BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010943
(497 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0STE5|SYI_LEPBP Isoleucine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / ATCC 23582 / Paris) GN=ileS PE=3 SV=1
Length = 915
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 295 SKALGKVVSGPPEDLVPEYKANVVHLQQDNQNIADNVE--EDSFQHLRTAVMEYRGTMKE 352
SK+LG V++ P D++ +Y A+++ L Q+ D+V+ +DS + + A + R T +
Sbjct: 600 SKSLGNVIN-PTTDIINQYGADILRLWVSTQDFRDDVKIGKDSIKTVSEAYRKIRNTFR- 657
Query: 353 YCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIFET 397
Y A +++ E+L K++ K + ++E KK+++T
Sbjct: 658 YLLGNTSAETLTWNLKKEELDTIDKYYLHKLAKLNDEV-KKLYDT 701
>sp|B0SBW4|SYI_LEPBA Isoleucine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=ileS PE=3 SV=1
Length = 915
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 295 SKALGKVVSGPPEDLVPEYKANVVHLQQDNQNIADNVE--EDSFQHLRTAVMEYRGTMKE 352
SK+LG V++ P D++ +Y A+++ L Q+ D+V+ +DS + + A + R T +
Sbjct: 600 SKSLGNVIN-PTTDIINQYGADILRLWVSTQDFRDDVKIGKDSIKTVSEAYRKIRNTFR- 657
Query: 353 YCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIFET 397
Y A +++ E+L K++ K + ++E KK+++T
Sbjct: 658 YLLGNTSAETLTWNLKKEELDTIDKYYLHKLAKLNDEV-KKLYDT 701
>sp|A4WAB7|OPGD_ENT38 Glucans biosynthesis protein D OS=Enterobacter sp. (strain 638)
GN=mdoD PE=3 SV=1
Length = 551
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 104 VSSFLGKDYVKPAQPTNGTGLASKPLKLD-----PKEFP-MSALWGEETKP 148
+ SFLG Y + T GL+++ L +D P+EFP ++ W E KP
Sbjct: 174 IVSFLGASYFRAVDDTYQYGLSARGLAIDTFTDTPEEFPDFTSFWFETVKP 224
>sp|Q6AK45|SYI_DESPS Isoleucine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54
/ DSM 12343) GN=ileS PE=3 SV=1
Length = 939
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 292 KRRSKALGKVVSGPPEDLVPEYKANVVHLQQDNQNIADNVE---------EDSFQHLRTA 342
K+ SK++G VV+ P++++ EY A ++ L +++ D+V+ DS++ +R
Sbjct: 601 KKMSKSVGNVVA--PQEVIDEYGAEILRLWVSSEDYRDDVKVSKEILKQVSDSYRKIRNT 658
Query: 343 VMEYRGTMKEY 353
+ + G + ++
Sbjct: 659 IRYFLGNLNDF 669
>sp|Q8K3A0|HSC20_MOUSE Iron-sulfur cluster co-chaperone protein HscB, mitochondrial OS=Mus
musculus GN=Hscb PE=2 SV=2
Length = 234
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 310 VPE---YKAN---VVHLQQDNQNIADNVEEDSFQHLRTAVMEYRGTMKEYCKAAIDAFAQ 363
+PE YKA+ +V + + N+ +AD E + + + V R KE+ AF Q
Sbjct: 148 IPEGTDYKADSQFLVEIMEINERLADAQSEAAMEEIEATV---RAKQKEFTDNINSAFEQ 204
Query: 364 GDHVQAEKLLEQGKFF 379
GD +A++LL + ++F
Sbjct: 205 GDFEKAKELLTKMRYF 220
>sp|Q9UTP4|YLL3_SCHPO Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=4
SV=1
Length = 206
Score = 32.7 bits (73), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 332 EEDSFQHLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESN 391
E + F+ L + E RG + + A A++ G+ +A +L ++GK E+ + ++
Sbjct: 3 EYEKFRALASKEAEKRGYLFQ---EAQHAYSAGNKAKAHELSQEGKLCGERMENYNRQAA 59
Query: 392 KKIF--ETSGRNRDTKNDLLLDLHDHGAKEAIRLLKCHLSSLSGIPTIK----YLKVILE 445
I+ + S N D +DLH EA++ ++ + + I+ +L +I+
Sbjct: 60 SAIYLYKNSQCNPDE-----IDLHGLYIDEAVQAVQQRIEN-----CIRRGDNHLHIIVG 109
Query: 446 MNDEDTTKGGRRR-RVMKLLEEESIEWTEEGNAGTILIPL 484
+ + R ++++LE++SI++ E N G I + L
Sbjct: 110 RGNHSANHVEKLRPAIVRMLEQQSIKYNSEVNEGRIYVYL 149
>sp|P17311|VG16_BPT4 DNA-packaging protein Gp16 OS=Enterobacteria phage T4 GN=16 PE=4
SV=1
Length = 164
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 366 HVQAEKLLEQGKFFYEKAREADEESNKKIFETSGRNRDTKNDLLLDLH 413
H Q + L++ K F E A+ AD + ++F T T N +L LH
Sbjct: 57 HFQQQMLMDAAKIFLETAKNADSPRHMEVFATLMGQMTTTNREILKLH 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,613,886
Number of Sequences: 539616
Number of extensions: 8497412
Number of successful extensions: 20310
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 20276
Number of HSP's gapped (non-prelim): 93
length of query: 497
length of database: 191,569,459
effective HSP length: 122
effective length of query: 375
effective length of database: 125,736,307
effective search space: 47151115125
effective search space used: 47151115125
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)