Query 010942
Match_columns 497
No_of_seqs 249 out of 2032
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 2.7E-81 9.1E-86 662.6 1.2 367 118-497 2-378 (428)
2 3mae_A 2-oxoisovalerate dehydr 100.0 2.4E-49 8.1E-54 392.4 15.3 181 316-497 17-197 (256)
3 1scz_A E2, dihydrolipoamide su 100.0 1E-48 3.5E-53 383.3 15.3 180 317-497 4-183 (233)
4 3rqc_A Probable lipoamide acyl 100.0 7.6E-48 2.6E-52 375.1 18.4 176 316-497 5-182 (224)
5 3l60_A Branched-chain alpha-ke 100.0 5.7E-48 2E-52 381.2 15.5 171 321-497 18-192 (250)
6 1dpb_A Dihydrolipoyl-transacet 100.0 2.4E-47 8.3E-52 375.7 16.9 179 317-497 15-195 (243)
7 3b8k_A PDCE2;, dihydrolipoylly 100.0 3.8E-47 1.3E-51 373.5 14.1 180 315-497 10-189 (239)
8 2ii3_A Lipoamide acyltransfera 100.0 9.7E-47 3.3E-51 375.0 16.4 179 316-497 30-210 (262)
9 2xt6_A 2-oxoglutarate decarbox 100.0 4.1E-37 1.4E-41 356.0 16.1 164 332-497 1-173 (1113)
10 1q23_A Chloramphenicol acetylt 100.0 7.2E-32 2.5E-36 261.6 17.2 153 326-496 18-179 (219)
11 3cla_A Type III chloramphenico 100.0 2E-31 6.8E-36 257.5 15.7 147 338-496 23-175 (213)
12 2i9d_A Chloramphenicol acetylt 100.0 5.2E-30 1.8E-34 248.3 14.5 147 338-496 25-183 (217)
13 1zy8_K Pyruvate dehydrogenase 100.0 3.1E-31 1.1E-35 258.5 4.4 166 118-295 3-169 (229)
14 1y8o_B Dihydrolipoyllysine-res 99.8 8.4E-20 2.9E-24 162.7 12.8 99 105-203 14-112 (128)
15 2dne_A Dihydrolipoyllysine-res 99.8 2.7E-19 9.3E-24 155.0 10.3 91 114-204 3-93 (108)
16 3crk_C Dihydrolipoyllysine-res 99.8 3.3E-18 1.1E-22 142.1 12.1 83 115-197 2-84 (87)
17 2dnc_A Pyruvate dehydrogenase 99.8 5.4E-18 1.8E-22 144.3 11.7 83 116-199 5-88 (98)
18 1k8m_A E2 component of branche 99.7 1.7E-17 6E-22 139.7 10.6 79 116-195 2-80 (93)
19 1ghj_A E2, E2, the dihydrolipo 99.7 1.3E-16 4.4E-21 129.7 9.3 75 119-194 2-76 (79)
20 1pmr_A Dihydrolipoyl succinylt 99.6 3E-17 1E-21 134.1 0.1 75 119-194 3-77 (80)
21 1qjo_A Dihydrolipoamide acetyl 99.6 1.4E-15 4.7E-20 123.7 9.0 75 119-196 3-77 (80)
22 2l5t_A Lipoamide acyltransfera 99.6 1.2E-15 4.1E-20 123.3 8.6 75 119-194 2-76 (77)
23 1iyu_A E2P, dihydrolipoamide a 99.6 9.1E-15 3.1E-19 118.8 10.3 73 119-195 2-74 (79)
24 1gjx_A Pyruvate dehydrogenase; 99.5 3.4E-15 1.2E-19 121.7 5.1 76 118-195 2-77 (81)
25 2k7v_A Dihydrolipoyllysine-res 99.4 9E-14 3.1E-18 114.7 1.9 71 119-196 3-73 (85)
26 2kcc_A Acetyl-COA carboxylase 99.3 3.4E-12 1.2E-16 105.1 7.4 65 130-196 11-75 (84)
27 1z6h_A Biotin/lipoyl attachmen 99.3 8.9E-12 3E-16 98.7 9.4 64 131-195 6-69 (72)
28 2jku_A Propionyl-COA carboxyla 99.3 1.7E-12 5.9E-17 109.2 3.3 78 115-193 12-93 (94)
29 2dn8_A Acetyl-COA carboxylase 99.2 2.9E-11 9.9E-16 102.7 9.1 63 131-195 24-86 (100)
30 2eq9_C Pyruvate dehydrogenase 99.2 6.6E-12 2.3E-16 89.8 3.6 40 255-294 1-40 (41)
31 3rnm_E Lipoamide acyltransfera 99.2 6.4E-12 2.2E-16 96.7 3.3 43 253-295 6-48 (58)
32 2d5d_A Methylmalonyl-COA decar 99.2 1.3E-10 4.5E-15 92.2 9.6 62 131-193 12-73 (74)
33 2eq8_C Pyruvate dehydrogenase 99.1 2.3E-11 7.7E-16 86.5 3.6 37 257-293 2-38 (40)
34 1dcz_A Transcarboxylase 1.3S s 99.1 1.6E-10 5.5E-15 92.7 8.8 62 131-193 15-76 (77)
35 1bdo_A Acetyl-COA carboxylase; 99.1 1.2E-10 4.2E-15 94.4 7.7 56 137-193 24-79 (80)
36 2ejm_A Methylcrotonoyl-COA car 99.1 1.2E-10 4.1E-15 98.7 7.9 66 131-197 21-86 (99)
37 2eq7_C 2-oxoglutarate dehydrog 99.1 1.7E-11 5.7E-16 87.2 2.1 37 257-293 2-38 (40)
38 1bal_A Dihydrolipoamide succin 99.1 3.1E-11 1.1E-15 90.5 2.8 42 253-294 8-49 (51)
39 1w85_I Dihydrolipoyllysine-res 99.1 4E-11 1.4E-15 89.1 3.2 41 254-294 6-46 (49)
40 3n6r_A Propionyl-COA carboxyla 99.0 2.8E-10 9.7E-15 126.7 9.4 62 131-193 619-680 (681)
41 3va7_A KLLA0E08119P; carboxyla 99.0 3.2E-10 1.1E-14 133.2 9.3 61 132-193 1175-1235(1236)
42 1w4i_A Pyruvate dehydrogenase 99.0 2.1E-10 7.3E-15 89.4 3.9 43 254-296 4-46 (62)
43 2f60_K Pyruvate dehydrogenase 99.0 1.3E-10 4.4E-15 91.2 2.5 43 253-295 8-50 (64)
44 2coo_A Lipoamide acyltransfera 99.0 3.9E-10 1.3E-14 90.0 5.1 43 254-296 15-57 (70)
45 3hbl_A Pyruvate carboxylase; T 99.0 8.5E-10 2.9E-14 129.1 9.0 63 131-194 1084-1146(1150)
46 3u9t_A MCC alpha, methylcroton 98.9 7.9E-11 2.7E-15 131.0 0.0 63 131-194 609-671 (675)
47 2k32_A A; NMR {Campylobacter j 98.7 1.7E-08 5.9E-13 87.2 6.1 66 131-197 8-103 (116)
48 3bg3_A Pyruvate carboxylase, m 98.7 7.1E-09 2.4E-13 115.6 3.4 62 131-193 656-717 (718)
49 1zko_A Glycine cleavage system 98.6 4E-08 1.4E-12 88.1 7.1 67 121-194 39-113 (136)
50 2qf7_A Pyruvate carboxylase pr 98.6 1.9E-08 6.6E-13 117.9 5.5 62 131-193 1102-1163(1165)
51 1hpc_A H protein of the glycin 98.2 5.8E-07 2E-11 80.1 4.1 47 134-180 37-84 (131)
52 3a7l_A H-protein, glycine clea 98.2 1.2E-06 4.3E-11 77.6 6.2 55 120-180 30-85 (128)
53 1onl_A Glycine cleavage system 98.2 1.8E-06 6.2E-11 76.6 6.1 66 121-193 30-103 (128)
54 3klr_A Glycine cleavage system 97.7 6.3E-05 2.2E-09 66.3 6.6 47 133-179 32-79 (125)
55 3ne5_B Cation efflux system pr 97.7 6E-05 2.1E-09 78.8 7.6 65 131-196 128-241 (413)
56 3lnn_A Membrane fusion protein 97.7 5.6E-05 1.9E-09 76.8 7.1 66 131-197 64-206 (359)
57 2f1m_A Acriflavine resistance 97.6 2E-05 6.9E-10 77.3 2.9 66 131-197 29-167 (277)
58 3fpp_A Macrolide-specific effl 97.6 6.5E-05 2.2E-09 75.7 6.0 65 131-196 38-190 (341)
59 3mxu_A Glycine cleavage system 97.5 0.00012 4E-09 66.0 6.6 47 133-179 54-101 (143)
60 3tzu_A GCVH, glycine cleavage 97.5 0.00012 4.2E-09 65.4 6.3 44 133-176 49-93 (137)
61 1vf7_A Multidrug resistance pr 97.3 9.6E-05 3.3E-09 75.9 2.9 65 131-196 50-173 (369)
62 3hgb_A Glycine cleavage system 97.2 0.00046 1.6E-08 62.8 6.6 44 133-176 59-103 (155)
63 4dk0_A Putative MACA; alpha-ha 96.7 0.00011 3.8E-09 74.7 -2.7 63 131-194 39-189 (369)
64 3na6_A Succinylglutamate desuc 96.2 0.013 4.5E-07 59.5 9.0 61 133-196 265-329 (331)
65 3cdx_A Succinylglutamatedesucc 95.9 0.022 7.4E-07 58.3 9.3 59 135-196 277-339 (354)
66 3fmc_A Putative succinylglutam 95.9 0.019 6.6E-07 59.1 8.8 60 133-195 298-363 (368)
67 2dn8_A Acetyl-COA carboxylase 95.7 0.0047 1.6E-07 51.7 2.6 46 149-195 5-50 (100)
68 1z6h_A Biotin/lipoyl attachmen 94.7 0.036 1.2E-06 42.7 4.7 32 163-195 1-32 (72)
69 1dcz_A Transcarboxylase 1.3S s 94.6 0.042 1.4E-06 43.0 4.9 34 161-195 8-41 (77)
70 2d5d_A Methylmalonyl-COA decar 94.3 0.057 1.9E-06 41.7 5.1 33 162-195 6-38 (74)
71 2k32_A A; NMR {Campylobacter j 93.9 0.063 2.2E-06 45.5 4.9 33 162-195 2-34 (116)
72 2qj8_A MLR6093 protein; struct 93.8 0.15 5.3E-06 51.3 8.5 60 133-195 265-328 (332)
73 1f3z_A EIIA-GLC, glucose-speci 93.7 0.066 2.2E-06 49.0 4.9 58 131-193 19-115 (161)
74 2kcc_A Acetyl-COA carboxylase 93.1 0.062 2.1E-06 43.3 3.4 33 162-195 6-38 (84)
75 2gpr_A Glucose-permease IIA co 92.9 0.073 2.5E-06 48.3 3.9 58 131-193 14-110 (154)
76 1ax3_A Iiaglc, glucose permeas 91.9 0.1 3.5E-06 47.7 3.6 59 130-193 18-115 (162)
77 2f1m_A Acriflavine resistance 91.7 0.17 5.7E-06 49.1 5.1 52 141-194 3-54 (277)
78 2xha_A NUSG, transcription ant 91.0 0.19 6.6E-06 47.1 4.6 32 137-174 22-53 (193)
79 2jku_A Propionyl-COA carboxyla 90.8 0.11 3.6E-06 42.9 2.3 34 161-195 25-58 (94)
80 2ejm_A Methylcrotonoyl-COA car 90.8 0.2 6.8E-06 41.6 4.0 34 161-195 14-47 (99)
81 3lnn_A Membrane fusion protein 90.5 0.2 6.7E-06 50.4 4.5 55 140-195 35-90 (359)
82 1bdo_A Acetyl-COA carboxylase; 90.5 0.22 7.6E-06 39.2 3.9 33 162-195 5-44 (80)
83 2l5t_A Lipoamide acyltransfera 90.4 0.24 8.1E-06 38.8 4.0 27 131-157 51-77 (77)
84 3fpp_A Macrolide-specific effl 88.9 0.42 1.4E-05 47.6 5.3 54 140-195 11-64 (341)
85 3d4r_A Domain of unknown funct 88.8 0.58 2E-05 42.8 5.7 46 131-176 107-153 (169)
86 1ghj_A E2, E2, the dihydrolipo 88.1 0.38 1.3E-05 37.8 3.6 28 131-158 51-78 (79)
87 1qjo_A Dihydrolipoamide acetyl 87.0 0.35 1.2E-05 38.0 2.8 28 131-158 50-77 (80)
88 2xhc_A Transcription antitermi 86.6 0.6 2E-05 47.8 4.9 31 137-173 62-92 (352)
89 1k8m_A E2 component of branche 86.4 0.62 2.1E-05 38.2 4.0 28 131-158 54-81 (93)
90 3crk_C Dihydrolipoyllysine-res 86.3 0.62 2.1E-05 37.5 3.9 28 167-195 17-44 (87)
91 3ne5_B Cation efflux system pr 86.3 0.62 2.1E-05 48.2 5.0 54 140-194 99-154 (413)
92 1iyu_A E2P, dihydrolipoamide a 86.1 0.52 1.8E-05 37.0 3.3 28 131-158 48-75 (79)
93 1vf7_A Multidrug resistance pr 85.1 0.59 2E-05 47.5 4.0 52 141-194 24-75 (369)
94 1gjx_A Pyruvate dehydrogenase; 83.9 0.68 2.3E-05 36.4 3.0 31 164-195 10-40 (81)
95 2auk_A DNA-directed RNA polyme 82.9 1.3 4.4E-05 41.3 5.0 42 137-180 63-104 (190)
96 2dnc_A Pyruvate dehydrogenase 82.9 1.3 4.5E-05 36.6 4.5 28 168-196 20-47 (98)
97 2k7v_A Dihydrolipoyllysine-res 82.3 0.57 2E-05 37.4 2.0 28 131-158 46-73 (85)
98 2dne_A Dihydrolipoyllysine-res 81.9 0.97 3.3E-05 38.2 3.4 28 167-195 19-46 (108)
99 1y8o_B Dihydrolipoyllysine-res 80.8 1.1 3.8E-05 39.2 3.5 28 131-158 77-105 (128)
100 4dk0_A Putative MACA; alpha-ha 78.5 0.54 1.9E-05 47.2 0.9 54 140-195 12-65 (369)
101 3n6r_A Propionyl-COA carboxyla 77.2 2.1 7.2E-05 47.4 5.2 35 161-196 612-646 (681)
102 2xha_A NUSG, transcription ant 75.8 0.92 3.1E-05 42.5 1.5 45 140-191 85-157 (193)
103 3our_B EIIA, phosphotransferas 75.2 4.7 0.00016 37.4 6.1 17 176-193 121-137 (183)
104 1pmr_A Dihydrolipoyl succinylt 73.9 0.53 1.8E-05 37.1 -0.6 27 131-157 52-78 (80)
105 2bco_A Succinylglutamate desuc 70.1 4.4 0.00015 41.0 5.1 51 138-196 279-329 (350)
106 3hbl_A Pyruvate carboxylase; T 69.9 3.8 0.00013 48.1 5.2 34 162-196 1078-1111(1150)
107 3va7_A KLLA0E08119P; carboxyla 69.9 3.8 0.00013 48.5 5.1 36 161-197 1167-1202(1236)
108 2gpr_A Glucose-permease IIA co 67.3 3.7 0.00013 37.0 3.4 28 131-158 86-113 (154)
109 3bg3_A Pyruvate carboxylase, m 67.1 3.1 0.0001 46.4 3.4 34 162-196 650-683 (718)
110 3lu0_D DNA-directed RNA polyme 65.6 5 0.00017 47.5 4.8 35 137-173 1002-1036(1407)
111 2qf7_A Pyruvate carboxylase pr 60.6 5.9 0.0002 46.6 4.3 33 162-195 1096-1128(1165)
112 3dva_I Dihydrolipoyllysine-res 58.7 2 6.9E-05 44.9 0.0 31 130-160 51-81 (428)
113 3u9t_A MCC alpha, methylcroton 58.7 2 6.9E-05 47.5 0.0 33 162-195 603-635 (675)
114 3our_B EIIA, phosphotransferas 58.5 5.4 0.00018 37.0 2.8 28 132-159 114-141 (183)
115 1brw_A PYNP, protein (pyrimidi 53.6 16 0.00056 38.2 5.9 43 155-198 329-402 (433)
116 3h5q_A PYNP, pyrimidine-nucleo 51.9 18 0.0006 38.0 5.8 38 156-194 333-401 (436)
117 2xhc_A Transcription antitermi 51.8 7.8 0.00027 39.5 3.0 14 140-153 125-138 (352)
118 2dsj_A Pyrimidine-nucleoside ( 51.1 16 0.00055 38.1 5.3 42 155-198 322-394 (423)
119 1qpo_A Quinolinate acid phosph 50.8 10 0.00035 37.4 3.6 24 134-157 71-94 (284)
120 1x1o_A Nicotinate-nucleotide p 48.6 10 0.00034 37.5 3.2 23 135-157 73-95 (286)
121 2b7n_A Probable nicotinate-nuc 48.3 12 0.00041 36.5 3.6 22 136-157 60-81 (273)
122 1zy8_K Pyruvate dehydrogenase 48.2 3.8 0.00013 39.3 0.0 29 166-195 14-42 (229)
123 3tqv_A Nicotinate-nucleotide p 48.1 10 0.00036 37.5 3.2 22 136-157 77-98 (287)
124 3l0g_A Nicotinate-nucleotide p 47.3 11 0.00038 37.5 3.2 23 135-157 85-107 (300)
125 1f3z_A EIIA-GLC, glucose-speci 46.5 11 0.00038 34.2 2.8 28 131-158 91-118 (161)
126 1o4u_A Type II quinolic acid p 45.9 9.3 0.00032 37.8 2.4 23 135-157 72-94 (285)
127 3gnn_A Nicotinate-nucleotide p 45.9 12 0.0004 37.3 3.2 23 135-157 87-109 (298)
128 3fmc_A Putative succinylglutam 45.2 16 0.00055 37.2 4.2 34 160-195 289-322 (368)
129 3paj_A Nicotinate-nucleotide p 44.6 13 0.00043 37.5 3.2 25 133-157 107-131 (320)
130 1qap_A Quinolinic acid phospho 44.4 13 0.00044 36.9 3.2 25 133-157 84-108 (296)
131 2tpt_A Thymidine phosphorylase 42.6 16 0.00056 38.2 3.8 43 155-198 334-407 (440)
132 1ax3_A Iiaglc, glucose permeas 41.0 10 0.00035 34.3 1.7 29 131-159 91-119 (162)
133 2jbm_A Nicotinate-nucleotide p 39.6 14 0.00048 36.6 2.6 22 136-157 73-94 (299)
134 3na6_A Succinylglutamate desuc 39.5 24 0.00081 35.3 4.3 36 159-196 255-290 (331)
135 1uou_A Thymidine phosphorylase 39.1 39 0.0013 35.7 6.0 43 155-198 366-437 (474)
136 3h5q_A PYNP, pyrimidine-nucleo 36.6 19 0.00065 37.7 3.2 32 129-160 374-405 (436)
137 3d4r_A Domain of unknown funct 36.4 36 0.0012 31.0 4.5 44 145-200 95-138 (169)
138 3it5_A Protease LASA; metallop 35.9 15 0.0005 33.8 1.9 20 137-156 84-103 (182)
139 1brw_A PYNP, protein (pyrimidi 33.8 28 0.00095 36.4 3.8 30 130-159 372-401 (433)
140 2dsj_A Pyrimidine-nucleoside ( 33.4 28 0.00096 36.3 3.8 30 130-159 364-393 (423)
141 1uou_A Thymidine phosphorylase 32.0 30 0.001 36.6 3.8 27 133-159 410-436 (474)
142 3cdx_A Succinylglutamatedesucc 31.6 43 0.0015 33.6 4.8 37 158-196 264-300 (354)
143 1zko_A Glycine cleavage system 31.5 68 0.0023 28.0 5.5 31 164-195 39-70 (136)
144 3vr4_A V-type sodium ATPase ca 29.7 54 0.0018 35.6 5.3 53 139-195 130-185 (600)
145 1hpc_A H protein of the glycin 29.2 50 0.0017 28.7 4.1 31 164-195 30-61 (131)
146 3it5_A Protease LASA; metallop 28.6 59 0.002 29.7 4.7 63 118-195 34-104 (182)
147 3tuf_B Stage II sporulation pr 27.2 27 0.00092 33.7 2.2 26 133-158 130-155 (245)
148 2hsi_A Putative peptidase M23; 26.7 29 0.00098 34.1 2.3 22 175-197 232-253 (282)
149 3c2e_A Nicotinate-nucleotide p 26.4 26 0.0009 34.5 2.0 22 136-157 69-96 (294)
150 1qwy_A Peptidoglycan hydrolase 25.9 30 0.001 34.2 2.3 22 175-197 239-260 (291)
151 2tpt_A Thymidine phosphorylase 25.2 29 0.00099 36.4 2.1 30 130-159 377-406 (440)
152 3twe_A Alpha4H; unknown functi 24.9 63 0.0022 19.9 2.7 19 432-450 9-27 (27)
153 3mfy_A V-type ATP synthase alp 23.9 1E+02 0.0036 33.3 6.2 53 139-194 123-178 (588)
154 4etm_A LMPTP, low molecular we 23.9 39 0.0013 30.5 2.5 32 257-292 68-99 (173)
155 3nyy_A Putative glycyl-glycine 22.6 37 0.0013 32.8 2.2 20 176-196 183-202 (252)
156 2qj8_A MLR6093 protein; struct 21.6 77 0.0026 31.3 4.4 33 161-195 257-289 (332)
