Query 010945
Match_columns 497
No_of_seqs 210 out of 1334
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 1.7E-37 3.8E-42 331.0 26.2 403 61-484 46-469 (472)
2 KOG1338 Uncharacterized conser 100.0 1.3E-32 2.9E-37 271.3 25.0 269 62-344 7-312 (466)
3 PF09273 Rubis-subs-bind: Rubi 99.8 6.5E-20 1.4E-24 161.6 12.2 128 327-454 1-128 (128)
4 PF00856 SET: SET domain; Int 99.7 4.5E-17 9.8E-22 146.9 7.1 52 240-297 111-162 (162)
5 smart00317 SET SET (Su(var)3-9 98.6 3.6E-08 7.8E-13 84.2 3.7 47 244-296 70-116 (116)
6 KOG2589 Histone tail methylase 94.1 0.056 1.2E-06 54.7 4.2 47 242-298 192-238 (453)
7 KOG4442 Clathrin coat binding 93.8 0.061 1.3E-06 58.7 4.0 46 247-298 193-238 (729)
8 KOG1085 Predicted methyltransf 93.5 0.063 1.4E-06 52.6 3.3 52 248-306 334-385 (392)
9 KOG1080 Histone H3 (Lys4) meth 84.3 0.95 2E-05 52.6 3.9 45 247-297 939-983 (1005)
10 KOG1079 Transcriptional repres 83.8 0.95 2.1E-05 49.5 3.4 45 247-297 665-709 (739)
11 KOG1083 Putative transcription 80.7 1.5 3.3E-05 50.2 3.7 43 250-298 1253-1295(1306)
12 COG2940 Proteins containing SE 70.9 2.2 4.9E-05 46.1 1.7 49 246-300 404-452 (480)
13 KOG1082 Histone H3 (Lys9) meth 60.0 8.2 0.00018 40.2 3.3 49 247-298 272-321 (364)
14 COG1188 Ribosome-associated he 37.4 41 0.00089 28.2 3.3 54 216-298 8-61 (100)
15 KOG1085 Predicted methyltransf 34.7 32 0.0007 34.2 2.7 25 90-114 266-290 (392)
16 PRK00888 ftsB cell division pr 32.6 1.3E+02 0.0029 25.3 5.8 42 453-495 45-87 (105)
17 KOG3429 Predicted peptidyl-tRN 24.9 2.8E+02 0.006 25.5 6.6 52 401-457 111-163 (172)
18 KOG2461 Transcription factor B 24.3 65 0.0014 34.0 3.0 34 276-310 122-155 (396)
19 PF08666 SAF: SAF domain; Int 24.3 44 0.00095 24.7 1.3 14 93-106 3-16 (63)
20 PF10281 Ish1: Putative stress 22.5 79 0.0017 21.3 2.2 18 63-80 5-22 (38)
21 PF11186 DUF2972: Protein of u 20.2 1.3E+02 0.0029 28.4 4.0 39 444-482 157-198 (199)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=331.05 Aligned_cols=403 Identities=32% Similarity=0.434 Sum_probs=312.1
Q ss_pred ccchHHHHHHHhhCCCCCCCCCeeecccCCceEEEEccCCCCCcEEEEecCCcccCccccccchhhhhhcCCCch-HHHH
Q 010945 61 TAQVETFWQWLRDQKVVSPKSPIRPATFPEGLGLVAQRDIAKNEVVLEVPMKFWINPDTVAASEIGSLCSGLKPW-ISVA 139 (497)
Q Consensus 61 ~~~~~~f~~Wl~~~G~~~~~~~v~~~~~~~GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~~~l~~~~~~l~~~-~~La 139 (497)
....+.+.-|.+..|....+. ........++++.+..++..++.+..+|....+..+.... .... ..++
T Consensus 46 ~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~ 115 (472)
T KOG1337|consen 46 SENIKSLKFWLTGNGLSSSKS-SLPGNDIDEWPLLVSIRLIKGEKLLLVPPLLLLIAKRKPY---------NDLLPIALA 115 (472)
T ss_pred ccccccceeccccCCcchhhh-ccccccccccchhhhhhhhhhhhhccCCchhhhccccccC---------ccccHHHHH
Confidence 356677777777777765541 1122222466666666666666666666665555443321 1111 5899
Q ss_pred HHHHHHh-cCCCCCcHHHHhhcCCCCCCcccCCHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----
Q 010945 140 LFLIREK-KKEDSPWRVYLDILPECTDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIILPNKQLFP---- 214 (497)
Q Consensus 140 l~Ll~E~-~~~~S~W~pYl~~LP~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~---- 214 (497)
