BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010948
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZLP|A Chain A, Petal Death Protein Psr132 With Cysteine-Linked
Glutaraldehyde Forming A Thiohemiacetal Adduct
pdb|1ZLP|B Chain B, Petal Death Protein Psr132 With Cysteine-Linked
Glutaraldehyde Forming A Thiohemiacetal Adduct
Length = 318
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 165/287 (57%), Gaps = 11/287 (3%)
Query: 80 SLRQILELPGVHQGPACFDALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFISYGEMV 139
++ +++E G P DALSA +VEK AA L LPD G ++ E+V
Sbjct: 30 TMHRLIEEHGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVV 89
Query: 140 DQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRG 198
+ + IT A ++ V+ DGD G G +NV+R ++ I AG G+ LEDQV PK CGH RG
Sbjct: 90 EATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRG 149
Query: 199 RKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258
+ VV EE ++I AA +A + SD +VARTD+R LEE +RR+ + +AGAD F
Sbjct: 150 KAVVPAEEHALKIAAAREAIGD--SDFFLVARTDARAPHGLEEGIRRANLYKEAGADATF 207
Query: 259 IDALASKEEMKAFCEISPLVP--KMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316
++A A+ +E+K E+S ++ANM+E GGKTP+ P E +E+GF L+A+ L+ +
Sbjct: 208 VEAPANVDELK---EVSAKTKGLRIANMIE-GGKTPLHTPEEFKEMGFHLIAHSLTAVYA 263
Query: 317 SVRAMQDALTAI--KGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRY 361
+ RA+ + + + KG M +F E E + ++YE E ++
Sbjct: 264 TARALVNIMKILKEKGTTRDDLDQMATFSEFNELISLESWYEMESKF 310
>pdb|3FA3|A Chain A, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|B Chain B, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|C Chain C, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|D Chain D, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|E Chain E, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|F Chain F, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|G Chain G, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|H Chain H, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|I Chain I, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|J Chain J, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|K Chain K, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|L Chain L, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|M Chain M, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|N Chain N, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|O Chain O, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|P Chain P, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA4|A Chain A, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|B Chain B, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|C Chain C, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|D Chain D, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|E Chain E, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|F Chain F, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|G Chain G, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|H Chain H, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|I Chain I, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|J Chain J, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|K Chain K, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|L Chain L, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
Length = 302
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 145/262 (55%), Gaps = 3/262 (1%)
Query: 75 LSPAKSLRQILELP-GVHQGPACFDALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFI 133
++ A SLR+ LE P P +D LSA++ A+ D G
Sbjct: 3 VTAATSLRRALENPDSFIVAPGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGIC 62
Query: 134 SYGEMVDQGQLITQ-AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKG 192
+ +M ++I+ + S PVI D D GYG + V RT + Y ++G A +EDQV K
