Query 010943
Match_columns 497
No_of_seqs 122 out of 244
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 17:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkc_A NEDD4-binding protein 2 99.9 2.6E-25 9E-30 200.0 6.7 119 364-485 12-135 (135)
2 3fau_A NEDD4-binding protein 2 99.7 1E-16 3.5E-21 132.1 7.8 76 409-485 2-82 (82)
3 2d9i_A NEDD4-binding protein 2 99.6 4E-16 1.4E-20 132.1 9.2 82 406-488 7-93 (96)
4 3qd7_X Uncharacterized protein 99.0 5.9E-10 2E-14 100.8 7.1 83 406-489 46-135 (137)
5 2zqe_A MUTS2 protein; alpha/be 98.7 3.5E-08 1.2E-12 81.9 8.4 73 407-485 4-82 (83)
6 2dhy_A CUE domain-containing p 97.1 0.00081 2.8E-08 54.0 6.1 47 155-204 16-62 (67)
7 1wgl_A TOLL-interacting protei 97.1 0.001 3.4E-08 52.2 6.1 48 155-205 7-54 (59)
8 1otr_A Protein CUE2; protein-p 95.1 0.032 1.1E-06 42.2 5.2 42 158-202 5-46 (49)
9 1p3q_Q VPS9P, vacuolar protein 95.0 0.0045 1.5E-07 47.9 0.2 43 157-202 12-54 (54)
10 1vg5_A RSGI RUH-014, rhomboid 92.2 0.31 1.1E-05 39.5 6.3 36 162-202 34-69 (73)
11 1ify_A HHR23A, UV excision rep 90.9 0.31 1.1E-05 36.3 4.7 38 160-199 8-45 (49)
12 2g3q_A Protein YBL047C; endocy 90.2 0.46 1.6E-05 34.0 5.0 32 167-200 11-42 (43)
13 1z96_A DNA-damage, UBA-domain 88.4 0.54 1.8E-05 32.7 4.1 32 162-198 9-40 (40)
14 1otr_A Protein CUE2; protein-p 87.7 0.36 1.2E-05 36.4 3.0 31 23-53 18-48 (49)
15 1veg_A NEDD8 ultimate buster-1 87.5 1.5 5E-05 36.5 6.8 41 158-203 30-70 (83)
16 1wji_A Tudor domain containing 87.0 0.89 3E-05 35.7 5.0 36 162-202 14-49 (63)
17 1wj7_A Hypothetical protein (R 86.9 0.85 2.9E-05 39.5 5.3 41 157-202 40-80 (104)
18 2d9s_A CBL E3 ubiquitin protei 85.7 0.5 1.7E-05 36.4 2.8 34 20-53 18-51 (53)
19 1ufz_A Hypothetical protein BA 85.4 0.88 3E-05 38.0 4.4 37 164-202 41-77 (83)
20 1wji_A Tudor domain containing 82.9 1.8 6.3E-05 33.9 5.1 36 18-53 16-51 (63)
21 2cp8_A NEXT to BRCA1 gene 1 pr 82.5 1.1 3.7E-05 34.6 3.5 33 171-204 20-52 (54)
22 2ooa_A E3 ubiquitin-protein li 82.4 0.78 2.7E-05 35.2 2.6 30 20-49 20-49 (52)
23 2di0_A Activating signal coint 82.3 1.2 4E-05 36.2 3.8 44 156-200 9-53 (71)
24 1vg5_A RSGI RUH-014, rhomboid 81.8 1.4 4.8E-05 35.7 4.1 37 17-53 35-71 (73)
25 2knz_A Ubiquilin-4; cytoplasm, 81.7 2.9 0.0001 31.4 5.7 42 159-201 10-51 (53)
26 1z96_A DNA-damage, UBA-domain 80.2 1.1 3.7E-05 31.1 2.6 28 20-47 13-40 (40)
27 2g3q_A Protein YBL047C; endocy 80.1 1 3.5E-05 32.2 2.5 29 20-48 13-41 (43)
28 1ify_A HHR23A, UV excision rep 79.3 0.95 3.3E-05 33.6 2.2 29 20-48 17-45 (49)
29 1wiv_A UBP14, ubiquitin-specif 79.1 2.4 8.2E-05 34.1 4.7 37 162-203 34-70 (73)
30 1veg_A NEDD8 ultimate buster-1 77.8 2 7E-05 35.6 3.9 34 20-53 38-71 (83)
31 1vej_A Riken cDNA 4931431F19; 77.3 1.7 5.9E-05 35.3 3.3 31 23-53 41-72 (74)
32 2dak_A Ubiquitin carboxyl-term 76.5 2.4 8.3E-05 32.8 3.9 37 162-203 14-50 (63)
33 2knz_A Ubiquilin-4; cytoplasm, 76.2 1.7 5.9E-05 32.7 2.8 31 20-50 20-51 (53)
34 1vej_A Riken cDNA 4931431F19; 75.9 3.7 0.00013 33.4 4.9 39 162-204 34-72 (74)
35 2bwb_A Ubiquitin-like protein 75.8 4.3 0.00015 29.8 4.8 28 171-199 18-45 (46)
36 1wiv_A UBP14, ubiquitin-specif 75.5 1.9 6.7E-05 34.6 3.2 34 20-53 38-71 (73)
37 2dah_A Ubiquilin-3; UBA domain 74.9 1.5 5.2E-05 33.4 2.2 32 22-53 20-52 (54)
38 1q02_A Sequestosome 1; helical 74.4 4.2 0.00014 31.1 4.5 42 156-197 6-47 (52)
39 2cpw_A CBL-interacting protein 73.7 4 0.00014 31.9 4.5 36 162-202 24-60 (64)
40 2jy5_A Ubiquilin-1; UBA, alter 73.4 2.5 8.7E-05 31.7 3.1 34 162-199 17-50 (52)
41 2ekk_A UBA domain from E3 ubiq 73.3 7.4 0.00025 28.2 5.6 37 157-200 10-46 (47)
42 2dah_A Ubiquilin-3; UBA domain 72.2 3.4 0.00012 31.4 3.6 39 162-204 14-52 (54)
43 2juj_A E3 ubiquitin-protein li 71.6 3.3 0.00011 32.1 3.4 35 20-54 16-50 (56)
44 2dkl_A Trinucleotide repeat co 71.3 23 0.00077 29.3 8.7 36 162-202 26-61 (85)
45 1wr1_B Ubiquitin-like protein 69.6 5.5 0.00019 30.8 4.3 37 163-200 20-56 (58)
46 2bwb_A Ubiquitin-like protein 69.2 2.9 9.9E-05 30.7 2.6 27 22-48 18-45 (46)
47 2oo9_A E3 ubiquitin-protein li 67.0 3.6 0.00012 30.7 2.6 30 20-49 13-42 (46)
48 2cp9_A EF-TS, EF-TSMT, elongat 66.9 4.2 0.00014 32.2 3.2 35 166-200 14-48 (64)
49 3lvj_C Sulfurtransferase TUSA; 66.6 24 0.00083 28.2 7.9 69 406-484 9-78 (82)
50 2cpw_A CBL-interacting protein 66.1 4.8 0.00016 31.5 3.4 34 20-53 28-62 (64)
51 2dak_A Ubiquitin carboxyl-term 66.0 3.2 0.00011 32.1 2.4 35 18-52 16-50 (63)
52 2jy5_A Ubiquilin-1; UBA, alter 65.7 3.8 0.00013 30.7 2.6 29 20-48 21-50 (52)
53 2dna_A Unnamed protein product 65.5 3.9 0.00013 32.7 2.8 31 23-53 31-62 (67)
54 1dv0_A DNA repair protein HHR2 65.2 4.4 0.00015 29.8 2.8 28 173-200 15-42 (47)
55 2cwb_A Chimera of immunoglobul 62.8 9.5 0.00032 33.1 5.0 39 161-200 67-105 (108)
56 1dv0_A DNA repair protein HHR2 62.0 4.7 0.00016 29.7 2.5 32 20-51 13-44 (47)
57 1wr1_B Ubiquitin-like protein 62.0 4.3 0.00015 31.4 2.4 26 23-48 29-55 (58)
58 2oo9_A E3 ubiquitin-protein li 61.4 16 0.00053 27.3 5.1 42 160-203 4-45 (46)
59 2dna_A Unnamed protein product 59.1 11 0.00039 30.0 4.4 42 160-202 19-60 (67)
60 1wgn_A UBAP1, ubiquitin associ 56.6 6.4 0.00022 31.2 2.5 34 20-53 28-61 (63)
61 2juj_A E3 ubiquitin-protein li 55.8 21 0.00072 27.6 5.2 45 159-205 6-50 (56)
62 4ae4_A Ubiquitin-associated pr 55.3 8.7 0.0003 33.5 3.5 37 13-49 7-46 (118)
63 2ooa_A E3 ubiquitin-protein li 51.7 17 0.00059 27.8 4.1 42 157-200 8-49 (52)
64 2dag_A Ubiquitin carboxyl-term 50.8 25 0.00085 28.1 5.2 34 20-53 18-52 (74)
65 3k9o_A Ubiquitin-conjugating e 50.7 20 0.00069 33.4 5.4 39 159-199 162-200 (201)
66 1whc_A RSGI RUH-027, UBA/UBX 3 49.6 10 0.00035 29.5 2.7 36 18-53 16-52 (64)
67 1jdq_A TM006 protein, hypothet 49.5 44 0.0015 27.8 6.9 67 408-484 27-95 (98)
68 2lbc_A Ubiquitin carboxyl-term 49.1 16 0.00056 31.5 4.2 35 18-52 10-45 (126)
69 2lbc_A Ubiquitin carboxyl-term 48.5 11 0.00038 32.6 3.1 32 20-51 87-118 (126)
70 2dai_A Ubadc1, ubiquitin assoc 48.1 10 0.00035 31.2 2.6 34 20-53 38-71 (83)
71 2dag_A Ubiquitin carboxyl-term 47.7 19 0.00066 28.8 4.1 40 159-203 11-51 (74)
72 3hz7_A Uncharacterized protein 46.1 46 0.0016 27.0 6.3 71 409-489 3-75 (87)
73 1wj7_A Hypothetical protein (R 44.4 12 0.00043 32.2 2.7 30 21-50 50-79 (104)
74 3e46_A Ubiquitin-conjugating e 43.3 16 0.00053 35.8 3.5 38 160-199 215-252 (253)
75 2ekk_A UBA domain from E3 ubiq 43.1 12 0.0004 27.1 2.0 28 20-48 18-45 (47)
76 1whc_A RSGI RUH-027, UBA/UBX 3 42.8 22 0.00076 27.6 3.7 30 174-203 21-51 (64)
77 2e2a_A Protein (enzyme IIA); h 42.0 77 0.0026 27.1 7.3 48 348-398 18-65 (105)
78 1wcr_A PTS system, N, N'-diace 41.7 79 0.0027 26.9 7.3 39 349-387 17-55 (103)
79 2dai_A Ubadc1, ubiquitin assoc 39.9 30 0.001 28.4 4.2 41 157-203 30-70 (83)
80 3k1s_A PTS system, cellobiose- 39.2 89 0.003 26.9 7.3 48 347-398 20-67 (109)
