDIPHSQIRKITASRLLFSKQTIPHYY 344 (497)
Q Consensus 276 ~GTG~~GrItk~DV~~~l~~~~~-~~~a~~~a~-~-~-~-~~~-----~~-~~~~~pls~iRkaia~~m~~S~~~iP~~t 344 (497)
+|||++|||+++||++|+..... .++.++++. . . . ..+ .. .++.+|+++|||+|+++|..|++++||||
T Consensus 266 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~ 345 (546)
T TIGR01348 266 KGTGIKGRILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVT 345 (546)
T ss_pred CCCCCCCeEeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEE
Confidence 99999999999999999853211 111000000 0 0 0 000 00 13457999999999999999999999999
Q ss_pred EeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcccccc--CcEEEcCCcceEEEeecCCCeEe
Q 010942 345 LTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVAVQTENGLYV 422 (497)
Q Consensus 345 l~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~--~~i~~~~~vnIgiAV~t~~GL~v 422 (497)
++.++|+|+|+++|+++++.... .|.|+||++||+||+++||++||.||++|++ +.|+++++|||||||++++||+|
T Consensus 346 ~~~evdvt~l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~v 424 (546)
T TIGR01348 346 HFDKADITEMEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLV 424 (546)
T ss_pred EEEEEEcHHHHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEE
Confidence 99999999999999999976554 4889999999999999999999999999984 47999999999999999999999
Q ss_pred eeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 423 PVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 423 PVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
|||||+|+|||.+|++++++|++|+|+|+|+++||+||||||||+|| ||+++|+|||||||+||||||+++++|
T Consensus 425 Pvi~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~-~G~~~~~piin~Pq~aIl~vg~~~~~p 498 (546)
T TIGR01348 425 PVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGG-IGGTAFTPIVNAPEVAILGVSKSGMEP 498 (546)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCC-CCCcceECCCCCCceEEEEcccceEEe
Confidence 99999999999999999999999999999999999999999999999 999999999999999999999999886
No 8
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=9.1e-77 Score=626.53 Aligned_cols=349 Identities=28% Similarity=0.453 Sum_probs=285.2
Q ss_pred EecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCCcc
Q 010942 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 200 (497)
Q Consensus 121 i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~~~ 200 (497)
+.||+||++|+||+|++|+|++||.|++||+|++|||||+.++++|+.+|+|.++++++|+ .|++|++|+++..++++.
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~~~ 79 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGD-IVKVGETLLKIMVEDSQH 79 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEeccCCcc
Confidence 4699999999999999999999999999999999999999999999999999999999997 899999999885443321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhhhhhHHHcCCCCCcccccCC
Q 010942 201 PKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGP 280 (497)
Q Consensus 201 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~V~GTG~ 280 (497)
+. +... + ++.+.++.+ .+.. +.+. .. ....+++||+||+||+||||||+.|+|||+
T Consensus 80 ~~-----~~~~-~--~~~~~~~~~---------~~~~-~~~~----~~--~~~~~~asP~aR~lA~e~gvdl~~v~gtG~ 135 (416)
T PLN02528 80 LR-----SDSL-L--LPTDSSNIV---------SLAE-SDER----GS--NLSGVLSTPAVRHLAKQYGIDLNDILGTGK 135 (416)
T ss_pred cc-----ccCC-C--CCCCCccCC---------CCCC-CCcc----cc--ccCCccCChHHHHHHHHhCCCHHHCCCCCC
Confidence 10 0000 0 000000000 0000 0000 00 111357999999999999999999999999
Q ss_pred CCccchhhHHHHHHhcCC-CCC--CCCCCCCCC-------CCCC-C--CcccccchhhhHHHHHhhhhccCCccEEEEee
Q 010942 281 NGLIVKADIEDYLASRGK-EVP--AKAPKGKDV-------AAPA-L--DYVDIPHSQIRKITASRLLFSKQTIPHYYLTV 347 (497)
Q Consensus 281 ~GrItk~DV~~~l~~~~~-~~~--a~~~a~~~~-------~~~~-~--~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~ 347 (497)
+|||+++||++|++.... ..+ +..+..... ..+. . ..+.+|++++||+|+++|..|+ ++||||+..
T Consensus 136 ~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~ 214 (416)
T PLN02528 136 DGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVE 214 (416)
T ss_pred CCcEeHHHHHHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEE
Confidence 999999999999853221 101 000000000 0000 0 1245799999999999999997 999999999
Q ss_pred ecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccC--cEEEcCCcceEEEeecCCCeEeeee
Q 010942 348 DICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYVPVI 425 (497)
Q Consensus 348 ~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~--~i~~~~~vnIgiAV~t~~GL~vPVI 425 (497)
++|+++|+++|+++++.... .|.|+||++||+||+++||++||.||++|+++ .|++++++||||||++++||+||||
T Consensus 215 eid~~~l~~~r~~~~~~~~~-~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi 293 (416)
T PLN02528 215 EINVDALVELKASFQENNTD-PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNI 293 (416)
T ss_pred EEEhHHHHHHHHHHhhhhhh-cCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEeccc
Confidence 99999999999999864333 48899999999999999999999999999865 7999999999999999999999999
Q ss_pred cCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 426 RDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 426 ~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
+|+|+||+.||++++++|++++|+|+|+++||+||||||||+|| ||+.+|+|||||||+||||||+++++|
T Consensus 294 ~~a~~~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~-~G~~~~tpIin~pq~aIlgvG~i~~~p 364 (416)
T PLN02528 294 KNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGA-IGGKFGSPVLNLPEVAIIALGRIQKVP 364 (416)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeCCcc-ccCCceECcccCCceEEEEcccceEEe
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999876
No 9
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.8e-77 Score=626.97 Aligned_cols=352 Identities=45% Similarity=0.668 Sum_probs=296.4
Q ss_pred ceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
.++|+||+||++|+||+|++|+|++||+|++||+|+||||||+++||+||++|+|.+|++++|+ +|+||++|++|.+++
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~-~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD-TVPVGAVIARIEEEG 80 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCC-EEcCCCeEEEEecCC
Confidence 4699999999999999999999999999999999999999999999999999999999999998 899999999997665
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhhhhhHHHcCCCCCcccc
Q 010942 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (497)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~V~G 277 (497)
++.. .....++++..+. + ..++.+ .......+..+||++|+||+|+||||..+.|
T Consensus 81 ~~~~-------a~~~~~~~~~~~~-------~------~~~~~~-----~~~~~~~~~~asP~~r~la~e~gidl~~v~g 135 (404)
T COG0508 81 ADAP-------AAAEAPPEPAAAA-------P------ASAPAT-----AASAAAGRVLASPAVRRLAREAGIDLSKVKG 135 (404)
T ss_pred Cccc-------ccCcccCCccccC-------c------CcccCc-----cccccccccccCcchhhhhhhcCCCHHHcCC
Confidence 4320 0000000000000 0 000000 0000114778999999999999999999999
Q ss_pred cCCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHH
Q 010942 278 TGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGL 357 (497)
Q Consensus 278 TG~~GrItk~DV~~~l~~~~~~~~a~~~a~~~~~~~~~~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~l 357 (497)
||++|||+++|++.|+.......++..+...........++++|++++||.|+++|..|++++||+|.+.++|++.|+++
T Consensus 136 tG~~gri~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~l 215 (404)
T COG0508 136 TGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMAL 215 (404)
T ss_pred cCCCCceeccchhhhcccccccccccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHH
Confidence 99999999999999986541111111110000011223567899999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccC--cEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHH
Q 010942 358 RNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 435 (497)
Q Consensus 358 R~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~--~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~e 435 (497)
|++++..+..+ |.|+|+++|++||++.||++||.+|++|+++ .+++++++|||+||++++||++||||||+++++.+
T Consensus 216 r~~~~~~~~~~-g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~ 294 (404)
T COG0508 216 RKKLKEEFEKK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAE 294 (404)
T ss_pred HHHhhhhhccc-CccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHH
Confidence 99999776654 9999999999999999999999999888865 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 436 IAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 436 Ia~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
|+.++.+|..++|+|+|+++||+||||||||+|+ ||+.+||||||+||+||||+|++.+||
T Consensus 295 i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~-~g~~~~tpiin~Pq~aILgv~~~~~rp 355 (404)
T COG0508 295 IAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGM-FGSLMFTPIINPPQVAILGVGAIEERP 355 (404)
T ss_pred HHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCc-cccceecccccChhHheeeccccccCc
Confidence 9999999999999999999999999999999999 999999999999999999999999987
No 10
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=1.4e-72 Score=622.69 Aligned_cols=363 Identities=31% Similarity=0.493 Sum_probs=289.3
Q ss_pred ceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
.++|.||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+ .|++|++|+.+.+++
T Consensus 206 ~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~-~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 206 VKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGD-KVKTGSLIMRFEVEG 282 (633)
T ss_pred ceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCC-EecCCCEEEEEecCC
Confidence 4799999999 9999999999999999999999999999999999999999999999999997 999999999986443
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC-CCCCCCCCCCccccChhhhhhHHHcCCCCCccc
Q 010942 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKA-SKPSAASPEDRLFASPVARNLAEEHNVSLSSIK 276 (497)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~V~ 276 (497)
++.... +.+.. +. .+.+.+. .. ..+.+.+.+.. ........+.++++||+||+||+||||||+.|+
T Consensus 283 ~~~~~~----~~~~~----~~--~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~ 349 (633)
T PRK11854 283 AAPAAA----PAKQE----AA--APAPAAA-KA--EAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVK 349 (633)
T ss_pred CCcccc----ccccC----CC--CCCcccc-cc--CCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcC
Confidence 321100 00000 00 0000000 00 00000000000 000001122367899999999999999999999
Q ss_pred ccCCCCccchhhHHHHHHhcCC-C--CCCCCCCC-C-C--CCCC-----CC-CcccccchhhhHHHHHhhhhccCCccEE
Q 010942 277 GTGPNGLIVKADIEDYLASRGK-E--VPAKAPKG-K-D--VAAP-----AL-DYVDIPHSQIRKITASRLLFSKQTIPHY 343 (497)
Q Consensus 277 GTG~~GrItk~DV~~~l~~~~~-~--~~a~~~a~-~-~--~~~~-----~~-~~~~~pls~iRkaia~~m~~S~~~iP~~ 343 (497)
|||++|||+++||++|+..... . .++.++.. . . ...+ .. ....+||++|||.|+++|..||+++|||
T Consensus 350 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~ 429 (633)
T PRK11854 350 GTGRKGRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHV 429 (633)
T ss_pred CCCCCCeEeHHHHHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeE
Confidence 9999999999999999854211 0 11100000 0 0 0000 01 1245799999999999999999999999
Q ss_pred EEeeecchHHHHHHHHHHhHHHHH-hcCCcccHHHHHHHHHHHHHhhCCCCccccc--cCcEEEcCCcceEEEeecCCCe
Q 010942 344 YLTVDICVDNLMGLRNQLNSIQEA-SAGKRISVNDLVIKAAALALRKVPRCNSSWA--DEYIRQFKNVNINVAVQTENGL 420 (497)
Q Consensus 344 tl~~~idvt~L~~lR~~l~~~~~~-~~g~klTi~~~liKAva~AL~~~P~lNa~~~--~~~i~~~~~vnIgiAV~t~~GL 420 (497)
|++.++|+|+|+++|++++..... .+|.++|+++||+||+++||++||.||++|+ ++.+++++++||||||++++||
T Consensus 430 ~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL 509 (633)
T PRK11854 430 TQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGL 509 (633)
T ss_pred EEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCce
Confidence 999999999999999999854322 3488999999999999999999999999996 4579999999999999999999
Q ss_pred EeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 421 YVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 421 ~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
+||||||+++++|.+|++++++|++++|+|+|+++||+||||||||+|+ ||+++|||||||||+||||+|++.++|
T Consensus 510 ~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~-~G~~~~tpii~ppq~aIlgvG~i~~~p 585 (633)
T PRK11854 510 VVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGG-LGTTHFTPIVNAPEVAILGVSKSAMEP 585 (633)
T ss_pred EEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcc-cCCcceeccccCCceEEEEcccceEEE
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999875
No 11
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=2e-72 Score=593.87 Aligned_cols=347 Identities=29% Similarity=0.424 Sum_probs=272.8
Q ss_pred ccccccccccccccccccCCCCCCc-eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEE
Q 010942 94 LNRGFACSKVHLKRGFSSDSGLPPH-QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYL 172 (497)
Q Consensus 94 ~~~~~~~~~~~~~r~f~~~~~~~~~-~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l 172 (497)
.+++++.++..+.|||+........ .+|.||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v 145 (463)
T PLN02226 66 ISRSASLVSSTLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVI 145 (463)
T ss_pred cCCchhhhhhhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEE
Confidence 3445555555444444432221111 599999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCeeecCCCEEEEEeccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q 010942 173 AKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPE 252 (497)
Q Consensus 173 ~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (497)
.+|++++|+ .|++|++|++|.+++++.+ .+. +.... +.. . ...+. +... . . ..
T Consensus 146 ~~ilv~eGd-~V~vG~~L~~I~~~~~~~~-----~~~-------~~~~~--~~~--~--~~~~~----~~~~--~-~-~~ 198 (463)
T PLN02226 146 QEFLVKEGD-TVEPGTKVAIISKSEDAAS-----QVT-------PSQKI--PET--T--DPKPS----PPAE--D-K-QK 198 (463)
T ss_pred EEEEeCCCC-EecCCCEEEEeccCCcccc-----ccC-------ccCCC--CCC--C--CCCCC----Cccc--c-c-cc
Confidence 999999998 9999999999853322110 000 00000 000 0 00000 0000 0 0 12
Q ss_pred CccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccchhhhHHHHHh
Q 010942 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASR 332 (497)
Q Consensus 253 ~~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~~~~~~~~a~~~a~~~~~~~~~~~~~~pls~iRkaia~~ 332 (497)
.++.++|++|+.+ .++|+.+.. . +...+ ........+.+|+++|||.||++
T Consensus 199 ~~v~asp~~r~~~----------~~~~~~~~~--------------~-~~~~~----~~~~~~~~~~ipls~~Rk~IA~~ 249 (463)
T PLN02226 199 PKVESAPVAEKPK----------APSSPPPPK--------------Q-SAKEP----QLPPKERERRVPMTRLRKRVATR 249 (463)
T ss_pred cCCCcchhhcccc----------CCCCCCCCc--------------c-cccCc----ccccCCCceeeeChHHHHHHHHH
Confidence 2677899887643 233432210 0 00000 00001123457999999999999
Q ss_pred hhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEE
Q 010942 333 LLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINV 412 (497)
Q Consensus 333 m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgi 412 (497)
|..||++|||||++.++|+|+|+++|+++++.+.++.|.|+||++||+||+++||++||.+|++|+++.|+++++|||||
T Consensus 250 M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIGv 329 (463)
T PLN02226 250 LKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISI 329 (463)
T ss_pred HHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCEEEEeCcccEEE
Confidence 99999999999999999999999999999976665568899999999999999999999999999998999999999999
Q ss_pred EeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEecc
Q 010942 413 AVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGS 492 (497)
Q Consensus 413 AV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~ 492 (497)
||++++||+||||||||+|+|.||++++++|++|+|+|+|+++||+||||||||+|| ||+++|||||||||+||||||+
T Consensus 330 AV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~-~Gv~~ftPIInpPqvAILgvG~ 408 (463)
T PLN02226 330 AVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGV-YGSLISTPIINPPQSAILGMHS 408 (463)
T ss_pred EEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCc-ccccceeccccCCcEEEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ceecC
Q 010942 493 GKDQL 497 (497)
Q Consensus 493 i~~r~ 497 (497)
+++||
T Consensus 409 i~~~p 413 (463)
T PLN02226 409 IVSRP 413 (463)
T ss_pred ceEEE
Confidence 99986
No 12
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=1.6e-70 Score=575.58 Aligned_cols=325 Identities=29% Similarity=0.429 Sum_probs=257.6
Q ss_pred ceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
.++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||.+|+|.++++++|+ .|++|++|+++.+.+
T Consensus 44 i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~-~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 44 IKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGD-TVEVGAPLSEIDTGG 122 (418)
T ss_pred ceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCC-EecCCCEEEEEcCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999998 899999999985433
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhhhhhHHHcCCCCCcccc
Q 010942 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (497)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~V~G 277 (497)
++.. ++.. +. .+.+++. + ...+...+.|... .....+..++|.+|+..