++|++|. .+..|.|+||+..||+.+++|++|..+++..|++++....+..+++.++..+..+.+ +...++..++
T Consensus 116 ~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 194 (472)
T KOG1337|consen 116 LFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLE-VLQSHPSLFGSDLF 194 (472)
T ss_pred HHHHHhhhccccccchhhhhhchhhcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHH-HHHhcccccccccc
Confidence 9999999 666799999999999999999999999999999999999888777777765555443 3444444442
Q ss_pred CCCCHHHHHHHHHHHHhcCcccCC---------CCceEEeeccccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCC
Q 010945 215 RPITLDDFLWAFGILRSRAFSRLR---------GQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVP 285 (497)
Q Consensus 215 ~~~t~~~f~WA~~iv~SRaf~~~~---------g~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~ 285 (497)
..+|+++|.||++++.||+|+... .+..+|+|++||+||++... ..+++..++.+.+++.++
T Consensus 195 d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~---------~~~~~~~d~~~~l~~~~~ 265 (472)
T KOG1337|consen 195 DTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVI---------KAGYNQEDEAVELVAERD 265 (472)
T ss_pred CccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhc---------cccccCCCCcEEEEEeee
Confidence 237999999999999999997532 23579999999999999762 123444566899999999
Q ss_pred CCCCCEEEeccCCCCChHHHHHhCCCCCCCCCCCeEEEEeecCCCCcChhcHHHHHHHCCCCCceEEEeecCCCCCHHHH
Q 010945 286 VKAGEQVLIQYDLNKSNAELALDYGFIESKSDRNAYTLTLEISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAML 365 (497)
Q Consensus 286 i~~GeEv~i~YG~~~sN~~LL~~YGFv~~~N~~D~v~l~l~~~~~d~~~~~k~~il~~~gl~~~~~f~i~~~~~~~~~ll 365 (497)
|++||||||+||+ ++|.+||++|||+.++||+|.|.+.+.++..|+.+..|.+.+..+++.....|.+...+....++.
T Consensus 266 v~~geevfi~YG~-~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (472)
T KOG1337|consen 266 VSAGEEVFINYGP-KSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPVSEML 344 (472)
T ss_pred ecCCCeEEEecCC-CchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCchhhhh
Confidence 9999999999997 999999999999999999999999999999999999999999999999999998877655555555
Q ss_pred HHHHHHhcCCCcH--HHHHH---HHhccccCCCCCCCChhhHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHcCCCCChh
Q 010945 366 QYLRLVALGGTDA--FLLES---IFRNTIWGHLDLPVSHANEELICRVVRDA-CKSALSGFHTTIEEDEQLLQGGNLDPR 439 (497)
Q Consensus 366 ~~lRl~~~~~~e~--~~l~~---~~~~~~~g~~~~p~s~~nE~~~~~~L~~~-~~~~L~~y~tTieeD~~~L~~~~~~~r 439 (497)
...++..+..... ..+.. ..+...+.....+++.++|..++..+... |...+..+.++++++...+.+..++.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~l~~~ 424 (472)
T KOG1337|consen 345 LLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDNILSKL 424 (472)
T ss_pred hhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhcccccchh
Confidence 5444333333222 11111 22223344456788999999999999988 888899999999999999988778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhccccCC
Q 010945 440 LRIAVGVRAGEKRVLQQIDEIFKERELELDELEYYQERRLKDLGL 484 (497)
Q Consensus 440 ~~~A~~~R~~EK~IL~~~~~~l~~~~~~l~~~~~~~~r~~~~~~~ 484 (497)
..++..++..+|+||++.+..+..+...+..+.|+|.+.++.+..