81 1wgn_A UBAP1, ubiquitin associ 38.9 34 0.0012 27.1 4.1 33 172-204 29-61 (63)
82 4fm3_A Uncharacterized hypothe 38.8 1.8E+02 0.0062 24.7 10.6 39 347-385 31-69 (98)
83 2cp9_A EF-TS, EF-TSMT, elongat 38.7 18 0.00062 28.6 2.6 34 16-49 14-48 (64)
84 2dkl_A Trinucleotide repeat co 38.5 22 0.00074 29.4 3.1 33 20-52 30-62 (85)
85 1wgl_A TOLL-interacting protei 38.1 20 0.00068 27.7 2.7 33 20-53 21-53 (59)
86 3l8r_A PTCA, putative PTS syst 36.6 1E+02 0.0034 27.1 7.3 49 346-398 34-82 (120)
87 1oqy_A HHR23A, UV excision rep 36.2 21 0.00072 36.7 3.3 41 9-49 163-206 (368)
88 2wb7_A PT26-6P; extra chromoso 35.3 1.1E+02 0.0039 33.0 8.7 55 331-386 469-523 (526)
89 3e7l_A Transcriptional regulat 35.3 30 0.001 26.1 3.3 31 175-206 20-50 (63)
90 2qsf_X RAD23, UV excision repa 35.0 38 0.0013 31.5 4.5 38 158-200 131-168 (171)
91 2d9s_A CBL E3 ubiquitin protei 33.8 38 0.0013 26.0 3.5 39 164-204 13-51 (53)
92 1umq_A Photosynthetic apparatu 32.6 22 0.00074 29.0 2.2 30 176-206 43-72 (81)
93 1eh2_A EPS15; calcium binding, 31.1 68 0.0023 26.5 5.2 49 154-204 8-60 (106)
94 1eto_A FIS, factor for inversi 30.9 44 0.0015 27.9 3.9 48 158-206 33-89 (98)
95 2dam_A ETEA protein; KIAA0887, 30.4 1.1E+02 0.0038 23.8 5.9 42 155-200 16-58 (67)
96 1vek_A UBP14, ubiquitin-specif 29.5 32 0.0011 28.2 2.8 34 20-53 38-72 (84)
97 2cwb_A Chimera of immunoglobul 29.3 25 0.00087 30.4 2.2 34 17-50 72-106 (108)
98 4ae4_A Ubiquitin-associated pr 29.3 27 0.00092 30.4 2.4 32 20-51 85-116 (118)
99 2crn_A Ubash3A protein; compac 28.3 52 0.0018 25.6 3.6 37 162-203 14-51 (64)
100 2chg_A Replication factor C sm 26.9 81 0.0028 27.0 5.1 48 154-201 160-208 (226)
101 2fi9_A Outer membrane protein; 26.5 55 0.0019 28.5 3.9 31 441-474 71-101 (128)
102 2crn_A Ubash3A protein; compac 25.8 42 0.0014 26.1 2.7 34 20-53 18-52 (64)
103 1je3_A EC005, hypothetical 8.6 25.7 62 0.0021 27.0 3.9 67 408-484 28-95 (97)
104 2xag_B REST corepressor 1; ami 24.8 15 0.00053 39.2 0.0 45 154-200 140-185 (482)
105 1v92_A NSFL1 cofactor P47; 3-h 24.7 1.3E+02 0.0045 20.9 5.0 38 157-199 6-43 (46)
106 3bvo_A CO-chaperone protein HS 24.0 3E+02 0.01 25.7 8.8 51 338-388 152-202 (207)
107 1sxj_B Activator 1 37 kDa subu 23.9 88 0.003 29.1 5.1 47 154-200 165-212 (323)
108 2dal_A Protein KIAA0794; FAS a 23.7 1.4E+02 0.0048 22.7 5.3 40 157-201 16-55 (62)
109 3uo3_A J-type CO-chaperone JAC 23.3 2.7E+02 0.0091 25.5 8.1 50 338-387 122-171 (181)
110 1fi6_A EH domain protein REPS1 22.9 96 0.0033 24.3 4.4 46 156-203 4-54 (92)
111 1pav_A Hypothetical protein TA 22.8 27 0.00091 27.4 1.0 66 407-482 6-72 (78)
112 1k6k_A ATP-dependent CLP prote 21.6 79 0.0027 26.6 3.9 37 158-200 25-61 (143)
113 3cpk_A Uncharacterized protein 21.1 66 0.0022 29.3 3.4 32 440-474 90-121 (150)
114 3hho_A CO-chaperone protein HS 21.0 4.1E+02 0.014 23.9 8.8 51 338-388 117-167 (174)
115 1ntc_A Protein (nitrogen regul 20.8 28 0.00096 28.1 0.8 31 175-206 52-82 (91)
116 1fpo_A HSC20, chaperone protei 20.5 4.3E+02 0.015 23.7 8.8 51 338-388 113-163 (171)
No 1
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=99.91 E-value=2.6e-25 Score=200.01 Aligned_cols=119 Identities=24% Similarity=0.288 Sum_probs=87.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCeeecCCCCHHHHHHHHHHHHHhhc----CCCCcce
Q 010943 364 GDHVQAEKLLEQGKFFYEKAREADEESNKKIFETSGRNRDTKNDLLLDLHDHGAKEAIRLLKCHLSSLS----GIPTIKY 439 (497)
Q Consensus 364 Gd~a~A~~LSeqGk~~~~karean~~AA~~If~~r~~N~~~~n~~tIDLHGLhV~EAi~iLk~~L~~l~----~~~s~~~ 439 (497)
.-+.+|++||++||.|+++|+++|++||++||+.+ |....+..+|||||++|+||+++|+..|.... ...+...
T Consensus 12 ~~~~~A~~~s~~g~~~~~~~~~~~~~Aa~~If~~~--N~~~~~~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~ 89 (135)
T 2vkc_A 12 SHMLVPRGSLQQGTLHEQKMKEANHLAAIEIFEKV--NASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPY 89 (135)
T ss_dssp -------------------CCSHHHHHHHHHHHHH--HHHHGGGTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 34578999999999999999999999999999999 87655578999999999999999999998652 1234578
Q ss_pred EEEEEecCCCCCCC-CccHHHHHHHHHHcCCceEeeCCCeEEEEEeC
Q 010943 440 LKVILEMNDEDTTK-GGRRRRVMKLLEEESIEWTEEGNAGTILIPLD 485 (497)
Q Consensus 440 LrVItG~G~HS~g~-~k~kpAV~klL~kegi~w~e~~n~GvIlI~L~ 485 (497)
++||||+|+||.++ +.++++|.++|.+.+|+|.+. ++|+++|.|.
T Consensus 90 v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~-g~G~~~V~Lk 135 (135)
T 2vkc_A 90 LSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCLKVMLK 135 (135)
T ss_dssp EEEECCSCSSSCCSCCTHHHHHHHHHHTTTCEEEEC-STTEEEEECC
T ss_pred EEEEECCCcCCCCCCchHHHHHHHHHhcCCCceeeC-CCCeEEEEeC
Confidence 99999999999987 567889999999999999776 9999999884
No 2
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=99.66 E-value=1e-16 Score=132.14 Aligned_cols=76 Identities=25% Similarity=0.279 Sum_probs=58.9
Q ss_pred eeecCCCCHHHHHHHHHHHHHhhcC----CCCcceEEEEEecCCCCCCC-CccHHHHHHHHHHcCCceEeeCCCeEEEEE
Q 010943 409 LLDLHDHGAKEAIRLLKCHLSSLSG----IPTIKYLKVILEMNDEDTTK-GGRRRRVMKLLEEESIEWTEEGNAGTILIP 483 (497)
Q Consensus 409 tIDLHGLhV~EAi~iLk~~L~~l~~----~~s~~~LrVItG~G~HS~g~-~k~kpAV~klL~kegi~w~e~~n~GvIlI~ 483 (497)
+|||||++|+||+++|++.|..+.. ..+...++||||+|+||.++ +.++++|.++|.+++|+|.+. |+|+|+|.
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e~-n~G~l~V~ 80 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCLKVM 80 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC---------CHHHHHHHHHHHTTCCEEEE-ETTEEEEE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCCCCcchHHHHHHHHHHhCCCceeeC-CCEEEEEE
Confidence 6999999999999999999987642 02347899999999999976 468889999999999999877 99999998
Q ss_pred eC
Q 010943 484 LD 485 (497)
Q Consensus 484 L~ 485 (497)
|+
T Consensus 81 l~ 82 (82)
T 3fau_A 81 LK 82 (82)
T ss_dssp C-
T ss_pred eC
Confidence 84
No 3
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=99.64 E-value=4e-16 Score=132.08 Aligned_cols=82 Identities=23% Similarity=0.251 Sum_probs=70.8
Q ss_pred CCCeeecCCCCHHHHHHHHHHHHHhhcC----CCCcceEEEEEecCCCCCCC-CccHHHHHHHHHHcCCceEeeCCCeEE
Q 010943 406 NDLLLDLHDHGAKEAIRLLKCHLSSLSG----IPTIKYLKVILEMNDEDTTK-GGRRRRVMKLLEEESIEWTEEGNAGTI 480 (497)
Q Consensus 406 n~~tIDLHGLhV~EAi~iLk~~L~~l~~----~~s~~~LrVItG~G~HS~g~-~k~kpAV~klL~kegi~w~e~~n~GvI 480 (497)
.+.+|||||++|+||++.|++.|..+.. ..+...++||||+|+||.++ +.++++|.++|++.+++|.+. +.|++
T Consensus 7 ~~~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~eg-g~Ga~ 85 (96)
T 2d9i_A 7 GQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSEI-KPGCL 85 (96)
T ss_dssp SCCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEECC-STTCE
T ss_pred CCCeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccccC-CCcEE
Confidence 4789999999999999999999986531 23457899999999999977 568889999999999999766 99999
Q ss_pred EEEeCCCC
Q 010943 481 LIPLDKVN 488 (497)
Q Consensus 481 lI~L~gi~ 488 (497)
+|.|....