T Consensus 123 ~~~~-----~~~~------~~--~~~~~~~-~--~~~~~~~~~p~~~----~~a~~~~~a~p~vr~~~------------ 170 (418)
T PTZ00144 123 APPA-----AAPA------AA--AAAKAEK-T--TPEKPKAAAPTPE----PPAASKPTPPAAAKPPE------------ 170 (418)
T ss_pred cccc-----cccc------cc--CCCCCcc-C--CCCCCCCCCCccc----cccccccCCchhhhccc------------
Confidence 2110 0000 00 0000000 0 0000000000000 00111344566665310
Q ss_pred cCCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHH
Q 010942 278 TGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGL 357 (497)
Q Consensus 278 TG~~GrItk~DV~~~l~~~~~~~~a~~~a~~~~~~~~~~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~l 357 (497)
... .. +..+. .........+.+|+++|||+||++|..||++|||||++.++|+++|+++
T Consensus 171 ----------------~~~-~~--~~~~~--~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~ 229 (418)
T PTZ00144 171 ----------------PAP-AA--KPPPT--PVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMEL 229 (418)
T ss_pred ----------------cCC-CC--CCCCC--CccccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHH
Confidence 000 00 00000 0000011123479999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHH
Q 010942 358 RNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIA 437 (497)
Q Consensus 358 R~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa 437 (497)
|+++++.+.+.+|.|+|+++||+||+++||++||.+|++|+++.|++++++||||||++++||+||||+|||+|+|.||+
T Consensus 230 r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa 309 (418)
T PTZ00144 230 RKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIE 309 (418)
T ss_pred HHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHH
Confidence 99999766555588999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 438 EEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 438 ~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
+++++|++++|+|+|+++||+||||||||+|| ||+++|||||||||+||||+|+++++|
T Consensus 310 ~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~-~G~~~~tpIInpPq~aILgvG~i~~~p 368 (418)
T PTZ00144 310 KELADLAEKARNNKLTLEDMTGGTFTISNGGV-FGSLMGTPIINPPQSAILGMHAIKKRP 368 (418)
T ss_pred HHHHHHHHHHHcCCCCHHHhCCceEEEECCCC-CCcceeeeeecCCceEEEecccceeEe
Confidence 99999999999999999999999999999999 999999999999999999999999986
No 13
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.6e-70 Score=596.66 Aligned_cols=363 Identities=36% Similarity=0.539 Sum_probs=289.2
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCC
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
.+|.||+||+ |+||+|++|+|++||.|++||.|++|||||+.++|+||++|+|.++++++|+ .|++|++|+++.+.++
T Consensus 120 ~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~-~v~~G~~l~~i~~~~~ 197 (547)
T PRK11855 120 VEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD-KVSVGSLLVVIEVAAA 197 (547)
T ss_pred eEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence 6999999999 9999999999999999999999999999999999999999999999999997 9999999999865433
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcc-ccChhhhhhHHHcCCCCCcccc
Q 010942 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRL-FASPVARNLAEEHNVSLSSIKG 277 (497)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~aSP~ARklA~e~gIDLs~V~G 277 (497)
+..... .+. .. .+.. ...+.+. . .+.....+............+. ++||+||+||+||||||+.|+|
T Consensus 198 ~~~~~~--~~~-~~---~~~~-~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~g 265 (547)
T PRK11855 198 APAAAA--APA-AA---APAA-AAAAAPA---P--APAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKG 265 (547)
T ss_pred cccccc--CCC-CC---CCcc-ccccCCC---C--CCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcC
Confidence 210000 000 00 0000 0000000 0 0000000000000001111244 7999999999999999999999
Q ss_pred cCCCCccchhhHHHHHHhcCCC--CCCC-CCCC---CC--CCCCC-----C-CcccccchhhhHHHHHhhhhccCCccEE
Q 010942 278 TGPNGLIVKADIEDYLASRGKE--VPAK-APKG---KD--VAAPA-----L-DYVDIPHSQIRKITASRLLFSKQTIPHY 343 (497)
Q Consensus 278 TG~~GrItk~DV~~~l~~~~~~--~~a~-~~a~---~~--~~~~~-----~-~~~~~pls~iRkaia~~m~~S~~~iP~~ 343 (497)
||++|||+++||++|+...... .++. +.+. .. ...+. . ....+|++++||.||++|..||+++|||
T Consensus 266 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~ 345 (547)
T PRK11855 266 TGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHV 345 (547)
T ss_pred CCCCCcEeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeE
Confidence 9999999999999998642111 0100 0000 00 00110 0 1345799999999999999999999999
Q ss_pred EEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccc--cCcEEEcCCcceEEEeecCCCeE
Q 010942 344 YLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWA--DEYIRQFKNVNINVAVQTENGLY 421 (497)
Q Consensus 344 tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~--~~~i~~~~~vnIgiAV~t~~GL~ 421 (497)
|++.++|+++|+++|+++++.++. .|.++||++||+||+++||++||+||++|+ ++.+++++++|||+||++++||+
T Consensus 346 ~~~~evd~t~l~~~r~~~~~~~~~-~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~ 424 (547)
T PRK11855 346 TQFDEADITDLEALRKQLKKEAEK-AGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLV 424 (547)
T ss_pred EEEEEEEChHHHHHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccE
Confidence 999999999999999999865544 388999999999999999999999999998 45799999999999999999999
Q ss_pred eeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 422 VPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 422 vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
+|||+|++++++.+|++++++|++++|+|+|.++||+||||||||||+ ||+++|+|||||||+||||+|++.++|
T Consensus 425 vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~-~g~~~~tpii~~pq~ail~~G~~~~~p 499 (547)
T PRK11855 425 VPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGG-IGGTAFTPIINAPEVAILGVGKSQMKP 499 (547)
T ss_pred eCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCcc-ccccceecCcCCCceEEEEcccceEee
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999875
No 14
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=1.6e-68 Score=564.69 Aligned_cols=358 Identities=44% Similarity=0.660 Sum_probs=288.7
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCC
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
.++.||++|++|+||+|++|+|++||.|+.||+|++|||||+.++|+||++|+|.++++++|+ .|++|++|+++.+.++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~-~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGD-VVPVGSVIAVIEEEGE 81 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCC-EeCCCCEEEEEecCCC
Confidence 489999999999999999999999999999999999999999999999999999999999997 8999999999865543
Q ss_pred -ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhhhhhHHHcCCCCCcccc
Q 010942 199 -DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (497)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~V~G 277 (497)
+.... +..... ++.. .+.+. ..+.....+..........+.++.+||+||+||+||||||++|+|
T Consensus 82 ~~~~~~----~~~~~~--~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~g 147 (411)
T PRK11856 82 AEAAAA----AEAAPE--APAP---EPAPA-----AAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKG 147 (411)
T ss_pred Cccccc----cCCCCC--CCCC---CCCCC-----CCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcC
Confidence 21110 000000 0000 00000 000000000000000011122457999999999999999999999
Q ss_pred cCCCCccchhhHHHHHHhcCCCCC-CCCCCCCCCCCCCCCcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHH
Q 010942 278 TGPNGLIVKADIEDYLASRGKEVP-AKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMG 356 (497)
Q Consensus 278 TG~~GrItk~DV~~~l~~~~~~~~-a~~~a~~~~~~~~~~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~ 356 (497)
||++|||+++||++|+........ ...+............+.+|++++||.||++|..||+++||||++.++|+++|++
T Consensus 148 sG~~Gri~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~ 227 (411)
T PRK11856 148 SGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLA 227 (411)
T ss_pred CCCCCeEEHHHHHHHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHH
Confidence 999999999999999854321110 0000000000001134568999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHH
Q 010942 357 LRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTI 436 (497)
Q Consensus 357 lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eI 436 (497)
+|++++.. +.++||++||+||+++||++||+||++|+++.+++|+++|||+||++++||++|||+++++++|.+|
T Consensus 228 ~~k~~~~~-----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei 302 (411)
T PRK11856 228 LRKQLKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFEL 302 (411)
T ss_pred HHHHHHhh-----ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHH
Confidence 99998742 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 437 AEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 437 a~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
++++.++++++|+|+|+++||+||||||||+|+ ||+.+|+|||||||+|||++|++.++|
T Consensus 303 ~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~-~g~~~~~Pii~~p~~ail~iG~~~~~~ 362 (411)
T PRK11856 303 AREIKDLAEKAREGKLKPEELQGGTFTISNLGM-FGGDYFTPIINPPEVAILGVGAIVERP 362 (411)
T ss_pred HHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCc-cCCCceECccCCCceEEEEcccceEEE
Confidence 999999999999999999999999999999999 999999999999999999999998874
No 15
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.8e-67 Score=523.03 Aligned_cols=350 Identities=28% Similarity=0.425 Sum_probs=290.1
Q ss_pred CCCceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 115 LPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 115 ~~~~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
....+.|.+-++||++.|++|.+|+|+|||+|++.|.||||++||++++|++.++|+|++|+...|+ ...||++|..+.
T Consensus 61 ~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~dd-ia~VGk~Lvd~e 139 (474)
T KOG0558|consen 61 NSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDD-IAKVGKPLVDLE 139 (474)
T ss_pred ccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchh-hhHhCcceeeee
Confidence 3446799999999999999999999999999999999999999999999999999999999999997 999999998763
Q ss_pred ccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhhhhhHHHcCCCCCc
Q 010942 195 EEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSS 274 (497)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~ 274 (497)
-++ +.+. |.... ..+ +.+.... .....+.....++|++||||+|+||||+.
T Consensus 140 ve~-~~ds--------------~e~s~--es~---------~vs~~~~---~~~~~~~~~tlaTPaVRrlA~e~~idla~ 190 (474)
T KOG0558|consen 140 VED-SQDS--------------PEDSD--ESP---------AVSLGES---KQGEESLLKTLATPAVRRLAKENGIDLAE 190 (474)
T ss_pred ecc-CcCC--------------cccCC--ccc---------cccCCCC---chhhhhccccccCHHHHHHHHHhCCceEe
Confidence 322 1110 00000 000 0000000 01111223567999999999999999999
Q ss_pred ccccCCCCccchhhHHHHHHhcCCC--CCCC-----CCCCC--CCCCCC-CCcccccchhhhHHHHHhhhhccCCccEEE
Q 010942 275 IKGTGPNGLIVKADIEDYLASRGKE--VPAK-----APKGK--DVAAPA-LDYVDIPHSQIRKITASRLLFSKQTIPHYY 344 (497)
Q Consensus 275 V~GTG~~GrItk~DV~~~l~~~~~~--~~a~-----~~a~~--~~~~~~-~~~~~~pls~iRkaia~~m~~S~~~iP~~t 344 (497)
|+|||.+|||+|+||++|+.+.... .+.+ .+++. ..+.+. .....+|+.+.+|+|.+.|+++ ..||||.
T Consensus 191 v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~ 269 (474)
T KOG0558|consen 191 VTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFG 269 (474)
T ss_pred eeccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHH-hcCCccc
Confidence 9999999999999999999764211 1110 00000 001111 1234679999999999999998 8999999
Q ss_pred EeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccC--cEEEcCCcceEEEeecCCCeEe
Q 010942 345 LTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYV 422 (497)
Q Consensus 345 l~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~--~i~~~~~vnIgiAV~t~~GL~v 422 (497)
+..+||+|.|+++|+.++....+ .|+|+||++|++||+++||.+||.+|++++.+ .|++....|||||+||+.||+|
T Consensus 270 y~dEIn~~sLvklr~elk~~a~e-~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvV 348 (474)
T KOG0558|consen 270 YVDEINCDSLVKLRQELKENAKE-RGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVV 348 (474)
T ss_pred cccccChHHHHHHHHHHhhhhhh-cCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceec
Confidence 99999999999999999865444 48999999999999999999999999999864 7999999999999999999999
Q ss_pred eeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 423 PVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 423 PVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
|.|+|++.+|+.||++++.+|.+..+.|+|+++|++|||||+||+|. +|+++..|+|+|||+||.++|+|++-|
T Consensus 349 PNiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~-IGGtf~~P~i~~PeVAIgAlGrie~vP 422 (474)
T KOG0558|consen 349 PNIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGA-IGGTFASPVIMPPEVAIGALGRIEKVP 422 (474)
T ss_pred cCccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeeccc-ccccccCcccccchhhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999998 999999999999999999999998754
No 16
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=3.9e-65 Score=508.61 Aligned_cols=336 Identities=31% Similarity=0.448 Sum_probs=257.7
Q ss_pred ceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
.+++..|-++|+++||+|.+|++++||.|++|+.||+|||||.+++|.||.+|+|.++++++|| +|.+|+.|+.|....
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gd-tV~~g~~la~i~~ga 150 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGD-TVTPGQKLAKISPGA 150 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCC-cccCCceeEEecCCC
Confidence 6799999999999999999999999999999999999999999999999999999999999998 999999999984432
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhhhhhHHHcCCCCCcccc
Q 010942 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (497)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~V~G 277 (497)
.+.. .....|+...+..+++..+ .+.+++ ..+..+..|...++.++.+.....++ ....-+++-+++
T Consensus 151 Apa~-~~~~apa~~~pk~~~a~~a-~p~~~s----~~~p~~~apv~e~p~~p~~~~P~~~~-a~k~~v~~~~~~------ 217 (457)
T KOG0559|consen 151 APAK-GGASAPAKAEPKTAPAAAA-PPKPSS----KPPPKEAAPVAESPPAPSSPEPVPAS-AKKPSVAQPKPP------ 217 (457)
T ss_pred CCcc-ccccCCCccCCCCCCCCCC-CCCccC----CCCccccCCCCCCCCCCCCCCCCCcc-ccCccccCCCCC------
Confidence 2111 1011111100000000000 000000 00000000111000000010000001 000000000000
Q ss_pred cCCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHH
Q 010942 278 TGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGL 357 (497)
Q Consensus 278 TG~~GrItk~DV~~~l~~~~~~~~a~~~a~~~~~~~~~~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~l 357 (497)
+ .....+.-...+++|++||+.||.||.+|.++....|.+.++||++|+++
T Consensus 218 ---------------------------p--~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~m 268 (457)
T KOG0559|consen 218 ---------------------------P--SEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEM 268 (457)
T ss_pred ---------------------------c--ccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 0 01111223456889999999999999999888888888999999999999
Q ss_pred HHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHH
Q 010942 358 RNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIA 437 (497)
Q Consensus 358 R~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa 437 (497)
|+++++.+-+++|+|+.|+.+|+||++.||++.|.+|+.++++.|+|+++|||+|||+|++||+||||||++.++++||.
T Consensus 269 Rk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE 348 (457)
T KOG0559|consen 269 RKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIE 348 (457)
T ss_pred HHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCeeEEeecceeEEEeecCCceeeeeecccccccHHHHH
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 438 EEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 438 ~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
.+|..|..|||+|+|+.+||.||||||||=|. ||..+.||||||||+||||+.+|.+||
T Consensus 349 ~~i~~L~~KAr~g~laiedM~gGTFTISNGGV-fGSL~gTPIINpPQsAILGmHgI~eRP 407 (457)
T KOG0559|consen 349 KTIAGLGKKARDGKLAIEDMAGGTFTISNGGV-FGSLYGTPIINPPQSAILGMHGIKERP 407 (457)
T ss_pred HHHHHHHHhhccCceeeeeccCceEEEeCCcE-eeeeccCcccCCchhhhhhcccccccc
Confidence 99999999999999999999999999999665 999999999999999999999999997
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=6e-63 Score=509.73 Aligned_cols=245 Identities=31% Similarity=0.475 Sum_probs=214.6
Q ss_pred CCccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHHhcCCCC-CC-CCCCCCCCCCC-----CCCcccccchh
Q 010942 252 EDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEV-PA-KAPKGKDVAAP-----ALDYVDIPHSQ 324 (497)
Q Consensus 252 ~~~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~~~~~~~-~a-~~~a~~~~~~~-----~~~~~~~pls~ 324 (497)
..++++||+||+||+|+||||+.|+|||++|||+++||++|+....... ++ +.+.......+ ....+.+|+++
T Consensus 46 ~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 125 (347)
T PRK14843 46 TNVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTP 125 (347)
T ss_pred cccccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCcH
Confidence 3477899999999999999999999999999999999999985422111 01 00000000000 11234579999
Q ss_pred hhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcccccc--CcE
Q 010942 325 IRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYI 402 (497)
Q Consensus 325 iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~--~~i 402 (497)
|||.||++|.+||+++||||+..++|+++|+++|+++++.+.+.+|.|+|+++||+||++.||++||.+|++|++ +.|
T Consensus 126 ~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i 205 (347)
T PRK14843 126 MRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTI 205 (347)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeE
Confidence 999999999999999999999999999999999999986555555889999999999999999999999999984 469
Q ss_pred EEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCC
Q 010942 403 RQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINP 482 (497)
Q Consensus 403 ~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInp 482 (497)
+++++|||||||++++||+||||||||+|||.||++++++|+++||+|+|+++||+||||||||+|| ||+++|||||||
T Consensus 206 ~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~-~G~~~~tpIInp 284 (347)
T PRK14843 206 ITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGM-FGVQSFGPIINQ 284 (347)
T ss_pred EEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCC-CcccceeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CceEEEEeccceecC
Q 010942 483 PQSGILAVGSGKDQL 497 (497)
Q Consensus 483 pq~aILgvG~i~~r~ 497 (497)
||+||||||++++||
T Consensus 285 Pq~aIlgvG~i~~~p 299 (347)
T PRK14843 285 PNSAILGVSSTIEKP 299 (347)
T ss_pred CceEEEecCCcceee
Confidence 999999999999886
No 18
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.6e-62 Score=497.32 Aligned_cols=242 Identities=29% Similarity=0.467 Sum_probs=213.0
Q ss_pred cccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHHhcCC--CC--CCCCCC-CCC-----C-C-CCCCCcccccc
Q 010942 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGK--EV--PAKAPK-GKD-----V-A-APALDYVDIPH 322 (497)
Q Consensus 255 v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~~~~~--~~--~a~~~a-~~~-----~-~-~~~~~~~~~pl 322 (497)
+++||+||+||+|+||||+.|+|||++|||+++||++|+.+... .+ +++.+. ... + + .+....+.+|+
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKV 81 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceeccC
Confidence 46899999999999999999999999999999999999754221 10 000000 000 0 0 01112345799
Q ss_pred hhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcccccc--C
Q 010942 323 SQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--E 400 (497)
Q Consensus 323 s~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~--~ 400 (497)
++||++|+++|.+|++++||+|+..++|+++|+++|+++++.+.+++|.|+||++||+||+++||++||.+|++|++ +
T Consensus 82 s~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~ 161 (306)
T PRK11857 82 APIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATS 161 (306)
T ss_pred cHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCC
Confidence 99999999999999999999999999999999999999997655556899999999999999999999999999985 3
Q ss_pred cEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeecc
Q 010942 401 YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAII 480 (497)
Q Consensus 401 ~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPII 480 (497)
.|+++++|||||||++++||+||||+|||+|||.||++++++|++++|+|+|+++||+||||||||+|| ||+.+|+|||
T Consensus 162 ~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~-~G~~~~tpiI 240 (306)
T PRK11857 162 ELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGS-VGSLYGVPVI 240 (306)
T ss_pred EEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCC-CCccceeccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCceEEEEeccceecC
Q 010942 481 NPPQSGILAVGSGKDQL 497 (497)
Q Consensus 481 nppq~aILgvG~i~~r~ 497 (497)
||||+||||+|++++||
T Consensus 241 n~pq~aILgvG~i~~~p 257 (306)
T PRK11857 241 NYPELAIAGVGAIIDKA 257 (306)
T ss_pred CCCccceeecccceEEe
Confidence 99999999999999886
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=1.1e-49 Score=391.12 Aligned_cols=180 Identities=48% Similarity=0.787 Sum_probs=157.5
Q ss_pred CcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcc
Q 010942 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (497)
Q Consensus 316 ~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa 395 (497)
+++++|++++|++||++|.+|++++||+|++.++|+++|+++|+++++..... +.++|+++|++||+++||++||.+|+
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~-~~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEP-GGKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHT-TST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhh-ccCCChhHeeeehHhhhhHHHHHhcc
Confidence 45678999999999999999999999999999999999999999999766543 55999999999999999999999999
Q ss_pred ccccCc-EEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcc
Q 010942 396 SWADEY-IRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIK 474 (497)
Q Consensus 396 ~~~~~~-i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~ 474 (497)
+|+++. |++++++||||||++++||++|||+|++++|+.||++++++++++||+|+|+++||+||||||||+|+ ||++
T Consensus 82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~-~g~~ 160 (231)
T PF00198_consen 82 SWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGM-FGVE 160 (231)
T ss_dssp EEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGG-TT-S
T ss_pred ccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCC-CCcc
Confidence 999887 99999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eeeeccCCCceEEEEeccceecC
Q 010942 475 QFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 475 ~ftPIInppq~aILgvG~i~~r~ 497 (497)
+|+|||||||+||||+|++++||
T Consensus 161 ~~~pii~~pq~ail~vG~i~~~p 183 (231)
T PF00198_consen 161 SFTPIINPPQVAILGVGAIRDRP 183 (231)
T ss_dssp CEE----TTSSEEEEEEEEEEEE
T ss_pred eeEccCCcccceEEEecceEEEE
Confidence 99999999999999999999875
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=5.1e-42 Score=377.68 Aligned_cols=179 Identities=22% Similarity=0.305 Sum_probs=170.3
Q ss_pred cccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccc
Q 010942 317 YVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396 (497)
Q Consensus 317 ~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~ 396 (497)
....|+++++++|+++|..| ..+|++|...+|+++.|+++|+.+|+.+...+|.|+||++||+||+++||++||.+|++
T Consensus 115 ~~~~~LrG~a~aiAkNM~aS-L~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas 193 (1228)
T PRK12270 115 DEVTPLRGAAAAVAKNMDAS-LEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH 193 (1228)
T ss_pred cceeecccHHHHHHHHHHhh-hccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence 35679999999999999999 55999999999999999999999999888888999999999999999999999999999
Q ss_pred cc--cCc--EEEcCCcceEEEeecC-----CCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecC
Q 010942 397 WA--DEY--IRQFKNVNINVAVQTE-----NGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNL 467 (497)
Q Consensus 397 ~~--~~~--i~~~~~vnIgiAV~t~-----~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNl 467 (497)
|+ +++ |+++++||||||||++ +||+|||||+|++|++.||+.++.+|+.|||+|||+++||+||||||||+
T Consensus 194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~ 273 (1228)
T PRK12270 194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP 273 (1228)
T ss_pred eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence 98 444 9999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred CcccCcceeeeccCCCceEEEEeccceecC
Q 010942 468 GGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 468 G~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
|| ||+.+|+|||||||+||||||++..+|
T Consensus 274 G~-iGt~~ftPILnppQ~AILGVGAi~~p~ 302 (1228)
T PRK12270 274 GG-IGTVHSVPRLMKGQGAIIGVGAMEYPA 302 (1228)
T ss_pred Cc-ccccceeeeecCCceEEEeccccccCc
Confidence 99 999999999999999999999998653
No 21
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.74 E-value=9.5e-18 Score=172.41 Aligned_cols=77 Identities=39% Similarity=0.649 Sum_probs=74.0
Q ss_pred ceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..+|.||++|++|+||+|++|+|++||.|++||+|++||+||+++||+||.+|+|.++++++|+ .|.+|++|+.+.+
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~-~v~~g~~l~~i~~ 78 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE-TLPVGALLAVVAD 78 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCC-EeCCCCEEEEEec
Confidence 3699999999999999999999999999999999999999999999999999999999999997 9999999999843
No 22
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.73 E-value=7.7e-18 Score=137.28 Aligned_cols=74 Identities=42% Similarity=0.721 Sum_probs=71.6
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.+|.+|.+|..+.+++|.+|+|++||.|++||+||+|||||+.++|+||.+|+|.++++++|+ .|.+|++|++|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~-~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGD-TVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTE-EEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence 379999999999999999999999999999999999999999999999999999999999997 99999999975
No 23
>PRK06748 hypothetical protein; Validated
Probab=99.64 E-value=8.5e-16 Score=127.68 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=60.3
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEe-CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVET-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEt-dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
..|+|.+|+|++||.|++||+|++||| ||+++||+||.+|+|.+|++++|+ .|++|++|+++.