T Consensus 425 ~~~~~k~~~~~~~iL~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~ 469 (472)
T KOG1337|consen 425 LELLEKLRTLEKRILEKSLKLLRSRLKLLHSLEYNQARLLQSLKS 469 (472)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhhcccccccchhhhhhhhh
Confidence 999999999999999999999998889999999999998776543
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=271.30 Aligned_cols=269 Identities=22% Similarity=0.341 Sum_probs=208.2
Q ss_pred cchHHHHHHHhhCC-CCCCCCCeeeccc---CC--ceEEEEccCCCCCcEEEEecCCcccCcccccc-----chhhhhhc
Q 010945 62 AQVETFWQWLRDQK-VVSPKSPIRPATF---PE--GLGLVAQRDIAKNEVVLEVPMKFWINPDTVAA-----SEIGSLCS 130 (497)
Q Consensus 62 ~~~~~f~~Wl~~~G-~~~~~~~v~~~~~---~~--GrGl~A~~~I~~ge~ll~IP~~~~ls~~~~~~-----~~l~~~~~ 130 (497)
+..+.|+.|++..+ .+.++ +|..... .+ |+|++|+++|++||.++.+|++.+++..+... +....++.
T Consensus 7 d~~~~fl~w~k~t~eletSp-Ki~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~Ln 85 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSP-KIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLLN 85 (466)
T ss_pred cHHHHHHHHHHHhhheeecc-cccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHhh
Confidence 34789999999987 66665 3544332 33 99999999999999999999999999876531 23344556
Q ss_pred CCCchHHHHHHHHHHhcCCC-CCcHHHHhhcCCC--CCCcccCCHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010945 131 GLKPWISVALFLIREKKKED-SPWRVYLDILPEC--TDSTVFWSEEELVELQGTQLLSTTLGVKEYVQNEYLKVEEEIIL 207 (497)
Q Consensus 131 ~l~~~~~Lal~Ll~E~~~~~-S~W~pYl~~LP~~--~~~pl~w~~~el~~L~gt~l~~~~~~~~~~~~~~~~~l~~~~~~ 207 (497)
+.+.|..|++.|++|..-++ |+|+||+..+|+. .++|+||+++|+..|.-+.+++.+.+.++.++++|....+++.+
T Consensus 86 e~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~pf~~ 165 (466)
T KOG1338|consen 86 EVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQPFKQ 165 (466)
T ss_pred cCCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHHHHH
Confidence 78999999999999994444 9999999999984 78999999999998644444444778888999999999999998
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcCcccCC--------------CCceEEeeccccccCCCCCCCCCceeEecCCCccC
Q 010945 208 PNKQLFPRPITLDDFLWAFGILRSRAFSRLR--------------GQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFS 273 (497)
Q Consensus 208 ~~~~~f~~~~t~~~f~WA~~iv~SRaf~~~~--------------g~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~ 273 (497)
.+|.+|.. +++|+|+.+++++.+.+|.+.- ....+|+|.+||+||+..... .... .
T Consensus 166 ~~p~vfs~-~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~n--anl~-------y 235 (466)
T KOG1338|consen 166 HCPIVFSR-PSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKAN--ANLR-------Y 235 (466)
T ss_pred hCcchhcc-cCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcc--ccee-------c
Confidence 88888843 7999999999999999996521 125699999999999986322 2222 2
Q ss_pred CCceEEEEeCCCCCCCCEEEeccCCCCChHHHHHhCCCCCCCCCC---------CeEEEEeecCCCCcChhcHHHHHHHC
Q 010945 274 RDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYGFIESKSDR---------NAYTLTLEISESDPFFGDKLDIAETN 344 (497)
Q Consensus 274 ~~~~~~~~a~~~i~~GeEv~i~YG~~~sN~~LL~~YGFv~~~N~~---------D~v~l~l~~~~~d~~~~~k~~il~~~ 344 (497)
++.|+.|+|+++|.+|+||+++||. ++|. |++||.+...-.| |.+.+..+++.+++.+..|.-+++.+
T Consensus 236 ~~NcL~mva~r~iekgdev~n~dg~-~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~ 312 (466)
T KOG1338|consen 236 EDNCLEMVADRNIEKGDEVDNSDGL-KPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILLQLH 312 (466)
T ss_pred cCcceeeeecCCCCCcccccccccc-Ccch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHHHhc
Confidence 3679999999999999999999996 8888 8888887754332 22333345666777666665544443
No 3
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.82 E-value=6.5e-20 Score=161.56 Aligned_cols=128 Identities=38% Similarity=0.616 Sum_probs=108.9