T Consensus 86 ~V~L~~~~ 93 (96)
T 2d9i_A 86 KVMLKSGP 93 (96)
T ss_dssp EEECCCCC
T ss_pred EEEEccCC
Confidence 99998643
No 4
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=98.98 E-value=5.9e-10 Score=100.81 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCC-ccHHHHHHHHHHcCC--ceEee----CCCe
Q 010943 406 NDLLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKG-GRRRRVMKLLEEESI--EWTEE----GNAG 478 (497)
Q Consensus 406 n~~tIDLHGLhV~EAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~-k~kpAV~klL~kegi--~w~e~----~n~G 478 (497)
...+|||||++|+||+..|...|..+... +...++||+|+|.||.++. .++++|..+|.+... .|+.. .+.|
T Consensus 46 ~~~~LDLHG~~~~EA~~~L~~fL~~a~~~-g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~G 124 (137)
T 3qd7_X 46 QQASLNLLRQPVEECRKMVFSFIQQALAD-GLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSG 124 (137)
T ss_dssp GGGEEECTTCCHHHHHHHHHHHHHHHHHT-TCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGG
T ss_pred CCeEEECCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCE
Confidence 36899999999999999999999876543 3478999999999998765 578899999999875 46542 2899
Q ss_pred EEEEEeCCCCC
Q 010943 479 TILIPLDKVNP 489 (497)
Q Consensus 479 vIlI~L~gi~p 489 (497)
+++|.|.....
T Consensus 125 at~V~Lr~~~~ 135 (137)
T 3qd7_X 125 ACYVALRKTAQ 135 (137)
T ss_dssp EEEEEECC---
T ss_pred EEEEEEEchhh
Confidence 99999976543
No 5
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=98.72 E-value=3.5e-08 Score=81.91 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=60.4
Q ss_pred CCeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCccHHHHHHHHHHcCC--ceEeeC----CCeEE
Q 010943 407 DLLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESI--EWTEEG----NAGTI 480 (497)
Q Consensus 407 ~~tIDLHGLhV~EAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~kegi--~w~e~~----n~GvI 480 (497)
..+|||||+.++||...|...|...... +...++||+|+|. +.++.+|.++|.+... .|+... +.|++
T Consensus 4 ~~~lDLhG~~~~eA~~~l~~fl~~a~~~-g~~~v~IIHGkG~-----GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat 77 (83)
T 2zqe_A 4 VKEVDLRGLTVAEALLEVDQALEEARAL-GLSTLRLLHGKGT-----GALRQAIREALRRDKRVESFADAPPGEGGHGVT 77 (83)
T ss_dssp CCEEECTTCCHHHHHHHHHHHHHHHHHT-TCSEEEEECCSTT-----SHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEE
T ss_pred ccEEECCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCc-----hHHHHHHHHHHhcCCceeEEEEcCcccCCCEEE
Confidence 5789999999999999999999876532 3478999999997 4688899999999874 466532 57999
Q ss_pred EEEeC
Q 010943 481 LIPLD 485 (497)
Q Consensus 481 lI~L~ 485 (497)
+|.|.
T Consensus 78 ~V~Lk 82 (83)
T 2zqe_A 78 VVALR 82 (83)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99885
No 6
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.11 E-value=0.00081 Score=54.05 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=40.9
Q ss_pred cchhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 010943 155 HLQKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (497)
Q Consensus 155 ~~~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (497)
...+++.+.|-.|+- +|+..||+.||..||+||+.+++.||.++.-.
T Consensus 16 ~~~~~~v~~L~~MFP---~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~ 62 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFP---NMDYDIIECVLRANSGAVDATIDQLLQMNLES 62 (67)
T ss_dssp CCSHHHHHHHHHHCS---SSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHCC---CCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCC
Confidence 456777888999933 89999999999999999999999999998653
No 7
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.06 E-value=0.001 Score=52.16 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccccc
Q 010943 155 HLQKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAETL 205 (497)
Q Consensus 155 ~~~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~ 205 (497)
...++.-+.|-.|+- .++..+|+.||..|++||+.+++.||.++....
T Consensus 7 ~~~ee~l~~L~emFP---~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFP---NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp SSCHHHHHHHHHHCS---SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCC
T ss_pred CCCHHHHHHHHHHCC---CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCC
Confidence 344556666778832 799999999999999999999999999998764
No 8
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.13 E-value=0.032 Score=42.25 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 010943 158 KEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (497)
Q Consensus 158 ~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (497)
++=.++|..|+= .++..+||-||..|++|++.|++.||.+..
T Consensus 5 e~~v~~L~EMFP---~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 5 ESKLSILMDMFP---AISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHCS---SSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC---CCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 556678888854 699999999999999999999999999843
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=95.01 E-value=0.0045 Score=47.86 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 010943 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (497)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (497)
++++=+=|-.|+- +||.+||++||-.++|++..++|.||.||.
T Consensus 12 ~~~~~~~L~~MFP---~lD~evI~~Vl~a~~G~~~~~IdaLLqms~ 54 (54)
T 1p3q_Q 12 RKDTLNTLQNMFP---DMDPSLIEDVCIAAASRIGPCVDALLSLSE 54 (54)
T ss_dssp HHHHHHHHHHHST---TSCHHHHHHHHHHSCC--CGGGC-------
T ss_pred HHHHHHHHHHHcc---cCCHHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence 3444445677765 699999999999999999999999999873
No 10
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.16 E-value=0.31 Score=39.54 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=29.8
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (497)
+=|..| || +++.++..|..|++|+++|++.||+-..
T Consensus 34 ~~L~eM---GF--~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 34 QKLVAM---GF--DRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp HHHHTT---TC--CHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred HHHHHc---CC--CHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 345555 55 8999999999999999999999997543
No 11
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.89 E-value=0.31 Score=36.27 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 010943 160 MEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (497)
Q Consensus 160 ~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (497)
-|+-|..+..=|| ++..++..|..|++|+++|++.|+.
T Consensus 8 ~~~~i~~L~~MGF--~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGY--ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCC--CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3444444444477 9999999999999999999999987
No 12
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=90.18 E-value=0.46 Score=34.00 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=26.6
Q ss_pred HhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 167 LLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 167 MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
+..=|| +++.++..|..|++|++.|++.|++.
T Consensus 11 L~~MGF--~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 11 LSGMGF--TEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHTTTS--CHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHcCC--CHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 333366 68899999999999999999999863
No 13
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=88.39 E-value=0.54 Score=32.70 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=26.5
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHH
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLI 198 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LL 198 (497)
+-|..| || +...++..|..|++|++.|++.|+
T Consensus 9 ~~L~~m---Gf--~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 9 AQLVSM---GF--DPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHT---TC--CHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHC
Confidence 335666 56 678889999999999999999885
No 14
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=87.70 E-value=0.36 Score=36.41 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 23 FTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 23 fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
++..+|.+++..|+||+|.|.++|..+...+
T Consensus 18 ~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~~~ 48 (49)
T 1otr_A 18 ISKSKLQVHLLENNNDLDLTIGLLLKENDDK 48 (49)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhccccc
Confidence 6889999999999999999999999986543
No 15
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.51 E-value=1.5 Score=36.51 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 010943 158 KEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (497)
Q Consensus 158 ~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (497)
++.=+=|..| || ++..++..|.+|+.|+++|++.|+...+.
T Consensus 30 ee~I~~Lv~M---GF--~~~~A~~AL~~t~gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYM---GF--DTVVAEAALRVFGGNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHH---SC--CHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4444677788 55 89999999999999999999999987664
No 16
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.01 E-value=0.89 Score=35.67 Aligned_cols=36 Identities=19% Similarity=0.486 Sum_probs=29.5
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (497)
+-|..| || ++..++..|..|++|++.|++.||.-..
T Consensus 14 ~~L~~M---GF--~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 14 KHITEM---GF--SKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp HHHHTT---TC--CHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred HHHHHc---CC--CHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 345555 66 7888899999999999999999998654
No 17
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.93 E-value=0.85 Score=39.50 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 010943 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (497)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (497)
.++| +.|.-|- ..+.+.+|.+|-.|++|+.+|++.||+--.
T Consensus 40 eekV-k~L~Emt----G~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 40 EEKV-KQLIDIT----GKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHH-HHHHHHT----CCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred HHHH-HHHHHhh----CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3444 6777774 488999999999999999999999997653
No 18
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=85.72 E-value=0.5 Score=36.36 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
+-+|+-+++-.|...|++|++.|+.||......+
T Consensus 18 ~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~~~~ 51 (53)
T 2d9s_A 18 SQGYSYQDIQKALVIAHNNIEMAKNILREFSGPS 51 (53)
T ss_dssp HHTCCHHHHHHHHHHTTTCHHHHHHHHHHHTSCS
T ss_pred HcCCCHHHHHHHHHHhcCCHHHHHHHHHHhcccC
Confidence 6679999999999999999999999998776543
No 19
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=85.41 E-value=0.88 Score=37.96 Aligned_cols=37 Identities=22% Similarity=0.536 Sum_probs=30.4
Q ss_pred HHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 010943 164 LFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (497)
Q Consensus 164 L~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (497)
+-..||| -++...++++.=.|.||++||||.+|+.+.
T Consensus 41 iR~VlGd--sV~e~~Lv~ailk~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 41 MREVLGD--AVPDDILTEAILKHKFDVQKALSVVLEQDG 77 (83)
T ss_dssp HHHHTTT--TSCHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHcc--cCCHHHHHHHHHHhcCCHHHHHHHHHhccc
Confidence 3456888 577777788888899999999999998765
No 20
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.91 E-value=1.8 Score=33.85 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=31.1
Q ss_pred ccCCccCHHHHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 18 LNGSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 18 L~gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
|..-+|+-+++..|++..++|++.|.+.|..-..+.
T Consensus 16 L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 16 ITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred HHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 336779999999999999999999999999776544
No 21
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.49 E-value=1.1 Score=34.59 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=27.8
Q ss_pred ccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 010943 171 GFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (497)
Q Consensus 171 gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (497)
|| -|...-..+|.++||||+++++.||.+..-+
T Consensus 20 GF-~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 20 GF-CDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp TC-CCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred CC-CcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 45 3677888999999999999999999887554
No 22
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=82.43 E-value=0.78 Score=35.17 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=27.9
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccc
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDK 49 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~ 49 (497)
+-+||-+++-.|...|++|++.|+.||...
