Query 010948
Match_columns 497
No_of_seqs 217 out of 1718
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11320 prpB 2-methylisocitra 100.0 1.3E-72 2.7E-77 567.3 34.1 286 75-364 3-291 (292)
2 COG2513 PrpB PEP phosphonomuta 100.0 3.7E-73 8.1E-78 565.3 29.1 282 76-362 5-288 (289)
3 TIGR02317 prpB methylisocitrat 100.0 1.3E-72 2.9E-77 565.6 33.3 281 78-363 2-284 (285)
4 TIGR02319 CPEP_Pphonmut carbox 100.0 5.6E-72 1.2E-76 562.9 34.0 285 76-364 3-292 (294)
5 TIGR02321 Pphn_pyruv_hyd phosp 100.0 2.2E-69 4.9E-74 543.4 33.7 282 76-363 2-290 (290)
6 PRK15063 isocitrate lyase; Pro 100.0 6.6E-68 1.4E-72 552.0 31.3 289 40-331 4-367 (428)
7 TIGR02320 PEP_mutase phosphoen 100.0 1.4E-61 3.1E-66 486.0 31.3 267 81-353 1-285 (285)
8 PF13714 PEP_mutase: Phosphoen 100.0 6.2E-62 1.4E-66 477.5 27.0 235 81-329 1-238 (238)
9 cd00377 ICL_PEPM Members of th 100.0 3.4E-58 7.3E-63 451.3 28.9 240 81-326 1-242 (243)
10 KOG1260 Isocitrate lyase [Ener 100.0 1.4E-49 3.1E-54 411.0 14.2 400 46-459 9-474 (492)
11 TIGR01346 isocit_lyase isocitr 100.0 1.4E-45 2.9E-50 391.0 25.9 277 46-330 2-468 (527)
12 COG2224 AceA Isocitrate lyase 100.0 1.1E-44 2.4E-49 372.3 22.6 286 42-330 6-372 (433)
13 PLN02892 isocitrate lyase 100.0 1.4E-42 3.1E-47 369.7 26.1 286 43-330 20-490 (570)
14 cd06556 ICL_KPHMT Members of t 100.0 4E-40 8.6E-45 323.9 22.0 180 80-285 3-199 (240)
15 PF00463 ICL: Isocitrate lyase 100.0 4.6E-40 1E-44 348.0 24.1 278 45-330 2-467 (526)
16 PRK06498 isocitrate lyase; Pro 100.0 6.8E-38 1.5E-42 329.0 25.3 273 50-328 15-469 (531)
17 cd06557 KPHMT-like Ketopantoat 100.0 4.6E-36 1E-40 297.4 20.1 178 79-281 2-197 (254)
18 PRK00311 panB 3-methyl-2-oxobu 100.0 2.5E-35 5.5E-40 293.5 21.0 179 78-281 4-200 (264)
19 TIGR00222 panB 3-methyl-2-oxob 100.0 2.1E-30 4.6E-35 257.9 25.0 233 78-337 4-259 (263)
20 PLN02424 ketopantoate hydroxym 100.0 1.7E-28 3.7E-33 250.1 27.7 235 78-337 24-286 (332)
21 PF02548 Pantoate_transf: Keto 99.9 4.4E-26 9.6E-31 226.4 13.8 180 78-281 5-201 (261)
22 COG0413 PanB Ketopantoate hydr 99.9 2.7E-24 5.9E-29 212.3 19.8 233 78-337 4-260 (268)
23 KOG2949 Ketopantoate hydroxyme 99.8 3.2E-18 6.9E-23 166.9 14.9 180 77-280 26-223 (306)
24 cd00958 DhnA Class I fructose- 98.1 0.00046 1E-08 67.2 18.9 138 164-316 75-220 (235)
25 PRK08185 hypothetical protein; 98.0 0.0023 5E-08 65.5 23.7 216 79-326 3-244 (283)
26 PF09370 TIM-br_sig_trns: TIM- 98.0 0.00019 4.2E-09 72.6 15.5 163 79-261 5-178 (268)
27 TIGR01859 fruc_bis_ald_ fructo 97.9 0.0038 8.2E-08 63.7 23.8 212 79-326 6-246 (282)
28 PRK06801 hypothetical protein; 97.9 0.0037 8.1E-08 64.0 23.5 217 79-326 8-249 (286)
29 TIGR01949 AroFGH_arch predicte 97.9 0.00061 1.3E-08 67.9 16.1 134 167-316 92-233 (258)
30 TIGR01037 pyrD_sub1_fam dihydr 97.8 0.0037 7.9E-08 63.3 21.8 201 91-316 15-269 (300)
31 TIGR00343 pyridoxal 5'-phospha 97.8 0.0022 4.7E-08 65.7 19.1 187 80-315 4-233 (287)
32 cd02810 DHOD_DHPD_FMN Dihydroo 97.8 0.0043 9.4E-08 62.1 21.1 206 90-315 11-277 (289)
33 PRK04180 pyridoxal biosynthesi 97.8 0.00091 2E-08 68.6 16.0 186 79-314 10-238 (293)
34 PRK07259 dihydroorotate dehydr 97.7 0.0075 1.6E-07 61.1 21.6 204 90-315 14-268 (301)
35 cd04727 pdxS PdxS is a subunit 97.7 0.0038 8.2E-08 63.9 19.0 185 81-315 3-230 (283)
36 PRK07998 gatY putative fructos 97.7 0.023 5.1E-07 58.3 24.5 214 78-326 7-245 (283)
37 PRK07315 fructose-bisphosphate 97.6 0.028 6.1E-07 57.8 24.4 215 78-328 7-250 (293)
38 PRK09195 gatY tagatose-bisphos 97.6 0.02 4.2E-07 58.8 23.1 218 78-326 7-248 (284)
39 PRK12738 kbaY tagatose-bisphos 97.6 0.025 5.5E-07 58.1 23.8 217 78-326 7-248 (286)
40 PRK06806 fructose-bisphosphate 97.6 0.043 9.4E-07 56.1 25.4 213 78-325 7-245 (281)
41 cd00952 CHBPH_aldolase Trans-o 97.6 0.0016 3.5E-08 66.8 15.1 123 163-302 27-159 (309)
42 cd00947 TBP_aldolase_IIB Tagat 97.6 0.037 8.1E-07 56.6 23.9 216 80-326 4-242 (276)
43 PRK13398 3-deoxy-7-phosphohept 97.6 0.0023 5E-08 64.8 15.2 140 76-217 78-262 (266)
44 cd00954 NAL N-Acetylneuraminic 97.5 0.0029 6.2E-08 64.0 15.8 105 163-281 19-132 (288)
45 PRK12857 fructose-1,6-bisphosp 97.5 0.044 9.6E-07 56.3 23.4 218 78-326 7-248 (284)
46 PRK08610 fructose-bisphosphate 97.5 0.035 7.7E-07 57.1 22.7 218 79-326 8-249 (286)
47 cd00945 Aldolase_Class_I Class 97.5 0.017 3.6E-07 53.3 18.6 174 104-310 21-201 (201)
48 cd04740 DHOD_1B_like Dihydroor 97.5 0.037 8E-07 55.9 22.5 205 89-315 11-265 (296)
49 PRK12737 gatY tagatose-bisphos 97.5 0.04 8.8E-07 56.6 22.9 217 79-326 8-248 (284)
50 TIGR00167 cbbA ketose-bisphosp 97.5 0.036 7.7E-07 57.0 22.5 219 78-326 7-252 (288)
51 TIGR02313 HpaI-NOT-DapA 2,4-di 97.4 0.0045 9.7E-08 63.1 15.5 105 163-281 19-131 (294)
52 TIGR01858 tag_bisphos_ald clas 97.4 0.064 1.4E-06 55.1 23.3 213 79-326 6-246 (282)
53 PRK08673 3-deoxy-7-phosphohept 97.4 0.0048 1E-07 64.6 15.3 159 56-221 128-332 (335)
54 cd04732 HisA HisA. Phosphorib 97.4 0.0099 2.2E-07 57.5 16.4 177 98-315 30-224 (234)
55 PRK00748 1-(5-phosphoribosyl)- 97.3 0.0053 1.2E-07 59.4 14.1 183 97-315 30-225 (233)
56 TIGR00737 nifR3_yhdG putative 97.3 0.0086 1.9E-07 61.4 16.1 199 93-316 15-228 (319)
57 PRK13585 1-(5-phosphoribosyl)- 97.3 0.013 2.7E-07 57.3 16.3 178 98-316 33-228 (241)
58 TIGR00007 phosphoribosylformim 97.3 0.013 2.9E-07 56.8 16.1 178 98-315 29-223 (230)
59 TIGR00742 yjbN tRNA dihydrouri 97.3 0.0089 1.9E-07 62.0 15.6 197 95-316 10-229 (318)
60 TIGR00683 nanA N-acetylneurami 97.3 0.0081 1.8E-07 61.1 15.1 124 163-302 19-152 (290)
61 PRK04147 N-acetylneuraminate l 97.3 0.0069 1.5E-07 61.4 14.5 123 163-302 22-154 (293)
62 PRK07709 fructose-bisphosphate 97.2 0.086 1.9E-06 54.2 22.4 218 79-326 8-249 (285)
63 cd00945 Aldolase_Class_I Class 97.2 0.0066 1.4E-07 56.0 13.1 130 153-311 1-150 (201)
64 PLN02417 dihydrodipicolinate s 97.2 0.0075 1.6E-07 61.0 14.3 97 163-273 20-120 (280)
65 cd00951 KDGDH 5-dehydro-4-deox 97.2 0.011 2.5E-07 59.9 15.3 119 163-302 19-146 (289)
66 COG0329 DapA Dihydrodipicolina 97.2 0.012 2.5E-07 60.5 15.3 122 163-302 23-154 (299)
67 cd00331 IGPS Indole-3-glycerol 97.2 0.023 5E-07 54.8 16.4 166 100-316 35-207 (217)
68 cd04731 HisF The cyclase subun 97.2 0.0064 1.4E-07 59.6 12.7 177 101-317 32-230 (243)
69 PF00701 DHDPS: Dihydrodipicol 97.2 0.0064 1.4E-07 61.2 13.0 97 163-273 20-120 (289)
70 TIGR01361 DAHP_synth_Bsub phos 97.2 0.0097 2.1E-07 60.1 14.3 153 56-215 60-258 (260)
71 cd00953 KDG_aldolase KDG (2-ke 97.2 0.011 2.5E-07 59.6 14.8 120 163-302 18-145 (279)
72 cd00408 DHDPS-like Dihydrodipi 97.1 0.018 3.9E-07 57.5 15.8 122 163-302 16-147 (281)
73 TIGR03249 KdgD 5-dehydro-4-deo 97.1 0.015 3.2E-07 59.2 15.3 119 163-302 24-151 (296)
74 cd00950 DHDPS Dihydrodipicolin 97.1 0.012 2.7E-07 58.9 14.4 97 163-273 19-119 (284)
75 TIGR00674 dapA dihydrodipicoli 97.1 0.015 3.3E-07 58.7 14.9 96 163-272 17-116 (285)
76 PRK03170 dihydrodipicolinate s 97.1 0.019 4.2E-07 57.9 15.4 123 163-302 20-151 (292)
77 PRK05286 dihydroorotate dehydr 97.0 0.071 1.5E-06 55.7 19.7 198 102-315 75-323 (344)
78 PF01116 F_bP_aldolase: Fructo 97.0 0.045 9.8E-07 56.2 17.7 213 80-326 8-251 (287)
79 PRK13396 3-deoxy-7-phosphohept 97.0 0.018 3.9E-07 60.8 15.1 162 54-222 134-342 (352)
80 PRK05198 2-dehydro-3-deoxyphos 97.0 0.029 6.3E-07 57.1 15.9 152 59-216 54-259 (264)
81 PRK13397 3-deoxy-7-phosphohept 97.0 0.015 3.2E-07 58.8 13.8 150 56-212 50-245 (250)
82 PRK12595 bifunctional 3-deoxy- 97.0 0.022 4.7E-07 60.2 15.6 156 56-218 153-354 (360)
83 TIGR03572 WbuZ glycosyl amidat 97.0 0.021 4.6E-07 55.6 14.5 172 98-313 31-230 (232)
84 PRK07565 dihydroorotate dehydr 96.9 0.085 1.8E-06 54.7 18.8 182 125-328 79-286 (334)
85 PRK03620 5-dehydro-4-deoxygluc 96.9 0.026 5.6E-07 57.7 14.8 119 163-302 26-153 (303)
86 cd02940 DHPD_FMN Dihydropyrimi 96.9 0.12 2.6E-06 52.8 19.4 110 135-259 83-199 (299)
87 PRK00278 trpC indole-3-glycero 96.9 0.038 8.2E-07 55.7 15.6 167 99-316 73-246 (260)
88 cd04738 DHOD_2_like Dihydrooro 96.9 0.16 3.5E-06 52.6 20.4 198 103-315 66-314 (327)
89 PRK10415 tRNA-dihydrouridine s 96.8 0.055 1.2E-06 56.1 16.9 203 90-315 12-229 (321)
90 PRK05835 fructose-bisphosphate 96.8 0.53 1.1E-05 49.1 23.3 218 78-326 6-271 (307)
91 TIGR00736 nifR3_rel_arch TIM-b 96.8 0.084 1.8E-06 52.7 16.9 200 95-313 3-223 (231)
92 PRK13399 fructose-1,6-bisphosp 96.8 0.71 1.5E-05 48.9 24.5 224 79-326 8-293 (347)
93 PRK07084 fructose-bisphosphate 96.7 0.96 2.1E-05 47.5 25.0 222 78-326 13-284 (321)
94 PRK11815 tRNA-dihydrouridine s 96.7 0.03 6.6E-07 58.2 14.1 202 90-316 13-239 (333)
95 cd04740 DHOD_1B_like Dihydroor 96.7 0.12 2.5E-06 52.3 17.9 156 99-274 105-276 (296)
96 PRK12457 2-dehydro-3-deoxyphos 96.7 0.073 1.6E-06 54.7 16.1 149 59-213 60-264 (281)
97 COG0042 tRNA-dihydrouridine sy 96.7 0.051 1.1E-06 56.6 15.1 206 87-313 10-231 (323)
98 TIGR01521 FruBisAldo_II_B fruc 96.6 0.76 1.6E-05 48.7 23.6 224 79-326 6-291 (347)
99 cd04739 DHOD_like Dihydroorota 96.6 0.1 2.2E-06 54.1 17.1 176 134-328 83-284 (325)
100 CHL00162 thiG thiamin biosynth 96.6 0.023 5E-07 57.7 11.6 165 25-219 67-242 (267)
101 cd02801 DUS_like_FMN Dihydrour 96.6 0.084 1.8E-06 50.8 15.1 196 95-315 9-218 (231)
102 cd02930 DCR_FMN 2,4-dienoyl-Co 96.6 0.14 3E-06 53.5 17.8 211 109-333 46-324 (353)
103 cd02803 OYE_like_FMN_family Ol 96.6 0.048 1E-06 55.6 14.0 140 166-314 142-315 (327)
104 PRK10550 tRNA-dihydrouridine s 96.6 0.034 7.4E-07 57.5 13.0 228 93-349 8-253 (312)
105 cd02809 alpha_hydroxyacid_oxid 96.5 0.27 5.8E-06 50.2 19.1 170 99-317 84-263 (299)
106 PRK05437 isopentenyl pyrophosp 96.5 0.57 1.2E-05 49.3 21.7 216 99-357 80-331 (352)
107 PRK10128 2-keto-3-deoxy-L-rham 96.5 0.37 8.1E-06 49.1 19.5 88 80-185 8-97 (267)
108 PLN03033 2-dehydro-3-deoxyphos 96.5 0.13 2.7E-06 53.1 15.9 151 59-215 60-269 (290)
109 PRK07226 fructose-bisphosphate 96.4 0.98 2.1E-05 45.5 22.0 166 150-331 73-253 (267)
110 PF05690 ThiG: Thiazole biosyn 96.4 0.023 5.1E-07 57.1 10.2 171 18-219 52-228 (247)
111 cd08210 RLP_RrRLP Ribulose bis 96.4 0.18 4E-06 53.5 17.4 159 142-312 117-286 (364)
112 PF01207 Dus: Dihydrouridine s 96.4 0.0075 1.6E-07 62.0 6.7 146 151-312 54-215 (309)
113 PLN02591 tryptophan synthase 96.3 0.25 5.3E-06 49.9 17.0 173 103-315 23-223 (250)
114 cd02801 DUS_like_FMN Dihydrour 96.3 0.11 2.5E-06 49.9 14.1 94 93-187 60-160 (231)
115 TIGR02151 IPP_isom_2 isopenten 96.2 0.37 7.9E-06 50.3 18.3 188 98-318 72-291 (333)
116 PLN02424 ketopantoate hydroxym 96.2 0.045 9.8E-07 57.4 11.5 140 169-315 46-207 (332)
117 PRK12331 oxaloacetate decarbox 96.2 0.32 6.9E-06 53.0 18.5 310 81-422 11-345 (448)
118 TIGR00262 trpA tryptophan synt 96.2 0.46 1E-05 47.9 18.4 174 102-316 30-233 (256)
119 cd02811 IDI-2_FMN Isopentenyl- 96.2 0.71 1.5E-05 48.0 20.3 216 99-357 72-324 (326)
120 cd02932 OYE_YqiM_FMN Old yello 96.2 0.12 2.5E-06 53.5 14.6 139 166-313 155-323 (336)
121 cd08205 RuBisCO_IV_RLP Ribulos 96.2 0.087 1.9E-06 55.8 13.5 109 142-262 121-232 (367)
122 PRK07259 dihydroorotate dehydr 96.1 0.12 2.7E-06 52.4 14.0 153 101-274 109-279 (301)
123 cd02940 DHPD_FMN Dihydropyrimi 96.1 0.14 3.1E-06 52.3 14.4 142 101-260 118-281 (299)
124 PRK09196 fructose-1,6-bisphosp 96.1 2.4 5.2E-05 45.0 24.7 225 78-326 7-293 (347)
125 cd02810 DHOD_DHPD_FMN Dihydroo 96.1 0.12 2.6E-06 51.8 13.6 82 101-187 116-198 (289)
126 PRK02083 imidazole glycerol ph 96.1 0.1 2.2E-06 51.7 12.9 174 101-316 35-233 (253)
127 cd00564 TMP_TenI Thiamine mono 96.1 0.12 2.6E-06 47.6 12.6 129 137-315 43-183 (196)
128 cd00453 FTBP_aldolase_II Fruct 96.0 2.6 5.6E-05 44.7 23.5 228 80-327 4-289 (340)
129 TIGR00737 nifR3_yhdG putative 95.9 0.2 4.3E-06 51.5 14.4 164 88-274 62-238 (319)
130 PRK00208 thiG thiazole synthas 95.9 0.13 2.8E-06 52.1 12.6 173 19-219 53-228 (250)
131 PRK09197 fructose-bisphosphate 95.9 1.8 3.8E-05 46.1 21.4 228 79-327 11-296 (350)
132 cd00946 FBP_aldolase_IIA Class 95.9 1.9 4.1E-05 45.8 21.7 232 79-327 6-292 (345)
133 PRK10558 alpha-dehydro-beta-de 95.8 1.2 2.6E-05 45.0 19.3 87 80-184 9-97 (256)
134 TIGR01362 KDO8P_synth 3-deoxy- 95.8 0.46 1E-05 48.4 16.2 150 59-214 46-249 (258)
135 cd04734 OYE_like_3_FMN Old yel 95.8 0.86 1.9E-05 47.7 18.9 91 166-260 142-249 (343)
136 cd03174 DRE_TIM_metallolyase D 95.7 0.26 5.5E-06 48.3 13.8 154 102-274 25-183 (265)
137 cd04728 ThiG Thiazole synthase 95.7 0.17 3.8E-06 51.2 12.7 173 19-219 53-228 (248)
138 cd04741 DHOD_1A_like Dihydroor 95.7 2.9 6.4E-05 42.8 22.0 112 133-259 71-192 (294)
139 PRK04302 triosephosphate isome 95.7 0.28 6.2E-06 47.9 13.9 139 147-316 53-208 (223)
140 PRK01130 N-acetylmannosamine-6 95.7 0.89 1.9E-05 44.1 17.2 145 140-315 46-207 (221)
141 PRK14024 phosphoribosyl isomer 95.7 0.65 1.4E-05 46.1 16.5 174 98-315 33-227 (241)
142 PRK08318 dihydropyrimidine deh 95.7 0.38 8.3E-06 51.3 15.9 185 125-328 70-300 (420)
143 PRK00043 thiE thiamine-phospha 95.6 0.87 1.9E-05 43.1 16.7 153 104-315 29-193 (212)
144 cd02911 arch_FMN Archeal FMN-b 95.6 0.72 1.6E-05 45.8 16.6 197 93-311 7-221 (233)
145 TIGR00222 panB 3-methyl-2-oxob 95.5 0.42 9.1E-06 48.8 14.9 135 170-313 27-183 (263)
146 TIGR00735 hisF imidazoleglycer 95.5 0.44 9.5E-06 47.5 14.8 176 98-314 31-233 (254)
147 PF02548 Pantoate_transf: Keto 95.5 0.1 2.2E-06 53.2 10.4 106 169-281 27-135 (261)
148 PRK14041 oxaloacetate decarbox 95.5 0.7 1.5E-05 50.7 17.4 245 100-381 29-294 (467)
149 cd04730 NPD_like 2-Nitropropan 95.5 0.76 1.6E-05 44.4 16.0 170 93-317 10-192 (236)
150 TIGR01037 pyrD_sub1_fam dihydr 95.5 0.53 1.2E-05 47.7 15.5 79 102-186 109-190 (300)
151 PRK08318 dihydropyrimidine deh 95.5 0.28 6.1E-06 52.3 14.0 160 101-274 118-299 (420)
152 TIGR00126 deoC deoxyribose-pho 95.4 0.33 7.3E-06 47.8 13.4 142 150-307 55-201 (211)
153 CHL00200 trpA tryptophan synth 95.4 0.92 2E-05 46.1 16.8 176 102-316 35-237 (263)
154 PRK09282 pyruvate carboxylase 95.4 0.72 1.6E-05 52.0 17.5 267 81-382 11-296 (592)
155 PF01791 DeoC: DeoC/LacD famil 95.4 0.27 5.8E-06 48.3 12.6 146 105-276 28-189 (236)
156 cd04733 OYE_like_2_FMN Old yel 95.3 0.48 1E-05 49.2 14.9 91 166-260 150-256 (338)
157 cd06557 KPHMT-like Ketopantoat 95.3 0.082 1.8E-06 53.5 8.9 137 170-313 24-181 (254)
158 PF03932 CutC: CutC family; I 95.2 2.9 6.3E-05 41.2 19.0 179 94-308 5-197 (201)
159 PRK14042 pyruvate carboxylase 95.2 1.5 3.1E-05 49.7 19.0 206 101-330 31-251 (596)
160 PRK13111 trpA tryptophan synth 95.2 1.6 3.4E-05 44.4 17.5 197 80-318 2-236 (258)
161 PRK12330 oxaloacetate decarbox 95.1 2.3 5.1E-05 47.1 20.0 255 80-363 11-282 (499)
162 PRK15452 putative protease; Pr 95.0 1.9 4E-05 47.1 18.6 147 95-276 9-157 (443)
163 COG0826 Collagenase and relate 94.9 1.6 3.6E-05 46.1 17.6 146 97-276 14-160 (347)
164 PRK09250 fructose-bisphosphate 94.9 1.7 3.8E-05 46.1 17.6 164 77-271 48-248 (348)
165 COG5564 Predicted TIM-barrel e 94.9 0.24 5.1E-06 49.8 10.4 164 78-261 10-184 (276)
166 TIGR00736 nifR3_rel_arch TIM-b 94.9 0.34 7.3E-06 48.5 11.7 101 134-259 119-219 (231)
167 PRK12581 oxaloacetate decarbox 94.9 2.6 5.7E-05 46.4 19.4 234 101-363 40-288 (468)
168 PRK05692 hydroxymethylglutaryl 94.9 1.9 4.2E-05 44.2 17.4 138 98-257 81-228 (287)
169 TIGR03239 GarL 2-dehydro-3-deo 94.8 4.7 0.0001 40.6 19.8 87 80-184 2-90 (249)
170 PRK00311 panB 3-methyl-2-oxobu 94.8 0.12 2.6E-06 52.6 8.5 136 170-312 27-183 (264)
171 cd02931 ER_like_FMN Enoate red 94.7 0.81 1.7E-05 48.6 14.7 152 168-333 153-353 (382)
172 PLN02858 fructose-bisphosphate 94.7 3.2 6.8E-05 51.3 21.4 212 81-323 1106-1344(1378)
173 cd04728 ThiG Thiazole synthase 94.6 1.3 2.9E-05 44.9 15.2 126 163-315 74-209 (248)
174 PRK01033 imidazole glycerol ph 94.6 1.1 2.5E-05 44.9 14.7 178 98-315 31-231 (258)
175 cd04722 TIM_phosphate_binding 94.6 2.1 4.6E-05 38.6 15.3 171 101-310 17-199 (200)
176 PF04131 NanE: Putative N-acet 94.5 0.51 1.1E-05 46.2 11.6 142 140-317 22-180 (192)
177 cd04733 OYE_like_2_FMN Old yel 94.5 2 4.3E-05 44.7 16.7 88 100-188 153-259 (338)
178 TIGR01520 FruBisAldo_II_A fruc 94.5 8.1 0.00018 41.3 22.6 233 80-327 18-304 (357)
179 cd04729 NanE N-acetylmannosami 94.5 1 2.2E-05 43.6 13.8 144 141-316 51-212 (219)
180 TIGR01163 rpe ribulose-phospha 94.5 1.4 3E-05 41.7 14.4 170 101-315 16-198 (210)
181 TIGR03151 enACPred_II putative 94.5 3.2 7E-05 42.9 18.1 183 80-317 3-197 (307)
182 TIGR00693 thiE thiamine-phosph 94.5 1.7 3.7E-05 40.9 14.9 132 135-315 42-185 (196)
183 PRK12999 pyruvate carboxylase; 94.4 1.5 3.3E-05 53.0 17.8 238 102-367 561-820 (1146)
184 cd00959 DeoC 2-deoxyribose-5-p 94.4 1.5 3.3E-05 42.3 14.8 139 153-307 57-200 (203)
185 cd02803 OYE_like_FMN_family Ol 94.4 2 4.3E-05 43.9 16.3 148 100-260 145-311 (327)
186 cd06556 ICL_KPHMT Members of t 94.4 0.16 3.5E-06 51.0 8.2 87 171-262 25-111 (240)
187 cd03315 MLE_like Muconate lact 94.3 2.5 5.5E-05 42.0 16.5 128 160-314 82-214 (265)
188 cd02809 alpha_hydroxyacid_oxid 94.3 0.28 6E-06 50.1 9.7 91 79-184 162-255 (299)
189 cd02932 OYE_YqiM_FMN Old yello 94.2 1.5 3.2E-05 45.5 15.1 86 100-186 158-262 (336)
190 TIGR01108 oadA oxaloacetate de 94.1 2.8 6.2E-05 47.2 17.9 234 100-363 25-274 (582)
191 cd02933 OYE_like_FMN Old yello 93.9 1.4 3.1E-05 46.1 14.4 138 166-314 153-318 (338)
192 PRK11572 copper homeostasis pr 93.9 8.3 0.00018 39.3 19.2 177 94-308 6-196 (248)
193 cd04723 HisA_HisF Phosphoribos 93.9 2.8 6.1E-05 41.4 15.7 171 98-315 36-223 (233)
194 TIGR01740 pyrF orotidine 5'-ph 93.9 2.3 4.9E-05 41.4 14.8 145 141-315 41-201 (213)
195 cd04739 DHOD_like Dihydroorota 93.8 1.6 3.4E-05 45.4 14.3 155 100-275 116-284 (325)
196 TIGR02311 HpaI 2,4-dihydroxyhe 93.7 6.2 0.00014 39.6 18.0 87 80-184 2-90 (249)
197 PF00682 HMGL-like: HMGL-like 93.7 0.9 1.9E-05 44.2 11.7 152 102-274 20-174 (237)
198 PF05690 ThiG: Thiazole biosyn 93.7 2.4 5.1E-05 43.1 14.7 127 162-314 73-208 (247)
199 KOG2335 tRNA-dihydrouridine sy 93.7 1.3 2.9E-05 47.0 13.6 150 149-312 72-235 (358)
200 PF04131 NanE: Putative N-acet 93.7 0.68 1.5E-05 45.4 10.6 92 76-184 80-172 (192)
201 COG2022 ThiG Uncharacterized e 93.6 0.26 5.7E-06 49.7 7.8 171 19-219 60-235 (262)
202 TIGR01302 IMP_dehydrog inosine 93.6 0.45 9.8E-06 51.6 10.4 125 167-310 163-293 (450)
203 cd00381 IMPDH IMPDH: The catal 93.6 4.9 0.00011 41.9 17.5 171 93-313 42-229 (325)
204 PRK00208 thiG thiazole synthas 93.5 3 6.6E-05 42.5 15.3 129 160-315 71-209 (250)
205 cd03316 MR_like Mandelate race 93.5 1.5 3.3E-05 45.2 13.7 114 150-281 126-244 (357)
206 TIGR00259 thylakoid_BtpA membr 93.5 1.2 2.7E-05 45.3 12.6 157 101-281 33-204 (257)
207 cd04735 OYE_like_4_FMN Old yel 93.5 2.4 5.3E-05 44.4 15.2 155 167-332 146-330 (353)
208 cd00381 IMPDH IMPDH: The catal 93.5 0.5 1.1E-05 49.2 10.0 99 79-184 124-225 (325)
209 PRK06512 thiamine-phosphate py 93.4 3.3 7.1E-05 41.0 15.2 131 136-315 57-197 (221)
210 PLN02495 oxidoreductase, actin 93.4 4.9 0.00011 43.2 17.5 120 125-259 84-213 (385)
211 PRK13125 trpA tryptophan synth 93.4 4.3 9.3E-05 40.4 16.1 143 140-315 64-219 (244)
212 PRK14017 galactonate dehydrata 93.4 1.9 4E-05 45.5 14.2 133 160-312 121-260 (382)
213 cd04724 Tryptophan_synthase_al 93.3 7.2 0.00016 38.8 17.6 175 102-317 20-222 (242)
214 cd02911 arch_FMN Archeal FMN-b 93.3 1.2 2.7E-05 44.2 12.1 97 134-260 124-220 (233)
215 cd04741 DHOD_1A_like Dihydroor 93.3 1.2 2.7E-05 45.5 12.3 149 109-274 119-289 (294)
216 PRK13523 NADPH dehydrogenase N 93.2 4.6 0.0001 42.4 16.8 89 167-261 144-248 (337)
217 PRK11858 aksA trans-homoaconit 93.2 8.4 0.00018 41.0 18.9 157 78-257 55-217 (378)
218 PRK07565 dihydroorotate dehydr 93.2 2.8 6E-05 43.5 15.1 81 100-187 118-199 (334)
219 PRK05286 dihydroorotate dehydr 93.2 0.93 2E-05 47.4 11.6 141 101-259 159-317 (344)
220 PF03437 BtpA: BtpA family; I 93.2 1.1 2.3E-05 45.6 11.7 160 101-282 34-205 (254)
221 PRK10415 tRNA-dihydrouridine s 93.2 2.5 5.5E-05 43.9 14.7 152 101-273 82-239 (321)
222 PLN02746 hydroxymethylglutaryl 93.2 6.7 0.00015 41.6 17.9 138 96-257 121-270 (347)
223 TIGR01304 IMP_DH_rel_2 IMP deh 93.1 2.6 5.6E-05 45.1 14.8 135 100-261 146-285 (369)
224 PRK14040 oxaloacetate decarbox 93.1 7.3 0.00016 44.1 19.1 234 101-365 32-282 (593)
225 PRK05848 nicotinate-nucleotide 93.1 2 4.4E-05 44.0 13.6 147 77-263 106-260 (273)
226 COG0826 Collagenase and relate 93.1 1.8 3.9E-05 45.8 13.5 141 169-323 17-157 (347)
227 PRK11572 copper homeostasis pr 93.1 1.4 3E-05 44.8 12.1 128 171-312 14-150 (248)
228 PRK05692 hydroxymethylglutaryl 93.0 4.3 9.3E-05 41.7 15.8 204 102-330 32-259 (287)
229 cd03321 mandelate_racemase Man 93.0 2.6 5.6E-05 44.0 14.4 134 160-321 138-278 (355)
230 PF03932 CutC: CutC family; I 92.9 0.42 9.1E-06 47.0 8.0 128 170-311 12-148 (201)
231 PRK08195 4-hyroxy-2-oxovalerat 92.9 3.7 7.9E-05 43.1 15.5 146 102-275 31-182 (337)
232 cd07937 DRE_TIM_PC_TC_5S Pyruv 92.9 4.3 9.2E-05 41.2 15.5 207 101-330 26-246 (275)
233 PRK08649 inosine 5-monophospha 92.9 1.8 3.8E-05 46.2 13.2 139 99-262 144-287 (368)
234 PRK13523 NADPH dehydrogenase N 92.8 4.4 9.6E-05 42.5 15.9 156 100-275 146-322 (337)
235 PLN02274 inosine-5'-monophosph 92.8 0.54 1.2E-05 52.0 9.5 100 79-185 278-380 (505)
236 TIGR01305 GMP_reduct_1 guanosi 92.8 0.66 1.4E-05 49.1 9.7 91 88-185 149-241 (343)
237 TIGR02151 IPP_isom_2 isopenten 92.8 3.8 8.2E-05 42.8 15.3 78 101-186 133-211 (333)
238 PRK07695 transcriptional regul 92.8 7.1 0.00015 37.3 16.1 132 133-315 38-182 (201)
239 COG0434 SgcQ Predicted TIM-bar 92.8 2.1 4.6E-05 43.5 12.7 154 101-282 39-210 (263)
240 PRK02615 thiamine-phosphate py 92.8 3.5 7.5E-05 43.8 15.1 132 134-315 185-327 (347)
241 cd04824 eu_ALAD_PBGS_cysteine_ 92.7 3 6.6E-05 43.8 14.2 169 92-282 41-268 (320)
242 PF01729 QRPTase_C: Quinolinat 92.7 1.1 2.4E-05 42.7 10.3 146 77-262 4-157 (169)
243 PRK07807 inosine 5-monophospha 92.6 0.58 1.3E-05 51.4 9.5 90 89-185 268-359 (479)
244 PRK06852 aldolase; Validated 92.6 7.8 0.00017 40.5 17.1 204 93-331 55-289 (304)
245 PRK07028 bifunctional hexulose 92.4 13 0.00027 40.1 19.1 143 138-316 44-196 (430)
246 COG0352 ThiE Thiamine monophos 92.4 6.4 0.00014 39.0 15.6 146 150-315 7-191 (211)
247 COG0157 NadC Nicotinate-nucleo 92.4 0.9 2E-05 46.8 9.8 67 243-312 198-264 (280)
248 COG0413 PanB Ketopantoate hydr 92.4 0.89 1.9E-05 46.5 9.7 101 169-274 26-129 (268)
249 PF01207 Dus: Dihydrouridine s 92.4 0.93 2E-05 46.8 10.1 148 91-259 57-212 (309)
250 PRK10550 tRNA-dihydrouridine s 92.3 3.4 7.4E-05 42.9 14.2 151 101-271 80-237 (312)
251 cd07945 DRE_TIM_CMS Leptospira 92.2 5.1 0.00011 41.0 15.1 133 101-257 79-220 (280)
252 TIGR01303 IMP_DH_rel_1 IMP deh 92.2 0.81 1.8E-05 50.3 9.9 100 80-186 256-358 (475)
253 COG2513 PrpB PEP phosphonomuta 92.2 3.2 7E-05 43.1 13.5 136 100-263 97-237 (289)
254 PF01729 QRPTase_C: Quinolinat 92.1 0.51 1.1E-05 45.0 7.3 90 211-314 66-159 (169)
255 PRK08255 salicylyl-CoA 5-hydro 92.1 2.6 5.7E-05 48.6 14.3 90 167-260 553-658 (765)
256 PRK09490 metH B12-dependent me 92.0 1.4 3E-05 53.7 12.3 128 134-275 253-423 (1229)
257 cd04729 NanE N-acetylmannosami 92.0 1.4 3.1E-05 42.6 10.4 92 81-185 115-206 (219)
258 TIGR01769 GGGP geranylgeranylg 92.0 3.1 6.7E-05 41.0 12.7 172 102-310 17-205 (205)
259 TIGR00035 asp_race aspartate r 91.9 1.5 3.3E-05 43.0 10.6 101 201-310 12-123 (229)
260 TIGR02127 pyrF_sub2 orotidine 91.9 4.7 0.0001 41.1 14.3 109 149-278 85-211 (261)
261 TIGR03151 enACPred_II putative 91.9 0.96 2.1E-05 46.8 9.5 92 79-186 100-191 (307)
262 cd04724 Tryptophan_synthase_al 91.9 2.9 6.2E-05 41.7 12.6 105 159-273 8-123 (242)
263 cd02811 IDI-2_FMN Isopentenyl- 91.9 4.1 8.8E-05 42.5 14.1 77 102-186 133-210 (326)
264 cd07948 DRE_TIM_HCS Saccharomy 91.8 9.5 0.00021 38.7 16.4 143 91-257 66-213 (262)
265 TIGR02660 nifV_homocitr homoci 91.8 14 0.0003 39.1 18.2 154 78-257 52-214 (365)
266 cd03325 D-galactonate_dehydrat 91.8 3.8 8.2E-05 42.8 13.9 116 151-281 113-231 (352)
267 cd04737 LOX_like_FMN L-Lactate 91.8 0.95 2.1E-05 47.9 9.5 84 88-186 221-306 (351)
268 PRK00125 pyrF orotidine 5'-pho 91.8 18 0.00038 37.4 18.9 168 104-304 46-235 (278)
269 PF13714 PEP_mutase: Phosphoen 91.7 1.6 3.5E-05 43.7 10.6 126 100-262 89-221 (238)
270 PRK08227 autoinducer 2 aldolas 91.6 4.4 9.5E-05 41.5 13.7 163 150-331 74-248 (264)
271 PRK08385 nicotinate-nucleotide 91.6 1.4 3E-05 45.4 10.2 90 211-312 169-261 (278)
272 PRK01130 N-acetylmannosamine-6 91.6 1.5 3.2E-05 42.5 10.0 94 79-185 108-202 (221)
273 PRK13587 1-(5-phosphoribosyl)- 91.5 8.1 0.00017 38.5 15.3 176 98-315 32-226 (234)
274 cd04736 MDH_FMN Mandelate dehy 91.5 0.87 1.9E-05 48.5 8.9 91 79-186 229-319 (361)
275 cd07944 DRE_TIM_HOA_like 4-hyd 91.4 13 0.00029 37.6 17.0 129 97-257 83-212 (266)
276 PF02581 TMP-TENI: Thiamine mo 91.4 6.7 0.00015 37.0 13.9 121 166-309 13-176 (180)
277 cd03327 MR_like_2 Mandelate ra 91.4 2.6 5.6E-05 43.8 12.1 116 150-281 108-226 (341)
278 PRK11613 folP dihydropteroate 91.4 10 0.00022 39.2 16.2 103 161-281 34-137 (282)
279 TIGR03128 RuMP_HxlA 3-hexulose 91.4 5.2 0.00011 38.0 13.3 139 141-316 42-192 (206)
280 TIGR02708 L_lactate_ox L-lacta 91.3 2.9 6.3E-05 44.7 12.6 95 141-261 219-313 (367)
281 PRK06843 inosine 5-monophospha 91.3 1.4 3E-05 47.6 10.3 99 79-184 183-284 (404)
282 PRK06096 molybdenum transport 91.3 2 4.4E-05 44.3 11.1 125 167-311 136-265 (284)
283 cd04747 OYE_like_5_FMN Old yel 91.3 4.3 9.2E-05 43.2 13.8 90 166-259 145-254 (361)
284 PTZ00314 inosine-5'-monophosph 91.1 1.2 2.7E-05 49.0 9.9 96 79-186 271-374 (495)
285 cd04738 DHOD_2_like Dihydrooro 91.0 4.8 0.0001 41.8 13.6 155 101-273 150-325 (327)
286 TIGR03239 GarL 2-dehydro-3-deo 91.0 1.4 3.1E-05 44.3 9.5 84 169-276 24-107 (249)
287 cd03332 LMO_FMN L-Lactate 2-mo 91.0 1.4 3E-05 47.3 9.9 92 80-184 244-336 (383)
288 PRK10128 2-keto-3-deoxy-L-rham 90.9 2.1 4.6E-05 43.7 10.7 84 169-276 30-113 (267)
289 PLN02746 hydroxymethylglutaryl 90.9 3 6.5E-05 44.2 12.1 155 102-275 74-235 (347)
290 PRK06559 nicotinate-nucleotide 90.7 1.3 2.8E-05 45.9 9.0 75 224-312 197-271 (290)
291 PRK05437 isopentenyl pyrophosp 90.7 7.6 0.00016 41.0 14.9 83 96-186 134-218 (352)
292 cd02930 DCR_FMN 2,4-dienoyl-Co 90.7 8.3 0.00018 40.4 15.1 86 100-185 141-244 (353)
293 PF00290 Trp_syntA: Tryptophan 90.7 2.8 6E-05 42.8 11.2 197 81-319 1-235 (259)
294 TIGR01302 IMP_dehydrog inosine 90.6 1.7 3.6E-05 47.2 10.3 100 80-186 255-357 (450)
295 PLN02334 ribulose-phosphate 3- 90.6 3.7 7.9E-05 40.3 11.8 162 103-316 27-208 (229)
296 PRK10605 N-ethylmaleimide redu 90.6 13 0.00027 39.5 16.5 151 99-274 162-337 (362)
297 PRK09485 mmuM homocysteine met 90.5 2.2 4.7E-05 44.0 10.5 43 244-286 144-190 (304)
298 PRK10558 alpha-dehydro-beta-de 90.5 2.2 4.8E-05 43.2 10.3 84 169-276 31-114 (256)
299 COG2022 ThiG Uncharacterized e 90.5 15 0.00032 37.6 15.8 129 160-314 78-215 (262)
300 cd03323 D-glucarate_dehydratas 90.5 6.2 0.00013 42.1 14.2 97 163-282 168-266 (395)
301 TIGR02708 L_lactate_ox L-lacta 90.5 1.9 4E-05 46.1 10.2 92 80-186 219-313 (367)
302 PRK06543 nicotinate-nucleotide 90.4 1.4 3.1E-05 45.4 9.0 65 243-312 203-267 (281)
303 cd07948 DRE_TIM_HCS Saccharomy 90.4 5.7 0.00012 40.3 13.2 148 103-275 29-179 (262)
304 cd04725 OMP_decarboxylase_like 90.4 14 0.0003 36.1 15.6 146 141-315 41-205 (216)
305 cd03329 MR_like_4 Mandelate ra 90.4 12 0.00026 39.2 16.1 100 161-280 141-243 (368)
306 PRK11840 bifunctional sulfur c 90.4 4.6 0.0001 42.6 12.8 173 19-219 127-302 (326)
307 PRK06978 nicotinate-nucleotide 90.4 1.4 3E-05 45.8 8.9 65 243-312 215-279 (294)
308 TIGR00640 acid_CoA_mut_C methy 90.3 1.2 2.6E-05 40.8 7.5 82 239-325 42-127 (132)
309 cd07943 DRE_TIM_HOA 4-hydroxy- 90.3 15 0.00033 36.7 16.1 146 102-275 28-179 (263)
310 TIGR01334 modD putative molybd 90.1 1.4 3E-05 45.3 8.6 67 243-312 198-265 (277)
311 PRK05848 nicotinate-nucleotide 90.1 1.9 4.2E-05 44.2 9.6 77 225-313 183-260 (273)
312 PRK11858 aksA trans-homoaconit 90.0 5.7 0.00012 42.2 13.4 148 102-275 32-183 (378)
313 TIGR03247 glucar-dehydr glucar 90.0 3.1 6.6E-05 45.3 11.6 97 163-282 180-284 (441)
314 TIGR01306 GMP_reduct_2 guanosi 90.0 1.6 3.4E-05 45.9 9.0 85 88-185 136-227 (321)
315 PRK09389 (R)-citramalate synth 89.9 7.4 0.00016 43.0 14.6 148 102-275 30-181 (488)
316 COG2876 AroA 3-deoxy-D-arabino 89.9 1.8 3.9E-05 44.5 9.1 133 79-213 99-276 (286)
317 PRK06106 nicotinate-nucleotide 89.9 1.6 3.5E-05 45.0 8.9 64 244-312 205-268 (281)
318 TIGR01496 DHPS dihydropteroate 89.8 17 0.00036 36.8 16.0 102 163-282 21-123 (257)
319 PRK08195 4-hyroxy-2-oxovalerat 89.8 14 0.0003 38.9 15.9 133 93-257 85-218 (337)
320 TIGR02311 HpaI 2,4-dihydroxyhe 89.7 3.1 6.7E-05 41.8 10.7 84 169-276 24-107 (249)
321 PF00478 IMPDH: IMP dehydrogen 89.7 2.1 4.5E-05 45.6 9.8 86 89-186 150-241 (352)
322 TIGR03217 4OH_2_O_val_ald 4-hy 89.7 15 0.00032 38.7 16.0 146 102-275 30-181 (333)
323 cd00564 TMP_TenI Thiamine mono 89.6 3.6 7.8E-05 37.8 10.3 96 78-188 85-181 (196)
324 PRK07107 inosine 5-monophospha 89.6 1.6 3.5E-05 48.3 9.1 90 91-186 287-382 (502)
325 cd07941 DRE_TIM_LeuA3 Desulfob 89.6 12 0.00026 37.9 14.8 103 169-275 82-189 (273)
326 PRK00507 deoxyribose-phosphate 89.4 16 0.00034 36.4 15.2 144 150-309 59-207 (221)
327 PF03328 HpcH_HpaI: HpcH/HpaI 89.4 3.8 8.2E-05 39.8 10.7 133 169-316 12-156 (221)
328 TIGR01303 IMP_DH_rel_1 IMP deh 89.4 7 0.00015 43.1 13.9 65 103-187 231-296 (475)
329 TIGR02660 nifV_homocitr homoci 89.4 6.4 0.00014 41.5 13.2 148 102-275 29-180 (365)
330 PRK02506 dihydroorotate dehydr 89.4 5.6 0.00012 41.2 12.5 159 100-275 109-288 (310)
331 TIGR02082 metH 5-methyltetrahy 89.4 3.8 8.2E-05 49.9 12.7 128 134-275 237-407 (1178)
332 cd02933 OYE_like_FMN Old yello 89.4 17 0.00036 38.2 16.1 151 100-273 156-329 (338)
333 PRK07896 nicotinate-nucleotide 89.3 2 4.4E-05 44.5 9.1 67 244-313 210-277 (289)
334 cd03328 MR_like_3 Mandelate ra 89.3 5.1 0.00011 41.9 12.3 109 150-281 125-239 (352)
335 PLN02489 homocysteine S-methyl 89.3 4.2 9.1E-05 42.7 11.6 45 242-286 169-217 (335)
336 cd03319 L-Ala-DL-Glu_epimerase 89.3 14 0.0003 37.7 15.2 122 162-313 133-261 (316)
337 cd04726 KGPDC_HPS 3-Keto-L-gul 89.2 13 0.00028 35.1 13.9 140 139-315 41-191 (202)
338 TIGR02090 LEU1_arch isopropylm 89.2 7 0.00015 41.3 13.3 148 102-275 28-179 (363)
339 COG0821 gcpE 1-hydroxy-2-methy 89.2 9.7 0.00021 40.6 13.9 146 104-289 44-206 (361)
340 TIGR03217 4OH_2_O_val_ald 4-hy 89.2 17 0.00037 38.2 16.0 134 92-257 83-217 (333)
341 TIGR00742 yjbN tRNA dihydrouri 89.2 15 0.00033 38.3 15.5 159 101-273 72-238 (318)
342 PRK15452 putative protease; Pr 89.1 7.7 0.00017 42.4 13.8 138 170-321 15-152 (443)
343 PRK08645 bifunctional homocyst 89.0 29 0.00064 39.3 18.8 176 107-307 54-267 (612)
344 cd07944 DRE_TIM_HOA_like 4-hyd 88.9 14 0.00031 37.4 14.7 148 102-275 26-176 (266)
345 cd03326 MR_like_1 Mandelate ra 88.9 8.3 0.00018 41.2 13.6 98 163-281 160-260 (385)
346 TIGR03849 arch_ComA phosphosul 88.8 2.9 6.4E-05 42.2 9.6 119 138-276 42-184 (237)
347 PLN02716 nicotinate-nucleotide 88.7 2.8 6.1E-05 43.9 9.7 65 244-312 214-292 (308)
348 PRK05567 inosine 5'-monophosph 88.7 2.3 5.1E-05 46.5 9.6 90 89-186 270-361 (486)
349 COG3010 NanE Putative N-acetyl 88.7 7.7 0.00017 38.9 12.1 110 79-215 117-226 (229)
350 PRK08649 inosine 5-monophospha 88.6 2.6 5.7E-05 44.9 9.7 99 78-184 176-284 (368)
351 PF00478 IMPDH: IMP dehydrogen 88.5 3.9 8.5E-05 43.5 10.8 132 150-312 37-179 (352)
352 PRK05096 guanosine 5'-monophos 88.5 2.5 5.4E-05 44.9 9.2 91 89-186 152-243 (346)
353 COG1794 RacX Aspartate racemas 88.4 2.1 4.5E-05 43.1 8.2 107 194-309 5-122 (230)
354 PLN03228 methylthioalkylmalate 88.4 7.9 0.00017 43.1 13.5 151 102-274 112-276 (503)
355 TIGR00612 ispG_gcpE 1-hydroxy- 88.4 11 0.00024 40.1 13.8 146 104-289 42-204 (346)
356 PLN02535 glycolate oxidase 88.3 2.3 4.9E-05 45.4 9.0 85 88-187 223-309 (364)
357 PRK02714 O-succinylbenzoate sy 88.2 8.1 0.00018 40.0 12.7 110 150-282 109-222 (320)
358 PRK05581 ribulose-phosphate 3- 88.2 11 0.00023 36.1 12.8 28 288-316 177-204 (220)
359 cd03322 rpsA The starvation se 88.1 10 0.00022 39.8 13.5 90 163-281 126-218 (361)
360 PRK09016 quinolinate phosphori 88.1 2.3 5E-05 44.3 8.6 64 243-311 218-281 (296)
361 PRK00366 ispG 4-hydroxy-3-meth 88.0 14 0.0003 39.7 14.3 147 104-289 50-213 (360)
362 TIGR01334 modD putative molybd 88.0 10 0.00022 39.1 13.1 146 78-263 109-266 (277)
363 cd02922 FCB2_FMN Flavocytochro 87.9 4.6 9.9E-05 42.7 10.8 95 79-185 203-300 (344)
364 cd00331 IGPS Indole-3-glycerol 87.9 1.5 3.2E-05 42.4 6.7 99 224-329 10-118 (217)
365 cd04734 OYE_like_3_FMN Old yel 87.9 17 0.00037 38.1 15.0 158 100-273 145-330 (343)
366 cd03324 rTSbeta_L-fuconate_deh 87.8 6.2 0.00013 42.6 12.0 98 163-281 196-298 (415)
367 PRK07695 transcriptional regul 87.8 3.8 8.1E-05 39.2 9.4 95 78-188 86-180 (201)
368 COG0284 PyrF Orotidine-5'-phos 87.7 32 0.00069 34.8 16.2 183 90-316 14-220 (240)
369 COG1830 FbaB DhnA-type fructos 87.7 9.9 0.00022 39.1 12.7 179 78-291 10-213 (265)
370 TIGR02090 LEU1_arch isopropylm 87.7 29 0.00064 36.7 16.7 154 78-257 51-213 (363)
371 PF00490 ALAD: Delta-aminolevu 87.6 7.6 0.00016 41.0 12.0 167 92-282 47-272 (324)
372 PRK11197 lldD L-lactate dehydr 87.6 3.6 7.9E-05 44.2 10.0 84 88-184 245-328 (381)
373 PLN02274 inosine-5'-monophosph 87.4 0.88 1.9E-05 50.3 5.4 65 240-310 247-317 (505)
374 PF02219 MTHFR: Methylenetetra 87.4 29 0.00063 35.3 16.0 202 80-302 1-219 (287)
375 PRK03512 thiamine-phosphate py 87.3 28 0.0006 34.2 15.3 149 135-332 48-210 (211)
376 PRK10605 N-ethylmaleimide redu 87.3 18 0.00039 38.4 14.8 135 166-314 160-325 (362)
377 PRK05742 nicotinate-nucleotide 87.2 3 6.5E-05 42.9 8.8 75 223-312 188-263 (277)
378 PRK05105 O-succinylbenzoate sy 87.2 5.9 0.00013 41.0 11.1 100 160-281 112-213 (322)
379 cd04730 NPD_like 2-Nitropropan 87.1 5 0.00011 38.8 9.9 95 81-188 94-188 (236)
380 PRK05458 guanosine 5'-monophos 87.1 0.87 1.9E-05 47.8 4.9 67 240-312 96-170 (326)
381 PRK15458 tagatose 6-phosphate 87.1 52 0.0011 36.1 24.6 272 79-366 5-340 (426)
382 PRK13753 dihydropteroate synth 87.0 14 0.0003 38.3 13.4 104 161-283 21-125 (279)