Sbjct: 63 TLNDMRANAEMISNISPSTPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQTKR 122
Query: 193 CGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA 252
CGH G+ +V + V RI+AAV AR+ GSDIV++ARTDS Q EES+ R RA DA
Sbjct: 123 CGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRAARDA 182
Query: 253 GADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312
GADV F++ + S+E + + P + NM+E G TP ++ E +E+GF+++ +P +
Sbjct: 183 GADVGFLEGITSREMARQVIQDLAGWPLLLNMVEHGA-TPSISAAEAKEMGFRIIIFPFA 241
Query: 313 LIGVSVRAMQDALTAIKGGRIP 334
+G +V AM++A+ +K IP
Sbjct: 242 ALGPAVAAMREAMEKLKRDGIP 263
>pdb|4IQD|A Chain A, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis
pdb|4IQD|B Chain B, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis
pdb|4IQE|A Chain A, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis Str. Ames
Ancestor
pdb|4IQE|B Chain B, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis Str. Ames
Ancestor
Length = 305
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 146/276 (52%), Gaps = 15/276 (5%)
Query: 83 QILELPGVHQGPACFDALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFISYGEMVDQG 142
+IL++PG H A LV + A LPD G ++ E+ ++
Sbjct: 29 EILQIPGAHDAXAA-------LVARNTGFLALYLSGAAYTASKGLPDLGIVTSTEVAERA 81
Query: 143 QLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVV 202
+ + +A +PV+ D D G+G +NV RT ++A A + +EDQ PK CGH G+K+V
Sbjct: 82 RDLVRATDLPVLVDIDTGFGGVLNVARTAVEXVEAKVAAVQIEDQQLPKKCGHLNGKKLV 141
Query: 203 SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL 262
+ EE V +IKA KE + IVARTD+R L+E++ R+ A+ AGAD +F +AL
Sbjct: 142 TTEELVQKIKAI----KEVAPSLYIVARTDARGVEGLDEAIERANAYVKAGADAIFPEAL 197
Query: 263 ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQ 322
S+EE + F P +AN E GKTP + E GF+ V YP++ + V+ +A +
Sbjct: 198 QSEEEFRLFNS-KVNAPLLANXTE-FGKTPYYSAEEFANXGFQXVIYPVTSLRVAAKAYE 255
Query: 323 DALTAIK--GGRIPSPGSMPSFQEIKETLGFNTYYE 356
+ T IK G + + + + E+ ET+ ++ + E
Sbjct: 256 NVFTLIKETGSQKDALSNXQTRSELYETISYHDFEE 291
>pdb|3LYE|A Chain A, Crystal Structure Of Oxaloacetate Acetylhydrolase
pdb|3M0J|A Chain A, Structure Of Oxaloacetate Acetylhydrolase In Complex With
The Inhibitor 3,3-Difluorooxalacetate
pdb|3M0K|A Chain A, Structure Of Oxaloacetate Acetylhydrolase In Complex With
The Product Oxalate
Length = 307
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 137/258 (53%), Gaps = 4/258 (1%)
Query: 75 LSPAKSLRQILE-LPGVHQGPACFDALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFI 133
S AK LR +LE + P +D LSA+ + A+RL PD
Sbjct: 10 FSGAKKLRHLLENTDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIA 69
Query: 134 SYGEMVDQGQLITQ--AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPK 191
+M D +I P+I D D GYG + V RTV+ YI++G AG LEDQ+ K
Sbjct: 70 QLHDMRDNADMIANLDPFGPPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTK 129
Query: 192 GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251
CGH G+KVVSR+E ++RI+AAV ++ SD V++ARTD+ Q+L EE + R RA D
Sbjct: 130 RCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARD 189
Query: 252 AGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311
GADV ++ SKE+ A P + N +E G +P++ E + +GF+++ +
Sbjct: 190 EGADVGLLEGFRSKEQAAAAVAALAPWPLLLNSVE-NGHSPLITVEEAKAMGFRIMIFSF 248
Query: 312 SLIGVSVRAMQDALTAIK 329
+ + + A+++ L ++
Sbjct: 249 ATLAPAYAAIRETLVRLR 266
>pdb|1MUM|A Chain A, Structure Of The 2-Methylisocitrate Lyase (Prpb) From
Escherichia Coli
pdb|1MUM|B Chain B, Structure Of The 2-Methylisocitrate Lyase (Prpb) From
Escherichia Coli
pdb|1OQF|A Chain A, Crystal Structure Of The 2-Methylisocitrate Lyase
pdb|1OQF|B Chain B, Crystal Structure Of The 2-Methylisocitrate Lyase
Length = 295
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 148/285 (51%), Gaps = 7/285 (2%)
Query: 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFISY 135