T Consensus 20 ~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 20 GEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 778999999999999999999999999764
No 23
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.30 E-value=1.2 Score=36.19 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHhcCcc-ccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 156 LQKEMEDFLFKLLGEGF-QLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 156 ~~~d~E~FL~~MLG~gf-~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
...++++= .+++-|=| .|+.+.|+.+|..|++|||..+..||+=
T Consensus 9 ~~~~l~s~-I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 9 CGVELDSL-ISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp SSHHHHHH-HHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred cHHHHHHH-HHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 34444432 34445556 7999999999999999999999999984
No 24
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=81.82 E-value=1.4 Score=35.69 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=31.5
Q ss_pred hccCCccCHHHHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 17 ALNGSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 17 ~L~gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
-|..=+|+-+++..|++.+++|++.|.++|.+-+++.
T Consensus 35 ~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 35 KLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSCSS
T ss_pred HHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 3335569999999999999999999999999876653
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=81.70 E-value=2.9 Score=31.41 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccc
Q 010943 159 EMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHS 201 (497)
Q Consensus 159 d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s 201 (497)
+.++-|-.+..=||. ++..++.+|..|+.|+++|++.|+...
T Consensus 10 ~~~~~l~~L~~MGF~-~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 10 RFQQQLEQLNSMGFI-NREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHTTTCC-CHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 344445445444552 788999999999999999999999753
No 26
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=80.24 E-value=1.1 Score=31.08 Aligned_cols=28 Identities=29% Similarity=0.164 Sum_probs=25.1
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhc
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLC 47 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~ 47 (497)
.-+|+-+++..|+...++|++.|.+.|.
T Consensus 13 ~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 13 SMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4469999999999999999999999874
No 27
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=80.14 E-value=1 Score=32.17 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhcc
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCD 48 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~ 48 (497)
.-+|+-+++..|++..++|++.|.+.|.+
T Consensus 13 ~MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 13 GMGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp TTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 55699999999999999999999999964
No 28
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=79.29 E-value=0.95 Score=33.61 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=26.9
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhcc
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCD 48 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~ 48 (497)
.-+|+-+++..|++.+++|++.|.+.|.+
T Consensus 17 ~MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 17 SMGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 55699999999999999999999999986
No 29
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=79.12 E-value=2.4 Score=34.08 Aligned_cols=37 Identities=32% Similarity=0.589 Sum_probs=30.6
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (497)
+=|..| || ++..++..|..||.|++.|++.|++....
T Consensus 34 ~~L~~M---GF--~~~~a~~AL~~t~~nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 34 DTLLSF---GF--AEDVARKALKASGGDIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHH---TC--CHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred HHHHHc---CC--CHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 445566 56 78999999999999999999999986543
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.76 E-value=2 Score=35.65 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=29.9
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
.=+|+-+++..|++.+++|++.|.|.|..-++..
T Consensus 38 ~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~i 71 (83)
T 1veg_A 38 YMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSL 71 (83)
T ss_dssp HHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 3349999999999999999999999999877743
No 31
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.31 E-value=1.7 Score=35.32 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=26.9
Q ss_pred cC-HHHHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 23 FT-MQEIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 23 fS-l~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
|+ -+.+..|.+.++||++.|.|+|....+.+
T Consensus 41 F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 41 FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 64 67779999999999999999999877654
No 32
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.54 E-value=2.4 Score=32.84 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=30.6
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (497)
+=|..| || ++..++..|-.|++|++.|++.||.....
T Consensus 14 ~~L~~M---GF--~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 14 TTIVSM---GF--SRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHH---TC--CHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred HHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 445556 56 68999999999999999999999986553
No 33
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=76.18 E-value=1.7 Score=32.71 Aligned_cols=31 Identities=23% Similarity=0.102 Sum_probs=27.1
Q ss_pred CCcc-CHHHHHHHHHHhCCCchhhhhhhcccc
Q 010943 20 GSVF-TMQEIALACRNAGRNPDLAGESLCDKQ 50 (497)
Q Consensus 20 gs~f-Sl~~ia~Ay~~A~~d~~~A~eiL~~~~ 50 (497)
.=+| .-+.+..|++.++||++.|.++|....
T Consensus 20 ~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 20 SMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp TTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4458 888899999999999999999998754
No 34
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.88 E-value=3.7 Score=33.37 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=31.2
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (497)
+=|..| || -++..++.+|..++.||++|++.|+..-+.+
T Consensus 34 ~qL~eM---GF-~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 34 EELKAL---GF-ANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHH---TC-CCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHHc---CC-CcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 345566 66 5688999999999999999999999865443
No 35
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=75.80 E-value=4.3 Score=29.78 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.9
Q ss_pred ccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 010943 171 GFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (497)
Q Consensus 171 gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (497)
|| -+...++.+|..|+.||++|++.|+.
T Consensus 18 GF-~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 18 GF-FDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp TC-CCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred CC-CcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 66 46788899999999999999999985
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=75.52 E-value=1.9 Score=34.61 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=30.2
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
.-+|+-+++..|++..++|++.|.+.|.+-++++
T Consensus 38 ~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 38 SFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp HHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 4459999999999999999999999999877654
No 37
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=74.94 E-value=1.5 Score=33.35 Aligned_cols=32 Identities=25% Similarity=0.153 Sum_probs=27.0
Q ss_pred ccCHHH-HHHHHHHhCCCchhhhhhhccccCCC
Q 010943 22 VFTMQE-IALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 22 ~fSl~~-ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
+|+=++ +..|...++||++.|.++|....+..
T Consensus 20 GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 20 GFLNREANLQALIATGGDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCSS
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 376665 68999999999999999999876644
No 38
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=74.44 E-value=4.2 Score=31.14 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHH
Q 010943 156 LQKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKL 197 (497)
Q Consensus 156 ~~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~L 197 (497)
....+++=|-.||.=||.=.=+-....|..+.|||-++||.|
T Consensus 6 ~D~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 6 ADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp SCHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 355688889999999999999999999999999999999986
No 39
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.71 E-value=4 Score=31.92 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=29.6
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCC-cHHHHHHHHHcccc
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGY-DMQKSMSKLIDHSA 202 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGy-Dv~ks~d~LLd~s~ 202 (497)
+=|..| || +...++..|-.||. |++.|++-||+...
T Consensus 24 ~~L~~M---GF--~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 24 DVLLSM---GF--PRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp HHHHHH---TC--CHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHc---CC--CHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 445566 55 77999999999998 99999999997653
No 40
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=73.36 E-value=2.5 Score=31.68 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=27.5
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (497)
+-|..| || -++..++.+|..||.|+++|++.|+.
T Consensus 17 ~~L~~M---GF-~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 17 EQLSAM---GF-LNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHT---TC-CCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHc---CC-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 345555 44 17889999999999999999999985
No 41
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.29 E-value=7.4 Score=28.22 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
.+.+ +=|..| | .+...++..|-.|| |++.|++.|++.
T Consensus 10 ~~~v-~~L~~M---G--F~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 10 QQQL-QQLMDM---G--FTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp HHHH-HHHHHH---H--CCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred HHHH-HHHHHc---C--CCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 3444 445556 4 46688999999998 999999999864
No 42
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=72.16 E-value=3.4 Score=31.39 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=30.2
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (497)
+-|..| ||. +...++.+|..|+.||++|++.|+..-..+
T Consensus 14 ~~L~~M---GF~-d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 14 EQLRSM---GFL-NREANLQALIATGGDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp HHHHHH---TCC-CHHHHHHHHHHHTSCHHHHHHHHHHHSCSS
T ss_pred HHHHHc---CCC-cHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 556777 552 445678999999999999999999765443
No 43
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=71.63 E-value=3.3 Score=32.07 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccCCCC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANAS 54 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~s 54 (497)
+-+||-+++-.|...|+-|++.|..||....-.+|
T Consensus 16 smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~~~~~ 50 (56)
T 2juj_A 16 SQGYSYQDIQKALVIAQNNIEMAKNILREFVSISS 50 (56)
T ss_dssp TTTCCHHHHHHHHHHTTTCSHHHHHHHHHSCCCCC
T ss_pred HcCCCHHHHHHHHHHhcccHHHHHHHHHHHHccCC
Confidence 66799999999999999999999999998866543
No 44
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=71.30 E-value=23 Score=29.27 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=29.8
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (497)
+=|..| || ++..++..|-.|+.|++.|++.|++...
T Consensus 26 ~qL~~M---GF--~~~~a~~AL~~~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 26 KQLTDM---GF--PREPAEEALKSNNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHH---TC--CHHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred HHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHHHCcC
Confidence 334555 55 8899999999999999999999998764
No 45
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=69.58 E-value=5.5 Score=30.76 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=28.5
Q ss_pred HHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 163 FLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 163 FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
-|-.+.-=|| -+...++.+|..++.||++|+|.|+.-
T Consensus 20 qi~~L~~MGF-~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 20 QLRQLNDMGF-FDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHTC-CCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHcCC-CcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3333333367 568889999999999999999999863
No 46
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=69.16 E-value=2.9 Score=30.72 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.8
Q ss_pred ccC-HHHHHHHHHHhCCCchhhhhhhcc
Q 010943 22 VFT-MQEIALACRNAGRNPDLAGESLCD 48 (497)
Q Consensus 22 ~fS-l~~ia~Ay~~A~~d~~~A~eiL~~ 48 (497)
+|+ -+.+..|.+.++||++.|.|.|.+
T Consensus 18 GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 18 GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 365 455799999999999999999974
No 47
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=67.00 E-value=3.6 Score=30.74 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=27.4
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccc
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDK 49 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~ 49 (497)
+-+||-+++-.|.-.|+-|++.|+.||...
T Consensus 13 s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 13 SQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 456999999999999999999999999764
No 48
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=66.87 E-value=4.2 Score=32.22 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.6
Q ss_pred HHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 166 KLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 166 ~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
+.|=+-...+|.-.+..|-.|++||++|++.|-..