383 PF02679 ComA: (2R)-phospho-3- 87.0 1.7 3.7E-05 44.0 6.8 117 137-276 54-196 (244)
384 PRK05458 guanosine 5'-monophos 86.9 3.5 7.6E-05 43.4 9.3 85 89-186 140-231 (326)
385 PRK15052 D-tagatose-1,6-bispho 86.9 53 0.0011 36.0 22.2 204 105-322 34-293 (421)
386 cd03332 LMO_FMN L-Lactate 2-mo 86.9 41 0.00088 36.4 17.3 101 244-358 265-379 (383)
387 cd04732 HisA HisA. Phosphorib 86.8 7 0.00015 37.8 10.7 122 166-310 30-166 (234)
388 KOG1260 Isocitrate lyase [Ener 86.8 0.72 1.6E-05 50.2 4.1 90 239-331 336-440 (492)
389 PLN02495 oxidoreductase, actin 86.7 17 0.00038 39.1 14.5 216 93-333 120-365 (385)
390 PTZ00314 inosine-5'-monophosph 86.6 9.1 0.0002 42.4 12.6 116 166-312 241-375 (495)
391 PRK00915 2-isopropylmalate syn 86.6 12 0.00026 41.5 13.6 151 102-274 32-186 (513)
392 CHL00200 trpA tryptophan synth 86.6 14 0.00031 37.6 13.2 110 153-272 17-137 (263)
393 PRK11815 tRNA-dihydrouridine s 86.5 9.8 0.00021 39.8 12.3 88 100-187 81-173 (333)
394 cd02922 FCB2_FMN Flavocytochro 86.5 17 0.00038 38.4 14.2 101 243-357 224-341 (344)
395 cd00452 KDPG_aldolase KDPG and 86.0 6.3 0.00014 37.5 9.8 67 243-314 107-175 (190)
396 PRK12858 tagatose 1,6-diphosph 85.9 23 0.0005 37.5 14.7 150 95-259 105-275 (340)
397 PRK13111 trpA tryptophan synth 85.5 18 0.00038 36.8 13.2 112 153-273 14-136 (258)
398 COG0113 HemB Delta-aminolevuli 85.4 15 0.00033 38.7 12.7 168 91-282 50-275 (330)
399 TIGR03128 RuMP_HxlA 3-hexulose 85.4 31 0.00067 32.8 14.2 121 98-259 63-185 (206)
400 PRK00043 thiE thiamine-phospha 85.4 8.6 0.00019 36.4 10.3 96 78-188 94-191 (212)
401 COG0269 SgbH 3-hexulose-6-phos 85.4 44 0.00094 33.6 15.6 159 139-330 44-214 (217)
402 CHL00162 thiG thiamin biosynth 85.3 49 0.0011 34.2 16.4 125 163-313 82-221 (267)
403 PLN02321 2-isopropylmalate syn 85.1 8.1 0.00017 44.2 11.6 110 132-257 202-316 (632)
404 PLN02979 glycolate oxidase 85.1 4.9 0.00011 43.1 9.3 85 88-185 223-307 (366)
405 PRK09283 delta-aminolevulinic 85.1 7.8 0.00017 40.9 10.6 167 92-283 49-271 (323)
406 PRK09140 2-dehydro-3-deoxy-6-p 85.0 14 0.0003 36.2 11.8 136 163-315 20-184 (206)
407 PRK07534 methionine synthase I 85.0 55 0.0012 34.5 18.2 142 107-268 56-219 (336)
408 PRK05567 inosine 5'-monophosph 85.0 6.3 0.00014 43.2 10.4 126 167-310 167-297 (486)
409 PF00977 His_biosynth: Histidi 85.0 3.4 7.4E-05 40.7 7.6 175 97-314 29-224 (229)
410 cd02929 TMADH_HD_FMN Trimethyl 85.0 19 0.00041 38.2 13.6 151 167-333 152-337 (370)
411 cd00429 RPE Ribulose-5-phospha 84.9 34 0.00075 32.1 15.4 167 102-315 18-199 (211)
412 cd07940 DRE_TIM_IPMS 2-isoprop 84.9 16 0.00036 36.6 12.6 147 103-275 27-181 (268)
413 cd08209 RLP_DK-MTP-1-P-enolase 84.8 26 0.00056 38.0 14.7 119 142-274 115-239 (391)
414 PRK08999 hypothetical protein; 84.8 14 0.00031 37.5 12.2 129 128-307 166-305 (312)
415 cd08213 RuBisCO_large_III Ribu 84.8 27 0.00059 38.1 14.9 118 142-273 122-245 (412)
416 COG3142 CutC Uncharacterized p 84.8 13 0.00029 37.7 11.6 169 172-355 15-198 (241)
417 COG4948 L-alanine-DL-glutamate 84.8 16 0.00036 38.2 13.0 120 163-307 143-266 (372)
418 PRK00230 orotidine 5'-phosphat 84.8 43 0.00094 33.1 15.8 146 142-316 46-213 (230)
419 PRK06843 inosine 5-monophospha 84.7 3.4 7.5E-05 44.7 8.1 66 240-311 152-223 (404)
420 PF03060 NMO: Nitronate monoox 84.6 4.5 9.6E-05 42.1 8.7 93 78-184 126-218 (330)
421 PRK00915 2-isopropylmalate syn 84.6 14 0.00031 41.0 13.0 109 132-257 112-225 (513)
422 cd03318 MLE Muconate Lactonizi 84.6 14 0.0003 38.6 12.4 99 162-281 141-243 (365)
423 TIGR01036 pyrD_sub2 dihydrooro 84.6 52 0.0011 34.6 16.6 159 90-260 58-244 (335)
424 cd00384 ALAD_PBGS Porphobilino 84.6 8.5 0.00018 40.5 10.5 165 92-282 41-262 (314)
425 cd00739 DHPS DHPS subgroup of 84.4 46 0.001 33.7 15.6 103 163-282 22-125 (257)
426 COG0167 PyrD Dihydroorotate de 84.4 23 0.00051 37.2 13.7 138 103-259 116-269 (310)
427 cd04722 TIM_phosphate_binding 84.3 24 0.00051 31.7 12.3 127 165-312 12-145 (200)
428 PF01070 FMN_dh: FMN-dependent 84.2 6.9 0.00015 41.5 9.9 87 87-186 224-310 (356)
429 COG0800 Eda 2-keto-3-deoxy-6-p 84.1 9.6 0.00021 38.0 10.2 120 151-314 16-138 (211)
430 PRK06015 keto-hydroxyglutarate 84.1 17 0.00036 35.9 11.9 124 163-326 14-143 (201)
431 cd08207 RLP_NonPhot Ribulose b 84.1 29 0.00062 37.8 14.6 124 142-280 134-263 (406)
432 TIGR01927 menC_gamma/gm+ o-suc 84.0 12 0.00025 38.6 11.3 100 162-282 110-211 (307)
433 cd02931 ER_like_FMN Enoate red 83.9 49 0.0011 35.3 16.3 157 100-273 154-350 (382)
434 PRK05718 keto-hydroxyglutarate 83.9 40 0.00087 33.4 14.5 130 143-314 10-140 (212)
435 COG5016 Pyruvate/oxaloacetate 83.8 14 0.00031 40.3 12.0 231 103-362 35-280 (472)
436 PLN02493 probable peroxisomal 83.8 5.1 0.00011 42.9 8.8 84 88-184 224-307 (367)
437 KOG1606 Stationary phase-induc 83.7 4.4 9.6E-05 40.8 7.7 198 79-315 14-243 (296)
438 PLN03228 methylthioalkylmalate 83.7 15 0.00033 40.9 12.6 110 133-258 202-316 (503)
439 TIGR01182 eda Entner-Doudoroff 83.7 29 0.00062 34.3 13.3 122 163-324 18-145 (204)
440 PF02581 TMP-TENI: Thiamine mo 83.7 6 0.00013 37.3 8.4 93 77-184 84-176 (180)
441 PRK01033 imidazole glycerol ph 83.6 22 0.00049 35.7 12.9 148 78-260 63-226 (258)
442 PRK07428 nicotinate-nucleotide 83.5 4.8 0.00011 41.6 8.3 64 244-313 207-274 (288)
443 PF01136 Peptidase_U32: Peptid 83.5 18 0.00039 35.0 11.9 81 166-276 3-83 (233)
444 TIGR00973 leuA_bact 2-isopropy 83.4 18 0.00039 40.0 13.1 110 132-257 109-222 (494)
445 PRK07107 inosine 5-monophospha 83.4 7.9 0.00017 43.0 10.4 125 167-312 182-314 (502)
446 PLN02898 HMP-P kinase/thiamin- 83.4 40 0.00086 37.0 15.7 142 152-314 294-479 (502)
447 TIGR01305 GMP_reduct_1 guanosi 83.0 52 0.0011 35.2 15.6 145 132-310 77-241 (343)
448 PRK02506 dihydroorotate dehydr 83.0 62 0.0013 33.5 16.2 78 133-217 74-155 (310)
449 PF00016 RuBisCO_large: Ribulo 82.9 23 0.0005 37.2 13.0 123 140-274 3-133 (309)
450 PRK07534 methionine synthase I 82.8 12 0.00025 39.5 10.9 120 163-286 43-179 (336)
451 cd08148 RuBisCO_large Ribulose 82.8 35 0.00075 36.7 14.5 119 142-274 118-242 (366)
452 cd02812 PcrB_like PcrB_like pr 82.7 43 0.00094 33.5 14.3 184 98-316 14-210 (219)
453 cd04735 OYE_like_4_FMN Old yel 82.7 35 0.00077 35.8 14.4 85 100-187 148-257 (353)
454 PRK08072 nicotinate-nucleotide 82.7 9 0.00019 39.5 9.8 64 244-312 199-262 (277)
455 PRK02615 thiamine-phosphate py 82.6 7.5 0.00016 41.3 9.5 97 78-189 230-326 (347)
456 COG0167 PyrD Dihydroorotate de 82.5 56 0.0012 34.4 15.6 156 89-260 13-193 (310)
457 cd04737 LOX_like_FMN L-Lactate 82.5 6.6 0.00014 41.7 9.0 101 244-358 233-347 (351)
458 cd00377 ICL_PEPM Members of th 82.5 9.1 0.0002 38.3 9.6 84 171-261 22-105 (243)
459 PRK04452 acetyl-CoA decarbonyl 82.5 37 0.0008 35.9 14.3 36 239-275 277-312 (319)
460 TIGR03569 NeuB_NnaB N-acetylne 82.4 58 0.0013 34.4 15.8 217 77-352 77-318 (329)
461 PRK07114 keto-hydroxyglutarate 82.3 47 0.001 33.2 14.4 131 144-315 11-145 (222)
462 TIGR00973 leuA_bact 2-isopropy 82.2 28 0.00061 38.5 14.0 150 102-274 29-183 (494)
463 TIGR01304 IMP_DH_rel_2 IMP deh 82.0 6.8 0.00015 42.0 8.9 97 80-184 179-283 (369)
464 PRK10200 putative racemase; Pr 82.0 17 0.00036 36.1 11.2 99 202-309 13-122 (230)
465 TIGR01235 pyruv_carbox pyruvat 81.9 50 0.0011 40.5 17.0 191 153-367 609-818 (1143)
466 PLN02826 dihydroorotate dehydr 81.9 24 0.00051 38.4 13.0 149 110-274 217-387 (409)
467 COG0159 TrpA Tryptophan syntha 81.7 68 0.0015 33.1 21.3 101 78-186 5-130 (265)
468 PRK13813 orotidine 5'-phosphat 81.7 51 0.0011 31.7 18.1 149 141-316 46-198 (215)
469 COG0159 TrpA Tryptophan syntha 81.7 16 0.00034 37.7 11.0 132 135-276 4-147 (265)
470 TIGR00078 nadC nicotinate-nucl 81.5 8.5 0.00018 39.2 9.1 78 218-310 172-250 (265)
471 COG0119 LeuA Isopropylmalate/h 81.5 15 0.00033 39.9 11.4 108 133-258 110-221 (409)
472 PRK13384 delta-aminolevulinic 81.4 12 0.00027 39.4 10.3 166 92-282 51-271 (322)
473 cd07938 DRE_TIM_HMGL 3-hydroxy 81.4 44 0.00095 34.1 14.1 153 102-274 26-186 (274)
474 COG2875 CobM Precorrin-4 methy 81.4 23 0.00049 36.2 11.7 116 203-332 60-182 (254)
475 PF00682 HMGL-like: HMGL-like 81.3 18 0.00039 35.1 11.0 154 80-257 48-210 (237)
476 TIGR02317 prpB methylisocitrat 81.1 5.4 0.00012 41.2 7.6 83 172-261 27-109 (285)
477 cd04823 ALAD_PBGS_aspartate_ri 81.1 14 0.00031 38.9 10.6 167 92-282 44-267 (320)
478 COG0107 HisF Imidazoleglycerol 81.1 34 0.00073 35.0 12.8 158 80-282 22-204 (256)
479 TIGR03326 rubisco_III ribulose 81.1 28 0.00061 37.9 13.2 118 142-273 135-258 (412)
480 PLN02321 2-isopropylmalate syn 81.0 25 0.00054 40.4 13.3 152 101-274 113-277 (632)
481 PF01487 DHquinase_I: Type I 3 80.9 57 0.0012 31.7 14.3 120 133-272 37-163 (224)
482 COG0434 SgcQ Predicted TIM-bar 80.9 2 4.3E-05 43.7 4.2 48 239-287 33-95 (263)
483 cd08212 RuBisCO_large_I Ribulo 80.8 35 0.00076 37.7 14.0 125 142-280 136-268 (450)
484 cd03174 DRE_TIM_metallolyase D 80.8 59 0.0013 31.8 14.8 156 78-257 54-219 (265)
485 PF02574 S-methyl_trans: Homoc 80.8 15 0.00032 37.5 10.6 164 163-328 39-238 (305)
486 PRK04208 rbcL ribulose bisopho 80.7 47 0.001 36.9 14.9 119 142-273 151-275 (468)
487 PLN02591 tryptophan synthase 80.7 23 0.00051 35.9 11.8 104 159-272 10-124 (250)
488 PRK06801 hypothetical protein; 80.6 3.9 8.5E-05 42.2 6.4 71 103-186 163-234 (286)
489 PF01180 DHO_dh: Dihydroorotat 80.6 45 0.00097 33.9 13.9 180 135-330 77-293 (295)
490 TIGR01949 AroFGH_arch predicte 80.6 25 0.00054 35.2 11.9 123 102-259 96-226 (258)
491 cd07938 DRE_TIM_HMGL 3-hydroxy 80.5 23 0.00049 36.1 11.7 136 99-257 76-222 (274)
492 cd08206 RuBisCO_large_I_II_III 80.4 47 0.001 36.3 14.6 120 142-274 123-248 (414)
493 COG1856 Uncharacterized homolo 80.3 20 0.00044 36.5 10.9 109 168-307 45-153 (275)
494 PRK15129 L-Ala-D/L-Glu epimera 80.3 43 0.00093 34.6 13.9 79 160-262 126-204 (321)
495 PRK11320 prpB 2-methylisocitra 80.2 6.3 0.00014 40.9 7.7 83 172-261 31-114 (292)
496 PRK07896 nicotinate-nucleotide 80.1 40 0.00086 35.1 13.4 146 78-263 125-277 (289)
497 cd07939 DRE_TIM_NifV Streptomy 80.1 68 0.0015 32.1 18.7 155 79-257 50-211 (259)
498 cd04726 KGPDC_HPS 3-Keto-L-gul 80.0 11 0.00023 35.6 8.7 78 93-187 110-188 (202)
499 PRK13585 1-(5-phosphoribosyl)- 79.9 10 0.00022 37.0 8.8 123 167-311 34-170 (241)
500 PRK09389 (R)-citramalate synth 79.9 24 0.00051 39.1 12.5 132 103-257 80-215 (488)
No 1
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=100.00 E-value=1.3e-72 Score=567.33 Aligned_cols=286 Identities=36% Similarity=0.557 Sum_probs=269.1
Q ss_pred CcHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceE
Q 010948 75 LSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (497)
Q Consensus 75 ~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVI 154 (497)
|.++++||+||++++++++||+||++|||++|++||+++|+||+++|++++|+||.+.+|++||++++++|++++++||+
T Consensus 3 ~~~~~~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPvi 82 (292)
T PRK11320 3 HSAGARFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLL 82 (292)
T ss_pred CCHHHHHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEE
Confidence 45678899999999999999999999999999999999999999998778999999999999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch
Q 010948 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (497)
Q Consensus 155 aD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~ 234 (497)
||+|+|||++.|++++|++|+++||+|||||||.+||+|||..|++++|.+|+++||+|+++|++ ++||+||||||++
T Consensus 83 aD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa~ 160 (292)
T PRK11320 83 VDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPDFVIMARTDAL 160 (292)
T ss_pred EECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCCeEEEEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999987 5899999999999
Q ss_pred hcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 010948 235 QALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (497)
Q Consensus 235 ~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll 314 (497)
...++||+|+|+++|++||||+||+|++.+.+++++++++++ +|+++||+++ +++|.++.+||++|||++|+||++++
T Consensus 161 ~~~g~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-~Pl~~n~~~~-~~~p~~s~~~L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 161 AVEGLDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVK-VPILANITEF-GATPLFTTEELASAGVAMVLYPLSAF 238 (292)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcC-CCEEEEeccC-CCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 888999999999999999999999999999999999999997 6988999986 67899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC-CC-CCCCCCCCHHHHHHhcCcccHH-HHHHhhccc
Q 010948 315 GVSVRAMQDALTAIKGG-RI-PSPGSMPSFQEIKETLGFNTYY-EEEKRYATS 364 (497)
Q Consensus 315 ~aa~~Am~~al~~i~~g-~~-~~~~~~~~~~ei~~lvg~~~~~-~~e~ry~~~ 364 (497)
++++++|+++++.|++. .. ...+.+++++|+++++||++|. .+|++|..+
T Consensus 239 ~aa~~a~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 291 (292)
T PRK11320 239 RAMNKAAENVYEAIRRDGTQKAVVDTMQTREELYEYLGYHAYEQKLDALFAQK 291 (292)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchhccCCHHHHHHhcCcHHHHHHHHHHhccC
Confidence 99999999999999854 33 3456688999999999999988 678877653
No 2
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-73 Score=565.27 Aligned_cols=282 Identities=39% Similarity=0.618 Sum_probs=271.0
Q ss_pred cHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe
Q 010948 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (497)
Q Consensus 76 ~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa 155 (497)
+++++||++|++++++++||+||++||++++++||+++|+||+++|+ ++|+||.+.+|++|+++++++|++++++||+|
T Consensus 5 ~~~~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~-slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~v 83 (289)
T COG2513 5 EPGAAFRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAA-SLGLPDLGITTLDEVLADARRITDAVDLPVLV 83 (289)
T ss_pred cHHHHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHH-hcCCCccccccHHHHHHHHHHHHhhcCCceEE
Confidence 47889999999999999999999999999999999999999999986 79999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~ 235 (497)
|+|+|||++.|+++||++++++|++|||||||++||||||..||+|+|.+||++||+||++++.+ ++|+|+||||++.
T Consensus 84 D~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~--~~fvi~ARTda~~ 161 (289)
T COG2513 84 DIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRD--PDFVIIARTDALL 161 (289)
T ss_pred eccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccC--CCeEEEeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999975 8999999999999
Q ss_pred cccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 236 ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 236 ~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
..++|+||+|+++|+|||||+||+|++.+.+++++|+++++ +|+++||+++ |++|.++.++|+++||++||||++.++
T Consensus 162 ~~~ld~AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~-~pl~~N~t~~-g~tp~~~~~~L~~~Gv~~V~~~~~~~r 239 (289)
T COG2513 162 VEGLDDAIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP-VPLPANITEF-GKTPLLTVAELAELGVKRVSYGLTAFR 239 (289)
T ss_pred hccHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC-CCeeeEeecc-CCCCCcCHHHHHhcCceEEEECcHHHH
Confidence 99999999999999999999999999999999999999998 8999999998 678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCC--CCCCCCCCHHHHHHhcCcccHHHHHHhhc
Q 010948 316 VSVRAMQDALTAIKGGRI--PSPGSMPSFQEIKETLGFNTYYEEEKRYA 362 (497)
Q Consensus 316 aa~~Am~~al~~i~~g~~--~~~~~~~~~~ei~~lvg~~~~~~~e~ry~ 362 (497)
++++|++++++.|++++. ...+.|.+.+|++++++|.+|++.+.+|.
T Consensus 240 aa~~a~~~~~~~i~~~gt~~~~~d~m~~r~~l~~~~~y~~~~~~~~~~~ 288 (289)
T COG2513 240 AALKAAEQAAREIRREGTQANVLDKMQTRKELYDLINYYDYEAKDDELF 288 (289)
T ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhcHHHHHHHHHhhc
Confidence 999999999999987543 34578889999999999999999999875
No 3
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=100.00 E-value=1.3e-72 Score=565.56 Aligned_cols=281 Identities=38% Similarity=0.641 Sum_probs=267.4
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~ 157 (497)
+++||+||++++++++||+||++||+++|++||+++|+||+++|+ ++|+||.+.+|++||++++++|++++++|||||+
T Consensus 2 ~~~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~-~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~ 80 (285)
T TIGR02317 2 GKAFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA-SLGLPDLGITTLDEVAEDARRITRVTDLPLLVDA 80 (285)
T ss_pred hHHHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEEC
Confidence 578999999999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcc
Q 010948 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (497)
Q Consensus 158 DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~ 237 (497)
|+|||++.||+++|++|+++||+|||||||++||+|||+.||+++|.+||++||+|+++|+. ++||+||||||++...
T Consensus 81 d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa~~~~ 158 (285)
T TIGR02317 81 DTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR--DEDFVIIARTDARAVE 158 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCEEEEEEcCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999987 4799999999999888
Q ss_pred cHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 010948 238 SLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (497)
Q Consensus 238 ~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa 317 (497)
++||+|+|+++|.+||||+||+|++.+.+++++++++++ +|+++|++++ +++|.++.+||++|||++|+||+++++++
T Consensus 159 g~deAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~-~Pl~~n~~~~-~~~p~~s~~eL~~lGv~~v~~~~~~~~aa 236 (285)
T TIGR02317 159 GLDAAIERAKAYVEAGADMIFPEALTSLEEFRQFAKAVK-VPLLANMTEF-GKTPLFTADELREAGYKMVIYPVTAFRAM 236 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC-CCEEEEeccC-CCCCCCCHHHHHHcCCcEEEEchHHHHHH
Confidence 999999999999999999999999999999999999998 6988899986 67899999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCC-CCCCCCCCHHHHHHhcCcccHHHHHHhhcc
Q 010948 318 VRAMQDALTAIKG-GRI-PSPGSMPSFQEIKETLGFNTYYEEEKRYAT 363 (497)
Q Consensus 318 ~~Am~~al~~i~~-g~~-~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~ 363 (497)
+++|++++..|++ |.. ..++.+.+|+||++++||++|.++|++|..
T Consensus 237 ~~a~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~ 284 (285)
T TIGR02317 237 NKAAEAVYNEIKEHGTQKGSLDDMQTRKELYELIGYYDYEKKDDSIFK 284 (285)
T ss_pred HHHHHHHHHHHHHcCCcccccccCCCHHHHHHHcChHHHHHHHHHHhc
Confidence 9999999999985 443 345678899999999999999999999863
No 4
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=100.00 E-value=5.6e-72 Score=562.94 Aligned_cols=285 Identities=40% Similarity=0.669 Sum_probs=268.5
Q ss_pred cHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe
Q 010948 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (497)
Q Consensus 76 ~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa 155 (497)
.++++||+||++++++++||+||++|||++|++||+++|+||++++++++|+||.+.+|++||+.++++|++++++||+|
T Consensus 3 ~~~~~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a 82 (294)
T TIGR02319 3 TKARTFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIM 82 (294)
T ss_pred cHHHHHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEE
Confidence 45789999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~ 235 (497)
|+|+|||++.+++++|++|+++||+|||||||++||+|||+.||+++|.+|+++||+|+++|+.+ +||+||||||++.
T Consensus 83 D~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~--~d~~I~ARTDa~~ 160 (294)
T TIGR02319 83 DADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARED--EDFTIIARTDARE 160 (294)
T ss_pred ECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccC--CCeEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999874 7999999999998
Q ss_pred cccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 236 ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 236 ~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
..++||+|+|+++|++||||+||+|++.+.+++++++++++ .|+++||+.+ +++|.++.+||++|||++|+||+++++
T Consensus 161 ~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~-~P~~~nv~~~-~~~p~~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 161 SFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEID-APLLANMVEG-GKTPWLTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcC-CCeeEEEEec-CCCCCCCHHHHHHcCCcEEEEcHHHHH
Confidence 88999999999999999999999999999999999999987 4888899986 679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCC-CCCCCC---CCHHHHHHhcCcccHHHHHHhhccc
Q 010948 316 VSVRAMQDALTAIKG-GRI-PSPGSM---PSFQEIKETLGFNTYYEEEKRYATS 364 (497)
Q Consensus 316 aa~~Am~~al~~i~~-g~~-~~~~~~---~~~~ei~~lvg~~~~~~~e~ry~~~ 364 (497)
++++||+++++.|++ |.. +..+.+ .+|+||++++||++|+++|++|.+.
T Consensus 239 aa~~a~~~~~~~l~~~G~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 292 (294)
T TIGR02319 239 AAASVLRKLFTELREAGTTQKFWDDMGLKMSFAELFEVFEYSKISELEARFVRD 292 (294)
T ss_pred HHHHHHHHHHHHHHHcCCcccccccccccCCHHHHHHHhChHHHHHHHHhhccc
Confidence 999999999999985 433 223333 7999999999999999999999764
No 5
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=100.00 E-value=2.2e-69 Score=543.45 Aligned_cols=282 Identities=32% Similarity=0.487 Sum_probs=261.6
Q ss_pred cHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe
Q 010948 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (497)
Q Consensus 76 ~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa 155 (497)
.++++||+++++++++++|||||++||+++|++||+++|+||+++|++ +|+||.+.+|++||++++++|++++++||+|
T Consensus 2 ~~~~~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~s-lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a 80 (290)
T TIGR02321 2 TKNQALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIASTVSIPLIA 80 (290)
T ss_pred ChHHHHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHH-CCCCCcccCCHHHHHHHHHHHHhccCCCEEE
Confidence 457789999999999999999999999999999999999999999976 8999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCC-CC-ccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccc
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT-RG-RKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS 233 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~-~g-k~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA 233 (497)
|+|+|||++.+|+++|++|+++||+|||||||.+||+|||. .| ++++|.+||++||+|+++++. ++||+||||||+
T Consensus 81 D~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~--~~d~~I~ARTDa 158 (290)
T TIGR02321 81 DIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARA--DRDFVVIARVEA 158 (290)
T ss_pred ECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCC--CCCEEEEEEecc
Confidence 99999999889999999999999999999999999999997 56 689999999999999999975 689999999999
Q ss_pred h-hcccHHHHHHHHHHHHhcCCCEEEecc-CCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcC-CCEEecc
Q 010948 234 R-QALSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAYP 310 (497)
Q Consensus 234 ~-~~~~ldeaIeRAkAY~eAGAD~IfIeg-~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elG-v~~Vsyp 310 (497)
+ ...++||+|+|+++|.+||||+||+|+ +.+++++++++++++ .|+++++++ +++|.++.++|++|| |++||||
T Consensus 159 ~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~-~p~pv~~~~--~~~p~~~~~~l~~lg~~~~v~~g 235 (290)
T TIGR02321 159 LIAGLGQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP-GKVPLVLVP--TAYPQLTEADIAALSKVGIVIYG 235 (290)
T ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC-CCCCeEEec--CCCCCCCHHHHHHhcCCcEEEEC
Confidence 8 567899999999999999999999998 599999999999987 356666654 568999999999999 9999999
Q ss_pred chHHHHHHHHHHHHHHHHHc-CCC-CCCCCCCCHHHHHHhcCcccHHHHHHhhcc
Q 010948 311 LSLIGVSVRAMQDALTAIKG-GRI-PSPGSMPSFQEIKETLGFNTYYEEEKRYAT 363 (497)
Q Consensus 311 ~~ll~aa~~Am~~al~~i~~-g~~-~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~ 363 (497)
++++++++++|+++++.|++ |.. ...+.|.+|+||++++||++|+++|++|.+
T Consensus 236 ~~~~~aa~~a~~~~~~~i~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~e~~~~~ 290 (290)
T TIGR02321 236 NHAIRAAVGAVREVFARIRRDGGIREVDAALPSVKEIIELQGDERMRAVEARYLK 290 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcccccccCCCHHHHHHHhChHHHHHHHHHhcC
Confidence 99999999999999999985 443 345678899999999999999999999964
No 6
>PRK15063 isocitrate lyase; Provisional
Probab=100.00 E-value=6.6e-68 Score=551.98 Aligned_cols=289 Identities=26% Similarity=0.358 Sum_probs=269.9
Q ss_pred cccchhhhhhccc-CCCCcceeecccc-------CCCccccc--cCcHHHHHHHHHhCCCceeecccCChHHHHHHHHhC
Q 010948 40 NKTNTNTLLLNTA-TNPGTINRTRVYR-------KNSTGVEA--CLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSG 109 (497)
Q Consensus 40 ~~~~~~~~~~~~~-~~pr~~~~~R~y~-------rgs~~i~~--a~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aG 109 (497)
+++++...+++|| ++|||+||+|||+ |||++++| |...+++||++|++++++.+|||||+++|++++++|
T Consensus 4 ~~~~~~~~~~~~w~~~~r~~~i~r~y~a~~v~~lrgs~~~~~~~a~~~a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aG 83 (428)
T PRK15063 4 TRTQQIEELEKDWATNPRWKGITRPYSAEDVVRLRGSVQIEHTLARRGAEKLWELLHGEPYVNALGALTGNQAVQQVKAG 83 (428)
T ss_pred cHHHHHHHHHHHhccCCccccCcCCCCHHHHHHHcCCCCCCCchHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHhC
Confidence 4456666677777 9999999999998 99999999 788899999999999999999999999999999999
Q ss_pred CcEEEecchhhhh----hhcccCCCCCCCHHHHHHHHHHHHhhcC------------------cceEeeCCCCCCCHHHH
Q 010948 110 FSFCFTSGFSISA----ARLALPDTGFISYGEMVDQGQLITQAVS------------------IPVIGDGDNGYGNAMNV 167 (497)
Q Consensus 110 fdAI~vSG~avSa----s~lG~PD~g~ltldEml~~~r~I~ra~~------------------iPVIaD~DtGYG~~~~V 167 (497)
|++||+|||++|+ +.+|+||.+++|+++|+.++++|++++. +|||||+|+|||++.||
T Consensus 84 f~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~~~d~~~~~~~~~~~~d~~~PIiADaDtGfGg~~nv 163 (428)
T PRK15063 84 LKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALRRADQIQWSEGDKGYIDYFAPIVADAEAGFGGVLNA 163 (428)
T ss_pred CCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHHHhhhHhhhhcccccccCCCCeEEECCCCCCCcHHH
Confidence 9999999999997 4789999999999999999999998863 89999999999999999
Q ss_pred HHHHHHHHHhCccEEEecCCCC-CCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhc----------
Q 010948 168 KRTVKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA---------- 236 (497)
Q Consensus 168 ~rtVk~l~~AGaAGI~IEDq~~-pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~---------- 236 (497)
++++|+|+++||+|||||||.. ||||||++||.|+|.+|+++||+||+.|++.+|.+++||||||++++
T Consensus 164 ~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~r 243 (428)
T PRK15063 164 FELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDER 243 (428)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccccccc
Confidence 9999999999999999999996 89999999999999999999999999999988999999999999764
Q ss_pred ------------------ccHHHHHHHHHHHHhcCCCEEEecc-CCCHHHHHHHHHhCCCCCccceeeecCCCCCCCC--
Q 010948 237 ------------------LSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPLVPKMANMLEGGGKTPILN-- 295 (497)
Q Consensus 237 ------------------~~ldeaIeRAkAY~eAGAD~IfIeg-~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt-- 295 (497)
.++|+||+|+++|++ |||+||+|. +++.+++++|++.++ .+.|.|++.. +++|.++
T Consensus 244 D~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~-~~~P~~~lay-n~sPsfnW~ 320 (428)
T PRK15063 244 DRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETSTPDLEEARRFAEAIH-AKFPGKLLAY-NCSPSFNWK 320 (428)
T ss_pred ccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhc-ccCccceeec-CCCCCcccc
Confidence 589999999999999 999999995 899999999999986 3457888887 6899999
Q ss_pred -----------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcC
Q 010948 296 -----------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGG 331 (497)
Q Consensus 296 -----------~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~~g 331 (497)
.+||++|||+.++||++.++++..+|.+.++.+++.
T Consensus 321 ~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~ha~~~a~~~~a~~~~~~ 367 (428)
T PRK15063 321 KNLDDATIAKFQRELGAMGYKFQFITLAGFHSLNYSMFDLAHGYARE 367 (428)
T ss_pred cccCHHHHHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999863
No 7
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=100.00 E-value=1.4e-61 Score=485.96 Aligned_cols=267 Identities=25% Similarity=0.341 Sum_probs=243.2
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHh---------CCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCc
Q 010948 81 LRQILELPGVHQGPACFDALSAKLVEKS---------GFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSI 151 (497)
Q Consensus 81 Lr~ll~~~~~iv~p~ayDalSAriae~a---------GfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~i 151 (497)
||+++++++++++||+||++||+++|++ ||+++|+||+++|+ ++|+||.+.+|++||++++++|++++++
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~-s~G~pD~~~~~~~e~~~~~~~I~~a~~~ 79 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDST-SRGVPDIEEASWTQRLDVVEFMFDVTTK 79 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHH-HCCCCCcCcCCHHHHHHHHHHHHhhcCC
Confidence 6899999999999999999999999999 99999999999985 6999999999999999999999999999
Q ss_pred ceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCc---cccCHHHHHHHHHHHHHHHHhcCCCeEEE
Q 010948 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGR---KVVSREEAVMRIKAAVDARKESGSDIVIV 228 (497)
Q Consensus 152 PVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk---~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi 228 (497)
||++|+|+| |++.++.++|++|+++||+|||||||.+||+|||.+++ .++|.+|+++||+|+++++. +++|+||
T Consensus 80 Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~--~~~~~Ii 156 (285)
T TIGR02320 80 PIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT--TEDFMII 156 (285)
T ss_pred CEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhcc--CCCeEEE
Confidence 999999999 99999999999999999999999999999999999887 79999999999999999975 5799999
Q ss_pred Eeccchh-cccHHHHHHHHHHHHhcCCCEEEecc-CCCHHHHHHHHHhCCC--CCccceeeecCCCCCCCCHHHHHhcCC
Q 010948 229 ARTDSRQ-ALSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPL--VPKMANMLEGGGKTPILNPLELEELGF 304 (497)
Q Consensus 229 ARTDA~~-~~~ldeaIeRAkAY~eAGAD~IfIeg-~~s~eei~~i~~~v~~--vP~~~N~l~~~g~tP~lt~~eL~elGv 304 (497)
||||++. ..+++|+|+|+++|++||||+||+++ +.+.+++++++++++. .|++++++. +.+|.++.+||+++||
T Consensus 157 ARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~--~~~~~~~~~eL~~lG~ 234 (285)
T TIGR02320 157 ARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVP--TSYYTTPTDEFRDAGI 234 (285)
T ss_pred EecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEec--CCCCCCCHHHHHHcCC
Confidence 9999974 56899999999999999999999996 6899999999998753 123333333 4567889999999999
Q ss_pred CEEeccchHHHHHHHHHHHHHHHHHc-CCC-CCCCCCCCHHHHHHhcCccc
Q 010948 305 KLVAYPLSLIGVSVRAMQDALTAIKG-GRI-PSPGSMPSFQEIKETLGFNT 353 (497)
Q Consensus 305 ~~Vsyp~~ll~aa~~Am~~al~~i~~-g~~-~~~~~~~~~~ei~~lvg~~~ 353 (497)
++||||++++++++++|+++++++++ |.. ...+.+.+|+|+++++||++
T Consensus 235 ~~v~~~~~~~~aa~~a~~~~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 285 (285)
T TIGR02320 235 SVVIYANHLLRAAYAAMQQVAERILEHGRLVEVEDKCAPIKEIFRLIPGTE 285 (285)
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHcCCccccccccCCHHHHHHhcCCCC
Confidence 99999999999999999999999985 443 34556799999999999974
No 8
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=100.00 E-value=6.2e-62 Score=477.53 Aligned_cols=235 Identities=46% Similarity=0.688 Sum_probs=209.4
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCC
Q 010948 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (497)
Q Consensus 81 Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtG 160 (497)
||+||++++++++||+||++|||++|++||+++|+||+++|++ +|+||.+.+|++||++++++|++++++||+||+|+|
T Consensus 1 fr~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s-~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~G 79 (238)
T PF13714_consen 1 FRQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAAS-LGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTG 79 (238)
T ss_dssp HHHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHH-TTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTT
T ss_pred ChhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHH-cCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccc
Confidence 7898888899999999999999999999999999999999975 599999999999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh--cc
Q 010948 161 YGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ--AL 237 (497)
Q Consensus 161 YG~-~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~--~~ 237 (497)
||+ +.|++++|++|+++||+||||||| +||| .+++++|.+|+++||+|+++++++ ++|+||||||++. ..
T Consensus 80 yG~~~~~v~~tv~~~~~aG~agi~IEDq----~~~~-~~~~l~~~ee~~~kI~Aa~~a~~~--~~~~I~ARTDa~~~~~~ 152 (238)
T PF13714_consen 80 YGNDPENVARTVRELERAGAAGINIEDQ----RCGH-GGKQLVSPEEMVAKIRAAVDARRD--PDFVIIARTDAFLRAEE 152 (238)
T ss_dssp SSSSHHHHHHHHHHHHHCT-SEEEEESB----STTT-STT-B--HHHHHHHHHHHHHHHSS--TTSEEEEEECHHCHHHH
T ss_pred cCchhHHHHHHHHHHHHcCCcEEEeecc----ccCC-CCCceeCHHHHHHHHHHHHHhccC--CeEEEEEeccccccCCC
Confidence 999 999999999999999999999999 8999 889999999999999999999985 5799999999974 78
Q ss_pred cHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 010948 238 SLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (497)
Q Consensus 238 ~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa 317 (497)
++||+|+|+++|.+||||+||+|++.+.+++++++++++ +| +|++..++ .++.+||++|||++|+||+++++++
T Consensus 153 ~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-~P--l~v~~~~~---~~~~~eL~~lGv~~v~~~~~~~~aa 226 (238)
T PF13714_consen 153 GLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVD-GP--LNVNPGPG---TLSAEELAELGVKRVSYGNSLLRAA 226 (238)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHS-SE--EEEETTSS---SS-HHHHHHTTESEEEETSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC-CC--EEEEcCCC---CCCHHHHHHCCCcEEEEcHHHHHHH
Confidence 999999999999999999999999999999999999985 45 66665322 3799999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 010948 318 VRAMQDALTAIK 329 (497)
Q Consensus 318 ~~Am~~al~~i~ 329 (497)
+++|++++++|.