Q ss_pred cCCCCcChhcHHHHHHHCCCCCceEEEeecCCCCCHHHHHHHHHHhcCCCcHHHHHHHHhccccCCCCCCCChhhHHHHH
Q 010945 327 ISESDPFFGDKLDIAETNGLGESAYFDIVLGRTLPPAMLQYLRLVALGGTDAFLLESIFRNTIWGHLDLPVSHANEELIC 406 (497)
Q Consensus 327 ~~~~d~~~~~k~~il~~~gl~~~~~f~i~~~~~~~~~ll~~lRl~~~~~~e~~~l~~~~~~~~~g~~~~p~s~~nE~~~~ 406 (497)
++++||+++.|.++|+.+|+.....|.+..++++|++|++++|++++++++............++....|+|.+||.+++
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~~~~~Ll~~lRv~~~~~~e~~~~~~~~~~~~~~~~~~~ls~~nE~~~l 80 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGPLPPELLAALRVLLMTEEELRALKSLADSSEWSDRSEPLSPENEIAAL 80 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSSSHHHHHHHHHHHHSCHHHHHHHHHCGTTTHCCHCCC-SBHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCCCCHHHHHHHHHHHcChHHHHHHHHhhcccccccccCCCchhhHHHHH
Confidence 46789999999999999999988899999887779999999999999988876665544333333345689999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHcCCCCChhHHHHHHHHHHHHHHH
Q 010945 407 RVVRDACKSALSGFHTTIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVL 454 (497)
Q Consensus 407 ~~L~~~~~~~L~~y~tTieeD~~~L~~~~~~~r~~~A~~~R~~EK~IL 454 (497)
++|...|...|++|+||+|+|+++|+......++++|++||+|||+||
T Consensus 81 ~~L~~~~~~~L~~y~TtleeD~~~L~~~~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 81 QFLIDLCEARLSAYPTTLEEDEELLQSNDLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHHHHHHHHTTSSS-HHHHHHHCHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHhcCCCcHHHHHHHHHHHHhHhcC
Confidence 999999999999999999999999999888888999999999999998
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.68 E-value=4.5e-17 Score=146.88 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=40.2
Q ss_pred CceEEeeccccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCCCCCCCEEEeccC
Q 010945 240 QNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYD 297 (497)
Q Consensus 240 ~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~i~~GeEv~i~YG 297 (497)
+..+|+|++||+||++.+ |+.+....+ .+...++++|.++|++|||||++||
T Consensus 111 ~~~~l~p~~d~~NHsc~p---n~~~~~~~~---~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 111 DGIALYPFADMLNHSCDP---NCEVSFDFD---GDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEETGGGGSEEESST---SEEEEEEEE---TTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccCcHhHhecccccc---ccceeeEee---cccceEEEEECCccCCCCEEEEEEC
Confidence 468999999999999977 445544310 1357899999999999999999999
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.58 E-value=3.6e-08 Score=84.16 Aligned_cols=47 Identities=23% Similarity=0.228 Sum_probs=36.2
Q ss_pred EeeccccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCCCCCCCEEEecc
Q 010945 244 LIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQY 296 (497)
Q Consensus 244 LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~i~~GeEv~i~Y 296 (497)
+.|+++++||++.++ +.+..... .....+.++|.|+|++||||+++|
T Consensus 70 ~~~~~~~iNHsc~pN---~~~~~~~~---~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 70 KGNIARFINHSCEPN---CELLFVEV---NGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred cCcHHHeeCCCCCCC---EEEEEEEE---CCCcEEEEEECCCcCCCCEEeecC
Confidence 899999999999874 34433210 012369999999999999999999
No 6
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=94.10 E-value=0.056 Score=54.71 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=36.6
Q ss_pred eEEeeccccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCCCCCCCEEEeccCC
Q 010945 242 LVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDL 298 (497)
Q Consensus 242 ~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~i~~GeEv~i~YG~ 298 (497)
+.|=|-+ ++||+..+ |+++...| .+...+++.|||++||||+.-||.