T Consensus 11 ~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd-~V~vG~~la~I~ 74 (83)
T PRK06748 11 CYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQ-AIADQKLLITVR 74 (83)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCC-EECCCCEEEEEE
Confidence 359999999999999999999999999 999999999999999999999998 899999999983
No 24
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.61 E-value=8.9e-15 Score=157.07 Aligned_cols=83 Identities=54% Similarity=0.870 Sum_probs=77.1
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCC
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
++|.||++|++|+||+|.+|+|++||.|++||.|++|||||+++||+||.+|+|.++++++|++.|++|++|+++.++++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999537999999999976655
Q ss_pred ccc
Q 010942 199 DIP 201 (497)
Q Consensus 199 ~~~ 201 (497)
+..
T Consensus 83 ~~~ 85 (464)
T PRK11892 83 SAS 85 (464)
T ss_pred ccc
Confidence 544
No 25
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.49 E-value=1.6e-13 Score=110.84 Aligned_cols=62 Identities=23% Similarity=0.387 Sum_probs=59.7
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+ .|..|++|+++
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~-~V~~G~~l~~i 70 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGD-VIQAGDLIAVI 70 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 359999999999999999999999999999999999999999999999997 89999999986
No 26
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.47 E-value=3.3e-13 Score=108.94 Aligned_cols=72 Identities=33% Similarity=0.625 Sum_probs=68.9
Q ss_pred EecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 121 i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
|.+|+++.++.+|++.+|++++||.|++||+|+++|++|+.++|.||.+|+|.++.++.|+ .+..|+.|+.+
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~-~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGT-KVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEC
Confidence 5689999999999999999999999999999999999999999999999999999999997 89999999863
No 27
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.44 E-value=3.8e-13 Score=149.98 Aligned_cols=75 Identities=31% Similarity=0.438 Sum_probs=72.0
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
.+|.||+|| |+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+ .|++|++|++|.++
T Consensus 3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~-~V~~G~~l~~i~~~ 77 (633)
T PRK11854 3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGD-KVETGALIMIFESA 77 (633)
T ss_pred ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCC-EEeCCCEEEEEecc
Confidence 489999999 9999999999999999999999999999999999999999999999999997 99999999998554
No 28
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.42 E-value=4.7e-13 Score=148.01 Aligned_cols=78 Identities=36% Similarity=0.564 Sum_probs=74.3
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
++|.||+||++|.||+|++|+|++||.|+.||+||+|||||++++|+||.+|+|.++++++|+ .|++|++|+++.+.+
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd-~v~vG~~ia~i~~~~ 80 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDD-TVDIGGEIAIIGEAG 80 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCC-EEeeeeeEEEEeecc
Confidence 579999999999999999999999999999999999999999999999999999999999997 899999999886543
No 29
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.40 E-value=5.7e-13 Score=121.66 Aligned_cols=62 Identities=24% Similarity=0.437 Sum_probs=60.0
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.-|++.+.+|++||+|++||+||.||+||+.+||+||.+|+|.+|++++|+ .|..||+|+.|
T Consensus 77 m~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~-~Ve~G~~L~~I 138 (140)
T COG0511 77 MVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD-PVEYGDPLAVI 138 (140)
T ss_pred cceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCC-ccCCCCEEEEe
Confidence 459999999999999999999999999999999999999999999999998 99999999987
No 30
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.37 E-value=2.9e-12 Score=103.05 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=59.2
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
-|+|.+|++++||.|++||+|++||+||+.+++.+|.+|+|.++++++|+ .|..|++|+.+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~-~V~~g~~l~~i 69 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGD-FVNEGDVLLEI 69 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCC-EECCCCEEEEE
Confidence 48999999999999999999999999999999999999999999999997 99999999986
No 31
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.33 E-value=7.5e-13 Score=94.76 Aligned_cols=38 Identities=53% Similarity=0.782 Sum_probs=34.4
Q ss_pred ccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHH
Q 010942 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIED 291 (497)
Q Consensus 254 ~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~ 291 (497)
++++||+||++|+|+|||+++|+|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 67899999999999999999999999999999999984
No 32
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.29 E-value=9.9e-12 Score=136.65 Aligned_cols=76 Identities=33% Similarity=0.521 Sum_probs=72.6
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
++|.||++|+ |.+|+|++|+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++|+ .|.+|++|+.+.+.
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd-~V~~G~~L~~i~~~ 78 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGD-TVSVGGLLAVIEAA 78 (547)
T ss_pred ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCC-EecCCceeeEeccc
Confidence 5799999999 9999999999999999999999999999999999999999999999999997 89999999988543
No 33
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.27 E-value=1.6e-11 Score=110.56 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=59.6
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+ .|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQ-VVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEe
Confidence 458999999999999999999999999999999999999999999999997 89999999876
No 34
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.23 E-value=2.7e-11 Score=133.07 Aligned_cols=74 Identities=35% Similarity=0.532 Sum_probs=70.9
Q ss_pred EEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+|.||+||.. .+|+|++|+|++||.|+.||+|++||+||+.++|.|+.+|+|.++++++|+ .|++|++|+++..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd-~V~~G~~La~i~~ 75 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGD-TLPVGGVIATLEV 75 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCC-EEeccceEEEEec
Confidence 6899999986 999999999999999999999999999999999999999999999999997 9999999998843
No 35
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.21 E-value=4.1e-11 Score=110.94 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=59.5
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|.+|+|++||.|++||.|+++|+||+.++|.||.+|+|.++++++|+ .|..|++|+.|
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGD-TVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCC-EECCCCEEEEe
Confidence 358999999999999999999999999999999999999999999999997 99999999976
No 36
>PRK07051 hypothetical protein; Validated
Probab=99.20 E-value=7.6e-11 Score=97.54 Aligned_cols=62 Identities=27% Similarity=0.407 Sum_probs=58.2
Q ss_pred eeEEEE-------EEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 132 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 132 eg~I~~-------w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
.|++.+ |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+ .|..|++|+++.
T Consensus 11 ~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~-~V~~G~~l~~i~ 79 (80)
T PRK07051 11 PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGE-PVEAGQVLARIE 79 (80)
T ss_pred ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEe
Confidence 356777 99999999999999999999999999999999999999999997 899999999873
No 37
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.19 E-value=1.1e-10 Score=91.46 Aligned_cols=62 Identities=27% Similarity=0.498 Sum_probs=59.1
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.+|+|.+|++++||.|++||.|++||++|...+|.||.+|+|.++.+++|+ .|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGD-QVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence 569999999999999999999999999999999999999999999999997 89999999864
No 38
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.16 E-value=9.1e-11 Score=115.89 Aligned_cols=61 Identities=31% Similarity=0.502 Sum_probs=58.5
Q ss_pred eeEEEE-------EEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 132 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 132 eg~I~~-------w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.|++.+ |+|++||.|++||+|++||+||+.++|+|+.+|+|.+|++++|+ .|.+|++|++|
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD-~V~vGqpL~~I 272 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGK-PVSVDTPLFVI 272 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCC-EeCCCCEEEEe
Confidence 478888 99999999999999999999999999999999999999999997 89999999987
No 39
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.15 E-value=1e-10 Score=108.76 Aligned_cols=61 Identities=28% Similarity=0.473 Sum_probs=57.7
Q ss_pred eeEEEE-------EEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 132 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 132 eg~I~~-------w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
-|++.. |+|++||.|++||+||.||+||+.++|+|+.+|+|.+|++++|+ .|..|++|+.|
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~-~V~~Gq~L~~i 155 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ-PVEYGQPLIVI 155 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC-EECCCCEEEEE
Confidence 377775 99999999999999999999999999999999999999999997 99999999976
No 40
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.11 E-value=2.2e-10 Score=106.42 Aligned_cols=60 Identities=27% Similarity=0.495 Sum_probs=56.8
Q ss_pred eEEEE-------EEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 133 GNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 133 g~I~~-------w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
|++.. |+|++||.|++||+||.||+||+.++|+||.+|+|.++++++|+ .|..|++|+.+
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~-~V~~Gq~L~~i 154 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ-PVEFGQPLFVI 154 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC-EeCCCCEEEEe
Confidence 56665 99999999999999999999999999999999999999999997 99999999876
No 41
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.11 E-value=8.9e-10 Score=85.85 Aligned_cols=73 Identities=56% Similarity=0.865 Sum_probs=69.8
Q ss_pred EEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
++.+|+++..+.+|+|..|++..|+.|..|++|+.+|++|+..++.++.+|++.+..+.+|+ .+..|++|+++
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~-~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGD-TVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcC-EeCCCCEEEEC
Confidence 57899999999999999999999999999999999999999999999999999999999997 89999999863
No 42
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.05 E-value=5.2e-10 Score=123.41 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=60.3
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+.|.
T Consensus 532 m~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd-~V~~G~~L~~I~ 594 (596)
T PRK14042 532 IPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGD-KVTPGQVLIRVE 594 (596)
T ss_pred cceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcC-EECCCCEEEEEe
Confidence 349999999999999999999999999999999999999999999999997 899999999873
No 43
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.93 E-value=2.1e-09 Score=127.45 Aligned_cols=62 Identities=26% Similarity=0.420 Sum_probs=59.8
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|++|
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~-~V~~G~~l~~i 1200 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGD-MVDAGDIVAVL 1200 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCC-EeCCCCEEEEe
Confidence 458999999999999999999999999999999999999999999999998 89999999976
No 44
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.90 E-value=2.3e-09 Score=118.53 Aligned_cols=59 Identities=31% Similarity=0.468 Sum_probs=56.5
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l 190 (497)
..|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+ .|.+|++|
T Consensus 524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd-~V~~G~~l 582 (582)
T TIGR01108 524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGD-AVSVGQVL 582 (582)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCCC
Confidence 459999999999999999999999999999999999999999999999998 89999875
No 45
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.87 E-value=5.5e-09 Score=115.69 Aligned_cols=62 Identities=27% Similarity=0.452 Sum_probs=59.7
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|++|+|++||.|++||+|++||+||+..+|.||.+|+|.++.+++|+ .|..|++|+++
T Consensus 531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I 592 (593)
T PRK14040 531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGD-AVAVGDTLLTL 592 (593)
T ss_pred ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 458999999999999999999999999999999999999999999999997 99999999986
No 46
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.83 E-value=7.8e-09 Score=121.79 Aligned_cols=62 Identities=18% Similarity=0.337 Sum_probs=59.6
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|++|
T Consensus 1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i 1142 (1143)
T TIGR01235 1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGE-QIDAKDLLLVL 1142 (1143)
T ss_pred CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 349999999999999999999999999999999999999999999999998 89999999976
No 47
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.70 E-value=3.8e-08 Score=109.22 Aligned_cols=62 Identities=26% Similarity=0.441 Sum_probs=59.7
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i 590 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGD-RVNPGDVLMEI 590 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEe
Confidence 358999999999999999999999999999999999999999999999997 99999999987
No 48
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.60 E-value=1e-07 Score=112.82 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=59.3
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.|+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~-~V~~g~~l~~i 1144 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGD-QVEAGDLLVEL 1144 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 49999999999999999999999999999999999999999999999998 89999999987
No 49
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.53 E-value=1.6e-07 Score=101.00 Aligned_cols=63 Identities=27% Similarity=0.442 Sum_probs=60.2
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
..|+|+...|++|++|.+||+|+.+|.||++..|.||.+|+|+++.+.+|+ .|.+|++|+.+.
T Consensus 582 MpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd-~V~~g~vLve~~ 644 (645)
T COG4770 582 MPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGD-QVAVGTVLVEFE 644 (645)
T ss_pred CCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCC-ccccCceEEEec
Confidence 458999999999999999999999999999999999999999999999998 899999999873
No 50
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.35 E-value=6.2e-07 Score=99.40 Aligned_cols=60 Identities=27% Similarity=0.479 Sum_probs=58.3
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
|.|++..|++||.|++||+|+.+|+||++..|.||.+|+|.+++|..|+ .|..|+.|..+
T Consensus 1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd-~i~~gDLLi~~ 1147 (1149)
T COG1038 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGD-QIDGGDLLVVV 1147 (1149)
T ss_pred CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCC-ccccCceEEEc
Confidence 8999999999999999999999999999999999999999999999998 89999999865
No 51
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.21 E-value=2.5e-06 Score=72.94 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=49.6
Q ss_pred eEEecCCCCCCCceeEEEE-EEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCC
Q 010942 119 QEIGMPSLSPTMQEGNIAR-WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGS 181 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~-w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~ 181 (497)
..|.|=+.+..+ =|+|.. |++++|+.|++||.|++||++|++.+|.||.+|+|.++..+.++
T Consensus 16 ~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~ 78 (96)
T cd06848 16 ATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD 78 (96)
T ss_pred EEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence 344444444433 366776 67777999999999999999999999999999999998876664
No 52
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.04 E-value=6.9e-06 Score=89.71 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=59.0
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|+++.|++|+.|++||+||.+.+||+++-|.||.+|+|+++.+..|+ .+.-|+.|+++
T Consensus 1113 MpG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~-~~~g~DL~~~~ 1174 (1176)
T KOG0369|consen 1113 MPGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGT-KVEGGDLIVEL 1174 (1176)
T ss_pred CCCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCC-cccccceEEEc
Confidence 349999999999999999999999999999999999999999999999997 89999999876
No 53
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.95 E-value=1.7e-05 Score=69.70 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=40.4
Q ss_pred eEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCC
Q 010942 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (497)
Q Consensus 133 g~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G 180 (497)
|.|+.... ++|+.|++||+|++||++|++.+|.||.+|+|.++..+..
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 44555544 6799999999999999999999999999999999864443
No 54
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.83 E-value=3.6e-05 Score=68.09 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=38.5
Q ss_pred eEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEe
Q 010942 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (497)
Q Consensus 133 g~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~ 176 (497)
|.|+.... ++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus 32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 45555554 669999999999999999999999999999999884
No 55
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=97.81 E-value=0.00042 Score=67.52 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=97.5
Q ss_pred CCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccC-cEEEcCCcceEEEeec
Q 010942 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE-YIRQFKNVNINVAVQT 416 (497)
Q Consensus 338 ~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~-~i~~~~~vnIgiAV~t 416 (497)
..-|.++++.++|+|+|.+..++ .++++...++.++.+|+.++|+++-++.++ .+.+|+.++.+.+|-.
T Consensus 23 ~~~p~~svT~~lDvT~l~~~~K~----------~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~ 92 (206)
T PF00302_consen 23 FDNPYFSVTVNLDVTNLYKYAKE----------KGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFH 92 (206)
T ss_dssp TSBEEEEEEEEEE-HHHHHHHHH----------TT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEE
T ss_pred CCCceEecceeEEhHHHHHHHHH----------cCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEe
Confidence 45689999999999999876443 248899999999999999999999999887 9999999999999975
Q ss_pred -CCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcC-CCCCCC-CCCCcEEEecCCcccCcceeeec----cCCC--ceEE
Q 010942 417 -ENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKPQD-YEGGTFTVTNLGGPFGIKQFCAI----INPP--QSGI 487 (497)
Q Consensus 417 -~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g-~L~~~d-~~ggTfTISNlG~~~G~~~ftPI----Inpp--q~aI 487 (497)
+++.+.-+.- .-.-++.++.+...+.++++++. .+.++. ...-.|-+|++= ...||.+ -+.+ -.-+
T Consensus 93 ~~~~tFs~~~~-~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lP----W~~FTs~~~~~~~~~~~~~P~ 167 (206)
T PF00302_consen 93 KDDETFSFCWT-EYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLP----WVSFTSFSHPVPNGKDDSIPR 167 (206)
T ss_dssp TTTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEET----TS--SEEEEEESSTTT-SS-E
T ss_pred CCCCeEEEEEe-cCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEeccc----ceecccccccccCCCcccccE
Confidence 4565443322 23348999999999999998764 465543 444578888743 3334433 2122 2456
Q ss_pred EEecccee
Q 010942 488 LAVGSGKD 495 (497)
Q Consensus 488 LgvG~i~~ 495 (497)
+..|...+
T Consensus 168 it~GK~~~ 175 (206)
T PF00302_consen 168 ITWGKYFE 175 (206)
T ss_dssp EEEE--EE
T ss_pred EEeeeeEe
Confidence 77776654
No 56
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.79 E-value=7.6e-05 Score=79.84 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=57.9
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
-|.|.+++|++||.|.+||.|+.+|.||+..-+.||.+|++..+.++.|+ +|.-|.+|..+
T Consensus 609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~-~v~~g~vlv~~ 669 (670)
T KOG0238|consen 609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGA-TVGDGAVLVEF 669 (670)
T ss_pred CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCc-ccCCCceEEEe
Confidence 36899999999999999999999999999999999999999999999998 89999998765
No 57
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.69 E-value=7.1e-05 Score=68.92 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=48.1
Q ss_pred EEecCCCCCCCceeEEEEEEcC-CCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCC
Q 010942 120 EIGMPSLSPTMQEGNIARWLKK-EGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (497)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~w~v~-~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G 180 (497)
.|-|=+.... .=|.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++..+-.
T Consensus 32 ~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~ 92 (144)
T PRK13380 32 TVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE 92 (144)
T ss_pred EEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence 4444444432 23678888886 899999999999999999999999999999998875543
No 58
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.57 E-value=0.0002 Score=73.70 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=31.7
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
..|.||++|+|..+.+++|+ .|..|++|+.+.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQ-VVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCC-EeCCCCeeEEEEcCC
Confidence 46999999999999999997 999999999987654
No 59
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.57 E-value=0.00012 Score=85.84 Aligned_cols=66 Identities=24% Similarity=0.490 Sum_probs=60.2
Q ss_pred CCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 129 ~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
+-..|++++|+|+.|+.|..||+-+|||.||+.|.+.++.+|+|. ...++|+ .+..|++||.+..+
T Consensus 690 sPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~-~i~aG~vlakL~lD 755 (2196)
T KOG0368|consen 690 SPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGD-AIEAGSVLAKLTLD 755 (2196)
T ss_pred CCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCC-ccCccceeEEeecC
Confidence 346799999999999999999999999999999999999999996 5669998 99999999988543
No 60
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.55 E-value=4.2e-05 Score=80.02 Aligned_cols=42 Identities=40% Similarity=0.731 Sum_probs=39.4
Q ss_pred CccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHH
Q 010942 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (497)
Q Consensus 253 ~~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~ 294 (497)
+++++||.+|++|+++|||++.|+|||++|||+++||++|..