157 3tuf_B Stage II sporulation pr 20.0 79 0.0027 30.3 4.0 69 118-196 83-155 (245)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=2.7e-81 Score=662.57 Aligned_cols=367 Identities=32% Similarity=0.506 Sum_probs=40.0
Q ss_pred ceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++|++|.+++
T Consensus 2 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 2 AFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT-VATVGQTLITLDAPG 80 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCC-EeCCCCEEEEEecCC
Confidence 3689999999999999999999999999999999999999999999999999999999999997 999999999987655
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC-CCCCCCCCCCccccChhhhhhHHHcCCCCCccc
Q 010942 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKA-SKPSAASPEDRLFASPVARNLAEEHNVSLSSIK 276 (497)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~V~ 276 (497)
++....... +. .. ++.+ +.+... + ...+...+.+.. ........+.++++||+||+||+|+||||+.|+
T Consensus 81 ~~~~~~~~~-~~-~~---~~~~--~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~ 150 (428)
T 3dva_I 81 YENMTFKGQ-EQ-EE---AKKE--EKTETV-S--KEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQ 150 (428)
T ss_dssp ---------------------------------------------------------CCCCCHHHHHHHHHTTCCGGGSC
T ss_pred ccccccccc-cc-cc---cccC--CCcccC-C--ccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCC
Confidence 443211100 00 00 0000 000000 0 000000000000 000111123478999999999999999999999
Q ss_pred ccCCCCccchhhHHHHHHhcCCCCCCCC-------CCCCCCCCCCCCcccccchhhhHHHHHhhhhccCCccEEEEeeec
Q 010942 277 GTGPNGLIVKADIEDYLASRGKEVPAKA-------PKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDI 349 (497)
Q Consensus 277 GTG~~GrItk~DV~~~l~~~~~~~~a~~-------~a~~~~~~~~~~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~i 349 (497)
|||++|||+++||++|++......++.. +...........++++|+++|||+||++|.+||+++||||++.++
T Consensus 151 gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~ev 230 (428)
T 3dva_I 151 GTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEA 230 (428)
T ss_dssp CCSTTSCCCTTTTTTTSCC-------------------------------------------------------------
T ss_pred CCCCCCceeHHHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEE
Confidence 9999999999999999754321111100 000000011123567899999999999999999999999999999
Q ss_pred chHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcccccc--CcEEEcCCcceEEEeecCCCeEeeeecC
Q 010942 350 CVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVAVQTENGLYVPVIRD 427 (497)
Q Consensus 350 dvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~--~~i~~~~~vnIgiAV~t~~GL~vPVI~~ 427 (497)
|+|+|+++|+++|...+ ..|.|+||++||+||+++||++||+||++|++ +.|++|+++|||+||++++||++|||+|
T Consensus 231 Dvt~l~~~rk~~~~~~~-~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~ 309 (428)
T 3dva_I 231 DVTKLVAHRKKFKAIAA-EKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKH 309 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eHHHHHHHHHHhhhhHh-hcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeecc
Confidence 99999999999986544 35889999999999999999999999999988 7999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCCCceEEEEeccceecC
Q 010942 428 ADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 428 a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInppq~aILgvG~i~~r~ 497 (497)
+++++|.+|++++++|++++|+|+|+++||+||||||||+|+ ||+++|||||||||+||||+|++++||
T Consensus 310 a~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~-~G~~~ftpIin~pq~aIl~vG~i~~~p 378 (428)
T 3dva_I 310 ADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGS-AGGQWFTPVINHPEVAILGIGRIAEKP 378 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCC-CCccceEeecCCCCceEEEccccEEEE
Confidence 999999999999999999999999999999999999999999 999999999999999999999999875
No 2
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-49 Score=392.38 Aligned_cols=181 Identities=39% Similarity=0.590 Sum_probs=174.8
Q ss_pred CcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcc
Q 010942 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (497)
Q Consensus 316 ~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa 395 (497)
.++++|++++||+||++|.+||+++||||++.++|+|+|+++|+++|+.+.+..|.|+|+++|++||+++||++||++|+
T Consensus 17 ~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na 96 (256)
T 3mae_A 17 GDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNS 96 (256)
T ss_dssp SCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTSE
T ss_pred CceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhhh
Confidence 46789999999999999999999999999999999999999999999766555689999999999999999999999999
Q ss_pred ccccCcEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcce
Q 010942 396 SWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQ 475 (497)
Q Consensus 396 ~~~~~~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ 475 (497)
+|+++.|+++++||||+||++++||+||||+|++++||.||++++++|++++|+|+|+++||+||||||||+|+ ||+++
T Consensus 97 ~~~~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~-~G~~~ 175 (256)
T 3mae_A 97 TWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGS-FGSVQ 175 (256)
T ss_dssp EEETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGG-GTCSE
T ss_pred EEecCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCC-CCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred eeeccCCCceEEEEeccceecC
Q 010942 476 FCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 476 ftPIInppq~aILgvG~i~~r~ 497 (497)
|+|||||||+||||+|++++||
T Consensus 176 ftpIInppq~aIL~vG~i~~~p 197 (256)
T 3mae_A 176 SMGIINHPQAAILQVESIVKRP 197 (256)
T ss_dssp EECCCCTTSSEEEEEEEEEEEE
T ss_pred eEcccCCCCceEEEecccEEEE
Confidence 9999999999999999999875
No 3
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=1e-48 Score=383.28 Aligned_cols=180 Identities=33% Similarity=0.505 Sum_probs=173.2
Q ss_pred cccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccc
Q 010942 317 YVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396 (497)
Q Consensus 317 ~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~ 396 (497)
.+++|++++||+||++|.+||+++||||++.++|+|+|+++|+++|+.+....|.++|+++|++||+++||++||++|++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 34679999999999999999999999999999999999999999997655556899999999999999999999999999
Q ss_pred cccCcEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCccee
Q 010942 397 WADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQF 476 (497)
Q Consensus 397 ~~~~~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~f 476 (497)
|+++.+++++++|||+||++++||++|||+||+++|+.+|++++++|++++|+|+|+++||+||||||||+|+ ||+.+|
T Consensus 84 ~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~-~G~~~~ 162 (233)
T 1scz_A 84 IDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGV-FGSLMS 162 (233)
T ss_dssp EETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGG-GTCCCC
T ss_pred EeCCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCC-CCccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eeccCCCceEEEEeccceecC
Q 010942 477 CAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 477 tPIInppq~aILgvG~i~~r~ 497 (497)
+|||||||+||||+|++++||
T Consensus 163 tpIin~pq~aIl~vG~~~~~p 183 (233)
T 1scz_A 163 TPIINPPQSAILGMHAIKDRP 183 (233)
T ss_dssp CCCCCTTCSEEEEEEEEEEEE
T ss_pred EcccCCCCcEEEEccccEEEE
Confidence 999999999999999999875
No 4
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=7.6e-48 Score=375.07 Aligned_cols=176 Identities=26% Similarity=0.409 Sum_probs=169.6
Q ss_pred CcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcc
Q 010942 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (497)
Q Consensus 316 ~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa 395 (497)
..+++|++++||+||++|.+||+++||||++.++|+|+|+++|+++|+. |.|+|+++|++||+++||++||++|+
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~-----g~kls~~~~~ikA~~~Al~~~P~~N~ 79 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR-----NRKVTVTGFLARIVPSILKQYPYLNA 79 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT-----TCCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHHHhCHHhhe
Confidence 3467899999999999999999999999999999999999999999852 78999999999999999999999999
Q ss_pred ccccC--cEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCc
Q 010942 396 SWADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGI 473 (497)
Q Consensus 396 ~~~~~--~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~ 473 (497)
+|+++ .+++++++|||+||++++||+||||+|++++|+.+|++++++|++++|+|+|+++||+||||||||+|+ ||+
T Consensus 80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~-~G~ 158 (224)
T 3rqc_A 80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGT-IGG 158 (224)
T ss_dssp BCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTT-TCC
T ss_pred EEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCc-CCc
Confidence 99987 999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ceeeeccCCCceEEEEeccceecC
Q 010942 474 KQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 474 ~~ftPIInppq~aILgvG~i~~r~ 497 (497)
.+|+|||||||+||||+|+++++|
T Consensus 159 ~~~tpiin~pq~aIl~vG~~~~~p 182 (224)
T 3rqc_A 159 IMSTPIINYPEVAILGVHRILERE 182 (224)
T ss_dssp SEEECCCCTTBSEEEEECCCEEET
T ss_pred cceEeccCCCCceEEEecccEEEC
Confidence 999999999999999999999986
No 5
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=5.7e-48 Score=381.23 Aligned_cols=171 Identities=30% Similarity=0.525 Sum_probs=165.9
Q ss_pred cchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcccccc-
Q 010942 321 PHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD- 399 (497)
Q Consensus 321 pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~- 399 (497)
|+++|||+||++|.+||+++||||++.++|+|+|+++|+++|+ .|.|+|+++|++||+++||++||++|++|++
T Consensus 18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-----~~~kls~~~~iikAva~AL~~~P~~Na~~~~~ 92 (250)
T 3l60_A 18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVILNSTWVDS 92 (250)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGGGSEEEECT
T ss_pred CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhEEEecc
Confidence 9999999999999999999999999999999999999999974 3789999999999999999999999999975
Q ss_pred ---CcEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCccee
Q 010942 400 ---EYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQF 476 (497)
Q Consensus 400 ---~~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~f 476 (497)
+.|++++++||||||++++||+||||+|++++||.+|++++++|++++|+|+|+++||+||||||||+|+ ||+++|
T Consensus 93 ~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~-~G~~~f 171 (250)
T 3l60_A 93 GEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGA-LGVDDG 171 (250)
T ss_dssp TTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGG-GTCSSC
T ss_pred CCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCC-CCccee
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eeccCCCceEEEEeccceecC
Q 010942 477 CAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 477 tPIInppq~aILgvG~i~~r~ 497 (497)
||||||||+||||+|++++||
T Consensus 172 tpIinppq~aIL~vG~i~~~p 192 (250)
T 3l60_A 172 VPVINHPEAAILGLGAIKPRP 192 (250)
T ss_dssp CCCCCTTCSEEEEECCCEEEE
T ss_pred EeeeCCCCceEEEecceEEEe
Confidence 999999999999999999875
No 6
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=2.4e-47 Score=375.73 Aligned_cols=179 Identities=34% Similarity=0.496 Sum_probs=171.5
Q ss_pred cccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccc
Q 010942 317 YVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396 (497)
Q Consensus 317 ~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~ 396 (497)
++++|++++||+||++|.+||+++||||++.++|+|+|+++|+++|+..+. .|.++|+++|++||+++||++||++|++
T Consensus 15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~-~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEK-AGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHH-TTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhh-ccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 467899999999999999999999999999999999999999999875443 5889999999999999999999999999
Q ss_pred cccC--cEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcc
Q 010942 397 WADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIK 474 (497)
Q Consensus 397 ~~~~--~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~ 474 (497)
|+++ .+++++++|||+||++++||++|||+|+|++|+.+|++++++|++++|+|+|+++||+||||||||+|+ +|++
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~-~g~~ 172 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGH-IGGT 172 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTT-TCCS
T ss_pred EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCC-CCcc
Confidence 9864 899999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eeeeccCCCceEEEEeccceecC
Q 010942 475 QFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 475 ~ftPIInppq~aILgvG~i~~r~ 497 (497)
+|+|||||||+||||+|++++||
T Consensus 173 ~~tpIin~pq~aIl~vG~~~~~p 195 (243)
T 1dpb_A 173 AFTPIVNAPEVAILGVSKASMQP 195 (243)
T ss_dssp CCCCCCCTTSSEEEEECCCEEEE
T ss_pred ceECccCCCCCeEEEccccEEEE
Confidence 99999999999999999999875
No 7
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-47 Score=373.54 Aligned_cols=180 Identities=52% Similarity=0.847 Sum_probs=172.2
Q ss_pred CCcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCc
Q 010942 315 LDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCN 394 (497)
Q Consensus 315 ~~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lN 394 (497)
..++++|++++||+||++|.+||+++||||++.++|+|+|+++|+++|+..+. +.++|+++|++||+++||++||++|