T Consensus 192 LwLGPaa-fINHDCrp---nCkFvs~g------~~tacvkvlRDIePGeEITcFYgs 238 (453)
T KOG2589|consen 192 LWLGPAA-FINHDCRP---NCKFVSTG------RDTACVKVLRDIEPGEEITCFYGS 238 (453)
T ss_pred heeccHH-hhcCCCCC---CceeecCC------CceeeeehhhcCCCCceeEEeecc
Confidence 4566644 79999988 44565432 357889999999999999999996
No 7
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=0.061 Score=58.68 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=38.1
Q ss_pred ccccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCCCCCCCEEEeccCC
Q 010945 247 LADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDL 298 (497)
Q Consensus 247 ~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~i~~GeEv~i~YG~ 298 (497)
++=++||+++|++..-.|.+.+ ...+-+-|.+.|++||||+..|+-
T Consensus 193 laRFiNHSC~PNa~~~KWtV~~------~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 193 LARFINHSCDPNAEVQKWTVPD------ELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred HHHhhcCCCCCCceeeeeeeCC------eeEEEEeEecccCCCceeeEeccc
Confidence 4567899999988777898863 456777889999999999999973
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=93.52 E-value=0.063 Score=52.58 Aligned_cols=52 Identities=27% Similarity=0.310 Sum_probs=36.7
Q ss_pred cccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCCCCCCCEEEeccCCCCChHHHH
Q 010945 248 ADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNKSNAELA 306 (497)
Q Consensus 248 ~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~i~~GeEv~i~YG~~~sN~~LL 306 (497)
.-|+||+-..+...--.+++ ....+.+.|.++|.+|||++..||. +|-+.++
T Consensus 334 GRLINHS~~gNl~TKvv~Id------g~pHLiLvA~rdIa~GEELlYDYGD-RSkesi~ 385 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEID------GSPHLILVARRDIAQGEELLYDYGD-RSKESIA 385 (392)
T ss_pred hhhhcccccCcceeeEEEec------CCceEEEEeccccccchhhhhhccc-cchhHHh
Confidence 45789987554311112333 2568999999999999999999996 7765544
No 9
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=84.27 E-value=0.95 Score=52.63 Aligned_cols=45 Identities=29% Similarity=0.366 Sum_probs=34.4
Q ss_pred ccccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCCCCCCCEEEeccC
Q 010945 247 LADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYD 297 (497)
Q Consensus 247 ~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~i~~GeEv~i~YG 297 (497)
++=++||++.+++ +...+.-. ++..++++|.|+|.+||||+..|-
T Consensus 939 iAr~InHsC~PNC--yakvi~V~----g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNC--YAKVITVE----GDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCc--eeeEEEec----CeeEEEEEEecccccCceeeeecc
Confidence 5667999999975 33333211 255899999999999999999996
No 10
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=83.78 E-value=0.95 Score=49.52 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=32.1
Q ss_pred ccccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCCCCCCCEEEeccC
Q 010945 247 LADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYD 297 (497)
Q Consensus 247 ~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~i~~GeEv~i~YG 297 (497)
.+-++||+.++++---...+.| +..+-+.|.|.|.+|||+|..|+
T Consensus 665 k~rFANHS~nPNCYAkvm~V~G------dhRIGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAG------DHRIGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecC------CcceeeeehhhcccCceeeeeec
Confidence 3556899998754111122333 45677999999999999999998
No 11
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=80.71 E-value=1.5 Score=50.23 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=36.3
Q ss_pred cccCCCCCCCCCceeEecCCCccCCCceEEEEeCCCCCCCCEEEeccCC
Q 010945 250 LINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDL 298 (497)
Q Consensus 250 m~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~i~~GeEv~i~YG~ 298 (497)
+.||++.+++....|.+.| .-.+.+.|.+||.+||||+..|--
T Consensus 1253 finhscKPNc~~qkwSVNG------~~Rv~L~A~rDi~kGEELtYDYN~ 1295 (1306)
T KOG1083|consen 1253 FINHSCKPNCEMQKWSVNG------EYRVGLFALRDLPKGEELTYDYNF 1295 (1306)
T ss_pred ccccccCCCCccccccccc------eeeeeeeecCCCCCCceEEEeccc
Confidence 4789999888778898864 456888999999999999999873
No 12
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=70.91 E-value=2.2 Score=46.09 Aligned_cols=49 Identities=29% Similarity=0.347 Sum_probs=33.2
Q ss_pred eccccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCCCCCCCEEEeccCCCC
Q 010945 246 PLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDLNK 300 (497)
Q Consensus 246 P~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~i~~GeEv~i~YG~~~ 300 (497)
.+.=++||+..+++........ | ...+.+++.+||.+||||.+.||..+
T Consensus 404 ~~~r~~nHS~~pN~~~~~~~~~--g----~~~~~~~~~rDI~~geEl~~dy~~~~ 452 (480)
T COG2940 404 DVARFINHSCTPNCEASPIEVN--G----IFKISIYAIRDIKAGEELTYDYGPSL 452 (480)
T ss_pred cccceeecCCCCCcceeccccc--c----cceeeecccccchhhhhhcccccccc
Confidence 3444899999875421111111 1 23677889999999999999999633
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=60.00 E-value=8.2 Score=40.20 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=33.1
Q ss_pred ccccccCCCCCCCCCceeEe-cCCCccCCCceEEEEeCCCCCCCCEEEeccCC
Q 010945 247 LADLINHSPGITTEDYAYEI-KGAGLFSRDLLFSLRTPVPVKAGEQVLIQYDL 298 (497)
Q Consensus 247 ~~Dm~NH~~~~~~~~~~~~~-~~~g~~~~~~~~~~~a~~~i~~GeEv~i~YG~ 298 (497)
++=++||+..++. .|.. ..++....-..+.+.|.++|.+|+|++..||.