T Consensus 14 k~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 14 MKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34445556788999999999999999999998644
No 49
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=66.60 E-value=24 Score=28.20 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=50.7
Q ss_pred CCCeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCccHHHHHHHHHHcCCceEee-CCCeEEEEEe
Q 010943 406 NDLLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEE-GNAGTILIPL 484 (497)
Q Consensus 406 n~~tIDLHGLhV~EAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~kegi~w~e~-~n~GvIlI~L 484 (497)
...+||+-|+.==+-+-.+++.|..+.. ...|.|++-. .. -..-|.+||++.|+++... ...|.+.|.|
T Consensus 9 ~~~~lD~rGl~CP~Pvl~~kkal~~l~~---G~~l~V~~dd------~~-a~~di~~~~~~~G~~~~~~~~~~~~~~i~I 78 (82)
T 3lvj_C 9 PDHTLDALGLRCPEPVMMVRKTVRNMQP---GETLLIIADD------PA-TTRDIPGFCTFMEHELVAKETDGLPYRYLI 78 (82)
T ss_dssp CSEEEECTTCCTTHHHHHHHHHHHTSCT---TCEEEEEECC------TT-HHHHHHHHHHHTTCEEEEEECSSSSEEEEE
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHhCCC---CCEEEEEECC------cc-HHHHHHHHHHHCCCEEEEEEecCCEEEEEE
Confidence 3578999999999888889998887642 3679999732 22 2345889999999988654 3566665555
No 50
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=66.06 E-value=4.8 Score=31.47 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=29.7
Q ss_pred CCccCHHHHHHHHHHhCC-CchhhhhhhccccCCC
Q 010943 20 GSVFTMQEIALACRNAGR-NPDLAGESLCDKQANA 53 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~-d~~~A~eiL~~~~~~~ 53 (497)
.-+|+-+++..|++..++ |++.|.+.|.+-.+++
T Consensus 28 ~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~ 62 (64)
T 2cpw_A 28 SMGFPRARAQKALASTGGRSVQTACDWLFSHSGPS 62 (64)
T ss_dssp HHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCC
T ss_pred HcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Confidence 445999999999999998 9999999999876654
No 51
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.00 E-value=3.2 Score=32.15 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=29.6
Q ss_pred ccCCccCHHHHHHHHHHhCCCchhhhhhhccccCC
Q 010943 18 LNGSVFTMQEIALACRNAGRNPDLAGESLCDKQAN 52 (497)
Q Consensus 18 L~gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~ 52 (497)
|..-+|+-+++..|++..++|++.|.+.|..-.++
T Consensus 16 L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 16 IVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred HHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 33555999999999999999999999999875443
No 52
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=65.73 E-value=3.8 Score=30.72 Aligned_cols=29 Identities=21% Similarity=0.078 Sum_probs=25.4
Q ss_pred CCcc-CHHHHHHHHHHhCCCchhhhhhhcc
Q 010943 20 GSVF-TMQEIALACRNAGRNPDLAGESLCD 48 (497)
Q Consensus 20 gs~f-Sl~~ia~Ay~~A~~d~~~A~eiL~~ 48 (497)
.=+| +-+.+..|+..++||++.|.+.|.+
T Consensus 21 ~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 21 AMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4448 8888899999999999999999975
No 53
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=65.53 E-value=3.9 Score=32.73 Aligned_cols=31 Identities=16% Similarity=-0.030 Sum_probs=25.5
Q ss_pred cCHH-HHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 23 FTMQ-EIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 23 fSl~-~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
|+=+ .+..|.+.++||++.|.|+|....++.
T Consensus 31 F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 31 FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 5444 448999999999999999999876653
No 54
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=65.17 E-value=4.4 Score=29.84 Aligned_cols=28 Identities=7% Similarity=0.205 Sum_probs=25.1
Q ss_pred ccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 173 QLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 173 ~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
..++..++++|-.||.|++.|++-|+..
T Consensus 15 GF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 15 GFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp TCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4688999999999999999999999754
No 55
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=62.85 E-value=9.5 Score=33.07 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=31.4
Q ss_pred HHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 161 EDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 161 E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
++=|-+|.-=|| -+...++.+|-.|+.||++|+|.|+..
T Consensus 67 ~~qL~qL~eMGF-~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 67 QPQLQQLRDMGI-QDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHTTTC-CCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 445555555567 567899999999999999999999964
No 56
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=62.00 E-value=4.7 Score=29.68 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=28.6
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQA 51 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 51 (497)
.-+|+-..+-.||...++|+++|++.|.+...
T Consensus 13 ~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 13 ALGFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp TTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 66799999999999999999999999987544
No 57
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=61.96 E-value=4.3 Score=31.37 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.9
Q ss_pred cC-HHHHHHHHHHhCCCchhhhhhhcc
Q 010943 23 FT-MQEIALACRNAGRNPDLAGESLCD 48 (497)
Q Consensus 23 fS-l~~ia~Ay~~A~~d~~~A~eiL~~ 48 (497)
|+ -+.+..|.+.++||++.|.|+|..
T Consensus 29 F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 29 FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 65 567799999999999999999985
No 58
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=61.40 E-value=16 Score=27.34 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 010943 160 MEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (497)
Q Consensus 160 ~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (497)
.|.-+-.....|| |+.-|++.|..+..||+.|-+-|+.+...
T Consensus 4 ~e~~I~~L~s~Gf--~~~~~~rAL~ia~Nnie~A~nIL~ef~~~ 45 (46)
T 2oo9_A 4 LSSEIENLMSQGY--SYQDIQKALVIAQNNIEMAKNILREFAAA 45 (46)
T ss_dssp HHHHHHHHHHTTB--CHHHHHHHHHHTTTCHHHHHHHHHHHCCB
T ss_pred hHHHHHHHHHcCC--CHHHHHHHHHHhhccHHHHHHHHHHhccC
Confidence 3455556666676 68899999999999999999999987643
No 59
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.13 E-value=11 Score=30.00 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccc
Q 010943 160 MEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSA 202 (497)
Q Consensus 160 ~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~ 202 (497)
-++-|-.|.-=|| -+..-+...|..|+.||++|+|.|+..-.
T Consensus 19 y~~ql~qL~~MGF-~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 19 FSKEMECLQAMGF-VNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp THHHHHHHHHHTC-CCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCC-CcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3444555555577 67778889999999999999999997643
No 60
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=56.57 E-value=6.4 Score=31.21 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
+=+||-+++..|...-|+|++.|+|-|++-.+++
T Consensus 28 sMGFs~~qA~kALKat~~NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 28 NMGYSYECVLRAMKKKGENIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCCC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 4569999999999999999999999999877754
No 61
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=55.82 E-value=21 Score=27.62 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccccc
Q 010943 159 EMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAETL 205 (497)
Q Consensus 159 d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~ 205 (497)
-.|+-+-.....|| |+.-+++.|..+..||+.|-+-||.|.....
T Consensus 6 p~e~~Ia~L~smGf--sr~da~~AL~ia~Ndv~~AtNiLlEf~~~~~ 50 (56)
T 2juj_A 6 QLSSEIENLMSQGY--SYQDIQKALVIAQNNIEMAKNILREFVSISS 50 (56)
T ss_dssp HHHHHHHHHHTTTC--CHHHHHHHHHHTTTCSHHHHHHHHHSCCCCC
T ss_pred CChHHHHHHHHcCC--CHHHHHHHHHHhcccHHHHHHHHHHHHccCC
Confidence 34555666667777 7899999999999999999999999987653
No 62
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=55.30 E-value=8.7 Score=33.53 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=30.3
Q ss_pred hhhhhcc---CCccCHHHHHHHHHHhCCCchhhhhhhccc
Q 010943 13 IEEKALN---GSVFTMQEIALACRNAGRNPDLAGESLCDK 49 (497)
Q Consensus 13 ~~~k~L~---gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~ 49 (497)
.+...|+ +-+|+...+..|...-|.|++.|-+.|..-
T Consensus 7 ~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 7 SERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 3435555 667999999999999999999999999864
No 63
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=51.71 E-value=17 Score=27.79 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
.+.+|+-+-+..+-|| |+.-+.+.|.++..||+.|-.-||.+
T Consensus 8 ~~~~~~~Ia~Lm~mGF--sr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGY--AFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp ---CHHHHHHHHHTTC--CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHcCC--CHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4456677777777777 79999999999999999999999987
No 64
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.77 E-value=25 Score=28.14 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=29.4
Q ss_pred CCccCHHHHHHHHHHhCC-CchhhhhhhccccCCC
Q 010943 20 GSVFTMQEIALACRNAGR-NPDLAGESLCDKQANA 53 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~-d~~~A~eiL~~~~~~~ 53 (497)
.-+|+-+.+..|++..++ |++.|.+.|.+-.+++
T Consensus 18 ~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 18 EMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp HHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred HcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 445999999999999997 8999999999876654
No 65
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=50.70 E-value=20 Score=33.36 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 010943 159 EMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (497)
Q Consensus 159 d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (497)
+.|+-+.++..-| .+.+-++.+|-.|++|++.|++.||+
T Consensus 162 ~~eekV~~l~~MG--f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 162 EYTKKIENLCAMG--FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHHHTTT--CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHcC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4455555554444 46788889999999999999999986
No 66
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.64 E-value=10 Score=29.49 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=30.8
Q ss_pred ccCCccCHHHHHHHHHHh-CCCchhhhhhhccccCCC
Q 010943 18 LNGSVFTMQEIALACRNA-GRNPDLAGESLCDKQANA 53 (497)
Q Consensus 18 L~gs~fSl~~ia~Ay~~A-~~d~~~A~eiL~~~~~~~ 53 (497)
|-.-+|+-+.+..|++.. ++|++.|.+.|.+-.+++
T Consensus 16 L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 16 LIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp HHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 336679999999999999 699999999999876654
No 67
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=49.50 E-value=44 Score=27.85 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=48.7
Q ss_pred CeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCccHHHHHHHHHHcCCceEeeC-C-CeEEEEEe
Q 010943 408 LLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEEG-N-AGTILIPL 484 (497)
Q Consensus 408 ~tIDLHGLhV~EAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~kegi~w~e~~-n-~GvIlI~L 484 (497)
.+||+-|+.==.-+-.+++.|..+.. ...|.|++-. ..+ ..-|.+||++.|+.+.... . .|.+.|.|
T Consensus 27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---Ge~L~Vl~dd------~~a-~~dI~~~~~~~G~~v~~~e~~~~g~~~i~I 95 (98)
T 1jdq_A 27 KTLDVRGEVCPVPDVETKRALQNMKP---GEILEVWIDY------PMS-KERIPETVKKLGHEVLEIEEVGPSEWKIYI 95 (98)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHTCCT---TCEEEEEESS------CTH-HHHHHHHHHHSSCCEEEEEECSSSCEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhCCC---CCEEEEEECC------ccH-HHHHHHHHHHCCCEEEEEEEecCCEEEEEE
Confidence 56999999988888888888887642 3679998632 222 3458899999999987643 3 57555554
No 68
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=49.10 E-value=16 Score=31.54 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=29.3
Q ss_pred ccCCccCHHHHHHHHHHhCC-CchhhhhhhccccCC
Q 010943 18 LNGSVFTMQEIALACRNAGR-NPDLAGESLCDKQAN 52 (497)
Q Consensus 18 L~gs~fSl~~ia~Ay~~A~~-d~~~A~eiL~~~~~~ 52 (497)
|-.-+|+...+..|.+.-++ |++.|.+.|..-...