T Consensus 4 ~~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~ 45 (347)
T PRK14843 4 DKLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKD 45 (347)
T ss_pred ccccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhcc
Confidence 467789999999999999999999999999999999999865
No 61
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.55 E-value=0.00032 Score=74.90 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=57.4
Q ss_pred ceeEEEEEE-cCCCCeecCCCeEEEEEeC------------------------------------------------Cee
Q 010942 131 QEGNIARWL-KKEGDKVSPGEVLCEVETD------------------------------------------------KAT 161 (497)
Q Consensus 131 ~eg~I~~w~-v~~Gd~V~~gd~l~eVEtd------------------------------------------------Ka~ 161 (497)
..|.|.+++ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 459999998 9999999999999999831 113
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
..|.||++|+|.++.+.+|+ .|..|++|+.|.+.+
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~-~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGMD 244 (409)
T ss_pred EEEECCCCeEEEEEECCCCC-EECCCCeEEEEEcCC
Confidence 57999999999999999997 999999999987654
No 62
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=97.51 E-value=0.0012 Score=64.81 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=88.3
Q ss_pred cEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEeecCC-C
Q 010942 341 PHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTEN-G 419 (497)
Q Consensus 341 P~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV~t~~-G 419 (497)
|+|.+++++|+|+|.+..++ .++++...++.|+.+|+-++|+++-++.++.+..++.++.+.+|-..+ +
T Consensus 31 ~~fsiT~~iDiT~l~~~~K~----------~~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~~ 100 (219)
T PRK13757 31 CTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTE 100 (219)
T ss_pred CceEEEEEEEHHHHHHHHHH----------cCCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCCc
Confidence 44999999999999865433 247888999999999999999999999999999999999999998554 4
Q ss_pred eEeeeecCcCCCCHHHHHHHHHHHHHHHhcC-CCCCCCCCCCcEEEec
Q 010942 420 LYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKPQDYEGGTFTVTN 466 (497)
Q Consensus 420 L~vPVI~~a~~~sl~eIa~ei~~l~~kar~g-~L~~~d~~ggTfTISN 466 (497)
.+.- +.-.-.-++.++.+.....++++.+. .+-++....-.|.||.
T Consensus 101 tFs~-~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~ 147 (219)
T PRK13757 101 TFSS-LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSA 147 (219)
T ss_pred eEEE-EEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeec
Confidence 4432 33333457888888888888888876 4655444445777766
No 63
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.49 E-value=0.00018 Score=72.97 Aligned_cols=66 Identities=24% Similarity=0.427 Sum_probs=57.2
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa-------------------------------------------------- 160 (497)
.+|.|.+++|++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 459999999999999999999999976321
Q ss_pred ---------------------eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 161 ---------------------TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 161 ---------------------~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
...|.||.+|+|..+.+..|+ .+..|++|+.+.+.+
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGA-YVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCc-eeCCCCcEEEEEcCC
Confidence 236999999999999999997 999999999886543
No 64
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.47 E-value=0.00027 Score=72.72 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=57.5
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa-------------------------------------------------- 160 (497)
..|.|.+++|++||.|++||+|++++....
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 569999999999999999999999987310
Q ss_pred --------------------eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 161 --------------------TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 161 --------------------~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
...|.||++|+|.++.+++|+ .|..|++|+.+++.+
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~-~V~~g~~l~~Iv~~~ 189 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGE-FITRGSTAVALVKQN 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCC-EecCCCeeEEEEeCC
Confidence 246999999999999999998 999999999887643
No 65
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.36 E-value=0.00042 Score=72.10 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=31.6
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
..|.||++|+|.++.+++|+ .|..|++|+.|++.+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~-~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGE-FAAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCCC-CcCCCCeEEEEecCC
Confidence 36899999999999999997 999999999997654
No 66
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.33 E-value=0.0004 Score=62.59 Aligned_cols=43 Identities=28% Similarity=0.357 Sum_probs=37.5
Q ss_pred eEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEE
Q 010942 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI 175 (497)
Q Consensus 133 g~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i 175 (497)
|.|+.+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v 80 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEV 80 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEE
Confidence 34444433 67999999999999999999999999999999999
No 67
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.23 E-value=0.00042 Score=62.52 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=38.5
Q ss_pred eEEEEEE-cCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeC
Q 010942 133 GNIARWL-KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178 (497)
Q Consensus 133 g~I~~w~-v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~ 178 (497)
|.|..+. .++|+.|++||+++.||++|+..+|.||.+|+|.++.-+
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~ 82 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA 82 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence 3444443 267999999999999999999999999999999988543
No 68
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.21 E-value=0.00073 Score=71.77 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=31.7
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
..|.||++|+|..+.+++|+ .|..|++|+.+++.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~-~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGA-QISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCC-EeCCCCeEEEEEeCC
Confidence 36999999999999999998 999999999987654
No 69
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.14 E-value=0.00084 Score=69.37 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=31.0
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
..|.||++|+|..+.+.+|+ .|..|++|+.+.+.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~-~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGT-MLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCC-CcCCCCeEEEEecC
Confidence 47999999999999999997 99999999988654
No 70
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.07 E-value=0.0012 Score=69.76 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=54.9
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa-------------------------------------------------- 160 (497)
..|+|.++++++||.|++||+|+.+++.-.
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 459999999999999999999999987311
Q ss_pred ---------------------eeEEecCcceEEEEEeeCCCCeeecCC--CEEEEEecc
Q 010942 161 ---------------------TVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVEE 196 (497)
Q Consensus 161 ---------------------~~ev~ap~~G~l~~i~~~~G~~~v~vG--~~l~~i~~~ 196 (497)
-..|.||++|+|.+..+++|+ .|..| ++|+.+.+.
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~-~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGA-LVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCC-eecCCCCcceEEEEec
Confidence 136999999999999999997 89886 488877543
No 71
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.92 E-value=0.00096 Score=50.29 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.6
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
..|+|.+|+|++||.|++||+|+++++...
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 369999999999999999999999987543
No 72
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.91 E-value=0.0022 Score=57.41 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=34.4
Q ss_pred eEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEe
Q 010942 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (497)
Q Consensus 133 g~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~ 176 (497)
|.|+.+.. ++|+.|++|++++.||++|.+.++.||.+|+|.++.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 45555554 669999999999999999999999999999999885
No 73
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.89 E-value=0.0024 Score=67.50 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=55.3
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCC---------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK--------------------------------------------------- 159 (497)
..|.|.++++++||.|++||+|++++..-
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 35999999999999999999999998631
Q ss_pred --------------------eeeEEecCcceEEEEEeeCCCCeeecCCC--EEEEEeccC
Q 010942 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGE--VIAITVEEE 197 (497)
Q Consensus 160 --------------------a~~ev~ap~~G~l~~i~~~~G~~~v~vG~--~l~~i~~~~ 197 (497)
....|.||++|+|.+..++.|+ .|..|+ +|+.+.+.+
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~~~ 206 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGA-LVTANQADSLVTVQRLD 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCC-eECCCCCcceEEEEecC
Confidence 1147999999999999999997 999985 577775443
No 74
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.82 E-value=0.0021 Score=48.46 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=30.9
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
++.|.+|.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~-~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQ-QVKKGDVLLVLDS 35 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCC-EEcCCCEEEEECc
Confidence 467899999999999999998 9999999999843
No 75
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.81 E-value=0.0029 Score=67.28 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=54.2
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa-------------------------------------------------- 160 (497)
..|.|.++++++||.|++||+|++|+....
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 459999999999999999999999975310
Q ss_pred ---------------------eeEEecCcceEEEEEeeCCCCeeecCCCE--EEEEecc
Q 010942 161 ---------------------TVEMECMEEGYLAKIVKGDGSKEIKVGEV--IAITVEE 196 (497)
Q Consensus 161 ---------------------~~ev~ap~~G~l~~i~~~~G~~~v~vG~~--l~~i~~~ 196 (497)
...|.||++|+|.+..++.|+ .|..|++ |+.+.+.
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~~ 209 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQL 209 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCC-EECCCCCceEEEEEec
Confidence 135999999999999999997 9999985 6666443
No 76
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=96.72 E-value=0.0038 Score=65.54 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=25.5
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
..|.|.+|++++||.|++||+|++++..
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 3499999999999999999999999873
No 77
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=96.66 E-value=0.0036 Score=67.06 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=53.7
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa-------------------------------------------------- 160 (497)
.+|.|.++++++||.|++||+|++|.....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 469999999999999999999999965310
Q ss_pred ---------------------eeEEecCcceEEEEEeeCCCCeeecCCC--EEEEEec
Q 010942 161 ---------------------TVEMECMEEGYLAKIVKGDGSKEIKVGE--VIAITVE 195 (497)
Q Consensus 161 ---------------------~~ev~ap~~G~l~~i~~~~G~~~v~vG~--~l~~i~~ 195 (497)
...|.||++|+|..+.+..|+ .|..|+ +|+.+.+
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~-~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGN-QISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCc-eecCCCCceeEEEec
Confidence 236999999999999999997 899985 5766644
No 78
>PRK12784 hypothetical protein; Provisional
Probab=96.48 E-value=0.016 Score=47.40 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=57.7
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEe-CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVET-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEt-dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
-.|+|.+.++.++++|-+=++|+-|++ |+.-..|.--++|.|.-+.+++|+ .|..+..|+.+.+
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq-~i~~dtlL~~~ed 76 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQ-QIHTDTLLVRLED 76 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCc-eecCCcEEEEEee
Confidence 468999999999999999999999999 556667889999999999999997 8999999998743
No 79
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.40 E-value=0.005 Score=55.57 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=39.0
Q ss_pred eEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEe
Q 010942 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (497)
Q Consensus 133 g~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~ 176 (497)
|.|+-... ++|+.|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 56666654 789999999999999999999999999999998774
No 80
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.37 E-value=0.0075 Score=62.03 Aligned_cols=26 Identities=38% Similarity=0.704 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
|+|.+++|++||.|++||+|++|+.+
T Consensus 25 G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 25 DRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred cEEEEEEccCCCEecCCcEEEEecCc
Confidence 99999999999999999999999975
No 81
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.21 E-value=0.0038 Score=63.47 Aligned_cols=26 Identities=42% Similarity=0.657 Sum_probs=20.0
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.+|.| +|+|++||.|++||+|+++++
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 35999 999999999999999999987
No 82
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.11 E-value=0.017 Score=57.82 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=48.0
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
+|.+ +..++.||.|++||+|+.|+. .+|.||.+|+|..+. ++|- .|..|--|+.+
T Consensus 172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGli-rdG~-~V~~G~Ki~dI 226 (256)
T TIGR03309 172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI-HEGL-TVTEGLKIGDV 226 (256)
T ss_pred CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe-cCCC-CcCCCCEEEEE
Confidence 3444 459999999999999999974 799999999999876 7897 89999999987
No 83
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=95.88 E-value=0.055 Score=52.30 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=83.9
Q ss_pred CCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEeecC
Q 010942 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTE 417 (497)
Q Consensus 338 ~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV~t~ 417 (497)
...||+.+....|++.+-...++ .+++++.+++.|+.+++.++++++=++.++.+.+++.|+..+.|-.+
T Consensus 26 ~~~p~y~i~~~LDvtn~~~~vk~----------~~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~ 95 (219)
T COG4845 26 LQYPHYDINLQLDVTNFYGYVKE----------NGLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHG 95 (219)
T ss_pred cccceEeeeeeeehhHHHHHHHH----------cCCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcC
Confidence 45799999999998887554332 15899999999999999999999999999999999999999999985
Q ss_pred C-CeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCC
Q 010942 418 N-GLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNS 451 (497)
Q Consensus 418 ~-GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~ 451 (497)
+ +++.-+--. =+.+..++++-...=+++.++|.
T Consensus 96 ~~e~Fs~l~~e-~~~~~~dF~q~y~~~ie~~~~~~ 129 (219)
T COG4845 96 ETETFSVLWTE-YQEDYEDFAQLYIEDIEQYGANN 129 (219)
T ss_pred CCcEEEEEecc-ccccHHHHHHHHHHHHHHhccCc
Confidence 5 555433333 66788899888888788887764
No 84
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.40 E-value=0.049 Score=57.47 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=29.4
Q ss_pred EEecCcceEEEEEee-CCCCeeecCCCEEEEEeccC
Q 010942 163 EMECMEEGYLAKIVK-GDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 163 ev~ap~~G~l~~i~~-~~G~~~v~vG~~l~~i~~~~ 197 (497)
.|.||++|+|..+.+ ..|+ .|..|++|+.+.+..
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~-~v~~g~~l~~i~~~~ 307 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGG-VVQPGETLMEIVPED 307 (423)
T ss_pred EEECCCCcEEEEEEEEccCc-eecCCCeeEEEecCC
Confidence 499999999999876 6997 999999999987543
No 85
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=95.31 E-value=0.035 Score=44.55 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=29.7
Q ss_pred EEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 163 ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
.|.||.+|+|.++++++|+ .|+.|++|+.+...
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd-~V~~g~~l~~ve~~ 36 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGD-QIGKGDTLVLLESM 36 (71)
T ss_pred EEeCCCCEEEEEEEeCCCC-EECCCCEEEEEEec
Confidence 5899999999999999998 99999999987443
No 86
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.29 E-value=0.028 Score=48.75 Aligned_cols=46 Identities=28% Similarity=0.337 Sum_probs=39.2
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeC
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~ 178 (497)
-|.-.+-.|++||.|++||.|++.+ +-....|.|+.+|+|.+|.-.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEeee
Confidence 4555678899999999999999997 466889999999999998643
No 87
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.00 E-value=0.032 Score=44.57 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=24.9
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVE 156 (497)
.+|+|.+|++++||.|..||+|++||
T Consensus 45 ~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEecCCCEECCCCEEEEEC
Confidence 67999999999999999999999987
No 88
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.00 E-value=0.081 Score=54.34 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=47.9
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe---CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET---DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt---dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
+=+.+..++.||.|++||+|++|=. +....+|.||.+|+|.-+. ..- .|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p-~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYP-LVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCC-eecCCceEEEe
Confidence 4467788999999999999999954 4567889999999997665 443 79999999876
No 89
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.72 E-value=0.11 Score=53.10 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=45.8
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe--CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt--dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
+=+.++.++.||.|++||+|++|-. .....+|.||.+|+|.-+. ..- .|..|+.|+.+
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~-~v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLP-LVNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCC-ccCCCCEEEEe
Confidence 3456789999999999999999954 2334789999999997665 332 68999999865
No 90
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=94.67 E-value=0.095 Score=55.31 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=47.1
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEe----CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEt----dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.+=+.++.++.||.|++||+|++|-. +....+|.||.+|+|.-+. ..- .|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~-~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRR-FVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCc-cccCCCeEEEe
Confidence 35577899999999999999999854 3445557999999997665 443 79999999865
No 91
>PRK06748 hypothetical protein; Validated
Probab=94.20 E-value=0.075 Score=44.53 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=27.3
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
...|+|.++++++||.|..|++|+.|+.|-
T Consensus 48 p~~G~v~~i~v~~Gd~V~vG~~la~I~~~~ 77 (83)
T PRK06748 48 GISGYIESLEVVEGQAIADQKLLITVRDDL 77 (83)
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEEECCe
Confidence 357999999999999999999999999764
No 92
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.06 E-value=0.2 Score=51.89 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=47.0
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe----CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt----dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|.-+. ..- .|..|+.|+.+.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~-~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPG-LVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCC-ccCCCCEEEEEe
Confidence 4577889999999999999999854 2456789999999997654 332 588899988764
No 93
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=93.89 E-value=0.17 Score=52.68 Aligned_cols=58 Identities=31% Similarity=0.412 Sum_probs=46.6
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe----CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt----dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
+=+....++.||.|++||+|++|=. .....+|.||.+|+|.-+. ..- .|..|+.|+.+
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~-~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPG-LIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCC-ccCCCCEEEEe
Confidence 3456788999999999999999953 2346789999999998765 333 79999999875
No 94
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.52 E-value=0.21 Score=51.92 Aligned_cols=62 Identities=19% Similarity=0.372 Sum_probs=50.9
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEe---CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVET---DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEt---dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.++=+++.+|+.||.|++||+|+.|=. -+...||.|+.+|+|..+... + .|+.|+.+..+..
T Consensus 262 p~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~-~--~v~~Gdl~~~v~~ 326 (331)
T COG3608 262 PAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL-R--LVQPGDLLKVVGR 326 (331)
T ss_pred CCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec-c--ccCCCCeeeeecc
Confidence 456789999999999999999998865 488999999999999887633 3 4788877776643
No 95
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=93.50 E-value=0.11 Score=47.51 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=32.0
Q ss_pred eeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 160 a~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
....|.||..|++.++++++|| .|+.||+|+++...
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd-~V~~Gq~l~IiEAM 104 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGD-TVKAGQTLAIIEAM 104 (140)
T ss_pred cCceEecCcceEEEEEeeccCC-EEcCCCEEEEEEee
Confidence 3567999999999999999998 99999999998653
No 96
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=93.49 E-value=0.68 Score=48.45 Aligned_cols=68 Identities=28% Similarity=0.429 Sum_probs=44.2
Q ss_pred CCCccccccccccc-ccccccccccccCCCCC----CceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 86 GSPIAGSFLNRGFA-CSKVHLKRGFSSDSGLP----PHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~~~~~r~f~~~~~~~----~~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
-.|++..+..+.+. |.+...-| +..++.+. .++.|.+|.- ..|+|.+++|++||+|+.|+.|+.|++.
T Consensus 77 vP~faESiteG~l~~~lK~~Gd~-v~~DE~va~IETDK~tv~V~sP----~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 77 VPPFAESITEGDLAQWLKKVGDR-VNEDEAVAEIETDKTTVEVPSP----ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred cCCcccccccchHHHHhhCcccc-cccchhheeeeccceeeeccCC----CcceeeEEecCCCCcccCCceeEEecCC
Confidence 45666666666665 44443322 22232222 2344555543 4699999999999999999999999875
No 97
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=93.13 E-value=0.16 Score=39.10 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=28.0
Q ss_pred EecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 164 v~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
|.||.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 2 v~a~~~G~v~~~~v~~G~-~v~~g~~l~~i~ 31 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGD-KVEAGQPLAVLE 31 (67)
T ss_pred ccCCccEEEEEEEeCCCC-EECCCCEEEEEE
Confidence 689999999999999998 999999999874
No 98
>PF13437 HlyD_3: HlyD family secretion protein
Probab=92.96 E-value=0.15 Score=43.32 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=20.1
Q ss_pred EecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 164 v~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
|.||++|+|..+.++.|+ .|..|++|+.+.+.
T Consensus 2 i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGE-VVSAGQPLAEIVDT 33 (105)
T ss_pred EECCCCEEEEEEeCCCCC-EECCCCEEEEEEcc
Confidence 556666666666666665 66666666665543
No 99
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=92.44 E-value=0.14 Score=51.50 Aligned_cols=48 Identities=35% Similarity=0.549 Sum_probs=37.8
Q ss_pred cCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCee--eEEecCcceEEEEEee
Q 010942 123 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKAT--VEMECMEEGYLAKIVK 177 (497)
Q Consensus 123 mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~--~ev~ap~~G~l~~i~~ 177 (497)
+|+--.+|. -+.+|+|||.|+.||+|++ ||-. +-+.||.+|+|.+|..
T Consensus 32 ~~~Df~g~~----Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 32 LPDDFPGMK----PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred cCcccCCCC----ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 455444444 5889999999999999994 6654 4478999999999975
No 100
>PRK07051 hypothetical protein; Validated
Probab=92.20 E-value=0.2 Score=41.31 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=25.1
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEE
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVE 156 (497)
..+|+|.+|++++||.|+.||+|++++
T Consensus 53 ~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 53 EAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 457999999999999999999999986
No 101
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.02 E-value=0.35 Score=49.30 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=40.8
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEe--CCeeeEEecCcceEEEEEeeCCCCeeecCCCEE
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEt--dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l 190 (497)
.+=+.+.+++.||.|++||+|++|=. .....+|.||.+|+|.-+.. .- .|..|+.|
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~--~~-~v~~G~~l 287 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA--TL-PVRKGDPL 287 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC--CC-ccCCCCcc
Confidence 34577888999999999999998832 24456799999999976643 22 46666654
No 102
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=90.84 E-value=0.44 Score=43.26 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=30.9
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
...|.||.+|+|.++++.+|+ .|..|++|+.+..