T Consensus 227 ~~a~~~~~~~il 238 (238)
T PF13714_consen 227 MKAMRDAAEAIL 238 (238)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999874
No 9
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=100.00 E-value=3.4e-58 Score=451.31 Aligned_cols=240 Identities=47% Similarity=0.743 Sum_probs=225.5
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCC
Q 010948 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (497)
Q Consensus 81 Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtG 160 (497)
||++|++++++++|||||++||++++++||+++|+||++++++ +|+||++.+|++||++++++|++++++||++|+|+|
T Consensus 1 ~r~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s-~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G 79 (243)
T cd00377 1 LRALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAAS-LGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTG 79 (243)
T ss_pred ChhHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHh-cCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCC
Confidence 6899999999999999999999999999999999999999865 699999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhc--cc
Q 010948 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA--LS 238 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~--~~ 238 (497)
||+..++.+++++++++|++|||||||.+||+|||.+++.++|.||+++||+|++++++.+ ++|+|+||||++.. .+
T Consensus 80 ~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~ 158 (243)
T cd00377 80 YGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIARTDALLAGEEG 158 (243)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEcCchhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999865 79999999999866 79
Q ss_pred HHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHH
Q 010948 239 LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSV 318 (497)
Q Consensus 239 ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~ 318 (497)
++|+|+|+++|++||||+||++++.+.+++++++++.+ .|+++|+..+ ++ .++.+||++|||++|+||++++++++
T Consensus 159 ~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~-~Pl~~~~~~~-~~--~~~~~~l~~lG~~~v~~~~~~~~~a~ 234 (243)
T cd00377 159 LDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPD-VPLNVNMTPG-GN--LLTVAELAELGVRRVSYGLALLRAAA 234 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCC-CCEEEEecCC-CC--CCCHHHHHHCCCeEEEEChHHHHHHH
Confidence 99999999999999999999999999999999999976 5777666543 21 37999999999999999999999999
Q ss_pred HHHHHHHH
Q 010948 319 RAMQDALT 326 (497)
Q Consensus 319 ~Am~~al~ 326 (497)
++|+++++
T Consensus 235 ~a~~~~~~ 242 (243)
T cd00377 235 KAMREAAR 242 (243)
T ss_pred HHHHHHHh
Confidence 99999865
No 10
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=100.00 E-value=1.4e-49 Score=410.98 Aligned_cols=400 Identities=36% Similarity=0.459 Sum_probs=334.6
Q ss_pred hhhhcccCCCCcceeecccc-------CCCccccc--cCcHHHHHHHHH---hCCCcee-ecccCChHHHHHHHHhCCcE
Q 010948 46 TLLLNTATNPGTINRTRVYR-------KNSTGVEA--CLSPAKSLRQIL---ELPGVHQ-GPACFDALSAKLVEKSGFSF 112 (497)
Q Consensus 46 ~~~~~~~~~pr~~~~~R~y~-------rgs~~i~~--a~~~a~~Lr~ll---~~~~~iv-~p~ayDalSAriae~aGfdA 112 (497)
.++..||.++||.+|+|+|+ |||+...+ +...+.+|.+++ ++.+.+. .+|++|+.+|..+.++|+++
T Consensus 9 ~~iekww~ss~~~~ikr~ysasdv~~~~~s~~~~vypss~~a~kl~~llr~~~n~gtvs~t~Ga~dpvq~sq~~r~gl~~ 88 (492)
T KOG1260|consen 9 EEIEKWWCSSSFSRIKRNYTASDVAVLRGSSPASVYPSSRMARKLFRLLREHHNEGTVSDTLGAKDPVQASQMARAGLSA 88 (492)
T ss_pred HHHHHHhccCCcccccCCCchhhhhhcCCCCCcccchhhhhHHHHHHHHHHhccCCcccccccccCchhHHHHHHhcCCe
Confidence 46789999999999999998 99999883 666677777777 4444444 89999999999999999999
Q ss_pred EEecchhhhhhhccc--CCCCCCCHHHHHHHHHHHHhh-----------c------C---cceEeeCCCCCCCHHHHHHH
Q 010948 113 CFTSGFSISAARLAL--PDTGFISYGEMVDQGQLITQA-----------V------S---IPVIGDGDNGYGNAMNVKRT 170 (497)
Q Consensus 113 I~vSG~avSas~lG~--PD~g~ltldEml~~~r~I~ra-----------~------~---iPVIaD~DtGYG~~~~V~rt 170 (497)
+|+|||+++++..|- ||...++++.....+.+|-++ . . +|||+|+|+|||++.||+++
T Consensus 89 iyiSG~~cs~~~~~~~~pD~adyP~dtvP~~v~rif~~q~~h~r~q~~~~~i~~~~~dyl~PIIaDad~G~G~atnv~k~ 168 (492)
T KOG1260|consen 89 IYISGWQCSATLSGKLGPDRADYPYDTVPESVERIFKSQLIHDRKQIEAGSIKAEESDYLIPIIADADAGFGGATNVFKT 168 (492)
T ss_pred EEeechhhhhhhccCCCCccccCCCcCCHHHHHHHHHHhhhcchhhhhhccccccccccccceeecCCCCCchHHHHHHH
Confidence 999999999876665 999999998777766666432 1 2 89999999999999999999
Q ss_pred HHHHHHhCccEEEecCCCC-CCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHH
Q 010948 171 VKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (497)
Q Consensus 171 Vk~l~~AGaAGI~IEDq~~-pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY 249 (497)
+|.|+++||||||||||.. -|+|||+.|+.|||++|++.||+|++.+++.+|.|++|+||||+++. .|.+.+-+++..
T Consensus 169 ~K~fIeaGaAGIhleDq~~~~k~cgh~sGr~VVPt~ehv~Rl~a~R~~~Dim~sd~iivARTDs~a~-~l~tS~iDpRDh 247 (492)
T KOG1260|consen 169 VKGFIEAGAAGIHLEDQACGEKKCGHMSGRVVVPTEEHVRRLKAARLAADIMGADTIIVARTDSRAA-SLLTSLIDPRDH 247 (492)
T ss_pred HHHHHHcccceeeeehhhcccccccccCCcEEecHHHHHHHHHHHHHHHHHhCCCeEEEEeccchhh-hhhhccCCchhh
Confidence 9999999999999999995 58999999999999999999999999999999999999999999854 455666678888
Q ss_pred HhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHH
Q 010948 250 ADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIK 329 (497)
Q Consensus 250 ~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~ 329 (497)
..+|++..=++. ..++++.++..-|.+|.+-||.+.+++.|.+....+.+.+++.+-|+.+.......++...|-.++
T Consensus 248 ~~i~g~~~~~~s--~~~emk~~~~~~~~~~k~~~~w~~~~kl~~f~ea~~~e~~~~~~~~~~~ei~~~~i~fdw~lpr~k 325 (492)
T KOG1260|consen 248 AFIGGATLSNDS--SLEEMKDFCNVGPLVAKLENMWESGAKLPTFNEAVLEEITYREVKYLASEIGVSEIFFDWELPRTK 325 (492)
T ss_pred hhhhccccchhh--HHHHHHhhcccchhhHHHHHhhhhccccccccHHHHhhhhhhhhhhhHhhhhhhhhhccccccccc
Confidence 888888877666 678999999877778999999998899999999999999999999999999988999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccc-------------c-----cc-------ccccccCCCCCCCCCC
Q 010948 330 GGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSM-------------R-----RL-------SSENVTSNSYDTQPMA 384 (497)
Q Consensus 330 ~g~~~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~~~-------------~-----~~-------~~~~~~~~~~~~~~~~ 384 (497)
+|...+.++ ....+|.+.++|.-| +.+..|.... . +. +..-+.+..|++|..+
T Consensus 326 eG~y~~~gs-a~q~~I~rai~fApy-~d~~w~et~~pd~~eakeFsegv~~~~pd~m~ay~~sPsfn~~~a~~~~~Q~~~ 403 (492)
T KOG1260|consen 326 EGRYRFKGS-AIQEEIGRAIAFAPY-ADLIWMETSYPDRQEAKEFSEGVKKQYPDSMLAYNFSPSFNWKKAGFSDEQLVA 403 (492)
T ss_pred CceecCCCc-hHHHHHHHHHccCch-hhhhhhhcCCCCHHHHHHHHHHhhhcChhhHhhhcCCCCCCcccccCCHHHHHh
Confidence 998877776 677889998988877 3233332211 1 00 1112233556667776
Q ss_pred ccchhhhcCCCCCCeeEeeCccccccCCCCCCCCCCCcceeeEEEEEEecCCCceeeccccc-----cccchhhhhhccc
Q 010948 385 QDDTARRGQSSQDPIVEVITPEVYTNSGAGGSRDAFSGIWSRTLRVKITGRDGFEKLDVRIP-----AGFLDGITNVVPA 459 (497)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 459 (497)
-+|..++ .+-+++||||..|+ ..++||.-+|++-++.+|.|+||.||+||++| +++.+|+.+++-+
T Consensus 404 f~~~l~~----~G~~~q~itla~~~-----~~~~a~~d~~~~~k~dGi~~y~~~E~~dv~~hq~~~~~eyfd~l~~lvqg 474 (492)
T KOG1260|consen 404 FDDDLGK----MGFILQVITLAGLH-----ANRNAFVDLSNIFKKDGIKGYDGREKTDVKKHQEPSGTEYFDGLSRLVQG 474 (492)
T ss_pred hhhhHhh----cCeEEEEeehhHhc-----ccchhHHHHHHHHHhcccccccccchhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 7777766 77899999999998 89999999999999999999999999999997 4557787777653
No 11
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=100.00 E-value=1.4e-45 Score=390.99 Aligned_cols=277 Identities=28% Similarity=0.334 Sum_probs=240.6
Q ss_pred hhhhcccC-CCCcceeecccc-------CCCccccc--cCcHHHHHHHHHhCC----CceeecccCChHHHHHHHHhCCc
Q 010948 46 TLLLNTAT-NPGTINRTRVYR-------KNSTGVEA--CLSPAKSLRQILELP----GVHQGPACFDALSAKLVEKSGFS 111 (497)
Q Consensus 46 ~~~~~~~~-~pr~~~~~R~y~-------rgs~~i~~--a~~~a~~Lr~ll~~~----~~iv~p~ayDalSAriae~aGfd 111 (497)
..+++||. +|||+||+|||+ |||+++++ |...+++|++||+.. .++..+||||+.+|.+++++ |+
T Consensus 2 ~~i~~~w~~~pR~~~i~RpYta~dVv~lRGs~~~~~~~s~~~a~kLw~ll~~~~~~~~~~~tlGAld~~qa~q~~ka-l~ 80 (527)
T TIGR01346 2 QEIQKWWDTNPRWNGTTRPYTARDVADLRGSVIPEHYLSRRMAEKLWRALTQHGDNKTYSNTFGALDPVQASQMAKY-LD 80 (527)
T ss_pred hhhhhhhccCccccCCcCCCCHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhhhcCCceeeccccCHHHHHHHHHH-hh
Confidence 35678885 999999999998 99999665 888899999999864 78999999999999999999 99
Q ss_pred EEEecchhhhhhh----cccCCCCCCCHHHHHHHHHHHHhh---------------------------cCcceEeeCCCC
Q 010948 112 FCFTSGFSISAAR----LALPDTGFISYGEMVDQGQLITQA---------------------------VSIPVIGDGDNG 160 (497)
Q Consensus 112 AI~vSG~avSas~----lG~PD~g~ltldEml~~~r~I~ra---------------------------~~iPVIaD~DtG 160 (497)
+||+|||++|++. .++||.+.+++++++..+++|.++ ..+|||||+|+|
T Consensus 81 aIY~SGwq~Sa~~~~~~e~~PD~s~yp~~tVp~~V~~i~~aq~~hDr~q~~~~~~~~~~~r~~~~~~D~~iPIiaD~DtG 160 (527)
T TIGR01346 81 AIYLSGWQCSSTANTSNEPGPDLADYPADTVPNKVEHLFNAQLFHDRKQREARDTSVDNERSKTPYIDYLVPIVADGDAG 160 (527)
T ss_pred heehhHHHHHhhhcccCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHhccccchhhhccccccccccceEEECCCC
Confidence 9999999999652 389999999999999999999776 569999999999
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEecCCCC-CCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh----
Q 010948 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ---- 235 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AGaAGI~IEDq~~-pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~---- 235 (497)
||+..+++++|++|+++||+|||||||.. +|+|||++|++|+|++|+++||+|++.+++.+|++|+||||||+.+
T Consensus 161 yG~~~~v~~~vk~~ieaGAaGI~IEDq~~~~KkcGh~~gk~Lvp~~e~v~RI~AAr~Aad~~g~d~vI~ARTDA~~A~Li 240 (527)
T TIGR01346 161 FGGATAVFKLQKAFIERGAAGVHWEDQLSSEKKCGHMAGKVLIPVQEHVNRLVAARLAADIMGVPTLVVARTDAEAATLI 240 (527)
T ss_pred CCCcHHHHHHHHHHHHcCCeEEEEEcCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEEecCccccccc
Confidence 99999999999999999999999999985 8999999999999999999999999999998899999999999910
Q ss_pred --------------------------------------------------------------------------------
Q 010948 236 -------------------------------------------------------------------------------- 235 (497)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (497)
T Consensus 241 tS~iD~rDh~fI~G~tn~~~~~l~~~l~~a~a~~~~Gad~~~~e~~W~~~a~l~tf~eav~~~i~~~~~~~~~~~~~~~~ 320 (527)
T TIGR01346 241 TSDVDERDHPFITGATNPNLKPLADVLARAMASGKSGADLQAVEDEWMAMADLKLFSDCVVDGIKALNVSEKGRRLGEWM 320 (527)
T ss_pred cccCCcccchhhcCCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCccHHHHHHHHHhhccccchHHHHHHHH
Confidence
Q ss_pred ------------------------------------------cccHHHHHHHHHHHHhcCCCEEEecc-CCCHHHHHHHH
Q 010948 236 ------------------------------------------ALSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFC 272 (497)
Q Consensus 236 ------------------------------------------~~~ldeaIeRAkAY~eAGAD~IfIeg-~~s~eei~~i~ 272 (497)
..+++.||.|+.+|+- .||+|++|. .|+.+++++|+
T Consensus 321 ~~~~~~~~~s~~~~r~~A~~~~~~~~~fdwd~~Rt~EG~Y~~k~G~~~aI~R~~a~AP-yaDliW~ET~~Pdl~~A~~Fa 399 (527)
T TIGR01346 321 QQTNTGNVLSYYQAKELAEKLGISNLFWDWDLPRTREGFYRVKGGLEPAIARAKAFAP-YADLIWMETSTPDLELAKKFA 399 (527)
T ss_pred hhcccccccchHHHHHHHHHhcCCCCcccCCCCcCCCcceeecCChHHHHHHHHhcCc-cccEEEecCCCCCHHHHHHHH
Confidence 0146788999999976 799999997 68889999998
Q ss_pred Hh----CCCCCccceeeecCCCCCCCC-------------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 010948 273 EI----SPLVPKMANMLEGGGKTPILN-------------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (497)
Q Consensus 273 ~~----v~~vP~~~N~l~~~g~tP~lt-------------~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~~ 330 (497)
+. +|+..+..| .+|.++ ..||.+|||..-...+..+...-.+|.+.....+.
T Consensus 400 ~~v~~~~P~k~LaYN------~SPSFNW~~~~~d~~~~~F~~~L~~lGy~~QfITLaG~H~~~~~~~~lA~~y~~ 468 (527)
T TIGR01346 400 EGVKSKFPDQLLAYN------LSPSFNWSAHMEDDEIAKFIQELGDLGYKWQFITLAGFHSLALGMFDFAYDFAQ 468 (527)
T ss_pred HHHHHHCCCCeEEec------CCCCccccccCCHHHHHHHHHHHHhcCceEEEEehHhhhhhHHHHHHHHHHHHH
Confidence 75 444333333 345444 57899999999999888888888888887777764
No 12
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=100.00 E-value=1.1e-44 Score=372.32 Aligned_cols=286 Identities=26% Similarity=0.359 Sum_probs=248.2
Q ss_pred cchhhhhhcccCCCCcceeecccc-------CCCccccc--cCcHHHHHHHHHhC---CCceeecccCChHHHHHHHHhC
Q 010948 42 TNTNTLLLNTATNPGTINRTRVYR-------KNSTGVEA--CLSPAKSLRQILEL---PGVHQGPACFDALSAKLVEKSG 109 (497)
Q Consensus 42 ~~~~~~~~~~~~~pr~~~~~R~y~-------rgs~~i~~--a~~~a~~Lr~ll~~---~~~iv~p~ayDalSAriae~aG 109 (497)
.....++++||++|||+||+|+|+ |||++++| +...+.+||++++. +..+...||||+..|....++|
T Consensus 6 e~~~~~~~~w~~~~rw~~I~R~YsA~dVv~lrgs~~~~~~~a~~~A~kl~~ll~e~~~~~~~~tlGal~g~qa~Q~~kag 85 (433)
T COG2224 6 EQEEALEQEWWEDPRWKGIKRPYSAEDVVKLRGSVPIEYTLARLGAAKLWELLHELFKEKYVNTLGALTGGQAVQMAKAG 85 (433)
T ss_pred HHHHHHHHhhccCCCcccCCCCccHHHHHHHhCCCCcCccHHHHHHHHHHHHHHHhccccchhccccCCHHHHHHHHHhh
Confidence 346678999999999999999998 99999999 77789999999988 7788999999999999999999
Q ss_pred CcEEEecchhhhh--hhc--ccCCCCCCCHHHHHHHHHHHHhh--------------------c--CcceEeeCCCCCCC
Q 010948 110 FSFCFTSGFSISA--ARL--ALPDTGFISYGEMVDQGQLITQA--------------------V--SIPVIGDGDNGYGN 163 (497)
Q Consensus 110 fdAI~vSG~avSa--s~l--G~PD~g~ltldEml~~~r~I~ra--------------------~--~iPVIaD~DtGYG~ 163 (497)
.++||+|||.+|+ +.. -+||..+++.+.+...+++|-++ + -+|||||+|.|||+
T Consensus 86 l~aiYlSGWqvaa~~n~~~~~~PDqs~Yp~~sVP~~V~rI~~al~~aD~~q~~~~~~~~~~~~~Dy~~PIiADadaGfGg 165 (433)
T COG2224 86 IKAIYLSGWQVAADANLAGEMYPDQSLYPANSVPDVVKRINNALRRADQIQWSEGKGPGDRQAVDYFLPIVADAEAGFGG 165 (433)
T ss_pred hheEEeccceeeccccccCCCCCCcccCccccccHHHHHHHHHHHHHHHHHHHhccccccccccccccceeeccccCCCc
Confidence 9999999999983 333 48999999999999999988642 1 27999999999999
Q ss_pred HHHHHHHHHHHHHhCccEEEecCCC-CCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhc------
Q 010948 164 AMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA------ 236 (497)
Q Consensus 164 ~~~V~rtVk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~------ 236 (497)
+.++++..|+|+|+||+|||||||. .-|+|||++||.|||.+|++.||.|++.+.+.+|.+.+|+||||+.++
T Consensus 166 ~~~~~~L~K~~IEaGaagiH~EDQ~a~~KkCGH~gGkVlVPt~e~i~rL~AaRla~Dvmgv~tvlvARTDa~aA~Lits~ 245 (433)
T COG2224 166 PLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHLGGKVLVPTQEAIRRLNAARLAADVMGVPTILVARTDAEAADLITSD 245 (433)
T ss_pred hHHHHHHHHHHHHhCCceeehhhhcccccccccCCCeEeccHHHHHHHHHHHHHHHHHhCCCceEEEecchhhccccccc
Confidence 9999999999999999999999999 579999999999999999999999999999999999999999999652
Q ss_pred ----------------------ccHHHHHHHHHHHHhcCCCEEEecc-CCCHHHHHHHHHhCCCCCccceeeecCCCCCC
Q 010948 237 ----------------------LSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (497)
Q Consensus 237 ----------------------~~ldeaIeRAkAY~eAGAD~IfIeg-~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (497)
.+++.+|+|+.+|+--| |+|++|. .|+.+++++|++.+... .|--||.. +.+|.
T Consensus 246 ~D~~d~~fi~~~Rt~eG~y~~k~Gie~aI~r~lA~Apya-Dl~W~ET~~Pdle~ak~Fae~Ih~~-~P~~~LaY-N~SPS 322 (433)
T COG2224 246 VDPSDGEFITGERTSEGFYRTKGGIEQAIARGLAYAPYA-DLLWCETSTPDLEEARQFAEAIHAK-YPGKLLAY-NCSPS 322 (433)
T ss_pred CCcccCCccCCCcCCCceeeecCchHHHHHHHHhcCccc-ceEEEecCCCCHHHHHHHHHHHHHh-CCcceeee-cCCCC
Confidence 26899999999999997 9999985 58899999999865321 12224443 44665
Q ss_pred CC-------------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 010948 294 LN-------------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (497)
Q Consensus 294 lt-------------~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~~ 330 (497)
++ ..||.+|||+.-..+...+...-.+|-+.....+.
T Consensus 323 FNW~~~~~de~i~~Fq~el~~mG~~fqfITlag~H~~~~s~~elA~~y~~ 372 (433)
T COG2224 323 FNWKKNLDDETIAKFQQELGKMGYKFQFITLAGFHSLNYSMFELARAYAQ 372 (433)
T ss_pred cCcccccCHHHHHHHHHHHHhheeeEEEEechhhhhhhhhHHHHHHHHHH
Confidence 54 47999999998888888888888888887777764
No 13
>PLN02892 isocitrate lyase
Probab=100.00 E-value=1.4e-42 Score=369.66 Aligned_cols=286 Identities=22% Similarity=0.271 Sum_probs=239.2
Q ss_pred chhhhhhcccCCCCcceeecccc-------CCCccccc-cCcHHHHHHHHHhCC----CceeecccCChHHHHHHHHhCC
Q 010948 43 NTNTLLLNTATNPGTINRTRVYR-------KNSTGVEA-CLSPAKSLRQILELP----GVHQGPACFDALSAKLVEKSGF 110 (497)
Q Consensus 43 ~~~~~~~~~~~~pr~~~~~R~y~-------rgs~~i~~-a~~~a~~Lr~ll~~~----~~iv~p~ayDalSAriae~aGf 110 (497)
++...+++||.+|||+||+|||+ |||++++| |...+++||+||+.. .++...||.|+..|....+ |.
T Consensus 20 ~~v~~ie~~w~~pR~~~ikRpYta~dV~~lRGs~~~~y~s~~~A~kLw~lL~~~~~~~~~~~t~Galdp~Q~~Qm~k-~l 98 (570)
T PLN02892 20 AEVAEVEAWWRSERFKLTRRPYSARDVAALRGTLKQSYASNEMAKKLWRTLKTHQANGTASRTFGALDPVQVAQMAK-HL 98 (570)
T ss_pred HHHHHHHHhhcChhhcCCcCCCCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhhccCCceeeccCCcHHHHHHHHc-cC
Confidence 45566899999999999999998 99999999 888899999999864 6889999999999998877 99
Q ss_pred cEEEecchhhhhhh----cccCCCCCCCHHHHHHHHHHHHhh-------------------------cC--cceEeeCCC
Q 010948 111 SFCFTSGFSISAAR----LALPDTGFISYGEMVDQGQLITQA-------------------------VS--IPVIGDGDN 159 (497)
Q Consensus 111 dAI~vSG~avSas~----lG~PD~g~ltldEml~~~r~I~ra-------------------------~~--iPVIaD~Dt 159 (497)
++||+|||++|++. --+||..++|++.+...+++|.++ .+ +|||||+|+
T Consensus 99 ~~iYvSGWq~ss~a~t~~e~~PD~adYP~~tVP~~V~ri~~Aq~~hDr~q~~~r~~~~~~~r~~~~~~Dyl~PIiADaEt 178 (570)
T PLN02892 99 DTIYVSGWQCSSTATSTNEPGPDLADYPMDTVPNKVEHLFFAQLYHDRKQREARMSMSREERARTPYVDYLKPIIADGDT 178 (570)
T ss_pred ceEEechhhhcCccccCCCCCCCcccCccccccHHHHHHHHHHHHHHHHHHHHHhccCHHHhcCCCccccccceeeecCC
Confidence 99999999998642 358999999999999988888432 22 899999999
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEecCCC-CCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcc-
Q 010948 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL- 237 (497)
Q Consensus 160 GYG~~~~V~rtVk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~- 237 (497)
|||+..+++++|++|+++||+|||||||. ++|+|||++|+.|+|.+++++||+|++.+.+.+|++|+||||||+.++.
T Consensus 179 GyG~~~~~~~~vk~~ieaGAaGIhIEDQ~~~~KkCGh~~gk~Lvp~~e~v~RI~AAR~aad~~G~d~vI~ARTDA~~a~L 258 (570)
T PLN02892 179 GFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMGGKVLVATSEHINRLVAARLQFDVMGVETVLVARTDAVAATL 258 (570)
T ss_pred CCCccHHHHHHHHHHHHcCCeEEEEECCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhccc
Confidence 99999888899999999999999999998 7999999999999999999999999999998899999999999995310
Q ss_pred --------------------------------------------------------------------------------
Q 010948 238 -------------------------------------------------------------------------------- 237 (497)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (497)
T Consensus 259 its~iD~RDh~FI~Gat~~~~~~~~l~~~~~~a~~~g~~g~~l~~~e~~W~~~a~l~tf~eav~~~i~~~~~~~~~~~~~ 338 (570)
T PLN02892 259 IQSNIDARDHQFILGATNPALRGKPLATLLAEAMAAGKSGAELQAIEDEWLAQAQLMTFSEAVADAIKSMNISENEKRRR 338 (570)
T ss_pred chhhhccccccceeeecCCccccCCHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCccHHHHHHHHHHhcccccchhHHH
Confidence
Q ss_pred -----------------------------------------------cHHHHHHHHHHHHhcCCCEEEecc-CCCHHHHH
Q 010948 238 -----------------------------------------------SLEESLRRSRAFADAGADVLFIDA-LASKEEMK 269 (497)
Q Consensus 238 -----------------------------------------------~ldeaIeRAkAY~eAGAD~IfIeg-~~s~eei~ 269 (497)
+++-+|.|+.+|+- +||+|++|. .|+.++++
T Consensus 339 ~~~~~~~~~~~~s~~e~r~lA~~~~~~~v~fdwd~~Rt~EG~Y~~k~G~~~aI~R~~A~AP-yaDliW~ET~~Pdl~~A~ 417 (570)
T PLN02892 339 LNEWMASVPKCLSNEQARRIAAKLGVANVFWDWDLPRTREGFYRFRGSVKACIVRGRAFAP-YADLIWMETASPDLAEAT 417 (570)
T ss_pred HHHHHhhccccCCHHHHHHHHHHhCCCCCcccCCCCcCcccceeeCCChHHHHHHHHhccc-ccCEEEecCCCCCHHHHH
Confidence 24557899999965 899999997 58889999
Q ss_pred HHHHh----CCCCCccceeeecCC-CCCCCC-------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 010948 270 AFCEI----SPLVPKMANMLEGGG-KTPILN-------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (497)
Q Consensus 270 ~i~~~----v~~vP~~~N~l~~~g-~tP~lt-------~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~~ 330 (497)
+|++. +|+..+..|....=. +...++ ..||.+|||..-...+..+...-.+|.+..+..+.
T Consensus 418 ~Fa~~V~~~~P~k~LaYNlSPSFNW~~~g~~d~~i~~F~~dLaklGy~~QfITLaG~H~~~~~~~~lA~~~~~ 490 (570)
T PLN02892 418 KFAEGVKAKHPEIMLAYNLSPSFNWDASGMTDEQMAEFIPRLARLGYCWQFITLAGFHANALVVDTFARDYAR 490 (570)
T ss_pred HHHHHHHHhCCCCeeeecCCCCcCCCCCCCCHHHHHHHHHHHHhcCceEEEEchHhhhhhHHHHHHHHHHHHH
Confidence 99865 454434444321100 000122 37899999999999888888888888887777754
No 14
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=100.00 E-value=4e-40 Score=323.93 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=162.1
Q ss_pred HHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-cceEeeCC
Q 010948 80 SLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIGDGD 158 (497)
Q Consensus 80 ~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-iPVIaD~D 158 (497)
.|+++.++++++++|||||++||++++++|||++++||++.+ +.+|+||++.+|++||++|+++|+++++ +||++|+|
T Consensus 3 ~~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a-~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~ 81 (240)
T cd06556 3 LLQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGM-TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLP 81 (240)
T ss_pred hHHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHH-HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 467777788999999999999999999999999999998886 5799999999999999999999999996 79999999
Q ss_pred CCCCCH-HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh--
Q 010948 159 NGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-- 235 (497)
Q Consensus 159 tGYG~~-~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~-- 235 (497)
+|||+. +++.+++++|+++||+|||||||. +++++|++++++ .|+|+||||+..
T Consensus 82 ~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~-----------------~~~~~i~ai~~a------~i~ViaRtd~~pq~ 138 (240)
T cd06556 82 FGAYGAPTAAFELAKTFMRAGAAGVKIEGGE-----------------WHIETLQMLTAA------AVPVIAHTGLTPQS 138 (240)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH-----------------HHHHHHHHHHHc------CCeEEEEeCCchhh
Confidence 999864 899999999999999999999982 688899998876 389999999942
Q ss_pred -------------cccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceee
Q 010948 236 -------------ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANML 285 (497)
Q Consensus 236 -------------~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l 285 (497)
..+++++|+||++|++||||+||+|++ +.+++++|+++++ +|+..|..
T Consensus 139 ~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~~~-~P~~~~ga 199 (240)
T cd06556 139 VNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV-PVELAKQITEALA-IPLAGIGA 199 (240)
T ss_pred hhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhCC-CCEEEEec
Confidence 246899999999999999999999999 8899999999976 67665543
No 15
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=100.00 E-value=4.6e-40 Score=348.01 Aligned_cols=278 Identities=27% Similarity=0.356 Sum_probs=209.2
Q ss_pred hhhhhcccCCCCcceeecccc-------CCCccccc-cCcHHHHHHHHHhCC----CceeecccCChHHHHHHHHhCCcE
Q 010948 45 NTLLLNTATNPGTINRTRVYR-------KNSTGVEA-CLSPAKSLRQILELP----GVHQGPACFDALSAKLVEKSGFSF 112 (497)
Q Consensus 45 ~~~~~~~~~~pr~~~~~R~y~-------rgs~~i~~-a~~~a~~Lr~ll~~~----~~iv~p~ayDalSAriae~aGfdA 112 (497)
...+++||++|||+||+|+|+ |||++++| |...+++|+++++.. .+....|+.|+.....+. +|+++
T Consensus 2 v~~i~~ww~~pR~~~i~R~Yta~dV~~~Rgs~~~~y~s~~~a~kLw~ll~~~~~~~~~~~t~g~~~p~~~~q~~-~~l~~ 80 (526)
T PF00463_consen 2 VEEIEKWWASPRWKGIKRPYTAEDVVKLRGSLPIEYPSSIQAKKLWKLLEEHFKNGYVSHTGGATDPQQVQQMA-KGLEA 80 (526)
T ss_dssp HHHHHHHHTSGGGTT---SS-HHHHHHHTTSS---HHHHHHHHHHHHHHHHTSSSSSEEEEBBSSHHHHHHHHH-CT-SS
T ss_pred hHHHHHHhcCccccCCCCCCCHHHHHHhccCCCCCChHHHHHHHHHHHHHhhhhcCCcceecccccHHHHHHHH-hcCCe
Confidence 456789999999999999998 99999888 888999999999863 567788999999888876 59999
Q ss_pred EEecchhhhhhh----cccCCCCCCCHHHHHHHHHHHHhh-------------------------cC--cceEeeCCCCC
Q 010948 113 CFTSGFSISAAR----LALPDTGFISYGEMVDQGQLITQA-------------------------VS--IPVIGDGDNGY 161 (497)
Q Consensus 113 I~vSG~avSas~----lG~PD~g~ltldEml~~~r~I~ra-------------------------~~--iPVIaD~DtGY 161 (497)
||+|||++|+.. --+||...++++.+...+++|.++ ++ .|||||+|+||
T Consensus 81 iYvSGWq~ss~~s~~~e~~PD~s~YP~~tVP~~V~ri~~aq~~~D~~q~~~~~~~~~~~r~~~~~~Dyl~PIIADad~Gf 160 (526)
T PF00463_consen 81 IYVSGWQCSSDASTSNEPYPDQSDYPYDTVPNKVERIFNAQLRHDRKQWEERLSMTKEERAKTPYIDYLRPIIADADAGF 160 (526)
T ss_dssp EEE-HHHHHHHS-TT-S--SSSS-S-TTHHHHHHHHHHHHHHHHHHHHHHCTCSTTSTTHTTS--S-SS--EEEE-TTTS
T ss_pred EEeeceeeecccccCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHhcccccchhhcccCcccceeeeeeccccCC
Confidence 999999998532 358999999999999999988542 12 89999999999
Q ss_pred CCHHHHHHHHHHHHHhCccEEEecCCC-CCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhc----
Q 010948 162 GNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA---- 236 (497)
Q Consensus 162 G~~~~V~rtVk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~---- 236 (497)
|++.+|++.+|.|+|+||+|||||||. ..|+|||++||.|||++|++.|+.|++.+.+.+|.+.+|+||||+.++
T Consensus 161 GG~~~v~kL~K~fiEaGaAgiH~EDQ~~~~KKCGH~~GKVlVPt~e~i~rL~AaRl~~Dimg~~~liiARTDa~~A~Lit 240 (526)
T PF00463_consen 161 GGLTAVMKLTKLFIEAGAAGIHFEDQLSGEKKCGHMGGKVLVPTSEHINRLVAARLQADIMGVPTLIIARTDAEAATLIT 240 (526)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEESB-GGG-B-STTSBEEE--HHHHHHHHHHHHHHHHHHT---EEEEEE-TTTEEEES
T ss_pred CCHHHHHHHHHHHHhcCCceechhhccccccceeccCCcEEecHHHHHHHHHHHHHHHHHhCCCcEEEEeechhhhcccc
Confidence 999999999999999999999999999 489999999999999999999999999999999999999999999531
Q ss_pred --------------------------------------------------------------------------------
Q 010948 237 -------------------------------------------------------------------------------- 236 (497)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (497)
T Consensus 241 s~iD~rDh~fi~G~~~~~~~pl~~~l~~ae~~G~~g~ei~~~E~~W~~~A~L~TFdEAV~~~i~~~~~~~k~~~~~~~~~ 320 (526)
T PF00463_consen 241 SDIDPRDHPFILGATNPEVKPLAEVLAEAEAAGASGAEIQAIEDEWYKKAGLMTFDEAVEDAIKASEYSNKKSRIEEYLS 320 (526)
T ss_dssp -TTSCCCGGGEEEEE-TTS--HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-SHHHHHHHHHTSS-S-HHHHHHHHHH
T ss_pred cCccccccchhcCCCCCCCccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeEHHHHHHHHHHhccccchHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------ccHHHHHHHHHHHHhcCCCEEEecc-CCCHHHHHHHHH
Q 010948 237 ------------------------------------------LSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCE 273 (497)
Q Consensus 237 ------------------------------------------~~ldeaIeRAkAY~eAGAD~IfIeg-~~s~eei~~i~~ 273 (497)
.+++-+|.|+.+|+ -.||+|++|. .|+.+++++|++
T Consensus 321 ~~~~~~~~S~~eaR~lAk~l~g~~vfFDWD~pRt~EG~Y~~k~g~~~aI~Ra~A~a-PyADllW~ET~~Pd~~~a~~Fa~ 399 (526)
T PF00463_consen 321 KVKGKSFLSLREARALAKELLGKDVFFDWDAPRTREGYYRFKGGTEAAIARALAFA-PYADLLWMETKTPDLAQAKEFAE 399 (526)
T ss_dssp HHTT--HH---HHHHHHHHHHSS--GBBTTTCE-TTS-EEE--SHHHHHHHHHHHG-GG-SEEEE--SS--HHHHHHHHH
T ss_pred HccccCcccHHHHHHHHHHhcCCCceEecccccChhhchhcCCChHHHHHHHHhhC-cccCeeeEecCCCCHHHHHHHHH
Confidence 03677899999987 6699999986 478889988886
Q ss_pred h----CCCCCccceeeecCCCCCCCC-------------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 010948 274 I----SPLVPKMANMLEGGGKTPILN-------------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (497)
Q Consensus 274 ~----v~~vP~~~N~l~~~g~tP~lt-------------~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~~ 330 (497)
. +|+.-+..|. +|.++ ..+|.+|||..-..+...+...-.+|.+.++..+.
T Consensus 400 ~V~~~~P~k~LaYNl------SPSFNW~~~~~~~ei~~F~~dLak~G~~~QfItLaG~H~~~~~~~~lAk~y~~ 467 (526)
T PF00463_consen 400 GVHAVYPGKKLAYNL------SPSFNWDAAGSDDEIKSFQWDLAKLGYVWQFITLAGFHSLALSMFELAKDYKK 467 (526)
T ss_dssp HHHHHSTT-EEEEEE-------SSSTHHHHS-HHHHHHHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcceEEecC------CcccchhhhhhhhHHHHHHHHHHhhhHheeeeeHHHHHHhHHHHHHHHHHHHH
Confidence 4 5553344444 45444 47899999999999999998888888888887764
No 16
>PRK06498 isocitrate lyase; Provisional
Probab=100.00 E-value=6.8e-38 Score=328.96 Aligned_cols=273 Identities=24% Similarity=0.281 Sum_probs=220.8
Q ss_pred cccCCCCcceeecccc---C--CCccccc--cCcHHHHHHHHHhC-----CCceeecccCChHHHHHHHHh---CC----
Q 010948 50 NTATNPGTINRTRVYR---K--NSTGVEA--CLSPAKSLRQILEL-----PGVHQGPACFDALSAKLVEKS---GF---- 110 (497)
Q Consensus 50 ~~~~~pr~~~~~R~y~---r--gs~~i~~--a~~~a~~Lr~ll~~-----~~~iv~p~ayDalSAriae~a---Gf---- 110 (497)
....+|||+||.--+. | |++.+++ |...++.||++++. ...+...|||++..|...-.+ ||
T Consensus 15 ~~~~~~~w~~i~~e~v~rlr~q~~~~~~~~iA~~~a~~~~~~m~~yd~d~~~y~~slGa~~g~~a~Q~~~a~k~~~~~t~ 94 (531)
T PRK06498 15 KEKQGSTWNAINPESAARMRLQNRFKTGLDIAKYTAKIMRADMAAYDADSSKYTQSLGCWHGFIAQQKMISIKKHFGTTK 94 (531)
T ss_pred HhhcCCCCCCCCHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHhhcccchhhhhhhcCCcHHHHHHHHHHHHhccCCCc
Confidence 3455899999943332 5 9999998 88999999999987 567889999999999888887 99
Q ss_pred -cEEEecchhhhhhh--c-ccCCCCCCCHHHHHHHHHHHHhh--------------------------------------
Q 010948 111 -SFCFTSGFSISAAR--L-ALPDTGFISYGEMVDQGQLITQA-------------------------------------- 148 (497)
Q Consensus 111 -dAI~vSG~avSas~--l-G~PD~g~ltldEml~~~r~I~ra-------------------------------------- 148 (497)
++||+|||.+|+.. . -+||..+++.+.+...+++|-.+
T Consensus 95 ~~~iYlSGW~vAa~~n~~g~~PDqS~yp~~sVP~lv~~i~~~l~~AD~~~~~~lf~~~~~a~~~g~~~~~~~~~~~~d~~ 174 (531)
T PRK06498 95 RRYLYLSGWMVAALRSEFGPLPDQSMHEKTSVPALIEELYTFLRQADARELNDLFRELDAAREAGDKAKEAAIQAKIDNF 174 (531)
T ss_pred cceEEehhhHHHhhhhccCCCCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhccccc
Confidence 99999999998742 2 38999999988777766666221
Q ss_pred --cCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCC-CCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCC-C
Q 010948 149 --VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS-D 224 (497)
Q Consensus 149 --~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~-pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~-d 224 (497)
.-+|||||+|+|||+++|+++++|+|+++||+|||||||++ ||+|||++||.|+|.+||+.||+||+.|++.+|. |
T Consensus 175 ~~~~iPIIADaDtGfG~~~nv~r~vk~~ieAGAAgIhIEDQv~~~KkCGHl~GK~lVp~ee~i~KI~AAr~A~d~~G~~D 254 (531)
T PRK06498 175 ETHVVPIIADIDAGFGNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKIRAVRYAFLELGVDD 254 (531)
T ss_pred cccccceEEEcCCCCCcHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCCCCEeccHHHHHHHHHHHHHHHHhcCCCC
Confidence 12899999999999999999999999999999999999997 8999999999999999999999999999998775 5
Q ss_pred eEEEEeccchhcc--------------------------------------------------------------cHHHH
Q 010948 225 IVIVARTDSRQAL--------------------------------------------------------------SLEES 242 (497)
Q Consensus 225 fvIiARTDA~~~~--------------------------------------------------------------~ldea 242 (497)
|+|+||||++++. +.|.+
T Consensus 255 ~vIIARTDA~~A~L~~~Id~~~~~g~~~~~~~~w~~~~~i~~~~~~~~~~~i~~~~~~~~~~Rt~eG~Y~~k~gtg~~~~ 334 (531)
T PRK06498 255 GVIVARTDSLGAGLTQQIAVSQEPGDLGDQYNSFLDCEEIDAADLGNGDVVIKRDGKLLRPKRLPSGLFQFREGTGEDRC 334 (531)
T ss_pred EEEEEecchhhcCCccccccccccchhhHHHHhhhhhcccCHHHhcccchhHhhcccccCCCCCcccceeecCCCchHHH
Confidence 9999999997532 34569
Q ss_pred HHHHHHHHhcCCCEEEecc-CCCHHHHHHHHHh----CCCCCccceeeecCCCCCCCC----------------------
Q 010948 243 LRRSRAFADAGADVLFIDA-LASKEEMKAFCEI----SPLVPKMANMLEGGGKTPILN---------------------- 295 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg-~~s~eei~~i~~~----v~~vP~~~N~l~~~g~tP~lt---------------------- 295 (497)
|.||.+..+-|||+|++|. .|+.+++++|++. +|...+..|. +|.++
T Consensus 335 I~r~i~a~apyADLlW~ET~~P~~~qa~~fa~~Ir~~~P~~~LaYN~------SPSFNW~~~~r~q~~~~~~~~G~~~~~ 408 (531)
T PRK06498 335 VLDCITSLQNGADLLWIETEKPHVAQIAGMVNRIREVVPNAKLVYNN------SPSFNWTLNFRQQVYDAWKAEGKDVSA 408 (531)
T ss_pred HHHHHHhhcCcCcEEEecCCCCCHHHHHHHHHHHHHHCCCCeEEecC------CCCcchhhhHHHHHHHHHHHhcccccc
Confidence 9999954489999999997 5788899888865 4543333343 23221
Q ss_pred ---------------------------HHHHHh-cCCCEEeccchHHHHHHHHHHHHHHHH
Q 010948 296 ---------------------------PLELEE-LGFKLVAYPLSLIGVSVRAMQDALTAI 328 (497)
Q Consensus 296 ---------------------------~~eL~e-lGv~~Vsyp~~ll~aa~~Am~~al~~i 328 (497)
..||.+ +||..-...+..+.....+|.+..+..
T Consensus 409 ~~~~~lm~~~~d~~~l~~~~d~~i~~Fq~dla~~~G~~~qfITLag~Ht~als~~~LAk~y 469 (531)
T PRK06498 409 YDRAKLMSAEYDDTELAAEADEKIRTFQADAAREAGIFHHLITLPTYHTAALSTDNLAKGY 469 (531)
T ss_pred cchhhhccccccccccccCCHHHHHHHHHHHHHhCCceEEEeccHhHHHhHHHHHHHHHHH
Confidence 245666 888877777777777776776666664
No 17
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=100.00 E-value=4.6e-36 Score=297.39 Aligned_cols=178 Identities=21% Similarity=0.274 Sum_probs=154.8
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcc-eEeeC
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP-VIGDG 157 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iP-VIaD~ 157 (497)
..||++|++++++++|||||++||++++++|||+++++ .+++++.+|+||++.+|++||++|+++|+++++.| |++|+
T Consensus 2 ~~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vG-ds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~ 80 (254)
T cd06557 2 PDLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVG-DSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADM 80 (254)
T ss_pred hhHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEEC-HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 46999999999999999999999999999999999965 34445679999999999999999999999999999 99999
Q ss_pred CCC-CCC-HHHHHHH-HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH--------------h
Q 010948 158 DNG-YGN-AMNVKRT-VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK--------------E 220 (497)
Q Consensus 158 DtG-YG~-~~~V~rt-Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~--------------~ 220 (497)
++| |++ ++++.++ ++.|+++||+||||||+ +++++||+++++++. .
T Consensus 81 ~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~-----------------~~~~~~I~al~~agipV~gHiGL~pq~~~~ 143 (254)
T cd06557 81 PFGSYQTSPEQALRNAARLMKEAGADAVKLEGG-----------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQ 143 (254)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------------HHHHHHHHHHHHcCCCeeccccccceeeec
Confidence 965 886 7665554 56666699999999997 489999999998862 1
Q ss_pred cCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCcc
Q 010948 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 221 ~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~ 281 (497)
+ .+|++++|||+. .+++|+||++|++||||+||+|++++ +++++++++++ +|+.