SP K+ R L Q +A A L ++ A L LPD G +
Sbjct: 4 SPGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTL 63
Query: 136 GEMVDQGQLITQAVSIPVIGDGDNGYGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCG 194
+++ + IT S+P++ D D G+G+ A NV RTVK IKAG AG+ +EDQV K CG
Sbjct: 64 DDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCG 123
Query: 195 HTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGA 254
H + +VS+EE V RI+AAVDA+ + D VI+ARTD+ L+ ++ R++A+ +AGA
Sbjct: 124 HRPNKAIVSKEEMVDRIRAAVDAKTD--PDFVIMARTDALAVEGLDAAIERAQAYVEAGA 181
Query: 255 DVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314
++LF +A+ + F + + VP +AN+ E G TP+ EL + YPLS
Sbjct: 182 EMLFPEAITELAMYRQFAD-AVQVPILANITEFGA-TPLFTTDELRSAHVAMALYPLSAF 239
Query: 315 GVSVRAMQDALTAIK--GGRIPSPGSMPSFQEIKETLGFNTYYEE 357
RA + ++ G + +M + E+ E++ + Y E+
Sbjct: 240 RAMNRAAEHVYNVLRQEGTQKSVIDTMQTRNELYESINYYQYEEK 284
>pdb|1UJQ|A Chain A, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|B Chain B, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|C Chain C, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|D Chain D, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1O5Q|A Chain A, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|B Chain B, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|C Chain C, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|D Chain D, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
Length = 305
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 147/287 (51%), Gaps = 9/287 (3%)
Query: 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFISY 135
SP ++ R L Q +A A L ++ A L LPD G +
Sbjct: 7 SPGQAFRAALAKENPLQIVGAINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTL 66
Query: 136 GEMVDQGQLITQAVSIPVIGDGDNGYGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCG 194
+++ + IT +P++ D D G+G+ A NV RTVK KAG A + +EDQV K CG
Sbjct: 67 DDVLTDIRRITDVCPLPLLVDADIGFGSSAFNVARTVKSIAKAGAAALHIEDQVGAKRCG 126
Query: 195 HTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGA 254
H + +VS+EE V RI+AAVDAR + + VI+ARTD+ LE +L R++A+ DAGA
Sbjct: 127 HRPNKAIVSKEEMVDRIRAAVDARTD--PNFVIMARTDALAVEGLEAALDRAQAYVDAGA 184
Query: 255 DVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314
D+LF +A+ + F +++ VP +AN+ E G TP+ EL + YPLS
Sbjct: 185 DMLFPEAITELSMYRRFADVAQ-VPILANITEFGA-TPLFTTDELRSAHVAMALYPLSAF 242
Query: 315 GVSVRAMQDALTAIK--GGRIPSPGSMPSFQEIKETLGFNTYYEEEK 359
RA + T ++ G + M + E+ E++ N Y EEK
Sbjct: 243 RAMNRAAEKVYTVLRQEGTQKNVIDIMQTRNELYESI--NYYQFEEK 287
>pdb|1XG3|A Chain A, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG3|B Chain B, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG3|C Chain C, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG3|D Chain D, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG4|A Chain A, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
pdb|1XG4|B Chain B, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
pdb|1XG4|C Chain C, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
pdb|1XG4|D Chain D, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
Length = 295
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 147/285 (51%), Gaps = 7/285 (2%)
Query: 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFISY 135
SP K+ R L Q +A A L ++ A L LPD G +
Sbjct: 4 SPGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTL 63
Query: 136 GEMVDQGQLITQAVSIPVIGDGDNGYGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCG 194
+++ + IT S+P++ D D G+G+ A NV RTVK IKAG AG+ +EDQV K G
Sbjct: 64 DDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSG 123
Query: 195 HTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGA 254
H + +VS+EE V RI+AAVDA+ + D VI+ARTD+ L+ ++ R++A+ +AGA
Sbjct: 124 HRPNKAIVSKEEMVDRIRAAVDAKTD--PDFVIMARTDALAVEGLDAAIERAQAYVEAGA 181