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd-~V~~Gq~L~~lEa 94 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGD-QVTENQPLLILEA 94 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCC-EECCCCEEEEEec
Confidence 566999999999999999998 9999999998844
No 103
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=90.82 E-value=0.43 Score=44.34 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=35.8
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeE-EecCcceEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIV 176 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~e-v~ap~~G~l~~i~ 176 (497)
.||..+-..+.+||.|.+||.|+-|.|-|-.+- +.||++|+|.=+.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 578888899999999999999999999998876 9999999997665
No 104
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=90.48 E-value=0.27 Score=53.45 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=37.7
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEee
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 177 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~ 177 (497)
.|.--+..|++||+|..||+|++-.. -..+-+.||.+|+|.+|..
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEec
Confidence 35556789999999999999997653 2678899999999999953
No 105
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=90.20 E-value=0.39 Score=49.38 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=30.9
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
.+.|.|+.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~-~V~kGq~L~~ld 74 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTD-YVKQGDVLVRLD 74 (334)
T ss_pred eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEEC
Confidence 678999999999999999998 999999999984
No 106
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=89.93 E-value=0.55 Score=48.87 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=33.9
Q ss_pred EEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 153 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 153 ~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
+.||++ .+.|.++.+|+|.++++++|+ .|+.|++|+.|.
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~-~VkkGq~L~~ld 80 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQ-AVKKGDLLFRID 80 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEEC
Confidence 345554 688999999999999999998 999999999984
No 107
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=89.77 E-value=0.31 Score=48.94 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=23.5
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..|.++.+|+|.+|++++|+ .|+.|++|+.|.+
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~-~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQ-RVKKGQVLARLDP 34 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTE-EE-TTSECEEE--
T ss_pred EEEeCCCCeEEEEEEccCcC-EEeCCCEEEEEEe
Confidence 57899999999999999997 9999999999854
No 108
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=89.49 E-value=0.6 Score=37.80 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=27.7
Q ss_pred EEecCcceEEEE------EeeCCCCeeecCCCEEEEEeccC
Q 010942 163 EMECMEEGYLAK------IVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 163 ev~ap~~G~l~~------i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
+|.+|.-|.+.+ +++++|+ .|..|++|+.+..+.
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~-~V~~G~~l~~iet~K 41 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGD-KVKKGDPLAEIETMK 41 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTE-EESTTSEEEEEESSS
T ss_pred EEECCCCccEEEecceeEEEECCCC-EEEcCceEEEEEcCc
Confidence 577787777655 9999997 999999999985443
No 109
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=89.35 E-value=0.63 Score=43.39 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=30.0
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..|.||..|+|.++++++|| .|..||+|+.+..
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd-~V~~Gq~l~~iEa 117 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQ-QVKVGQGLLILEA 117 (153)
T ss_pred CEEECCCCeEEEEEEeCCCC-EEcCCCEEEEEee
Confidence 46899999999999999998 9999999998743
No 110
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=88.91 E-value=0.64 Score=47.77 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=35.4
Q ss_pred EEEEeCCeeeEEecCcc---eEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 153 CEVETDKATVEMECMEE---GYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 153 ~eVEtdKa~~ev~ap~~---G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+.|+...-.+.|.++.+ |+|.+|++++|+ .|+.|++|+.|..
T Consensus 5 G~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~-~V~~G~~L~~ld~ 49 (327)
T TIGR02971 5 GRLEPEGEVVAVAAPSSGGTDRIKKLLVAEGD-RVQAGQVLAELDS 49 (327)
T ss_pred ceEeecCceEEecCCCCCCCcEEEEEEccCCC-EecCCcEEEEecC
Confidence 34555555678999999 999999999998 9999999999843
No 111
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=88.87 E-value=0.38 Score=52.27 Aligned_cols=44 Identities=30% Similarity=0.356 Sum_probs=36.8
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEe
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~ 176 (497)
.|.--+..|++||+|..||.|++-... ....+.||.+|+|+.|.
T Consensus 38 ~G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 38 VGLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 355567899999999999999965433 56889999999999994
No 112
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=88.62 E-value=0.32 Score=48.85 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=21.5
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
..|.|.+++|++||.|++||+|++++....
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~ 37 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPTDY 37 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--HHH
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEeecc
Confidence 469999999999999999999999986433
No 113
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=87.68 E-value=1.1 Score=54.17 Aligned_cols=62 Identities=10% Similarity=0.170 Sum_probs=47.7
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
|...+..++.++.+..++.....+.. -..+|.||..|.|.++++++|+ .|+.|++|+++..+
T Consensus 1047 Gq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd-~V~~Gd~L~~iEam 1108 (1143)
T TIGR01235 1047 GQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQ-AVNKGDPLVVLEAM 1108 (1143)
T ss_pred CeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCC-EeCCCCEEEEEEec
Confidence 35666678888877777665544322 2346999999999999999998 89999999988543
No 114
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=87.43 E-value=0.59 Score=50.57 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.6
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEe
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~ 176 (497)
|.-.+..|++||+|+.||.|++-+ ......+.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 444568899999999999999883 4468899999999999985
No 115
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=87.42 E-value=0.99 Score=45.63 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=33.1
Q ss_pred EEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 154 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 154 eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
.|+..+ +..|.+|.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 20 ~v~~~~-~~~v~a~~~G~V~~i~v~~G~-~V~kG~~L~~l~ 58 (322)
T TIGR01730 20 SLEAVD-EADLAAEVAGKITKISVREGQ-KVKKGQVLARLD 58 (322)
T ss_pred EEEEee-EEEEEccccEEEEEEEcCCCC-EEcCCCEEEEEC
Confidence 444443 567999999999999999998 999999999884
No 116
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=87.20 E-value=0.54 Score=38.56 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=22.0
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
++-+.=+.++++.||.|++||+||+|=++.
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 445566789999999999999999987643
No 117
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=87.04 E-value=1.1 Score=48.03 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=44.7
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 136 ARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.-..++.|+.-..-+....|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.|..
T Consensus 63 ~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~-~VkkGq~La~ld~ 120 (415)
T PRK11556 63 QAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQ-QVKAGDLLAEIDP 120 (415)
T ss_pred EEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCC-EecCCCEEEEECc
Confidence 33444555544444566788864 5678999999999999999998 9999999999843
No 118
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=86.75 E-value=1.3 Score=46.85 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=44.1
Q ss_pred EcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 139 ~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
.++.|+....-+..+.|+... .++|.++.+|+|.++.+++|+ .|+.|++|+.|.
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~-~VkkGqvLa~ld 93 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGD-KVNQGDSLYQID 93 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcC-EecCCCEEEEEC
Confidence 445555555556677888664 678999999999999999998 999999999984
No 119
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=86.75 E-value=1.4 Score=46.26 Aligned_cols=57 Identities=12% Similarity=0.224 Sum_probs=41.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 135 IARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 135 I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
+.-+.++.|+....=..-+.|+... .+.|.++.+|+|.++++++|+ .|+.|++|+.+
T Consensus 36 v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~-~V~kG~~L~~l 92 (370)
T PRK11578 36 YQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVI 92 (370)
T ss_pred eEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCC-EEcCCCEEEEE
Confidence 3344455555333223445666553 558999999999999999998 99999999988
No 120
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.73 E-value=1.1 Score=48.52 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=33.6
Q ss_pred EEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 155 VETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 155 VEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
|..+.-...|.++..|+|.+|+|++|+ .|+.|++|+.+.+
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~-~V~~G~~L~~ld~ 92 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENK-FVKKGDLLVVYDN 92 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCC-EecCCCEEEEECc
Confidence 444444667899999999999999998 9999999999843
No 121
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=86.71 E-value=2 Score=44.02 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe--CCeeeEEecCcceEEEEE
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKI 175 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt--dKa~~ev~ap~~G~l~~i 175 (497)
=+.+..++.||.|++||.|++|-. .....++.||.+|+|.-+
T Consensus 240 Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 240 GLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 345566677777777777776633 112345667777776544
No 122
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.25 E-value=1.2 Score=46.96 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=36.3
Q ss_pred EEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 153 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 153 ~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+.|..+.....|.++.+|+|.+++|++|+ .|+.|++|+.+..
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~-~V~kG~~L~~ld~ 76 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGD-RVKAGQVLVELDA 76 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCC-EecCCCeEEEEcc
Confidence 35667777778999999999999999998 8999999998843
No 123
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=86.02 E-value=0.78 Score=46.51 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=27.3
Q ss_pred EEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 152 LCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 152 l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
-+.|+. -+..|.++.+|.| ++++++|+ .|+.|++|+.+..
T Consensus 14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~-~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGD-KVKKGQVLAELDS 53 (328)
T ss_dssp EEEEEE--SEEEE--SS-EEE-EE-S-TTS-EEETT-EEEEEE-
T ss_pred EEEEEE--EEEEEECCCCEEE-EEEeCCcC-EECCCCEEEEEEC
Confidence 345554 4567899999999 99999998 8999999999854
No 124
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=85.61 E-value=0.52 Score=44.05 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=36.4
Q ss_pred CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCC
Q 010942 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (497)
Q Consensus 141 ~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G 180 (497)
++|-.|.+||.++.||+=|+.-||.+|.+|.|.+|..+-.
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~ 128 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLE 128 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccc
Confidence 7899999999999999999999999999999998864433
No 125
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=84.95 E-value=1.8 Score=45.68 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=42.6
Q ss_pred EcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 139 ~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
.++.++.-..-...+.|+.+. .++|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd-~VkkGq~La~ld 95 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAYR-QAEVRARVAGIVTARTYEEGQ-EVKQGAVLFRID 95 (385)
T ss_pred EEEEecccceEEEEEEEEEee-EEEEeccCcEEEEEEECCCCC-EEcCCCEEEEEC
Confidence 444555444445567788654 679999999999999999998 999999999983
No 126
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=84.90 E-value=1.4 Score=47.16 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=31.6
Q ss_pred CeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 159 Ka~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.-...|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 56 ~~~~~v~a~~~G~V~~i~V~eG~-~V~kGq~L~~l~~ 91 (421)
T TIGR03794 56 SGVDTIQSPGSGVVIDLDVEVGD-QVKKGQVVARLFQ 91 (421)
T ss_pred CceeEEECCCCeEEEEEECCCcC-EECCCCEEEEECc
Confidence 33458999999999999999998 9999999999844
No 127
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=84.72 E-value=0.96 Score=42.23 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCceeEEEEEEcCCCCeecCCCeEEEEE
Q 010942 129 TMQEGNIARWLKKEGDKVSPGEVLCEVE 156 (497)
Q Consensus 129 ~~~eg~I~~w~v~~Gd~V~~gd~l~eVE 156 (497)
.-.+|+|.+|+++.||.|..||+|++|+
T Consensus 129 A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 129 AEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred cCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 3467999999999999999999999985
No 128
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=84.70 E-value=1.4 Score=43.54 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=31.4
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
.+.|.||++|+|..+.+..|+ .|..|++|+.+.+..
T Consensus 88 ~~~i~AP~dG~V~~~~~~~G~-~v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 88 YVEVRSPFDGYITQKSVTLGD-YVAPQAELFRVADLG 123 (265)
T ss_pred eEEEECCCCeEEEEEEcCCCC-EeCCCCceEEEEcCC
Confidence 346899999999999999997 999999999886543
No 129
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=84.39 E-value=1.4 Score=45.58 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=30.9
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
.+.|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd-~V~kG~~L~~ld 75 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGD-AVKAGQVLGELD 75 (331)
T ss_pred EEEeecccCcEEEEEEcCCCC-EEcCCCEEEEEC
Confidence 668999999999999999998 899999999984
No 130
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=84.30 E-value=1.2 Score=45.84 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=30.2
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+.|.++.+|.|.++++++|+ .|+.|++|+.+..
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd-~VkkGqvLa~Ld~ 80 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQ-LVKKGQVLFTIDQ 80 (310)
T ss_pred EEEccCCceEEEEEEeCCcC-EEcCCCEEEEECc
Confidence 56999999999999999998 9999999999843
No 131
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=84.13 E-value=1.2 Score=47.31 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=31.4
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.+.|.++.+|+|.++.+++|+ .|+.|++|+.|..
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd-~VkkGqvL~~LD~ 94 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTD-FVKEGDVLVTLDP 94 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCC-EECCCCEEEEECc
Confidence 788999999999999999998 9999999999843
No 132
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=84.12 E-value=1.1 Score=41.72 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.9
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEE
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVE 156 (497)
-.+|+|++|+++.||.|..||+|++|+
T Consensus 129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 129 DKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 467999999999999999999999985
No 133
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=83.39 E-value=1.3 Score=46.47 Aligned_cols=40 Identities=35% Similarity=0.506 Sum_probs=32.9
Q ss_pred EEEcCCCCeecCCCeEEEEEeCC--eeeEEecCcceEEEEEeeCC
Q 010942 137 RWLKKEGDKVSPGEVLCEVETDK--ATVEMECMEEGYLAKIVKGD 179 (497)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~eVEtdK--a~~ev~ap~~G~l~~i~~~~ 179 (497)
..+|++||.|++||+|+| || --+-++||.+|+|..|...+
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence 457899999999999996 55 34668999999999997433
No 134
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=83.34 E-value=1.2 Score=48.48 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=26.4
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
..+|+|.+|++++||.|..|++|+.||.+
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 45799999999999999999999999854
No 135
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=83.26 E-value=3.5 Score=41.60 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=45.9
Q ss_pred eEEEEEEcCCCCeecCCCeE--EEEEe--CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 133 GNIARWLKKEGDKVSPGEVL--CEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l--~eVEt--dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
+=+..+.++.||.|++||+| .++-. +-...++.+|.+|+|.- ....- .|..|+.|+.+.
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~--~~~~~-~v~~G~~l~~v~ 290 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIF--IRESP-YVEQGDALAKVA 290 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEES--ECTSS-ECTTTEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEE--eCccc-ccCCCCeEEEEe
Confidence 45669999999999999999 65432 23456899999999954 45665 799999998763
No 136
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=82.61 E-value=1.1 Score=49.19 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=35.8
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEe
Q 010942 136 ARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (497)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~ 176 (497)
....|++||+|.+||+|.+=|. ...-+.||.+|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 5678999999999999998775 88999999999999998
No 137
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=82.33 E-value=1.1 Score=51.31 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=35.7
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEe
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~ 176 (497)
|.-.+..|++||+|.+||+|++-+ .-..+.|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 444568899999999999999653 3357899999999999885
No 138
>PF13437 HlyD_3: HlyD family secretion protein
Probab=82.19 E-value=2.7 Score=35.57 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=25.5
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
..|.|..|.+++|+.|..|++|++|...
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 4699999999999999999999999853
No 139
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=81.89 E-value=1.5 Score=44.37 Aligned_cols=26 Identities=35% Similarity=0.472 Sum_probs=24.0
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVE 156 (497)
.+|+|.+|++++||.|..||+|++||
T Consensus 248 ~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 248 QSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEec
Confidence 36899999999999999999999986
No 140
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=81.52 E-value=1.4 Score=47.23 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=27.1
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
..|.|.+.+|++||.|++||+|+.+++...
T Consensus 65 ~~G~V~~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 65 GSGVVIDLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred CCeEEEEEECCCcCEECCCCEEEEECcHHH
Confidence 569999999999999999999999987644
No 141
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=80.79 E-value=1.4 Score=36.91 Aligned_cols=25 Identities=48% Similarity=0.962 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
+.-++|++++||.|++||+|++++.
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEe
Confidence 3446799999999999999999985
No 142
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=79.27 E-value=2.4 Score=45.11 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=36.2
Q ss_pred CeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 150 EVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 150 d~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
.....|+. .-.++|.+..+|+|.++.+++|+ .|+.||+|+.|.
T Consensus 55 ~~~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd-~VkkGqvLa~ld 97 (397)
T PRK15030 55 ELPGRTSA-YRIAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQID 97 (397)
T ss_pred EEEEEEEE-EEEEEEEecCcEEEEEEEcCCCC-EecCCCEEEEEC
Confidence 34456665 44778999999999999999998 999999999984
No 143
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=78.29 E-value=2.9 Score=47.11 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.7
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
-+|.||..|.|.++++++|| .|+.|++|+++..+
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd-~V~~Gq~L~~iEam 559 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGD-EVKAGQAVLVIEAM 559 (596)
T ss_pred CeEecCcceEEEEEEeCCCC-EeCCCCEEEEEEec
Confidence 36999999999999999998 99999999988543
No 144
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=77.91 E-value=2 Score=46.57 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.7
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCCeee
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKATV 162 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ 162 (497)
...|.|.+++|++||.|++||+|+.++......
T Consensus 65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~~~ 97 (457)
T TIGR01000 65 TSNNAIKENYLKENKFVKKGDLLVVYDNGNEEN 97 (457)
T ss_pred CCCcEEEEEEcCCCCEecCCCEEEEECchHHHH
Confidence 345999999999999999999999997654443
No 145
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=77.76 E-value=5.5 Score=37.79 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.9
Q ss_pred EeeCCCCeeecCCCEEEEE
Q 010942 175 IVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 175 i~~~~G~~~v~vG~~l~~i 193 (497)
.++++|+ .|+.||+|+.+
T Consensus 106 ~~Vk~Gd-~Vk~G~~L~~~ 123 (169)
T PRK09439 106 RIAEEGQ-RVKVGDPIIEF 123 (169)
T ss_pred EEecCCC-EEeCCCEEEEE
Confidence 4789997 89999999987
No 146
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=77.66 E-value=6.3 Score=39.58 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=36.4
Q ss_pred CCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 148 PGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 148 ~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.-.....++. ....++.++..|.|.++++++|+ .|+.|++|+.+.+
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~-~Vk~Gq~L~~ld~ 99 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGD-RVKKGQLLARLDP 99 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCC-eecCCCEEEEECC
Confidence 3344455555 44457888899999999999998 9999999998854
No 147
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=77.59 E-value=5.1 Score=42.99 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=40.2
Q ss_pred CCCCeecCCCeEEEEEeCC-eeeEEecCcceEEEEEe-eCCCCeeecCCCEEEEEe
Q 010942 141 KEGDKVSPGEVLCEVETDK-ATVEMECMEEGYLAKIV-KGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 141 ~~Gd~V~~gd~l~eVEtdK-a~~ev~ap~~G~l~~i~-~~~G~~~v~vG~~l~~i~ 194 (497)
+.++.-..-+..+.|+.|. ....|.++.+|+|.+++ +.+|+ .|+.||+|+.+.
T Consensus 102 ~~~~~~~~~~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd-~VkkGq~La~l~ 156 (409)
T PRK09783 102 TRGPLTFAQTFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLT 156 (409)
T ss_pred EEeeccceEEEeEEEEECCCceEEEeCCcCEEEEEEEecCCCC-EECCCCEEEEEe
Confidence 3344333334456777543 46689999999999998 89998 999999999984
No 148
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=77.45 E-value=17 Score=39.24 Aligned_cols=40 Identities=28% Similarity=0.343 Sum_probs=29.4
Q ss_pred EEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhC
Q 010942 344 YLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKV 390 (497)
Q Consensus 344 tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~ 390 (497)
+....++-+.+.++++.-++ .++|++.+|.-+++.||.+.
T Consensus 251 ~~~~~i~~~~~~~ll~~CR~-------~~~TlT~~L~al~~~al~~~ 290 (480)
T PF07247_consen 251 YRSLSISPEELKKLLKACRK-------HGTTLTALLHALIALALSKV 290 (480)
T ss_pred EEEEEECHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHhh
Confidence 34556666677776666553 25899999999999999973
No 149
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=75.20 E-value=3.6 Score=42.12 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=26.5
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
.+|+|.++++++||.|..|++|+.|+.+.