T Consensus 144 ~-gg~~~~grt~~~----a~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v~-iP~i 197 (254)
T cd06557 144 L-GGYKVQGKTEEE----AERLLEDALALEEAGAFALVLECVPA-ELAKEITEALS-IPTI 197 (254)
T ss_pred c-CCceeccCCHHH----HHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCC-CCEE
Confidence 2 468888998875 48999999999999999999999986 79999999987 6753
No 18
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=2.5e-35 Score=293.53 Aligned_cols=179 Identities=20% Similarity=0.253 Sum_probs=154.9
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcc-eEee
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP-VIGD 156 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iP-VIaD 156 (497)
..+||++++++++++||||||++||++++++|||+++++ .+++++.+|+||++.+|++||++|+++|+++++.| |++|
T Consensus 4 ~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vG-ds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD 82 (264)
T PRK00311 4 ISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVG-DSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVAD 82 (264)
T ss_pred HHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEEC-HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEe
Confidence 467999999999999999999999999999999999976 34444579999999999999999999999999875 9999
Q ss_pred CCCC-CC-CHHH-HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH--------------
Q 010948 157 GDNG-YG-NAMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK-------------- 219 (497)
Q Consensus 157 ~DtG-YG-~~~~-V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~-------------- 219 (497)
+++| |+ ++++ +.++++.++++||+||||||+ ++++++|+++++++-
T Consensus 83 ~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-----------------~~~~~~I~al~~agIpV~gHiGL~pq~~~ 145 (264)
T PRK00311 83 MPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG-----------------EEVAETIKRLVERGIPVMGHLGLTPQSVN 145 (264)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------------HHHHHHHHHHHHCCCCEeeeecccceeec
Confidence 9965 85 6766 555667777799999999997 378999999998751
Q ss_pred hcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCcc
Q 010948 220 ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 220 ~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~ 281 (497)
.+ .+|++++|||+. .+++|+||++|++||||+||+|++++ +++++++++++ +|+.
T Consensus 146 ~~-gg~~i~grt~~~----a~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l~-iP~i 200 (264)
T PRK00311 146 VL-GGYKVQGRDEEA----AEKLLEDAKALEEAGAFALVLECVPA-ELAKEITEALS-IPTI 200 (264)
T ss_pred cc-CCeeeecCCHHH----HHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCC-CCEE
Confidence 12 368999999985 48999999999999999999999977 89999999987 6753
No 19
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=99.97 E-value=2.1e-30 Score=257.90 Aligned_cols=233 Identities=14% Similarity=0.162 Sum_probs=169.9
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-cceEe
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIG 155 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-iPVIa 155 (497)
-..|+++++++++++||||||+.||++++++|||+|+++ |.++ ..+|+||+..+|++||++|+++|+|++. ..||+
T Consensus 4 ~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm--~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~ 81 (263)
T TIGR00222 4 TLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGM--VVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVT 81 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhH--HhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEe
Confidence 457899999999999999999999999999999999999 4443 5799999999999999999999999987 45778
Q ss_pred eCCCC-CCCHHHHHHHHHHHHH-hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH-------------h
Q 010948 156 DGDNG-YGNAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK-------------E 220 (497)
Q Consensus 156 D~DtG-YG~~~~V~rtVk~l~~-AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~-------------~ 220 (497)
|+|+| |++++.+.+++.++++ +||+||||||+. +++++|++++++.- .
T Consensus 82 DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg~-----------------~~~~~i~~l~~~gIpV~gHiGltPq~a~ 144 (263)
T TIGR00222 82 DLPFMSYATPEQALKNAARVMQETGANAVKLEGGE-----------------WLVETVQMLTERGVPVVGHLGLTPQSVN 144 (263)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCcH-----------------hHHHHHHHHHHCCCCEEEecCCCceeEe
Confidence 99996 9888888888877665 999999999972 34555555554310 0
Q ss_pred cCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCC--CCCHHH
Q 010948 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP--ILNPLE 298 (497)
Q Consensus 221 ~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP--~lt~~e 298 (497)
...+|++++||++.+ +++|+||++|++||||+||+|+++ .+.+++|+++++ +| +|=+..|..+. -+=..|
T Consensus 145 ~~ggy~~qgrt~~~a----~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l~-iP--~iGIGaG~~~dGQvlV~~D 216 (263)
T TIGR00222 145 ILGGYKVQGKDEEAA----KKLLEDALALEEAGAQLLVLECVP-VELAAKITEALA-IP--VIGIGAGNVCDGQILVMHD 216 (263)
T ss_pred ecCCeeecCCCHHHH----HHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhCC-CC--EEeeccCCCCCceeeeHHh
Confidence 013577777777643 899999999999999999999999 589999999987 55 34332111111 122444
Q ss_pred HHhcCCC----EEeccchHHHHHHHHHHHHHHHHHcCCCCCCC
Q 010948 299 LEELGFK----LVAYPLSLIGVSVRAMQDALTAIKGGRIPSPG 337 (497)
Q Consensus 299 L~elGv~----~Vsyp~~ll~aa~~Am~~al~~i~~g~~~~~~ 337 (497)
|--+.-. .+--=..+......|+++..++.++|.+|.++
T Consensus 217 ~lG~~~~~~pkf~k~y~~~~~~~~~a~~~y~~~V~~g~fP~~~ 259 (263)
T TIGR00222 217 ALGITVGHIPKFAKNYLAETETIRAAVRQYMAEVRSGVFPGEE 259 (263)
T ss_pred hcCCCCCCCCCchHHHhhHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 4433211 11100112334556667777777778776543
No 20
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=99.97 E-value=1.7e-28 Score=250.06 Aligned_cols=235 Identities=18% Similarity=0.227 Sum_probs=172.8
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe-
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG- 155 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa- 155 (497)
..+|+++++++++|+|++|||+.||++++++|+|+|+|+ |.++ .++||||+..+|++||++|++.|+|++..|+++
T Consensus 24 i~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgm--v~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVa 101 (332)
T PLN02424 24 LRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAM--VVHGHDTTLPITLDEMLVHCRAVARGANRPLLVG 101 (332)
T ss_pred HHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHH--HhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEe
Confidence 568999999999999999999999999999999999999 5554 479999999999999999999999999988776
Q ss_pred eCCCC-CC-CHHHHHHHHHHHH-HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeE----EE
Q 010948 156 DGDNG-YG-NAMNVKRTVKGYI-KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV----IV 228 (497)
Q Consensus 156 D~DtG-YG-~~~~V~rtVk~l~-~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfv----Ii 228 (497)
|+|+| |+ +++.+.+++.+++ ++||+||||||+. .+.++.|++++++ |.+++ ++
T Consensus 102 DmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~----------------~~~~~~I~~l~~~----GIPV~gHiGLt 161 (332)
T PLN02424 102 DLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS----------------PSRVTAAKAIVEA----GIAVMGHVGLT 161 (332)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc----------------HHHHHHHHHHHHc----CCCEEEeeccc
Confidence 99999 97 6888888887774 6999999999972 2345555555533 45566 66
Q ss_pred Eeccchh---------cccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCC-CCCCHHH
Q 010948 229 ARTDSRQ---------ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKT-PILNPLE 298 (497)
Q Consensus 229 ARTDA~~---------~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~t-P~lt~~e 298 (497)
.|++... .+..++.|+||++|++||||+||+|++++. .+++|++.++ +|++ -+=.+++.- --|=..|
T Consensus 162 PQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l~-IPtI-GIGAG~~cDGQVLV~~D 238 (332)
T PLN02424 162 PQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP-VAAAITSALQ-IPTI-GIGAGPFCSGQVLVYHD 238 (332)
T ss_pred ceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhCC-CCEE-eecCCCCCCceeEeHHh
Confidence 6666531 123578999999999999999999999985 9999999987 6763 221111100 0122334
Q ss_pred HHhcCCC--EE-eccch------HHHHHHHHHHHHHHHHHcCCCCCCC
Q 010948 299 LEELGFK--LV-AYPLS------LIGVSVRAMQDALTAIKGGRIPSPG 337 (497)
Q Consensus 299 L~elGv~--~V-syp~~------ll~aa~~Am~~al~~i~~g~~~~~~ 337 (497)
+--+.-. .- ..|-. +......|+++..++.++|.+|..+
T Consensus 239 ~LG~~~~p~h~~~~PkFvk~y~~~~~~~~~A~~~y~~eVk~g~FP~~e 286 (332)
T PLN02424 239 LLGMMQHPHHAKVTPKFCKQYAKVGEVINKALAEYKEEVENGAFPGPA 286 (332)
T ss_pred hcCCCCCccccCCCCchHHHHHhHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 3322100 00 01221 3334566777777778888887554
No 21
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=99.93 E-value=4.4e-26 Score=226.43 Aligned_cols=180 Identities=19% Similarity=0.294 Sum_probs=134.9
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-cceEe
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIG 155 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-iPVIa 155 (497)
..+|+++.+++++|++.+|||+.+|++++++|+|.|+++ |+++. .+|++++..+|++||++|++.++|++. ..|++
T Consensus 5 ~~~l~~~k~~g~ki~~lTaYD~~~A~~~d~agvD~iLVGDSlgmv--~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~ 82 (261)
T PF02548_consen 5 VSDLRKMKQKGEKIVMLTAYDYPSARIADEAGVDIILVGDSLGMV--VLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVA 82 (261)
T ss_dssp HHHHHHHHHHT--EEEEE--SHHHHHHHHHTT-SEEEE-TTHHHH--TT--SSSTT--HHHHHHHHHHHHHH-TSSEEEE
T ss_pred HHHHHHHHhCCCcEEEEecccHHHHHHHHHcCCCEEEeCCcHHHh--eeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEe
Confidence 467999999999999999999999999999999999999 88875 799999999999999999999999985 88999
Q ss_pred eCCCC-C-CCHHHHHHHHHHHHH-hCccEEEecCCC------------CCCCCCCCCCccccCHHHHHHHHHHHHHHHHh
Q 010948 156 DGDNG-Y-GNAMNVKRTVKGYIK-AGFAGIILEDQV------------SPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (497)
Q Consensus 156 D~DtG-Y-G~~~~V~rtVk~l~~-AGaAGI~IEDq~------------~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~ 220 (497)
|+|+| | .+++.+.+++.+|++ +||++|+||+.. ..+.|||.+ |+|+... +
T Consensus 83 DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~~GIPV~gHiG---LtPQ~~~--~---------- 147 (261)
T PF02548_consen 83 DMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVDAGIPVMGHIG---LTPQSVH--Q---------- 147 (261)
T ss_dssp E--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHHTT--EEEEEE---S-GGGHH--H----------
T ss_pred cCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHHCCCcEEEEec---Cchhhee--c----------
Confidence 99999 8 577777777766665 999999999874 256778876 6665411 1
Q ss_pred cCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCcc
Q 010948 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 221 ~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~ 281 (497)
+| +|.+++||...+ .+.++.|+++++|||++|++|+++. +..+.|+++++ +|++
T Consensus 148 ~G-Gyr~qGk~~~~a----~~l~~~A~ale~AGaf~ivlE~vp~-~la~~It~~l~-IPtI 201 (261)
T PF02548_consen 148 LG-GYRVQGKTAEEA----EKLLEDAKALEEAGAFAIVLECVPA-ELAKAITEALS-IPTI 201 (261)
T ss_dssp HT-SS--CSTSHHHH----HHHHHHHHHHHHHT-SEEEEESBBH-HHHHHHHHHSS-S-EE
T ss_pred cC-CceEEecCHHHH----HHHHHHHHHHHHcCccEEeeecCHH-HHHHHHHHhCC-CCEE
Confidence 24 899999997654 6789999999999999999999986 68888889887 6764
No 22
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=99.92 E-value=2.7e-24 Score=212.26 Aligned_cols=233 Identities=18% Similarity=0.235 Sum_probs=175.1
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-cceEe
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIG 155 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-iPVIa 155 (497)
..+|+++.+.+++++|++|||+.+|++++++|+|.|+++ |.++. .+|++++..+|+++|++|.+.++|++. ..|++
T Consensus 4 ~~~~~~~k~~~~ki~~lTAYD~~~A~~~d~agvd~lLVGDSlgmv--v~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv~ 81 (268)
T COG0413 4 TRTLIKMKQEGEKIVMLTAYDYPFAKLFDQAGVDVLLVGDSLGMV--VLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVVA 81 (268)
T ss_pred HHHHHHHHhcCCceEEEeccccHHHhhhhhcCCcEEEEeccHHHH--HcCCCCcceecHHHHHHHHHHHHhcCCCeeEEe
Confidence 467899999999999999999999999999999999999 88875 799999999999999999999999884 88999
Q ss_pred eCCCC-CC-CHHHHHHHH-HHHHHhCccEEEecCCC------------CCCCCCCCCCccccCHHHHHHHHHHHHHHHHh
Q 010948 156 DGDNG-YG-NAMNVKRTV-KGYIKAGFAGIILEDQV------------SPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (497)
Q Consensus 156 D~DtG-YG-~~~~V~rtV-k~l~~AGaAGI~IEDq~------------~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~ 220 (497)
|+|+| |. ++++..+++ +.|.++||++|+||.+. ..+.|||.+ |+|+.. ..
T Consensus 82 DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG~~~~~~i~~L~~~gIPV~gHiG---LtPQ~v--~~---------- 146 (268)
T COG0413 82 DLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGGEEMAETIKRLTERGIPVMGHIG---LTPQSV--NW---------- 146 (268)
T ss_pred CCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHcCCceEEEec---CChhhh--hc----------
Confidence 99999 87 677666555 44445999999999983 277899988 777752 22
Q ss_pred cCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCC-CCCHHHH
Q 010948 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-ILNPLEL 299 (497)
Q Consensus 221 ~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP-~lt~~eL 299 (497)
+ .+|.+++||+..+ ++.++.|++.++|||++|++|+++. +..++|++.++ +|++ -+=++++.-- .|=.+|+
T Consensus 147 ~-GGykvqGr~~~~a----~~l~~dA~ale~AGaf~ivlE~Vp~-~lA~~IT~~ls-iPtI-GIGAG~~cDGQvLV~~D~ 218 (268)
T COG0413 147 L-GGYKVQGRTEESA----EKLLEDAKALEEAGAFALVLECVPA-ELAKEITEKLS-IPTI-GIGAGPGCDGQVLVMHDM 218 (268)
T ss_pred c-CCeeeecCCHHHH----HHHHHHHHHHHhcCceEEEEeccHH-HHHHHHHhcCC-CCEE-eecCCCCCCceEEEeeec
Confidence 2 4899999998754 6789999999999999999999986 68888888876 5642 2211111000 0111222
Q ss_pred HhcCCCEEeccc------hHHHHHHHHHHHHHHHHHcCCCCCCC
Q 010948 300 EELGFKLVAYPL------SLIGVSVRAMQDALTAIKGGRIPSPG 337 (497)
Q Consensus 300 ~elGv~~Vsyp~------~ll~aa~~Am~~al~~i~~g~~~~~~ 337 (497)
+|...=-.|- .+-.....|+++...+.++|.+|...
T Consensus 219 --lGl~~~~~PkFvK~y~~l~~~i~~A~~~Y~~eV~~g~FP~~~ 260 (268)
T COG0413 219 --LGLSGGHKPKFVKRYADLGEEIRAAVKQYAAEVKSGTFPEEE 260 (268)
T ss_pred --cccCCCCCCcHHHHHhcchHHHHHHHHHHHHHHhcCCCCCcc
Confidence 1221100111 12334566777888888888877554
No 23
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=99.78 E-value=3.2e-18 Score=166.95 Aligned_cols=180 Identities=17% Similarity=0.208 Sum_probs=148.1
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCc-ceE
Q 010948 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSI-PVI 154 (497)
Q Consensus 77 ~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~i-PVI 154 (497)
...+||+.+..++++.|.++||+.+|++...+|+|.++++ |++|. ++|+..+..++++||++|++.++|+..- .|+
T Consensus 26 Ti~~lRqk~~~g~p~t~~TAYD~~~a~~~~~ag~dv~LVGDSl~Mt--~~GhdtTlpiSl~e~~yH~~sV~Rga~~~llv 103 (306)
T KOG2949|consen 26 TITTLRQKHRAGEPITMVTAYDYPSAVHFDTAGIDVCLVGDSLAMT--VHGHDTTLPISLEEMLYHCRSVARGAKRPLLV 103 (306)
T ss_pred eHHHHHHHHhcCCceEEEEecccchhhhhhhcCCcEEEeccchhhe--eeccccceeeeHHHHHHHHHHHHccCCCceEE
Confidence 3578999999999999999999999999999999999999 88874 7999999999999999999999999864 478
Q ss_pred eeCCCC-CCC--HHHHHHHHHHHHHhCccEEEecCCCC-------------CCCCCCCCCccccCHHHHHHHHHHHHHHH
Q 010948 155 GDGDNG-YGN--AMNVKRTVKGYIKAGFAGIILEDQVS-------------PKGCGHTRGRKVVSREEAVMRIKAAVDAR 218 (497)
Q Consensus 155 aD~DtG-YG~--~~~V~rtVk~l~~AGaAGI~IEDq~~-------------pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar 218 (497)
+|+++| |-+ ...+..+++-|.++|+..|+||.+.. .+..||.+ |.|+..
T Consensus 104 ~DlPFgtyeS~~sda~knAv~vmk~~g~~~vK~EgGs~~~~~~~~~l~ergipV~gHvG---LTPQ~v------------ 168 (306)
T KOG2949|consen 104 GDLPFGTYESSWSDAVKNAVRVMKEGGMDAVKLEGGSNSRITAAKRLVERGIPVMGHVG---LTPQAV------------ 168 (306)
T ss_pred EecCcccccccHHHHHHHHHHHHHhcCCceEEEccCcHHHHHHHHHHHHcCCceeeecc---CChhhh------------
Confidence 999999 733 35677777888889999999999852 44566665 555421
Q ss_pred HhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCc
Q 010948 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPK 280 (497)
Q Consensus 219 ~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~ 280 (497)
..+| +|.+++|.-+.+ .+.+|-|.+++++||+.|++||++. ...+.++..++ +|+
T Consensus 169 ~~lG-Gyk~QGr~~~~a----~~l~EtAmqLqk~Gc~svvlECvP~-~~A~~iTs~ls-iPT 223 (306)
T KOG2949|consen 169 SVLG-GYKPQGRNIASA----VKLVETAMQLQKAGCFSVVLECVPP-PVAAAITSALS-IPT 223 (306)
T ss_pred hhcc-CcCccchhHHHH----HHHHHHHHHHHhcccceEeeecCCh-HHHHHHHhccC-Ccc
Confidence 1234 799999876543 6778999999999999999999985 46677777775 565
No 24
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.05 E-value=0.00046 Score=67.18 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh--cccHHH
Q 010948 164 AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ--ALSLEE 241 (497)
Q Consensus 164 ~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~--~~~lde 241 (497)
.......+++..++||++|.+.... +. .+.++..+.+++++++.++.|..++|....+... .....+
T Consensus 75 ~~~~~~~v~~a~~~Ga~~v~~~~~~-----~~------~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~ 143 (235)
T cd00958 75 DKVLVASVEDAVRLGADAVGVTVYV-----GS------EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPD 143 (235)
T ss_pred chhhhcCHHHHHHCCCCEEEEEEec-----CC------chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHH
Confidence 3445556888899999999887753 11 1246778888888887777777888755543211 001246
Q ss_pred HHHH-HHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCC-----CCHHHHHhcCCCEEeccchHHH
Q 010948 242 SLRR-SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPI-----LNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 242 aIeR-AkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~-----lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
.+++ ++.+.++|||.|.+....+.+.++++++..+ +| + +..++-+... -...++.+.|++.|+++..++.
T Consensus 144 ~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~~-~p--v-v~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 144 LIAYAARIGAELGADIVKTKYTGDAESFKEVVEGCP-VP--V-VIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred HHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhcCC-CC--E-EEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 6777 8999999999999976667889999998765 45 3 3333212111 1267889999999999988874
Q ss_pred H
Q 010948 316 V 316 (497)
Q Consensus 316 a 316 (497)
.
T Consensus 220 ~ 220 (235)
T cd00958 220 R 220 (235)
T ss_pred C
Confidence 4
No 25
>PRK08185 hypothetical protein; Provisional
Probab=98.00 E-value=0.0023 Score=65.50 Aligned_cols=216 Identities=16% Similarity=0.192 Sum_probs=143.8
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceE
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVI 154 (497)
+-|.+..+.+-.+.+.|+||.-+++. +|+.+.+.|+..+-+.. ...| .++...++.+++..++||.
T Consensus 3 ~~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~-~~~~---------~~~~~~~~~~a~~~~vPV~ 72 (283)
T PRK08185 3 ELLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNEL-DFLG---------DNFFAYVRERAKRSPVPFV 72 (283)
T ss_pred HHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchh-hhcc---------HHHHHHHHHHHHHCCCCEE
Confidence 34555566666788999999999865 46679999987754432 1112 2377778888888899999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCe----EEEEe
Q 010948 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI----VIVAR 230 (497)
Q Consensus 155 aD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~df----vIiAR 230 (497)
+=.|+|. + .+.+++.+++|...|.|... | .|.+|-+++-+.+++-.+..|..+ =.++-
T Consensus 73 lHLDHg~-~----~e~i~~ai~~Gf~SVM~D~S-------~------l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~ 134 (283)
T PRK08185 73 IHLDHGA-T----IEDVMRAIRCGFTSVMIDGS-------L------LPYEENVALTKEVVELAHKVGVSVEGELGTIGN 134 (283)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccC
Confidence 9999995 3 33455667899999999543 3 367888888777776665433221 11111
Q ss_pred ccchhcccHHH----HHHHHHHHHhc-CCCEEEe-----ccCC--------CHHHHHHHHHhCCCCCccceeeecCCCCC
Q 010948 231 TDSRQALSLEE----SLRRSRAFADA-GADVLFI-----DALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTP 292 (497)
Q Consensus 231 TDA~~~~~lde----aIeRAkAY~eA-GAD~IfI-----eg~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP 292 (497)
.+.....+.++ -.+.|+.|.+. |+|++-+ +++- +.+.++++.+.++ +|+ ++.|+..+|
T Consensus 135 ~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~-iPL---VlHGgsg~~ 210 (283)
T PRK08185 135 TGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD-IPL---VLHGGSANP 210 (283)
T ss_pred cccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC-CCE---EEECCCCCC
Confidence 10000000001 23556777766 9999999 5541 4678888888774 665 455533344
Q ss_pred CCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 293 ILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 293 ~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
.-.+.+.-++|++-|=+..-+..+.++++++.+.
T Consensus 211 ~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 244 (283)
T PRK08185 211 DAEIAESVQLGVGKINISSDMKYAFFKKVREILS 244 (283)
T ss_pred HHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHH
Confidence 3334555678999999999999999999988764
No 26
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=98.00 E-value=0.00019 Score=72.63 Aligned_cols=163 Identities=22% Similarity=0.263 Sum_probs=94.1
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCC-CCCCHH----HHHHHHHHHHhhcC-cc
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT-GFISYG----EMVDQGQLITQAVS-IP 152 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~-g~ltld----Eml~~~r~I~ra~~-iP 152 (497)
++||+.++++++++..++--++||+.+|+.|.|-|.+=..+-- -+.|.+.. +++++. -+++.++.|.-.+. .|
T Consensus 5 ~~l~~~i~~~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrf-R~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tP 83 (268)
T PF09370_consen 5 DRLRAQIKAGKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRF-RMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTP 83 (268)
T ss_dssp HHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHH-HHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-
T ss_pred HHHHHHHhCCCceEEEeeccchhhHHHHhcCCCEEEEecchhH-hhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCC
Confidence 5799999999999999999999999999999999987644432 23466663 455553 34555677766554 88
Q ss_pred eEeeCCCCCCCH-HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHH----HHHHHHHHHHHHHhcCCCeEE
Q 010948 153 VIGDGDNGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREE----AVMRIKAAVDARKESGSDIVI 227 (497)
Q Consensus 153 VIaD~DtGYG~~-~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee----~~~KIrAAv~Ar~~~g~dfvI 227 (497)
|++=.=. .+| .++.+-.+++.+.|.+||+= +| ..|+.+|+--...|| +-.-|..++.|++ .|++-
T Consensus 84 ViaGv~a--tDP~~~~~~fl~~lk~~Gf~GV~N----fP-TvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~---~gl~T 153 (268)
T PF09370_consen 84 VIAGVCA--TDPFRDMDRFLDELKELGFSGVQN----FP-TVGLIDGQFRQNLEETGMGYDREVEMIRKAHE---KGLFT 153 (268)
T ss_dssp EEEEE-T--T-TT--HHHHHHHHHHHT-SEEEE-----S--GGG--HHHHHHHHHTT--HHHHHHHHHHHHH---TT-EE
T ss_pred EEEEecC--cCCCCcHHHHHHHHHHhCCceEEE----CC-cceeeccHHHHHHHhcCCCHHHHHHHHHHHHH---CCCee
Confidence 8873321 144 47888889999999999953 33 235555421111111 2333444455554 36665
Q ss_pred EEeccchhcccHHHHHHHHHHHHhcCCCEEEecc
Q 010948 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (497)
Q Consensus 228 iARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg 261 (497)
++=.-. -+.|+++.+||||+|+++.
T Consensus 154 ~~yvf~---------~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 154 TAYVFN---------EEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp --EE-S---------HHHHHHHHHHT-SEEEEE-
T ss_pred eeeecC---------HHHHHHHHHcCCCEEEecC
Confidence 554322 2668888999999999984
No 27
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.94 E-value=0.0038 Score=63.74 Aligned_cols=212 Identities=17% Similarity=0.182 Sum_probs=144.6
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-cce
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPV 153 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-iPV 153 (497)
+-|+...+.+-.+.+.|+||.-+++. +|+.+.+.|+..+-... .+.. .++.+...++.+++..+ +||
T Consensus 6 ~~l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~----~~~~----~~~~~~~~~~~~a~~~~~vpv 77 (282)
T TIGR01859 6 EILQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAI----KYMG----GYKMAVAMVKTLIERMSIVPV 77 (282)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchh----hccC----cHHHHHHHHHHHHHHCCCCeE
Confidence 45666666666788999999998865 46679999997643321 1110 15778888899998888 999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccc
Q 010948 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS 233 (497)
Q Consensus 154 IaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA 233 (497)
..-.|+|. + .+.+++.+++|+..|+|... | .|.+|.+++.+.+++-.+..|. -|-+....
T Consensus 78 ~lhlDH~~-~----~e~i~~ai~~Gf~sVmid~s-------~------l~~~eni~~t~~v~~~a~~~gv--~Ve~ElG~ 137 (282)
T TIGR01859 78 ALHLDHGS-S----YESCIKAIKAGFSSVMIDGS-------H------LPFEENLALTKKVVEIAHAKGV--SVEAELGT 137 (282)
T ss_pred EEECCCCC-C----HHHHHHHHHcCCCEEEECCC-------C------CCHHHHHHHHHHHHHHHHHcCC--EEEEeeCC
Confidence 99999994 3 34566667899999999554 2 2667788777777766665442 22222211
Q ss_pred h------------hcccHHHHHHHHHHHHh-cCCCEEEe-----ccC------CCHHHHHHHHHhCCCCCccceeeecCC
Q 010948 234 R------------QALSLEESLRRSRAFAD-AGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGG 289 (497)
Q Consensus 234 ~------------~~~~ldeaIeRAkAY~e-AGAD~IfI-----eg~------~s~eei~~i~~~v~~vP~~~N~l~~~g 289 (497)
. ...+ .+.++.+.+ .|+|.|-+ ++. -+.+.++++++.++ +|+. +.++.
T Consensus 138 ~gg~ed~~~g~~~~~t~----~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~-iPlv---~hGgS 209 (282)
T TIGR01859 138 LGGIEDGVDEKEAELAD----PDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN-IPLV---LHGAS 209 (282)
T ss_pred CcCccccccccccccCC----HHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC-CCEE---EECCC
Confidence 1 1123 345566665 89999985 211 24688899988875 5642 33322
Q ss_pred CCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 290 KTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 290 ~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
..|.-.+.++-+.|+.-|-+...+..+...++++.+.
T Consensus 210 Gi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01859 210 GIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLT 246 (282)
T ss_pred CCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHH
Confidence 3443456667889999999999999999999888764
No 28
>PRK06801 hypothetical protein; Provisional
Probab=97.92 E-value=0.0037 Score=64.04 Aligned_cols=217 Identities=17% Similarity=0.216 Sum_probs=146.3
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceE
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVI 154 (497)
+-|....+.+-.+.+.|+||.-+++. +|+.+.+.|+-.+-+.. . ..+++.+...++.+++..++||.
T Consensus 8 ~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~----~-----~~~~~~~~~~~~~~a~~~~vpV~ 78 (286)
T PRK06801 8 NGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHF----K-----YISLESLVEAVKFEAARHDIPVV 78 (286)
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchh----h-----cCCHHHHHHHHHHHHHHCCCCEE
Confidence 44555555666688899999999865 46678999987654321 1 25578899999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCe----EEEEe
Q 010948 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI----VIVAR 230 (497)
Q Consensus 155 aD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~df----vIiAR 230 (497)
+=.|+|. + ...+++.+++|+..|.+ |.. | .|.+|-+++-+.+++-++..|.+. =-++.
T Consensus 79 lHlDH~~-~----~e~i~~Ai~~GftSVm~-D~S------~------l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg 140 (286)
T PRK06801 79 LNLDHGL-H----FEAVVRALRLGFSSVMF-DGS------T------LEYEENVRQTREVVKMCHAVGVSVEAELGAVGG 140 (286)
T ss_pred EECCCCC-C----HHHHHHHHHhCCcEEEE-cCC------C------CCHHHHHHHHHHHHHHHHHcCCeEEeecCcccC
Confidence 9999985 3 24456667899999999 432 2 366788888888877766544321 01222
Q ss_pred ccch---hccc--HHHHHHHHHHHH-hcCCCEEEec-----c------CCCHHHHHHHHHhCCCCCccceeeecCCCCCC
Q 010948 231 TDSR---QALS--LEESLRRSRAFA-DAGADVLFID-----A------LASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (497)
Q Consensus 231 TDA~---~~~~--ldeaIeRAkAY~-eAGAD~IfIe-----g------~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (497)
.|.. ...+ .---.+.|+.|. +.|+|++-+. + ..+.+.++++.+.++ +|+ ++.|+...|.
T Consensus 141 ~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~-~PL---VlHGGSgi~~ 216 (286)
T PRK06801 141 DEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTG-LPL---VLHGGSGISD 216 (286)
T ss_pred CCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcC-CCE---EEECCCCCCH
Confidence 2210 0000 000125566666 7999999871 1 125678888888775 564 4555333444
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 294 lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
-.+.++-++|++-|-+...+..+...++++.+.
T Consensus 217 e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~~~~ 249 (286)
T PRK06801 217 ADFRRAIELGIHKINFYTGMSQAALAAVEQRMT 249 (286)
T ss_pred HHHHHHHHcCCcEEEehhHHHHHHHHHHHHHHH
Confidence 455677788999999999999999998888764
No 29
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.85 E-value=0.00061 Score=67.89 Aligned_cols=134 Identities=16% Similarity=0.174 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh-cccHHHHHHH
Q 010948 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-ALSLEESLRR 245 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~-~~~ldeaIeR 245 (497)
....+++.++.||++|++.+.. |. .+..++++.++++++..++.|..++|+.-.|... ...-.+.+++
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~-----g~------~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~ 160 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNV-----GS------DTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAH 160 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEec-----CC------chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHH
Confidence 4566889999999999999874 21 1235677888888888776677777754332211 1111356777
Q ss_pred -HHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCC-CC-----CCHHHHHhcCCCEEeccchHHHH
Q 010948 246 -SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKT-PI-----LNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 246 -AkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~t-P~-----lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
++.+.++|||.|......+.+.++++++..+ +|.. . .+ |-+ .. -..+++.+.|+..++.+..++.+
T Consensus 161 ~~~~a~~~GADyikt~~~~~~~~l~~~~~~~~-iPVv--a-~G-Gi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 161 AARLGAELGADIVKTPYTGDIDSFRDVVKGCP-APVV--V-AG-GPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHHHCCCEEeccCCCCHHHHHHHHHhCC-CcEE--E-ec-CCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 6899999999999987667789999988654 4542 2 23 322 11 12577779999999998887765
No 30
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.85 E-value=0.0037 Score=63.27 Aligned_cols=201 Identities=18% Similarity=0.244 Sum_probs=120.7
Q ss_pred eeecccCCh--HHHHHHHHhCCcEEEecchhhhh-----------------hhcccCCCCCCCHHHHHHHHHHHHhhcCc
Q 010948 91 HQGPACFDA--LSAKLVEKSGFSFCFTSGFSISA-----------------ARLALPDTGFISYGEMVDQGQLITQAVSI 151 (497)
Q Consensus 91 iv~p~ayDa--lSAriae~aGfdAI~vSG~avSa-----------------s~lG~PD~g~ltldEml~~~r~I~ra~~i 151 (497)
+..||.+|. .-.+.+.+.|+.++.+.+..... ++.|++.. ..+..+.+.+...+..+.
T Consensus 15 ~~aag~~~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~---g~~~~~~~~~~~~~~~~~ 91 (300)
T TIGR01037 15 ILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNP---GVEAFLEELKPVREEFPT 91 (300)
T ss_pred EeCCcCCCCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCc---CHHHHHHHHHHHhccCCC
Confidence 444555543 44555667799988885433321 12344442 355666666555555568
Q ss_pred ceEeeCCCCCC-CHHHHHHHHHHHHHhC--ccEEEecCCCCCCCCCCCC--Ccc-ccCHHHHHHHHHHHHHHHHhcCCCe
Q 010948 152 PVIGDGDNGYG-NAMNVKRTVKGYIKAG--FAGIILEDQVSPKGCGHTR--GRK-VVSREEAVMRIKAAVDARKESGSDI 225 (497)
Q Consensus 152 PVIaD~DtGYG-~~~~V~rtVk~l~~AG--aAGI~IEDq~~pKrCGH~~--gk~-lvp~ee~~~KIrAAv~Ar~~~g~df 225 (497)
||++-+ +| ++....+.++.++++| +++|-|-=. |.|.. |.. .-..+...+-+++++++. ++
T Consensus 92 pl~~qi---~g~~~~~~~~~a~~~~~~~~~~d~ielN~~-----cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-----~~ 158 (300)
T TIGR01037 92 PLIASV---YGSSVEEFAEVAEKLEKAPPYVDAYELNLS-----CPHVKGGGIAIGQDPELSADVVKAVKDKT-----DV 158 (300)
T ss_pred cEEEEe---ecCCHHHHHHHHHHHHhccCccCEEEEECC-----CCCCCCCccccccCHHHHHHHHHHHHHhc-----CC
Confidence 998877 34 5778889999998874 999988633 33332 112 224455555555555442 45
Q ss_pred EEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec----cC----C-------------C--------HHHHHHHHHhCC
Q 010948 226 VIVARTDSRQALSLEESLRRSRAFADAGADVLFID----AL----A-------------S--------KEEMKAFCEISP 276 (497)
Q Consensus 226 vIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe----g~----~-------------s--------~eei~~i~~~v~ 276 (497)
-|..|.-. .+++.++-+++++++|+|+|.+. +. . + .+.+.++.+.++
T Consensus 159 pv~vKi~~----~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 234 (300)
T TIGR01037 159 PVFAKLSP----NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD 234 (300)
T ss_pred CEEEECCC----ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC
Confidence 66677632 45788888999999999999874 21 0 0 145566666654
Q ss_pred CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 277 LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 277 ~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
+|+..| ||-.-.-+..++-+.|+..|..+..++.-
T Consensus 235 -ipvi~~----GGI~s~~da~~~l~~GAd~V~igr~~l~~ 269 (300)
T TIGR01037 235 -IPIIGV----GGITSFEDALEFLMAGASAVQVGTAVYYR 269 (300)
T ss_pred -CCEEEE----CCCCCHHHHHHHHHcCCCceeecHHHhcC
Confidence 565432 34221123455556799988887776543
No 31
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.80 E-value=0.0022 Score=65.71 Aligned_cols=187 Identities=22% Similarity=0.178 Sum_probs=120.7
Q ss_pred HHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec---chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEee
Q 010948 80 SLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (497)
Q Consensus 80 ~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vS---G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD 156 (497)
-|-++++.| +.+.+-++-.|+++|++|.=+++.= -+-+- . .|.+..-.=..+++.|.+++++|||+=
T Consensus 4 ~~a~~~kgg---vimdv~~~eqa~iae~aga~avm~le~~p~d~r------~-~ggv~R~~~p~~I~~I~~~V~iPVig~ 73 (287)
T TIGR00343 4 GLAQMLKGG---VIMDVVNPEQAKIAEEAGAVAVMALERVPADIR------A-SGGVARMSDPKMIKEIMDAVSIPVMAK 73 (287)
T ss_pred hHHHHhcCC---eEEEeCCHHHHHHHHHcCceEEEeeccCchhhH------h-cCCeeecCCHHHHHHHHHhCCCCEEEE
Confidence 467777655 4567789999999999998777652 00110 0 122333333557788989999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhc
Q 010948 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA 236 (497)
Q Consensus 157 ~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~ 236 (497)
.--|| ..-++.++++|++-| |.. ..+.|.+++...++.- .+..|+-=+|
T Consensus 74 ~kigh------~~Ea~~L~~~GvDiI---DeT----------e~lrPade~~~~~K~~------f~vpfmad~~------ 122 (287)
T TIGR00343 74 VRIGH------FVEAQILEALGVDYI---DES----------EVLTPADWTFHIDKKK------FKVPFVCGAR------ 122 (287)
T ss_pred eeccH------HHHHHHHHHcCCCEE---Ecc----------CCCCcHHHHHHHHHHH------cCCCEEccCC------
Confidence 88888 666788999999999 532 2355677777776532 2223332222
Q ss_pred ccHHHHHHHHHHHHhcCCCEEEecc----------------------------------------CCCHHHHHHHHHhCC
Q 010948 237 LSLEESLRRSRAFADAGADVLFIDA----------------------------------------LASKEEMKAFCEISP 276 (497)
Q Consensus 237 ~~ldeaIeRAkAY~eAGAD~IfIeg----------------------------------------~~s~eei~~i~~~v~ 276 (497)
.++|+++|. ++|||+|=--+ -...+.++++++...
T Consensus 123 -~l~EAlrai----~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~ 197 (287)
T TIGR00343 123 -DLGEALRRI----NEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGK 197 (287)
T ss_pred -CHHHHHHHH----HCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCC
Confidence 367777775 48999986441 023355566666543
Q ss_pred CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 277 LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 277 ~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
+|+ +|.-+++-.|| -+...+.++|+.-|..+...+.
T Consensus 198 -iPV-V~fAiGGI~TP-edAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 198 -LPV-VNFAAGGVATP-ADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred -CCE-EEeccCCCCCH-HHHHHHHHcCCCEEEEhHHhhc
Confidence 563 45556522233 2457788899999999988864
No 32
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.79 E-value=0.0043 Score=62.14 Aligned_cols=206 Identities=17% Similarity=0.140 Sum_probs=120.6
Q ss_pred ceeecccC---ChHHHHHHHHhCCcEEEecchhhhhhhcccCC------------------------CCCCCHHHHHHHH
Q 010948 90 VHQGPACF---DALSAKLVEKSGFSFCFTSGFSISAARLALPD------------------------TGFISYGEMVDQG 142 (497)
Q Consensus 90 ~iv~p~ay---DalSAriae~aGfdAI~vSG~avSas~lG~PD------------------------~g~ltldEml~~~ 142 (497)
|+.+.... +.--.+.+..+||-++.+.+...- ...|.|- ......++++..+
T Consensus 11 Pv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~-~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i 89 (289)
T cd02810 11 PFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLH-PRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDI 89 (289)
T ss_pred CCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCC-CCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHH
Confidence 44444333 344455566778888887765432 1223321 1123467777777
Q ss_pred HHHHhh-cCcceEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCC-ccc-cCHHHHHHHHHHHHHHH
Q 010948 143 QLITQA-VSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRG-RKV-VSREEAVMRIKAAVDAR 218 (497)
Q Consensus 143 r~I~ra-~~iPVIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~g-k~l-vp~ee~~~KIrAAv~Ar 218 (497)
+...+. .+.||++-+ .| ++....+.++.++++|+++|-|-=. |.|... +.+ ...+...+-|++++++.
T Consensus 90 ~~~~~~~~~~pvi~si---~g~~~~~~~~~a~~~~~~G~d~ielN~~-----cP~~~~~~~~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 90 AKAKKEFPGQPLIASV---GGSSKEDYVELARKIERAGAKALELNLS-----CPNVGGGRQLGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred HHHHhccCCCeEEEEe---ccCCHHHHHHHHHHHHHhCCCEEEEEcC-----CCCCCCCcccccCHHHHHHHHHHHHHcc
Confidence 766555 578998875 23 5678889999999999999988543 544332 222 23344444455554432
Q ss_pred HhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCC-----------------------------CHHHHH
Q 010948 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA-----------------------------SKEEMK 269 (497)
Q Consensus 219 ~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~-----------------------------s~eei~ 269 (497)
++-|..|.-. ..+.++.++-+++..++|||.|.+.+.. ..+.++
T Consensus 162 -----~~pv~vKl~~--~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~ 234 (289)
T cd02810 162 -----DIPLLVKLSP--YFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVA 234 (289)
T ss_pred -----CCCEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHH
Confidence 3444444322 1245788999999999999999986321 123456
Q ss_pred HHHHhCC-CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 270 AFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 270 ~i~~~v~-~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
++.+.++ .+|+. ..+|-+-.-+..++-++|+..|..+..++.
T Consensus 235 ~i~~~~~~~ipii----a~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 235 RLAARLQLDIPII----GVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred HHHHhcCCCCCEE----EECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 6666664 34543 333432122456666778888877665554
No 33
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.77 E-value=0.00091 Score=68.60 Aligned_cols=186 Identities=23% Similarity=0.218 Sum_probs=122.0
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCC----CCCCHHHHHHHHHHHHhhcCcceE
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT----GFISYGEMVDQGQLITQAVSIPVI 154 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~----g~ltldEml~~~r~I~ra~~iPVI 154 (497)
.-|-++++.| +.+.+-++-.|+++|++|++++.+ ..|.|.- +.+.+-.=...++.|.+++++|||
T Consensus 10 ~g~a~m~kgg---vimdv~~~~~a~iae~~g~~~v~~--------~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVi 78 (293)
T PRK04180 10 RGFAEMLKGG---VIMDVVNAEQAKIAEEAGAVAVMA--------LERVPADIRAAGGVARMADPKMIEEIMDAVSIPVM 78 (293)
T ss_pred HHHHHHhcCC---eEEEeCCHHHHHHHHHhChHHHHH--------ccCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeE
Confidence 4578888755 456778899999999999987654 2244431 223333334566688889999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch
Q 010948 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (497)
Q Consensus 155 aD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~ 234 (497)
+=.--|| ..-++.++++|++-| |.. ..+.|.+++...++.- . +..+++=+.
T Consensus 79 gk~Righ------~~Ea~~L~~~GvDiI---D~T----------e~lrpad~~~~~~K~~------f--~~~fmad~~-- 129 (293)
T PRK04180 79 AKARIGH------FVEAQILEALGVDYI---DES----------EVLTPADEEYHIDKWD------F--TVPFVCGAR-- 129 (293)
T ss_pred EeehhhH------HHHHHHHHHcCCCEE---ecc----------CCCCchHHHHHHHHHH------c--CCCEEccCC--
Confidence 9888887 666788999999999 532 2355677777766532 2 223333222
Q ss_pred hcccHHHHHHHHHHHHhcCCCEEEec--------------------------c-------------CCCHHHHHHHHHhC
Q 010948 235 QALSLEESLRRSRAFADAGADVLFID--------------------------A-------------LASKEEMKAFCEIS 275 (497)
Q Consensus 235 ~~~~ldeaIeRAkAY~eAGAD~IfIe--------------------------g-------------~~s~eei~~i~~~v 275 (497)
.++|+++|. ++|||+|=-- + -.+.+.++++++..
T Consensus 130 ---~l~EAlrai----~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~ 202 (293)
T PRK04180 130 ---NLGEALRRI----AEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG 202 (293)
T ss_pred ---CHHHHHHHH----HCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC
Confidence 357777775 4899998654 1 12345666777665
Q ss_pred CCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 010948 276 PLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (497)
Q Consensus 276 ~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll 314 (497)
. +|+ +|+.+++-.+| -...++.++|+.-|..+...+
T Consensus 203 ~-iPV-V~~AeGGI~TP-edaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 203 R-LPV-VNFAAGGIATP-ADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred C-CCE-EEEEeCCCCCH-HHHHHHHHhCCCEEEEcHHhh
Confidence 4 563 46666532243 345777889999999998876
No 34
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.71 E-value=0.0075 Score=61.13 Aligned_cols=204 Identities=15% Similarity=0.187 Sum_probs=123.7
Q ss_pred ceeec-ccCCh--HHHHHHHHhCCcEEEecchhhhhhhcccCCC---------------CCCCHHHHHHHHHHHHhhcCc
Q 010948 90 VHQGP-ACFDA--LSAKLVEKSGFSFCFTSGFSISAARLALPDT---------------GFISYGEMVDQGQLITQAVSI 151 (497)
Q Consensus 90 ~iv~p-~ayDa--lSAriae~aGfdAI~vSG~avSas~lG~PD~---------------g~ltldEml~~~r~I~ra~~i 151 (497)
|+.+. |.+|. -..+.+.++||-++.+.+...- -..|+|.- .....+++++..+...+..+.