T Consensus 10 L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 10 LAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp HHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 33678999999999999965 999999999876554
No 69
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=48.53 E-value=11 Score=32.60 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=28.6
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQA 51 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 51 (497)
.-+|+-+++..|++..++|++.|.+.|.+..+
T Consensus 87 ~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 87 SMGFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp HHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 55599999999999999999999999987655
No 70
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.10 E-value=10 Score=31.21 Aligned_cols=34 Identities=15% Similarity=-0.008 Sum_probs=29.9
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
.-+|+-+.+..|++..++|++.|.+.|.+-.+++
T Consensus 38 ~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 38 EMGFPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp HHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred HcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 4559999999999999999999999999876654
No 71
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.72 E-value=19 Score=28.79 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHhcCC-cHHHHHHHHHccccc
Q 010943 159 EMEDFLFKLLGEGFQLSRDVIREVLDSCGY-DMQKSMSKLIDHSAE 203 (497)
Q Consensus 159 d~E~FL~~MLG~gf~L~~~vIr~VL~~cGy-Dv~ks~d~LLd~s~~ 203 (497)
++=+=|..| || ++..++..|-.||. |++.|++.||.....
T Consensus 11 ~~v~~L~~M---GF--~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 11 SVIIQLVEM---GF--PMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHH---SC--CHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHc---CC--CHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 333445566 55 58999999999996 899999999987654
No 72
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=46.08 E-value=46 Score=27.05 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=51.2
Q ss_pred eeecCCCCHHHHHHHHHHHHHhhc-CCCCcceEEEEEecCCCCCCCCccHHHHHHHHHHcCCceEeeC-CCeEEEEEeCC
Q 010943 409 LLDLHDHGAKEAIRLLKCHLSSLS-GIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEEG-NAGTILIPLDK 486 (497)
Q Consensus 409 tIDLHGLhV~EAi~iLk~~L~~l~-~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~kegi~w~e~~-n~GvIlI~L~g 486 (497)
+||+-|+.==.-+-.+++.|..+. . ...|.|++-.. . -..-|.+||++.|+.+.... ..|.+.|.|..
T Consensus 3 ~lD~rGl~CP~Pvl~~kkal~~l~~~---G~~L~V~~dd~------~-a~~dI~~~~~~~G~~v~~~~~~~g~~~i~I~K 72 (87)
T 3hz7_A 3 TIDALGQVCPIPVIRAKKALAELGEA---GGVVTVLVDND------I-SRQNLQKMAEGMGYQSEYLEKDNGVIEVTIVA 72 (87)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTTGGG---CCEEEEEESSH------H-HHHHHHHHHHHHTCEEEEEECGGGCEEEEEES
T ss_pred EEEcCCCCCCHHHHHHHHHHHhccCC---CCEEEEEECCc------c-HHHHHHHHHHHCCCEEEEEEecCCEEEEEEEE
Confidence 699999988888888888888763 2 26899987321 1 23358899999999886543 67877777755
Q ss_pred CCC
Q 010943 487 VNP 489 (497)
Q Consensus 487 i~p 489 (497)
..+
T Consensus 73 g~~ 75 (87)
T 3hz7_A 73 GEG 75 (87)
T ss_dssp CC-
T ss_pred CCC
Confidence 443
No 73
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.40 E-value=12 Score=32.22 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=27.0
Q ss_pred CccCHHHHHHHHHHhCCCchhhhhhhcccc
Q 010943 21 SVFTMQEIALACRNAGRNPDLAGESLCDKQ 50 (497)
Q Consensus 21 s~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~ 50 (497)
++||-+++-.|+.++++|++.|-+.|.+-.
T Consensus 50 tG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 50 TGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 359999999999999999999999998654
No 74
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=43.26 E-value=16 Score=35.80 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 010943 160 MEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (497)
Q Consensus 160 ~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (497)
.++.+..+.-- ..+.+-++.+|..|++|++.|++.||+
T Consensus 215 ~~~~v~~l~~m--gf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 215 YTKKIENLCAA--GFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34444444333 456788888999999999999999986
No 75
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.07 E-value=12 Score=27.14 Aligned_cols=28 Identities=25% Similarity=0.112 Sum_probs=24.7
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhcc
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCD 48 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~ 48 (497)
.-+|+-+.+..|++..| |++.|.+.|.+
T Consensus 18 ~MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 18 DMGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 55599999999999996 99999999864
No 76
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.78 E-value=22 Score=27.56 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHhcC-CcHHHHHHHHHccccc
Q 010943 174 LSRDVIREVLDSCG-YDMQKSMSKLIDHSAE 203 (497)
Q Consensus 174 L~~~vIr~VL~~cG-yDv~ks~d~LLd~s~~ 203 (497)
.++..++..|-.|| .|++.|++.||+....
T Consensus 21 F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 21 FPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 45799999999995 9999999999987554
No 77
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=41.97 E-value=77 Score=27.09 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010943 348 GTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIFETS 398 (497)
Q Consensus 348 ~~Rne~f~kA~~AY~~Gd~a~A~~LSeqGk~~~~karean~~AA~~If~~r 398 (497)
-.-+.++-+|-++.+.||.+.|..+.++|+.....+...+ .+-|-..-
T Consensus 18 G~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Q---t~liq~Ea 65 (105)
T 2e2a_A 18 GDARSKLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQ---TGMLAREA 65 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 3334455568899999999999999999998766665554 34454444
No 78
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=41.71 E-value=79 Score=26.94 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 010943 349 TMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREAD 387 (497)
Q Consensus 349 ~Rne~f~kA~~AY~~Gd~a~A~~LSeqGk~~~~karean 387 (497)
.-+.++-+|-++.+.||.+.|..+.++|+.....+.+.+
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Q 55 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQ 55 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455568899999999999999999998766666554
No 79
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.89 E-value=30 Score=28.39 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 010943 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (497)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (497)
.+.+ +=|..| | .+...++..|-.|+.|++.|++.|+.....
T Consensus 30 e~~i-~~L~~M---G--F~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 30 EAAL-RQLTEM---G--FPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp HHHH-HHHHHH---T--CCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred HHHH-HHHHHc---C--CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 3334 445566 4 466899999999999999999999987543
No 80
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=39.24 E-value=89 Score=26.90 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010943 347 RGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIFETS 398 (497)
Q Consensus 347 ~~~Rne~f~kA~~AY~~Gd~a~A~~LSeqGk~~~~karean~~AA~~If~~r 398 (497)
...|. ++-+|-++.+.||.+.|..+.++|+....++.+.+- +-|-..-
T Consensus 20 G~Ars-~~~eAl~~Ak~gdfe~A~~~l~eA~~~l~~AH~~QT---~Liq~Ea 67 (109)
T 3k1s_A 20 GNARS-FAMEALQFAKQGKMAEADEAMVKAKEAINEAHHFQT---ELIQSEA 67 (109)
T ss_dssp HHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 34444 455588888999999999999999887776665553 4444333
No 81
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.92 E-value=34 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=27.9
Q ss_pred cccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 010943 172 FQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (497)
Q Consensus 172 f~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (497)
+..+....+-.|..||-||++|+|-|....+-+
T Consensus 29 MGFs~~qA~kALKat~~NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 29 MGYSYECVLRAMKKKGENIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 356788899999999999999999998765543
No 82
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=38.76 E-value=1.8e+02 Score=24.69 Aligned_cols=39 Identities=21% Similarity=0.043 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q 010943 347 RGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKARE 385 (497)
Q Consensus 347 ~~~Rne~f~kA~~AY~~Gd~a~A~~LSeqGk~~~~kare 385 (497)
+..-...|.+|..|...++...|.+|++++..-.+++..
T Consensus 31 l~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeA 69 (98)
T 4fm3_A 31 LKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAES 69 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHH
Confidence 455567799999999999999999999999876666553
No 83
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=38.67 E-value=18 Score=28.58 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=27.9
Q ss_pred hhcc-CCccCHHHHHHHHHHhCCCchhhhhhhccc
Q 010943 16 KALN-GSVFTMQEIALACRNAGRNPDLAGESLCDK 49 (497)
Q Consensus 16 k~L~-gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~ 49 (497)
+.|. =+..++.|.-.|..+++||++.|-++|...
T Consensus 14 k~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 14 MKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444 334789999999999999999999999754
No 84
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.51 E-value=22 Score=29.40 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=28.8
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccCC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQAN 52 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~ 52 (497)
.-+|+-+.+..|++..++|++.|.+.|.+-..+
T Consensus 30 ~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 30 DMGFPREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 445999999999999999999999999986554
No 85
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.13 E-value=20 Score=27.67 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=29.9
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccCCC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQANA 53 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~~~ 53 (497)
-. ++.+.|.++|..-+||++.|-+.|..|+...
T Consensus 21 P~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 21 PN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp SS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred CC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 45 7889999999999999999999999998865
No 86
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=36.56 E-value=1e+02 Score=27.11 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010943 346 YRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADEESNKKIFETS 398 (497)
Q Consensus 346 h~~~Rne~f~kA~~AY~~Gd~a~A~~LSeqGk~~~~karean~~AA~~If~~r 398 (497)
-...|. ++-+|-++.+.||.+.|..+.++|+....++...+- +-|-..-
T Consensus 34 aG~ARS-~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~QT---~Liq~EA 82 (120)
T 3l8r_A 34 SGNARS-IVHEAFDAMREKNYILAEQKLQEANDELLKAHQAQT---DLLQEYA 82 (120)
T ss_dssp HHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 344454 455588888999999999999999887766665543 4444433
No 87
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=36.20 E-value=21 Score=36.68 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=32.5
Q ss_pred CCCchhhhhcc---CCccCHHHHHHHHHHhCCCchhhhhhhccc
Q 010943 9 LNYDIEEKALN---GSVFTMQEIALACRNAGRNPDLAGESLCDK 49 (497)
Q Consensus 9 ~~~d~~~k~L~---gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~ 49 (497)
..+++.+..+. .=+|+-+++..|.+.+++|++.|.|+|+.-
T Consensus 163 ~~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 163 VTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp CCTTTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred cCCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34444445555 555999999999999999999999999864
No 88
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=35.35 E-value=1.1e+02 Score=32.97 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Q 010943 331 VEEDSFQHLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREA 386 (497)
Q Consensus 331 ~~d~~Y~~~R~~A~eh~~~Rne~f~kA~~AY~~Gd~a~A~~LSeqGk~~~~karea 386 (497)
++-.+|..+-..|.. ...-..||.+|++-+--|..+.|..|..+++.+.+.++++
T Consensus 469 dd~~~v~~~~~~ak~-yE~aGDyy~~AA~k~~yG~~eqAe~l~~~A~~~~~~~~eY 523 (526)
T 2wb7_A 469 DDYQMFLNYLNAAKK-HEMAGDYYVNAARKALNGDLEQAKIDAEKAKEYSNLAKEY 523 (526)
T ss_dssp CSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhh-hhhccHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhHhhc
Confidence 345667777778888 5777778888888888999999999999999999888875
No 89
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.34 E-value=30 Score=26.07 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcCCcHHHHHHHHHcccccccc
Q 010943 175 SRDVIREVLDSCGYDMQKSMSKLIDHSAETLG 206 (497)
Q Consensus 175 ~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~~ 206 (497)
.+.+|+++|.+||+++.++-. +|.+|-.++.