T Consensus 10 ~~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~--~~kls~~~~~ikAv~~Al~~~P~~N 87 (239)
T 3b8k_A 10 GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFIIKASALACLKVPEAN 87 (239)
T ss_dssp CSCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT--SSCCCHHHHHHHHHHHHHHHCCCSC
T ss_pred CCceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc--cCCCCHHHHHHHHHHHHHHhChHhh
Confidence 35678899999999999999999999999999999999999999999875432 3599999999999999999999999
Q ss_pred cccccCcEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcc
Q 010942 395 SSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIK 474 (497)
Q Consensus 395 a~~~~~~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~ 474 (497)
++|+++.+++++++|||+||++++||++|||+|++++|+.+|++++++|++++|+|+|+++||+||||||||+|+ +|++
T Consensus 88 a~~~~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~-~g~~ 166 (239)
T 3b8k_A 88 SSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGM-FGIK 166 (239)
T ss_dssp TTSCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCS-SCCS
T ss_pred EEEECCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCC-CCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eeeeccCCCceEEEEeccceecC
Q 010942 475 QFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 475 ~ftPIInppq~aILgvG~i~~r~ 497 (497)
+|+|||||||+||||+|++++||
T Consensus 167 ~ftpiin~pq~aIl~vG~~~~~p 189 (239)
T 3b8k_A 167 NFSAIINPPQACILAIGASEDKL 189 (239)
T ss_dssp SCCCCCCTTSCCCCEECCCCCSC
T ss_pred eEECcCCCCceEEEECcccEEEE
Confidence 99999999999999999999976
No 8
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=9.7e-47 Score=375.03 Aligned_cols=179 Identities=28% Similarity=0.413 Sum_probs=169.8
Q ss_pred CcccccchhhhHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCcc
Q 010942 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (497)
Q Consensus 316 ~~~~~pls~iRkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa 395 (497)
.++++|+++|||+||++|.+|+ ++||||++.++|+|+|+++|+++|+..+ ..|.++|+++|++||+++||++||++|+
T Consensus 30 ~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~~~-~~g~kls~~~~~ikAva~Al~~~P~~Na 107 (262)
T 2ii3_A 30 KDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIAF-ARGIKLSFMPFFLKAASLGLLQFPILNA 107 (262)
T ss_dssp CCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHHHHHHHCGGGSE
T ss_pred CcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhhhh-hccCCccHHHHHHHHHHHHHHhChHhhE
Confidence 3567899999999999999996 6999999999999999999999987433 3588999999999999999999999999
Q ss_pred ccccC--cEEEcCCcceEEEeecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCc
Q 010942 396 SWADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGI 473 (497)
Q Consensus 396 ~~~~~--~i~~~~~vnIgiAV~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~ 473 (497)
+|+++ .|++++++||||||++++||++|||+||+++||.+|++++++|++++|+|+|+++||+||||||||+|+ ||+
T Consensus 108 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~-~G~ 186 (262)
T 2ii3_A 108 SVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGS-IGG 186 (262)
T ss_dssp EECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGG-TCC
T ss_pred EEeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCC-CCc
Confidence 99864 899999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ceeeeccCCCceEEEEeccceecC
Q 010942 474 KQFCAIINPPQSGILAVGSGKDQL 497 (497)
Q Consensus 474 ~~ftPIInppq~aILgvG~i~~r~ 497 (497)
++|+|||||||+||||+|++++||
T Consensus 187 ~~~tPIinppq~aIL~vG~~~~~p 210 (262)
T 2ii3_A 187 TYAKPVILPPEVAIGALGTIKALP 210 (262)
T ss_dssp SCEECCCCTTCCEEEEECCCEEEE
T ss_pred cceECccCCCcceEEEcCccEEEE
Confidence 999999999999999999999875
No 9
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.1e-37 Score=355.96 Aligned_cols=164 Identities=21% Similarity=0.290 Sum_probs=134.2
Q ss_pred hhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccC----cEEEcCC
Q 010942 332 RLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE----YIRQFKN 407 (497)
Q Consensus 332 ~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~----~i~~~~~ 407 (497)
+|.+|+ ++||+|++.++|+|+|+++|+++|+.+....|.|+|+++||+||+++||++||++|++|+++ .|+++++
T Consensus 1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~ 79 (1113)
T 2xt6_A 1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH 79 (1113)
T ss_dssp -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence 578885 89999999999999999999999976665568999999999999999999999999999854 6999999
Q ss_pred cceEEEeecC--CC---eEeeeecCcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCcEEEecCCcccCcceeeeccCC
Q 010942 408 VNINVAVQTE--NG---LYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYEGGTFTVTNLGGPFGIKQFCAIINP 482 (497)
Q Consensus 408 vnIgiAV~t~--~G---L~vPVI~~a~~~sl~eIa~ei~~l~~kar~g~L~~~d~~ggTfTISNlG~~~G~~~ftPIInp 482 (497)
|||||||+++ +| |+|||||||+++||.+|++++++|++|||+|+|+++||+||||||||+|+ ||+.+|+|||||
T Consensus 80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~-~G~~~~tPIinp 158 (1113)
T 2xt6_A 80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGT-LGTVHSVPRLMQ 158 (1113)
T ss_dssp CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC-------------CT
T ss_pred ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCc-CCCcceECCCCC
Confidence 9999999997 66 99999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CceEEEEeccceecC
Q 010942 483 PQSGILAVGSGKDQL 497 (497)
Q Consensus 483 pq~aILgvG~i~~r~ 497 (497)
||+||||+|+++++|
T Consensus 159 pq~aIL~vG~i~~~p 173 (1113)
T 2xt6_A 159 GQGAIIGAGAMEYPA 173 (1113)
T ss_dssp TCSEEEEECCCBCCT
T ss_pred CCceEEEcCccEEEe
Confidence 999999999999875
No 10
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=99.98 E-value=7.2e-32 Score=261.65 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=135.1
Q ss_pred hHHHHHhhhhccCCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEc
Q 010942 326 RKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQF 405 (497)
Q Consensus 326 Rkaia~~m~~S~~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~ 405 (497)
||.--... ...++||+|++.++|+|+|+++|++ .++|+++|++||+++||++||++|++|+++.|+++
T Consensus 18 R~~~f~~f--~~~~~P~~t~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~ 85 (219)
T 1q23_A 18 RKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIW 85 (219)
T ss_dssp THHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEE
T ss_pred CHHHHHHh--cCCCCcEEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEe
Confidence 44444333 3478999999999999999999864 26999999999999999999999999999999999
Q ss_pred CCcceEEEe-ecCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcC-CCCC-CCCCCCcEEEecCCcccCcceeeeccCC
Q 010942 406 KNVNINVAV-QTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKP-QDYEGGTFTVTNLGGPFGIKQFCAIINP 482 (497)
Q Consensus 406 ~~vnIgiAV-~t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g-~L~~-~d~~ggTfTISNlG~~~G~~~ftPIInp 482 (497)
++||||+|| ++++||++|||.. ..+++.+|++++++|+++||+| +|++ +|+ ||||||||+|+ +| ||||+|+
T Consensus 86 ~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~-~~---ft~i~~~ 159 (219)
T 1q23_A 86 DSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPW-VS---FTSFDLN 159 (219)
T ss_dssp SCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTT-CC---CSEEEEE
T ss_pred cccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCcc-cc---ccccccC
Confidence 999999999 9999999999997 5689999999999999999998 6976 899 99999999998 75 5666666
Q ss_pred Cc------eEEEEeccceec
Q 010942 483 PQ------SGILAVGSGKDQ 496 (497)
Q Consensus 483 pq------~aILgvG~i~~r 496 (497)
|+ ++||++|+++++
T Consensus 160 ~~~~~~~~~pIi~~G~~~~~ 179 (219)
T 1q23_A 160 VANMDNFFAPVFTMGKYYTQ 179 (219)
T ss_dssp ESCCTTCCSCEEEECCCEEE
T ss_pred CCCCccceeEEEecccEEEE
Confidence 65 599999999874
No 11
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=99.97 E-value=2e-31 Score=257.50 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=131.3
Q ss_pred CCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccccCcEEEcCCcceEEEe-ec
Q 010942 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAV-QT 416 (497)
Q Consensus 338 ~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIgiAV-~t 416 (497)
.++||+|++.++|+|+|+++|++ .++|+++|++||+++||++||++|++|+++.|++++++|||+|| ++
T Consensus 23 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t 92 (213)
T 3cla_A 23 RLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ 92 (213)
T ss_dssp TSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred CCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeC
Confidence 68999999999999999999853 36999999999999999999999999999999999999999999 99
Q ss_pred CCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhcC-CCCC-CCCCCCcEEEecCCcccCcceeeeccCCC---ceEEEEec
Q 010942 417 ENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKP-QDYEGGTFTVTNLGGPFGIKQFCAIINPP---QSGILAVG 491 (497)
Q Consensus 417 ~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~g-~L~~-~d~~ggTfTISNlG~~~G~~~ftPIInpp---q~aILgvG 491 (497)
++||++|||++ +.+++.+|++++++++++||+| +|++ +||+||||||||+|+ ++.+.|+..++++ ..+|+++|
T Consensus 93 ~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~-~~ft~i~~~~~~g~~~~~PIi~~G 170 (213)
T 3cla_A 93 ETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPW-VNFDSFNLNVANFTDYFAPIITMA 170 (213)
T ss_dssp TTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETT-CCCSCCCCCCSCCTTCCSCEEEEE
T ss_pred CCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCC-CCcccccccCCCCCcccccEEEee
Confidence 99999999987 5699999999999999999996 9988 899999999999998 7765554333333 24899999
Q ss_pred cceec
Q 010942 492 SGKDQ 496 (497)
Q Consensus 492 ~i~~r 496 (497)
+++++
T Consensus 171 ~~~~~ 175 (213)
T 3cla_A 171 KYQQE 175 (213)
T ss_dssp CCEEE
T ss_pred EEEEE
Confidence 99764
No 12
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=5.2e-30 Score=248.26 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=132.2
Q ss_pred CCccEEEEeeecchHHHHHHHHHHhHHHHHhcCCcccHHHHHHHHHHHHHhhCCCCccccc-cCcEEEcCCcceEEEe-e
Q 010942 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWA-DEYIRQFKNVNINVAV-Q 415 (497)
Q Consensus 338 ~~iP~~tl~~~idvt~L~~lR~~l~~~~~~~~g~klTi~~~liKAva~AL~~~P~lNa~~~-~~~i~~~~~vnIgiAV-~ 415 (497)
.++||+|++.++|+|+|+++|++. ++|+++|++||+++||++||++|++|+ ++.|++++++|||+|| +
T Consensus 25 ~~~P~~~~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~ 94 (217)
T 2i9d_A 25 FQNPQLSITSEVECGGARQRAKAA----------GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI 94 (217)
T ss_dssp CSBCEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred CCCceEEEEEEEEhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence 789999999999999999998642 699999999999999999999999999 8899999999999999 9
Q ss_pred cCCCeEeeeecCcCCCCHHHHHHHHHHHHHHHhc-CCCCCC------CCCCCcEEEecCCcccCcceeeeccCCC---ce
Q 010942 416 TENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKD-NSLKPQ------DYEGGTFTVTNLGGPFGIKQFCAIINPP---QS 485 (497)
Q Consensus 416 t~~GL~vPVI~~a~~~sl~eIa~ei~~l~~kar~-g~L~~~------d~~ggTfTISNlG~~~G~~~ftPIInpp---q~ 485 (497)
+++||++||+.. ..+++.+|++++++|+++||+ |+|+++ ||+||||||||+|+ ++.+.|+..++++ ..
T Consensus 95 t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~-~~ft~i~~~~~~g~~~~~ 172 (217)
T 2i9d_A 95 KENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPD-LYFTSITGTQEKRSGNNY 172 (217)
T ss_dssp STTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTT-CCCSEECCCBCSTTCCSS
T ss_pred cCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCc-cccceeecCCCCCccceE
Confidence 999999999974 568999999999999999999 599995 99999999999998 8866665555444 35
Q ss_pred EEEEeccceec
Q 010942 486 GILAVGSGKDQ 496 (497)
Q Consensus 486 aILgvG~i~~r 496 (497)
+||++|+++++
T Consensus 173 PIi~~Gk~~~~ 183 (217)
T 2i9d_A 173 PLLNAGKAIIR 183 (217)
T ss_dssp CEEEECCCEEE
T ss_pred EEEecceEEEE
Confidence 89999999764
No 13
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.96 E-value=3.1e-31 Score=258.50 Aligned_cols=166 Identities=42% Similarity=0.644 Sum_probs=38.7
Q ss_pred ceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCee-ecCCCEEEEEecc
Q 010942 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKE-IKVGEVIAITVEE 196 (497)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~-v~vG~~l~~i~~~ 196 (497)
.++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ . |.+|++|++|.++
T Consensus 3 ~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~-~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 3 PIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS-KNIRLGSLIGLIVEE 81 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCC-eeecCCCEEEEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999997 6 9999999988654
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhhhhhHHHcCCCCCccc
Q 010942 197 EEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIK 276 (497)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~ARklA~e~gIDLs~V~ 276 (497)
+++..... .+..... +... ..+.. +.....+. .+.+.. ........++++||+|||||+|+||||+.|+
T Consensus 82 ~~~~~~~~--~~~~~~~---~~~~-~~~~~--~~~~~~~~-~~~~~~--~~~~~~~~~~~asP~vRklAre~gVDL~~V~ 150 (229)
T 1zy8_K 82 GEDWKHVE--IPKDVGP---PPPV-SKPSE--PRPSPEPQ-ISIPVK--KEHIPGTLRFRLSPAARNILEKHSLDASQGT 150 (229)
T ss_dssp -----------------------------------------------------------CBCHHHHHHHHHTTCCSSSSC
T ss_pred Cccccccc--ccccccc---cccc-ccCCC--cccccccc-cCCCcc--cccccccccccCChHHHHHHHHcCCCccccC
Confidence 43221100 0000000 0000 00000 00000000 000000 0000112367899999999999999999999
Q ss_pred ccCCCCccchhhHHHHHHh
Q 010942 277 GTGPNGLIVKADIEDYLAS 295 (497)
Q Consensus 277 GTG~~GrItk~DV~~~l~~ 295 (497)
|||++|||+++||++|++.