T Consensus 14 Pv~~aag~~~~~~~~~~~~~~~g~g~v~~kti~~~-~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~ 92 (301)
T PRK07259 14 PVMPASGTFGFGGEYARFYDLNGLGAIVTKSTTLE-PREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDT 92 (301)
T ss_pred CcEECCcCCCCCHHHHHHhhhcCCcEEEeCCCCCC-CCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCC
Confidence 44443 44653 3355567889999998876543 23455531 113356677766665555579
Q ss_pred ceEeeCCCCCCCHHHHHHHHHHHHHhC-ccEEEecCCCCCCCCCCCC--Cccc-cCHHHHHHHHHHHHHHHHhcCCCeEE
Q 010948 152 PVIGDGDNGYGNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTR--GRKV-VSREEAVMRIKAAVDARKESGSDIVI 227 (497)
Q Consensus 152 PVIaD~DtGYG~~~~V~rtVk~l~~AG-aAGI~IEDq~~pKrCGH~~--gk~l-vp~ee~~~KIrAAv~Ar~~~g~dfvI 227 (497)
||++-+ .|+ +++...+.++++.++| +++|-|-=. |.|.. |..+ -..+...+-|++++++ .++-|
T Consensus 93 p~i~si-~g~-~~~~~~~~a~~~~~aG~~D~iElN~~-----cP~~~~gg~~~~~~~~~~~eiv~~vr~~-----~~~pv 160 (301)
T PRK07259 93 PIIANV-AGS-TEEEYAEVAEKLSKAPNVDAIELNIS-----CPNVKHGGMAFGTDPELAYEVVKAVKEV-----VKVPV 160 (301)
T ss_pred cEEEEe-ccC-CHHHHHHHHHHHhccCCcCEEEEECC-----CCCCCCCccccccCHHHHHHHHHHHHHh-----cCCCE
Confidence 999877 232 4678889999999999 999987542 44432 2222 2344444455555444 25566
Q ss_pred EEeccchhcccHHHHHHHHHHHHhcCCCEEEec----cC-------------------------CCHHHHHHHHHhCCCC
Q 010948 228 VARTDSRQALSLEESLRRSRAFADAGADVLFID----AL-------------------------ASKEEMKAFCEISPLV 278 (497)
Q Consensus 228 iARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe----g~-------------------------~s~eei~~i~~~v~~v 278 (497)
..|.-. .+++.++-++.++++|||.|.+. +. ...+.++++.+.++ +
T Consensus 161 ~vKl~~----~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~-i 235 (301)
T PRK07259 161 IVKLTP----NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVD-I 235 (301)
T ss_pred EEEcCC----CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCC-C
Confidence 666532 34677888899999999998651 11 02356667777664 5
Q ss_pred CccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 279 PKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 279 P~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
|+.. .+|-.-.-+..++-+.|...|..+..++.
T Consensus 236 pvi~----~GGI~~~~da~~~l~aGAd~V~igr~ll~ 268 (301)
T PRK07259 236 PIIG----MGGISSAEDAIEFIMAGASAVQVGTANFY 268 (301)
T ss_pred CEEE----ECCCCCHHHHHHHHHcCCCceeEcHHHhc
Confidence 6543 23422123455666689998888776655
No 35
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.69 E-value=0.0038 Score=63.92 Aligned_cols=185 Identities=22% Similarity=0.197 Sum_probs=121.7
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec---chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC
Q 010948 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (497)
Q Consensus 81 Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vS---G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~ 157 (497)
|-++|+.| +...+-++-.|+++|++|.=++++= -+-+= -.+.+-.-.=+.+++.|.+.+++|||+=.
T Consensus 3 ~~~~~~~g---~~~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~-------~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~ 72 (283)
T cd04727 3 FAQMLKGG---VIMDVTNAEQARIAEEAGAVAVMALERVPADIR-------AAGGVARMADPKMIKEIMDAVSIPVMAKV 72 (283)
T ss_pred HHHHhcCC---eEEEeCCHHHHHHHHHcCceEEeeeccCchhhh-------hcCCeeecCCHHHHHHHHHhCCCCeEEee
Confidence 55677655 4567889999999999998887761 00000 01223333335577889899999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcc
Q 010948 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (497)
Q Consensus 158 DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~ 237 (497)
--|| .+-++.++++|++-| |.+ ..+.|.+++...|+.- . +..++|=+..
T Consensus 73 K~~~------~~Ea~~L~eaGvDiI---DaT----------~r~rP~~~~~~~iK~~------~--~~l~MAD~st---- 121 (283)
T cd04727 73 RIGH------FVEAQILEALGVDMI---DES----------EVLTPADEEHHIDKHK------F--KVPFVCGARN---- 121 (283)
T ss_pred ehhH------HHHHHHHHHcCCCEE---ecc----------CCCCcHHHHHHHHHHH------c--CCcEEccCCC----
Confidence 7787 777889999999999 532 1234567787777532 2 4556654433
Q ss_pred cHHHHHHHHHHHHhcCCCEEEecc---------------------------------------CCCHHHHHHHHHhCCCC
Q 010948 238 SLEESLRRSRAFADAGADVLFIDA---------------------------------------LASKEEMKAFCEISPLV 278 (497)
Q Consensus 238 ~ldeaIeRAkAY~eAGAD~IfIeg---------------------------------------~~s~eei~~i~~~v~~v 278 (497)
++|++++ .++|||+|=-.. -++.+.++++++.++ +
T Consensus 122 -leEal~a----~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~-i 195 (283)
T cd04727 122 -LGEALRR----ISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGR-L 195 (283)
T ss_pred -HHHHHHH----HHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcC-C
Confidence 5666665 459999986442 023466777777664 5
Q ss_pred CccceeeecCCC-CCCCCHHHHHhcCCCEEeccchHHH
Q 010948 279 PKMANMLEGGGK-TPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 279 P~~~N~l~~~g~-tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
|+ +|+-++ |- +| -...++.++|+.-|..+...+.
T Consensus 196 PV-V~iAeG-GI~Tp-ena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 196 PV-VNFAAG-GVATP-ADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred Ce-EEEEeC-CCCCH-HHHHHHHHcCCCEEEEcHHhhc
Confidence 53 233444 42 33 3457788899999999988864
No 36
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.67 E-value=0.023 Score=58.28 Aligned_cols=214 Identities=21% Similarity=0.254 Sum_probs=144.1
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcce
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPV 153 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPV 153 (497)
.+-|....+.+-.+.+.|+|+..+++. +|+.+.+.|+..+-+.. ....++.+...++..++..++||
T Consensus 7 k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~---------~~~g~~~~~~~~~~~A~~~~vPV 77 (283)
T PRK07998 7 RILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNA---------QLSGYDYIYEIVKRHADKMDVPV 77 (283)
T ss_pred HHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHH---------hhCCHHHHHHHHHHHHHHCCCCE
Confidence 345666666666688899999999854 46678999987643321 12346667778888899899999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCe-EEEEec-
Q 010948 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVART- 231 (497)
Q Consensus 154 IaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~df-vIiART- 231 (497)
.+=.|+|. +. ..+++.+++|...|.| |.. | .|.||-+++-+.+++-++..|... .=+++.
T Consensus 78 ~lHLDH~~-~~----e~i~~Ai~~GftSVM~-DgS------~------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vg 139 (283)
T PRK07998 78 SLHLDHGK-TF----EDVKQAVRAGFTSVMI-DGA------A------LPFEENIAFTKEAVDFAKSYGVPVEAELGAIL 139 (283)
T ss_pred EEECcCCC-CH----HHHHHHHHcCCCEEEE-eCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCC
Confidence 99999984 33 3444556889999999 542 2 467888888888888877654221 011221
Q ss_pred ---cch-h----cccHHHHHHHHHHHH-hcCCCEEEec-----cC---C--CHHHHHHHHHhCCCCCccceeeecCCCCC
Q 010948 232 ---DSR-Q----ALSLEESLRRSRAFA-DAGADVLFID-----AL---A--SKEEMKAFCEISPLVPKMANMLEGGGKTP 292 (497)
Q Consensus 232 ---DA~-~----~~~ldeaIeRAkAY~-eAGAD~IfIe-----g~---~--s~eei~~i~~~v~~vP~~~N~l~~~g~tP 292 (497)
|.. . -...+++ +.|. +.|+|++=+- |+ + +.+.+++|.+.++ +|+ ++.++..+|
T Consensus 140 g~ed~~~~~~~~~T~pe~a----~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~-vPL---VlHGgSG~~ 211 (283)
T PRK07998 140 GKEDDHVSEADCKTEPEKV----KDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP-VPL---VIHGGSGIP 211 (283)
T ss_pred CccccccccccccCCHHHH----HHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCC-CCE---EEeCCCCCC
Confidence 110 0 0133444 4454 6899987642 22 1 3588889988874 665 456544444
Q ss_pred CCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 293 ILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 293 ~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
.-.+.+.-+.|++-|-++..+..+...++++.+.
T Consensus 212 ~e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l~ 245 (283)
T PRK07998 212 PEILRSFVNYKVAKVNIASDLRKAFITTVGKAYV 245 (283)
T ss_pred HHHHHHHHHcCCcEEEECHHHHHHHHHHHHHHHH
Confidence 3344555678999999999999999999988864
No 37
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.63 E-value=0.028 Score=57.79 Aligned_cols=215 Identities=16% Similarity=0.191 Sum_probs=141.0
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc--Cc
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SI 151 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~--~i 151 (497)
.+-|.+..+.+-.+.+.|+|+.-+++. +|+.+.++|+-.+-+.. ..+| .++.+...++.+++.. ++
T Consensus 7 ~~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~-~~~~-------~~~~~~~~~~~~a~~~~~~v 78 (293)
T PRK07315 7 EKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAA-KYMG-------GYKVCKNLIENLVESMGITV 78 (293)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHH-hhcC-------cHHHHHHHHHHHHHHcCCCC
Confidence 345556566666688999999999854 56679999987654322 1112 1455677777787777 78
Q ss_pred ceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 010948 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVART 231 (497)
Q Consensus 152 PVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiART 231 (497)
||.+=.|+| +. +.+++.+++|+..|.|-.. | .|.+|.++.-+.+++-.+..|. .+-+-.
T Consensus 79 PV~lHLDH~--~~----~~i~~ai~~GftSVm~d~S-------~------l~~eEni~~t~~v~~~a~~~gv--~vE~El 137 (293)
T PRK07315 79 PVAIHLDHG--HY----EDALECIEVGYTSIMFDGS-------H------LPVEENLKLAKEVVEKAHAKGI--SVEAEV 137 (293)
T ss_pred cEEEECCCC--CH----HHHHHHHHcCCCEEEEcCC-------C------CCHHHHHHHHHHHHHHHHHcCC--EEEEec
Confidence 999999998 53 3555677899999999553 2 3567877777777776654332 221111
Q ss_pred cchh----------c-ccHHHHHHHHHHHHhcCCCEEEec--cC----------CCHHHHHHHHHhCCCCCccceeeecC
Q 010948 232 DSRQ----------A-LSLEESLRRSRAFADAGADVLFID--AL----------ASKEEMKAFCEISPLVPKMANMLEGG 288 (497)
Q Consensus 232 DA~~----------~-~~ldeaIeRAkAY~eAGAD~IfIe--g~----------~s~eei~~i~~~v~~vP~~~N~l~~~ 288 (497)
.... . .. .+.|+.+.+.|+|+|=+- .+ -+.+.++++.+.++.+|+ ++.++
T Consensus 138 G~i~g~ed~~~g~s~~t~----peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPl---VlhGG 210 (293)
T PRK07315 138 GTIGGEEDGIIGKGELAP----IEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPI---VLHGG 210 (293)
T ss_pred CcccCcCccccCccCCCC----HHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCE---EEECC
Confidence 1110 1 23 344566668999998653 11 245788899888754664 34443
Q ss_pred CCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHH
Q 010948 289 GKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328 (497)
Q Consensus 289 g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i 328 (497)
...|.-.+.++-+.|++-|-+...+..+...++++.+..+
T Consensus 211 SGi~~e~~~~~i~~Gi~KiNv~T~i~~~~~~~~~~~~~~~ 250 (293)
T PRK07315 211 SGIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKFARDY 250 (293)
T ss_pred CCCCHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHHHhc
Confidence 2244344566678899999999998887777777766544
No 38
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.62 E-value=0.02 Score=58.85 Aligned_cols=218 Identities=11% Similarity=0.131 Sum_probs=145.9
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcce
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPV 153 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPV 153 (497)
.+-|....+.+-.+.+.|+|+.-+++. +|+.+.+.|+..+-+. +.+ ..++.+...++.+++..++||
T Consensus 7 k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~----~~~-----~g~~~~~~~~~~~A~~~~VPV 77 (284)
T PRK09195 7 KQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGT----FSY-----AGTEYLLAIVSAAAKQYHHPL 77 (284)
T ss_pred HHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhH----Hhh-----CCHHHHHHHHHHHHHHCCCCE
Confidence 345666666666788999999999865 4667899998765332 122 335667888888888899999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCC----CeEEEE
Q 010948 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVA 229 (497)
Q Consensus 154 IaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~----dfvIiA 229 (497)
.+=.|+|. + ...+++.+++|...|.+... | .|.||=+++-+.+++-++..|. ++=-++
T Consensus 78 ~lHLDHg~-~----~e~i~~Ai~~GftSVM~DgS-------~------l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg 139 (284)
T PRK09195 78 ALHLDHHE-K----FDDIAQKVRSGVRSVMIDGS-------H------LPFAQNISLVKEVVDFCHRFDVSVEAELGRLG 139 (284)
T ss_pred EEECCCCC-C----HHHHHHHHHcCCCEEEeCCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 99999996 3 34566777899999999432 3 4678888888888777764431 111112
Q ss_pred eccch-hcccHH---HHHHHHHHHHh-cCCCEEEe-----ccC------CCHHHHHHHHHhCCCCCccceeeecCCCCCC
Q 010948 230 RTDSR-QALSLE---ESLRRSRAFAD-AGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (497)
Q Consensus 230 RTDA~-~~~~ld---eaIeRAkAY~e-AGAD~IfI-----eg~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (497)
..+.. ....-+ --.+.|+.|.+ .|+|++-+ +|+ -+.+.+++|.+.++ +|+ ++.|+..+|.
T Consensus 140 g~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-vPL---VLHGgSG~~~ 215 (284)
T PRK09195 140 GQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN-IPL---VLHGASGLPT 215 (284)
T ss_pred CcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCe---EEecCCCCCH
Confidence 11111 000000 01345666664 69998864 343 24678888888874 675 5666444443
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 294 lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
-.+.+.-++|++-|=+..-+..+...++++.+.
T Consensus 216 e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK09195 216 KDIQQTIKLGICKVNVATELKIAFSQALKNYLT 248 (284)
T ss_pred HHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 344555678999999999999999999988764
No 39
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.61 E-value=0.025 Score=58.12 Aligned_cols=217 Identities=15% Similarity=0.152 Sum_probs=146.9
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcce
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPV 153 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPV 153 (497)
.+-|++..+++-.+.+.|+|+.-+++. +|+.+.++|+-.+-+.. ..+.++.+...++.+++..++||
T Consensus 7 k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~---------~~~~~~~~~~~~~~~a~~~~VPV 77 (286)
T PRK12738 7 KYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTF---------KHIALEEIYALCSAYSTTYNMPL 77 (286)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchh---------hhCCHHHHHHHHHHHHHHCCCCE
Confidence 345667677776788999999999865 46679999987543321 12456777888888898889999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----eEEEE
Q 010948 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVIVA 229 (497)
Q Consensus 154 IaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvIiA 229 (497)
.+=.|+|. + .+.+++.+++|...|.|... | .|.||-+++-+.+++-++..|.. +=-++
T Consensus 78 alHLDHg~-~----~e~i~~ai~~GFtSVM~DgS-------~------lp~eeNi~~T~evv~~Ah~~gv~VEaElG~ig 139 (286)
T PRK12738 78 ALHLDHHE-S----LDDIRRKVHAGVRSAMIDGS-------H------FPFAENVKLVKSVVDFCHSQDCSVEAELGRLG 139 (286)
T ss_pred EEECCCCC-C----HHHHHHHHHcCCCeEeecCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeC
Confidence 99999995 3 34555667889999999432 2 46788888888888777654311 11122
Q ss_pred eccch---hc-cc-HHHHHHHHHHHHh-cCCCEEEe-----ccC------CCHHHHHHHHHhCCCCCccceeeecCCCCC
Q 010948 230 RTDSR---QA-LS-LEESLRRSRAFAD-AGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTP 292 (497)
Q Consensus 230 RTDA~---~~-~~-ldeaIeRAkAY~e-AGAD~IfI-----eg~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP 292 (497)
..+.. .. .. +. --+.|+.|.+ -|+|++=+ +|. -+.+.+++|.+.++ +|+ ++.|+..+|
T Consensus 140 g~ed~~~~~~~~~~~T-~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~-vPL---VLHGgSG~~ 214 (286)
T PRK12738 140 GVEDDMSVDAESAFLT-DPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPL---VLHGASDVP 214 (286)
T ss_pred CccCCcccccchhcCC-CHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC-CCE---EEeCCCCCC
Confidence 21110 00 00 00 1345666664 69999865 222 24578888888874 675 567654455
Q ss_pred CCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 293 ILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 293 ~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
.-.+.+.-++|++-|=+..-+..+..+++++.+.
T Consensus 215 ~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~ 248 (286)
T PRK12738 215 DEFVRRTIELGVTKVNVATELKIAFAGAVKAWFA 248 (286)
T ss_pred HHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 4445556678999999999999999999988864
No 40
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.61 E-value=0.043 Score=56.13 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=137.5
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcce
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPV 153 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPV 153 (497)
.+-|....+.+-.+-+.|+||.-+++. +|+.+.+.|+-.+-.. .-+ .+++.+...++..++..++||
T Consensus 7 ~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~----~~~-----~~~~~~~~~~~~~a~~~~vpv 77 (281)
T PRK06806 7 KELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVR----LNH-----SPLHLIGPLMVAAAKQAKVPV 77 (281)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcch----hcc-----CChHHHHHHHHHHHHHCCCCE
Confidence 345656566666788999999999865 4667889888665332 112 345556666677778889999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCC----CeEEEE
Q 010948 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVA 229 (497)
Q Consensus 154 IaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~----dfvIiA 229 (497)
.+=.|+|. + ...+++.+++|+..|+|-+. | .|.+|.++.-+.+++-.+..|. +..-++
T Consensus 78 ~lHlDH~~-~----~e~i~~Al~~G~tsVm~d~s-------~------~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG 139 (281)
T PRK06806 78 AVHFDHGM-T----FEKIKEALEIGFTSVMFDGS-------H------LPLEENIQKTKEIVELAKQYGATVEAEIGRVG 139 (281)
T ss_pred EEECCCCC-C----HHHHHHHHHcCCCEEEEcCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeEC
Confidence 99999985 3 34556777899999999664 2 2457777777777766654432 222233
Q ss_pred eccch------hcccHHHHHHHHHHHH-hcCCCEEEe-----------ccCCCHHHHHHHHHhCCCCCccceeeecCCCC
Q 010948 230 RTDSR------QALSLEESLRRSRAFA-DAGADVLFI-----------DALASKEEMKAFCEISPLVPKMANMLEGGGKT 291 (497)
Q Consensus 230 RTDA~------~~~~ldeaIeRAkAY~-eAGAD~IfI-----------eg~~s~eei~~i~~~v~~vP~~~N~l~~~g~t 291 (497)
..|.. .... .+.++.+. +.|+|.+-+ ...-+.+.++++.+.++ +|+. +.++...
T Consensus 140 ~~d~~~~~~g~s~t~----~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~-iPlV---~hG~SGI 211 (281)
T PRK06806 140 GSEDGSEDIEMLLTS----TTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH-IPLV---LHGGSGI 211 (281)
T ss_pred CccCCcccccceeCC----HHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC-CCEE---EECCCCC
Confidence 22211 0123 34456665 469999977 11235788999998875 5642 3331123
Q ss_pred CCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHH
Q 010948 292 PILNPLELEELGFKLVAYPLSLIGVSVRAMQDAL 325 (497)
Q Consensus 292 P~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al 325 (497)
|.-.+.++.+.|+..|-+...+..+...++++.+
T Consensus 212 ~~e~~~~~i~~G~~kinv~T~i~~a~~~a~~~~~ 245 (281)
T PRK06806 212 SPEDFKKCIQHGIRKINVATATFNSVITAVNNLV 245 (281)
T ss_pred CHHHHHHHHHcCCcEEEEhHHHHHHHHHHHHHHH
Confidence 3334567788899999998888876665555544
No 41
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=97.60 E-value=0.0016 Score=66.80 Aligned_cols=123 Identities=19% Similarity=0.209 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+.....+.++.+++.|++||.+ ||+++.-...+.||..+-+++++++.. .++-|++-+-+ .+.+++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v--------~GstGE~~~Lt~eEr~~v~~~~~~~~~---grvpvi~Gv~~---~~t~~a 92 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILT--------MGTFGECATLTWEEKQAFVATVVETVA---GRVPVFVGATT---LNTRDT 92 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CcccccchhCCHHHHHHHHHHHHHHhC---CCCCEEEEecc---CCHHHH
Confidence 5678899999999999999998 566676778899999999998888753 35555555433 357999
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHHH----HHHhCCCCCcc-ceeeecCCCC-CCCCHHHHHhc
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKM-ANMLEGGGKT-PILNPLELEEL 302 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~~----i~~~v~~vP~~-~N~l~~~g~t-P~lt~~eL~el 302 (497)
+++++.++++|||++++-.+ .+.+++.+ +++..+.+|++ .|. |..+ -.++.+.+.+|
T Consensus 93 i~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~---P~~tg~~l~~~~l~~L 159 (309)
T cd00952 93 IARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYAN---PEAFKFDFPRAAWAEL 159 (309)
T ss_pred HHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcC---chhcCCCCCHHHHHHH
Confidence 99999999999999988643 35555544 44555334543 232 2111 14566666655
No 42
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.55 E-value=0.037 Score=56.60 Aligned_cols=216 Identities=19% Similarity=0.216 Sum_probs=143.2
Q ss_pred HHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe
Q 010948 80 SLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (497)
Q Consensus 80 ~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa 155 (497)
-|....+.+-.+.+.|+||..+++. +|+.+.+.|+-.+-+.. . ...++.+...++.+++..++||.+
T Consensus 4 lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~----~-----~~~~~~~~~~~~~~a~~~~VPV~l 74 (276)
T cd00947 4 LLKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAI----K-----YAGLELLVAMVKAAAERASVPVAL 74 (276)
T ss_pred HHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchh----h-----hCCHHHHHHHHHHHHHHCCCCEEE
Confidence 3555555666688999999999965 46678999986654321 1 233777888888888888999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----e-EEEEe
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----I-VIVAR 230 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----f-vIiAR 230 (497)
=.|+|. +. ..+++.+++|...|.|... | .|.||-+++-+.+++-++..|.. + .|-+-
T Consensus 75 HLDH~~-~~----~~i~~ai~~GftSVMiD~S-------~------l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~ 136 (276)
T cd00947 75 HLDHGS-SF----ELIKRAIRAGFSSVMIDGS-------H------LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGE 136 (276)
T ss_pred ECCCCC-CH----HHHHHHHHhCCCEEEeCCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc
Confidence 999994 33 3344557899999999432 2 46788888888777776654311 1 11111
Q ss_pred ccchhcc-cHHHHHHHHHHHHh-cCCCEEEe-----ccC-------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCH
Q 010948 231 TDSRQAL-SLEESLRRSRAFAD-AGADVLFI-----DAL-------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP 296 (497)
Q Consensus 231 TDA~~~~-~ldeaIeRAkAY~e-AGAD~IfI-----eg~-------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~ 296 (497)
.|..... .+---.+.|+.|.+ .|+|++-+ +|. -+.+.++++.+.++ +|+ ++.|+..+|.-.+
T Consensus 137 e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~-vPL---VlHGgSG~~~e~~ 212 (276)
T cd00947 137 EDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN-VPL---VLHGGSGIPDEQI 212 (276)
T ss_pred cCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC-CCE---EEeCCCCCCHHHH
Confidence 1110000 00001355777775 59999873 332 14578888888875 665 4665443443334
Q ss_pred HHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 297 LELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 297 ~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
.++-+.|++-|=+...+..+.+.++++.+.
T Consensus 213 ~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 242 (276)
T cd00947 213 RKAIKLGVCKININTDLRLAFTAALREYLA 242 (276)
T ss_pred HHHHHcCCeEEEeChHHHHHHHHHHHHHHH
Confidence 555678999999999999999999988864
No 43
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.55 E-value=0.0023 Score=64.82 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=102.7
Q ss_pred cHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhh-------hhcccCC---CC-CCCHHHHHHHHHH
Q 010948 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLALPD---TG-FISYGEMVDQGQL 144 (497)
Q Consensus 76 ~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSa-------s~lG~PD---~g-~ltldEml~~~r~ 144 (497)
..-+.|++..++-+..++-.++|..++..+++. .+.+.++|.-+.. +.+|.|= .+ ..+++|++..++.
T Consensus 78 ~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~ 156 (266)
T PRK13398 78 EGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEY 156 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 445668888877788888899999999999988 9999999755432 2345553 23 3478888877766
Q ss_pred HHh----------------------------------hcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCC
Q 010948 145 ITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSP 190 (497)
Q Consensus 145 I~r----------------------------------a~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~p 190 (497)
|.. ..++||++|.+++-|..+.+...++.-+.+||+|+.||=...|
T Consensus 157 i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~p 236 (266)
T PRK13398 157 IMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEP 236 (266)
T ss_pred HHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCc
Confidence 632 2468999999998887777777788888999999999987655
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHHHH
Q 010948 191 KGCGHTRGRKVVSREEAVMRIKAAVDA 217 (497)
Q Consensus 191 KrCGH~~gk~lvp~ee~~~KIrAAv~A 217 (497)
.+-. .++..-++++|+..-++.++..
T Consensus 237 d~a~-~D~~~sl~p~~l~~l~~~i~~~ 262 (266)
T PRK13398 237 EKAL-SDARQTLNFEEMKELVDELKPM 262 (266)
T ss_pred cccC-CchhhcCCHHHHHHHHHHHHHH
Confidence 4443 4566677777776666555544
No 44
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=97.54 E-value=0.0029 Score=64.01 Aligned_cols=105 Identities=24% Similarity=0.282 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHh-CccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 163 NAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 163 ~~~~V~rtVk~l~~A-GaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
+.....+.++.+++. |+.||.+ ||+++.-...+.+|-.+-+++++++.. ..+-|++=+-+ ...+|
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~--------~GstGE~~~Lt~~Er~~~~~~~~~~~~---~~~~viagv~~---~~~~~ 84 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYV--------NGSTGEGFLLSVEERKQIAEIVAEAAK---GKVTLIAHVGS---LNLKE 84 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhC---CCCeEEeccCC---CCHHH
Confidence 556788999999999 9999988 566776678889999888888888753 35666665433 35799
Q ss_pred HHHHHHHHHhcCCCEEEeccC----CCHHHHHH----HHHhCCCCCcc
Q 010948 242 SLRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKM 281 (497)
Q Consensus 242 aIeRAkAY~eAGAD~IfIeg~----~s~eei~~----i~~~v~~vP~~ 281 (497)
+++.++.++++|||++++-.+ ++.+++.+ +++.+|..|++
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~ 132 (288)
T cd00954 85 SQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMI 132 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 999999999999999986332 35556554 44555335553
No 45
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.48 E-value=0.044 Score=56.26 Aligned_cols=218 Identities=16% Similarity=0.200 Sum_probs=144.6
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcce
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPV 153 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPV 153 (497)
.+-|....+.+-.+.+.|+||.-+++. +|+.+.+.|+-.+-+.. .. ..++.+...++..++..++||
T Consensus 7 k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~-~~--------~g~~~~~~~~~~~A~~~~VPV 77 (284)
T PRK12857 7 AELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAI-KY--------AGIEYISAMVRTAAEKASVPV 77 (284)
T ss_pred HHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHh-hh--------CCHHHHHHHHHHHHHHCCCCE
Confidence 345666566666688999999999854 56678999887653321 11 235567777888888889999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCC----CeEEEE
Q 010948 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVA 229 (497)
Q Consensus 154 IaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~----dfvIiA 229 (497)
.+=.|+|. +. +.+++.+++|...|.|... | .|.||=+++-+.+++-++..|. ++=-++
T Consensus 78 alHLDH~~-~~----e~i~~ai~~GftSVM~DgS-------~------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vg 139 (284)
T PRK12857 78 ALHLDHGT-DF----EQVMKCIRNGFTSVMIDGS-------K------LPLEENIALTKKVVEIAHAVGVSVEAELGKIG 139 (284)
T ss_pred EEECCCCC-CH----HHHHHHHHcCCCeEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecC
Confidence 99999995 33 3456667789999999442 3 3678888888888877764331 111122
Q ss_pred eccch-hc---ccHHHHHHHHHHHH-hcCCCEEEe-----ccC------CCHHHHHHHHHhCCCCCccceeeecCCCCCC
Q 010948 230 RTDSR-QA---LSLEESLRRSRAFA-DAGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (497)
Q Consensus 230 RTDA~-~~---~~ldeaIeRAkAY~-eAGAD~IfI-----eg~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (497)
..+.. .. ..+---.+.|+.|. +-|+|++=+ +|+ -+.+.+++|.+.++ +|+ ++.|+..+|.
T Consensus 140 g~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~-vPL---VlHGgSG~~~ 215 (284)
T PRK12857 140 GTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN-IPI---VLHGSSGVPD 215 (284)
T ss_pred CccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCE---EEeCCCCCCH
Confidence 21111 00 00000135566665 569999864 332 24678888888774 665 5676544444
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 294 lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
-.+.+.-++|++-|=+..-+..+..+++++.+.
T Consensus 216 e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~ 248 (284)
T PRK12857 216 EAIRKAISLGVRKVNIDTNIREAFVARLREVLE 248 (284)
T ss_pred HHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 445555678999999999999999999988764
No 46
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.47 E-value=0.035 Score=57.06 Aligned_cols=218 Identities=17% Similarity=0.161 Sum_probs=142.0
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC--cc
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS--IP 152 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~--iP 152 (497)
+-|....+.+-.+.+.|+||.-+++. +|+.+.+.|+-.+-+.. .+.. .++.+...++.+++..+ +|
T Consensus 8 ~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~----~~~~----~~~~~~~~~~~~A~~~~~~vP 79 (286)
T PRK08610 8 EMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAA----RYMS----GFYTVVKMVEGLMHDLNITIP 79 (286)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHH----hhcC----cHHHHHHHHHHHHHHcCCCCC
Confidence 44555566666788999999999854 56679999987654321 1211 24556777777777765 89
Q ss_pred eEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----eEEE
Q 010948 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVIV 228 (497)
Q Consensus 153 VIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvIi 228 (497)
|.+=.|+|. +. +.+++.+++|...|.|... | .|.||-+++-+.+++-++..|.. +=.+
T Consensus 80 V~lHLDHg~-~~----e~i~~ai~~GftSVM~DgS-------~------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 141 (286)
T PRK08610 80 VAIHLDHGS-SF----EKCKEAIDAGFTSVMIDAS-------H------SPFEENVATTKKVVEYAHEKGVSVEAELGTV 141 (286)
T ss_pred EEEECCCCC-CH----HHHHHHHHcCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 999999996 43 3445667889999999443 3 46788888888888777643311 1112
Q ss_pred Eeccch--hcccHHHHHHHHHHHH-hcCCCEEEe-----ccCC------CHHHHHHHHHhCCCCCccceeeecCCCCCCC
Q 010948 229 ARTDSR--QALSLEESLRRSRAFA-DAGADVLFI-----DALA------SKEEMKAFCEISPLVPKMANMLEGGGKTPIL 294 (497)
Q Consensus 229 ARTDA~--~~~~ldeaIeRAkAY~-eAGAD~IfI-----eg~~------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~l 294 (497)
+..+.. ....+---.+.|+.|. +-|+|++=+ +|.. +.+.+++|.+.++ +|+ ++.++..+|.-
T Consensus 142 gg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vPL---VLHGgSG~~~e 217 (286)
T PRK08610 142 GGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG-LPL---VLHGGTGIPTK 217 (286)
T ss_pred CCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC-CCE---EEeCCCCCCHH
Confidence 221110 0000000124455566 469998864 3332 5678888888874 675 56664444433
Q ss_pred CHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 295 NPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 295 t~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
.+.++-+.|++-|=+..-+..+..+++++.+.
T Consensus 218 ~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 249 (286)
T PRK08610 218 DIQKAIPFGTAKINVNTENQIASAKAVRDVLN 249 (286)
T ss_pred HHHHHHHCCCeEEEeccHHHHHHHHHHHHHHH
Confidence 45556678999999999999999999988864
No 47
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.47 E-value=0.017 Score=53.29 Aligned_cols=174 Identities=20% Similarity=0.172 Sum_probs=104.0
Q ss_pred HHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCC--CCCHHHHHHHHHHHHHhCccE
Q 010948 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG--YGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 104 iae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtG--YG~~~~V~rtVk~l~~AGaAG 181 (497)
.+.+.|++++.+.| +++..+........+||++=...+ +.......+.++..+++||++
T Consensus 21 ~~~~~gv~gi~~~g-------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~ 81 (201)
T cd00945 21 EAIEYGFAAVCVNP-------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred HHHHhCCcEEEECH-------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 44457999988886 555555444332258888654443 322678889999999999999
Q ss_pred EEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEecc
Q 010948 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (497)
Q Consensus 182 I~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg 261 (497)
|.+.--.. +... + ..+++.+.++++.++. ..+.++++--+.... ...++..+.++...++|+|+|=...
T Consensus 82 i~v~~~~~---~~~~-~----~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~--~~~~~~~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 82 IDVVINIG---SLKE-G----DWEEVLEEIAAVVEAA-DGGLPLKVILETRGL--KTADEIAKAARIAAEAGADFIKTST 150 (201)
T ss_pred EEEeccHH---HHhC-C----CHHHHHHHHHHHHHHh-cCCceEEEEEECCCC--CCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 99854321 1100 0 2467777777777664 223344444432221 2456677777777899999997643
Q ss_pred C-----CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEecc
Q 010948 262 L-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (497)
Q Consensus 262 ~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp 310 (497)
- .+.+.++++.+.++. + ++++..+|....-...+...+|...++++
T Consensus 151 ~~~~~~~~~~~~~~i~~~~~~-~--~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 151 GFGGGGATVEDVKLMKEAVGG-R--VGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCCCCCCCHHHHHHHHHhccc-C--CcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 2 267888888887641 1 22333223210023466667787777653
No 48
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.46 E-value=0.037 Score=55.87 Aligned_cols=205 Identities=17% Similarity=0.161 Sum_probs=119.9
Q ss_pred CceeecccCCh--HHHHHHHHhC-CcEEEecchhhhhhhcccCCC---------------CCCCHHHHHHHHHHHHhhcC
Q 010948 89 GVHQGPACFDA--LSAKLVEKSG-FSFCFTSGFSISAARLALPDT---------------GFISYGEMVDQGQLITQAVS 150 (497)
Q Consensus 89 ~~iv~p~ayDa--lSAriae~aG-fdAI~vSG~avSas~lG~PD~---------------g~ltldEml~~~r~I~ra~~ 150 (497)
.|+.+...+|. -.-+.+.+.| |.++.+.+...- ...|.|.- .....+++++..+...+..+
T Consensus 11 nP~~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~-~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~ 89 (296)
T cd04740 11 NPVILASGTFGFGEELSRVADLGKLGAIVTKSITLE-PREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFG 89 (296)
T ss_pred CCCEECCCCCCCHHHHHHHHhcCCceEEEECCcCCC-CCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCC
Confidence 35555544543 1223333455 888888865543 23344431 11234677777776655567
Q ss_pred cceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCC--Cccc-cCHHHHHHHHHHHHHHHHhcCCCeEE
Q 010948 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTR--GRKV-VSREEAVMRIKAAVDARKESGSDIVI 227 (497)
Q Consensus 151 iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~--gk~l-vp~ee~~~KIrAAv~Ar~~~g~dfvI 227 (497)
.|+++-+= | .+.....+.+++++++|+++|-|-=. |.|.. |..+ .+.+...+-+++++++. ++-|
T Consensus 90 ~p~ivsi~-g-~~~~~~~~~a~~~~~~G~d~iElN~~-----cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-----~~Pv 157 (296)
T cd04740 90 TPVIASIA-G-STVEEFVEVAEKLADAGADAIELNIS-----CPNVKGGGMAFGTDPEAVAEIVKAVKKAT-----DVPV 157 (296)
T ss_pred CcEEEEEe-c-CCHHHHHHHHHHHHHcCCCEEEEECC-----CCCCCCCcccccCCHHHHHHHHHHHHhcc-----CCCE
Confidence 89988762 2 24677888999999999999988532 44432 2222 34454555555555442 4455
Q ss_pred EEeccchhcccHHHHHHHHHHHHhcCCCEEEecc--------CC---------------------CHHHHHHHHHhCCCC
Q 010948 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDA--------LA---------------------SKEEMKAFCEISPLV 278 (497)
Q Consensus 228 iARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg--------~~---------------------s~eei~~i~~~v~~v 278 (497)
..|.-. ..++..+-+++.+++|||.|.+.. .. ..+.++++.+.++ +
T Consensus 158 ~vKl~~----~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~-i 232 (296)
T cd04740 158 IVKLTP----NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE-I 232 (296)
T ss_pred EEEeCC----CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC-C
Confidence 555321 345677888899999999886521 00 1255666666654 5
Q ss_pred CccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 279 PKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 279 P~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
|+.. .+|-+-.-+..++-++|...|..+..++.
T Consensus 233 pii~----~GGI~~~~da~~~l~~GAd~V~igra~l~ 265 (296)
T cd04740 233 PIIG----VGGIASGEDALEFLMAGASAVQVGTANFV 265 (296)
T ss_pred CEEE----ECCCCCHHHHHHHHHcCCCEEEEchhhhc
Confidence 6443 33432223556666789999988877655
No 49
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.46 E-value=0.04 Score=56.55 Aligned_cols=217 Identities=14% Similarity=0.160 Sum_probs=143.4
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceE
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVI 154 (497)
+-|....+.+-.+.+.|+||.-+++. +|+.+.+.|+..+-+.. . ...++.+...++.+++..++||.
T Consensus 8 ~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~----~-----~~g~~~~~~~~~~~a~~~~VPVa 78 (284)
T PRK12737 8 NMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTF----S-----YAGTDYIVAIAEVAARKYNIPLA 78 (284)
T ss_pred HHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHH----h-----hCCHHHHHHHHHHHHHHCCCCEE
Confidence 44555555555688899999999865 46678999986643321 1 12345577778888888899999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----eEEEEe
Q 010948 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVIVAR 230 (497)
Q Consensus 155 aD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvIiAR 230 (497)
+=.|+|. + ...+++.+++|...|.|... | .|.+|-+++-+.+++-++..|.. +=-++.
T Consensus 79 lHLDH~~-~----~e~i~~ai~~GftSVMiDgS-------~------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg 140 (284)
T PRK12737 79 LHLDHHE-D----LDDIKKKVRAGIRSVMIDGS-------H------LSFEENIAIVKEVVEFCHRYDASVEAELGRLGG 140 (284)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCeEEecCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC
Confidence 9999995 3 34556777899999999432 3 37788888888888877654321 111222
Q ss_pred ccchhcccHHH----HHHHHHHHH-hcCCCEEEe-----ccC------CCHHHHHHHHHhCCCCCccceeeecCCCCCCC
Q 010948 231 TDSRQALSLEE----SLRRSRAFA-DAGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPIL 294 (497)
Q Consensus 231 TDA~~~~~lde----aIeRAkAY~-eAGAD~IfI-----eg~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~l 294 (497)
++......-++ --+.|+.|. +-|+|++-+ +|+ -+.+.+++|.+.++ +|+ ++.|+..+|.-
T Consensus 141 ~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-iPL---VlHGgSG~~~e 216 (284)
T PRK12737 141 QEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS-IPL---VLHGASGVPDE 216 (284)
T ss_pred ccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCE---EEeCCCCCCHH
Confidence 11100000000 124455565 489998864 343 15677888888774 665 56664444433
Q ss_pred CHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 295 NPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 295 t~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
.+.+.-++|++-|=+..-+..+..+++++.+.
T Consensus 217 ~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK12737 217 DVKKAISLGICKVNVATELKIAFSDAVKKYFY 248 (284)
T ss_pred HHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 44555678999999999999999999988864
No 50
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.46 E-value=0.036 Score=57.03 Aligned_cols=219 Identities=15% Similarity=0.174 Sum_probs=144.3
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc--Cc
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SI 151 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~--~i 151 (497)
.+-|....+.+-.+.+.|+||.-+++. +|+.+.+.|+-.+-+.. .+ ...++.+...++..+... ++
T Consensus 7 k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~----~~----~~g~~~~~~~~~~~a~~~~~~V 78 (288)
T TIGR00167 7 KELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAA----KY----IAGLGAISAMVKAMSEAYPYGV 78 (288)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchh----hc----cCCHHHHHHHHHHHHHhccCCC
Confidence 344555556666788999999999854 56679999987643321 11 023777888888888888 89
Q ss_pred ceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----eEE
Q 010948 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVI 227 (497)
Q Consensus 152 PVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvI 227 (497)
||.+=.|+|. +. +.+++-+++|...|.|... | .|.||-+++-+.+++-++..|.. +=.
T Consensus 79 PV~lHLDHg~-~~----e~i~~ai~~GftSVMiDgS-------~------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~ 140 (288)
T TIGR00167 79 PVALHLDHGA-SE----EDCAQAVKAGFSSVMIDGS-------H------EPFEENIELTKKVVERAHKMGVSVEAELGT 140 (288)
T ss_pred cEEEECCCCC-CH----HHHHHHHHcCCCEEEecCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 9999999996 33 4455667899999999432 3 46788888888887777644311 111
Q ss_pred EEeccch-hcccHHH---HHHHHHHHHh-cCCCEEEec-----cC-----C--CHHHHHHHHHhCCCCCccceeeecCCC
Q 010948 228 VARTDSR-QALSLEE---SLRRSRAFAD-AGADVLFID-----AL-----A--SKEEMKAFCEISPLVPKMANMLEGGGK 290 (497)
Q Consensus 228 iARTDA~-~~~~lde---aIeRAkAY~e-AGAD~IfIe-----g~-----~--s~eei~~i~~~v~~vP~~~N~l~~~g~ 290 (497)
++..+.. ....-+. -.+.|+.|.+ -|+|++-+- |. . +.+.+++|.+.++ +|+ ++.++..
T Consensus 141 vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~-vPL---VlHGgSG 216 (288)
T TIGR00167 141 LGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN-LPL---VLHGGSG 216 (288)
T ss_pred ccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC-CCE---EEeCCCC
Confidence 2221111 0000000 1256777775 699998652 22 2 5678888888875 675 4565433
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 291 TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 291 tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
+|.-.+.++-+.|++-|=+...+..+.+.++++.+.
T Consensus 217 ~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 252 (288)
T TIGR00167 217 IPDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYA 252 (288)
T ss_pred CCHHHHHHHHHcCCeEEEcChHHHHHHHHHHHHHHH
Confidence 443334555578999999999999999999988864
No 51
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=97.43 E-value=0.0045 Score=63.08 Aligned_cols=105 Identities=20% Similarity=0.278 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+.....+.++.+++.|++||.+ ||+++.-...+.+|-.+-++.++++.. ..+-|++-+-+ .+.+|+
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v--------~GstGE~~~Ls~~Er~~l~~~~~~~~~---g~~pvi~gv~~---~~t~~a 84 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISV--------GGTSGEPGSLTLEERKQAIENAIDQIA---GRIPFAPGTGA---LNHDET 84 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhC---CCCcEEEECCc---chHHHH
Confidence 4568899999999999999988 455666678899999988888887653 34555655433 467999
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHH----HHHHhCCCCCcc
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMK----AFCEISPLVPKM 281 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~----~i~~~v~~vP~~ 281 (497)
|+.++.++++|||++++-.+ ++.+++. .++++.|.+|++
T Consensus 85 i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~ 131 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPII 131 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEE
Confidence 99999999999999988544 3445544 455555345653
No 52
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.39 E-value=0.064 Score=55.08 Aligned_cols=213 Identities=13% Similarity=0.123 Sum_probs=145.6
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceE
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVI 154 (497)
+-|....+.+-.+.+.|+||.-+++. +|+.+.+.|+.-+-+. ..+ ..++.+...++.+++..++||.
T Consensus 6 ~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~----~~~-----~~~~~~~~~~~~~a~~~~VPVa 76 (282)
T TIGR01858 6 YMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGT----FKH-----AGTEYIVALCSAASTTYNMPLA 76 (282)
T ss_pred HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccH----Hhh-----CCHHHHHHHHHHHHHHCCCCEE
Confidence 45666666666788999999999865 4667899998664332 122 3466778888889988999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----eEEEEe
Q 010948 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVIVAR 230 (497)
Q Consensus 155 aD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvIiAR 230 (497)
+=.|+|. + .+.+++.+++|...|.+... | .|.||-++.-+.+++-++..|.. +=-++.
T Consensus 77 lHLDHg~-~----~e~i~~ai~~GFtSVM~DgS-------~------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 138 (282)
T TIGR01858 77 LHLDHHE-S----LDDIRQKVHAGVRSAMIDGS-------H------FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGG 138 (282)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCEEeecCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCC
Confidence 9999995 3 34566778899999999443 2 46788888888888777654411 111222
Q ss_pred ccch-h-------cccHHHHHHHHHHHH-hcCCCEEEe-----ccC------CCHHHHHHHHHhCCCCCccceeeecCCC
Q 010948 231 TDSR-Q-------ALSLEESLRRSRAFA-DAGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGK 290 (497)
Q Consensus 231 TDA~-~-------~~~ldeaIeRAkAY~-eAGAD~IfI-----eg~------~s~eei~~i~~~v~~vP~~~N~l~~~g~ 290 (497)
++.. . -.+. +.|+.|. +-|+|++=+ +|. -+.+.+++|.+.++ +|+ ++.++..
