BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010945
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 591 bits (1524), Expect = e-169, Method: Compositional matrix adjust.
Identities = 284/430 (66%), Positives = 346/430 (80%), Gaps = 2/430 (0%)
Query: 64 VETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAAS 123
V+TFW+WL+++ V++ K+P++ + EGLGLVA +DI++N+V+L+VP + WINPD VAAS
Sbjct: 6 VQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAAS 65
Query: 124 EIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVEXXXXXX 183
EIG +CS LKPW+SV LFLIRE+ +EDS W+ Y ILP+ TDST++WSEEEL E
Sbjct: 66 EIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQL 125
Query: 184 XXXXXXVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLV 243
VKEYV+NE LK+E+EIILPNK+LFP P+TLDDF WAFGILRSRAFSRLR +NLV
Sbjct: 126 LKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLV 185
Query: 244 LIPLADLINHSPGITTEDYAYEIKG-AGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSN 302
++P+ADLINHS G+TTED+AYE+KG AGLFS D LFSL++P+ VKAGEQV IQYDLNKSN
Sbjct: 186 VVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSN 245
Query: 303 AELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPP 362
AELALDYGFIE +R+AYTLTLEISESDPFF DKLD+AE+NG ++AYFDI RTLPP
Sbjct: 246 AELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPP 305
Query: 363 AMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSGFHT 422
+L YLRLVALGGTDAFLLES+FR+TIWGHL+L VS NEEL+C+ VR+ACKSAL+G+HT
Sbjct: 306 GLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHT 365
Query: 423 TIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQIDEIFKXXXXXXXXXXXXXXXXXKDL 482
TIE+D + L+ GNLD RL IAVG+R GEK VLQQID IF+ KDL
Sbjct: 366 TIEQDRE-LKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDL 424
Query: 483 GLVGEQGDII 492
GL GE GDI+
Sbjct: 425 GLCGENGDIL 434
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 591 bits (1524), Expect = e-169, Method: Compositional matrix adjust.
Identities = 284/430 (66%), Positives = 346/430 (80%), Gaps = 2/430 (0%)
Query: 64 VETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAAS 123
V+TFW+WL+++ V++ K+P++ + EGLGLVA +DI++N+V+L+VP + WINPD VAAS
Sbjct: 10 VQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAAS 69
Query: 124 EIGSLCSGLKPWISVALFLIREKKKEDSPWRVYLDILPECTDSTVFWSEEELVEXXXXXX 183
EIG +CS LKPW+SV LFLIRE+ +EDS W+ Y ILP+ TDST++WSEEEL E
Sbjct: 70 EIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQL 129
Query: 184 XXXXXXVKEYVQNEYLKVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAFSRLRGQNLV 243
VKEYV+NE LK+E+EIILPNK+LFP P+TLDDF WAFGILRSRAFSRLR +NLV
Sbjct: 130 LKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLV 189
Query: 244 LIPLADLINHSPGITTEDYAYEIKG-AGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSN 302
++P+ADLINHS G+TTED+AYE+KG AGLFS D LFSL++P+ VKAGEQV IQYDLNKSN
Sbjct: 190 VVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSN 249
Query: 303 AELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPP 362
AELALDYGFIE +R+AYTLTLEISESDPFF DKLD+AE+NG ++AYFDI RTLPP
Sbjct: 250 AELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPP 309
Query: 363 AMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELICRVVRDACKSALSGFHT 422
+L YLRLVALGGTDAFLLES+FR+TIWGHL+L VS NEEL+C+ VR+ACKSAL+G+HT
Sbjct: 310 GLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHT 369
Query: 423 TIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQIDEIFKXXXXXXXXXXXXXXXXXKDL 482
TIE+D + L+ GNLD RL IAVG+R GEK VLQQID IF+ KDL
Sbjct: 370 TIEQDRE-LKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDL 428
Query: 483 GLVGEQGDII 492
GL GE GDI+
Sbjct: 429 GLCGENGDIL 438
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 176/393 (44%), Gaps = 45/393 (11%)
Query: 90 EGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPW-----ISVALFLIR 144
EG GL A RDI E+ L VP K ++ S +G L S + I++A L+
Sbjct: 103 EGFGLRATRDIKAEELFLWVPRKLLXTVESAKNSVLGPLYSQDRILQAXGNIALAFHLLC 162