T Consensus 151 GTGp~GRItk~DV~~~~~~ 169 (229)
T 1zy8_K 151 ATGPRGIFTKEDALKLVQL 169 (229)
T ss_dssp CCSTTSCBCHHHHHHHHHH
T ss_pred CCCCCCceehHHHHHHHhh
Confidence 9999999999999999864
No 14
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.82 E-value=8.4e-20 Score=162.72 Aligned_cols=99 Identities=46% Similarity=0.823 Sum_probs=83.1
Q ss_pred cccccccCCCCCCceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeee
Q 010942 105 LKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEI 184 (497)
Q Consensus 105 ~~r~f~~~~~~~~~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v 184 (497)
.+|.|.....+|+.++|.||++|++|++|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|++.|
T Consensus 14 ~~~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V 93 (128)
T 1y8o_B 14 LENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDV 93 (128)
T ss_dssp ---------CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSE
T ss_pred hccccCccccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeee
Confidence 46788888889999999999999999999999999999999999999999999999999999999999999999994269
Q ss_pred cCCCEEEEEeccCCccccc
Q 010942 185 KVGEVIAITVEEEEDIPKF 203 (497)
Q Consensus 185 ~vG~~l~~i~~~~~~~~~~ 203 (497)
.+|++|+++.+.++++..+
T Consensus 94 ~~G~~L~~i~~~~~~~~~~ 112 (128)
T 1y8o_B 94 PLGTPLCIIVEKEADISAF 112 (128)
T ss_dssp ETTCEEEEEESSGGGGGGG
T ss_pred cCCCEEEEEecCccchhhh
Confidence 9999999997766555443
No 15
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=155.01 Aligned_cols=91 Identities=53% Similarity=0.874 Sum_probs=82.8
Q ss_pred CCCCceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 114 GLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 114 ~~~~~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.+|++++|.||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|++.|.+|++|+++
T Consensus 3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i 82 (108)
T 2dne_A 3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICIT 82 (108)
T ss_dssp CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEE
T ss_pred CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999994259999999999
Q ss_pred eccCCcccccc
Q 010942 194 VEEEEDIPKFK 204 (497)
Q Consensus 194 ~~~~~~~~~~~ 204 (497)
.+.++++..+.
T Consensus 83 ~~~~~~~~~~~ 93 (108)
T 2dne_A 83 VGKPEDIEAFK 93 (108)
T ss_dssp ESCHHHHHHHH
T ss_pred ecCccchhhhh
Confidence 77665554443
No 16
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.76 E-value=3.3e-18 Score=142.09 Aligned_cols=83 Identities=48% Similarity=0.877 Sum_probs=77.6
Q ss_pred CCCceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 115 LPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 115 ~~~~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
+|++++|.||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|++.|.+|++|+++.
T Consensus 2 ~~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~ 81 (87)
T 3crk_C 2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81 (87)
T ss_dssp CCCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEE
T ss_pred CCcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEE
Confidence 67789999999999999999999999999999999999999999999999999999999999999951599999999986
Q ss_pred ccC
Q 010942 195 EEE 197 (497)
Q Consensus 195 ~~~ 197 (497)
+.+
T Consensus 82 ~~~ 84 (87)
T 3crk_C 82 EKE 84 (87)
T ss_dssp SSS
T ss_pred ccc
Confidence 544
No 17
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=144.32 Aligned_cols=83 Identities=55% Similarity=0.915 Sum_probs=77.4
Q ss_pred CCceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeee-cCCCEEEEEe
Q 010942 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEI-KVGEVIAITV 194 (497)
Q Consensus 116 ~~~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v-~vG~~l~~i~ 194 (497)
++.++|.||++|++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .| .+|++|+++.
T Consensus 5 ~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~-~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS-KNIRLGSLIGLIV 83 (98)
T ss_dssp CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTC-CCEESSCEEEEEE
T ss_pred cccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCC-EEcCCCCEEEEEe
Confidence 456799999999999999999999999999999999999999999999999999999999999998 88 9999999986
Q ss_pred ccCCc
Q 010942 195 EEEED 199 (497)
Q Consensus 195 ~~~~~ 199 (497)
..+++
T Consensus 84 ~~~~~ 88 (98)
T 2dnc_A 84 EEGED 88 (98)
T ss_dssp CTTSC
T ss_pred cCCCc
Confidence 55443
No 18
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.72 E-value=1.7e-17 Score=139.73 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=75.0
Q ss_pred CCceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 116 ~~~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.+.++|.||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|+++..
T Consensus 2 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~-~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDD-IAYVGKPLVDIET 80 (93)
T ss_dssp CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSC-EECTTSEEEEEEC
T ss_pred CcceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCC-EeCCCCEEEEEec
Confidence 345799999999999999999999999999999999999999999999999999999999999998 8999999998853
No 19
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.67 E-value=1.3e-16 Score=129.73 Aligned_cols=75 Identities=31% Similarity=0.625 Sum_probs=72.6
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
+++.||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+ .|..|++|+.+.
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~ 76 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGD-TVLSGELLGKLT 76 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTC-EECTTCEEEEEC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcC-EECCCCEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999998 899999999874
No 20
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.62 E-value=3e-17 Score=134.07 Aligned_cols=75 Identities=29% Similarity=0.564 Sum_probs=72.2
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
.++.||++|+++.+|+|.+|++++||.|++||+|++||+||+..+|+||++|+|.++++++|+ .|.+|++|+.+.
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~G~~l~~i~ 77 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT-TVTSRQILGRLR 77 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTC-EECSSSEEEBCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcC-EECCCCEEEEEe
Confidence 579999999999999999999999999999999999999999999999999999999999998 899999998763
No 21
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.61 E-value=1.4e-15 Score=123.70 Aligned_cols=75 Identities=29% Similarity=0.438 Sum_probs=71.6
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
++|.||++|++ +|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++.+++|+ .|..|++|+.+...
T Consensus 3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~-~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEVE 77 (80)
T ss_dssp EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTC-EECTTCCCEEEESC
T ss_pred eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCC-EECCCCEEEEEEcc
Confidence 68999999997 99999999999999999999999999999999999999999999999998 99999999998543
No 22
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.61 E-value=1.2e-15 Score=123.27 Aligned_cols=75 Identities=35% Similarity=0.523 Sum_probs=72.3
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
++|.||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++.+++|+ .|..|++|+.+.
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQ-VVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTC-EECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcC-EECCCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999998 899999999873
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.57 E-value=9.1e-15 Score=118.76 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=69.5
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
++|.||++|++ + +|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++.+++|+ .|..|++|+.+..
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~-~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGD-KLKEGDAIIELEP 74 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTC-EEETTSEEEEEEC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCC-EECCCCEEEEEec
Confidence 47899999996 7 999999999999999999999999999999999999999999999998 8999999998854
No 24
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.54 E-value=3.4e-15 Score=121.75 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=71.8
Q ss_pred ceEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.++|.||++| ++.+|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++.+++|+ .|..|++|+.+..
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD-KISEGGLIVVVEA 77 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSC-EECSSSCCCEECC
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCC-EeCCCCEEEEEEe
Confidence 3588999999 68999999999999999999999999999999999999999999999999998 8999999998743
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.37 E-value=9e-14 Score=114.67 Aligned_cols=71 Identities=30% Similarity=0.451 Sum_probs=67.0
Q ss_pred eEEecCCCCCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
++|.+|.+ |+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++.+++|+ .|..|++|+.+...
T Consensus 3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~-~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEVE 73 (85)
T ss_dssp SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTC-CBCTTSEEEEEECC
T ss_pred cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCC-EECCCCEEEEEEcC
Confidence 47889988 8999999999999999999999999999999999999999999999998 99999999998653
No 26
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.30 E-value=3.4e-12 Score=105.14 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=60.9
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
..+|+|.+|++++||.|++||+|++||++|+.++|.||++|+|.++. ++|+ .|.+|++|+.+.+.
T Consensus 11 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~-~V~~G~~l~~i~~~ 75 (84)
T 2kcc_A 11 PSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGA-VLEAGCVVARLELD 75 (84)
T ss_dssp SSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTC-CCCTTCCCEEEECS
T ss_pred CCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCC-EECCCCEEEEEeCC
Confidence 45699999999999999999999999999999999999999999999 9997 89999999988543
No 27
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.30 E-value=8.9e-12 Score=98.71 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=60.9
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.+|+|.+|++++||.|++||+|+++|++|...+|.||.+|+|.++.+++|+ .|..|++|+.+.+
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~-~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGD-FVNEGDVLLELSN 69 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTC-EECTTCEEEEEGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCC-EECCCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999999998 8999999998843
No 28
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=109.20 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=29.3
Q ss_pred CCCceEEecCCCCCCC----ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEE
Q 010942 115 LPPHQEIGMPSLSPTM----QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (497)
Q Consensus 115 ~~~~~~i~mP~lg~~~----~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l 190 (497)
+....+|.+|...... ..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++.+++|+ .|..|++|
T Consensus 12 ~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~-~V~~G~~L 90 (94)
T 2jku_A 12 DLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGD-TVGEGDLL 90 (94)
T ss_dssp ------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC---------------------------------
T ss_pred cccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcC-EECCCCEE
Confidence 4445688999998765 689999999999999999999999999999999999999999999999997 89999999
Q ss_pred EEE
Q 010942 191 AIT 193 (497)
Q Consensus 191 ~~i 193 (497)
+.+
T Consensus 91 ~~i 93 (94)
T 2jku_A 91 VEL 93 (94)
T ss_dssp ---
T ss_pred EEE
Confidence 865
No 29
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.9e-11 Score=102.69 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=59.9
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.+|+|.+|++++||.|++||+|+++|++|+..+|+||.+|+|. +++++|+ .|..|++|+.+..
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~-~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGA-VLEAGCVVARLEL 86 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTC-EECSSCEEEEECC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCC-EECCCCEEEEEEc
Confidence 5699999999999999999999999999999999999999999 9999998 8999999998843
No 30
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=99.20 E-value=6.6e-12 Score=89.79 Aligned_cols=40 Identities=33% Similarity=0.646 Sum_probs=37.6
Q ss_pred cccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHH
Q 010942 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (497)
Q Consensus 255 v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~ 294 (497)
+++||+||++|+|+||||+.|+|||++|||+++||++|++
T Consensus 1 ~~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 40 (41)
T 2eq9_C 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41)
T ss_dssp CCBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred CCCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence 4689999999999999999999999999999999999863
No 31
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=99.19 E-value=6.4e-12 Score=96.66 Aligned_cols=43 Identities=44% Similarity=0.752 Sum_probs=39.4
Q ss_pred CccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHHh
Q 010942 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295 (497)
Q Consensus 253 ~~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~~ 295 (497)
.++.+||+||+||+|+||||+.|+|||++|||+++||++|++.
T Consensus 6 ~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~ 48 (58)
T 3rnm_E 6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 48 (58)
T ss_dssp --CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence 4788999999999999999999999999999999999999864
No 32
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.16 E-value=1.3e-10 Score=92.18 Aligned_cols=62 Identities=24% Similarity=0.398 Sum_probs=59.4
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|.+|++++||.|++||+|+++|++|...+|.||.+|+|.++.+++|+ .|..|++|+.+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~v~~g~~l~~i 73 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGE-AVDTGQPLIEL 73 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTC-EECTTCEEEEE
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcC-EECCCCEEEEE
Confidence 469999999999999999999999999999999999999999999999997 89999999876
No 33
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=99.13 E-value=2.3e-11 Score=86.53 Aligned_cols=37 Identities=38% Similarity=0.587 Sum_probs=35.9
Q ss_pred cChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHH
Q 010942 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 293 (497)
Q Consensus 257 aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l 293 (497)
+||+||++|+|+|||++.|+|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence 6999999999999999999999999999999999986
No 34
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.13 E-value=1.6e-10 Score=92.69 Aligned_cols=62 Identities=23% Similarity=0.400 Sum_probs=59.4
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|.|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++.+++|+ .|..|++|+.+
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~-~v~~G~~l~~i 76 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERD-AVQGGQGLIKI 76 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTC-BCCBTSEEEEE
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcC-EECCCCEEEEE
Confidence 468999999999999999999999999999999999999999999999997 89999999876
No 35
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.12 E-value=1.2e-10 Score=94.37 Aligned_cols=56 Identities=25% Similarity=0.430 Sum_probs=53.8
Q ss_pred EEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
+|++++||.|++||.|++||++|+..+|.||++|+|.++.+++|+ .|..|++|+.+
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~V~~G~~L~~i 79 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQ-PVEFDEPLVVI 79 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTC-EECTTCEEEEE
T ss_pred ccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCC-EECCCCEEEEE
Confidence 469999999999999999999999999999999999999999998 99999999876
No 36
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.11 E-value=1.2e-10 Score=98.70 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=61.9
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++.+++|+ .|..|++|+.+.+.+
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~-~V~~G~~L~~i~~~~ 86 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGA-QANRHTPLVEFEEEE 86 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTE-EECTTCBCEEECCCC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCC-EECCCCEEEEEECCC
Confidence 469999999999999999999999999999999999999999999999997 999999999886543
No 37
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=99.11 E-value=1.7e-11 Score=87.23 Aligned_cols=37 Identities=41% Similarity=0.587 Sum_probs=35.0
Q ss_pred cChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHH
Q 010942 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 293 (497)
Q Consensus 257 aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l 293 (497)
+||+||++|+++||||+.|+|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence 6999999999999999999999999999999999875
No 38
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=99.09 E-value=3.1e-11 Score=90.48 Aligned_cols=42 Identities=43% Similarity=0.613 Sum_probs=38.5
Q ss_pred CccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHH
Q 010942 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (497)
Q Consensus 253 ~~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~ 294 (497)
.++.+||.||++|+++||||+.|+|||++|||+++||+.|+.
T Consensus 8 ~~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~~ 49 (51)
T 1bal_A 8 NNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 49 (51)
T ss_dssp SSCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTSC
T ss_pred CCCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHhc
Confidence 356789999999999999999999999999999999998753
No 39
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=99.09 E-value=4e-11 Score=89.13 Aligned_cols=41 Identities=41% Similarity=0.741 Sum_probs=38.8
Q ss_pred ccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHH
Q 010942 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (497)
Q Consensus 254 ~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~ 294 (497)
++.+||+||++|+|+||||+.|+|||++|||+++||++|+.
T Consensus 6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~ 46 (49)
T 1w85_I 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46 (49)
T ss_dssp CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence 56789999999999999999999999999999999999974
No 40
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.04 E-value=2.8e-10 Score=126.69 Aligned_cols=62 Identities=27% Similarity=0.399 Sum_probs=59.9
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+.+
T Consensus 619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~-~v~~g~~l~~i 680 (681)
T 3n6r_A 619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGN-SLAVDDVIMEF 680 (681)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTC-EECTTCEEEEE
T ss_pred CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcC-EeCCCCEEEEE
Confidence 459999999999999999999999999999999999999999999999998 99999999986
No 41
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.03 E-value=3.2e-10 Score=133.21 Aligned_cols=61 Identities=21% Similarity=0.406 Sum_probs=59.3
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.+|++++|+ .|.+|++|++|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~-~V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGD-MVEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTC-EECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcC-EeCCCCEEEEe
Confidence 49999999999999999999999999999999999999999999999998 99999999987
No 42
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=98.99 E-value=2.1e-10 Score=89.41 Aligned_cols=43 Identities=42% Similarity=0.710 Sum_probs=40.1
Q ss_pred ccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHHhc
Q 010942 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASR 296 (497)
Q Consensus 254 ~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~~~ 296 (497)
++++||+||+||+++||||+.|+|||++|||+++||++|+...