T Consensus 139 ~e~~~~~~~~~~~~T~p----eea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~-iPL---VlHGgSG 210 (282)
T TIGR01858 139 VEDDLSVDEEDALYTDP----QEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD-VPL---VLHGASD 210 (282)
T ss_pred ccCCCccccchhccCCH----HHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhC-CCe---EEecCCC
Confidence 1111 0 0122 4445555 689999864 342 24678888888875 675 5666444
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 291 TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 291 tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
+|.-.+.+.-++|++-|=+...+..+..+++++.+.
T Consensus 211 ~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01858 211 VPDEDVRRTIELGICKVNVATELKIAFSGAVKAYFA 246 (282)
T ss_pred CCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 443344555678999999999999999999988864
No 53
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=97.37 E-value=0.0048 Score=64.59 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=111.7
Q ss_pred Ccceeecccc-CCCccccccCcHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhh-------hhccc
Q 010948 56 GTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLAL 127 (497)
Q Consensus 56 r~~~~~R~y~-rgs~~i~~a~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSa-------s~lG~ 127 (497)
-||.+++||+ ||-- ...-+-|++..++-+.-++-.++|.-++..+.+. .|.+.+++.-+.. +.+|.
T Consensus 128 ~fKpRTsp~sf~G~g-----~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lqIgAr~~~N~~LL~~va~~~k 201 (335)
T PRK08673 128 AFKPRTSPYSFQGLG-----EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQIGARNMQNFDLLKEVGKTNK 201 (335)
T ss_pred EecCCCCCccccccc-----HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHcCCC
Confidence 3566667776 4322 2334456666666677788899999999999988 9999999765432 23465
Q ss_pred CC---CC-CCCHHHHHHHHHHHHh----------------------------------hcCcceEeeCCCCCCCHHHHHH
Q 010948 128 PD---TG-FISYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKR 169 (497)
Q Consensus 128 PD---~g-~ltldEml~~~r~I~r----------------------------------a~~iPVIaD~DtGYG~~~~V~r 169 (497)
|= .+ ..|++|++..++.|.. .+++|||+|.+++-|....+..
T Consensus 202 PViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~ 281 (335)
T PRK08673 202 PVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEP 281 (335)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHH
Confidence 53 23 3488898888777742 2468999999999887666666
Q ss_pred HHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhc
Q 010948 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKES 221 (497)
Q Consensus 170 tVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~ 221 (497)
..+.-+.+||+|+.||=...|.+-- .++..-++++++..-++.++.....+
T Consensus 282 ~a~AAvA~GAdGliIE~H~~pd~al-sD~~~sl~p~e~~~lv~~i~~i~~~~ 332 (335)
T PRK08673 282 LALAAVAAGADGLIVEVHPDPEKAL-SDGPQSLTPEEFEELMKKLRAIAEAL 332 (335)
T ss_pred HHHHHHHhCCCEEEEEecCCcccCC-CcchhcCCHHHHHHHHHHHHHHHHHh
Confidence 6777788999999999877665543 56666777777766666655554433
No 54
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.36 E-value=0.0099 Score=57.48 Aligned_cols=177 Identities=21% Similarity=0.296 Sum_probs=104.4
Q ss_pred ChH-HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHH
Q 010948 98 DAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (497)
Q Consensus 98 Dal-SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~ 176 (497)
|+. -|+..++.|++.+++....- ..-|.+ ...+.+++|++.+++||+++. |..+. +.++++.+
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~--~~~~~~--------~~~~~i~~i~~~~~~pv~~~G--gI~~~----e~~~~~~~ 93 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDG--AKGGEP--------VNLELIEEIVKAVGIPVQVGG--GIRSL----EDIERLLD 93 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCc--cccCCC--------CCHHHHHHHHHhcCCCEEEeC--CcCCH----HHHHHHHH
Confidence 544 35777789999999984431 111222 225567778888899999862 23333 33456667
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch---------hcccHHHHHHHHH
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR---------QALSLEESLRRSR 247 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~---------~~~~ldeaIeRAk 247 (497)
+||+.|.|-... +-++ +++.++.. . .+.+-++.+ .|.. ....-.+.++.++
T Consensus 94 ~Gad~vvigs~~------------l~dp-~~~~~i~~---~---~g~~~i~~s-id~~~~~~~~~~~~~~~~~~~~~~~~ 153 (234)
T cd04732 94 LGVSRVIIGTAA------------VKNP-ELVKELLK---E---YGGERIVVG-LDAKDGKVATKGWLETSEVSLEELAK 153 (234)
T ss_pred cCCCEEEECchH------------HhCh-HHHHHHHH---H---cCCceEEEE-EEeeCCEEEECCCeeecCCCHHHHHH
Confidence 999999875442 1122 23333322 1 222222221 1110 0011235578899
Q ss_pred HHHhcCCCEEEeccCC--------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 248 AFADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 248 AY~eAGAD~IfIeg~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
.+.++||+.+.+..+. +.+.++++++.++ +|..+| +|-...-++.++.+.|+.-|..+..++.
T Consensus 154 ~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~-ipvi~~----GGi~~~~di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 154 RFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATG-IPVIAS----GGVSSLDDIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred HHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcC-CCEEEe----cCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 9999999999887652 3578888888765 565433 3422112356777889999999887654
No 55
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.33 E-value=0.0053 Score=59.41 Aligned_cols=183 Identities=22% Similarity=0.292 Sum_probs=103.8
Q ss_pred CChHH-HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHH
Q 010948 97 FDALS-AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (497)
Q Consensus 97 yDalS-Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~ 175 (497)
.|+.. |+..++.|++.+++.... .+..|.+ ..++.++.|++.+++||+++ .|..+.+.+ +++.
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld--~~~~g~~--------~~~~~i~~i~~~~~~pv~~~--GGI~~~ed~----~~~~ 93 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLD--GAKAGKP--------VNLELIEAIVKAVDIPVQVG--GGIRSLETV----EALL 93 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCC--ccccCCc--------ccHHHHHHHHHHCCCCEEEc--CCcCCHHHH----HHHH
Confidence 36655 677888999999998642 1112322 23566777888889999994 344454444 4666
Q ss_pred HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCe---EEEEeccchhcccHHHHHHHHHHHHhc
Q 010948 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI---VIVARTDSRQALSLEESLRRSRAFADA 252 (497)
Q Consensus 176 ~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~df---vIiARTDA~~~~~ldeaIeRAkAY~eA 252 (497)
++||++|.+=-.. .+..+.+.++......+-....|+ .+ .+.......-.+.++.++.+.++
T Consensus 94 ~~Ga~~vilg~~~-------------l~~~~~l~ei~~~~~~~i~vsid~k~~~v--~~~g~~~~~~~~~~e~~~~~~~~ 158 (233)
T PRK00748 94 DAGVSRVIIGTAA-------------VKNPELVKEACKKFPGKIVVGLDARDGKV--ATDGWLETSGVTAEDLAKRFEDA 158 (233)
T ss_pred HcCCCEEEECchH-------------HhCHHHHHHHHHHhCCCceeeeeccCCEE--EEccCeecCCCCHHHHHHHHHhc
Confidence 7899999763221 111123333322110000000111 00 01111000112346778889999
Q ss_pred CCCEEEeccC--------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcC-CCEEeccchHHH
Q 010948 253 GADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAYPLSLIG 315 (497)
Q Consensus 253 GAD~IfIeg~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elG-v~~Vsyp~~ll~ 315 (497)
||+.|++... .+.+.++++++.++ +|..+ .+|-...-++.++.+.| +.-|+.+..++.
T Consensus 159 g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~-ipvia----~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPNVEATRELAAAVP-IPVIA----SGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred CCCEEEEeeecCcCCcCCCCHHHHHHHHHhCC-CCEEE----eCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 9998888755 34678899988765 56543 33432222456678888 999998876543
No 56
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.31 E-value=0.0086 Score=61.43 Aligned_cols=199 Identities=16% Similarity=0.125 Sum_probs=115.9
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHh--hcCcceEeeCCCCCC-CHHHHHH
Q 010948 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ--AVSIPVIGDGDNGYG-NAMNVKR 169 (497)
Q Consensus 93 ~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~r--a~~iPVIaD~DtGYG-~~~~V~r 169 (497)
|.++-|..--+++.+.|.+.+|+-- -. +..+-+.. .. .+.... ....|+++-+ +| ++....+
T Consensus 15 m~~~t~~~fR~l~~~~g~~~~~tem-i~-~~~l~~~~------~~----~~~~~~~~~~~~p~i~ql---~g~~~~~~~~ 79 (319)
T TIGR00737 15 MAGVTDSPFRRLVAEYGAGLTVCEM-VS-SEAIVYDS------QR----TMRLLDIAEDETPISVQL---FGSDPDTMAE 79 (319)
T ss_pred CCCCCcHHHHHHHHHHCCCEEEECC-EE-EhhhhcCC------HH----HHHHhhcCCccceEEEEE---eCCCHHHHHH
Confidence 4489999999999999987777542 11 11111111 01 111111 2247888765 34 5788999
Q ss_pred HHHHHHHhCccEEEecCCC-CCCCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHH
Q 010948 170 TVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSR 247 (497)
Q Consensus 170 tVk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAk 247 (497)
+++.+.++|++||.|--.. .+|++.+-+|..+. .++.+.+-+++++++ .++-|..+.-........+.++-++
T Consensus 80 aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-----~~~pv~vKir~g~~~~~~~~~~~a~ 154 (319)
T TIGR00737 80 AAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-----VDIPVTVKIRIGWDDAHINAVEAAR 154 (319)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-----cCCCEEEEEEcccCCCcchHHHHHH
Confidence 9999999999999996543 23344443454444 334333444444333 2344455442111112235677888
Q ss_pred HHHhcCCCEEEeccC---------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHH-hcCCCEEeccchHHHH
Q 010948 248 AFADAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELE-ELGFKLVAYPLSLIGV 316 (497)
Q Consensus 248 AY~eAGAD~IfIeg~---------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~-elGv~~Vsyp~~ll~a 316 (497)
.++++|+|.|.+++. ...+.++++.+.++ +|+..| |+-.-.-+..++. ..|+..|..+-.++.-
T Consensus 155 ~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-ipvi~n----GgI~~~~da~~~l~~~gad~VmigR~~l~~ 228 (319)
T TIGR00737 155 IAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR-IPVIGN----GDIFSPEDAKAMLETTGCDGVMIGRGALGN 228 (319)
T ss_pred HHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC-CcEEEe----CCCCCHHHHHHHHHhhCCCEEEEChhhhhC
Confidence 999999999998753 23556677777765 676544 3322112344444 5789999998766643
No 57
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.29 E-value=0.013 Score=57.30 Aligned_cols=178 Identities=20% Similarity=0.239 Sum_probs=103.4
Q ss_pred ChH-HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHH
Q 010948 98 DAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (497)
Q Consensus 98 Dal-SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~ 176 (497)
|+. .|+.+.+.|++.+++--...+ ..+.. +....++.+++.+++|++++ .|.-+. +.++.+.+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~--~~~~~--------~~~~~i~~i~~~~~~~l~v~--GGi~~~----~~~~~~~~ 96 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGA--FEGER--------KNAEAIEKIIEAVGVPVQLG--GGIRSA----EDAASLLD 96 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhh--hcCCc--------ccHHHHHHHHHHcCCcEEEc--CCcCCH----HHHHHHHH
Confidence 444 346666789999887643321 12222 23556677888889999994 333333 33456667
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch----hcccH-----HHHHHHHH
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR----QALSL-----EESLRRSR 247 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~----~~~~l-----deaIeRAk 247 (497)
+||++|+|--... -.+ +.+.++ ++. .+.+-++.+- |.. ...+. .+.++.++
T Consensus 97 ~Ga~~v~iGs~~~------------~~~-~~~~~i---~~~---~g~~~i~~si-d~~~~~v~~~g~~~~~~~~~~~~~~ 156 (241)
T PRK13585 97 LGVDRVILGTAAV------------ENP-EIVREL---SEE---FGSERVMVSL-DAKDGEVVIKGWTEKTGYTPVEAAK 156 (241)
T ss_pred cCCCEEEEChHHh------------hCh-HHHHHH---HHH---hCCCcEEEEE-EeeCCEEEECCCcccCCCCHHHHHH
Confidence 9999999933211 011 223332 222 2222232211 110 00011 14577888
Q ss_pred HHHhcCCCEEEeccCC--------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 248 AFADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 248 AY~eAGAD~IfIeg~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
.+.++||+.|++.... +.+.++++++.++ +|.. ..||-...-++.++.++|+..|+.+..++..
T Consensus 157 ~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~-iPvi----a~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 157 RFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVD-IPVI----ASGGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred HHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCC-CCEE----EeCCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 8899999999986652 3467888888775 5644 3344332224567789999999998876654
No 58
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.27 E-value=0.013 Score=56.77 Aligned_cols=178 Identities=20% Similarity=0.261 Sum_probs=100.7
Q ss_pred ChHH-HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHH
Q 010948 98 DALS-AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (497)
Q Consensus 98 DalS-Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~ 176 (497)
|+.. |+..++.|++.+++--.. ++..|.+. . .+.++.+++.+++|+.++. |.-+.+.+ +.+.+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~--~~~~g~~~----~----~~~i~~i~~~~~~pi~~gg--GI~~~ed~----~~~~~ 92 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLD--GAKEGGPV----N----LPVIKKIVRETGVPVQVGG--GIRSLEDV----EKLLD 92 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCC--ccccCCCC----c----HHHHHHHHHhcCCCEEEeC--CcCCHHHH----HHHHH
Confidence 5554 467788999999984222 11113221 1 4456677777789999964 54454444 56667
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEE---Eec-----cchhcccHHHHHHHHHH
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---ART-----DSRQALSLEESLRRSRA 248 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi---ART-----DA~~~~~ldeaIeRAkA 248 (497)
+||+.|.+=.-. +-+++ .++.+.+. .|.+-++. .|- +......-...++.++.
T Consensus 93 ~Ga~~vvlgs~~------------l~d~~----~~~~~~~~---~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 153 (230)
T TIGR00007 93 LGVDRVIIGTAA------------VENPD----LVKELLKE---YGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKR 153 (230)
T ss_pred cCCCEEEEChHH------------hhCHH----HHHHHHHH---hCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHH
Confidence 999999773322 11122 22222222 23222221 121 11000001234678899
Q ss_pred HHhcCCCEEEeccC--------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 249 FADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 249 Y~eAGAD~IfIeg~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
|.+.||+.+.+..+ .+.+.++++++.++ +|..+ .+|-...-+++++.+.|+..|+.+..++.
T Consensus 154 ~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~-ipvia----~GGi~~~~di~~~~~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 154 LEELGLEGIIYTDISRDGTLSGPNFELTKELVKAVN-VPVIA----SGGVSSIDDLIALKKLGVYGVIVGKALYE 223 (230)
T ss_pred HHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCC-CCEEE----eCCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 99999998886644 24577888888754 56443 33432222456677899999999887654
No 59
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.26 E-value=0.0089 Score=61.97 Aligned_cols=197 Identities=14% Similarity=0.061 Sum_probs=118.6
Q ss_pred ccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHh-hcCcceEeeCCCCCC-CHHHHHHHHH
Q 010948 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ-AVSIPVIGDGDNGYG-NAMNVKRTVK 172 (497)
Q Consensus 95 ~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~r-a~~iPVIaD~DtGYG-~~~~V~rtVk 172 (497)
|.=|..-=+++.+.|...++.|-+-.+.. +-+.+. .+ .+.. -...|+++-+ +| +++...++++
T Consensus 10 g~Td~~fR~l~~~~g~~~~~~TEMv~a~~-l~~~~~-----~~------~l~~~~~e~p~~vQl---~g~~p~~~~~aA~ 74 (318)
T TIGR00742 10 DWTDRHFRYFLRLLSKHTLLYTEMITAKA-IIHGDK-----KD------ILKFSPEESPVALQL---GGSDPNDLAKCAK 74 (318)
T ss_pred CCcCHHHHHHHHHhCCCCEEEeCCEEEhh-hhccCH-----HH------HcccCCCCCcEEEEE---ccCCHHHHHHHHH
Confidence 77777777788888874444443222111 111110 01 1111 1247877654 34 5788899999
Q ss_pred HHHHhCccEEEecCCCC-CCCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH
Q 010948 173 GYIKAGFAGIILEDQVS-PKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (497)
Q Consensus 173 ~l~~AGaAGI~IEDq~~-pKrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~ 250 (497)
.+.+.|+++|.|-=+-. +|.+....|-.|. .++...+-+++++++. +.++-|--|.--......+++++-++.++
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~---~~PVsvKiR~g~~~~~~~~~~~~~~~~l~ 151 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV---NIPVTVKHRIGIDPLDSYEFLCDFVEIVS 151 (318)
T ss_pred HHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh---CCCeEEEEecCCCCcchHHHHHHHHHHHH
Confidence 99999999999977642 3333222233444 4444444455555443 34555555542211234678899999999
Q ss_pred hcCCCEEEeccCC-----------------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhc--CCCEEeccc
Q 010948 251 DAGADVLFIDALA-----------------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL--GFKLVAYPL 311 (497)
Q Consensus 251 eAGAD~IfIeg~~-----------------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~el--Gv~~Vsyp~ 311 (497)
++|||+|-|++-+ +-+.+.++.+.++.+|++.| |+ ..+.++..++ |+..|..+-
T Consensus 152 ~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~N----Gd---I~s~~da~~~l~g~dgVMigR 224 (318)
T TIGR00742 152 GKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEIN----GG---IKNSEQIKQHLSHVDGVMVGR 224 (318)
T ss_pred HcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEE----CC---cCCHHHHHHHHhCCCEEEECH
Confidence 9999999999854 23567777777766787665 33 2466665554 898888876
Q ss_pred hHHHH
Q 010948 312 SLIGV 316 (497)
Q Consensus 312 ~ll~a 316 (497)
.++.-
T Consensus 225 gal~n 229 (318)
T TIGR00742 225 EAYEN 229 (318)
T ss_pred HHHhC
Confidence 65553
No 60
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=97.26 E-value=0.0081 Score=61.09 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHhC-ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 163 NAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AG-aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
|.....+.++.+++.| ++||.+ ||+++.-...+.||..+-++++++... ..+-|++-+-+ .+.++
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~--------~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~~---~~t~~ 84 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYV--------GGSTGENFMLSTEEKKEIFRIAKDEAK---DQIALIAQVGS---VNLKE 84 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEE--------CCcccccccCCHHHHHHHHHHHHHHhC---CCCcEEEecCC---CCHHH
Confidence 5567889999999999 999988 455666667789999888888887753 24444444322 35799
Q ss_pred HHHHHHHHHhcCCCEEEeccC----CCHHHHHHHHH----hCCCCCccceeeecCCCC-CCCCHHHHHhc
Q 010948 242 SLRRSRAFADAGADVLFIDAL----ASKEEMKAFCE----ISPLVPKMANMLEGGGKT-PILNPLELEEL 302 (497)
Q Consensus 242 aIeRAkAY~eAGAD~IfIeg~----~s~eei~~i~~----~v~~vP~~~N~l~~~g~t-P~lt~~eL~el 302 (497)
++++++.++++|||+|++-.+ ++.+++....+ +.+..|++ +-..|..+ -.++.+.+.++
T Consensus 85 ~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~--lYn~P~~tg~~l~~~~i~~L 152 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMI--VYSIPFLTGVNMGIEQFGEL 152 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEE--EEeCccccccCcCHHHHHHH
Confidence 999999999999999988443 35566655443 33334543 22222222 14666655555
No 61
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=97.25 E-value=0.0069 Score=61.41 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHH-hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 163 NAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 163 ~~~~V~rtVk~l~~-AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
+.....+.++.+++ .|++||.+ ||+++.-..++.+|..+-++.++++.. ..+-|++-+-+ ...++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v--------~GstGE~~~Ls~eEr~~~~~~~~~~~~---~~~~viagvg~---~~t~~ 87 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYV--------GGSTGEAFLLSTEEKKQVLEIVAEEAK---GKVKLIAQVGS---VNTAE 87 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEE--------CCCccccccCCHHHHHHHHHHHHHHhC---CCCCEEecCCC---CCHHH
Confidence 55788999999999 99999988 566666678889999888888888753 35556665433 46799
Q ss_pred HHHHHHHHHhcCCCEEEeccC----CCHHHHH----HHHHhCCCCCcc-ceeeecCCCCCCCCHHHHHhc
Q 010948 242 SLRRSRAFADAGADVLFIDAL----ASKEEMK----AFCEISPLVPKM-ANMLEGGGKTPILNPLELEEL 302 (497)
Q Consensus 242 aIeRAkAY~eAGAD~IfIeg~----~s~eei~----~i~~~v~~vP~~-~N~l~~~g~tP~lt~~eL~el 302 (497)
+++.++.++++|||++++-.+ ++.+++. +++++++ .|++ .|.-...| -.++.+.+.+|
T Consensus 88 ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~-lPv~iYn~P~~tg--~~l~~~~l~~L 154 (293)
T PRK04147 88 AQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSAD-NPMIVYNIPALTG--VNLSLDQFNEL 154 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC-CCEEEEeCchhhc--cCCCHHHHHHH
Confidence 999999999999999987543 3445544 3445544 4543 33211111 14566666665
No 62
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.25 E-value=0.086 Score=54.21 Aligned_cols=218 Identities=17% Similarity=0.163 Sum_probs=142.2
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC--cc
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS--IP 152 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~--iP 152 (497)
+-|....+.+-.+-+.|+||.-+++. +|+.+.++|+-.+-+.. .+ ...++.+...++.+++..+ +|
T Consensus 8 ~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~----~~----~~~~~~~~~~~~~~a~~~~~~VP 79 (285)
T PRK07709 8 EMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAA----RH----MTGFKTVVAMVKALIEEMNITVP 79 (285)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchh----hh----cCCHHHHHHHHHHHHHHcCCCCc
Confidence 34555556666688899999999854 46678999987643321 11 0335556777777777665 89
Q ss_pred eEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----eEEE
Q 010948 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVIV 228 (497)
Q Consensus 153 VIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvIi 228 (497)
|.+=.|+|. + .+.+++.+++|...|.|... | .|.+|-+++-+.+++-++..|.. +=-+
T Consensus 80 V~lHLDHg~-~----~e~i~~ai~~GftSVM~DgS-------~------lp~eeNi~~Trevv~~Ah~~gv~VEaElG~i 141 (285)
T PRK07709 80 VAIHLDHGS-S----FEKCKEAIDAGFTSVMIDAS-------H------HPFEENVETTKKVVEYAHARNVSVEAELGTV 141 (285)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 999999995 3 34445667899999999443 3 46788888888888777654321 1112
Q ss_pred Eec-cch-hcccHHHHHHHHHHHH-hcCCCEEEe-----ccC------CCHHHHHHHHHhCCCCCccceeeecCCCCCCC
Q 010948 229 ART-DSR-QALSLEESLRRSRAFA-DAGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPIL 294 (497)
Q Consensus 229 ART-DA~-~~~~ldeaIeRAkAY~-eAGAD~IfI-----eg~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~l 294 (497)
+.. |.. ....+---.+.|+.|. +.|+|++-+ +|. -+.+.+++|.+.++ +|+ ++.++..+|.-
T Consensus 142 gg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~-iPL---VLHGgSG~~~e 217 (285)
T PRK07709 142 GGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPL---VLHGGTGIPTA 217 (285)
T ss_pred CCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC-CCE---EEeCCCCCCHH
Confidence 222 110 0000000124556666 479999875 333 24578888888874 675 56664444433
Q ss_pred CHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 295 NPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 295 t~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
.+...-++|++-|=+..-+..+..+++++.+.
T Consensus 218 ~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 249 (285)
T PRK07709 218 DIEKAISLGTSKINVNTENQIEFTKAVREVLN 249 (285)
T ss_pred HHHHHHHcCCeEEEeChHHHHHHHHHHHHHHH
Confidence 44555678999999999999999999988864
No 63
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.24 E-value=0.0066 Score=55.96 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=83.4
Q ss_pred eEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCC-CeEEEEec
Q 010948 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS-DIVIVART 231 (497)
Q Consensus 153 VIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~-dfvIiART 231 (497)
+++..|+|+.+.....+.++.+++.|++||.+-. ++++. +++.. .. ...|++.+
T Consensus 1 ~~~~~~~~~~d~~~~~~~~~~~~~~gv~gi~~~g-------------------~~i~~---~~~~~---~~~~~~v~~~v 55 (201)
T cd00945 1 IDLTLLHPDATLEDIAKLCDEAIEYGFAAVCVNP-------------------GYVRL---AADAL---AGSDVPVIVVV 55 (201)
T ss_pred CcccccCCCCCHHHHHHHHHHHHHhCCcEEEECH-------------------HHHHH---HHHHh---CCCCCeEEEEe
Confidence 3567889998889999999999999999998843 22333 33332 22 45667776
Q ss_pred cchh-cccHHHHHHHHHHHHhcCCCEEEeccC----CC------HHHHHHHHHhC-CCCCccceeeecCCCCCCCCHHH-
Q 010948 232 DSRQ-ALSLEESLRRSRAFADAGADVLFIDAL----AS------KEEMKAFCEIS-PLVPKMANMLEGGGKTPILNPLE- 298 (497)
Q Consensus 232 DA~~-~~~ldeaIeRAkAY~eAGAD~IfIeg~----~s------~eei~~i~~~v-~~vP~~~N~l~~~g~tP~lt~~e- 298 (497)
.+.. ....+++++.++.+.++|||++.+... ++ .+.++++++.. ...|+++-... +.+ ++.++
T Consensus 56 ~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p--~~~--~~~~~~ 131 (201)
T cd00945 56 GFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET--RGL--KTADEI 131 (201)
T ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC--CCC--CCHHHH
Confidence 6532 123799999999999999999988543 23 34555666664 23565543332 222 23333
Q ss_pred ------HHhcCCCEEeccc
Q 010948 299 ------LEELGFKLVAYPL 311 (497)
Q Consensus 299 ------L~elGv~~Vsyp~ 311 (497)
+.+.|+..|-...
T Consensus 132 ~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 132 AKAARIAAEAGADFIKTST 150 (201)
T ss_pred HHHHHHHHHhCCCEEEeCC
Confidence 2456777776543
No 64
>PLN02417 dihydrodipicolinate synthase
Probab=97.22 E-value=0.0075 Score=60.97 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
|.....+.++.+++.|+.||.+ ||+++.-...+.+|..+-++.+++... ..+-|++=+-+ ...+++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~ls~~Er~~~~~~~~~~~~---~~~pvi~gv~~---~~t~~~ 85 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIV--------GGTTGEGQLMSWDEHIMLIGHTVNCFG---GKIKVIGNTGS---NSTREA 85 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CccCcchhhCCHHHHHHHHHHHHHHhC---CCCcEEEECCC---ccHHHH
Confidence 5567889999999999999998 556666678889998888888777643 35556655543 356999
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHHHHHH
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFCE 273 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~~i~~ 273 (497)
+++++.++++|||++++..+ ++.+++.+.-+
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~ 120 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFE 120 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHH
Confidence 99999999999999988543 35566655443
No 65
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=97.19 E-value=0.011 Score=59.86 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+.....+.++.+++.|++||.+ ||+++.-...+.+|..+-++.++++.. .++-|++-+- . +.+++
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v--------~GstGE~~~Ls~eEr~~l~~~~~~~~~---~~~pvi~gv~---~-~t~~~ 83 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFA--------AGGTGEFFSLTPDEYAQVVRAAVEETA---GRVPVLAGAG---Y-GTATA 83 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhC---CCCCEEEecC---C-CHHHH
Confidence 5578899999999999999988 456666678899998888888887753 3454555442 2 56899
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHHHHH----HhCCCCCc-cceeeecCCCCCCCCHHHHHhc
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPK-MANMLEGGGKTPILNPLELEEL 302 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~~i~----~~v~~vP~-~~N~l~~~g~tP~lt~~eL~el 302 (497)
++.++.++++|||++++-.+ .+.+++.+.. +..+ +|+ +.| .++. .++.+.+.+|
T Consensus 84 i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~-~pi~lYn---~~g~--~l~~~~l~~L 146 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTD-LGVIVYN---RANA--VLTADSLARL 146 (289)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEe---CCCC--CCCHHHHHHH
Confidence 99999999999999987532 3556655444 4443 454 334 1221 3566665555
No 66
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.17 E-value=0.012 Score=60.53 Aligned_cols=122 Identities=24% Similarity=0.332 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
|.....+.++.+++.|++||.+ ||+++.-...+.+|..+-++.++++.. ...-|++=+-+ ...+|+
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~--------~GttGE~~~Ls~eEr~~v~~~~v~~~~---grvpviaG~g~---~~t~ea 88 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVV--------LGTTGESPTLTLEERKEVLEAVVEAVG---GRVPVIAGVGS---NSTAEA 88 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCccchhcCHHHHHHHHHHHHHHHC---CCCcEEEecCC---CcHHHH
Confidence 5678899999999999999988 666777778899999999999988864 23335555433 457999
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCH----HHHHHHHHhCCCCCcc-ceeeecCCC-CCCCCHHHHHhc
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASK----EEMKAFCEISPLVPKM-ANMLEGGGK-TPILNPLELEEL 302 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~----eei~~i~~~v~~vP~~-~N~l~~~g~-tP~lt~~eL~el 302 (497)
++.++.++++|||+|++-.+ ++. +..++++++.. +|.+ .|. |+. ...++.+.+.++
T Consensus 89 i~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~-lPvilYN~---P~~tg~~l~~e~i~~l 154 (299)
T COG0329 89 IELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVD-LPVILYNI---PSRTGVDLSPETIARL 154 (299)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcC-CCEEEEeC---ccccCCCCCHHHHHHH
Confidence 99999999999999987543 233 34556666663 5653 332 221 124666666555
No 67
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.16 E-value=0.023 Score=54.79 Aligned_cols=166 Identities=17% Similarity=0.134 Sum_probs=97.9
Q ss_pred HHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCc
Q 010948 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGa 179 (497)
--|+..+++|++++.+--.-.+ ..|.+ +..+.|.+.+++||++- ||.... +.++.+.++||
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~--~~g~~-----------~~~~~i~~~v~iPi~~~---~~i~~~---~~v~~~~~~Ga 95 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKY--FQGSL-----------EDLRAVREAVSLPVLRK---DFIIDP---YQIYEARAAGA 95 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCccc--cCCCH-----------HHHHHHHHhcCCCEEEC---CeecCH---HHHHHHHHcCC
Confidence 3568888899999965422211 11222 34555555568999973 344322 25678889999
Q ss_pred cEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEe
Q 010948 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (497)
Q Consensus 180 AGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfI 259 (497)
+||++ ++. ..+.+++.+-++.+ ...|.+.++-..+ .++++...+.|+|.+.+
T Consensus 96 d~v~l-~~~------------~~~~~~~~~~~~~~----~~~g~~~~v~v~~-----------~~e~~~~~~~g~~~i~~ 147 (217)
T cd00331 96 DAVLL-IVA------------ALDDEQLKELYELA----RELGMEVLVEVHD-----------EEELERALALGAKIIGI 147 (217)
T ss_pred CEEEE-eec------------cCCHHHHHHHHHHH----HHcCCeEEEEECC-----------HHHHHHHHHcCCCEEEE
Confidence 99998 332 22333332222222 3345555444332 23366677899999977
Q ss_pred ccC------CCHHHHHHHHHhCC-CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 260 DAL------ASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 260 eg~------~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
.+. ++.+.++++.+.+| .+| ++..+|-...-+..++.++|+.-|+.+..+++.
T Consensus 148 t~~~~~~~~~~~~~~~~l~~~~~~~~p----via~gGI~s~edi~~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 148 NNRDLKTFEVDLNTTERLAPLIPKDVI----LVSESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred eCCCccccCcCHHHHHHHHHhCCCCCE----EEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 632 24466777777653 233 333334322236788899999999999877653
No 68
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.16 E-value=0.0064 Score=59.62 Aligned_cols=177 Identities=18% Similarity=0.194 Sum_probs=101.6
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
-|+.++++|++.+++....-. ..+. ...+..++.|++.+++||+++. |..+...+ +.+.+.|++
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~--~~~~--------~~~~~~i~~i~~~~~~pv~~~G--GI~s~~d~----~~~l~~G~~ 95 (243)
T cd04731 32 LAKRYNEQGADELVFLDITAS--SEGR--------ETMLDVVERVAEEVFIPLTVGG--GIRSLEDA----RRLLRAGAD 95 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCcc--cccC--------cccHHHHHHHHHhCCCCEEEeC--CCCCHHHH----HHHHHcCCc
Confidence 457788899999988854321 0111 1145667788888899999873 23343333 455568999
Q ss_pred EEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC-e--EEEEe----------ccchhcccHHHHHHHHH
Q 010948 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD-I--VIVAR----------TDSRQALSLEESLRRSR 247 (497)
Q Consensus 181 GI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d-f--vIiAR----------TDA~~~~~ldeaIeRAk 247 (497)
+|.+--.. + -.+ +++.+|.... +.+ + -|-.| |+........++++.++
T Consensus 96 ~v~ig~~~------~------~~p-~~~~~i~~~~------~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~ 156 (243)
T cd04731 96 KVSINSAA------V------ENP-ELIREIAKRF------GSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAK 156 (243)
T ss_pred eEEECchh------h------hCh-HHHHHHHHHc------CCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHH
Confidence 99773221 1 122 3344442221 111 1 11112 11111122356788889
Q ss_pred HHHhcCCCEEEeccCCC--------HHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhc-CCCEEeccchHHHHH
Q 010948 248 AFADAGADVLFIDALAS--------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL-GFKLVAYPLSLIGVS 317 (497)
Q Consensus 248 AY~eAGAD~IfIeg~~s--------~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~el-Gv~~Vsyp~~ll~aa 317 (497)
.+.++|+|.|.+.++.. .+.++++.+.++ +|+.++ ||-...-+++++.+. |+..|+.+..++..-
T Consensus 157 ~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~-~pvia~----GGi~~~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 157 EVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVN-IPVIAS----GGAGKPEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred HHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCC-CCEEEe----CCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 99999999999877643 467788887764 565433 342211234555565 899998887666543
No 69
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=97.16 E-value=0.0064 Score=61.18 Aligned_cols=97 Identities=26% Similarity=0.366 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+.....+.++.+++.|++|+.+ ||+++.-...+.+|..+-++.++++.. .++.|++-+-+ ...+++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~--------~GstGE~~~Lt~~Er~~l~~~~~~~~~---~~~~vi~gv~~---~st~~~ 85 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVV--------LGSTGEFYSLTDEERKELLEIVVEAAA---GRVPVIAGVGA---NSTEEA 85 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEE--------SSTTTTGGGS-HHHHHHHHHHHHHHHT---TSSEEEEEEES---SSHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCcccccCCHHHHHHHHHHHHHHcc---CceEEEecCcc---hhHHHH
Confidence 4567889999999999999998 455666667888988888888887753 46666666544 357999
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHHHHHH
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFCE 273 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~~i~~ 273 (497)
|++++.++++|||++++-.+ .+.+++.+..+
T Consensus 86 i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~ 120 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIPPYYFKPSQEELIDYFR 120 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEeccccccchhhHHHHHHH
Confidence 99999999999999986433 46555554443
No 70
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=97.16 E-value=0.0097 Score=60.06 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=107.1
Q ss_pred Ccceeecccc-CCCccccccCcHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhh-------hhccc
Q 010948 56 GTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLAL 127 (497)
Q Consensus 56 r~~~~~R~y~-rgs~~i~~a~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSa-------s~lG~ 127 (497)
.||.+++||+ ||.- ...-+.|++..++-+..++-.+||..++..+++. .|++.++|.-+.. +..|.
T Consensus 60 ~~KpRtsp~s~~g~g-----~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gk 133 (260)
T TIGR01361 60 AFKPRTSPYSFQGLG-----EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGK 133 (260)
T ss_pred eecCCCCCccccccH-----HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCC
Confidence 5667777776 4332 3445667787777788888999999999999998 9999999765532 23466
Q ss_pred CC---CCCC-CHHHHHHHHHHHHh----------------------------------hcCcceEeeCCCCCCCHHHHHH
Q 010948 128 PD---TGFI-SYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKR 169 (497)
Q Consensus 128 PD---~g~l-tldEml~~~r~I~r----------------------------------a~~iPVIaD~DtGYG~~~~V~r 169 (497)
|= ++.- +++|+...+..|.. ..++||+.|.++.-|..+.+..
T Consensus 134 PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~ 213 (260)
T TIGR01361 134 PVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIP 213 (260)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHH
Confidence 53 3434 88998888777642 1368999999987665555555
Q ss_pred HHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHH
Q 010948 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (497)
Q Consensus 170 tVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv 215 (497)
..+.-+..||+|+.||=...|.+-- .+++.-++++++..-++.++
T Consensus 214 ~~~aAva~Ga~gl~iE~H~t~d~a~-~D~~~sl~p~~l~~lv~~i~ 258 (260)
T TIGR01361 214 LAKAAIAAGADGLMIEVHPDPEKAL-SDSKQQLTPEEFKRLVKELR 258 (260)
T ss_pred HHHHHHHcCCCEEEEEeCCCccccC-CcchhcCCHHHHHHHHHHHh
Confidence 5666778999999999776554322 45566677777766655443
No 71
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=97.15 E-value=0.011 Score=59.63 Aligned_cols=120 Identities=21% Similarity=0.193 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+.....+.++.+++.|++||.+ ||+++.-...+.+|-.+-++.++++. + . + ++-+- ....+++
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~--------~GstGE~~~Lt~eEr~~l~~~~~~~~---~-~-v-i~gvg---~~~~~~a 80 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFV--------AGTTGLGPSLSFQEKLELLKAYSDIT---D-K-V-IFQVG---SLNLEES 80 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEE--------cccCCCcccCCHHHHHHHHHHHHHHc---C-C-E-EEEeC---cCCHHHH
Confidence 5678999999999999999998 56667667889999988888887764 2 2 3 33332 2467999
Q ss_pred HHHHHHHHhcCCCEEEeccC-----CCHHHHHHHHHhCC-CCCcc-ceeeecCCCC-CCCCHHHHHhc
Q 010948 243 LRRSRAFADAGADVLFIDAL-----ASKEEMKAFCEISP-LVPKM-ANMLEGGGKT-PILNPLELEEL 302 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~-----~s~eei~~i~~~v~-~vP~~-~N~l~~~g~t-P~lt~~eL~el 302 (497)
+++|+.++++|||++++-.+ ++.+++.+.-+.+. .+|.+ .|. |..+ -.++.+.+.++
T Consensus 81 i~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~~lpv~iYn~---P~~tg~~l~~~~l~~L 145 (279)
T cd00953 81 IELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISSPYPTFIYNY---PKATGYDINARMAKEI 145 (279)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHhcCCEEEEeC---ccccCCCCCHHHHHHH
Confidence 99999999999999987322 35566655433221 24443 232 2211 14566555555
No 72
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=97.13 E-value=0.018 Score=57.49 Aligned_cols=122 Identities=26% Similarity=0.368 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+.....+.++.+++.|+.||.+ ||+++.-...+.+|..+-++.++++.. .++-|++-+-+ ...+|+
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~--------~GstGE~~~ls~~Er~~l~~~~~~~~~---~~~~vi~gv~~---~~~~~~ 81 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVV--------LGTTGEAPTLTDEERKEVIEAVVEAVA---GRVPVIAGVGA---NSTREA 81 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCcccccCCHHHHHHHHHHHHHHhC---CCCeEEEecCC---ccHHHH
Confidence 5578889999999999999988 566666678888998888888887753 34555554432 356899
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHHHHH----HhCCCCCcc-ceeeecCCC-CCCCCHHHHHhc
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPKM-ANMLEGGGK-TPILNPLELEEL 302 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~~i~----~~v~~vP~~-~N~l~~~g~-tP~lt~~eL~el 302 (497)
++.++.++++|||++++-.+ .+.+++.+.. +..+ .|.+ .|. |.. .-.++.+.+.++
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~-~pi~iYn~---P~~tg~~l~~~~~~~L 147 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASD-LPVILYNI---PGRTGVDLSPETIARL 147 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEEEC---ccccCCCCCHHHHHHH
Confidence 99999999999999988543 3455555443 4332 5553 222 211 124566666665
No 73
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=97.12 E-value=0.015 Score=59.18 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
|.....+.++.+++.|++||.+ ||+++.-..++.+|..+-++.++++.. ..+-|++-+-. ..+++
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v--------~GstGE~~~Lt~eEr~~v~~~~~~~~~---g~~pvi~gv~~----~t~~a 88 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFA--------AGGTGEFFSLTPAEYEQVVEIAVSTAK---GKVPVYTGVGG----NTSDA 88 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEE--------CCCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecCc----cHHHH
Confidence 5578899999999999999988 556666678899999888888887753 34555555532 47999
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHHH----HHHhCCCCCc-cceeeecCCCCCCCCHHHHHhc
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPK-MANMLEGGGKTPILNPLELEEL 302 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~~----i~~~v~~vP~-~~N~l~~~g~tP~lt~~eL~el 302 (497)
+++++.+.++|||++++-.+ .+.+++.+ ++++.+ +|+ +.| ..| . .++.+.+.+|
T Consensus 89 i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~-~pvilYn---~~g-~-~l~~~~~~~L 151 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTD-LGVIVYQ---RDN-A-VLNADTLERL 151 (296)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccC-CCEEEEe---CCC-C-CCCHHHHHHH
Confidence 99999999999999987443 35555444 444443 453 444 112 1 3566655555
No 74
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=97.10 E-value=0.012 Score=58.93 Aligned_cols=97 Identities=26% Similarity=0.364 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
|.....+.++.++++|+.||-+ ||+++.-...+.+|..+-++.++++.. .++.|++=+-+ ...+|+
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v--------~GstGE~~~lt~~Er~~l~~~~~~~~~---~~~~vi~gv~~---~~~~~~ 84 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVV--------CGTTGESPTLSDEEHEAVIEAVVEAVN---GRVPVIAGTGS---NNTAEA 84 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCcchhhCCHHHHHHHHHHHHHHhC---CCCcEEeccCC---ccHHHH
Confidence 5567889999999999999988 455565567888888888888887653 34555544322 357999
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHHHHHH
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFCE 273 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~~i~~ 273 (497)
+++|+.++++|||.|++-.+ .+.+++.++.+
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~ 119 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFK 119 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Confidence 99999999999999887533 35566655443
No 75
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=97.08 E-value=0.015 Score=58.68 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+.....+.++.+++.|++||.+ ||+++.-...+.+|-.+-++.++++.. ...-|++=+- ....+++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~Ls~~Er~~~~~~~~~~~~---~~~~vi~gv~---~~s~~~~ 82 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVV--------VGTTGESPTLSHEEHKKVIEFVVDLVN---GRVPVIAGTG---SNATEEA 82 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhC---CCCeEEEeCC---CccHHHH
Confidence 4567889999999999999988 566666678899998888888887653 2444554442 2357999
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHHHHH
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC 272 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~~i~ 272 (497)
+++++.++++|||+|++-.+ ++.+++.++.
T Consensus 83 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~ 116 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHF 116 (285)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHH
Confidence 99999999999999987543 3556665443
No 76
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=97.05 E-value=0.019 Score=57.95 Aligned_cols=123 Identities=22% Similarity=0.288 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+.....+.++.+++.|+.||.+ ||+++.-...+.+|-.+-++.++++.. .++-|++=+-+ .+.+++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~--------~Gs~GE~~~ls~~Er~~~~~~~~~~~~---~~~~vi~gv~~---~~~~~~ 85 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVV--------VGTTGESPTLTHEEHEELIRAVVEAVN---GRVPVIAGTGS---NSTAEA 85 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCcCCccccCCHHHHHHHHHHHHHHhC---CCCcEEeecCC---chHHHH
Confidence 4567889999999999999988 556666678888988888888887753 34545544322 357999
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHHHHH----HhCCCCCcc-ceeeecCCCCCCCCHHHHHhc
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPKM-ANMLEGGGKTPILNPLELEEL 302 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~~i~----~~v~~vP~~-~N~l~~~g~tP~lt~~eL~el 302 (497)
+++++.++++|||++++-.+ .+.+++.+.. +..+ .|++ .|.=.. .+. .++.+.+.++
T Consensus 86 i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~-~pv~lYn~P~~-~g~-~l~~~~~~~L 151 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATD-LPIILYNVPGR-TGV-DILPETVARL 151 (292)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEEECccc-cCC-CCCHHHHHHH
Confidence 99999999999999988433 3556655544 4443 4543 232111 111 3677666666
No 77
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.03 E-value=0.071 Score=55.70 Aligned_cols=198 Identities=15% Similarity=0.064 Sum_probs=109.1
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCC---------CC--------CCCHHHHHHHHHHHHhhcCcceEeeCCCCC--C
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPD---------TG--------FISYGEMVDQGQLITQAVSIPVIGDGDNGY--G 162 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD---------~g--------~ltldEml~~~r~I~ra~~iPVIaD~DtGY--G 162 (497)
.+.+..+||-++.+.+...- ...|.|. .+ ....+.++++.+... .++||||-+ .|. .
T Consensus 75 ~~~~~~~G~Gavv~ktvt~~-p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~--~~~pvivsI-~~~~~~ 150 (344)
T PRK05286 75 IDALGALGFGFVEVGTVTPR-PQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAY--RGIPLGINI-GKNKDT 150 (344)
T ss_pred HHHHHHcCCCEEEeCCcCCC-CCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhc--CCCcEEEEE-ecCCCC
Confidence 34556778888888765432 1234331 11 122466666655533 679999988 332 1
Q ss_pred ----CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCcc-ccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcc
Q 010948 163 ----NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK-VVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (497)
Q Consensus 163 ----~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~-lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~ 237 (497)
......+.++++.+ +|+++-|.=. |.|..+.. .-..+...+-+++++++......++-|..+.-.. .