T Consensus 272 v~RfinHSC~PN~---~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~ 321 (364)
T KOG1082|consen 272 VARFINHSCSPNL---LYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGK 321 (364)
T ss_pred ccccccCCCCccc---eeeeeeecCCccchheeeeeeccccCCCcccchhhcc
Confidence 3557899998843 3332 11111122345778899999999999999996
No 14
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=37.36 E-value=41 Score=28.21 Aligned_cols=54 Identities=22% Similarity=0.545 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhcCcccCCCCceEEeeccccccCCCCCCCCCceeEecCCCccCCCceEEEEeCCCCCCCCEEEec
Q 010945 216 PITLDDFLWAFGILRSRAFSRLRGQNLVLIPLADLINHSPGITTEDYAYEIKGAGLFSRDLLFSLRTPVPVKAGEQVLIQ 295 (497)
Q Consensus 216 ~~t~~~f~WA~~iv~SRaf~~~~g~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~i~~GeEv~i~ 295 (497)
..-+|.|+|+.-++-+|+.-- ||++-. ...++| -..++..+++.|++|.+.
T Consensus 8 ~mRLDKwL~~aR~~KrRslAk------------~~~~~G--------rV~vNG---------~~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 8 RMRLDKWLWAARFIKRRSLAK------------EMIEGG--------RVKVNG---------QRAKPSKEVKVGDILTIR 58 (100)
T ss_pred ceehHHHHHHHHHhhhHHHHH------------HHHHCC--------eEEECC---------EEcccccccCCCCEEEEE
Confidence 346899999999999999852 222211 122221 223778999999999999
Q ss_pred cCC
Q 010945 296 YDL 298 (497)
Q Consensus 296 YG~ 298 (497)
||.
T Consensus 59 ~~~ 61 (100)
T COG1188 59 FGN 61 (100)
T ss_pred eCC
Confidence 995
No 15
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=34.67 E-value=32 Score=34.25 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.3
Q ss_pred CceEEEEccCCCCCcEEEEecCCcc
Q 010945 90 EGLGLVAQRDIAKNEVVLEVPMKFW 114 (497)
Q Consensus 90 ~GrGl~A~~~I~~ge~ll~IP~~~~ 114 (497)
.||||+|+.+++.||.|++---+++
T Consensus 266 KGRGv~a~~~F~rgdFVVEY~Gdli 290 (392)
T KOG1085|consen 266 KGRGVRAKVNFERGDFVVEYRGDLI 290 (392)
T ss_pred ccceeEeecccccCceEEEEeccee
Confidence 5999999999999999988665543
No 16
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.55 E-value=1.3e+02 Score=25.35 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhhh-hhhHHHhhccccCCcCCCCceeecc
Q 010945 453 VLQQIDEIFKERELELDE-LEYYQERRLKDLGLVGEQGDIIFWE 495 (497)
Q Consensus 453 IL~~~~~~l~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~ 495 (497)
-|++-.+.|++..+.|.. ..|+.++-=+++|++.+ ||++|..