T Consensus 4 ~~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~~ 46 (62)
T 1w4i_A 4 EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEET 46 (62)
T ss_dssp SSEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhcc
Confidence 4678999999999999999999999999999999999998743
No 43
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=98.99 E-value=1.3e-10 Score=91.18 Aligned_cols=43 Identities=35% Similarity=0.495 Sum_probs=39.9
Q ss_pred CccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHHh
Q 010942 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295 (497)
Q Consensus 253 ~~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~~ 295 (497)
.++.+||+||++|+++||||+.|+|||++|||+++||++|++.
T Consensus 8 ~~~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 50 (64)
T 2f60_K 8 LRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL 50 (64)
T ss_dssp HHHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999864
No 44
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=98.98 E-value=3.9e-10 Score=90.00 Aligned_cols=43 Identities=42% Similarity=0.739 Sum_probs=40.2
Q ss_pred ccccChhhhhhHHHcCCCCCcccccCCCCccchhhHHHHHHhc
Q 010942 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASR 296 (497)
Q Consensus 254 ~v~aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~l~~~ 296 (497)
++++||+||+||+|+||||+.|+|||++|||+++||++|+...
T Consensus 15 ~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~~ 57 (70)
T 2coo_A 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQ 57 (70)
T ss_dssp SCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhcc
Confidence 5678999999999999999999999999999999999998753
No 45
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.95 E-value=8.5e-10 Score=129.08 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=60.6
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+.|.
T Consensus 1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~-~V~~g~~l~~i~ 1146 (1150)
T 3hbl_A 1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD-TIATGDLLIEIE 1146 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTC-EECTTBEEEEEC
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCEEEEEe
Confidence 459999999999999999999999999999999999999999999999998 999999999884
No 46
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.95 E-value=7.9e-11 Score=131.00 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+++.
T Consensus 609 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~-~v~~g~~l~~i~ 671 (675)
T 3u9t_A 609 MNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGE-LVEEGTPLVELD 671 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcC-CcCCCCEEEEEe
Confidence 468999999999999999999999999999999999999999999999997 999999999884
No 47
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.69 E-value=1.7e-08 Score=87.20 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=60.1
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeee-----------------------------EEecCcceEEEEEeeCCCC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATV-----------------------------EMECMEEGYLAKIVKGDGS 181 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~-----------------------------ev~ap~~G~l~~i~~~~G~ 181 (497)
..|+|.+|+|++||.|++||+|+++++.++.. .|.||++|+|.++.+++|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 46999999999999999999999999986654 8999999999999999997
Q ss_pred eeecCC-CEEEEEeccC
Q 010942 182 KEIKVG-EVIAITVEEE 197 (497)
Q Consensus 182 ~~v~vG-~~l~~i~~~~ 197 (497)
.|..| ++|+.|.+.+
T Consensus 88 -~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 88 -YVSASTTELVRVTNLN 103 (116)
T ss_dssp -EECTTTSCCEEEECSC
T ss_pred -EEcCCCcEEEEEECCC
Confidence 99999 9999987654
No 48
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.66 E-value=7.1e-09 Score=115.61 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=59.3
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
.+|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++.+++|+ .|.+|++|+.+
T Consensus 656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i 717 (718)
T 3bg3_A 656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDM-TLEGDDLILEI 717 (718)
T ss_dssp SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEE-EECSSCEEECB
T ss_pred CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCC-EeCCCCEEEEe
Confidence 369999999999999999999999999999999999999999999999997 89999999865
No 49
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.64 E-value=4e-08 Score=88.14 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=56.4
Q ss_pred EecCCCCCCCceeEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEE---eeCCCCeeec---CCC-EEEE
Q 010942 121 IGMPSLSPTMQEGNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI---VKGDGSKEIK---VGE-VIAI 192 (497)
Q Consensus 121 i~mP~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i---~~~~G~~~v~---vG~-~l~~ 192 (497)
+.+|.+|+ |+.+.+ ++||.|++||+||+||++|++.+|.||.+|+|.++ ++++|+ .|. .|+ .|+.
T Consensus 39 ~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~-~Vn~dp~g~GwL~~ 111 (136)
T 1zko_A 39 HAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPE-LINKDPEGEGWLFK 111 (136)
T ss_dssp HHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTT-HHHHCTTTTTCCEE
T ss_pred hhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCcc-CcccCCCCCeEEEE
Confidence 44566654 344444 99999999999999999999999999999999999 888997 888 888 7877
Q ss_pred Ee
Q 010942 193 TV 194 (497)
Q Consensus 193 i~ 194 (497)
+.
T Consensus 112 i~ 113 (136)
T 1zko_A 112 ME 113 (136)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 50
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.61 E-value=1.9e-08 Score=117.91 Aligned_cols=62 Identities=24% Similarity=0.471 Sum_probs=53.6
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++.+++|+ .|.+|++|+.+
T Consensus 1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i 1163 (1165)
T 2qf7_A 1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGD-QIDAKDLLAVY 1163 (1165)
T ss_dssp SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSC-EECTTBEEEEC
T ss_pred CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 459999999999999999999999999999999999999999999999998 89999999876
No 51
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.24 E-value=5.8e-07 Score=80.11 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=41.3
Q ss_pred EEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCC
Q 010942 134 NIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (497)
Q Consensus 134 ~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G 180 (497)
.|+.+.+ ++||.|++||+||+||++|++.+|.||.+|+|.++..+.+
T Consensus 37 ~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~ 84 (131)
T 1hpc_A 37 EVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLT 84 (131)
T ss_dssp SEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHH
T ss_pred CceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhh
Confidence 3555555 9999999999999999999999999999999999975544
No 52
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.23 E-value=1.2e-06 Score=77.62 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=44.9
Q ss_pred EEecCCCCCCCceeEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCC
Q 010942 120 EIGMPSLSPTMQEGNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (497)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G 180 (497)
++.+|.+|+ |+...+ ++||.|++||+||+||++|++.+|.||.+|+|.++..+.+
T Consensus 30 d~a~~~lG~------i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~ 85 (128)
T 3a7l_A 30 EHAQELLGD------MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALS 85 (128)
T ss_dssp HHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGG
T ss_pred hHHhccCCc------eEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhc
Confidence 344555554 444444 9999999999999999999999999999999999976544
No 53
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.18 E-value=1.8e-06 Score=76.60 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=50.2
Q ss_pred EecCCCCCCCceeEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeC---CCCeee---cCCC-EEEE
Q 010942 121 IGMPSLSPTMQEGNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG---DGSKEI---KVGE-VIAI 192 (497)
Q Consensus 121 i~mP~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~---~G~~~v---~vG~-~l~~ 192 (497)
+.+|.+|+ |+...+ ++||.|++||+||+||++|+..+|.||.+|+|.++..+ ..+ .| +-|+ -|+.
T Consensus 30 ~a~~~lG~------i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~-lvn~dpy~~gWl~~ 102 (128)
T 1onl_A 30 YAQDALGD------VVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPE-LVNQDPYGEGWIFR 102 (128)
T ss_dssp HHHHHHCS------EEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTT-HHHHCTTTTTCCEE
T ss_pred HHhhcCCC------ceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChh-hhccCCCCCccEEE
Confidence 34555554 444444 99999999999999999999999999999999999654 333 34 5565 5655
Q ss_pred E
Q 010942 193 T 193 (497)
Q Consensus 193 i 193 (497)
+
T Consensus 103 i 103 (128)
T 1onl_A 103 L 103 (128)
T ss_dssp E
T ss_pred E
Confidence 5
No 54
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.67 E-value=6.3e-05 Score=66.33 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=41.9
Q ss_pred eEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCC
Q 010942 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179 (497)
Q Consensus 133 g~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~ 179 (497)
|.|+.+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++...-
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l 79 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKAL 79 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhh
Confidence 66777766 799999999999999999999999999999999986443
No 55
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.67 E-value=6e-05 Score=78.76 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=57.7
Q ss_pred ceeEEEEEEc-CCCCeecCCCeEEEEEeC------------------------------------------------Cee
Q 010942 131 QEGNIARWLK-KEGDKVSPGEVLCEVETD------------------------------------------------KAT 161 (497)
Q Consensus 131 ~eg~I~~w~v-~~Gd~V~~gd~l~eVEtd------------------------------------------------Ka~ 161 (497)
..|.|.+++| ++||.|++||+|+++++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 4699999998 999999999999999952 234
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
..|.||++|+|.++.+.+|+ .|..|++|+.|.+.
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~-~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGM 241 (413)
T ss_dssp EEEECSSSEEEEECCCCTTC-EECTTSCSEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCC-EECCCCcEEEEeCC
Confidence 68999999999999999997 99999999988754
No 56
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.67 E-value=5.6e-05 Score=76.81 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=58.2
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa-------------------------------------------------- 160 (497)
..|+|.+++|++||.|++||+|+++++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999997542
Q ss_pred --------------------------eeEEecCcceEEEEEeeCCCCeeecC-CCEEEEEeccC
Q 010942 161 --------------------------TVEMECMEEGYLAKIVKGDGSKEIKV-GEVIAITVEEE 197 (497)
Q Consensus 161 --------------------------~~ev~ap~~G~l~~i~~~~G~~~v~v-G~~l~~i~~~~ 197 (497)
...|.||++|+|.++.+..|+ .|.. |++|+.+.+.+
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~~g~~l~~i~~~~ 206 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGA-YWNDTTASLMTVADLS 206 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTC-EECCSSCCSEEEECCS
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCc-eeCCCCcceEEEecCC
Confidence 257999999999999999997 8998 99999887543
No 57
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.61 E-value=2e-05 Score=77.27 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=57.1
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCC---------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK--------------------------------------------------- 159 (497)
..|+|.+|+|++||.|++||+|+++++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999998742
Q ss_pred --------------------eeeEEecCcceEEEEEeeCCCCeeecCC--CEEEEEeccC
Q 010942 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVEEE 197 (497)
Q Consensus 160 --------------------a~~ev~ap~~G~l~~i~~~~G~~~v~vG--~~l~~i~~~~ 197 (497)
....|.||++|+|..+.+.+|+ .|..| ++|+.|.+.+
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~-~v~~g~~~~l~~i~~~~ 167 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQLD 167 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTC-EECTTCSSCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCC-EEcCCCCceeEEEecCC
Confidence 1247999999999999999997 99999 5898886643
No 58
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.57 E-value=6.5e-05 Score=75.75 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=56.1
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa-------------------------------------------------- 160 (497)
..|+|.+++|++||.|++||+|+++++.-.
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 459999999999999999999999987421
Q ss_pred -----------------------------------eeEEecCcceEEEEEeeCCCCeeecCCCE---EEEEecc
Q 010942 161 -----------------------------------TVEMECMEEGYLAKIVKGDGSKEIKVGEV---IAITVEE 196 (497)
Q Consensus 161 -----------------------------------~~ev~ap~~G~l~~i~~~~G~~~v~vG~~---l~~i~~~ 196 (497)
...|.||++|+|.++.+..|+ .|..|++ |+.+.+.
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQ-TVIAAQQAPNILTLADM 190 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTC-EECCTTSCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCC-EEecCCCCceEEEEecC
Confidence 145999999999999999997 9999987 8877653
No 59
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.55 E-value=0.00012 Score=65.96 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=41.1
Q ss_pred eEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCC
Q 010942 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179 (497)
Q Consensus 133 g~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~ 179 (497)
|.|+.+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++..+-
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L 101 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAAL 101 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhh
Confidence 56666655 899999999999999999999999999999999886443
No 60
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.52 E-value=0.00012 Score=65.40 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=39.9
Q ss_pred eEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEe
Q 010942 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (497)
Q Consensus 133 g~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~ 176 (497)
|.|+.+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++.
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN 93 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN 93 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence 56766655 899999999999999999999999999999999984
No 61
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.27 E-value=9.6e-05 Score=75.88 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=56.4
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa-------------------------------------------------- 160 (497)
..|+|.+++|++||.|++||+|+++++...
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999986421
Q ss_pred -------eeEEecCcceEEEEEeeCCCCeeecCC--CEEEEEecc
Q 010942 161 -------TVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVEE 196 (497)
Q Consensus 161 -------~~ev~ap~~G~l~~i~~~~G~~~v~vG--~~l~~i~~~ 196 (497)
...|.||++|+|.++.+.+|+ .|..| ++|+.|.+.
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~-~V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGA-LVTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTC-EECTTCSSCSEEEECC
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCC-eEcCCCCceeEEEecC
Confidence 247999999999999999997 99995 889888654
No 62
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.23 E-value=0.00046 Score=62.81 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=39.2
Q ss_pred eEEEEEEc-CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEe
Q 010942 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (497)
Q Consensus 133 g~I~~w~v-~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~ 176 (497)
|.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN 103 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 103 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence 55665544 799999999999999999999999999999999885
No 63
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=96.69 E-value=0.00011 Score=74.74 Aligned_cols=63 Identities=17% Similarity=0.355 Sum_probs=53.7
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCe--------------------------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa-------------------------------------------------- 160 (497)
..|.|.+++|++||.|++||+|+++++...
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 458999999999999999999999987521
Q ss_pred -----------------------------------eeEEecCcceEEEEEeeCCCCeeecCCCE---EEEEe
Q 010942 161 -----------------------------------TVEMECMEEGYLAKIVKGDGSKEIKVGEV---IAITV 194 (497)
Q Consensus 161 -----------------------------------~~ev~ap~~G~l~~i~~~~G~~~v~vG~~---l~~i~ 194 (497)
...|.||++|+|.++.+.+|+ .|..|++ |+.+.
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQ-TVNSNQTTPTIIKVA 189 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTC-BCCTTTSCCCCBBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCC-CccCCCCcceEEEEc
Confidence 134999999999999999997 9999998 55543
No 64
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.19 E-value=0.013 Score=59.47 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=50.7
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe----CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt----dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
+=+.+..++.||.|++||+|++|.. .....+|.||.+|+|..... .- .|..|+.|+.|...
T Consensus 265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~-~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PG-MIKSGDCAAVIGVV 329 (331)
T ss_dssp CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SS-EECTTCEEEEEECB
T ss_pred CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CC-ccCCCCEEEEEecc
Confidence 3477889999999999999999997 35678999999999987653 33 68999999988543
No 65
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=95.95 E-value=0.022 Score=58.30 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe----CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 135 IARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 135 I~~w~v~~Gd~V~~gd~l~eVEt----dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
+++..++.||.|++||+|+.|+. .+...+|.||.+|+|..+. ... .|..|+.|+.|...
T Consensus 277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~-~V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPG-RVTRGDAVAVVMED 339 (354)
T ss_dssp EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSS-EECTTCEEEEEEEE
T ss_pred EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCC-ccCCCCEEEEEeee
Confidence 78888999999999999999997 4888999999999998665 554 78999999988643
No 66
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=95.91 E-value=0.019 Score=59.15 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=50.5
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe------CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET------DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt------dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+=|.+..++.||.|++||+|++|.. .....+|.||.+|+|.-.. ..- .|..|+.|+.|..