T Consensus 151 ~~~~~~~d~~~~~~~~~~-~ad~lelN~s-----cP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~--~ 222 (344)
T PRK05286 151 PLEDAVDDYLICLEKLYP-YADYFTVNIS-----SPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPD--L 222 (344)
T ss_pred CcccCHHHHHHHHHHHHh-hCCEEEEEcc-----CCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC--C
Confidence 34566666666644 6888876532 66653322 3344445555555555543100035555665422 2
Q ss_pred cHHHHHHHHHHHHhcCCCEEEeccCC--------------------------CHHHHHHHHHhCC-CCCccceeeecCCC
Q 010948 238 SLEESLRRSRAFADAGADVLFIDALA--------------------------SKEEMKAFCEISP-LVPKMANMLEGGGK 290 (497)
Q Consensus 238 ~ldeaIeRAkAY~eAGAD~IfIeg~~--------------------------s~eei~~i~~~v~-~vP~~~N~l~~~g~ 290 (497)
..++..+-+++.+++|||.|.+.... +.+.++++.++++ .+|+. ..||-
T Consensus 223 ~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIi----g~GGI 298 (344)
T PRK05286 223 SDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPII----GVGGI 298 (344)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEE----EECCC
Confidence 34678888999999999999987521 1224555556553 24433 33342
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHH
Q 010948 291 TPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 291 tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
.-.-+..++-..|+..|..+..++.
T Consensus 299 ~s~eda~e~l~aGAd~V~v~~~~~~ 323 (344)
T PRK05286 299 DSAEDAYEKIRAGASLVQIYSGLIY 323 (344)
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2112344555568887766665543
No 78
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=97.02 E-value=0.045 Score=56.20 Aligned_cols=213 Identities=17% Similarity=0.213 Sum_probs=139.9
Q ss_pred HHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe
Q 010948 80 SLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (497)
Q Consensus 80 ~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa 155 (497)
-|++..+.+-.+.+.|+||.-+++. +|+.+.++|+-.+-.... .. +++.+...++.+++..++||.+
T Consensus 8 ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~-~~--------~~~~~~~~~~~~a~~~~vPVal 78 (287)
T PF01116_consen 8 LLKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVK-YM--------GLEYLAAMVKAAAEEASVPVAL 78 (287)
T ss_dssp HHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHH-HH--------HHHHHHHHHHHHHHHSTSEEEE
T ss_pred HHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhh-hh--------hHHHHHHHHHHHHHHcCCCEEe
Confidence 3444445555688889999999864 566799999877644331 11 6778888899999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----eEEEEec
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVIVART 231 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvIiART 231 (497)
=.|+|.. ...+++.+++|...|.|... -.|.+|-++.-+.+++-++..|.. +=-++..
T Consensus 79 HLDH~~~-----~e~i~~ai~~GftSVM~DgS-------------~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ 140 (287)
T PF01116_consen 79 HLDHGKD-----FEDIKRAIDAGFTSVMIDGS-------------ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGK 140 (287)
T ss_dssp EEEEE-S-----HHHHHHHHHHTSSEEEEE-T-------------TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSS
T ss_pred ecccCCC-----HHHHHHHHHhCcccccccCC-------------cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeecc
Confidence 9999964 55566677889999999443 346788888888888777654411 1011221
Q ss_pred -cchhc--------ccHHHHHHHHHHH-HhcCCCEEEec-----c------CC--CHHHHHHHHHhCCCCCccceeeecC
Q 010948 232 -DSRQA--------LSLEESLRRSRAF-ADAGADVLFID-----A------LA--SKEEMKAFCEISPLVPKMANMLEGG 288 (497)
Q Consensus 232 -DA~~~--------~~ldeaIeRAkAY-~eAGAD~IfIe-----g------~~--s~eei~~i~~~v~~vP~~~N~l~~~ 288 (497)
|.... .+. +.|+.| .+.|+|++=+- | .+ +.+.+++|.+.++.+|+ ++.|+
T Consensus 141 ed~~~~~~~~~~~~TdP----~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPL---VlHGg 213 (287)
T PF01116_consen 141 EDGIESEEETESLYTDP----EEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPL---VLHGG 213 (287)
T ss_dssp CTTCSSSTT-TTCSSSH----HHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEE---EESSC
T ss_pred CCCccccccccccccCH----HHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCE---EEECC
Confidence 11100 123 345555 48999998752 2 12 36788888888833665 45654
Q ss_pred CCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 289 GKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 289 g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
..+|.-.+.+.-++|+.-|=++..+..+.+.++++.+.
T Consensus 214 SG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~ 251 (287)
T PF01116_consen 214 SGLPDEQIRKAIKNGISKINIGTELRRAFTDALREYLA 251 (287)
T ss_dssp TTS-HHHHHHHHHTTEEEEEESHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCceEEEEehHHHHHHHHHHHHHHH
Confidence 44444445666778999999999999999988887755
No 79
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.01 E-value=0.018 Score=60.83 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=113.4
Q ss_pred CCCcceeecccc-CCCccccccCcHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhh-------hc
Q 010948 54 NPGTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAA-------RL 125 (497)
Q Consensus 54 ~pr~~~~~R~y~-rgs~~i~~a~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas-------~l 125 (497)
-.-|+.+++||+ ||. ....-+-|++..++-+..++-.+||.-++..+++. .|++.+++.-+-.. ..
T Consensus 134 ~g~~kpRtsp~sf~G~-----g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~lqIga~~~~n~~LL~~va~t 207 (352)
T PRK13396 134 GGAYKPRTSPYAFQGH-----GESALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVIQVGARNMQNFSLLKKVGAQ 207 (352)
T ss_pred eeeecCCCCCcccCCc-----hHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeEEECcccccCHHHHHHHHcc
Confidence 466777778887 441 12445567776667777888899999999999888 89999997655331 33
Q ss_pred ccCC---CCC-CCHHHHHHHHHHHHh-----------------------------------hcCcceEeeCCCCCCCHHH
Q 010948 126 ALPD---TGF-ISYGEMVDQGQLITQ-----------------------------------AVSIPVIGDGDNGYGNAMN 166 (497)
Q Consensus 126 G~PD---~g~-ltldEml~~~r~I~r-----------------------------------a~~iPVIaD~DtGYG~~~~ 166 (497)
|.|= .+. .|++|++..++.|.. .+++|||+|.=++-|....
T Consensus 208 ~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~ 287 (352)
T PRK13396 208 DKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEY 287 (352)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCCcHHH
Confidence 5553 233 488888888777732 2368999999986665555
Q ss_pred HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcC
Q 010948 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g 222 (497)
+....+.-+.+||+|+.||=...|.+-- .++..-++++++.+-++.++.....+|
T Consensus 288 ~~~~a~AAva~GAdGliIE~H~~pd~Al-sD~~qsl~p~~~~~l~~~i~~i~~~~g 342 (352)
T PRK13396 288 VPSMAMAAIAAGTDSLMIEVHPNPAKAL-SDGPQSLTPDRFDRLMQELAVIGKTVG 342 (352)
T ss_pred HHHHHHHHHhhCCCeEEEEecCCcccCC-ChhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 6667777889999999999876665432 266667777777666666665554433
No 80
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=97.00 E-value=0.029 Score=57.06 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=106.6
Q ss_pred eeecccc-CCCccccccCcHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchh-------hhhhhcccCC-
Q 010948 59 NRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFS-------ISAARLALPD- 129 (497)
Q Consensus 59 ~~~R~y~-rgs~~i~~a~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~a-------vSas~lG~PD- 129 (497)
.+++||+ ||. +++ ..-+-|++..+.-+.-++-.++|.-.+..+.+. .|.+.++..- .++...|.|=
T Consensus 54 pRTSp~sFqG~-G~e---eGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~-~DilQIgArn~rn~~LL~a~g~t~kpV~ 128 (264)
T PRK05198 54 NRSSIHSFRGP-GLE---EGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV-VDVLQIPAFLCRQTDLLVAAAKTGKVVN 128 (264)
T ss_pred CCCCCCCCCCC-ChH---HHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh-CcEEEECchhcchHHHHHHHhccCCeEE
Confidence 5678887 552 222 334566666666667777799999999999888 9999999632 2222334432
Q ss_pred ---CCCCCHHHHHHHHHHHHh-------------------------------hcCcceEeeCCCC-----------CCCH
Q 010948 130 ---TGFISYGEMVDQGQLITQ-------------------------------AVSIPVIGDGDNG-----------YGNA 164 (497)
Q Consensus 130 ---~g~ltldEml~~~r~I~r-------------------------------a~~iPVIaD~DtG-----------YG~~ 164 (497)
...++.+||+..++.|.. ..++|||+|.=++ -|..
T Consensus 129 lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k~~~lPVi~DpSHsvq~pg~~~~~s~G~r 208 (264)
T PRK05198 129 IKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRETGAPVIFDATHSVQLPGGQGGSSGGQR 208 (264)
T ss_pred ecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHhhCCCCEEEeCCccccCCCCCCCCCCCcH
Confidence 345899999999888853 1358999999886 4556
Q ss_pred HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH
Q 010948 165 MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD 216 (497)
Q Consensus 165 ~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~ 216 (497)
.-|.-.++.-+.+||+|+.||=...|. +.-.+|...++.+++.+-++.++.
T Consensus 209 ~~v~~la~AAvA~GadGl~iEvHpdP~-~AlsDg~q~l~~~~~~~ll~~l~~ 259 (264)
T PRK05198 209 EFVPVLARAAVAVGVAGLFIETHPDPD-NALSDGPNMLPLDKLEPLLEQLKA 259 (264)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcc-ccCCCccccCCHHHHHHHHHHHHH
Confidence 678888888899999999999765554 234567777777776665554443
No 81
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.99 E-value=0.015 Score=58.79 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=105.8
Q ss_pred Ccceeecccc-CCCccccccCcHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhh-------hhccc
Q 010948 56 GTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLAL 127 (497)
Q Consensus 56 r~~~~~R~y~-rgs~~i~~a~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSa-------s~lG~ 127 (497)
-|+.+++||+ ||. ....-+.|++..++-+..++-.+||.-++..+.+ ..|++.+++.-+.. +..|.
T Consensus 50 ~~kpRts~~sf~G~-----G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdilqIgs~~~~n~~LL~~va~tgk 123 (250)
T PRK13397 50 AYKPRTSAASFQGL-----GLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVIQVGARNMQNFEFLKTLSHIDK 123 (250)
T ss_pred ccCCCCCCcccCCC-----CHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEEEECcccccCHHHHHHHHccCC
Confidence 3556678887 442 1234456777666667778889999999999988 69999999765432 23466
Q ss_pred CC---CC-CCCHHHHHHHHHHHHh----------------------------------hcCcceEeeCCCCCCCHHHHHH
Q 010948 128 PD---TG-FISYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKR 169 (497)
Q Consensus 128 PD---~g-~ltldEml~~~r~I~r----------------------------------a~~iPVIaD~DtGYG~~~~V~r 169 (497)
|= .+ ..+++|+...++.|.. ..++|||+|.-+.-|..+-|..
T Consensus 124 PVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~ 203 (250)
T PRK13397 124 PILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLP 203 (250)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHH
Confidence 53 34 7888998888777742 2468999998876565556666
Q ss_pred HHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHH
Q 010948 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIK 212 (497)
Q Consensus 170 tVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIr 212 (497)
..+.-+.+||+|+.||=...|.+- -.+|...++.+++.+-++
T Consensus 204 ~a~AAvA~GAdGl~IE~H~~P~~A-~sD~~q~l~~~~l~~l~~ 245 (250)
T PRK13397 204 AAKIAKAVGANGIMMEVHPDPDHA-LSDAAQQIDYKQLEQLGQ 245 (250)
T ss_pred HHHHHHHhCCCEEEEEecCCcccc-cCchhhhCCHHHHHHHHH
Confidence 677778899999999987666544 346666777776655444
No 82
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.99 E-value=0.022 Score=60.25 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=109.6
Q ss_pred Ccceeecccc-CCCccccccCcHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhh-------hhccc
Q 010948 56 GTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLAL 127 (497)
Q Consensus 56 r~~~~~R~y~-rgs~~i~~a~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSa-------s~lG~ 127 (497)
-|+.+++||+ ||.- ...-+.|++..++-+..++-.+||.-++..+.+. .|++.++|.-+.. +.+|.
T Consensus 153 ~~kpRtsp~~f~g~~-----~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~gk 226 (360)
T PRK12595 153 AFKPRTSPYDFQGLG-----VEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRVNK 226 (360)
T ss_pred ccCCCCCCccccCCC-----HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCC
Confidence 4556667776 3322 2344567777777778888899999999999999 9999999865532 23566
Q ss_pred CC---CCC-CCHHHHHHHHHHHHh----------------------------------hcCcceEeeCCCCCCCHHHHHH
Q 010948 128 PD---TGF-ISYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKR 169 (497)
Q Consensus 128 PD---~g~-ltldEml~~~r~I~r----------------------------------a~~iPVIaD~DtGYG~~~~V~r 169 (497)
|= +|. .+++|+...+..|.. ..++||++|.++.-|....+..
T Consensus 227 PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~ 306 (360)
T PRK12595 227 PVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLP 306 (360)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHH
Confidence 64 454 689999888777742 2468999999987676555655
Q ss_pred HHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHH
Q 010948 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDAR 218 (497)
Q Consensus 170 tVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar 218 (497)
..+.-+.+||+|+.||=...|..-| .++..-++++++..-++.++.-.
T Consensus 307 ~a~aAva~GAdg~~iE~H~dp~~a~-~D~~~sl~p~el~~l~~~i~~~~ 354 (360)
T PRK12595 307 TAKAALAIGADGVMAEVHPDPAVAL-SDSAQQMDIPEFDRFLDELKPLA 354 (360)
T ss_pred HHHHHHHcCCCeEEEEecCCCCCCC-CchhhhCCHHHHHHHHHHHHHHH
Confidence 6667778999999999766554443 35566677777666555554443
No 83
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.99 E-value=0.021 Score=55.61 Aligned_cols=172 Identities=15% Similarity=0.212 Sum_probs=100.3
Q ss_pred ChHH-HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHH
Q 010948 98 DALS-AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (497)
Q Consensus 98 DalS-Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~ 176 (497)
|+.. |+..++.|++.+++.-..-. ..+.+ . .....+.+++.+++||+++. |..+... ++.+.+
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~--~~~~~----~----n~~~~~~i~~~~~~pv~~~g--gi~~~~d----~~~~~~ 94 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDAS--KRGRE----P----LFELISNLAEECFMPLTVGG--GIRSLED----AKKLLS 94 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCc--ccCCC----C----CHHHHHHHHHhCCCCEEEEC--CCCCHHH----HHHHHH
Confidence 4443 56778899999998743321 11111 1 23456777777889998862 2223333 334567
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh---------------cccHHH
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ---------------ALSLEE 241 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~---------------~~~lde 241 (497)
+|+.+|.+--.. +-.+ +.+.++. +. .+... |+.-.|... .....+
T Consensus 95 ~G~~~vilg~~~------------l~~~-~~~~~~~---~~---~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~ 154 (232)
T TIGR03572 95 LGADKVSINTAA------------LENP-DLIEEAA---RR---FGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRD 154 (232)
T ss_pred cCCCEEEEChhH------------hcCH-HHHHHHH---HH---cCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCC
Confidence 899999773221 1122 3333332 22 12232 222333211 011245
Q ss_pred HHHHHHHHHhcCCCEEEeccCCC--------HHHHHHHHHhCCCCCccceeeecCCCCCCCCHHH----HHhcCCCEEec
Q 010948 242 SLRRSRAFADAGADVLFIDALAS--------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE----LEELGFKLVAY 309 (497)
Q Consensus 242 aIeRAkAY~eAGAD~IfIeg~~s--------~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~e----L~elGv~~Vsy 309 (497)
.++.++.+.++|||.|.+.++.. .+.++++++.++ +|+. ..||- -+.++ |.+.|+..|+.
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~-ipvi----a~GGi---~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVS-IPVI----ALGGA---GSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCC-CCEE----EECCC---CCHHHHHHHHHHcCCCEEEE
Confidence 68889999999999999988533 578888888764 5654 33342 25555 78899999998
Q ss_pred cchH
Q 010948 310 PLSL 313 (497)
Q Consensus 310 p~~l 313 (497)
+..+
T Consensus 227 g~a~ 230 (232)
T TIGR03572 227 ASLF 230 (232)
T ss_pred ehhh
Confidence 7654
No 84
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.90 E-value=0.085 Score=54.67 Aligned_cols=182 Identities=16% Similarity=0.111 Sum_probs=108.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCH
Q 010948 125 LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSR 204 (497)
Q Consensus 125 lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ 204 (497)
.|++. ...+++++.++.+.+..++||++-+ .| .+.....+.++.++++|+++|.|-=...|...+.. |.. +.
T Consensus 79 ~gl~n---~g~d~~~~~i~~~~~~~~~pvi~sI-~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~-g~~--~~ 150 (334)
T PRK07565 79 PAKFY---VGPEEYLELIRRAKEAVDIPVIASL-NG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDIS-GAE--VE 150 (334)
T ss_pred hhccC---cCHHHHHHHHHHHHHhcCCcEEEEe-cc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCc-ccc--HH
Confidence 35544 4588889888888777789999988 33 24567778889999999999988443211111111 111 12
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCC-----CH--------------
Q 010948 205 EEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA-----SK-------------- 265 (497)
Q Consensus 205 ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~-----s~-------------- 265 (497)
+.+.+-|++++++. +.-|+++.-. .+++..+-+++.+++|||+|.+.... +.
T Consensus 151 ~~~~eil~~v~~~~-----~iPV~vKl~p----~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~ 221 (334)
T PRK07565 151 QRYLDILRAVKSAV-----SIPVAVKLSP----YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTP 221 (334)
T ss_pred HHHHHHHHHHHhcc-----CCcEEEEeCC----CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCc
Confidence 22444455554442 3334444211 23455677888999999999775421 11
Q ss_pred -------HHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHH
Q 010948 266 -------EEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328 (497)
Q Consensus 266 -------eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i 328 (497)
+.+.++.+.+. +|.. ..||-.-..+..+.-.+|...|-.+..++.-....++...+.|
T Consensus 222 ~~~~~al~~v~~~~~~~~-ipIi----g~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L 286 (334)
T PRK07565 222 AELRLPLRWIAILSGRVG-ADLA----ATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGL 286 (334)
T ss_pred hhhhHHHHHHHHHHhhcC-CCEE----EECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHH
Confidence 22333444442 4543 3345433345666777999999999888876445544444444
No 85
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=96.89 E-value=0.026 Score=57.72 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+.....+.++.+++.|++||.+ ||+++.-...+.+|-.+-+++++++.. ..+-|++=+. . ..+++
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~--------~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~---~-~t~~~ 90 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFA--------AGGTGEFFSLTPDEYSQVVRAAVETTA---GRVPVIAGAG---G-GTAQA 90 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecC---C-CHHHH
Confidence 4567899999999999999988 456666677889998888888887753 3455555442 2 57999
Q ss_pred HHHHHHHHhcCCCEEEeccC----CCHHHHHH----HHHhCCCCCc-cceeeecCCCCCCCCHHHHHhc
Q 010948 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPK-MANMLEGGGKTPILNPLELEEL 302 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~----~s~eei~~----i~~~v~~vP~-~~N~l~~~g~tP~lt~~eL~el 302 (497)
++.++.++++|||++++-.+ ++.+++.. +++..+ +|+ +.| .++ . .++.+.+.++
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~-lpi~lYn---~~g-~-~l~~~~l~~L 153 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTD-LGVIVYN---RDN-A-VLTADTLARL 153 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEc---CCC-C-CCCHHHHHHH
Confidence 99999999999999987543 35555544 445443 554 344 222 1 3566555555
No 86
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.88 E-value=0.12 Score=52.81 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCC-----Ccccc-CHHHH
Q 010948 135 YGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTR-----GRKVV-SREEA 207 (497)
Q Consensus 135 ldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~-----gk~lv-p~ee~ 207 (497)
++..++..+.+.+.. +.|+|+-.=.+ .++....+.++.++++|+++|-|-=. |.|.. |..+. ..+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~i~si~G~-~~~~~~~~~a~~~~~~gad~ielN~s-----CP~~~~~~~~G~~l~~~~~~~ 156 (299)
T cd02940 83 LEYWLKEIRELKKDFPDKILIASIMCE-YNKEDWTELAKLVEEAGADALELNFS-----CPHGMPERGMGAAVGQDPELV 156 (299)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEECC-----CCCCCCCCCCchhhccCHHHH
Confidence 556666666665554 48888765322 26678889999999899999988543 43331 22222 34444
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEe
Q 010948 208 VMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (497)
Q Consensus 208 ~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfI 259 (497)
.+-+++++++. +.++.+--|- .+++..+-+++.+++|||.|.+
T Consensus 157 ~~iv~~v~~~~---~~Pv~vKl~~------~~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 157 EEICRWVREAV---KIPVIAKLTP------NITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred HHHHHHHHHhc---CCCeEEECCC------CchhHHHHHHHHHHcCCCEEEE
Confidence 44444444432 2455554443 2356677788889999999973
No 87
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=96.88 E-value=0.038 Score=55.65 Aligned_cols=167 Identities=21% Similarity=0.164 Sum_probs=98.5
Q ss_pred hHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCC-CHHHHHHHHHHHHHh
Q 010948 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRTVKGYIKA 177 (497)
Q Consensus 99 alSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG-~~~~V~rtVk~l~~A 177 (497)
.--|+.++++|++++.+- .-|+.-.=+ ++.++.|++.+++||+. -| |- ++. .+....++
T Consensus 73 ~~~A~~~~~~GA~aisvl---------te~~~f~g~----~~~l~~v~~~v~iPvl~-kd--fi~~~~----qi~~a~~~ 132 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVL---------TDERFFQGS----LEYLRAARAAVSLPVLR-KD--FIIDPY----QIYEARAA 132 (260)
T ss_pred HHHHHHHHhCCCeEEEEe---------cccccCCCC----HHHHHHHHHhcCCCEEe-ee--ecCCHH----HHHHHHHc
Confidence 455778888999998442 222211111 45566677778999997 23 44 333 35666789
Q ss_pred CccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 178 GaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
||++|++-... .+.+ .++..++..+.+| +-+++-+.. .+|+ +...++|||.|
T Consensus 133 GAD~VlLi~~~-------------l~~~----~l~~li~~a~~lG--l~~lvevh~-----~~E~----~~A~~~gadiI 184 (260)
T PRK00278 133 GADAILLIVAA-------------LDDE----QLKELLDYAHSLG--LDVLVEVHD-----EEEL----ERALKLGAPLI 184 (260)
T ss_pred CCCEEEEEecc-------------CCHH----HHHHHHHHHHHcC--CeEEEEeCC-----HHHH----HHHHHcCCCEE
Confidence 99999995432 1222 3444444444444 333333222 2333 33457899999
Q ss_pred EeccC------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 258 FIDAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 258 fIeg~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
-+... ++.+...++.+.+|. ...-+.++|..+| -+..++.++|+.-|..|..++++
T Consensus 185 gin~rdl~~~~~d~~~~~~l~~~~p~--~~~vIaegGI~t~-ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 185 GINNRNLKTFEVDLETTERLAPLIPS--DRLVVSESGIFTP-EDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred EECCCCcccccCCHHHHHHHHHhCCC--CCEEEEEeCCCCH-HHHHHHHHcCCCEEEECHHHcCC
Confidence 88751 345667777776653 1112334433332 34567888999999999987764
No 88
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.85 E-value=0.16 Score=52.57 Aligned_cols=198 Identities=15% Similarity=0.121 Sum_probs=106.8
Q ss_pred HHHHHhCCcEEEecchhhhhhhcccCC---------CC--------CCCHHHHHHHHHHHHhhcCcceEeeCCCCCC---
Q 010948 103 KLVEKSGFSFCFTSGFSISAARLALPD---------TG--------FISYGEMVDQGQLITQAVSIPVIGDGDNGYG--- 162 (497)
Q Consensus 103 riae~aGfdAI~vSG~avSas~lG~PD---------~g--------~ltldEml~~~r~I~ra~~iPVIaD~DtGYG--- 162 (497)
+.+.++||-++.+.+.... ...|.|- .+ ....+.++...+.... .+.||++-+ .|..
T Consensus 66 ~~~~~~G~Gavv~ktit~~-~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~-~~~plivsi-~g~~~~~ 142 (327)
T cd04738 66 DALLALGFGFVEVGTVTPR-PQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRP-RGGPLGVNI-GKNKDTP 142 (327)
T ss_pred HHHHHCCCcEEEEeccCCC-CCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhcc-CCCeEEEEE-eCCCCCc
Confidence 3334678877777765432 1223321 01 1235666666665433 579999988 3332
Q ss_pred ---CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCc-cccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhccc
Q 010948 163 ---NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGR-KVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALS 238 (497)
Q Consensus 163 ---~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk-~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ 238 (497)
......+.++++.. +|++|-|. .+ |.|..|. .....+.+.+-+++++++...++.++-|..+.-.. ..
T Consensus 143 ~~~~~~d~~~~~~~~~~-~ad~ielN--~s---cP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~--~~ 214 (327)
T cd04738 143 LEDAVEDYVIGVRKLGP-YADYLVVN--VS---SPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD--LS 214 (327)
T ss_pred ccccHHHHHHHHHHHHh-hCCEEEEE--CC---CCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC--CC
Confidence 12445555555543 47777654 32 5555332 23445555566666666543222234455555321 23
Q ss_pred HHHHHHHHHHHHhcCCCEEEeccCC--------------------------CHHHHHHHHHhCC-CCCccceeeecCCCC
Q 010948 239 LEESLRRSRAFADAGADVLFIDALA--------------------------SKEEMKAFCEISP-LVPKMANMLEGGGKT 291 (497)
Q Consensus 239 ldeaIeRAkAY~eAGAD~IfIeg~~--------------------------s~eei~~i~~~v~-~vP~~~N~l~~~g~t 291 (497)
.++..+-+++.+++|||.|.+.... ..+.+.++.+.++ .+|+. ..||-.
T Consensus 215 ~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi----~~GGI~ 290 (327)
T cd04738 215 DEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPII----GVGGIS 290 (327)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEE----EECCCC
Confidence 4677888999999999999875421 1345556666553 24433 223422
Q ss_pred CCCCHHHHHhcCCCEEeccchHHH
Q 010948 292 PILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 292 P~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
-.-+..++-..|...|-.+..++.
T Consensus 291 t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 291 SGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred CHHHHHHHHHcCCCHHhccHHHHh
Confidence 112345555568877777665544
No 89
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.85 E-value=0.055 Score=56.06 Aligned_cols=203 Identities=14% Similarity=0.116 Sum_probs=116.0
Q ss_pred ceeec--ccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCC-CHHH
Q 010948 90 VHQGP--ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMN 166 (497)
Q Consensus 90 ~iv~p--~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG-~~~~ 166 (497)
.+.+| |+=|...-+++.+.|.+..|+-- +++..+-+. .+.. ........-..|+++-+ +| ++..
T Consensus 12 ~~lAPM~g~td~~fR~l~~~~g~~~~~tem--vs~~~~~~~-------~~~~-~~~~~~~~~~~~~~vQl---~g~~~~~ 78 (321)
T PRK10415 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEM--MSSNPQVWE-------SDKS-RLRMVHIDEPGIRTVQI---AGSDPKE 78 (321)
T ss_pred EEecCCCCCCcHHHHHHHHHHCCCEEEEcc--EEcchhhhc-------CHhH-HHHhccCccCCCEEEEE---eCCCHHH
Confidence 44444 88999999999999997766431 111111110 0100 00000111125665544 56 5778
Q ss_pred HHHHHHHHHHhCccEEEecCCC-CCCCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHH
Q 010948 167 VKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLR 244 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIe 244 (497)
..++++.+.+.|+++|.|-=+- .+|.+.+..|-.+. .++...+-+++++++. +.++.+--|..- ....+++++
T Consensus 79 ~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~---d~pv~vKiR~G~--~~~~~~~~~ 153 (321)
T PRK10415 79 MADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV---DVPVTLKIRTGW--APEHRNCVE 153 (321)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc---CCceEEEEEccc--cCCcchHHH
Confidence 8899988888999999997664 23344443454444 3444444444444432 223444444321 112246788
Q ss_pred HHHHHHhcCCCEEEeccC---------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHh-cCCCEEeccchHH
Q 010948 245 RSRAFADAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEE-LGFKLVAYPLSLI 314 (497)
Q Consensus 245 RAkAY~eAGAD~IfIeg~---------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~e-lGv~~Vsyp~~ll 314 (497)
-++.++++|+|.|.+++. .+-+.++++.+.++ +|+..| |+-...-+.+++.+ .|+..|..+-.++
T Consensus 154 ~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~-iPVI~n----GgI~s~~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 154 IAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS-IPVIAN----GDITDPLKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred HHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcC-CcEEEe----CCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence 889999999999999864 23456777777765 676554 33221113355554 6999999986655
Q ss_pred H
Q 010948 315 G 315 (497)
Q Consensus 315 ~ 315 (497)
.
T Consensus 229 ~ 229 (321)
T PRK10415 229 G 229 (321)
T ss_pred c
Confidence 4
No 90
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.78 E-value=0.53 Score=49.12 Aligned_cols=218 Identities=13% Similarity=0.120 Sum_probs=143.3
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-cc
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IP 152 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-iP 152 (497)
.+-|....+.+-.+-+.|+||.-+++. +|+.+.++|+-.+-+.. . ...++.+...++.+++..+ +|
T Consensus 6 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~----~-----~~g~~~~~~~~~~~a~~~~~VP 76 (307)
T PRK05835 6 NEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAI----K-----YMGIDMAVGMVKIMCERYPHIP 76 (307)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHH----h-----hCChHHHHHHHHHHHHhcCCCe
Confidence 345666666666788999999999865 46678999987654321 1 2335567778888888775 99
Q ss_pred eEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----eEEE
Q 010948 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVIV 228 (497)
Q Consensus 153 VIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvIi 228 (497)
|.+=.|+|. + .+.+++.+++|...|.+... | .|.||-+++-+.+++-++..|.. +=.+
T Consensus 77 ValHLDHg~-~----~e~i~~ai~~GftSVM~DgS-------~------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (307)
T PRK05835 77 VALHLDHGT-T----FESCEKAVKAGFTSVMIDAS-------H------HAFEENLELTSKVVKMAHNAGVSVEAELGRL 138 (307)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 999999995 3 34456678899999999443 3 46788888888888777643311 1111
Q ss_pred Eec-cchhcccHHH---HHHHHHHHHh-cCCCEEEe-----ccC--------CCHHHHHHHHHhCCCCCccceeeecCCC
Q 010948 229 ART-DSRQALSLEE---SLRRSRAFAD-AGADVLFI-----DAL--------ASKEEMKAFCEISPLVPKMANMLEGGGK 290 (497)
Q Consensus 229 ART-DA~~~~~lde---aIeRAkAY~e-AGAD~IfI-----eg~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~ 290 (497)
+-. |......-+. -.+.|+.|.+ .|+|++=+ +|. -+.+.+++|.+.++ +|+ +|.++..
T Consensus 139 gg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~-iPL---VLHGgSG 214 (307)
T PRK05835 139 MGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN-IPL---VLHGASA 214 (307)
T ss_pred CCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhC-CCE---EEeCCCC
Confidence 111 1100000000 1255666764 69998754 332 13577888888774 675 5666545
Q ss_pred CCCC---------------------CHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 291 TPIL---------------------NPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 291 tP~l---------------------t~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
.|.- .+.+.-++|++-|=+..-+..+...++++.+.
T Consensus 215 ip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~ 271 (307)
T PRK05835 215 IPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVAN 271 (307)
T ss_pred CchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHH
Confidence 5542 34555678999999999999999999988864
No 91
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.77 E-value=0.084 Score=52.75 Aligned_cols=200 Identities=13% Similarity=0.084 Sum_probs=117.3
Q ss_pred ccCChHHHHHHHHhCCcEEEecchhhh-----hh----hccc----CCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCC
Q 010948 95 ACFDALSAKLVEKSGFSFCFTSGFSIS-----AA----RLAL----PDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGY 161 (497)
Q Consensus 95 ~ayDalSAriae~aGfdAI~vSG~avS-----as----~lG~----PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGY 161 (497)
|.-|+--++-... .|..+.++|+..= |+ .-|- +|.+. +.+.+-.....+. ...|+++-+ ||
T Consensus 3 g~~d~~~~~~~~~-~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~-~~~~i~~e~~~~~--~~~~vivnv--~~ 76 (231)
T TIGR00736 3 GITDAEFCRKFKD-LFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEE-FNSYIIEQIKKAE--SRALVSVNV--RF 76 (231)
T ss_pred CcchHHHHHhcCc-CcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCccc-HHHHHHHHHHHHh--hcCCEEEEE--ec
Confidence 3344444444322 3777777776531 11 1243 33222 2233333344442 356888864 45
Q ss_pred CCHHHHHHHHHHHHHhCccEEEecCCC-CCCCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccH
Q 010948 162 GNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (497)
Q Consensus 162 G~~~~V~rtVk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~l 239 (497)
.+++...+.++.+.+ ++++|-|-=.- .||.|.+-.|..|. .++.+.+-+++++. .+.++.+-=|..- .-
T Consensus 77 ~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~----~~~PVsvKiR~~~----~~ 147 (231)
T TIGR00736 77 VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE----LNKPIFVKIRGNC----IP 147 (231)
T ss_pred CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc----CCCcEEEEeCCCC----Cc
Confidence 577888888888765 89999886553 23445444455444 55555555555542 2456666666532 12
Q ss_pred HHHHHHHHHHHhcCCCEEEeccCC------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 010948 240 EESLRRSRAFADAGADVLFIDALA------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (497)
Q Consensus 240 deaIeRAkAY~eAGAD~IfIeg~~------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~l 313 (497)
++.++-+++.+++|||.|-|+... +.+.++++.+.++.+|+..| ++-.-.-+..++.+.|...|..+-.+
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgN----GgI~s~eda~e~l~~GAd~VmvgR~~ 223 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGN----NSIDDIESAKEMLKAGADFVSVARAI 223 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEE----CCcCCHHHHHHHHHhCCCeEEEcHhh
Confidence 467888999999999999998653 35678888887754676544 34222224455566788888776543
No 92
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=96.77 E-value=0.71 Score=48.91 Aligned_cols=224 Identities=13% Similarity=0.151 Sum_probs=147.2
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-Ccce
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPV 153 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPV 153 (497)
+-|....+.+-.+.+.|+|+.-+++. +|+.+.+.|+..+-+.. ....++.+...++.+++.. ++||
T Consensus 8 ~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~---------~~~g~~~~~~~v~~~ae~~~~VPV 78 (347)
T PRK13399 8 QLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGAR---------KYAGDAMLRHMVLAAAEMYPDIPI 78 (347)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchh---------hhCCHHHHHHHHHHHHHhcCCCcE
Confidence 44555566666688999999999965 46679999987754421 1233556777788888777 4999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCC-CCccccCHHHHHHHHHHHHHHHHhcCCC----eEEE
Q 010948 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT-RGRKVVSREEAVMRIKAAVDARKESGSD----IVIV 228 (497)
Q Consensus 154 IaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~-~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvIi 228 (497)
.+=.|+|. +. ..+++.+++|...|.|... |. +++.-.|.||-+++-+.+++.++..|.. +=.+
T Consensus 79 aLHLDHg~-~~----e~i~~Ai~~GFtSVMiDgS-------~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~i 146 (347)
T PRK13399 79 CLHQDHGN-SP----ATCQSAIRSGFTSVMMDGS-------LLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCL 146 (347)
T ss_pred EEECCCCC-CH----HHHHHHHhcCCCEEEEeCC-------CCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeec
Confidence 99999996 33 3456777899999999543 43 2555678999999988888887654421 1112
Q ss_pred Eec--------cchhccc------HHHHHHHHHHHHh-cCCCEEEe-----ccCC-----------CHHHHHHHHHhCCC
Q 010948 229 ART--------DSRQALS------LEESLRRSRAFAD-AGADVLFI-----DALA-----------SKEEMKAFCEISPL 277 (497)
Q Consensus 229 ART--------DA~~~~~------ldeaIeRAkAY~e-AGAD~IfI-----eg~~-----------s~eei~~i~~~v~~ 277 (497)
+.. |...... +----+.|+.|.+ -|+|++-+ +|+. +.+.+++|.+.++.
T Consensus 147 gg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~ 226 (347)
T PRK13399 147 GSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPN 226 (347)
T ss_pred cCcccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCC
Confidence 221 1100000 0001345666664 69998753 3331 24578888888754
Q ss_pred CCccceeeecCCCCC------------------CCCHHHHH---hcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 278 VPKMANMLEGGGKTP------------------ILNPLELE---ELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 278 vP~~~N~l~~~g~tP------------------~lt~~eL~---elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
+|+ +|.++..+| .++.++++ ++|++-|=+..-+..+.+.++++.+.
T Consensus 227 vPL---VLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~ 293 (347)
T PRK13399 227 THL---VMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLA 293 (347)
T ss_pred CCE---EEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHH
Confidence 675 466544444 23345554 67999999999999999999988864
No 93
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=96.74 E-value=0.96 Score=47.50 Aligned_cols=222 Identities=14% Similarity=0.130 Sum_probs=142.8
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc--Cc
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SI 151 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAria----e~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~--~i 151 (497)
..-|.+..+.+-.+-+.|+|+.-+++.+ |+.+.++|+-.+-+.. .|. +.-.+..+...++..++.. ++
T Consensus 13 k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~----~~~--g~~~~~~~~~~~~~~a~~a~~~V 86 (321)
T PRK07084 13 REMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGAR----KYA--NATLLRYMAQGAVEYAKELGCPI 86 (321)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHH----hhC--CchHHHHHHHHHHHHHHHcCCCC
Confidence 3456665666666889999999998654 5668999887754421 221 1112455777777777765 79
Q ss_pred ceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----eEE
Q 010948 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVI 227 (497)
Q Consensus 152 PVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvI 227 (497)
||.+=.|+|. + .+.+++.+++|...|.|... | .|.+|-++.-+.+++.++..|.. +=-
T Consensus 87 PV~lHLDHg~-~----~e~i~~ai~~GftSVMiD~S-------~------lp~eeNI~~T~evv~~Ah~~GvsVEaElG~ 148 (321)
T PRK07084 87 PIVLHLDHGD-S----FELCKDCIDSGFSSVMIDGS-------H------LPYEENVALTKKVVEYAHQFDVTVEGELGV 148 (321)
T ss_pred cEEEECCCCC-C----HHHHHHHHHcCCCEEEeeCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 9999999984 3 33456778899999999442 3 36788888888888777654311 111
Q ss_pred EEe-ccchhccc-HHHHHHHHHHHHh-cCCCEEEe-----ccC-----------CCHHHHHHHHHhCCCCCccceeeecC
Q 010948 228 VAR-TDSRQALS-LEESLRRSRAFAD-AGADVLFI-----DAL-----------ASKEEMKAFCEISPLVPKMANMLEGG 288 (497)
Q Consensus 228 iAR-TDA~~~~~-ldeaIeRAkAY~e-AGAD~IfI-----eg~-----------~s~eei~~i~~~v~~vP~~~N~l~~~ 288 (497)
++- .|...... +----+.|+.|.+ -|+|++-+ +|. -+.+.+++|.+.++.+|+ ++.++
T Consensus 149 igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPL---VLHGg 225 (321)
T PRK07084 149 LAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPI---VLHGS 225 (321)
T ss_pred ecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCE---EEeCC
Confidence 111 11100000 0001345666664 69998764 333 135778888888754675 56664
Q ss_pred CCCC------------------CCCHHHHH---hcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 289 GKTP------------------ILNPLELE---ELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 289 g~tP------------------~lt~~eL~---elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
..+| .++.++++ ++|++-|=+..-+..+.+.++++.+.
T Consensus 226 Sg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~l~ 284 (321)
T PRK07084 226 SSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRLAMTAAIRKVFD 284 (321)
T ss_pred CCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHHHHHHHHHHHHHHH
Confidence 4344 45666665 67999999999999999999988864
No 94
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.73 E-value=0.03 Score=58.20 Aligned_cols=202 Identities=16% Similarity=0.052 Sum_probs=114.9
Q ss_pred ceeec--ccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHh-hcCcceEeeCCCCCC-CHH
Q 010948 90 VHQGP--ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ-AVSIPVIGDGDNGYG-NAM 165 (497)
Q Consensus 90 ~iv~p--~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~r-a~~iPVIaD~DtGYG-~~~ 165 (497)
.+.+| |.=|..-=+++.+.|...++.|-+-.+ .++--.. ...+ +.. ....|+++-+ +| +++
T Consensus 13 ~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~---~~l~~~~---~~~~------l~~~~~e~p~~vQl---~g~~p~ 77 (333)
T PRK11815 13 FSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTT---GAIIHGD---RERL------LAFDPEEHPVALQL---GGSDPA 77 (333)
T ss_pred EEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEe---ccccccC---HHHH------hccCCCCCcEEEEE---eCCCHH
Confidence 44444 777888878888888744444433322 1111111 1111 111 2247887764 44 578
Q ss_pred HHHHHHHHHHHhCccEEEecCCC-CCCCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHH
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESL 243 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaI 243 (497)
...++++.+.++|++||.|--+- .++.+....|-.+. .++...+-+++++++. +.++.+--|.-.......++++
T Consensus 78 ~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v---~~pVsvKiR~g~~~~~t~~~~~ 154 (333)
T PRK11815 78 DLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV---SIPVTVKHRIGIDDQDSYEFLC 154 (333)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc---CCceEEEEEeeeCCCcCHHHHH
Confidence 88999999999999999997653 12333222233333 4444444445444432 2233332242211122357788
Q ss_pred HHHHHHHhcCCCEEEeccCC-----------------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhc--CC
Q 010948 244 RRSRAFADAGADVLFIDALA-----------------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL--GF 304 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIeg~~-----------------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~el--Gv 304 (497)
+-++.++++|+|+|.+++-. +.+.++++.+.++.+|+..| |+- .+.++..++ |+
T Consensus 155 ~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~n----GgI---~s~eda~~~l~~a 227 (333)
T PRK11815 155 DFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEIN----GGI---KTLEEAKEHLQHV 227 (333)
T ss_pred HHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEE----CCc---CCHHHHHHHHhcC
Confidence 99999999999999998532 25577788777655676544 332 244443332 68
Q ss_pred CEEeccchHHHH
Q 010948 305 KLVAYPLSLIGV 316 (497)
Q Consensus 305 ~~Vsyp~~ll~a 316 (497)
..|..+-.++.-
T Consensus 228 DgVmIGRa~l~n 239 (333)
T PRK11815 228 DGVMIGRAAYHN 239 (333)
T ss_pred CEEEEcHHHHhC
Confidence 888877665543
No 95
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.73 E-value=0.12 Score=52.31 Aligned_cols=156 Identities=16% Similarity=0.122 Sum_probs=88.2
Q ss_pred hHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHh
Q 010948 99 ALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (497)
Q Consensus 99 alSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~A 177 (497)
.-.|+.++++|||+|=+- +.-.. . +.-+.-.-+.+.+.+.+++|.+.+++||++-+-.. ..++.+.++.++++
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~--~-~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~---~~~~~~~a~~~~~~ 178 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNV--K-GGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN---VTDIVEIARAAEEA 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCC--C-CCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC---chhHHHHHHHHHHc
Confidence 445677888999999775 32211 1 11111123456677778888888899999986422 23567778889999
Q ss_pred CccEEEecCCCC----------C---CCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHH
Q 010948 178 GFAGIILEDQVS----------P---KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLR 244 (497)
Q Consensus 178 GaAGI~IEDq~~----------p---KrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIe 244 (497)
||++|.+-.... | ..+|...|..+.|. ..+-++.++++ .+.+++.++.-.. -+
T Consensus 179 G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~--~~~~i~~i~~~---~~ipii~~GGI~~---------~~ 244 (296)
T cd04740 179 GADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPI--ALRMVYQVYKA---VEIPIIGVGGIAS---------GE 244 (296)
T ss_pred CCCEEEEECCCcccccccccCceeecCCcceecCcccchH--HHHHHHHHHHh---cCCCEEEECCCCC---------HH
Confidence 999998743211 1 01122334333332 22333333332 2344555444322 24
Q ss_pred HHHHHHhcCCCEEEecc--CCCHHHHHHHHHh
Q 010948 245 RSRAFADAGADVLFIDA--LASKEEMKAFCEI 274 (497)
Q Consensus 245 RAkAY~eAGAD~IfIeg--~~s~eei~~i~~~ 274 (497)
.+..+.++|||+|.+-. +.++..+.++.+.
T Consensus 245 da~~~l~~GAd~V~igra~l~~p~~~~~i~~~ 276 (296)
T cd04740 245 DALEFLMAGASAVQVGTANFVDPEAFKEIIEG 276 (296)
T ss_pred HHHHHHHcCCCEEEEchhhhcChHHHHHHHHH
Confidence 56667789999998732 2345555555554
No 96
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.71 E-value=0.073 Score=54.66 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=103.4
Q ss_pred eeecccc-CCCccccccCcHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchh-------hhhhhcccCC-
Q 010948 59 NRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFS-------ISAARLALPD- 129 (497)
Q Consensus 59 ~~~R~y~-rgs~~i~~a~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~a-------vSas~lG~PD- 129 (497)
++++||+ ||. +++ ..-+-|++..+.-+.-++-.++|.-.+..+.+. .|.+.++.+- .++...|.|=
T Consensus 60 pRTSp~sFqG~-G~e---eGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~-vDilQIgAr~~rntdLL~a~~~t~kpV~ 134 (281)
T PRK12457 60 NRSSIHSYRGV-GLD---EGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV-ADVLQVPAFLARQTDLVVAIAKTGKPVN 134 (281)
T ss_pred CCCCCCCCCCC-CHH---HHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh-CeEEeeCchhhchHHHHHHHhccCCeEE
Confidence 4678887 552 222 334566666666667777799999999998888 9999999632 2222334442
Q ss_pred ---CCCCCHHHHHHHHHHHHh-------------------------------h--cCcceEeeCCCC-----------CC
Q 010948 130 ---TGFISYGEMVDQGQLITQ-------------------------------A--VSIPVIGDGDNG-----------YG 162 (497)
Q Consensus 130 ---~g~ltldEml~~~r~I~r-------------------------------a--~~iPVIaD~DtG-----------YG 162 (497)
+..++.+||+..++.|.. . +++|||+|.=++ -|
T Consensus 135 lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G 214 (281)
T PRK12457 135 IKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGG 214 (281)
T ss_pred ecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCC
Confidence 345888999998887743 1 368999999885 45
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrA 213 (497)
..+-|...++.-+.+||+|+.||=...|. +.-.+|...++.+++.+-++.