T Consensus 45 ~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~-gEivy~~ 87 (105)
T PRK00888 45 KLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKP-GETFYRI 87 (105)
T ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCC-CCEEEEe
Confidence 345555677777777766 35555555568999876 6777764
No 17
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=24.89 E-value=2.8e+02 Score=25.49 Aligned_cols=52 Identities=23% Similarity=0.104 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHH
Q 010945 401 NEELICRVVRDACKSALSGFH-TTIEEDEQLLQGGNLDPRLRIAVGVRAGEKRVLQQI 457 (497)
Q Consensus 401 nE~~~~~~L~~~~~~~L~~y~-tTieeD~~~L~~~~~~~r~~~A~~~R~~EK~IL~~~ 457 (497)
|-..+++-|++.+...-.--+ .+-+|+.+.+. .+...|..=|+.||++...-
T Consensus 111 NiaDcleKlr~~I~~~~~~~~~~~teE~~kk~r-----~~~e~an~eRL~~Kk~~s~k 163 (172)
T KOG3429|consen 111 NIADCLEKLRDIIRAAEQTPPVDPTEETIKKIR-----IRKEKANRERLQEKKVHSDK 163 (172)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----HHHHHHHHHHHHHHHhhhHH
Confidence 345677777777766554333 45566766553 67888999999999998654
No 18
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=24.34 E-value=65 Score=34.00 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=27.9
Q ss_pred ceEEEEeCCCCCCCCEEEeccCCCCChHHHHHhCC
Q 010945 276 LLFSLRTPVPVKAGEQVLIQYDLNKSNAELALDYG 310 (497)
Q Consensus 276 ~~~~~~a~~~i~~GeEv~i~YG~~~sN~~LL~~YG 310 (497)
..+-+++.++|.+|+|+.+-||. --+.+|...+|
T Consensus 122 ~~Ifyrt~r~I~p~eELlVWY~~-e~~~~L~~~~~ 155 (396)
T KOG2461|consen 122 ENIFYRTIRDIRPNEELLVWYGS-EYAEELAYGHG 155 (396)
T ss_pred CceEEEecccCCCCCeEEEEecc-chHhHhcccCC
Confidence 46778999999999999999996 34667766666
No 19
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=24.28 E-value=44 Score=24.67 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=10.6
Q ss_pred EEEEccCCCCCcEE
Q 010945 93 GLVAQRDIAKNEVV 106 (497)
Q Consensus 93 Gl~A~~~I~~ge~l 106 (497)
-++|+++|++|++|
T Consensus 3 vvVA~~di~~G~~i 16 (63)
T PF08666_consen 3 VVVAARDIPAGTVI 16 (63)
T ss_dssp EEEESSTB-TT-BE
T ss_pred EEEEeCccCCCCEE
Confidence 58999999999887
No 20
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.46 E-value=79 Score=21.28 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=15.1
Q ss_pred chHHHHHHHhhCCCCCCC
Q 010945 63 QVETFWQWLRDQKVVSPK 80 (497)
Q Consensus 63 ~~~~f~~Wl~~~G~~~~~ 80 (497)
...+|.+||.++|+..++
T Consensus 5 s~~~L~~wL~~~gi~~~~ 22 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPK 22 (38)
T ss_pred CHHHHHHHHHHcCCCCCC
Confidence 347899999999998775
No 21
>PF11186 DUF2972: Protein of unknown function (DUF2972); InterPro: IPR021353 Some members in this family of proteins with unknown function are annotated as sugar transferase proteins, however this cannot be confirmed.
Probab=20.20 E-value=1.3e+02 Score=28.41 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhHHH--hhcccc
Q 010945 444 VGVRAGEKRVLQQIDEIFKERE-LELDELEYYQE--RRLKDL 482 (497)
Q Consensus 444 ~~~R~~EK~IL~~~~~~l~~~~-~~l~~~~~~~~--r~~~~~ 482 (497)
-.+|.-=|+||..=+..+++.+ +-+++=+|||| ++-|+|
T Consensus 157 k~l~~k~K~ilD~EL~~IKq~rPDIVaSWKYYQEFEkmCkel 198 (199)
T PF11186_consen 157 KDLRRKFKKILDKELQHIKQHRPDIVASWKYYQEFEKMCKEL 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhc
Confidence 4577778999999999999998 99999999998 666654
Done!