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 46999999999999999999999998754
No 150
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=75.01 E-value=8.1 Score=34.81 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=17.1
Q ss_pred EEEEeeCCCCeeecCCCEEEEE
Q 010942 172 LAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 172 l~~i~~~~G~~~v~vG~~l~~i 193 (497)
=-+.++++|+ .|..|++|+.+
T Consensus 81 gF~~~vk~Gd-~V~~G~~l~~~ 101 (124)
T cd00210 81 GFTSHVEEGQ-RVKQGDKLLEF 101 (124)
T ss_pred ceEEEecCCC-EEcCCCEEEEE
Confidence 3345789997 89999999887
No 151
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.84 E-value=6.3 Score=36.00 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=40.5
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeE-EecCcceEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIV 176 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~e-v~ap~~G~l~~i~ 176 (497)
.||-++-.-+.+|+.|.+||+++-|.|-|-.+- +++|.+|++.=+.
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 478899999999999999999999999998877 8899999987553
No 152
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=74.78 E-value=4.2 Score=45.80 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=31.3
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
..|.||..|.|.++++++|| .|+.|++|+++..+.
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd-~V~~G~~l~~iEamK 552 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQ-TVAEGEVLLILEAMK 552 (582)
T ss_pred CeEeCCccEEEEEEEeCCCC-EECCCCEEEEEEecc
Confidence 47999999999999999998 999999999885443
No 153
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=74.67 E-value=3.4 Score=43.60 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=31.1
Q ss_pred EEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 163 ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
+|.||.+|+|.+..++.|+ -|.+|++|+.+++.+
T Consensus 210 ~IrAP~dG~V~~~~v~~G~-~V~~G~~l~alVp~~ 243 (352)
T COG1566 210 VIRAPVDGYVTNLSVRVGQ-YVSAGTPLMALVPLD 243 (352)
T ss_pred EEECCCCceEEeecccCCC-eecCCCceEEEeccc
Confidence 4999999999999999998 999999999887744
No 154
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=74.28 E-value=2.9 Score=42.02 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=25.8
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 579999999999999999999999997
No 155
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=73.82 E-value=6.7 Score=35.70 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.2
Q ss_pred eeCCCCeeecCCCEEEEE
Q 010942 176 VKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 176 ~~~~G~~~v~vG~~l~~i 193 (497)
++++|+ .|+.||+|+.+
T Consensus 89 ~v~~G~-~V~~G~~L~~~ 105 (132)
T PF00358_consen 89 LVKEGD-KVKAGQPLIEF 105 (132)
T ss_dssp SS-TTS-EE-TTEEEEEE
T ss_pred EEeCCC-EEECCCEEEEE
Confidence 788997 89999999887
No 156
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=73.63 E-value=3.7 Score=44.34 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=26.9
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
..+|+|.++++++||.|..|++|++|+++.
T Consensus 93 p~~G~v~~i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 93 PASGVITKIFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEEcCCC
Confidence 457999999999999999999999998643
No 157
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=73.46 E-value=7.8 Score=37.20 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=41.4
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEE
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIA 191 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~ 191 (497)
+.|..| +++|+.|++||.+.-++-- .++++--|.+ .++.+++|+ .|..|+.|.
T Consensus 130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~-~V~~G~tli 182 (189)
T TIGR00164 130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGE-KVTAGETVL 182 (189)
T ss_pred cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCC-EEEeceEEE
Confidence 455444 4899999999999999965 6666666665 378899998 899999763
No 158
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=72.82 E-value=9.5 Score=34.24 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.1
Q ss_pred EEEeeCCCCeeecCCCEEEEE
Q 010942 173 AKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 173 ~~i~~~~G~~~v~vG~~l~~i 193 (497)
-+.++++|+ .|+.|++|+.+
T Consensus 82 F~~~v~~Gd-~V~~G~~l~~~ 101 (121)
T TIGR00830 82 FTSHVEEGQ-RVKKGDPLLEF 101 (121)
T ss_pred eEEEecCCC-EEcCCCEEEEE
Confidence 456789998 89999999987
No 159
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=72.71 E-value=4.4 Score=32.07 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=23.0
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEV 155 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eV 155 (497)
.+|+|++|+++.|+.|..|+.|+.|
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 5799999999999999999999874
No 160
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=72.40 E-value=4.5 Score=43.55 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=27.6
Q ss_pred CCceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 129 ~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
...+|+|.++++++||.|..|++|++||++.
T Consensus 50 a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 50 APAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 3467999999999999999999999998654
No 161
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=71.93 E-value=4.7 Score=43.36 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=27.2
Q ss_pred CCceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 129 ~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
...+|+|.+|++++||.|..|++|+.|+.+
T Consensus 48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 48 SPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 346799999999999999999999999865
No 162
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=71.57 E-value=8.6 Score=36.03 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=18.6
Q ss_pred eEEEEEeeCCCCeeecCCCEEEEE
Q 010942 170 GYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 170 G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
|.--+.++++|+ .|++||+|..+
T Consensus 86 GegF~~~v~~Gd-~Vk~Gd~Li~f 108 (156)
T COG2190 86 GEGFESLVKEGD-KVKAGDPLLEF 108 (156)
T ss_pred CcceEEEeeCCC-EEccCCEEEEE
Confidence 444455899998 89999999987
No 163
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=71.41 E-value=7.4 Score=36.94 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.9
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
+|+--+++|++||+|++||+|+++.-+..
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~i 128 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPLL 128 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHHH
Confidence 36778999999999999999999976543
No 164
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=71.41 E-value=3.7 Score=37.00 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.6
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
+|+--++++++||+|++||+|+++.-+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 467789999999999999999998654
No 165
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=71.31 E-value=5.5 Score=44.94 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=30.7
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..+|.||..|.|.++++++|+ .|+.|++|+.+..
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd-~V~~Gd~l~~iEa 557 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQ-TVAEGDVLLILEA 557 (593)
T ss_pred CceEECCccEEEEEEEeCCCC-EeCCCCEEEEEec
Confidence 457999999999999999998 9999999998743
No 166
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=71.29 E-value=4.8 Score=30.24 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEE
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEV 155 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eV 155 (497)
.|++.++++++|+.|..|++|++|
T Consensus 51 ~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 51 AGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CEEEEEEeeCCcCEeCCCCEEEEC
Confidence 577999999999999999999875
No 167
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=70.28 E-value=4 Score=36.64 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=23.8
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
+|+--+++|++||+|++||+|+++.-+.
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4667899999999999999999987543
No 168
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=70.17 E-value=5.3 Score=42.94 Aligned_cols=39 Identities=31% Similarity=0.566 Sum_probs=31.4
Q ss_pred ceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
+..+.+|. ..+|+|.++++++||.|..|++|+.|++.-.
T Consensus 43 Ka~~EV~a----p~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 43 KATMEVPA----PDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred ceeEEecC----CCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 33444554 3569999999999999999999999998643
No 169
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=70.01 E-value=15 Score=34.41 Aligned_cols=29 Identities=41% Similarity=0.495 Sum_probs=25.0
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
+|+--+-+|++||+|++||+|+++.-|..
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 37788999999999999999999977543
No 170
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=68.96 E-value=6.1 Score=42.67 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=27.5
Q ss_pred CCceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 129 ~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
...+|+|.+|++++||.|..|++|++|+++.
T Consensus 46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 46 SRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 3467999999999999999999999998654
No 171
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=68.76 E-value=11 Score=36.74 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=42.5
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEE-EE
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI-AI 192 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l-~~ 192 (497)
.+.|+.| +++|+.|++||.+.-++-- .++++--|.+ .++.+++|+ .|..|+.+ ++
T Consensus 149 ~r~I~~~-~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~-kV~~Getvi~~ 204 (206)
T PRK05305 149 ARRIVCY-VKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQ-KVVAGETVLAR 204 (206)
T ss_pred ccEEEEe-CCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCC-EEEcccEEEEE
Confidence 3456554 6899999999999999966 5666666655 378899998 89999854 44
No 172
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=68.48 E-value=6.3 Score=43.86 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=30.4
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
-.+.||..|+|+.+.|++|+ .|..|++|+++...
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~-~V~~G~~lvvlEAM 609 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQ-EVSAGDLLVVLEAM 609 (645)
T ss_pred CceecCCCceEEEEEecCCC-EecCCCeEEEeEeh
Confidence 34899999999999999997 99999999988553
No 173
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=68.01 E-value=7.3 Score=43.98 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=30.8
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
...|.||.+|+|.++.+++|+ .|+.|++|+.+..
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd-~V~~Gq~L~~iea 555 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGD-KVKAGDTVLVLEA 555 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCC-EECCCCEEEEEec
Confidence 367999999999999999998 9999999998843
No 174
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=67.86 E-value=9.5 Score=36.81 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=47.8
Q ss_pred EecCCCCCCCceeEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEE
Q 010942 121 IGMPSLSPTMQEGNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (497)
Q Consensus 121 i~mP~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~ 192 (497)
+.|=.+|. +.-|.|+-|.. ++|+.|++||.+.-++= -.++.+--|.+ .+.++.++.|+ .|..|+.|++
T Consensus 134 v~~v~Vga-~~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~-~~~~~~v~~g~-~V~~Ge~i~~ 202 (202)
T PF02666_consen 134 VAVVQVGA-LLVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKD-KIFEWSVKPGQ-KVRAGETIGY 202 (202)
T ss_pred EEEEEecc-ceeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCC-CccccccCCCC-EEEeeeEEeC
Confidence 44444453 34456666664 69999999999999986 55555444433 33378899997 8999999873
No 175
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=64.71 E-value=4.3 Score=36.92 Aligned_cols=28 Identities=43% Similarity=0.552 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
.|+--+|+|++||+|+.||+|+++.-++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 4677899999999999999999987644
No 176
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=64.69 E-value=8.3 Score=40.77 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=30.7
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
.+.|.+..+|+|.++.+.+++ .|+.|++|+.|.+.
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq-~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQ-LVKKGDVLFRIDPR 87 (352)
T ss_pred EEEEcCcCceEEEEEEecCCC-EecCCCeEEEECcH
Confidence 455889999999999999997 89999999998543
No 177
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=64.33 E-value=8.5 Score=47.02 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=30.8
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
...|.||..|.|.++++++|| .|+.|++|+++..+
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGD-RVEAGQPLVILEAM 1166 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCC-EECCCCEEEEEEec
Confidence 345999999999999999998 99999999988443
No 178
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=62.39 E-value=9.8 Score=43.13 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=24.7
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
+|+--+.+|++||+|++||+|+++.-++.
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i 570 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKI 570 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHH
Confidence 46777999999999999999999976543
No 179
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=61.28 E-value=10 Score=41.12 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.9
Q ss_pred CceeEEEEEEcCCCCe-ecCCCeEEEEEeCC
Q 010942 130 MQEGNIARWLKKEGDK-VSPGEVLCEVETDK 159 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~-V~~gd~l~eVEtdK 159 (497)
..+|+|.+|++++||. |..|++|++||.+.
T Consensus 48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 4569999999999999 99999999998654
No 180
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=57.94 E-value=17 Score=40.11 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=36.4
Q ss_pred EEEEeCCeeeEEecCcceEEEEE------------------------eeCCCCeeecCCCEEEEEecc
Q 010942 153 CEVETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 153 ~eVEtdKa~~ev~ap~~G~l~~i------------------------~~~~G~~~v~vG~~l~~i~~~ 196 (497)
..+..-+-+.+|.|+.+|+|..| +++.|+ .|..|++|+.|..+
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd-~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGD-QVKKGDPLYTIYAE 471 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCC-EecCCCeEEEEECC
Confidence 33455688999999999999988 789998 89999999998743
No 181
>PRK12999 pyruvate carboxylase; Reviewed
Probab=57.31 E-value=13 Score=45.20 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=30.3
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.+|.||..|+|.++++++|+ .|+.||+|+.+..
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd-~V~~G~~L~~lea 1109 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGD-EVKAGDPLAVIEA 1109 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCC-EECCCCEEEEEEc
Confidence 56999999999999999998 9999999998854
No 182
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=57.10 E-value=11 Score=38.62 Aligned_cols=24 Identities=50% Similarity=0.959 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.-..|.+++||.|++||+|+++|.
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~G 87 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIEG 87 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEec
Confidence 446899999999999999999984
No 183
>PRK12784 hypothetical protein; Provisional
Probab=56.43 E-value=17 Score=30.22 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.6
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
.|.|....|.+||.|..|-.|+.+|.|-.
T Consensus 51 SG~I~~v~Ve~Gq~i~~dtlL~~~edDll 79 (84)
T PRK12784 51 SGNIRLVNVVVGQQIHTDTLLVRLEDDLL 79 (84)
T ss_pred eeeEEEEEeecCceecCCcEEEEEeeceE
Confidence 58999999999999999999999998754
No 184
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=55.23 E-value=14 Score=40.47 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=26.7
Q ss_pred CCceeEEEEEEcCCCC-eecCCCeEEEEEeCC
Q 010942 129 TMQEGNIARWLKKEGD-KVSPGEVLCEVETDK 159 (497)
Q Consensus 129 ~~~eg~I~~w~v~~Gd-~V~~gd~l~eVEtdK 159 (497)
...+|+|.+|++++|+ .|+.|++|++++.+.
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 3468999999999995 799999999998643
No 185
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=54.77 E-value=27 Score=38.82 Aligned_cols=57 Identities=30% Similarity=0.300 Sum_probs=42.0
Q ss_pred cCCCCeecCCCeEEEEE-eCCe-eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCC
Q 010942 140 KKEGDKVSPGEVLCEVE-TDKA-TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 140 v~~Gd~V~~gd~l~eVE-tdKa-~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
+++||.|..||+|..|. |.-. -+=|+.+..|.+..+.+.+|+ ..|-++|+.+..+..
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~--ytv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE--YTVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC--ceeeEEEEEEecCCC
Confidence 37999999999999774 4322 122566667777778888895 899999998855444
No 186
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=53.90 E-value=25 Score=40.09 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.8
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
+|+--+++|++||+|++||+|+++.-++
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 3566799999999999999999998744
No 187
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=53.42 E-value=1.4e+02 Score=31.76 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=47.9
Q ss_pred EeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEeecCC------
Q 010942 345 LTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTEN------ 418 (497)
Q Consensus 345 l~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV~t~~------ 418 (497)
....++++.|.++.+. ...|++++++-|++.+|.++ ++.. ++ .....+.|++.|+...
T Consensus 232 ~~~~~~~~~l~~~a~~----------~g~T~ndvllaa~~~al~~~--~~~~--~~--~~~~~i~~~~pv~~R~~~~~~~ 295 (446)
T TIGR02946 232 AAQSLPLADVKAVAKA----------FGVTINDVVLAAVAGALRRY--LEER--GE--LPDDPLVAMVPVSLRPMEDDSE 295 (446)
T ss_pred EeeccCHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHH--HHHc--CC--CCCCceEEEEeeeccccccCCC
Confidence 4455666665444221 24899999999999999886 2221 11 1223366676666321
Q ss_pred -----CeEeeeecCcCCCCHHHHHHHHHHHHHHHhcC
Q 010942 419 -----GLYVPVIRDADKKGLSTIAEEVRQLAQKAKDN 450 (497)
Q Consensus 419 -----GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g 450 (497)
|++...+. .+..+..+-..++++-..++++.
T Consensus 296 ~~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~ 331 (446)
T TIGR02946 296 GGNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKES 331 (446)
T ss_pred CCCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 23333332 22334444446665555555553
No 188
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=52.77 E-value=23 Score=35.86 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=40.3
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.|..|.. +|+.|++||.+..++-- .++.+--|. |.+ ++.++.|+ .|..|+.|+.|
T Consensus 211 ~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~-~V~~Ge~ig~~ 265 (265)
T PRK03934 211 FIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGK-SVKFGESIGEI 265 (265)
T ss_pred ceeeecc-CCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCC-EEEcchhhccC
Confidence 4445543 49999999999999874 566655444 333 57789997 89999998753
No 189
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=52.53 E-value=22 Score=46.39 Aligned_cols=20 Identities=25% Similarity=0.430 Sum_probs=17.8
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 010942 137 RWLKKEGDKVSPGEVLCEVE 156 (497)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~eVE 156 (497)
.++|++|+.|++||.||+..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc
Confidence 57899999999999999763
No 190
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=51.76 E-value=34 Score=39.20 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=40.9
Q ss_pred eeEEEEEEcCCCCeec---CCCeEEEEEeCCeeeEEecCcceEEEEE---------------------------------
Q 010942 132 EGNIARWLKKEGDKVS---PGEVLCEVETDKATVEMECMEEGYLAKI--------------------------------- 175 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~---~gd~l~eVEtdKa~~ev~ap~~G~l~~i--------------------------------- 175 (497)
+|+++...--+.+... -||.++..=+| .+|.||++|+|..+
T Consensus 506 ~G~vi~l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF 582 (648)
T PRK10255 506 TGDVVALDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGF 582 (648)
T ss_pred CcEEEEcccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCc
Confidence 4555554433333332 37777766665 58899999999877
Q ss_pred --eeCCCCeeecCCCEEEEE
Q 010942 176 --VKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 176 --~~~~G~~~v~vG~~l~~i 193 (497)
++++|| .|+.||+|+.+
T Consensus 583 ~~~Vk~Gd-~V~~G~~l~~~ 601 (648)
T PRK10255 583 KRLVEEGA-QVSAGQPILEM 601 (648)
T ss_pred eEEecCCC-EEcCCCEEEEE
Confidence 688997 89999999876
No 191
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=49.96 E-value=21 Score=38.22 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=27.6
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
..+|+|.++++++|+.|..|++|+.|+.+..
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 4579999999999999999999999986553
No 192
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=49.68 E-value=32 Score=28.60 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=33.5
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+.+|+|+.+.-.. ...-...|+...-..-+- |-|..+.++.|+ .|+.|+.|+.+..
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y----~~l~~~~v~~G~-~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITVY----GHLDSVSVKVGD-RVKAGQVIGTVGN 74 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEEE----EEESEESS-TTS-EE-TTCEEEEEBS
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEEE----eccccccceecc-cccCCCEEEecCC
Confidence 5778887776633 234444555433222222 225566789998 9999999998753
No 193
>PRK04350 thymidine phosphorylase; Provisional
Probab=48.59 E-value=29 Score=38.33 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=36.1
Q ss_pred EEEeCCeeeEEecCcceEEEEE------------------------eeCCCCeeecCCCEEEEEecc
Q 010942 154 EVETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 154 eVEtdKa~~ev~ap~~G~l~~i------------------------~~~~G~~~v~vG~~l~~i~~~ 196 (497)
.+..-+.+.+|.|+.+|+|..| +++.|+ .|..|++|+.|..+
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd-~V~~G~~l~~i~a~ 463 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGD-KVKKGDPLYTIHAE 463 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCC-EecCCCeEEEEecC
Confidence 3556788999999999999988 789998 89999999998743
No 194
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=48.39 E-value=28 Score=38.48 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=35.1
Q ss_pred EEeCCeeeEEecCcceEEEEE------------------------eeCCCCeeecCCCEEEEEecc
Q 010942 155 VETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 155 VEtdKa~~ev~ap~~G~l~~i------------------------~~~~G~~~v~vG~~l~~i~~~ 196 (497)
+-.-+.+.+|.|+.+|||..| +++.|+ .|..|++|+.+..+
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd-~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGE-KVKKGDPLYTIYAE 472 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcC-EeCCCCeEEEEECC
Confidence 445677899999999999988 789998 89999999998743
No 195
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=48.27 E-value=28 Score=37.92 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=33.6
Q ss_pred eCCeeeEEecCcceEEEEE-------------------------------eeCCCCeeecCCCEEEEEecc
Q 010942 157 TDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 157 tdKa~~ev~ap~~G~l~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~ 196 (497)
.-+-+.+|.|+.+|||..| +++.|+ .|+.|++|+.+..+
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd-~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGD-RVEKGEPLAVVHAA 404 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcC-EeCCCCeEEEEECC
Confidence 4677889999999999988 788998 89999999998743
No 196
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=47.58 E-value=22 Score=36.12 Aligned_cols=26 Identities=50% Similarity=0.906 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
++--++|++++|+.|++||+|++++-
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEE
Confidence 45567899999999999999998884
No 197
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=47.54 E-value=44 Score=35.61 Aligned_cols=54 Identities=26% Similarity=0.280 Sum_probs=39.4
Q ss_pred EcCCCCeecCCCeEEEEE-eCCeeeE--EecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 139 LKKEGDKVSPGEVLCEVE-TDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 139 ~v~~Gd~V~~gd~l~eVE-tdKa~~e--v~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.+++||.|..||.|.+|. |.-.+.- |+.-..|.|..+ +.+|+ ..+-++++.+..