Query: 255 DVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314
++LF +A+ + F + + VP +AN+ E G TP+ EL + YPLS
Sbjct: 182 EMLFPEAITELAMYRQFAD-AVQVPILANITEFGA-TPLFTTDELRSAHVAMALYPLSAF 239
Query: 315 GVSVRAMQDALTAIK--GGRIPSPGSMPSFQEIKETLGFNTYYEE 357
RA + ++ G + +M + E+ E++ + Y E+
Sbjct: 240 RAMNRAAEHVYNVLRQEGTQKSVIDTMQTRNELYESINYYQYEEK 284
>pdb|3EOO|A Chain A, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|B Chain B, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|C Chain C, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|D Chain D, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|E Chain E, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|F Chain F, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|G Chain G, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|H Chain H, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|I Chain I, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|J Chain J, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|K Chain K, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|L Chain L, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|M Chain M, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|N Chain N, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|O Chain O, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|P Chain P, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
Length = 298
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 140/265 (52%), Gaps = 14/265 (5%)
Query: 99 ALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158
A +AK+ E A L +PD G + +++ IT A ++P++ D D
Sbjct: 32 AYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDID 91
Query: 159 NGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDAR 218
G+G A N+ RT++ +IKAG + LEDQV K CGH G++ V E V RIKAAVDAR
Sbjct: 92 TGWGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDAR 151
Query: 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLV 278
+ VI+ARTD+ A ++ ++ R+ A+ +AGAD++F +A+ + ++ + F E + V
Sbjct: 152 TD--ETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAMKTLDDYRRFKE-AVKV 208
Query: 279 PKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI------KGGR 332
P +AN+ E G TP+ L+EL V L G + RAM A G +
Sbjct: 209 PILANLTE-FGSTPLFT---LDELKGANVDIALYCCG-AYRAMNKAALNFYETVRRDGTQ 263
Query: 333 IPSPGSMPSFQEIKETLGFNTYYEE 357
+ +M + ++ + LG+ Y E+
Sbjct: 264 KAAVPTMQTRAQLYDYLGYYAYEEK 288
>pdb|3B8I|A Chain A, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+.
pdb|3B8I|B Chain B, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+.
pdb|3B8I|C Chain C, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+.
pdb|3B8I|D Chain D, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+.
pdb|3B8I|E Chain E, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+.
pdb|3B8I|F Chain F, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+
Length = 287
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 8/251 (3%)
Query: 81 LRQILELPGVHQGPACFDALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFISYGEMVD 140
R +L+ + + FD +SA++ LA PD I+ E V+
Sbjct: 13 FRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVE 72
Query: 141 QGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK 200
Q I + +PVI D D+GYGNA+NV RTV +AG A + +ED + P G +
Sbjct: 73 QATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGR-KSTD 131
Query: 201 VVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260
++ EE V +I+AA++AR + + I+ART++ + + ++ ++R+ A+ +AGAD + +
Sbjct: 132 LICVEEGVGKIRAALEARVDPA--LTIIARTNA-ELIDVDAVIQRTLAYQEAGADGICLV 188
Query: 261 ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRA 320
+ ++A E +P ML G + + L LG ++V + +++A
Sbjct: 189 GVRDFAHLEAIAE-HLHIPL---MLVTYGNPQLRDDARLARLGVRVVVNGHAAYFAAIKA 244
Query: 321 MQDALTAIKGG 331