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~-~LGisr~tL~ 50 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAE-EIGIDLSNLY 50 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHH-HHTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHH-HHCcCHHHHH
Confidence 478899999999999988765 6777776654
No 90
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=35.04 E-value=38 Score=31.52 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 158 KEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 158 ~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
+++=+=|+.| || +++.|.+||-.|+.|++.+...||..
T Consensus 131 ~eaI~rL~~m---GF--~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 131 DQAISRLCEL---GF--ERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHTT---TC--CHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHc---CC--CHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3444567777 44 99999999999999999999999974
No 91
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.82 E-value=38 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=32.9
Q ss_pred HHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 010943 164 LFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (497)
Q Consensus 164 L~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (497)
+-+..+.|| ++.-+.+.|.++..||+.|-+-|+.+....
T Consensus 13 I~~L~~lGF--~r~~ai~AL~~a~nnve~Aa~iL~ef~~~~ 51 (53)
T 2d9s_A 13 IERLMSQGY--SYQDIQKALVIAHNNIEMAKNILREFSGPS 51 (53)
T ss_dssp HHHHHHHTC--CHHHHHHHHHHTTTCHHHHHHHHHHHTSCS
T ss_pred HHHHHHcCC--CHHHHHHHHHHhcCCHHHHHHHHHHhcccC
Confidence 556666666 789999999999999999999999887654
No 92
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=32.62 E-value=22 Score=28.99 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHcccccccc
Q 010943 176 RDVIREVLDSCGYDMQKSMSKLIDHSAETLG 206 (497)
Q Consensus 176 ~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~~ 206 (497)
+.+|+++|.+||+++.++-. +|.++-.++.
T Consensus 43 r~~I~~aL~~~~GN~s~AA~-~LGISR~TLy 72 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETAR-RLNMHRRTLQ 72 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHH-HHTSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHH-HhCCCHHHHH
Confidence 57899999999999998754 6788777654
No 93
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=31.07 E-value=68 Score=26.54 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=37.6
Q ss_pred ccchhHHHHH--HHHHh--cCccccCHHHHHHHHHhcCCcHHHHHHHHHcccccc
Q 010943 154 DHLQKEMEDF--LFKLL--GEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAET 204 (497)
Q Consensus 154 ~~~~~d~E~F--L~~ML--G~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~ 204 (497)
.+..++.++| +|+++ |+| .|+..-++.||.++|.. +.-++.++...+.+
T Consensus 8 ~ls~~e~~~~~~~F~~~D~~dG-~Is~~el~~~l~~~gl~-~~el~~i~~~~D~d 60 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNG-FLSGDKVKPVLLNSKLP-VDILGRVWELSDID 60 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCCSSS-CCBHHHHHHHHHTTTCC-HHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHhCCCCC-eEcHHHHHHHHHHcCCC-HHHHHHHHHHHcCC
Confidence 3457788887 77776 566 69999999999999977 45678888776654
No 94
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=30.90 E-value=44 Score=27.88 Aligned_cols=48 Identities=10% Similarity=0.259 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhcCcc---------ccCHHHHHHHHHhcCCcHHHHHHHHHcccccccc
Q 010943 158 KEMEDFLFKLLGEGF---------QLSRDVIREVLDSCGYDMQKSMSKLIDHSAETLG 206 (497)
Q Consensus 158 ~d~E~FL~~MLG~gf---------~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~~ 206 (497)
.-+|.|+-.+-|+.- ++.+.+|+++|..||+++.++-. +|.++-.++.
T Consensus 33 ~~l~~~~~~L~g~~~~~~l~~~l~~~Er~~I~~aL~~~~gn~~~AA~-~LGIsR~TL~ 89 (98)
T 1eto_A 33 QALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTLGNQTRAAL-MMGINRGTLR 89 (98)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHTSCHHHHH
T ss_pred HHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HhCCCHHHHH
Confidence 445666555545442 34578899999999999998754 6777776654
No 95
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.41 E-value=1.1e+02 Score=23.80 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHHhc-CccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 155 HLQKEMEDFLFKLLG-EGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 155 ~~~~d~E~FL~~MLG-~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
..+++.-+-.+.+.| . +..+-+..|..+++|++.|+...++.
T Consensus 16 ~~~~e~i~qF~~ITg~~----d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTGIE----SMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHCCS----CHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhCCC----CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345555555567787 4 58899999999999999999998875
No 96
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=29.46 E-value=32 Score=28.15 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=28.8
Q ss_pred CCccCHHHHHHHHHHhC-CCchhhhhhhccccCCC
Q 010943 20 GSVFTMQEIALACRNAG-RNPDLAGESLCDKQANA 53 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~-~d~~~A~eiL~~~~~~~ 53 (497)
.=+|+-+.+..|++.++ +|++.|.+.|.+-.+++
T Consensus 38 ~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 38 SMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp HHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred HcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 44599999999999996 79999999999866653
No 97
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=29.28 E-value=25 Score=30.38 Aligned_cols=34 Identities=15% Similarity=-0.018 Sum_probs=26.9
Q ss_pred hccCCccCH-HHHHHHHHHhCCCchhhhhhhcccc
Q 010943 17 ALNGSVFTM-QEIALACRNAGRNPDLAGESLCDKQ 50 (497)
Q Consensus 17 ~L~gs~fSl-~~ia~Ay~~A~~d~~~A~eiL~~~~ 50 (497)
.|..=+|+= +.+..|...++||++.|.|+|.+..
T Consensus 72 qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 72 QLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 334334654 6889999999999999999998754
No 98
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=29.27 E-value=27 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=27.6
Q ss_pred CCccCHHHHHHHHHHhCCCchhhhhhhccccC
Q 010943 20 GSVFTMQEIALACRNAGRNPDLAGESLCDKQA 51 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~d~~~A~eiL~~~~~ 51 (497)
.=+|+.++|..|...-++|+++|.|.|....+
T Consensus 85 eMGF~~~~a~~AL~~~~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 85 EMGFELKDIKEVLLLHNNDQDNALEDLMARAG 116 (118)
T ss_dssp HTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC-
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHHHHhcc
Confidence 33599999999999999999999999987554
No 99
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.28 E-value=52 Score=25.56 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=29.7
Q ss_pred HHHHHHhcCccccCHHHHHHHHHhcCC-cHHHHHHHHHccccc
Q 010943 162 DFLFKLLGEGFQLSRDVIREVLDSCGY-DMQKSMSKLIDHSAE 203 (497)
Q Consensus 162 ~FL~~MLG~gf~L~~~vIr~VL~~cGy-Dv~ks~d~LLd~s~~ 203 (497)
+=|..| | .++..++..|-.||- |++.||+.||....-
T Consensus 14 ~~L~~M---G--F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 14 EPLLAM---G--FPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHT---S--CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred HHHHHc---C--CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 345555 4 567999999999987 999999999987653
No 100
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=26.90 E-value=81 Score=27.02 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHHHhcC-ccccCHHHHHHHHHhcCCcHHHHHHHHHccc
Q 010943 154 DHLQKEMEDFLFKLLGE-GFQLSRDVIREVLDSCGYDMQKSMSKLIDHS 201 (497)
Q Consensus 154 ~~~~~d~E~FL~~MLG~-gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s 201 (497)
.+..+++.++|..++.. +..++.++++.+...|+.|+...+..|-.+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAA 208 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34588999999988853 7789999999999999999988777654443
No 101
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=26.48 E-value=55 Score=28.52 Aligned_cols=31 Identities=16% Similarity=-0.006 Sum_probs=24.7
Q ss_pred EEEEecCCCCCCCCccHHHHHHHHHHcCCceEee
Q 010943 441 KVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEE 474 (497)
Q Consensus 441 rVItG~G~HS~g~~k~kpAV~klL~kegi~w~e~ 474 (497)
-||+|+|..- ..+.|++.++|++.||....-
T Consensus 71 vliiGtG~~~---~~l~p~~~~~l~~~GI~vE~m 101 (128)
T 2fi9_A 71 VLLIGTGVEL---LRLPEELRVLLWEKRISSDTM 101 (128)
T ss_dssp EEEEECTTSC---CCCCHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCC---CCCCHHHHHHHHHcCCEEEEe
Confidence 4899999982 346679999999999986554
No 102
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.77 E-value=42 Score=26.12 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=29.8
Q ss_pred CCccCHHHHHHHHHHhCC-CchhhhhhhccccCCC
Q 010943 20 GSVFTMQEIALACRNAGR-NPDLAGESLCDKQANA 53 (497)
Q Consensus 20 gs~fSl~~ia~Ay~~A~~-d~~~A~eiL~~~~~~~ 53 (497)
.=+|+-+.+..|++..++ |++.|.+.|.+-.+++
T Consensus 18 ~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 18 AMGFPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp HTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred HcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 455999999999999987 9999999999877654
No 103
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=25.70 E-value=62 Score=26.99 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=45.7
Q ss_pred CeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCccHHHHHHHHHHcCCceEe-eCCCeEEEEEe
Q 010943 408 LLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTE-EGNAGTILIPL 484 (497)
Q Consensus 408 ~tIDLHGLhV~EAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~kegi~w~e-~~n~GvIlI~L 484 (497)
.+||+-|+.==.-+-.+++.|..+. ....|.|++-.. .++. -|.+||++.|+.+.. +...|.+.|.|
T Consensus 28 ~~LD~rGl~CP~PvlktkkaL~~l~---~Ge~L~Vl~dd~------~a~~-dIp~~~~~~G~~v~~~e~~~~~~~i~I 95 (97)
T 1je3_A 28 YRLDMVGEPCPYPAVATLEAMPQLK---KGEILEVVSDCP------QSIN-NIPLDARNHGYTVLDIQQDGPTIRYLI 95 (97)
T ss_dssp EEECSBCCSSSSSTHHHHHHTTTCC---SSCEEEEEEBCS------SSSC-HHHHHHHHHTCSEEEEEECSSSEEEEE
T ss_pred eEEeCCCCCCCHHHHHHHHHHHcCC---CCCEEEEEECCc------chHH-HHHHHHHHCCCEEEEEEeeCCEEEEEE
Confidence 4699999987777777777777653 236799987542 2222 377999999999865 23566555544
No 104
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=24.82 E-value=15 Score=39.22 Aligned_cols=45 Identities=11% Similarity=0.222 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHhc-CccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 154 DHLQKEMEDFLFKLLG-EGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 154 ~~~~~d~E~FL~~MLG-~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
.+..+++++||-.--. -+|. ++..-..|-.|+||+++||..|..+
T Consensus 140 ~l~d~~ldeYL~~Ars~~g~n--~EqAL~~L~~~~yDi~~AL~~L~~~ 185 (482)
T 2xag_B 140 NLSEAKLDEYIAIAKEKHGYN--MEQALGMLFWHKHNIEKSLADLPNF 185 (482)
T ss_dssp ------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHhcCcc--HHHHHHHHHHccCCHHHHHHHHhcc
Confidence 4667889999853222 1344 4555578899999999999988754
No 105
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=24.72 E-value=1.3e+02 Score=20.94 Aligned_cols=38 Identities=26% Similarity=0.563 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHc
Q 010943 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLID 199 (497)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd 199 (497)
.+-+++|. ..-| .+..+-+..|..|++|++.|++...+
T Consensus 6 ~~~i~~F~-~iTg----~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 6 QDALREFV-AVTG----AEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHH-HHTC----CCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-HHhC----cCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34566775 4555 47999999999999999999988765
No 106
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=24.02 E-value=3e+02 Score=25.65 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Q 010943 338 HLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADE 388 (497)
Q Consensus 338 ~~R~~A~eh~~~Rne~f~kA~~AY~~Gd~a~A~~LSeqGk~~~~karean~ 388 (497)
.+.+...+......++.++-.+||..||-..|..+..+-|++..+.++...