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~--~~~~~~~~~~~~ 110 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD--YTVDDVILEVEF 110 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC--eeEEEEEEEEEe
Confidence 469999999999999886 3334444 445569999875 46774 778888887754
No 198
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.16 E-value=20 Score=36.60 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 010942 135 IARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 135 I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
-++|++++|+.|++||+|++++-
T Consensus 65 ~v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 65 EVELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEE
Confidence 36999999999999999999984
No 199
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=47.06 E-value=24 Score=35.75 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.6
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+--|.||.+|++.. .++-|+ .|+.||+|+++.+
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd-~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGD-SVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCC-EEeCCCEEEEEcC
Confidence 35599999999986 789998 9999999999843
No 200
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=47.00 E-value=32 Score=37.11 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=35.2
Q ss_pred EEeCCeeeEEecCcceEEEEE-------------------------------eeCCCCeeecCCCEEEEEecc
Q 010942 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 155 VEtdKa~~ev~ap~~G~l~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~ 196 (497)
+-..+-..+|.|+.+|||..| +.+.|+ .|..|++|+.+..+
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~-~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGD-RVKKGDPLATLYSS 398 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcC-EeCCCCeEEEEeCC
Confidence 456788899999999999987 778997 89999999998643
No 201
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=46.17 E-value=22 Score=39.84 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=25.1
Q ss_pred CceeEEEEEEcCCCC-eecCCCeEEEEEeC
Q 010942 130 MQEGNIARWLKKEGD-KVSPGEVLCEVETD 158 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd-~V~~gd~l~eVEtd 158 (497)
..+|+|.++++++|| .|..|++|+.++.+
T Consensus 161 ~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~ 190 (539)
T PLN02744 161 MEEGYLAKIVKGDGAKEIKVGEVIAITVEE 190 (539)
T ss_pred CCCcEEEEEEecCCCcccCCCCEEEEEccC
Confidence 467999999999996 79999999988543
No 202
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=46.07 E-value=40 Score=38.06 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=40.9
Q ss_pred EcCCCCeecCCCeEEEEE-eCCeeeE--EecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 139 LKKEGDKVSPGEVLCEVE-TDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 139 ~v~~Gd~V~~gd~l~eVE-tdKa~~e--v~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.+++||.|..||++.+|. |.-...- |+.-..|+|..| +.+|+ ..+.++|+.+..
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~--ytv~~~i~~~~~ 179 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN--YTVDDTVLEVEF 179 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEee
Confidence 588899999999999764 4333333 455568999877 47785 889999998864
No 203
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=44.18 E-value=36 Score=37.18 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=34.0
Q ss_pred eCCeeeEEecCcceEEEEE-------------------------------eeCCCCeeecCCCEEEEEecc
Q 010942 157 TDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 157 tdKa~~ev~ap~~G~l~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~ 196 (497)
..+-..+|.|+.+|+|..| +++.|+ .|..|++|+.+..+
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~-~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGD-RVDAGEPLATLHAD 405 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcC-EECCCCeEEEEeCC
Confidence 5778899999999999887 788998 89999999998743
No 204
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=44.13 E-value=34 Score=34.99 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=30.0
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
..-|.||.+|.+. ..++.|+ .|+.||+|+++.+..
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~-~V~~Gq~lg~I~dp~ 265 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGD-TIPAGQPLGRVVDLY 265 (293)
T ss_pred eEEEecCCCeEEE-EecCCCC-EecCCCEEEEEECCC
Confidence 5678999999996 6679998 999999999997643
No 205
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.13 E-value=24 Score=36.16 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.-++|+++.|+.|++||+|++++.
T Consensus 65 ~~v~~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 65 ITVTLAVADGERFEAGDILATVTG 88 (281)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEe
Confidence 356999999999999999999984
No 206
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=44.11 E-value=28 Score=35.77 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=29.3
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
..-|.||.+|.+. ..++.|+ .|+.||+|+++.+.
T Consensus 229 ~~~v~A~~~Gl~~-~~~~~G~-~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIFV-PAKHLGD-IVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEEE-ECcCCCC-EECCCCEEEEEeCC
Confidence 5679999999997 5579998 99999999999764
No 207
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=43.93 E-value=35 Score=34.76 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.8
Q ss_pred eeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 160 a~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
...-+.||.+|.+. ..++.|+ .|+.||+|+.+.+.
T Consensus 218 ~~~~v~A~~~G~~~-~~~~~Gd-~V~~G~~ig~i~d~ 252 (287)
T cd06251 218 SSVWVRAPQGGLLR-SLVKLGD-KVKKGQLLATITDP 252 (287)
T ss_pred CCeEEecCCCeEEE-EecCCCC-EECCCCEEEEEECC
Confidence 33679999999997 4789998 99999999998764
No 208
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=43.73 E-value=19 Score=39.24 Aligned_cols=28 Identities=29% Similarity=0.225 Sum_probs=23.8
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
++-+-=+.|+++.||.|++||+|++|=+
T Consensus 376 iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 376 IDYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 4555667999999999999999999873
No 209
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=43.30 E-value=37 Score=36.98 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=35.0
Q ss_pred EEeCCeeeEEecCcceEEEEE-------------------------------eeCCCCeeecCCCEEEEEecc
Q 010942 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 155 VEtdKa~~ev~ap~~G~l~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~ 196 (497)
+-.-+...+|.|+.+|||..| +++.|| .|..|++|+.+..+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~-~V~~g~~l~~i~~~ 400 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGD-SVKKGESLATIYAN 400 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcC-EeCCCCeEEEEeCC
Confidence 445677899999999999988 788998 89999999998743
No 210
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=43.25 E-value=25 Score=35.72 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.-++|++++|+.|++||+|++|+.
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEE
Confidence 456899999999999999999884
No 211
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=43.09 E-value=19 Score=39.17 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=24.8
Q ss_pred CCCceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 128 PTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 128 ~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
..++-+-=++|+++.||.|++||+||+|=+
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 335556667999999999999999999874
No 212
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=42.65 E-value=26 Score=35.96 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
--++|+++.|+.|++||+|++++.
T Consensus 61 ~~v~~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 61 LTIDDAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 346899999999999999998873
No 213
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.54 E-value=27 Score=35.78 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=20.9
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 010942 135 IARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 135 I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
-++|++++|+.|++||+|++++.
T Consensus 67 ~~~~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 67 AVHWQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEE
Confidence 37999999999999999999985
No 214
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=42.15 E-value=30 Score=34.90 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=38.5
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEE
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~ 192 (497)
|.|+ | ..+|+.|++||.+.-++-. .++.+--|.+-.--...+++|+ .|..|+.|+.
T Consensus 202 g~I~-~-~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~-~V~~Ge~ig~ 257 (259)
T PRK03140 202 NSIE-L-THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQ-EVRLGEKIGT 257 (259)
T ss_pred eEEE-E-ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCC-EEEcChhhcc
Confidence 4554 3 4579999999999988877 6666555543222245567886 7889988874
No 215
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=42.06 E-value=34 Score=34.81 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=30.2
Q ss_pred CeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 159 Ka~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
....-+.||..|.+. ..++.|+ .|+.||+|+.+.+..
T Consensus 221 ~~~~~v~Ap~~G~~~-~~~~~G~-~V~~G~~lg~i~dp~ 257 (288)
T cd06254 221 DDVYYVTSPASGLWY-PFVKAGD-TVQKGALLGYVTDYF 257 (288)
T ss_pred cCCEEEecCCCeEEE-EecCCCC-EecCCCEEEEEECCC
Confidence 345668999999996 5678998 899999999987643
No 216
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.90 E-value=28 Score=35.88 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.-++|++++|+.|++||+|++++.
T Consensus 72 ~~~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 72 VSFTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEEEcCCCCEecCCCEEEEEEE
Confidence 345799999999999999999984
No 217
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=41.48 E-value=22 Score=40.51 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=29.8
Q ss_pred EecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 164 v~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
|-||..|+|.+|.+++|+ .|+.||+|+++....
T Consensus 1109 igAPMpG~vieikvk~G~-kV~Kgqpl~VLSAMK 1141 (1176)
T KOG0369|consen 1109 IGAPMPGTVIEIKVKEGA-KVKKGQPLAVLSAMK 1141 (1176)
T ss_pred ccCCCCCceEEEEEecCc-eecCCCceEeeecce
Confidence 789999999999999998 799999999986543
No 218
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.17 E-value=28 Score=35.27 Aligned_cols=25 Identities=52% Similarity=0.874 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
+--++|++++|+.|++||+|++|+.
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G 80 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEG 80 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEE
Confidence 4556899999999999999999984
No 219
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=41.09 E-value=46 Score=38.00 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=42.3
Q ss_pred ceeEEEEEEcCCCCeecC----CCeEEEEEeCCeeeEEecCcceEEEEE-------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------- 175 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~----gd~l~eVEtdKa~~ev~ap~~G~l~~i------------------------------- 175 (497)
-+|+++... ++-|.|=. ||-++..=+| .+|.||++|+|..+
T Consensus 485 ~~G~v~~L~-~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~ 560 (627)
T PRK09824 485 MTGEVVPLE-QVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGK 560 (627)
T ss_pred cceEEeeHH-HCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCC
Confidence 356665544 55555544 7777765554 47899999999876
Q ss_pred ----eeCCCCeeecCCCEEEEE
Q 010942 176 ----VKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 176 ----~~~~G~~~v~vG~~l~~i 193 (497)
++++|| .|+.||+|+.+
T Consensus 561 gF~~~v~~Gd-~V~~G~~l~~~ 581 (627)
T PRK09824 561 FFTAHVNVGD-KVNTGDLLIEF 581 (627)
T ss_pred CceEEecCCC-EEcCCCEEEEE
Confidence 788997 89999999887
No 220
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=41.05 E-value=29 Score=35.89 Aligned_cols=24 Identities=21% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.-++|++++|+.|++||+|++++.
T Consensus 85 ~~v~~~~~dG~~v~~G~~i~~i~G 108 (296)
T PRK09016 85 VTIEWHVDDGDVITANQTLFELTG 108 (296)
T ss_pred eEEEEEcCCCCEecCCCEEEEEEE
Confidence 346899999999999999999884
No 221
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=41.04 E-value=40 Score=35.71 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=29.0
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
.-|.||..|.+. ..++.|+ .|+.|++|+.+.+..
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd-~V~~G~~lg~I~d~~ 323 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGD-WVEAGDVLAEILDPL 323 (359)
T ss_pred EEEeCCCCeEEE-EecCCCC-EecCCCEEEEEECCC
Confidence 349999999996 6679998 999999999997644
No 222
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.89 E-value=29 Score=35.82 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.-++|+++.||.|++||+|++++.
T Consensus 82 ~~v~~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 82 IEVTWRYREGDRMTADSTVCELEG 105 (294)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEEe
Confidence 447999999999999999999873
No 223
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=40.37 E-value=50 Score=37.52 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=40.3
Q ss_pred eeEEEEEEcCCCCeecC----CCeEEEEEeCCeeeEEecCcceEEEEE--------------------------------
Q 010942 132 EGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI-------------------------------- 175 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~----gd~l~eVEtdKa~~ev~ap~~G~l~~i-------------------------------- 175 (497)
+|+++.. -++-|.|=. ||.++..=+| .+|.||++|+|..+
T Consensus 470 ~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~g 545 (610)
T TIGR01995 470 AGEMLPL-NEVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEG 545 (610)
T ss_pred ceEEeeH-hhCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCC
Confidence 4555554 344454443 6777755543 47889999988876
Q ss_pred ---eeCCCCeeecCCCEEEEE
Q 010942 176 ---VKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 176 ---~~~~G~~~v~vG~~l~~i 193 (497)
++++|| .|+.||+|+.+
T Consensus 546 F~~~v~~g~-~V~~G~~l~~~ 565 (610)
T TIGR01995 546 FEILVKVGD-HVKAGQLLLTF 565 (610)
T ss_pred eEEEecCcC-EEcCCCEEEEe
Confidence 789997 89999999887
No 224
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.28 E-value=30 Score=35.63 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.-++|++++|+.|++||+|++++.
T Consensus 76 ~~v~~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 76 YEVLDRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred eEEEEEcCCCCEecCCCEEEEEEE
Confidence 346899999999999999999884
No 225
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=40.20 E-value=26 Score=38.73 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.5
Q ss_pred CCCCCceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 126 lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
+|-.++-+-=+.++++.||.|++||+|+.|=+
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 34456667778999999999999999999864
No 226
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=40.20 E-value=46 Score=38.93 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=28.7
Q ss_pred EecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 164 v~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
|-||..|+|.++.|+.|+ .|+.|++|+++..
T Consensus 1082 igApmpG~Vv~v~V~~G~-~Vk~Gd~l~~ieA 1112 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKGD-KVKKGDVLAVIEA 1112 (1149)
T ss_pred cCCCCCCceEEEEEccCC-eecCCCeeeehhh
Confidence 889999999999999998 8999999998854
No 227
>PRK09294 acyltransferase PapA5; Provisional
Probab=39.96 E-value=4.2e+02 Score=27.90 Aligned_cols=90 Identities=21% Similarity=0.207 Sum_probs=48.4
Q ss_pred cccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEeec-------------CC--CeEeeeecCcCCCCHHHH
Q 010942 372 RISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQT-------------EN--GLYVPVIRDADKKGLSTI 436 (497)
Q Consensus 372 klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV~t-------------~~--GL~vPVI~~a~~~sl~eI 436 (497)
++|++.++.-|.+.++.+.-... +.. +.+++.|+. .+ |++...+.-....++.++
T Consensus 229 ~~t~~~~l~Aa~~~~l~r~~~~~----~~~------i~~~~pv~~R~~l~p~~~~~~~~n~~g~~~~~~~~~~~~sf~el 298 (416)
T PRK09294 229 RLTVNALVSAAILLAEWQLRRTP----HVP------LPYVYPVDLRFRLTPPVAATEGTNLLGAATYLAEIGPDTDIVDL 298 (416)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCC----CCc------eeeecchhhHhhcCCCCCcccceeeEeeeeeeccccCCCCHHHH
Confidence 48999999999988887652111 000 111222221 11 121111222345699999
Q ss_pred HHHHHHHHHHHhc-CCCC--CCC----CCC------CcEEEecCCcccC
Q 010942 437 AEEVRQLAQKAKD-NSLK--PQD----YEG------GTFTVTNLGGPFG 472 (497)
Q Consensus 437 a~ei~~l~~kar~-g~L~--~~d----~~g------gTfTISNlG~~~G 472 (497)
++++++-.....+ +.+. ..+ +.| .++++||+|. ++
T Consensus 299 a~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~Snlg~-~~ 346 (416)
T PRK09294 299 ARAIAATLRADLADGVIQQSFLHFGTAFEGTPPGLPPVVFITNLGV-AP 346 (416)
T ss_pred HHHHHHHHhhhhhcceeeehhhcccccccCCCCCCCCeEEEecCCc-CC
Confidence 9999876664433 2211 111 112 3899999998 64
No 228
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=39.87 E-value=29 Score=36.11 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.-++|+++.|+.|++||+|++++.
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEE
Confidence 446799999999999999999884
No 229
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=39.59 E-value=54 Score=33.90 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=30.5
Q ss_pred CeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 159 Ka~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
....-|.||.+|.+. ..++.|+ .|+.|++|+++.+.
T Consensus 242 ~~~~~v~A~~~G~~~-~~~~~G~-~V~~G~~lg~i~d~ 277 (316)
T cd06252 242 DARCYVFAPHPGLFE-PLVDLGD-EVSAGQVAGRIHFP 277 (316)
T ss_pred CCcEEEEcCCCeEEE-EecCCCC-EEcCCCEEEEEECC
Confidence 345679999999996 6678997 99999999999764
No 230
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=39.29 E-value=24 Score=38.41 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.4
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
++-+-=+.|+++.||.|++||+|++|=+|+
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 455666899999999999999999987655
No 231
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.21 E-value=32 Score=35.09 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 010942 135 IARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 135 I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
-++|++++|+.|++||+|++++-
T Consensus 59 ~~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 59 ECVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 36899999999999999999884
No 232
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.19 E-value=61 Score=29.80 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=33.3
Q ss_pred eecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCCc
Q 010942 145 KVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEED 199 (497)
Q Consensus 145 ~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~~ 199 (497)
.+++||.|+.| |.+|++....+..|+ .+..|+++|-+..-.++
T Consensus 86 ylkkGd~ll~i-----------PvEGYvVtpIaDvG~-RvrkGd~~AAvttRkG~ 128 (161)
T COG4072 86 YLKKGDELLLI-----------PVEGYVVTPIADVGN-RVRKGDPFAAVTTRKGE 128 (161)
T ss_pred EecCCCEEEEE-----------ecCcEEEEEeecccc-hhcCCCceeEEEecccc
Confidence 35666666655 788999999999998 99999999876544333
No 233
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=39.16 E-value=39 Score=35.25 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=28.8
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..-|.||.+|.+. ..++.|+ .|+.||+|+.+.+
T Consensus 255 ~~~v~Ap~~Gi~~-~~v~~G~-~V~~G~~lg~I~d 287 (325)
T TIGR02994 255 DCFIFAEDDGLIE-FMIDLGD-PVSKGDVIARVYP 287 (325)
T ss_pred CeEEEcCCCeEEE-EecCCCC-EeCCCCEEEEEEC
Confidence 3459999999997 6689998 9999999999976
No 234
>PRK04350 thymidine phosphorylase; Provisional
Probab=38.82 E-value=28 Score=38.41 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=26.8
Q ss_pred CCCCCceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 126 lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
+|-.++-+-=+.++++.||.|++||+|+.|=+
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 44456677778999999999999999999874
No 235
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=38.82 E-value=42 Score=38.46 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=24.5
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
+|+--+.+|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 35667889999999999999999987554
No 236
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=38.74 E-value=26 Score=37.83 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.1
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
++-+-=+.++++.||+|++||+|+.|=+
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYS 397 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeC
Confidence 5556667999999999999999999864
No 237
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=38.06 E-value=34 Score=34.99 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
--++|+++.|+.|++||+|++++.
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 456899999999999999999884
No 238
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.79 E-value=35 Score=35.02 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
..-++|+++.|+.|++||+|++++.
T Consensus 69 ~~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 69 EIEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred ceEEEEEeCCCCEEcCCCEEEEEEE
Confidence 3557999999999999999999874
No 239
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.68 E-value=35 Score=34.93 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.-++|++++|+.|++||+|++++.
T Consensus 58 ~~v~~~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 58 VKVEVRKRDGEEVKAGEVILELKG 81 (278)
T ss_pred CEEEEEcCCCCEecCCCEEEEEEE
Confidence 446889999999999999998884
No 240
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=37.58 E-value=29 Score=28.85 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
-+....|++||.|++||.|+.+...