D L +G
Sbjct: 245 TYDCLREERGA 255
>pdb|2DUA|A Chain A, Crystal Structure Of Phosphonopyruvate Hydrolase Complex
With Oxalate And Mg++
pdb|2HJP|A Chain A, Crystal Structure Of Phosphonopyruvate Hydrolase Complex
With Phosphonopyruvate And Mg++
pdb|2HRW|A Chain A, Crystal Structure Of Phosphonopyruvate Hydrolase
Length = 290
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 142/303 (46%), Gaps = 31/303 (10%)
Query: 75 LSPAKSLRQILELPGVHQGPACFDALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFIS 134
++ ++LR L+ + A + L AKL E+ A+ A+PD +S
Sbjct: 1 MTKNQALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSAS-YAVPDANILS 59
Query: 135 YGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCG 194
++ + I VSIP+I D D G+GNA+NV V Y AG + I++ED+ PK
Sbjct: 60 MSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTS 119
Query: 195 -HTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA-LSLEESLRRSRAFADA 252
T GR+ + R E + K A + D V++AR ++ A L +E++RR +A+ +A
Sbjct: 120 LRTDGRQELVRIEE-FQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEA 178
Query: 253 GADVLFIDA-LASKEEMKAFCEISPLVPKMANMLEGGGKTP-ILNPLELEELGFKLVAYP 310
GAD + I + + +E+ AF + P GK P +L P +L +A
Sbjct: 179 GADAILIHSRQKTPDEILAFVKSWP------------GKVPLVLVPTAYPQLTEADIA-A 225
Query: 311 LSLIGVSV---RAMQDALTAIK---------GGRIPSPGSMPSFQEIKETLGFNTYYEEE 358
LS +G+ + A++ A+ A++ GG ++PS +EI E G E
Sbjct: 226 LSKVGIVIYGNHAIRAAVGAVREVFARIRRDGGIREVDAALPSVKEIIELQGDERMRAVE 285
Query: 359 KRY 361
RY
Sbjct: 286 ARY 288
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1S2T|A Chain A, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2T|B Chain B, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2V|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|C Chain C, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|D Chain D, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2W|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase In High
Ionic Strength
Length = 295
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 107/215 (49%), Gaps = 17/215 (7%)
Query: 122 AARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181
+A+L + D+ S+ ++V+ + ++ A +P++ D D GYGN N +R V+ G AG
Sbjct: 51 SAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAG 110
Query: 182 IILEDQVSPKGCGHTRGRK--VVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA-LS 238
LED++ PK GR + EE ++IKA D+ ++ D IVAR ++ A
Sbjct: 111 ACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDS--QTDPDFCIVARVEAFIAGWG 168
Query: 239 LEESLRRSRAFADAGADVLFIDALASKEE-----MKAFCEISPLVPKMANMLEGGGKTPI 293
L+E+L+R+ A+ +AGAD + + + + MKA+ P+V KTP
Sbjct: 169 LDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYY----KTPT 224
Query: 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328
+ ++G +V + + SV A+Q I
Sbjct: 225 DH---FRDMGVSMVIWANHNLRASVSAIQQTTKQI 256
>pdb|1PYM|A Chain A, Phosphoenolpyruvate Mutase From Mollusk In With Bound
Mg2-oxalate
pdb|1PYM|B Chain B, Phosphoenolpyruvate Mutase From Mollusk In With Bound
Mg2-oxalate
Length = 295
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 5/140 (3%)
Query: 122 AARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181
+A+L + D+ S+ ++V+ + + A +P++ D D GYGN N +R V+ G AG
Sbjct: 51 SAQLGVRDSNEASWTQVVEVLEFXSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAG 110
Query: 182 IILEDQVSPKGCGHTRGRK--VVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA-LS 238
LED++ PK GR + EE ++IKA D+ ++ D IVAR ++ A
Sbjct: 111 ACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDS--QTDPDFCIVARVEAFIAGWG 168
Query: 239 LEESLRRSRAFADAGADVLF 258
L+E+L+R+ A+ +AGAD +
Sbjct: 169 LDEALKRAEAYRNAGADAIL 188
>pdb|1S2U|A Chain A, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
pdb|1S2U|B Chain B, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