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p-~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASA-SVHQGTELYKVMT 363 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSS-EECTTCEEEEEEE
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCC-ccCCCCEEEEEee
Confidence 3466799999999999999999987 4578899999999997665 333 7999999998754
No 67
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.70 E-value=0.0047 Score=51.69 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=41.3
Q ss_pred CCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 149 GEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 149 gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
|..+|.+|.++-...|.||.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGG-HVEAGSSYAEMEV 50 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTE-EECTTCEEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEEe
Confidence 556688888888899999999999999999997 9999999998853
No 68
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=94.66 E-value=0.036 Score=42.74 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=29.1
Q ss_pred EEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 163 ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+|.||.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 1 ~v~a~~~G~v~~~~v~~G~-~V~~G~~l~~i~~ 32 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGD-QIEKGQEVAILES 32 (72)
T ss_dssp CEECCSSEEEEEECCCTTC-EECTTCEEEEEEE
T ss_pred CEECcccEEEEEEEcCCcC-EECCCCEEEEEEC
Confidence 3789999999999999998 8999999999854
No 69
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=94.57 E-value=0.042 Score=43.00 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=30.7
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..+|.||.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~-~V~~G~~L~~l~~ 41 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGD-TVKAGQTVLVLEA 41 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTC-EECTTSEEEEEEE
T ss_pred CeEEECCCCEEEEEEEcCCcC-EEcCCCEEEEEEc
Confidence 357899999999999999998 9999999999854
No 70
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=94.32 E-value=0.057 Score=41.69 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=30.0
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..|.||.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~-~V~~G~~l~~i~~ 38 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGD-RVRVGQGLLVLEA 38 (74)
T ss_dssp CEEECSSCEEEEEECCCTTC-EECTTCEEEEEEE
T ss_pred eEEecCCCEEEEEEEcCCCC-EeCCCCEEEEEec
Confidence 46889999999999999998 8999999999854
No 71
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=93.85 E-value=0.063 Score=45.53 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=30.4
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+.|.|+.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~-~V~~Gq~L~~ld~ 34 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGD-KVKKGQTLFIIEQ 34 (116)
T ss_dssp EEECCSSCEEEEEECSCTTS-EECTTCEEEEEEC
T ss_pred eEEeCcCCEEEEEEECCCcC-EECCCCEEEEECH
Confidence 67899999999999999998 9999999999854
No 72
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=93.79 E-value=0.15 Score=51.32 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=48.7
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe----CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt----dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+-+....++.||.|++||+|++|-. .....+|.||.+|+|.-.. ..- .|..|+.|+.+..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p-~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAM-YVQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSE-EECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCC-eeCCCCEEEEEee
Confidence 4456688999999999999999954 5677899999999997665 443 7899999988754
No 73
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=93.66 E-value=0.066 Score=49.00 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=50.4
Q ss_pred ceeEEEEEEcCCCCeecC----CCeEEEEEeCCeeeEEecCcceEEEEE-------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------- 175 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~----gd~l~eVEtdKa~~ev~ap~~G~l~~i------------------------------- 175 (497)
..|+|+.+. ++.|.|-. |+.++...++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~ 94 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 94 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence 468999876 78888766 8999988876 57899999999988
Q ss_pred ----eeCCCCeeecCCCEEEEE
Q 010942 176 ----VKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 176 ----~~~~G~~~v~vG~~l~~i 193 (497)
++++|| .|+.|++|+.+
T Consensus 95 gF~~~V~~Gd-~V~~G~~L~~~ 115 (161)
T 1f3z_A 95 GFKRIAEEGQ-RVKVGDTVIEF 115 (161)
T ss_dssp TEEECSCTTC-EECTTCEEEEE
T ss_pred ccEEEEeCcC-EECCCCEEEEE
Confidence 889998 89999999987
No 74
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=93.10 E-value=0.062 Score=43.31 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=30.1
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.+|.||.+|+|.++++++|+ .|..|++|+.+..
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGG-HVEAGSSYAEMEV 38 (84)
T ss_dssp TEECCSSSCCEEEESSCTTE-EECTTCEEEEEEC
T ss_pred ceEECCCCEEEEEEECCCCC-EECCCCEEEEEEe
Confidence 46899999999999999997 9999999998853
No 75
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=92.88 E-value=0.073 Score=48.31 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=49.7
Q ss_pred ceeEEEEEEcCCCCeecC----CCeEEEEEeCCeeeEEecCcceEEEEE-------------------------------
Q 010942 131 QEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------- 175 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~----gd~l~eVEtdKa~~ev~ap~~G~l~~i------------------------------- 175 (497)
..|+|+.+. ++.|.|-. |+.++...++ ..+.||++|+|..+
T Consensus 14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~ 89 (154)
T 2gpr_A 14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN 89 (154)
T ss_dssp SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence 468888875 88888776 8999988876 58999999999984
Q ss_pred ----eeCCCCeeecCCCEEEEE
Q 010942 176 ----VKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 176 ----~~~~G~~~v~vG~~l~~i 193 (497)
++++|| .|+.|++|+.+
T Consensus 90 gF~~~V~~Gd-~V~~G~~L~~~ 110 (154)
T 2gpr_A 90 GFESFVTQDQ-EVNAGDKLVTV 110 (154)
T ss_dssp SEEECCCTTC-EECTTCEEEEE
T ss_pred ceEEEEcCCC-EEcCCCEEEEE
Confidence 889998 89999999987
No 76
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=91.92 E-value=0.1 Score=47.73 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=50.2
Q ss_pred CceeEEEEEEcCCCCeecC----CCeEEEEEeCCeeeEEecCcceEEEEE------------------------------
Q 010942 130 MQEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------ 175 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~----gd~l~eVEtdKa~~ev~ap~~G~l~~i------------------------------ 175 (497)
-..|+|+.+ .++.|.|-. |+.++...++ ..+.||++|+|..+
T Consensus 18 P~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G 93 (162)
T 1ax3_A 18 PITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKG 93 (162)
T ss_dssp CCSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTT
T ss_pred cCceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCC
Confidence 356999997 778888766 8999977773 47899999999988
Q ss_pred -----eeCCCCeeecCCCEEEEE
Q 010942 176 -----VKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 176 -----~~~~G~~~v~vG~~l~~i 193 (497)
++++|| .|+.|++|+.+
T Consensus 94 ~gF~~~V~~Gd-~V~~G~~L~~~ 115 (162)
T 1ax3_A 94 EGFTSFVSEGD-RVEPGQKLLEV 115 (162)
T ss_dssp TTEEESCCCCS-EECSEEEEEEE
T ss_pred CccEEEEeCCC-EEcCCCEEEEE
Confidence 888998 89999999987
No 77
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=91.67 E-value=0.17 Score=49.06 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=38.5
Q ss_pred CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 141 ~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~-~V~kGq~L~~ld 54 (277)
T 2f1m_A 3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQID 54 (277)
T ss_dssp -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTC-EECTTSCSEEEC
T ss_pred eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCC-EecCCCEEEEEC
Confidence 344444444556778875 4678999999999999999998 999999999984
No 78
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=91.04 E-value=0.19 Score=47.11 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=26.4
Q ss_pred EEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEE
Q 010942 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAK 174 (497)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~ 174 (497)
.++|++|+.|++||.||+-. .|-+..+|+|.+
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d 53 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 53 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence 67899999999999999754 677777777743
No 79
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=90.82 E-value=0.11 Score=42.88 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=30.5
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
...|.||.+|+|.++.+++|+ .|+.|++|+.+..
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~ie~ 58 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGD-AVAEGQEICVIEA 58 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTC-CCCTTCCCEEEEC
T ss_pred ceEEECCCCEEEEEEECCCCC-EEcCCCEEEEEec
Confidence 456899999999999999998 8999999998853
No 80
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=90.79 E-value=0.2 Score=41.56 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=30.5
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
...|.|+.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~ie~ 47 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGD-KVKAGDSLMVMIA 47 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTE-EECSSCEEEEEES
T ss_pred ceEEecCCCEEEEEEECCCCC-EECCCCEEEEEEc
Confidence 456899999999999999997 9999999999854
No 81
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=90.55 E-value=0.2 Score=50.43 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=44.9
Q ss_pred cCCCCeecCCCeEEEEEeC-CeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 140 KKEGDKVSPGEVLCEVETD-KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 140 v~~Gd~V~~gd~l~eVEtd-Ka~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
++.|+....-..-+.|+.+ .-.+.|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~-~V~kGq~L~~ld~ 90 (359)
T 3lnn_A 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGD-EVKAGDVLFTIDS 90 (359)
T ss_dssp CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTC-EECTTCEEEEEEC
T ss_pred eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCC-EEcCCCEEEEECh
Confidence 4445544455566788875 67899999999999999999998 9999999999854
No 82
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=90.51 E-value=0.22 Score=39.20 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=29.8
Q ss_pred eEEecCcceEEEEE-------eeCCCCeeecCCCEEEEEec
Q 010942 162 VEMECMEEGYLAKI-------VKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 162 ~ev~ap~~G~l~~i-------~~~~G~~~v~vG~~l~~i~~ 195 (497)
..|.||..|+|.++ ++++|+ .|..|++|+.+..
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~-~V~~G~~l~~ie~ 44 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQ-KVNVGDTLCIVEA 44 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTC-EECTTCEEEEEEE
T ss_pred eEEEcCCCeEEEEecccCcccccCCcC-EECCCCEEEEEEe
Confidence 46899999999998 899998 9999999999854
No 83
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=90.42 E-value=0.24 Score=38.75 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=25.0
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
..|+|.++++++||.|..|++|+.|++
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 51 VRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp CCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred CCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 469999999999999999999999975
No 84
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=88.85 E-value=0.42 Score=47.61 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=41.6
Q ss_pred cCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 140 v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
++.|+.-..=..-+.|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~-~V~kG~~L~~ld~ 64 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVIDP 64 (341)
T ss_dssp --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTC-EECTTCEEEEECC
T ss_pred EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCC-EECCCCEEEEECh
Confidence 4455544444456677766 4678999999999999999998 9999999999843
No 85
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=88.84 E-value=0.58 Score=42.76 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=41.2
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeE-EecCcceEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIV 176 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~e-v~ap~~G~l~~i~ 176 (497)
.||..+-..+.+||.|.+||.|+-|.|-|-.+- +.||++|+|.-+.
T Consensus 107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence 467778888999999999999999999998887 8999999998665
No 86
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=88.07 E-value=0.38 Score=37.80 Aligned_cols=28 Identities=39% Similarity=0.611 Sum_probs=25.3
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
..|+|.++++++||.|..|++|+.|+.+
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (79)
T 1ghj_A 51 ADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp SCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence 3699999999999999999999999753
No 87
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=86.95 E-value=0.35 Score=37.96 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=25.5
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
..|+|.++++++||.|..|++|+.|+..
T Consensus 50 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 50 FAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred CCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 3689999999999999999999999864
No 88
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=86.63 E-value=0.6 Score=47.77 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=25.3
Q ss_pred EEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEE
Q 010942 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLA 173 (497)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~ 173 (497)
.++|++||.|++||.||+-. .|-+..+|+|.
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~ 92 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 92 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence 68899999999999999854 56666666664
No 89
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=86.37 E-value=0.62 Score=38.17 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.6
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
..|+|.++++++||.|..|++|++|+..
T Consensus 54 ~~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 54 YDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp SCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 4699999999999999999999999853
No 90
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=86.30 E-value=0.62 Score=37.46 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=25.1
Q ss_pred CcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 167 p~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 17 ~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~ 44 (87)
T 3crk_C 17 MTMGTVQRWEKKVGE-KLSEGDLLAEIET 44 (87)
T ss_dssp CCEEEEEEECSCTTC-EECTTCEEEEEEC
T ss_pred CCcEEEEEEEcCCCC-EEcCCCEEEEEEC
Confidence 468999999999998 8999999998854
No 91
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=86.29 E-value=0.62 Score=48.22 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=42.3
Q ss_pred cCCCCeecCCCeEEEEEeC-CeeeEEecCcceEEEEEee-CCCCeeecCCCEEEEEe
Q 010942 140 KKEGDKVSPGEVLCEVETD-KATVEMECMEEGYLAKIVK-GDGSKEIKVGEVIAITV 194 (497)
Q Consensus 140 v~~Gd~V~~gd~l~eVEtd-Ka~~ev~ap~~G~l~~i~~-~~G~~~v~vG~~l~~i~ 194 (497)
++.|+.-..=...+.|+.| .-...|.++.+|+|.++++ ++|+ .|+.||+|+.+.
T Consensus 99 v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd-~VkkGq~L~~ld 154 (413)
T 3ne5_B 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLT 154 (413)
T ss_dssp CEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTC-EECTTCEEEEEE
T ss_pred EEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCC-EEcCCCEEEEEc
Confidence 3444444444556677753 5678899999999999998 9998 999999999985
No 92
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=86.09 E-value=0.52 Score=36.96 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=25.2
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
..|+|.++++++||.|..|++|+.|+.+
T Consensus 48 ~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 48 KAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 3689999999999999999999999753
No 93
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=85.05 E-value=0.59 Score=47.46 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=38.1
Q ss_pred CCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 141 ~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
+.|+....-..-+.|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.|.
T Consensus 24 ~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd-~V~kGq~L~~ld 75 (369)
T 1vf7_A 24 EAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGS-DVKAGQQLYQID 75 (369)
T ss_dssp -----CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSE-EECTTSEEEEEC
T ss_pred EeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCC-EEcCCCEEEEEC
Confidence 344433333445677765 4678999999999999999997 999999999984
No 94
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=83.85 E-value=0.68 Score=36.42 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=27.0
Q ss_pred EecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 164 v~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+-++..|.|.++++++|+ .|+.|++|+.+..
T Consensus 10 ~g~~~~G~i~~~~v~~Gd-~V~~G~~l~~ie~ 40 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGD-TIAVDDTLITLET 40 (81)
T ss_dssp CSSCSSEEEEEECCCSSC-BCCSSCCCEEEEC
T ss_pred CCCCCcEEEEEEEcCCCC-EECCCCEEEEEEe
Confidence 335789999999999998 8999999998854
No 95
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=82.93 E-value=1.3 Score=41.35 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=35.8
Q ss_pred EEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCC
Q 010942 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (497)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G 180 (497)
.++|++||.|++||.||+. |..+..|-+..+|+|.=-...+|
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G 104 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDG 104 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBT
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCC
Confidence 6799999999999999976 89999999999999975444444
No 96
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.87 E-value=1.3 Score=36.60 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=25.0
Q ss_pred cceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 168 EEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 168 ~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
.+|+|.++++++|+ .|..|++|+.+..+
T Consensus 20 ~~G~i~~~~v~~Gd-~V~~G~~L~~ie~~ 47 (98)
T 2dnc_A 20 EEGNIVKWLKKEGE-AVSAGDALCEIETD 47 (98)
T ss_dssp SEECEEEESSCTTC-EECTTSEEEEEECS
T ss_pred ccEEEEEEEcCCCC-EeCCCCEEEEEEcc
Confidence 58999999999998 89999999998543
No 97
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=82.27 E-value=0.57 Score=37.43 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=25.2
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
..|+|.++++++||.|..|++|+.|+.+
T Consensus 46 ~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 46 FAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 3588999999999999999999999864
No 98
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=81.94 E-value=0.97 Score=38.18 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=25.0
Q ss_pred CcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 167 p~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..+|+|.++++++|+ .|..|++|+++..
T Consensus 19 ~~~G~v~~~~v~~Gd-~V~~G~~L~~iE~ 46 (108)
T 2dne_A 19 MQAGTIARWEKKEGD-KINEGDLIAEVET 46 (108)
T ss_dssp CCEEEEEECSSCTTC-EECTTSEEEEEEC
T ss_pred cccEEEEEEEcCCCC-EecCCCEEEEEEc
Confidence 358999999999998 8999999998854
No 99
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=80.75 E-value=1.1 Score=39.20 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=25.4
Q ss_pred ceeEEEEEEcCCCC-eecCCCeEEEEEeC
Q 010942 131 QEGNIARWLKKEGD-KVSPGEVLCEVETD 158 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd-~V~~gd~l~eVEtd 158 (497)
..|+|.++++++|| .|..|++|++|+..