T Consensus 152 ~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~~ 202 (207)
T 3bvo_A 152 AMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKL 202 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666677778889999999999999999999999998887776653
No 107
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.95 E-value=88 Score=29.13 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=39.5
Q ss_pred ccchhHHHHHHHHHhc-CccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 154 DHLQKEMEDFLFKLLG-EGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 154 ~~~~~d~E~FL~~MLG-~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
.+..+++.++|...+. +|+.++.+.+..+...||.|+-.++..|=.+
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3457899999998875 6789999999999999999999988877443
No 108
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.72 E-value=1.4e+02 Score=22.75 Aligned_cols=40 Identities=18% Similarity=0.476 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHccc
Q 010943 157 QKEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHS 201 (497)
Q Consensus 157 ~~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s 201 (497)
.+.+++|. .+-| .+..+-+..|..+++|++.|++...+.-
T Consensus 16 ~e~i~qF~-~iTg----~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 16 KGLIQQFT-TITG----ASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHH-HHTC----CCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHH-HHhC----CCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45577776 5555 3599999999999999999999987653
No 109
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=23.32 E-value=2.7e+02 Score=25.49 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q 010943 338 HLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREAD 387 (497)
Q Consensus 338 ~~R~~A~eh~~~Rne~f~kA~~AY~~Gd~a~A~~LSeqGk~~~~karean 387 (497)
.+.....+......+|.++-.+||..+|-+.|..+..+-+++..+..+..
T Consensus 122 ~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik 171 (181)
T 3uo3_A 122 GVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFK 171 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667788889999999999999999999999999999888776653
No 110
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.87 E-value=96 Score=24.25 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=32.2
Q ss_pred chhHHHHH--HHHHh---cCccccCHHHHHHHHHhcCCcHHHHHHHHHccccc
Q 010943 156 LQKEMEDF--LFKLL---GEGFQLSRDVIREVLDSCGYDMQKSMSKLIDHSAE 203 (497)
Q Consensus 156 ~~~d~E~F--L~~ML---G~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~s~~ 203 (497)
..++.++| +|+++ |+| .|+..-++.+|..+|.. +.-++.++.....
T Consensus 4 s~~~~~~~~~~F~~~D~d~dG-~I~~~el~~~l~~~g~~-~~~~~~i~~~~D~ 54 (92)
T 1fi6_A 4 TDEQRQYYVNQFKTIQPDLNG-FIPGSAAKEFFTKSKLP-ILELSHIWELSDF 54 (92)
T ss_dssp CHHHHHHHHHHHTTTCCSTTC-EEEHHHHHHHHHHHSSC-HHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHCCCCCC-cCcHHHHHHHHHHcCCC-HHHHHHHHHHHCC
Confidence 45666666 57777 444 48899999999999876 4456677765543
No 111
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=22.81 E-value=27 Score=27.41 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=45.0
Q ss_pred CCeeecCCCCHHHHHHHHHHHHHhhcCCCCcceEEEEEecCCCCCCCCccHHHHHHHHHHcCCceEe-eCCCeEEEE
Q 010943 407 DLLLDLHDHGAKEAIRLLKCHLSSLSGIPTIKYLKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTE-EGNAGTILI 482 (497)
Q Consensus 407 ~~tIDLHGLhV~EAi~iLk~~L~~l~~~~s~~~LrVItG~G~HS~g~~k~kpAV~klL~kegi~w~e-~~n~GvIlI 482 (497)
..+||+-|+.==.-+-.+++.|..+.. ...|.|++-. .. -..-|.++|++.|+.+.. +...|.+.|
T Consensus 6 ~~~lD~rGl~CP~Pvl~~k~al~~l~~---G~~L~V~~dd------~~-a~~di~~~~~~~G~~~~~~~~~~~~~~i 72 (78)
T 1pav_A 6 DRVIDARGSYCPGPLMELIKAYKQAKV---GEVISVYSTD------AG-TKKDAPAWIQKSGQELVGVFDRNGYYEI 72 (78)
T ss_dssp CCCCCBSSCSSCTTHHHHHHHHTTSCT---TCCEECCBSS------SC-HHHHHHHHHHHHTEEECCCCCCSSCBCC
T ss_pred cEEEECCCCCCCHHHHHHHHHHHcCCC---CCEEEEEECC------cc-HHHHHHHHHHHCCCEEEEEEEeCCEEEE
Confidence 367999999877777778888877642 2668888532 22 234588999999988754 234564433
No 112
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=21.59 E-value=79 Score=26.62 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhcCccccCHHHHHHHHHhcCCcHHHHHHHHHcc
Q 010943 158 KEMEDFLFKLLGEGFQLSRDVIREVLDSCGYDMQKSMSKLIDH 200 (497)
Q Consensus 158 ~d~E~FL~~MLG~gf~L~~~vIr~VL~~cGyDv~ks~d~LLd~ 200 (497)
=+.|.+|..||-++ + ++.+|..||.|+++-.+.|-..
T Consensus 25 i~~eHlLlaLl~~~-----~-~~~iL~~~g~~~~~l~~~l~~~ 61 (143)
T 1k6k_A 25 MTVEHLLLALLSNP-----S-AREALEACSVDLVALRQELEAF 61 (143)
T ss_dssp ECHHHHHHHHTTCH-----H-HHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCc-----h-HHHHHHHcCCCHHHHHHHHHHH
Confidence 35699999999876 2 8999999999988766555443
No 113
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=21.14 E-value=66 Score=29.28 Aligned_cols=32 Identities=3% Similarity=-0.089 Sum_probs=25.2
Q ss_pred EEEEEecCCCCCCCCccHHHHHHHHHHcCCceEee
Q 010943 440 LKVILEMNDEDTTKGGRRRRVMKLLEEESIEWTEE 474 (497)
Q Consensus 440 LrVItG~G~HS~g~~k~kpAV~klL~kegi~w~e~ 474 (497)
=-||+|+|..-. .+.|++.++|++.||.....
T Consensus 90 EvliiGTG~~~~---~l~p~~~~~L~~~GIgvE~M 121 (150)
T 3cpk_A 90 EVLLVGTGRRQH---LLGPEQVRPLLAMGVGVEAM 121 (150)
T ss_dssp SEEEEECTTSCC---CCCHHHHHHHHTTTCEEEEE
T ss_pred CEEEEcCCCCCC---CCCHHHHHHHHHcCCEEEEe
Confidence 348999998765 46779999999999975543
No 114
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=20.97 E-value=4.1e+02 Score=23.90 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Q 010943 338 HLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADE 388 (497)
Q Consensus 338 ~~R~~A~eh~~~Rne~f~kA~~AY~~Gd~a~A~~LSeqGk~~~~karean~ 388 (497)
.+.....+......+|.++-.+||..+|-..|+.+..+-+++.....+...
T Consensus 117 ~l~~l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~ 167 (174)
T 3hho_A 117 ALVAFDTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVER 167 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677788899999999999999999999999999998887776654
No 115
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=20.82 E-value=28 Score=28.14 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=25.0
Q ss_pred CHHHHHHHHHhcCCcHHHHHHHHHcccccccc
Q 010943 175 SRDVIREVLDSCGYDMQKSMSKLIDHSAETLG 206 (497)
Q Consensus 175 ~~~vIr~VL~~cGyDv~ks~d~LLd~s~~~~~ 206 (497)
.+.+|+++|.+||+++.++-. +|.+|-.++.
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~-~LGIsr~tL~ 82 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAAR-LLGWGAATLT 82 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHH-HTTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHH-HHCcCHHHHH
Confidence 578999999999999998754 6777776653
No 116
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=20.49 E-value=4.3e+02 Score=23.75 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Q 010943 338 HLRTAVMEYRGTMKEYCKAAIDAFAQGDHVQAEKLLEQGKFFYEKAREADE 388 (497)
Q Consensus 338 ~~R~~A~eh~~~Rne~f~kA~~AY~~Gd~a~A~~LSeqGk~~~~karean~ 388 (497)
.+.....+......+|.++-.+||..+|.+.|..+..+-+++..+..+...
T Consensus 113 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl~~~i~~ 163 (171)
T 1fpo_A 113 RLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQ 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777778888999999999999999999999999998887776653
Done!