Length = 295
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 17/215 (7%)
Query: 122 AARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181
+A+L + + S+ ++V+ + ++ A +P++ D D GYGN N +R V+ G AG
Sbjct: 51 SAQLGVRASNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAG 110
Query: 182 IILEDQVSPKGCGHTRGRK--VVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA-LS 238
LED++ PK GR + EE ++IKA D+ ++ D IVAR ++ A
Sbjct: 111 ACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDS--QTDPDFCIVARVEAFIAGWG 168
Query: 239 LEESLRRSRAFADAGADVLFIDALASKEE-----MKAFCEISPLVPKMANMLEGGGKTPI 293
L+E+L+R+ A+ +AGAD + + + + MKA+ P+V KTP
Sbjct: 169 LDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYY----KTPT 224
Query: 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328
+ ++G +V + + SV A+Q I
Sbjct: 225 DH---FRDMGVSMVIWANHNLRASVSAIQQTTKQI 256
>pdb|2ZE3|A Chain A, Crystal Structure Of Dfa0005 Complexed With
Alpha-Ketoglutarate: A Novel Member Of The IclPEPM
SUPERFAMILY FROM ALKALI-Tolerant Deinococcus Ficus
Length = 275
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 19/190 (10%)
Query: 94 PACFDALSAKLVEKXXXXXXXXXXXXXXAARLALPDTGFISYGEMVDQGQLITQAVSIPV 153
P +D SA+L+E AR D ++ EM + + I +AV+IPV
Sbjct: 21 PNAWDVASARLLEAAGFTAIGTTSAGIAHAR-GRTDGQTLTRDEMGREVEAIVRAVAIPV 79
Query: 154 IGDGDNGYGNA-MNVKRTVKGYIKAGFAGIILEDQ--VSPKGCGHTRGRKVVSREEAVMR 210
D + GYG+A +V+RTV+ + G AG+ LED ++P ++ + + R
Sbjct: 80 NADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATGLTPT--------ELYDLDSQLRR 131
Query: 211 IKAAVDARKESGSDIVIVARTDS-------RQALSLEESLRRSRAFADAGADVLFIDALA 263
I+AA A SG + + ARTD+ L E++RR +A+ADAGAD +F+
Sbjct: 132 IEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLAL 191
Query: 264 SKEEMKAFCE 273
++++A +
Sbjct: 192 QSQDIRALAD 201
>pdb|3I4E|A Chain A, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|B Chain B, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|C Chain C, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|D Chain D, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
Length = 439
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMR 210
P++ D + G+G +N +K I+AG +G+ EDQ+ S K CGH G+ +V EAV +
Sbjct: 154 PIVADAEAGFGGVLNAFELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAK 213
Query: 211 IKAAVDARKESGSDIVIVARTDSRQA 236
+ AA A G+ V+VARTD+ A
Sbjct: 214 LTAARLAADVMGTPTVLVARTDAEAA 239
>pdb|3EOL|A Chain A, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
pdb|3EOL|B Chain B, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
Length = 433
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMR 210
P++ D + G+G+ ++ +K YI+AG AG+ EDQ+ S K CGH G+ ++ +
Sbjct: 147 PIVADAEAGFGDPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRN 206
Query: 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESL-RRSRAFAD 251
+ AA A G+ +IVARTD+ A L + R + F D
Sbjct: 207 LNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVD 248
>pdb|3E5B|A Chain A, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|B Chain B, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|C Chain C, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|D Chain D, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3OQ8|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3P0X|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
Length = 433
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMR 210
P++ D + G+G ++ +K YI+AG AG+ EDQ+ S K CGH G+ ++ +
Sbjct: 147 PIVADAEAGFGGPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRN 206
Query: 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESL-RRSRAFAD 251
+ AA A G+ +IVARTD+ A L + R + F D
Sbjct: 207 LNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVD 248
>pdb|1IGW|A Chain A, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