T Consensus 77 ~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~ 105 (128)
T 1y8o_B 77 EEGYLAKILVPEGTRDVPLGTPLCIIVEK 105 (128)
T ss_dssp SCEEEEEESSCTTCCSEETTCEEEEEESS
T ss_pred CCeEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 46999999999998 89999999999864
No 100
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=78.53 E-value=0.54 Score=47.24 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=42.5
Q ss_pred cCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 140 v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
++.|+.-..=..-+.|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~-~V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQ-QVKKGDLLAEIDS 65 (369)
T ss_dssp CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTS-CCCSSCCCEECCC
T ss_pred EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCC-EECCCCEEEEEcC
Confidence 3445555555566778754 4668999999999999999998 9999999999843
No 101
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=77.21 E-value=2.1 Score=47.36 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=31.2
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
...|.||..|+|.++++++|| .|+.||+|+++..+
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~iEam 646 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQ-EVQEGQALCTIEAM 646 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTC-EECTTCEEEEEECS
T ss_pred CCeEECCCcEEEEEEEeCCCC-EEcCCCEEEEEEec
Confidence 456999999999999999998 99999999988543
No 102
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=75.79 E-value=0.92 Score=42.53 Aligned_cols=45 Identities=31% Similarity=0.417 Sum_probs=34.1
Q ss_pred cCCCCeecCCCeEEEEEeCCeeeEEecCcceEEE--------------------------EE--eeCCCCeeecCCCEEE
Q 010942 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLA--------------------------KI--VKGDGSKEIKVGEVIA 191 (497)
Q Consensus 140 v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~--------------------------~i--~~~~G~~~v~vG~~l~ 191 (497)
|++|+.|+.||+|+ -| ..|-|..+|+|. .+ .+++|+ .|..|+.|.
T Consensus 85 V~dG~~V~~GdvLA---Kd---~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd-~V~~Ge~L~ 157 (193)
T 2xha_A 85 LRVGTKVKQGLPLS---KN---EEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGK-EVKQGEMLA 157 (193)
T ss_dssp CCTTCEECTTSBSS---TT---SCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTC-EECTTCEEE
T ss_pred cCCCCEEcCCCEEe---cC---CeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCC-EECCCCCcc
Confidence 68899999999998 33 334577777764 12 788897 899999875
No 103
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=75.20 E-value=4.7 Score=37.39 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=15.5
Q ss_pred eeCCCCeeecCCCEEEEE
Q 010942 176 VKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 176 ~~~~G~~~v~vG~~l~~i 193 (497)
++++|| .|+.||+|+.+
T Consensus 121 ~V~~Gd-~Vk~Gd~L~~f 137 (183)
T 3our_B 121 IAEEGQ-TVKAGDTVIEF 137 (183)
T ss_dssp CSCTTC-EECTTCEEEEE
T ss_pred EEeCcC-EEcCCCEEEEE
Confidence 889997 89999999987
No 104
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=73.86 E-value=0.53 Score=37.14 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=24.4
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
..|+|.++++++||.|..|++|+.|+.
T Consensus 52 ~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 52 ADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp SBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 468999999999999999999998864
No 105
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=70.11 E-value=4.4 Score=41.04 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=40.1
Q ss_pred EEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 138 WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 138 w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
-.++.|+.|++||+|+++- | .+|.+|.+|.+.-. . .- .|..|+.++.+...
T Consensus 279 ~~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~~--p-~p-~V~~G~~~~~i~~~ 329 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIVF--P-NR-HVAIGQRAALMVCE 329 (350)
T ss_dssp TTCCBTEECCTTCEEEEET-T---EEEECSSSSCEEES--C-CT-TCCTTSEEEEEEEE
T ss_pred ccccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEEe--c-CC-CCCCCcEEEEEEEE
Confidence 3468999999999999994 4 78899999997533 3 33 69999988877543
No 106
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=69.93 E-value=3.8 Score=48.07 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=30.9
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
..|.||..|+|.++++++|+ .|+.||+|+++..+
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd-~V~~G~~l~~ieam 1111 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGE-TVKANQPLLITEAM 1111 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTC-EECTTCEEEEEESS
T ss_pred ceeecCceEEEEEEEeCCCC-EECCCCEEEEEEec
Confidence 46999999999999999998 99999999998544
No 107
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=69.86 E-value=3.8 Score=48.49 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=31.7
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccC
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
...|.||..|+|.++++++|| .|+.||+|+++..+.
T Consensus 1167 ~~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A 1167 AELLYSEYTGRFWKPVAAVGD-HVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp CEEEECSSCEEEEEESSCTTC-EECSSCEEEEEEETT
T ss_pred CcEEeCCCcEEEEEEEcCCCC-EECCCCEEEEEEecC
Confidence 456999999999999999998 999999999985443
No 108
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=67.28 E-value=3.7 Score=36.99 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=23.6
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
-.|+=.+.+|++||+|+.||+|+++.-+
T Consensus 86 l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 113 (154)
T 2gpr_A 86 LDGNGFESFVTQDQEVNAGDKLVTVDLK 113 (154)
T ss_dssp GTTCSEEECCCTTCEECTTCEEEEECHH
T ss_pred cCCCceEEEEcCCCEEcCCCEEEEECHH
Confidence 4466678899999999999999999753
No 109
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=67.10 E-value=3.1 Score=46.44 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=30.7
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
..|.||..|+|.++.+++|+ .|+.||+|+++...
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd-~V~~Gq~L~~iEam 683 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGA-KVAKGQPLCVLSAM 683 (718)
T ss_dssp SCEECSSCEEEEEECSCTTC-CBCTTCCCEEEESS
T ss_pred ceEeCCCCeEEEEEEeCCCC-eeCCCCEEEEEecc
Confidence 46999999999999999998 89999999998543
No 110
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=65.63 E-value=5 Score=47.47 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=30.3
Q ss_pred EEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEE
Q 010942 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLA 173 (497)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~ 173 (497)
.++|++||.|++||.||+. |--+..|-+..+|+|.
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 5789999999999999976 6778888888888875
No 111
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=60.57 E-value=5.9 Score=46.58 Aligned_cols=33 Identities=12% Similarity=0.340 Sum_probs=27.4
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..|.||..|+|.++.+++|+ .|+.||+|+++..
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd-~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQ-AVNAGDVLVSIEA 1128 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCC-CC---CEEEEEEC
T ss_pred ceeeCCCCeEEEEEEcCCcC-EeCCCCEEEEEEc
Confidence 56999999999999999998 8999999998854
No 112
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=58.74 E-value=2 Score=44.93 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=0.0
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
-.+|+|.++++++||.|..|++|+.|+.+..
T Consensus 51 p~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 51 PVKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp -------------------------------
T ss_pred CCCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 3579999999999999999999999987543
No 113
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=58.66 E-value=2 Score=47.45 Aligned_cols=33 Identities=9% Similarity=0.288 Sum_probs=0.0
Q ss_pred eEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 162 ~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..|.||..|+|.++++++|| .|+.||+|+++..
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~iEa 635 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQ-TVEAGATLVVLEA 635 (675)
T ss_dssp ----------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCC-EEcCCCEEEEEEe
Confidence 45899999999999999998 9999999998743
No 114
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=58.53 E-value=5.4 Score=37.02 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=23.8
Q ss_pred eeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 132 eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
+|+--+++|++||+|++||+|+++.-++
T Consensus 114 ~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 114 KGEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCccceEEEeCcCEEcCCCEEEEECHHH
Confidence 3666789999999999999999997543
No 115
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=53.59 E-value=16 Score=38.16 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=36.7
Q ss_pred EEeCCeeeEEecCcceEEEEE-------------------------------eeCCCCeeecCCCEEEEEeccCC
Q 010942 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 155 VEtdKa~~ev~ap~~G~l~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
+...+...+|.|+.+|||..| +.+.|+ .|..|++|++|..+.+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~-~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGD-RVQKGEALATIHSNRP 402 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTC-EECTTCEEEEEEESSS
T ss_pred CCCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCC-EECCCCeEEEEEcCCc
Confidence 456888999999999999887 788898 8999999999876543
No 116
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=51.85 E-value=18 Score=37.97 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=33.8
Q ss_pred EeCCeeeEEecCcceEEEEE-------------------------------eeCCCCeeecCCCEEEEEe
Q 010942 156 ETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 156 EtdKa~~ev~ap~~G~l~~i-------------------------------~~~~G~~~v~vG~~l~~i~ 194 (497)
...+...+|.|+.+|||..| +++.|+ .|..|++|+.+.
T Consensus 333 ~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~-~V~~g~~l~~i~ 401 (436)
T 3h5q_A 333 PQAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGD-KVEEGESLLTIH 401 (436)
T ss_dssp CCCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTC-EECTTSEEEEEE
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcC-EeCCCCeEEEEe
Confidence 44678899999999999988 678997 899999999998
No 117
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=51.82 E-value=7.8 Score=39.48 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=12.5
Q ss_pred cCCCCeecCCCeEE
Q 010942 140 KKEGDKVSPGEVLC 153 (497)
Q Consensus 140 v~~Gd~V~~gd~l~ 153 (497)
|+.|+.|+.||+|+
T Consensus 125 v~~g~~v~~G~vla 138 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS 138 (352)
T ss_dssp CCTTCEECTTCBSB
T ss_pred cCCCCEEccCcEEe
Confidence 78999999999877
No 118
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=51.12 E-value=16 Score=38.10 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=35.0
Q ss_pred EEeCCeeeEEecCcceEEEEE-------------------------------eeCCCCeeecCCCEEEEEeccCC
Q 010942 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 155 VEtdKa~~ev~ap~~G~l~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
+...+ ..+|.|+.+|||..| +.+.|| .|..|++|+.+..+.+
T Consensus 322 ~~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~-~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 322 LPLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGD-RVERGEALALVYHRRR 394 (423)
T ss_dssp SCCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTC-EECTTSEEEEEEECSS
T ss_pred CCCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCC-EeCCCCeEEEEEeCCc
Confidence 34567 889999999999877 788898 8999999999876543
No 119
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=50.75 E-value=10 Score=37.38 Aligned_cols=24 Identities=29% Similarity=0.399 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 010942 134 NIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 134 ~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
.-++|++++|+.|++||+|++|+-
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEEE
Confidence 446899999999999999999984
No 120
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=48.64 E-value=10 Score=37.52 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 010942 135 IARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 135 I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
-++|++++||.|++||+|++|+-
T Consensus 73 ~v~~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 73 AFTPLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCCccCCCEEEEEEE
Confidence 36899999999999999999984
No 121
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=48.28 E-value=12 Score=36.55 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.9
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 010942 136 ARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
++|.+++|+.|.+||+|++|+.
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEe
Confidence 5799999999999999999984
No 122
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=48.21 E-value=3.8 Score=39.26 Aligned_cols=29 Identities=28% Similarity=0.514 Sum_probs=0.0
Q ss_pred cCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 166 CMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 166 ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
+..+|+|.++++++|| .|..|++|+.+..
T Consensus 14 sm~eG~I~~w~vk~Gd-~V~~Gd~L~~iEt 42 (229)
T 1zy8_K 14 TMEEGNIVKWLKKEGE-AVSAGDALCEIET 42 (229)
T ss_dssp ------------------------------
T ss_pred CCCcEEEEEEecCCCC-EeCCCCEEEEEec
Confidence 3468999999999998 8999999998743
No 123
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=48.13 E-value=10 Score=37.51 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 010942 136 ARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
++|++++|+.|++||+|++|+.
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 4899999999999999999984
No 124
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=47.27 E-value=11 Score=37.52 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.7
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 010942 135 IARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 135 I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
-++|++++|+.|++||+|++|+.
T Consensus 85 ~v~~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 85 KYEIHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp EEEECCCTTCEECSSCEEEEEEE
T ss_pred EEEEEeCCCCEeeCCCEEEEEEE
Confidence 45899999999999999999984
No 125
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=46.52 E-value=11 Score=34.16 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.1
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
-.|+=.+.+|++||+|+.||+|+++.-+
T Consensus 91 l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 91 LKGEGFKRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp GTTTTEEECSCTTCEECTTCEEEEECHH
T ss_pred cCCCccEEEEeCcCEECCCCEEEEECHH
Confidence 3455678899999999999999999753
No 126
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=45.94 E-value=9.3 Score=37.77 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 010942 135 IARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 135 I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
-++|++++||.|++||+|++|+.
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 72 LSKFNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp EEEESCCTTCEEESCEEEEEEEE
T ss_pred EEEEEcCCCCCcCCCCEEEEEEE
Confidence 36899999999999999999984
No 127
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=45.86 E-value=12 Score=37.31 Aligned_cols=23 Identities=30% Similarity=0.759 Sum_probs=20.4
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 010942 135 IARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 135 I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
-++|.+++|+.|.+||+|++|+.
T Consensus 87 ~v~~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 87 EVDWRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEEe
Confidence 35899999999999999999984
No 128
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=45.23 E-value=16 Score=37.21 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=29.6
Q ss_pred eeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 160 a~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
-..-|.||.+|.+. ..++.|+ .|+.||+|+.|.+
T Consensus 289 ~~~~v~A~~~Gl~~-~~v~lGd-~V~kG~~la~I~d 322 (368)
T 3fmc_A 289 NYRKFHAPKAGMVE-YLGKVGV-PMKATDPLVNLLR 322 (368)
T ss_dssp GEEEEECSSCEEEE-ECSCTTC-CBCTTCEEEEEEC
T ss_pred CcEEEecCCCEEEE-EeCCCCC-EeCCCCEEEEEEc
Confidence 34458999999997 7789998 9999999999976
No 129
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=44.61 E-value=13 Score=37.49 Aligned_cols=25 Identities=24% Similarity=0.664 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
+.-++|.+++|+.|.+||+|++|+.
T Consensus 107 ~~~v~~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 107 QVSIEWHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp CCEEEESSCTTCEECTTCEEEEEEE
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEe
Confidence 3346899999999999999999984
No 130
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=44.39 E-value=13 Score=36.92 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEe
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
+.-++|.+++|+.|.+||+|++|+.
T Consensus 84 ~~~v~~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 84 DVRLTWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp SSEEEESCCTTCEECTTCEEEEEEE
T ss_pred CeEEEEEcCCCCEecCCCEEEEEEE
Confidence 3346899999999999999999985
No 131
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=42.56 E-value=16 Score=38.21 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=36.4
Q ss_pred EEeCCeeeEEecCcceEEEEE-------------------------------eeCCCCeeecCCCEEEEEeccCC
Q 010942 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 155 VEtdKa~~ev~ap~~G~l~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
+...+...+|.|+.+|||..| +.+.|+ .|..|++|++|..+.+
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~-~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGD-QVDGQRPLAVIHAKDE 407 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTC-EEBTTBCSEEEEESSH
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCC-EECCCCeEEEEecCCH
Confidence 456788899999999999887 788898 8999999999875543
No 132
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=41.00 E-value=10 Score=34.34 Aligned_cols=29 Identities=38% Similarity=0.550 Sum_probs=24.2
Q ss_pred ceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 131 ~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
-.|+=.+.+|++||+|+.||+|+++.-++
T Consensus 91 l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 91 LKGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp TTTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred cCCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 45666788999999999999999987543
No 133
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=39.59 E-value=14 Score=36.63 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 010942 136 ARWLKKEGDKVSPGEVLCEVET 157 (497)
Q Consensus 136 ~~w~v~~Gd~V~~gd~l~eVEt 157 (497)
++|.+++|+.|.+||+|++|+.
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEEE
Confidence 5799999999999999999984
No 134
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=39.54 E-value=24 Score=35.30 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=29.5
Q ss_pred CeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 159 Ka~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
..+.-|.||.+|.+.- .++.|+ .|+.||+|+++.+.
T Consensus 255 ~~~~~v~A~~~Gl~~~-~v~~Gd-~V~~G~~la~I~dp 290 (331)
T 3na6_A 255 DGDCYLFSEHDGLFEI-MIDLGE-PVQEGDLVARVWSP 290 (331)
T ss_dssp CSCCCEECSSCEEEEE-SSCTTC-EECTTCEEEEEECS
T ss_pred CCcEEEeCCCCeEEEE-cCCCCC-EEcCCCEEEEEEcC
Confidence 3455689999998864 689998 89999999998763
No 135
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=39.13 E-value=39 Score=35.72 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=35.3
Q ss_pred EEeCCeeeEEecCcceEEEE-----------------------------EeeCCCCeeecCCCEEEEEeccCC
Q 010942 155 VETDKATVEMECMEEGYLAK-----------------------------IVKGDGSKEIKVGEVIAITVEEEE 198 (497)
Q Consensus 155 VEtdKa~~ev~ap~~G~l~~-----------------------------i~~~~G~~~v~vG~~l~~i~~~~~ 198 (497)
+-..+...+|.|+.+|||.. ++++.|+ .|..|++|++|..+.+
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~-~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQ-RLRRGTPWLRVHRDGP 437 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTC-EECTTCEEEEEEESSS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCC-EECCCCeEEEEEcCCh
Confidence 45678889999999999954 4778898 8999999999875443
No 136
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=36.62 E-value=19 Score=37.68 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=25.9
Q ss_pred CCceeEEEEEEcCCCCeecCCCeEEEEEeCCe
Q 010942 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (497)
Q Consensus 129 ~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa 160 (497)
.++-+-=+.++++.||.|++||+|++|=.++.