T Consensus 51 ~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 51 HLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EESEESS-TTSEE-TTCEEEEEBSC
T ss_pred ccccccceecccccCCCEEEecCCC
Confidence 3445558999999999999999853
No 241
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=37.35 E-value=30 Score=38.31 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCCCCceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 126 lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
+|-.++-+-=+.++++.||.|++||+|+.|=+
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 44456667778999999999999999999874
No 242
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=36.90 E-value=35 Score=34.63 Aligned_cols=22 Identities=59% Similarity=1.113 Sum_probs=19.7
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 010942 136 ARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
++|++++|+.|++||+|++++-
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 4799999999999999999884
No 243
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=36.79 E-value=52 Score=32.27 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.8
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVE 156 (497)
..|.|..+.+.+|+.|..|++|+.|-
T Consensus 95 ~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 95 FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 46899999999999999999999875
No 244
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=36.43 E-value=38 Score=33.73 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=36.4
Q ss_pred CCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEE
Q 010942 143 GDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (497)
Q Consensus 143 Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~ 192 (497)
|+.|++||.+.-++- -.++.+--|.+-+-.+..+++|+ .|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~f-GStVvllf~~~~~~~~~~v~~g~-kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFEL-GSTVILLFEADAFQLSAHLAVGQ-EVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcC-CCeEEEEEeCCCcccChhhccCC-EEEcChhhcc
Confidence 999999999999987 46666665543222256788997 8999999874
No 245
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=35.96 E-value=75 Score=35.96 Aligned_cols=57 Identities=26% Similarity=0.401 Sum_probs=42.0
Q ss_pred EcCCCCeecCCCeEEEEEeCC-ee--eEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCC
Q 010942 139 LKKEGDKVSPGEVLCEVETDK-AT--VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 139 ~v~~Gd~V~~gd~l~eVEtdK-a~--~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
.+++||.|..||.|.+|.-.. .. +=|+.-..|++..| +.+|+ ..+-++|+.+.+.++
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~--ytv~~~i~~~~~~~G 182 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD--YTVDDTIAVLEDEDG 182 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEEccCC
Confidence 478999999999999976441 21 12455568999777 47785 889999998865443
No 246
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=35.36 E-value=47 Score=35.43 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=17.2
Q ss_pred ceeEEEEE-------EcCCCCeecCCCeEE
Q 010942 131 QEGNIARW-------LKKEGDKVSPGEVLC 153 (497)
Q Consensus 131 ~eg~I~~w-------~v~~Gd~V~~gd~l~ 153 (497)
.+|.|++. .|++||.|++||+|.
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLI 225 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLI 225 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEE
Confidence 45666665 467888888888887
No 247
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=35.05 E-value=60 Score=34.64 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=35.4
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEe-------eCCCCeeecCCCEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV-------KGDGSKEIKVGEVIA 191 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~-------~~~G~~~v~vG~~l~ 191 (497)
-+|+-+...|.|-... +...+..--+|-|..+|+|.++. |++|| .|+.||+|.
T Consensus 166 ~~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd-~VkkGdvLI 225 (385)
T PF06898_consen 166 IKGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGD-TVKKGDVLI 225 (385)
T ss_pred EEeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCC-EECCCCEEE
Confidence 3466666666654433 33334455778899999999985 56676 777888774
No 248
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=34.67 E-value=69 Score=34.72 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=35.2
Q ss_pred EEEeCCeeeEEecCcceEEEEE-------------------------------eeCCCCeeecCCCEEEEEeccC
Q 010942 154 EVETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 154 eVEtdKa~~ev~ap~~G~l~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
.+..-+-..+|.|..+|+|..+ +.+.|+ .|++|++|+.+..+.
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge-~Vk~Gd~l~tiya~~ 402 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGE-KVKKGDPLATIYAES 402 (435)
T ss_pred hcccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCC-eeccCCeEEEEecCC
Confidence 4455677888999999999887 678897 899999999987633
No 249
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=34.18 E-value=34 Score=37.97 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=28.6
Q ss_pred EecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 164 v~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
+-||..|+|.+++++.|+ .|..||.|+++...
T Consensus 604 ~~aPMpG~Iekv~Vkpgd-~V~~Gq~l~Vl~AM 635 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGD-KVKEGQELVVLIAM 635 (670)
T ss_pred eecCCCCeeeeeeccchh-hhcccCceEEEEec
Confidence 689999999999999998 89999999887543
No 250
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=33.99 E-value=50 Score=30.82 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=28.1
Q ss_pred CeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCCcc
Q 010942 144 DKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 200 (497)
Q Consensus 144 d~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~~~ 200 (497)
=.+++|+-|+.++. +|+..-+.+.+|+ .|..|+.||.+.....++
T Consensus 74 ~~l~~G~~L~l~~v-----------eG~~v~~i~~~G~-rV~~gd~lA~v~T~KGeV 118 (150)
T PF09891_consen 74 ILLKKGTELCLVPV-----------EGYQVYPIVDEGD-RVRKGDRLAYVTTRKGEV 118 (150)
T ss_dssp EEE-TT-B-EEEEE-----------ESSEEEESS-TSE-EE-TT-EEEEEE-TTS-E
T ss_pred EEECCCCEEEEEEe-----------cceEEEEEcccCc-EeccCcEEEEEEecCcce
Confidence 35677888888874 5666678889997 999999999986655443
No 251
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=33.04 E-value=49 Score=33.90 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=39.7
Q ss_pred EEEEEEcCC----CCeecCCCeEEEEEeCCeeeEEecCcceEEE-EEeeCCCCeeecCCCEEEEEe
Q 010942 134 NIARWLKKE----GDKVSPGEVLCEVETDKATVEMECMEEGYLA-KIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 134 ~I~~w~v~~----Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~-~i~~~~G~~~v~vG~~l~~i~ 194 (497)
.+..|.... |..|++||.+.-.+=. .++.+--|.+ .+. ...+.+|+ .|..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~-kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGS-VVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCC-EEEcChhhcCcc
Confidence 455565532 7799999999998874 5665554433 331 23467897 899999998653
No 252
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=32.17 E-value=91 Score=35.26 Aligned_cols=53 Identities=32% Similarity=0.431 Sum_probs=40.5
Q ss_pred cCCCCeecCCCeEEEE-EeCCeeeE--EecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 140 KKEGDKVSPGEVLCEV-ETDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 140 v~~Gd~V~~gd~l~eV-EtdKa~~e--v~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+++||.|..||++++| ||.-.+.. ++.-..|+|..| +.+|+ ..+-++|+.+..
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~--~~~~~~v~~~~~ 176 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD--YTVEDTIAVVDT 176 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC--ceeeeeEEEEec
Confidence 7899999999999988 55444433 344579999877 47785 889999998753
No 253
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=30.64 E-value=72 Score=34.09 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred EcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeec
Q 010942 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIK 185 (497)
Q Consensus 139 ~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~ 185 (497)
.|++||.|++||+|..=+-.+-.....-..+|.|....--+.+.+++
T Consensus 208 ~Vk~GD~VkkGqvLIsG~i~~~~~~~~v~A~g~V~a~t~ye~~~~vp 254 (382)
T TIGR02876 208 VVKKGDVVKKGDLLISGILGKEGKTYTVHAEGEVFARTWYEKTVEVP 254 (382)
T ss_pred EEccCCEEcCCCEEEEeEeCCCCceEEEccceEEEEEEEEEEEEEEe
No 254
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=29.24 E-value=47 Score=32.96 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=53.7
Q ss_pred EEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEe-----CCee----------eEEecCcceEEEEEeeCCCCeee
Q 010942 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVET-----DKAT----------VEMECMEEGYLAKIVKGDGSKEI 184 (497)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEt-----dKa~----------~ev~ap~~G~l~~i~~~~G~~~v 184 (497)
.+....+||+++---+.+-.|-+||.+.-|+.+++|-. -|.. .-.+....|...+++ ++| .|
T Consensus 78 ~l~~G~fGENLtv~Gl~e~~v~IGD~~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RVL-~~G--~V 154 (223)
T PRK11536 78 LFVAPAFGENLSTDGLTESNVFIGDIFRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRVI-APG--KV 154 (223)
T ss_pred ccCCCCccCCEEecCcChhhCCccCEEEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEEE-CCc--EE
Confidence 35567899998877788889999999999999988864 1211 112345679988776 788 49
Q ss_pred cCCCEEEEE
Q 010942 185 KVGEVIAIT 193 (497)
Q Consensus 185 ~vG~~l~~i 193 (497)
.+|+.|-.+
T Consensus 155 ~~GD~v~l~ 163 (223)
T PRK11536 155 SADAPLELV 163 (223)
T ss_pred cCCCEEEEE
Confidence 999999876
No 255
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=28.65 E-value=75 Score=25.95 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred CcceEEEEEeeCCCCeeecCCCEEEEEeccCC
Q 010942 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 167 p~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
+..|+. ++++.|| .|..|++|+.+....+
T Consensus 30 ~~vGi~--l~~k~Gd-~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGIE--LHKKVGD-RVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EEE--ESS-TTS-EEBTTSEEEEEEESSS
T ss_pred cCcCeE--ecCcCcC-EECCCCeEEEEEcCCh
Confidence 344554 6789998 8999999999876544
No 256
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=28.53 E-value=63 Score=40.14 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=30.7
Q ss_pred EEEcCCCCeecCCCeEEEEEe--------CCeeeEEecCcceEE
Q 010942 137 RWLKKEGDKVSPGEVLCEVET--------DKATVEMECMEEGYL 172 (497)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~eVEt--------dKa~~ev~ap~~G~l 172 (497)
.++|+.|+.|++||+|+|+.. +|+...|-|..+|.|
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v 448 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEM 448 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEE
Confidence 478999999999999999974 556678889999885
No 257
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=28.02 E-value=89 Score=31.59 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCCCeecC-CCeEEEEEeCCeeeEEecCcceEE
Q 010942 141 KEGDKVSP-GEVLCEVETDKATVEMECMEEGYL 172 (497)
Q Consensus 141 ~~Gd~V~~-gd~l~eVEtdKa~~ev~ap~~G~l 172 (497)
..|+.|.+ |++|++.. .-++.+|++|.+
T Consensus 227 ~~~~~~~~~G~~la~~~----~~~~~ap~~g~v 255 (272)
T cd06910 227 RGGETIPRAGTVIAHDG----GEPIRTPYDDCV 255 (272)
T ss_pred CCcceeccCCcEEEEeC----CeEEeCCCCCEE
Confidence 34556666 66666532 255666666655
No 258
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=27.79 E-value=47 Score=33.67 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.2
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEE
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~ 192 (497)
--+...+-|..-+.++++|| .|+.||+|.+
T Consensus 30 al~~~Df~g~~Pkm~VkeGD-~Vk~Gq~LF~ 59 (257)
T PF05896_consen 30 ALLPDDFPGMKPKMLVKEGD-RVKAGQPLFE 59 (257)
T ss_pred EEcCcccCCCCccEEeccCC-EEeCCCeeEe
Confidence 34667888999999999998 8999999985
No 259
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.50 E-value=59 Score=32.03 Aligned_cols=70 Identities=16% Similarity=0.335 Sum_probs=52.9
Q ss_pred EecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCC--------------eeeE-EecCcceEEEEEeeCCCCeeec
Q 010942 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDK--------------ATVE-MECMEEGYLAKIVKGDGSKEIK 185 (497)
Q Consensus 121 i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK--------------a~~e-v~ap~~G~l~~i~~~~G~~~v~ 185 (497)
+.-+.+||+++---|.+-.+..||.+.-|++|.||---. .... -++-..|+..+++ ++| .|.
T Consensus 76 l~pg~fGENltt~Gl~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~~~~~~~~~~~G~~G~y~RVL-~~G--~v~ 152 (210)
T COG2258 76 LQPGAFGENLTTSGLDEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGIPDLAKRFQQTGRTGWYARVL-EEG--KVR 152 (210)
T ss_pred CCcccccCceeecCcchhhccccCEEEeccEEEEecCCCCchHHHHHhcCCccHHHHhhccCcccEEEEEc-ccc--eec
Confidence 446788999988889999999999999999999996411 1111 2344568888776 777 499
Q ss_pred CCCEEEEE
Q 010942 186 VGEVIAIT 193 (497)
Q Consensus 186 vG~~l~~i 193 (497)
+|++|-++
T Consensus 153 ~gD~l~l~ 160 (210)
T COG2258 153 AGDPLKLI 160 (210)
T ss_pred CCCceEEe
Confidence 99999765
No 260
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=27.21 E-value=34 Score=34.05 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=26.1
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCCeeeE
Q 010942 136 ARWLKKEGDKVSPGEVLCEVETDKATVE 163 (497)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~eVEtdKa~~e 163 (497)
..|+|.+|..+++=|+.|.||.||+.++
T Consensus 180 asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 180 ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred cccccccccceeeEEEEEEEEcCccccc
Confidence 3699999999999999999999999887
No 261
>COG3608 Predicted deacylase [General function prediction only]
Probab=27.08 E-value=1.1e+02 Score=32.24 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=33.4
Q ss_pred CeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 150 EVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 150 d~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
......+++ .--+.||..|.|. .++..|| .|..|++|+++.+-
T Consensus 247 ~~~~~~~~~--~~~i~Ap~~G~v~-~~v~lGd-~VeaG~~la~i~~~ 289 (331)
T COG3608 247 TKGLALPSS--DEMIRAPAGGLVE-FLVDLGD-KVEAGDVLATIHDP 289 (331)
T ss_pred cceeecccc--cceeecCCCceEE-EeecCCC-cccCCCeEEEEecC
Confidence 444455555 4458999999985 7889998 89999999998653
No 262
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.57 E-value=68 Score=33.13 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.1
Q ss_pred eEEEEEEc--CCCCeecCCCeEEEEEe
Q 010942 133 GNIARWLK--KEGDKVSPGEVLCEVET 157 (497)
Q Consensus 133 g~I~~w~v--~~Gd~V~~gd~l~eVEt 157 (497)
....+|++ +.|+.|++||+|++++.
T Consensus 70 ~~~~~~~~~~~dG~~v~~G~~i~~v~G 96 (290)
T PRK06559 70 EVTFQNPHQFKDGDRLTSGDLVLEIIG 96 (290)
T ss_pred cEEEEEeecCCCCCEecCCCEEEEEEE
Confidence 34568888 99999999999999984
No 263
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=26.33 E-value=66 Score=33.91 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
.+++ |.+++|+.|.+|++|++||..
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~ 93 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGP 93 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEc
Confidence 3554 899999999999999999863
No 264
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=25.00 E-value=1.3e+02 Score=26.09 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=30.2
Q ss_pred ecCCCeEEEEEe-CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 146 VSPGEVLCEVET-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 146 V~~gd~l~eVEt-dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
...+..|-++.. +++.+.+ ....|.-.+.+|++|| .|..||.|+..
T Consensus 15 ~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd-~V~~GQ~Ia~~ 61 (101)
T PF13375_consen 15 LSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGD-KVKKGQLIAEA 61 (101)
T ss_pred cccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCC-EEcCCCEEEec
Confidence 445555555543 3333333 3345666778999998 89999999964
No 265
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=24.36 E-value=1.6e+02 Score=35.78 Aligned_cols=69 Identities=32% Similarity=0.453 Sum_probs=49.0
Q ss_pred EEecCCCCCCCceeEEEEEE----cCCCCeecCCCeEEEEE-eCCeeeE--EecCcceEEEEEeeCCCCeeecCCCEEEE
Q 010942 120 EIGMPSLSPTMQEGNIARWL----KKEGDKVSPGEVLCEVE-TDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (497)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~w~----v~~Gd~V~~gd~l~eVE-tdKa~~e--v~ap~~G~l~~i~~~~G~~~v~vG~~l~~ 192 (497)
=|.+|.|..+ .+|. +++||.|..||++.+|. |.=.+.- ++.-..|+|+.| +.+|+ ..+-++|+.
T Consensus 106 g~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~--~~~~~~~~~ 176 (1017)
T PRK14698 106 GISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE--YTIEEVIAK 176 (1017)
T ss_pred CCCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC--cceeeEEEE
Confidence 3456777653 2453 68899999999999875 4334433 455568999877 46885 889999998
Q ss_pred EeccC
Q 010942 193 TVEEE 197 (497)
Q Consensus 193 i~~~~ 197 (497)
+...+
T Consensus 177 ~~~~~ 181 (1017)
T PRK14698 177 VKTPS 181 (1017)
T ss_pred EEcCC
Confidence 86533
No 266
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=24.23 E-value=95 Score=38.83 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=42.3
Q ss_pred CCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 142 EGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 142 ~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.|-.+.-|-..|..|-+-=-.-+.||..|.|.+.+++.|+ -|.+|++-|.+
T Consensus 666 ~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~-hv~~Gq~YAei 716 (2196)
T KOG0368|consen 666 DGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGE-HVEAGQPYAEI 716 (2196)
T ss_pred ceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCC-ceecCCeeeeh
Confidence 3555677777777777666666899999999999999998 89999998876
No 267
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=23.41 E-value=75 Score=34.76 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=26.0
Q ss_pred CcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 167 p~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
...|.|+++.-+||| .+..|++|+++..+.
T Consensus 50 MeeGnIvsW~kKeGd-kls~GDvl~EVETDK 79 (470)
T KOG0557|consen 50 MEEGNIVSWKKKEGD-KLSAGDVLLEVETDK 79 (470)
T ss_pred ccCCceeeEeeccCC-ccCCCceEEEEeccc
Confidence 468999999999998 899999999985443
No 268
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=23.12 E-value=48 Score=34.70 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=11.2
Q ss_pred EeeCCCCeeecCCCEEEEEec
Q 010942 175 IVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 175 i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+.|++|+ .|+.||.|+.+..
T Consensus 272 i~Vk~Gq-~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 272 MLVREQQ-EVKAGQKIATMGS 291 (319)
T ss_pred cccCCcC-EECCCCeEEeEcC
Confidence 4455564 5666666665544
No 269
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=22.90 E-value=1.7e+02 Score=24.25 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=24.6
Q ss_pred CeeeEEecCcceEE----------------EEEeeCCCCeeecCCCEEEEEec
Q 010942 159 KATVEMECMEEGYL----------------AKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 159 Ka~~ev~ap~~G~l----------------~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+++..+-+..+|+| .++++++|+ .|..|++|+.+..
T Consensus 17 ~~~a~i~are~gV~aG~~~~~~i~~~l~~~v~~~~~dG~-~v~~g~~i~~i~G 68 (88)
T PF02749_consen 17 TGTATIIAREDGVLAGLEEAEEIFEKLGLEVEWLVKDGD-RVEPGDVILEIEG 68 (88)
T ss_dssp EEEEEEEESSSEEE-SHHHHHHHHHHCTEEEEESS-TT--EEETTCEEEEEEE
T ss_pred EEEEEEEeCCCEEEECHHHHHHHHhhccEEEEEEeCCCC-CccCCcEEEEEEe
Confidence 34455556666655 457889997 9999999998754
No 270
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=22.52 E-value=74 Score=34.49 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.1
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
++-+-=+..+++.||.|++||+|+.|=+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 5556667899999999999999998866
No 271
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=22.32 E-value=94 Score=32.97 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 010942 135 IARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 135 I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
+..|.+++|+.|.+|++|++||.
T Consensus 72 ~~i~a~~eG~~v~~gepvl~i~G 94 (352)
T PRK07188 72 LKIRYLKDGDIINPFETVLEIEG 94 (352)
T ss_pred eEEEEcCCCCEecCCCEEEEEEE
Confidence 46889999999999999999885
No 272
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=20.35 E-value=3.8e+02 Score=20.08 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=31.4
Q ss_pred CccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCc
Q 010942 339 TIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCN 394 (497)
Q Consensus 339 ~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lN 394 (497)
+.|+|++..+-++-. +++...+. .| -|++.-|+.++..+|++...++
T Consensus 3 ~~~~f~lRlP~~l~~------~lk~~A~~-~g--RS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 3 KDPQFNLRLPEELKE------KLKERAEE-NG--RSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CSEEEEEECEHHHHH------HHHHHHHH-TT--S-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCceeeECCHHHHH------HHHHHHHH-hC--CChHHHHHHHHHHHHhccccCC
Confidence 468888887754333 33332222 23 6999999999999999877665
Done!