pdb|1IGW|B Chain B, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
pdb|1IGW|C Chain C, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
pdb|1IGW|D Chain D, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
Length = 434
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVM 209
+P++ D + G+G +N +K I+AG A + EDQ+ S K CGH G+ +V +EA+
Sbjct: 152 LPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQ 211
Query: 210 RIKAAVDARKESGSDIVIVARTDSRQA 236
++ AA +G ++VARTD+ A
Sbjct: 212 KLVAARLCADVTGVPTLLVARTDADAA 238
>pdb|3LG3|A Chain A, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia
Pestis Co92
pdb|3LG3|B Chain B, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia
Pestis Co92
Length = 435
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSP-KGCGHTRGRKVVSREEAVM 209
+P++ D + G+G +N K I+AG AG+ EDQ++ K CGH G+ +V +EA+
Sbjct: 153 LPIVADAEAGFGGVLNAFELXKAXIEAGAAGVHFEDQLAAVKKCGHXGGKVLVPTQEAIQ 212
Query: 210 RIKAAVDARKESGSDIVIVARTDSRQA 236
++ AA A G +++ARTD+ A
Sbjct: 213 KLVAARLAADVLGVPTLLIARTDADAA 239
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMR 210
P++ DG+ G+G A+NV K I AG AG EDQ+ S K CGH G+ ++ ++ +
Sbjct: 150 PIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRT 209
Query: 211 IKAAVDARKESGSDIVIVARTDSRQA 236
+ +A A + V++ARTD+ A
Sbjct: 210 LTSARLAADVADVPTVVIARTDAEAA 235
>pdb|1DQU|A Chain A, Crystal Structure Of The Isocitrate Lyase From Aspergillus
Nidulans
Length = 538
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMR 210
P+I D D G+G V + K +++ G AGI +EDQ K CGH G+ +V E + R
Sbjct: 164 PIIADADTGHGGLTAVMKLTKLFVERGAAGIHIEDQAPGTKKCGHMAGKVLVPISEHINR 223
Query: 211 IKAAVDARKESGSDIVIVARTDSRQA 236
+ A G+D++ +ARTDS A
Sbjct: 224 LVAIRAQADIMGTDLLAIARTDSEAA 249
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMR 210
P++ DG+ G+G A+NV K I AG AG EDQ+ S K GH G+ ++ ++ +
Sbjct: 150 PIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLASEKKSGHLGGKVLIPTQQHIRT 209
Query: 211 IKAAVDARKESGSDIVIVARTDSRQA 236
+ +A A + V++ARTD+ A
Sbjct: 210 LTSARLAADVADVPTVVIARTDAEAA 235
>pdb|2QIW|A Chain A, Crystal Structure Of A Putative Phosphoenolpyruvate
Phosphonomutase (ncgl1015, Cgl1060) From Corynebacterium
Glutamicum Atcc 13032 At 1.80 A Resolution
pdb|2QIW|B Chain B, Crystal Structure Of A Putative Phosphoenolpyruvate
Phosphonomutase (ncgl1015, Cgl1060) From Corynebacterium
Glutamicum Atcc 13032 At 1.80 A Resolution
Length = 255
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 20/205 (9%)
Query: 94 PACFDALSAKLVEKXXXXXXXXXXXXXXAARLAL--PDTGFISYGEMVDQGQLITQAVSI 151
P +D SA LVE+ A + + F Y +V + IT AVSI
Sbjct: 25 PTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENXNFADYXAVVKK---ITSAVSI 81
Query: 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRI 211
PV D ++GYG ++ + ++AG GI +ED V H+ G++V +E I
Sbjct: 82 PVSVDVESGYG--LSPADLIAQILEAGAVGINVEDVV------HSEGKRVREAQEHADYI 133
Query: 212 KAAVDARKESGSDIVIVARTDSRQ--ALSLE----ESLRRSRAFADAGADVLFIDALASK 265
AA A +G D+VI RTD+ + A E E+++R + AGA ++ L++
Sbjct: 134 AAARQAADVAGVDVVINGRTDAVKLGADVFEDPXVEAIKRIKLXEQAGARSVYPVGLSTA 193
Query: 266 EEMKAFCE-ISPLVPKMANMLEGGG 289
E+++ + +S V A+ ++G G
Sbjct: 194 EQVERLVDAVSVPVNITAHPVDGHG 218
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 196 TRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGAD 255
T R+ S EE R KA +D G+D ++ A DSR L E LRR ++ AG
Sbjct: 244 TLNRRETSVEE---RRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVA 300
Query: 256 V 256
V
Sbjct: 301 V 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,112,087
Number of Sequences: 62578
Number of extensions: 531481
Number of successful extensions: 1461
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1403
Number of HSP's gapped (non-prelim): 26
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)