T Consensus 374 ~id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~~ 405 (436)
T 3h5q_A 374 DIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQ 405 (436)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEEESSS
T ss_pred CCCCCCceEEecCCcCEeCCCCeEEEEeCChH
Confidence 34556678999999999999999999874443
No 137
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=36.37 E-value=36 Score=30.98 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=33.9
Q ss_pred eecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEeccCCcc
Q 010942 145 KVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 200 (497)
Q Consensus 145 ~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~~~~~ 200 (497)
.+++|+.|+.++. +|+-.-+.+.+|+ .|..|+.||.+.....++
T Consensus 95 ~lkkGt~L~lvpa-----------eG~~V~~i~~~G~-rV~kgd~lA~i~T~KGEV 138 (169)
T 3d4r_A 95 YLKAGTKLISVPA-----------EGYKVYPIMDFGF-RVLKGYRLATLESKKGDL 138 (169)
T ss_dssp EECTTCBCEEEEE-----------CSSEEEECCCCSE-EECTTCEEEEEECTTCCE
T ss_pred EEcCCCEEEEEEe-----------CceEEEEEcCcCc-EeccCCeEEEEEecCceE
Confidence 4677788888874 4666677889997 999999999986655543
No 138
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=35.90 E-value=15 Score=33.83 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=13.0
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 010942 137 RWLKKEGDKVSPGEVLCEVE 156 (497)
Q Consensus 137 ~w~v~~Gd~V~~gd~l~eVE 156 (497)
++.|++||.|++||+|..+-
T Consensus 84 ~i~V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 84 QIQVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp SCCCCTTCEECTTCEEEEEC
T ss_pred ccccCCCCEEcCCCEEEeec
Confidence 44566677777777666665
No 139
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=33.75 E-value=28 Score=36.39 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.3
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
++-+-=+.++++.||.|++||+|++|=++.
T Consensus 372 ~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 372 IDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 444556889999999999999999998764
No 140
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.39 E-value=28 Score=36.28 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=25.1
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
++-+-=+.++++.||.|++||+|++|=++.
T Consensus 364 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 364 IDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 444556889999999999999999998764
No 141
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=32.00 E-value=30 Score=36.57 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
+-=+.++++.||.|++||+|++|=++.
T Consensus 410 ~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 410 GVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp SCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CCceEEEccCCCEECCCCeEEEEEcCC
Confidence 455889999999999999999998764
No 142
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=31.60 E-value=43 Score=33.57 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=29.3
Q ss_pred CCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEEecc
Q 010942 158 DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 158 dKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~~ 196 (497)
.+...-+.|+.+|.+. ..++.|+ .|+.|++|+.+.+.
T Consensus 264 ~~~~~~v~A~~~G~~~-~~~~~g~-~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 264 READAYVMAPRTGLFE-PTHYVGE-EVRTGETAGWIHFV 300 (354)
T ss_dssp CCGGGEEECSSCEEEE-ESCCTTC-EECTTSEEEEEECT
T ss_pred cCCcEEEECCCCEEEE-EeCCCCC-EeCCCCEEEEEECC
Confidence 3445568899999664 5678997 99999999998753
No 143
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=31.53 E-value=68 Score=27.99 Aligned_cols=31 Identities=26% Similarity=0.226 Sum_probs=25.1
Q ss_pred EecCcceEEEEEee-CCCCeeecCCCEEEEEec
Q 010942 164 MECMEEGYLAKIVK-GDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 164 v~ap~~G~l~~i~~-~~G~~~v~vG~~l~~i~~ 195 (497)
+.+|.-|.|..+.+ ++|+ .|..|++|+++..
T Consensus 39 ~a~~~lG~i~~V~lp~vGd-~V~~Gd~l~~VEs 70 (136)
T 1zko_A 39 HAQEQLGDVVYVDLPEVGR-EVKKGEVVASIES 70 (136)
T ss_dssp HHHHHHCSEEEEECCCTTC-EECTTCEEEEEEE
T ss_pred hhcccCCCcEEEEecCCCC-EEeCCCEEEEEEE
Confidence 44677788877777 9997 8999999998843
No 144
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=29.68 E-value=54 Score=35.64 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=40.1
Q ss_pred EcCCCCeecCCCeEEEEEeCC-eeeEE--ecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 139 LKKEGDKVSPGEVLCEVETDK-ATVEM--ECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 139 ~v~~Gd~V~~gd~l~eVEtdK-a~~ev--~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
.+++||.|..||.+++|.-.. ....| +....|+|+.| .+| ...+-++++.+.+
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g--~~~v~~~v~~i~~ 185 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESG--SFTIDDPICVIET 185 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCE--EECTTSCCEEEEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCC--cceeceeEEEEec
Confidence 379999999999999986433 33443 44478999987 677 4889999988743
No 145
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=29.24 E-value=50 Score=28.66 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=25.2
Q ss_pred EecCcceEEEEEee-CCCCeeecCCCEEEEEec
Q 010942 164 MECMEEGYLAKIVK-GDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 164 v~ap~~G~l~~i~~-~~G~~~v~vG~~l~~i~~ 195 (497)
+..+.-|.|..+.+ ++|+ .|..|++|+.+..
T Consensus 30 ~a~~~lG~i~~v~lp~~G~-~V~~g~~l~~vEs 61 (131)
T 1hpc_A 30 HAQDHLGEVVFVELPEPGV-SVTKGKGFGAVES 61 (131)
T ss_dssp HHHHHHCSEEEEECCCTTC-EECBTSEEEEEEE
T ss_pred hhcccCCCceEEEecCCCC-EEeCCCEEEEEEe
Confidence 34677788888877 8997 8999999998843
No 146
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=28.63 E-value=59 Score=29.71 Aligned_cols=63 Identities=6% Similarity=0.044 Sum_probs=39.7
Q ss_pred ceEEecCCC--------CCCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCE
Q 010942 118 HQEIGMPSL--------SPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEV 189 (497)
Q Consensus 118 ~~~i~mP~l--------g~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~ 189 (497)
-++|..|.= =-.+.+|+|+..- | -.+.|+.+.-..-+-+- |.++.+++|+ .|+.||+
T Consensus 34 GiDi~~~~G~~g~~gtpV~A~~~G~V~~~~---------G-~~V~I~H~~g~~t~Y~H----L~~i~V~~G~-~V~~Gq~ 98 (182)
T 3it5_A 34 SFDASYDWPRWGSATYSVVAAHAGTVRVLS---------R-CQVRVTHPSGWATNYYH----MDQIQVSNGQ-QVSADTK 98 (182)
T ss_dssp EEEEESSCCCTTSCCCEEECSSSEEEEEEE---------T-TEEEEECTTSEEEEEES----EESCCCCTTC-EECTTCE
T ss_pred cEEecCCCCCCCCCCCEEEeccCEEEEEEC---------C-eEEEEEECCcEEEEEEc----CCccccCCCC-EEcCCCE
Confidence 467777731 1125778887753 3 34456655433333332 4567899998 8999999
Q ss_pred EEEEec
Q 010942 190 IAITVE 195 (497)
Q Consensus 190 l~~i~~ 195 (497)
|+.+..
T Consensus 99 IG~vG~ 104 (182)
T 3it5_A 99 LGVYAG 104 (182)
T ss_dssp EEEECS
T ss_pred EEeecC
Confidence 998854
No 147
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=27.19 E-value=27 Score=33.66 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCeecCCCeEEEEEeC
Q 010942 133 GNIARWLKKEGDKVSPGEVLCEVETD 158 (497)
Q Consensus 133 g~I~~w~v~~Gd~V~~gd~l~eVEtd 158 (497)
+-+.++.|++||.|++||+|+.+-..
T Consensus 130 ~HL~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 130 QSLSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EEESEESCCTTCEECTTCEEEECBCC
T ss_pred ecCCccccCCCCEECCCCEEEEeCCc
Confidence 44557789999999999999988754
No 148
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=26.66 E-value=29 Score=34.14 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=15.3
Q ss_pred EeeCCCCeeecCCCEEEEEeccC
Q 010942 175 IVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 175 i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
+.+++|+ .|+.||+|+.+...+
T Consensus 232 i~V~~G~-~V~~Gq~IG~vG~tG 253 (282)
T 2hsi_A 232 IDVKLGQ-QVPRGGVLGKVGATG 253 (282)
T ss_dssp ECSCTTC-EECTTCEEEECCCTT
T ss_pred cccCCcC-EECCCCEEEEECCCC
Confidence 4567886 788888888765443
No 149
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=26.41 E-value=26 Score=34.54 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=19.5
Q ss_pred EEEEcCCCCeecCC------CeEEEEEe
Q 010942 136 ARWLKKEGDKVSPG------EVLCEVET 157 (497)
Q Consensus 136 ~~w~v~~Gd~V~~g------d~l~eVEt 157 (497)
++|.+++|+.|.+| |+|++|+.
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~G 96 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKITG 96 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEEE
Confidence 57999999999999 99998874
No 150
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=25.85 E-value=30 Score=34.23 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=16.3
Q ss_pred EeeCCCCeeecCCCEEEEEeccC
Q 010942 175 IVKGDGSKEIKVGEVIAITVEEE 197 (497)
Q Consensus 175 i~~~~G~~~v~vG~~l~~i~~~~ 197 (497)
+.|++|+ .|+.||+|+.+...+
T Consensus 239 i~Vk~Gq-~V~~GqvIG~vG~TG 260 (291)
T 1qwy_A 239 LTVSAGD-KVKAGDQIAYSGSTG 260 (291)
T ss_dssp ECCCTTC-EECTTCEEEECCCCS
T ss_pred cccCCcC-EECCCCEEEEECCCC
Confidence 4678887 788888888775543
No 151
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=25.18 E-value=29 Score=36.35 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=25.3
Q ss_pred CceeEEEEEEcCCCCeecCCCeEEEEEeCC
Q 010942 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (497)
Q Consensus 130 ~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdK 159 (497)
++-+-=+.++++.||.|++||+|++|=++.
T Consensus 377 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 377 IDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 444556889999999999999999998764
No 152
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.87 E-value=63 Score=19.91 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHHhcC
Q 010942 432 GLSTIAEEVRQLAQKAKDN 450 (497)
Q Consensus 432 sl~eIa~ei~~l~~kar~g 450 (497)
.|.++++.++.|..+.|+|
T Consensus 9 eledlqerlrklrkklrsg 27 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLRSG 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 4678888888888888875
No 153
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=23.91 E-value=1e+02 Score=33.34 Aligned_cols=53 Identities=30% Similarity=0.384 Sum_probs=39.1
Q ss_pred EcCCCCeecCCCeEEEEEeC-CeeeEE--ecCcceEEEEEeeCCCCeeecCCCEEEEEe
Q 010942 139 LKKEGDKVSPGEVLCEVETD-KATVEM--ECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (497)
Q Consensus 139 ~v~~Gd~V~~gd~l~eVEtd-Ka~~ev--~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~ 194 (497)
.+++||.|..||.+.+|.-. -....| +....|+|..|. .+| ...+-++++.+.
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i~-~~g--~~~v~~~i~~i~ 178 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIA-EEG--DYTIEEVIAKVK 178 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEEC-CSE--EECTTSEEEEEE
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEec-cCC--cccccceEEEEe
Confidence 47999999999999988633 233333 445789998764 566 488899998774
No 154
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=23.88 E-value=39 Score=30.53 Aligned_cols=32 Identities=9% Similarity=0.328 Sum_probs=25.0
Q ss_pred cChhhhhhHHHcCCCCCcccccCCCCccchhhHHHH
Q 010942 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292 (497)
Q Consensus 257 aSP~ARklA~e~gIDLs~V~GTG~~GrItk~DV~~~ 292 (497)
..|.+++.++++|||++.-. --.|+.+|++.|
T Consensus 68 ~d~~a~~~l~~~Gid~s~h~----ar~l~~~d~~~~ 99 (173)
T 4etm_A 68 PHEGTQEILRREGISFDGML----ARQVSEQDLDDF 99 (173)
T ss_dssp CCHHHHHHHHHTTCCCTTCC----CCBCCHHHHHHC
T ss_pred CCHHHHHHHHHCCccccCCc----cccCCHhhcCCC
Confidence 57899999999999997543 235888888764
No 155
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=22.62 E-value=37 Score=32.76 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=12.1
Q ss_pred eeCCCCeeecCCCEEEEEecc
Q 010942 176 VKGDGSKEIKVGEVIAITVEE 196 (497)
Q Consensus 176 ~~~~G~~~v~vG~~l~~i~~~ 196 (497)
.|+.|+ .|..||+|+.+...
T Consensus 183 ~V~~G~-~V~~Gq~IG~vG~t 202 (252)
T 3nyy_A 183 ELEKGD-PVKAGDLLGYMGDS 202 (252)
T ss_dssp SCCTTC-EECTTCEEEECBCC
T ss_pred cCCCCC-EECCCCEEEEECCC
Confidence 456665 66666666665443
No 156
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=21.61 E-value=77 Score=31.30 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=27.6
Q ss_pred eeEEecCcceEEEEEeeCCCCeeecCCCEEEEEec
Q 010942 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (497)
Q Consensus 161 ~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i~~ 195 (497)
..-+.|+..|.+. -.++.|+ .|+.|++|+.+.+
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~-~V~~G~~la~i~d 289 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMD-EVEQGDVVGVLHP 289 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTC-EECTTCEEEEEEC
T ss_pred ceEEeCCCCeEEE-EeCCCCC-EeCCCCEEEEEEC
Confidence 3347899999887 6678897 9999999999865
No 157
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=20.03 E-value=79 Score=30.33 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=41.7
Q ss_pred ceEEecCCCC----CCCceeEEEEEEcCCCCeecCCCeEEEEEeCCeeeEEecCcceEEEEEeeCCCCeeecCCCEEEEE
Q 010942 118 HQEIGMPSLS----PTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (497)
Q Consensus 118 ~~~i~mP~lg----~~~~eg~I~~w~v~~Gd~V~~gd~l~eVEtdKa~~ev~ap~~G~l~~i~~~~G~~~v~vG~~l~~i 193 (497)
-+.|..|.-. -.+..|+|+.+--..| -| ..+.|+-..-..-+- +-|.++.|+.|+ .|..|++|+.+
T Consensus 83 GIDi~a~~Gt~~pV~A~~~G~V~~~g~~~~----~G-~~ViI~Hg~G~~t~Y----~HL~~i~Vk~Gd-~V~~Gq~IG~v 152 (245)
T 3tuf_B 83 GIDLAEKDGKDFDVSASLSGTVVKAEKDPV----LG-YVVEVEHADGLSTVY----QSLSEVSVEQGD-KVKQNQVIGKS 152 (245)
T ss_dssp SEEEEETTCCCCEEECSSCEEEEEEEEETT----TE-EEEEEECSTTEEEEE----EEESEESCCTTC-EECTTCEEEEC
T ss_pred cEEEeCCCCCcceEEeCcCeEEEEEEecCC----Cc-eEEEEEeCCCEEEEE----ecCCccccCCCC-EECCCCEEEEe
Confidence 3566665422 1357788877654332 12 244555543222222 335578899997 99999999998
Q ss_pred ecc
Q 010942 194 VEE 196 (497)
Q Consensus 194 ~~~ 196 (497)
...
T Consensus 153 G~t 155 (245)
T 3tuf_B 153 GKN 155 (245)
T ss_dssp BCC
T ss_pred CCc
Confidence 654
Done!