Query: 145 EKKKEDSPWRVYLDILPECTDSTVFWSEEEL-----VEXXXXXXXXXXXXVKEYVQNEYL 199
E+ +S W+ Y+ LP D+ +++ E+E+ + ++Y +
Sbjct: 163 ERASPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAY--FY 220
Query: 200 KVEEEIILPNKQLFPRPITLDDFLWAFGILRSRAF-------SRLRGQNLVLIPLADLIN 252
KV + NK T +D+ WA + +R SR+ L LIPL D N
Sbjct: 221 KVIQTHPHANKLPLKDSFTYEDYRWAVSSVXTRQNQIPTEDGSRV---TLALIPLWDXCN 277
Query: 253 HSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFI 312
H+ G+ T Y E R +L+ +AGEQ+ I Y +SNAE + GF
Sbjct: 278 HTNGLITTGYNLED------DRCECVALQD---FRAGEQIYIFYG-TRSNAEFVIHSGFF 327
Query: 313 ESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPP---AMLQYLR 369
+ + + L +S+SD + K ++ G+ S+ F L T PP +L +LR
Sbjct: 328 FDNNSHDRVKIKLGVSKSDRLYAXKAEVLARAGIPTSSVF--ALHFTEPPISAQLLAFLR 385
Query: 370 LVALGGTDAFLLESIFRNT------IWGHLDLPVSHANEELICRVVRDACKSALSGFHTT 423
+ T+ L E + ++ G+ + PVS NE + + D L + TT
Sbjct: 386 VFCX--TEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTT 443
Query: 424 IEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQ 456
IEED+ +L+ +L R + A+ +R GEK +L++
Sbjct: 444 IEEDKSVLKNHDLSVRAKXAIKLRLGEKEILEK 476
>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310
pdb|3QXY|B Chain B, Human Setd6 In Complex With Rela Lys310
pdb|3RC0|A Chain A, Human Setd6 In Complex With Rela Lys310 Peptide
pdb|3RC0|B Chain B, Human Setd6 In Complex With Rela Lys310 Peptide
Length = 449
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 114/290 (39%), Gaps = 46/290 (15%)
Query: 64 VETFWQWLRDQKV-VSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAA 122
V F W R + +SPK + G G+VA+ + E++ VP ++ T +
Sbjct: 22 VACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCS- 80
Query: 123 SEIGSLC-------SGLKPWISVALFLIREKKKEDSPWRVYLDILPECT--DSTVFWSEE 173
IG L W+ + L L+ E + S WR Y + PE + +FW EE
Sbjct: 81 --IGGLLERERVALQSQSGWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEE 138
Query: 174 ELVEXXXXXXXXXXXXVKEYVQNEYLKVEEE---IILPNKQLFP-----RPITLDDFLWA 225
E V E V+ + + E I+LP + P R +L+ +
Sbjct: 139 E------RRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQL 192
Query: 226 FGILRSRAFSRLRG--------QNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLL 277
++ + +F + V++P AD++NH + + E +S + L
Sbjct: 193 VALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNH---LANHNANLE------YSANCL 243
Query: 278 FSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEI 327
+ T P+ G ++ Y +N +L YGF+E D T +++
Sbjct: 244 RMVATQ-PIPKGHEIFNTYG-QMANWQLIHMYGFVEPYPDNTDDTADIQM 291
>pdb|3ULS|H Chain H, Crystal Structure Of Fab12
pdb|3ULS|B Chain B, Crystal Structure Of Fab12
pdb|3ULU|D Chain D, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|D Chain D, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 226
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 35 PSFRLKSRAFAATCSLHSASATTNPPTAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGL 94
P S+ + TC++ S ++N W W+R +SP R E LG+
Sbjct: 9 PGLVKPSQTLSLTCAISGDSVSSN------SAAWGWIR-------QSPGRGL---EWLGI 52
Query: 95 VAQRDIAKNEVVLEVPMKFWINPDT 119
+ +R N + V + INPDT
Sbjct: 53 IQKRSKWYNNYAVSVKSRITINPDT 77
>pdb|3CUZ|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
pdb|3CV1|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 532
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 66 TFWQWLRDQKVVSPKSPIRPATFPEGLG 93
+ WQW+ QK +S P+ A F + LG
Sbjct: 456 SIWQWIHHQKTLSNGKPVTKALFRQMLG 483
>pdb|3CV2|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
pdb|3CV2|B Chain B, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 532
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 66 TFWQWLRDQKVVSPKSPIRPATFPEGLG 93
+ WQW+ QK +S P+ A F + LG
Sbjct: 456 SIWQWIHHQKTLSNGKPVTKALFRQMLG 483
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,014,746
Number of Sequences: 62578
Number of extensions: 526166
Number of successful extensions: 1071
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 12
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)