T Consensus 215 ~re~v~~larAAvA~GaDGl~iEvHpdP~-~AlsDg~q~l~~~~~~~l~~~ 264 (281)
T PRK12457 215 RRRQVLDLARAGMAVGLAGLFLEAHPDPD-RARCDGPSALPLDQLEPFLSQ 264 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEecCCcc-ccCCCcccccCHHHHHHHHHH
Confidence 56678888888899999999999766554 334567777777655443333
No 97
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.051 Score=56.56 Aligned_cols=206 Identities=22% Similarity=0.151 Sum_probs=125.9
Q ss_pred CCCceeec--ccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCC-HHHHHHHHHHHHhhcCcceEeeCCCCCCC
Q 010948 87 LPGVHQGP--ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFIS-YGEMVDQGQLITQAVSIPVIGDGDNGYGN 163 (497)
Q Consensus 87 ~~~~iv~p--~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~lt-ldEml~~~r~I~ra~~iPVIaD~DtGYG~ 163 (497)
.+..+.+| |.-|...=+++.+.|...++.|=.-.+ ..+-+++...+- +++. ....|+++=+ +-++
T Consensus 10 ~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~-~~~~~~~~~~~~~~~~~---------~~e~p~~vQl--~gsd 77 (323)
T COG0042 10 RNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSA-KALLHGRKKFLLLLDEL---------EEERPVAVQL--GGSD 77 (323)
T ss_pred cCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEE-hhhccCCcchhhhcCcC---------CCCCCEEEEe--cCCC
Confidence 34455555 889999988888877733443421111 112222221111 1110 1235554432 2236
Q ss_pred HHHHHHHHHHHHHhCccEEEecCCC-CCCCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHH-
Q 010948 164 AMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE- 240 (497)
Q Consensus 164 ~~~V~rtVk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ld- 240 (497)
+....++++...+.|+++|.|-=+- .||.+.+..|-.|. .++.+.+-|+|++++.. ..+.-|-=|+--. ..+
T Consensus 78 p~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~--~iPVTVKiRlG~d---~~~~ 152 (323)
T COG0042 78 PELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG--DIPVTVKIRLGWD---DDDI 152 (323)
T ss_pred HHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC--CCCeEEEEecccC---cccc
Confidence 8889999999999999999998776 46677766676655 66666666677666642 1355555554221 111
Q ss_pred HHHHHHHHHHhcCCCEEEeccCC---------CHHHHHHHHHhCCCCCccceeeecCC-CCCCCCHHHHHhcCCCEEecc
Q 010948 241 ESLRRSRAFADAGADVLFIDALA---------SKEEMKAFCEISPLVPKMANMLEGGG-KTPILNPLELEELGFKLVAYP 310 (497)
Q Consensus 241 eaIeRAkAY~eAGAD~IfIeg~~---------s~eei~~i~~~v~~vP~~~N~l~~~g-~tP~lt~~eL~elGv~~Vsyp 310 (497)
.+.+-+++.+++||+++.||+-+ +-+.+.++.+.++.+|+..| |+ +++.--.+-|+.-|+.-|..+
T Consensus 153 ~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~N----GdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 153 LALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIAN----GDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred cHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeC----CCcCCHHHHHHHHHhhCCCEEEEc
Confidence 36778899999999999999864 56788888888876676655 22 222222344555688877765
Q ss_pred chH
Q 010948 311 LSL 313 (497)
Q Consensus 311 ~~l 313 (497)
=..
T Consensus 229 Rga 231 (323)
T COG0042 229 RGA 231 (323)
T ss_pred HHH
Confidence 443
No 98
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=96.64 E-value=0.76 Score=48.73 Aligned_cols=224 Identities=13% Similarity=0.119 Sum_probs=144.2
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-cce
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPV 153 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-iPV 153 (497)
+-|....+.+-.+.+.|||+.-+++. +|+.+.+.|+..+-+.. . .+.++.+...++.++...+ +||
T Consensus 6 ~iL~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~-~--------~~g~~~~~~~~~~~ae~~~~VPV 76 (347)
T TIGR01521 6 QLLDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGAR-S--------YAGAPFLRHLILAAIEEYPHIPV 76 (347)
T ss_pred HHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchh-h--------hCCHHHHHHHHHHHHHhCCCCcE
Confidence 44666666666688999999999865 45678999987754421 1 1335667777888887775 999
Q ss_pred EeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCC-CccccCHHHHHHHHHHHHHHHHhcCCC----eEEE
Q 010948 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTR-GRKVVSREEAVMRIKAAVDARKESGSD----IVIV 228 (497)
Q Consensus 154 IaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~-gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvIi 228 (497)
.+=.|+|. +. +.+++.+++|...|.|... |.. .+.-.|.||-+++-+.+++-++..|.. +=.+
T Consensus 77 alHLDHg~-~~----e~i~~Ai~~GFtSVMiDgS-------~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~i 144 (347)
T TIGR01521 77 VMHQDHGN-SP----ATCQRAIQLGFTSVMMDGS-------LREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCL 144 (347)
T ss_pred EEECCCCC-CH----HHHHHHHHcCCCEEeecCc-------CCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeec
Confidence 99999994 33 3455668899999999443 321 223458899888888888877653321 1111
Q ss_pred Eec--------cchhccc---HHH---HHHHHHHHHh-cCCCEEEe-----ccC-----------CCHHHHHHHHHhCCC
Q 010948 229 ART--------DSRQALS---LEE---SLRRSRAFAD-AGADVLFI-----DAL-----------ASKEEMKAFCEISPL 277 (497)
Q Consensus 229 ART--------DA~~~~~---lde---aIeRAkAY~e-AGAD~IfI-----eg~-----------~s~eei~~i~~~v~~ 277 (497)
+-. |...... .++ --+.|+.|.+ .|+|++-+ +|+ -+.+.+++|.+.++.
T Consensus 145 gg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~ 224 (347)
T TIGR01521 145 GSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPD 224 (347)
T ss_pred ccccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCC
Confidence 211 1100000 000 1255666764 69998753 333 134566777777744
Q ss_pred CCccceeeecCCCCC------------------CCCHHH---HHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 278 VPKMANMLEGGGKTP------------------ILNPLE---LEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 278 vP~~~N~l~~~g~tP------------------~lt~~e---L~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
+|+ +|.++..+| .++.++ .-++|++-|=+..-+..+.+.++++.+.
T Consensus 225 vPL---VLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~ 291 (347)
T TIGR01521 225 THL---VMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAA 291 (347)
T ss_pred CCE---EEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHH
Confidence 665 466544444 133444 4568999999999999999999988764
No 99
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.64 E-value=0.1 Score=54.09 Aligned_cols=176 Identities=17% Similarity=0.132 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHH
Q 010948 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (497)
Q Consensus 134 tldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrA 213 (497)
.++.++...+...+..+.||++-+ +| .++....+.++.++++|+++|.|-=...|..- +..|.. ..+...+-+++
T Consensus 83 g~~~~~~~i~~~~~~~~~pvi~si-~g-~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~-~~~g~~--~~~~~~eiv~~ 157 (325)
T cd04739 83 GPEEYLELIRRAKRAVSIPVIASL-NG-VSAGGWVDYARQIEEAGADALELNIYALPTDP-DISGAE--VEQRYLDILRA 157 (325)
T ss_pred CHHHHHHHHHHHHhccCCeEEEEe-CC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC-Ccccch--HHHHHHHHHHH
Confidence 467777777766555579999998 44 24667888999999999999977543211110 111111 11223344444
Q ss_pred HHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCC-----C---------------------HHH
Q 010948 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA-----S---------------------KEE 267 (497)
Q Consensus 214 Av~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~-----s---------------------~ee 267 (497)
++++. +.-|+.+.-. .+++..+-+++.+++|||+|.+.... + .+.
T Consensus 158 v~~~~-----~iPv~vKl~p----~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~ 228 (325)
T cd04739 158 VKSAV-----TIPVAVKLSP----FFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRW 228 (325)
T ss_pred HHhcc-----CCCEEEEcCC----CccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHH
Confidence 44432 2334444211 23456677888899999999886521 1 122
Q ss_pred HHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHH
Q 010948 268 MKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328 (497)
Q Consensus 268 i~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i 328 (497)
+.++.+.+. +|+. ..||-.-.-+..+.-.+|...|-.+..++......+....++|
T Consensus 229 v~~v~~~~~-ipIi----g~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 229 IAILSGRVK-ASLA----ASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred HHHHHcccC-CCEE----EECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHH
Confidence 334444442 4543 3345333334556666899999999888776555555555555
No 100
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=96.61 E-value=0.023 Score=57.69 Aligned_cols=165 Identities=20% Similarity=0.241 Sum_probs=106.4
Q ss_pred CCCccceeecceeeecccchhhh--hhcccC------CCCcceeeccccCCCccccccCcHHHHHH--HHHhCCCceeec
Q 010948 25 RPSSFLGINNNTISFNKTNTNTL--LLNTAT------NPGTINRTRVYRKNSTGVEACLSPAKSLR--QILELPGVHQGP 94 (497)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~pr~~~~~R~y~rgs~~i~~a~~~a~~Lr--~ll~~~~~iv~p 94 (497)
++...-+.+|-+=-.+-+..... +..... ...|..+.=..-.-.+.++ ..++++ +.|-+.++.++|
T Consensus 67 ~~~~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD----~~etl~Aae~Lv~eGF~VlP 142 (267)
T CHL00162 67 DWNKLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPD----PIGTLKAAEFLVKKGFTVLP 142 (267)
T ss_pred chhccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCC----hHHHHHHHHHHHHCCCEEee
Confidence 44566667776655544443322 223333 4567666433222222222 222222 233355678888
Q ss_pred -ccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHH
Q 010948 95 -ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKG 173 (497)
Q Consensus 95 -~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~ 173 (497)
..-|...|+-++++|+.+|.--|.-+- |-+|+.+ .+..+.|....++|||+| .|-|.+.+++.
T Consensus 143 Y~~~D~v~a~rLed~Gc~aVMPlgsPIG-Sg~Gl~n---------~~~l~~i~e~~~vpVivd--AGIgt~sDa~~---- 206 (267)
T CHL00162 143 YINADPMLAKHLEDIGCATVMPLGSPIG-SGQGLQN---------LLNLQIIIENAKIPVIID--AGIGTPSEASQ---- 206 (267)
T ss_pred cCCCCHHHHHHHHHcCCeEEeeccCccc-CCCCCCC---------HHHHHHHHHcCCCcEEEe--CCcCCHHHHHH----
Confidence 777999999999999999998776664 4566654 235677878788999999 67778777764
Q ss_pred HHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 174 l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
.++.|++||-+--... ++ -++.+|+.-++.|++|.+
T Consensus 207 AmElGaDgVL~nSaIa--kA--------~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 207 AMELGASGVLLNTAVA--QA--------KNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred HHHcCCCEEeecceee--cC--------CCHHHHHHHHHHHHHHHH
Confidence 4578999999876652 11 134789999999998865
No 101
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.60 E-value=0.084 Score=50.79 Aligned_cols=196 Identities=21% Similarity=0.197 Sum_probs=106.3
Q ss_pred ccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHH-hhcCcceEeeCCCCCCCHHHHHHHHHH
Q 010948 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLIT-QAVSIPVIGDGDNGYGNAMNVKRTVKG 173 (497)
Q Consensus 95 ~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~-ra~~iPVIaD~DtGYG~~~~V~rtVk~ 173 (497)
++=|...=+++.+.|.+.+|+= +-.+...+.... .+ ..... ...+.|+++=+=. +++....+.++.
T Consensus 9 ~~~~~~fR~l~~~~~~~~~~t~-~~~~~~~~~~~~------~~----~~~~~~~~~~~p~~~qi~g--~~~~~~~~aa~~ 75 (231)
T cd02801 9 GVTDLPFRLLCRRYGADLVYTE-MISAKALLRGNR------KR----LRLLTRNPEERPLIVQLGG--SDPETLAEAAKI 75 (231)
T ss_pred CCcCHHHHHHHHHHCCCEEEec-CEEEhhhhhcCH------HH----HHhhccCccCCCEEEEEcC--CCHHHHHHHHHH
Confidence 5556666667777887777753 111111111111 00 01111 1235888876431 257888999999
Q ss_pred HHHhCccEEEecCCCCCC--CC-CCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH
Q 010948 174 YIKAGFAGIILEDQVSPK--GC-GHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (497)
Q Consensus 174 l~~AGaAGI~IEDq~~pK--rC-GH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~ 250 (497)
+.++|++||.|--.. |. .. ++.++.-+-..+...+.|++.+++. +.++.+-.|.--. .. +++++.++.+.
T Consensus 76 ~~~aG~d~ieln~g~-p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~---~~~v~vk~r~~~~--~~-~~~~~~~~~l~ 148 (231)
T cd02801 76 VEELGADGIDLNMGC-PSPKVTKGGAGAALLKDPELVAEIVRAVREAV---PIPVTVKIRLGWD--DE-EETLELAKALE 148 (231)
T ss_pred HHhcCCCEEEEeCCC-CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc---CCCEEEEEeeccC--Cc-hHHHHHHHHHH
Confidence 999999999995431 10 00 1112222224454555555555442 2344444442110 11 58899999999
Q ss_pred hcCCCEEEeccC---------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhc-CCCEEeccchHHH
Q 010948 251 DAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL-GFKLVAYPLSLIG 315 (497)
Q Consensus 251 eAGAD~IfIeg~---------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~el-Gv~~Vsyp~~ll~ 315 (497)
++|+|.|-+++. .+.+.++++.+... +|+.+| ++-.-.-+..++.+. |+..|..+-.++.
T Consensus 149 ~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~-ipvi~~----Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 149 DAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS-IPVIAN----GDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC-CeEEEe----CCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 999999976543 24456666666543 565543 332111134555555 7888888765443
No 102
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=96.58 E-value=0.14 Score=53.47 Aligned_cols=211 Identities=19% Similarity=0.169 Sum_probs=115.2
Q ss_pred CCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc---CcceEeeC--------------------CCCCCC--
Q 010948 109 GFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV---SIPVIGDG--------------------DNGYGN-- 163 (497)
Q Consensus 109 GfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~---~iPVIaD~--------------------DtGYG~-- 163 (497)
|+-.|.+++..+.....++|....+.-++.+...+++++++ +..+++=+ +.++..
T Consensus 46 G~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~ 125 (353)
T cd02930 46 GVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPR 125 (353)
T ss_pred CceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCC
Confidence 66666666655543333555544455567777777776532 22222221 111110
Q ss_pred ---H-------HHHHHHHHHHHHhCccEEEecCC-----------CCCCCCCCCCCccccC-HHHHHHHHHHHHHHHHhc
Q 010948 164 ---A-------MNVKRTVKGYIKAGFAGIILEDQ-----------VSPKGCGHTRGRKVVS-REEAVMRIKAAVDARKES 221 (497)
Q Consensus 164 ---~-------~~V~rtVk~l~~AGaAGI~IEDq-----------~~pKrCGH~~gk~lvp-~ee~~~KIrAAv~Ar~~~ 221 (497)
. ....+++++.+++|.+||.|-.. ...||...-+|- +.. .+...+-|++++++ .
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs-lenR~r~~~eiv~aIR~~---v 201 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGS-FENRMRFPVEIVRAVRAA---V 201 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCC-HHHHhHHHHHHHHHHHHH---c
Confidence 1 23456677888899999999442 124555555553 221 23333444444443 4
Q ss_pred CCCeEEEEeccch----hcccHHHHHHHHHHHHhcCCCEEEec-----cC-C----------CHHHHHHHHHhCCCCCcc
Q 010948 222 GSDIVIVARTDSR----QALSLEESLRRSRAFADAGADVLFID-----AL-A----------SKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 222 g~dfvIiARTDA~----~~~~ldeaIeRAkAY~eAGAD~IfIe-----g~-~----------s~eei~~i~~~v~~vP~~ 281 (497)
|++|.|.-|.-.. ...+++|+++-++.++++|+|.|-+- .. + ..+.++++.+.++ +|+.
T Consensus 202 G~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi 280 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD-IPVI 280 (353)
T ss_pred CCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC-CCEE
Confidence 7889888786542 22478999999999999999999772 11 1 1233556666664 5655
Q ss_pred ceeeecCCCCCCCCHHHHHhcC-CCEEeccchHHHHHHHHHHHHHHHHHcCCC
Q 010948 282 ANMLEGGGKTPILNPLELEELG-FKLVAYPLSLIGVSVRAMQDALTAIKGGRI 333 (497)
Q Consensus 282 ~N~l~~~g~tP~lt~~eL~elG-v~~Vsyp~~ll~aa~~Am~~al~~i~~g~~ 333 (497)
.| ++-...-..+++-+-| +..|.++-.++. --+....+++|..
T Consensus 281 ~~----G~i~~~~~a~~~i~~g~~D~V~~gR~~l~-----dP~~~~k~~~g~~ 324 (353)
T cd02930 281 AS----NRINTPEVAERLLADGDADMVSMARPFLA-----DPDFVAKAAAGRA 324 (353)
T ss_pred Ec----CCCCCHHHHHHHHHCCCCChhHhhHHHHH-----CccHHHHHHhCCc
Confidence 33 2211111234444444 777766543332 2344556666654
No 103
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.57 E-value=0.048 Score=55.56 Aligned_cols=140 Identities=22% Similarity=0.259 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhCccEEEecCCC--------C---CCCCCCCCCccccC-HHHHHHHHHHHHHHHHhcCCCeEEEEeccc
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQV--------S---PKGCGHTRGRKVVS-REEAVMRIKAAVDARKESGSDIVIVARTDS 233 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~--------~---pKrCGH~~gk~lvp-~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA 233 (497)
...+.+++.+++|++||.|--.. . .+|...-+|- +.. .+...+.|++++++ .|++|.|..|...
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs-~enr~r~~~eii~avr~~---~g~d~~i~vris~ 217 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGS-LENRARFLLEIVAAVREA---VGPDFPVGVRLSA 217 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCC-HHHHHHHHHHHHHHHHHH---cCCCceEEEEech
Confidence 34456678889999999996531 1 2333332332 221 12234455555544 4678888888654
Q ss_pred h----hcccHHHHHHHHHHHHhcCCCEEEeccC-----------------CCHHHHHHHHHhCCCCCccceeeecCCCCC
Q 010948 234 R----QALSLEESLRRSRAFADAGADVLFIDAL-----------------ASKEEMKAFCEISPLVPKMANMLEGGGKTP 292 (497)
Q Consensus 234 ~----~~~~ldeaIeRAkAY~eAGAD~IfIeg~-----------------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP 292 (497)
. .....+++++-++.++++|+|.|-+... ...+.++++.+.++ +|+..+ ++-.-
T Consensus 218 ~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~----Ggi~t 292 (327)
T cd02803 218 DDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK-IPVIAV----GGIRD 292 (327)
T ss_pred hccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC-CCEEEe----CCCCC
Confidence 3 1235789999999999999999954321 12345666767664 565432 23211
Q ss_pred CCCHHHHHhc-CCCEEeccchHH
Q 010948 293 ILNPLELEEL-GFKLVAYPLSLI 314 (497)
Q Consensus 293 ~lt~~eL~el-Gv~~Vsyp~~ll 314 (497)
.-..+++-+. |+..|.++-.++
T Consensus 293 ~~~a~~~l~~g~aD~V~igR~~l 315 (327)
T cd02803 293 PEVAEEILAEGKADLVALGRALL 315 (327)
T ss_pred HHHHHHHHHCCCCCeeeecHHHH
Confidence 1234555555 688888876554
No 104
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.57 E-value=0.034 Score=57.53 Aligned_cols=228 Identities=17% Similarity=0.174 Sum_probs=124.9
Q ss_pred ecccCChHHHHHHHHhC-CcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCC-CHHHHHHH
Q 010948 93 GPACFDALSAKLVEKSG-FSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRT 170 (497)
Q Consensus 93 ~p~ayDalSAriae~aG-fdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG-~~~~V~rt 170 (497)
|-|.=|..-=+++.+.| ++.+|+- +- ++..+-+++.....+.+++.. ........|+++-+ +| ++....++
T Consensus 8 Mag~td~~fR~l~~~~g~~~~~~te-mv-s~~~~~~~~~~~~~~~~~~~~--~~~~~~e~p~~vQl---~g~~p~~~~~a 80 (312)
T PRK10550 8 MEGVLDSLVRELLTEVNDYDLCITE-FL-RVVDQLLPVKVFHRLCPELHN--ASRTPSGTLVRIQL---LGQYPQWLAEN 80 (312)
T ss_pred CCCCcCHHHHHHHHHhCCCCEEEeC-CE-EechhcccchhHHHHhHHhcc--cCCCCCCCcEEEEe---ccCCHHHHHHH
Confidence 33777877778888888 6766653 11 110111221111111111100 00111247888765 55 57888899
Q ss_pred HHHHHHhCccEEEecCCC-CCCCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHH
Q 010948 171 VKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (497)
Q Consensus 171 Vk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkA 248 (497)
++.+.+.|+++|.|-=+- .||....-+|-.|. .++-..+-+++++++. +.++-|..|+-.. -...++.++-++.
T Consensus 81 A~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~---~~~~pVsvKiR~g-~~~~~~~~~~a~~ 156 (312)
T PRK10550 81 AARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV---PAHLPVTVKVRLG-WDSGERKFEIADA 156 (312)
T ss_pred HHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhc---CCCcceEEEEECC-CCCchHHHHHHHH
Confidence 999999999999997654 23332222333343 3333333344444432 2345566664321 1223568899999
Q ss_pred HHhcCCCEEEeccCC----------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHH----HHhcCCCEEeccchHH
Q 010948 249 FADAGADVLFIDALA----------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE----LEELGFKLVAYPLSLI 314 (497)
Q Consensus 249 Y~eAGAD~IfIeg~~----------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~e----L~elGv~~Vsyp~~ll 314 (497)
++++|+|+|-|++-. +.+.++++.+.+. +|+..| |+ ..+.++ |+.-|+..|.+|-.++
T Consensus 157 l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~-iPVi~n----Gd---I~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 157 VQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLT-IPVIAN----GE---IWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcC-CcEEEe----CC---cCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 999999999998631 3456788888765 676655 23 224433 3345788888876554
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhc
Q 010948 315 GVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETL 349 (497)
Q Consensus 315 ~aa~~Am~~al~~i~~g~~~~~~~~~~~~ei~~lv 349 (497)
.-- ...++++.|. + .++++|+.+++
T Consensus 229 ~nP-----~lf~~~~~g~-~----~~~~~e~~~~~ 253 (312)
T PRK10550 229 NIP-----NLSRVVKYNE-P----RMPWPEVVALL 253 (312)
T ss_pred hCc-----HHHHHhhcCC-C----CCCHHHHHHHH
Confidence 432 2223344443 1 24677775544
No 105
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.53 E-value=0.27 Score=50.23 Aligned_cols=170 Identities=14% Similarity=0.100 Sum_probs=97.6
Q ss_pred hHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhC
Q 010948 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (497)
Q Consensus 99 alSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG 178 (497)
..-|+.++++|...++.+ .. ..+++++... ..-|+.+-. .+..++....+.+++..+.|
T Consensus 84 ~~la~aa~~~g~~~~~~~-~~------------~~~~~~i~~~-------~~~~~~~ql-~~~~~~~~~~~~i~~~~~~g 142 (299)
T cd02809 84 LATARAAAAAGIPFTLST-VS------------TTSLEEVAAA-------APGPRWFQL-YVPRDREITEDLLRRAEAAG 142 (299)
T ss_pred HHHHHHHHHcCCCEEecC-CC------------cCCHHHHHHh-------cCCCeEEEE-eecCCHHHHHHHHHHHHHcC
Confidence 466788888887544432 11 1245554422 224655544 11125667778888888999
Q ss_pred ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEE
Q 010948 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (497)
Q Consensus 179 aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~If 258 (497)
+.+|.|--. |.+.+.. ...+ .|+.++++. +.++++-.. .. .+.|+..+++|||+|.
T Consensus 143 ~~~i~l~~~-----~p~~~~~---~~~~---~i~~l~~~~---~~pvivK~v------~s----~~~a~~a~~~G~d~I~ 198 (299)
T cd02809 143 YKALVLTVD-----TPVLGRR---LTWD---DLAWLRSQW---KGPLILKGI------LT----PEDALRAVDAGADGIV 198 (299)
T ss_pred CCEEEEecC-----CCCCCCC---CCHH---HHHHHHHhc---CCCEEEeec------CC----HHHHHHHHHCCCCEEE
Confidence 999887543 3322211 1123 344444332 223333221 11 3557888899999999
Q ss_pred ecc---------CCCHHHHHHHHHhCC-CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 010948 259 IDA---------LASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (497)
Q Consensus 259 Ieg---------~~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa 317 (497)
+.+ +++.+.+.++.+.++ .+|++ ..||-.-..+..+.-.+|..-|..+...+.+.
T Consensus 199 v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvi----a~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~ 263 (299)
T cd02809 199 VSNHGGRQLDGAPATIDALPEIVAAVGGRIEVL----LDGGIRRGTDVLKALALGADAVLIGRPFLYGL 263 (299)
T ss_pred EcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEE----EeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 843 456677778877764 35543 33453323445555569999999998777654
No 106
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.49 E-value=0.57 Score=49.33 Aligned_cols=216 Identities=16% Similarity=0.157 Sum_probs=113.6
Q ss_pred hHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-CcceEeeCCC----CCCCHHHHHHHHHH
Q 010948 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDN----GYGNAMNVKRTVKG 173 (497)
Q Consensus 99 alSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPVIaD~Dt----GYG~~~~V~rtVk~ 173 (497)
.--|++++++|.. +.++|...+ +=.| ++.+..+.+.+.+ +.|+++-.=. |+ ++..+.+.+++
T Consensus 80 ~~La~~a~~~G~~-~~~Gs~~~~---~~~~--------~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~-~~~~~~~~~~~ 146 (352)
T PRK05437 80 RKLAEAAEELGIA-MGVGSQRAA---LKDP--------ELADSFSVVRKVAPDGLLFANLGAVQLYGY-GVEEAQRAVEM 146 (352)
T ss_pred HHHHHHHHHcCCC-eEecccHhh---ccCh--------hhHHHHHHHHHHCCCceEEeecCccccCCC-CHHHHHHHHHh
Confidence 3446788888884 444544432 1112 2334444555555 6888875422 33 34556665544
Q ss_pred HHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcC
Q 010948 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (497)
Q Consensus 174 l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAG 253 (497)
+ ++.+--||+.- +..+....+.. +.+..++.|+++++.. +.++++-..- . ++ ..+-|+...++|
T Consensus 147 ~-~adal~l~l~~---~qe~~~p~g~~--~f~~~le~i~~i~~~~---~vPVivK~~g--~---g~--s~~~a~~l~~~G 210 (352)
T PRK05437 147 I-EADALQIHLNP---LQELVQPEGDR--DFRGWLDNIAEIVSAL---PVPVIVKEVG--F---GI--SKETAKRLADAG 210 (352)
T ss_pred c-CCCcEEEeCcc---chhhcCCCCcc--cHHHHHHHHHHHHHhh---CCCEEEEeCC--C---CC--cHHHHHHHHHcC
Confidence 4 45555555521 11111112211 2344567777777653 2344433221 1 11 146788888999
Q ss_pred CCEEEeccC---------------------------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCE
Q 010948 254 ADVLFIDAL---------------------------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKL 306 (497)
Q Consensus 254 AD~IfIeg~---------------------------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~ 306 (497)
+|+|.+.+. ++.+.+.++.+....+|+ +..||-.-..+..+.-.+|.+.
T Consensus 211 vd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipv----ia~GGI~~~~dv~k~l~~GAd~ 286 (352)
T PRK05437 211 VKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPI----IASGGIRNGLDIAKALALGADA 286 (352)
T ss_pred CCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeE----EEECCCCCHHHHHHHHHcCCCE
Confidence 999998552 122234444444322343 3444533335667778889999
Q ss_pred EeccchHHHHHH----HHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHH
Q 010948 307 VAYPLSLIGVSV----RAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEE 357 (497)
Q Consensus 307 Vsyp~~ll~aa~----~Am~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~ 357 (497)
|..+..++.++. .++.+.++.+.+. ++.+..+.|.....++
T Consensus 287 v~ig~~~l~~~~~~g~~~v~~~i~~~~~e----------L~~~m~~~G~~~i~eL 331 (352)
T PRK05437 287 VGMAGPFLKAALEGGEEAVIELIEQWIEE----------LKIAMFLTGAKNIAEL 331 (352)
T ss_pred EEEhHHHHHHHHhccHHHHHHHHHHHHHH----------HHHHHHHhCCCCHHHh
Confidence 999999888753 3334444444432 3444455555555544
No 107
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=96.47 E-value=0.37 Score=49.10 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=64.6
Q ss_pred HHHHHHhCCCcee--ecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC
Q 010948 80 SLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (497)
Q Consensus 80 ~Lr~ll~~~~~iv--~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~ 157 (497)
.|+++++++++.+ .....++..+.++..+|||.+++=- -| +.++++++.+.++.+. ..+++.+|=.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~------EH-----g~~~~~~l~~~i~a~~-~~g~~~lVRv 75 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDG------EH-----APNTIQDLYHQLQAIA-PYASQPVIRP 75 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEcc------cc-----CCCCHHHHHHHHHHHH-hcCCCeEEEC
Confidence 5889998888754 3466688889999999999999751 12 3578888888887774 4566666666
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEec
Q 010948 158 DNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (497)
Q Consensus 158 DtGYG~~~~V~rtVk~l~~AGaAGI~IE 185 (497)
+.+ ++ ..+++..++||.||.+=
T Consensus 76 p~~--~~----~~i~r~LD~GA~GIivP 97 (267)
T PRK10128 76 VEG--SK----PLIKQVLDIGAQTLLIP 97 (267)
T ss_pred CCC--CH----HHHHHHhCCCCCeeEec
Confidence 644 33 55677889999999873
No 108
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.45 E-value=0.13 Score=53.11 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=103.6
Q ss_pred eeecccc-CCCccccccCcHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhh-------hhcccC--
Q 010948 59 NRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLALP-- 128 (497)
Q Consensus 59 ~~~R~y~-rgs~~i~~a~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSa-------s~lG~P-- 128 (497)
++++||+ ||. +++ ..-+-|++..+.=+.-++-.++|.-.+..+.+. .|.+.++.+-+=. ...|.|
T Consensus 60 pRTSp~sFrG~-G~e---eGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~-~DilQIgAr~~rqtdLL~a~~~tgkpV~ 134 (290)
T PLN03033 60 NRTSSKSFRGP-GMA---EGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIIN 134 (290)
T ss_pred CCCCCCCCCCC-CHH---HHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh-CcEEeeCcHHHHHHHHHHHHHccCCeEE
Confidence 4557887 552 222 344566666666667777799999999888887 6999999654322 122433
Q ss_pred --CCCCCCHHHHHHHHHHHHh-------------------------------hcCcceEeeCCCC---------------
Q 010948 129 --DTGFISYGEMVDQGQLITQ-------------------------------AVSIPVIGDGDNG--------------- 160 (497)
Q Consensus 129 --D~g~ltldEml~~~r~I~r-------------------------------a~~iPVIaD~DtG--------------- 160 (497)
-+..++.+||+..++.|.. .+++|||+|.=++
T Consensus 135 lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~mk~~~lPVI~DpSHsvQ~pg~~~~~~~g~~ 214 (290)
T PLN03033 135 IKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGKKLDGGGVA 214 (290)
T ss_pred eCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCcccccccCCC
Confidence 2346889999998888753 2468999999884
Q ss_pred -CCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHH
Q 010948 161 -YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (497)
Q Consensus 161 -YG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv 215 (497)
-|..+-|.-.++.-+.+|++|+.||=...|.+ .-.+|...++.+++..-++.++
T Consensus 215 s~G~Re~V~~larAAvA~GaDGlfiEvHpdP~~-AlsDg~q~l~~~~l~~ll~~l~ 269 (290)
T PLN03033 215 SGGLRELIPCIARTAVAVGVDGIFMEVHDDPLS-APVDGPTQWPLRHLEELLEELI 269 (290)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEEecCCccc-cCCCcccCcCHHHHHHHHHHHH
Confidence 24456788888888999999999997655542 3446777777766544444443
No 109
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.41 E-value=0.98 Score=45.48 Aligned_cols=166 Identities=19% Similarity=0.198 Sum_probs=97.8
Q ss_pred CcceEeeCC--CCCC---CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC
Q 010948 150 SIPVIGDGD--NGYG---NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD 224 (497)
Q Consensus 150 ~iPVIaD~D--tGYG---~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d 224 (497)
++|+++-.+ ++|+ ........+++..+.||++|.+=-... . ...++..+.++++++..++.|..
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~~g-----~------~~~~~~~~~~~~v~~~~~~~g~p 141 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVNVG-----S------ETEAEMLEDLGEVAEECEEWGMP 141 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEecC-----C------hhHHHHHHHHHHHHHHHHHcCCc
Confidence 355555444 4554 113344557888999999998865421 0 01345677777777777766778
Q ss_pred eEEEEeccchh---cccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCC-CC-----C
Q 010948 225 IVIVARTDSRQ---ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-IL-----N 295 (497)
Q Consensus 225 fvIiARTDA~~---~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP-~l-----t 295 (497)
++++...|... ....++...-++...++|||.|-..-..+.+.++++++..+ +|. +..+ |... .+ .
T Consensus 142 l~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~~~~~l~~~~~~~~-ipV---~a~G-Gi~~~~~~~~l~~ 216 (267)
T PRK07226 142 LLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTGDPESFREVVEGCP-VPV---VIAG-GPKTDTDREFLEM 216 (267)
T ss_pred EEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCCCHHHHHHHHHhCC-CCE---EEEe-CCCCCCHHHHHHH
Confidence 88876443311 11223444446788899999998764455678888887544 453 2333 4221 11 1
Q ss_pred HHHHHhcCCCEEeccchHHHH-HHHHHHHHHHHHHcC
Q 010948 296 PLELEELGFKLVAYPLSLIGV-SVRAMQDALTAIKGG 331 (497)
Q Consensus 296 ~~eL~elGv~~Vsyp~~ll~a-a~~Am~~al~~i~~g 331 (497)
..++.+.|..-++.+..++.. -..++..++.++..+
T Consensus 217 v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~ 253 (267)
T PRK07226 217 VRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHE 253 (267)
T ss_pred HHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhC
Confidence 556678999988887776654 123334444444433
No 110
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.41 E-value=0.023 Score=57.06 Aligned_cols=171 Identities=16% Similarity=0.188 Sum_probs=100.0
Q ss_pred eccccCCCCCccceeecceeeecccchh--hhhhcccCCCCcceeeccccCCCccccccCcHHHHH---HHHHhCCCcee
Q 010948 18 CLFHSNSRPSSFLGINNNTISFNKTNTN--TLLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSL---RQILELPGVHQ 92 (497)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~pr~~~~~R~y~rgs~~i~~a~~~a~~L---r~ll~~~~~iv 92 (497)
.+|-..-+++.+-+++|-+=-.+-+... ..+...+..-.|..+.=.--.-.+.++ ..+++ +.|. +.+..+
T Consensus 52 ~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD----~~etl~Aae~Lv-~eGF~V 126 (247)
T PF05690_consen 52 DNILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPD----PIETLKAAEILV-KEGFVV 126 (247)
T ss_dssp HHCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-----HHHHHHHHHHHH-HTT-EE
T ss_pred ccHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCC----hhHHHHHHHHHH-HCCCEE
Confidence 3455556677888899977655544433 345667778888776332222222222 23333 3344 456778
Q ss_pred ec-ccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHH
Q 010948 93 GP-ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTV 171 (497)
Q Consensus 93 ~p-~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtV 171 (497)
+| ..-|...|+-++++|+.++.--|.-+. |-+|+-+ .+..+.|....++|||+|+ |-|.+.++..
T Consensus 127 lPY~~~D~v~akrL~d~GcaavMPlgsPIG-Sg~Gi~n---------~~~l~~i~~~~~vPvIvDA--GiG~pSdaa~-- 192 (247)
T PF05690_consen 127 LPYCTDDPVLAKRLEDAGCAAVMPLGSPIG-SGRGIQN---------PYNLRIIIERADVPVIVDA--GIGTPSDAAQ-- 192 (247)
T ss_dssp EEEE-S-HHHHHHHHHTT-SEBEEBSSSTT-T---SST---------HHHHHHHHHHGSSSBEEES-----SHHHHHH--
T ss_pred eecCCCCHHHHHHHHHCCCCEEEecccccc-cCcCCCC---------HHHHHHHHHhcCCcEEEeC--CCCCHHHHHH--
Confidence 88 777999999999999999998776664 4456544 2456677777799999997 7888866663
Q ss_pred HHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 172 k~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
..|.|++||-+.--+. +. + ++-.|+.-.+.|++|.+
T Consensus 193 --AMElG~daVLvNTAiA--~A----~----dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 193 --AMELGADAVLVNTAIA--KA----K----DPVAMARAFKLAVEAGR 228 (247)
T ss_dssp --HHHTT-SEEEESHHHH--TS----S----SHHHHHHHHHHHHHHHH
T ss_pred --HHHcCCceeehhhHHh--cc----C----CHHHHHHHHHHHHHHHH
Confidence 4578999999965431 11 1 23467777777777754
No 111
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=96.40 E-value=0.18 Score=53.45 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=97.2
Q ss_pred HHHHHhhcCcceEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH-
Q 010948 142 GQLITQAVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK- 219 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~- 219 (497)
+|++....+-||+.=+=---| ++.+..+.+.++...|++.|+. |. +++..+..|.+|=+..+..+++...
T Consensus 117 ~R~~lgv~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKd-De-------~l~~~~~~p~~eRv~~v~~av~~a~~ 188 (364)
T cd08210 117 LRALLGIPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKD-DH-------GLADQPFAPFEERVKACQEAVAEANA 188 (364)
T ss_pred HHHHhCCCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeec-Cc-------cccCccCCCHHHHHHHHHHHHHHHHh
Confidence 566666667888765533335 6788999999999999999976 32 2445667777776666666654443
Q ss_pred hcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCC-HHHHHHHHHhCCCCCccce--eeecCCCCCC-CC
Q 010948 220 ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEISPLVPKMAN--MLEGGGKTPI-LN 295 (497)
Q Consensus 220 ~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s-~eei~~i~~~v~~vP~~~N--~l~~~g~tP~-lt 295 (497)
+.|......+-.-+ ..+|+++|++..+++||+++++.-+.. -..++.+++....+|+..- +...-...|. ++
T Consensus 189 eTG~~~~y~~Nita----~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is 264 (364)
T cd08210 189 ETGGRTLYAPNVTG----PPTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGIS 264 (364)
T ss_pred hcCCcceEEEecCC----CHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEccccccccccCCCccc
Confidence 34443333333222 357999999999999999999865543 3456666665331333211 0000001111 22
Q ss_pred ----HHHHHh-cCCCEEeccch
Q 010948 296 ----PLELEE-LGFKLVAYPLS 312 (497)
Q Consensus 296 ----~~eL~e-lGv~~Vsyp~~ 312 (497)
...|.+ .|+..++|++.
T Consensus 265 ~~~~~~kl~RlaGad~~~~~~~ 286 (364)
T cd08210 265 HALLFGTLFRLAGADAVIFPNY 286 (364)
T ss_pred HHHHHHHHHHHhCCCEEEeCCC
Confidence 445444 68888888765
No 112
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.37 E-value=0.0075 Score=61.99 Aligned_cols=146 Identities=24% Similarity=0.306 Sum_probs=86.6
Q ss_pred cceEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCC-CCCCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEE
Q 010948 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVI 227 (497)
Q Consensus 151 iPVIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvI 227 (497)
.|+++=+ +| +++...++++.+.+.|+++|.|-=+- .||.+.+..|-.|+ .++.+.+-|++++++. +.++-+
T Consensus 54 ~p~~~Ql---~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~---~~pvsv 127 (309)
T PF01207_consen 54 RPLIVQL---FGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV---PIPVSV 127 (309)
T ss_dssp -TEEEEE---E-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH----SSEEEE
T ss_pred cceeEEE---eeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc---ccceEE
Confidence 5676643 35 57889999998888899999997764 23333333455555 5555555566666553 234444
Q ss_pred EEeccchhcccHHHHHHHHHHHHhcCCCEEEecc---------CCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHH
Q 010948 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDA---------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE 298 (497)
Q Consensus 228 iARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg---------~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~e 298 (497)
--|+-- ....++.++-++.+.++|+++|.||+ ..+-+.++++.+.++ +|+.+| |+ ..+.++
T Consensus 128 KiR~g~--~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~-ipvi~N----Gd---I~s~~d 197 (309)
T PF01207_consen 128 KIRLGW--DDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP-IPVIAN----GD---IFSPED 197 (309)
T ss_dssp EEESEC--T--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T-SEEEEE----SS-----SHHH
T ss_pred eccccc--ccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc-ceeEEc----Cc---cCCHHH
Confidence 444422 23457899999999999999999998 346678888888887 787766 33 236655
Q ss_pred HHhc----CCCEEeccch
Q 010948 299 LEEL----GFKLVAYPLS 312 (497)
Q Consensus 299 L~el----Gv~~Vsyp~~ 312 (497)
..++ |+.-|..+-.
T Consensus 198 ~~~~~~~tg~dgvMigRg 215 (309)
T PF01207_consen 198 AERMLEQTGADGVMIGRG 215 (309)
T ss_dssp HHHHCCCH-SSEEEESHH
T ss_pred HHHHHHhcCCcEEEEchh
Confidence 5543 7887777654
No 113
>PLN02591 tryptophan synthase
Probab=96.31 E-value=0.25 Score=49.95 Aligned_cols=173 Identities=17% Similarity=0.239 Sum_probs=108.3
Q ss_pred HHHHHhCCcEEEec-chhhhhhhcccCCC------------CCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHH---H
Q 010948 103 KLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM---N 166 (497)
Q Consensus 103 riae~aGfdAI~vS-G~avSas~lG~PD~------------g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~---~ 166 (497)
+.+.++|+|.|=++ -++ -.+.|+ ..+++++.++.++.+++..++|++. .+|-|+. .
T Consensus 23 ~~l~~~Gad~iElGiPfS-----DP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~il---m~Y~N~i~~~G 94 (250)
T PLN02591 23 RLLDACGADVIELGVPYS-----DPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVL---FTYYNPILKRG 94 (250)
T ss_pred HHHHHCCCCEEEECCCCC-----CCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE---EecccHHHHhH
Confidence 44566788888776 221 122232 2468889999999998777899873 6788862 5
Q ss_pred HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE-eccchhcccHHHHHHH
Q 010948 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA-RTDSRQALSLEESLRR 245 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA-RTDA~~~~~ldeaIeR 245 (497)
+.+-++++.++|++|+.|=|= |.||..+-+.++.+. |.+++... =|-. -+|
T Consensus 95 ~~~F~~~~~~aGv~GviipDL---------------P~ee~~~~~~~~~~~----gl~~I~lv~Ptt~---------~~r 146 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDL---------------PLEETEALRAEAAKN----GIELVLLTTPTTP---------TER 146 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCC---------------CHHHHHHHHHHHHHc----CCeEEEEeCCCCC---------HHH
Confidence 667788999999999999872 456655444444332 55555444 3321 267
Q ss_pred HHHHHhcCCCEEEecc---CC----C-HHHHHHHH---HhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 010948 246 SRAFADAGADVLFIDA---LA----S-KEEMKAFC---EISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (497)
Q Consensus 246 AkAY~eAGAD~IfIeg---~~----s-~eei~~i~---~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll 314 (497)
.+++.+..-..|++-+ ++ . .+++..+. ++...+|+++ .+|-++| -+.+++.++|..-|+.|+.+.
T Consensus 147 i~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v---GFGI~~~-e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 147 MKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAV---GFGISKP-EHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEE---eCCCCCH-HHHHHHHhcCCCEEEECHHHH
Confidence 8888888778887633 21 1 23333322 2233456543 3322222 346778889999999999875
Q ss_pred H
Q 010948 315 G 315 (497)
Q Consensus 315 ~ 315 (497)
.
T Consensus 223 k 223 (250)
T PLN02591 223 K 223 (250)
T ss_pred H
Confidence 4
No 114
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.29 E-value=0.11 Score=49.85 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=62.8
Q ss_pred ecccCChH----HHHHHHHhCCcEEEec-chhhhhhhc-ccCCCCC-CCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHH
Q 010948 93 GPACFDAL----SAKLVEKSGFSFCFTS-GFSISAARL-ALPDTGF-ISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM 165 (497)
Q Consensus 93 ~p~ayDal----SAriae~aGfdAI~vS-G~avSas~l-G~PD~g~-ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~ 165 (497)
-.+..|+- .|+.++++|||+|-+- |........ ++= ..+ -..+.+.+.++.|.+.+++||.+++-.|+....
T Consensus 60 qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G-~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~ 138 (231)
T cd02801 60 QLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAG-AALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEE 138 (231)
T ss_pred EEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCee-ehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCch
Confidence 34555554 6778888999999775 322111110 110 111 144556777788877778999999988875444
Q ss_pred HHHHHHHHHHHhCccEEEecCC
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQ 187 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq 187 (497)
...+.++.+.++|++.|++-+.
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCC
Confidence 6788889999999999999664
No 115
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.23 E-value=0.37 Score=50.25 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=99.3
Q ss_pred ChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHh-hcCcceEeeCCC---CCCCHHHHHHHHHH
Q 010948 98 DALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ-AVSIPVIGDGDN---GYGNAMNVKRTVKG 173 (497)
Q Consensus 98 DalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~r-a~~iPVIaD~Dt---GYG~~~~V~rtVk~ 173 (497)
..-=|+.++++|.... ++|... ++-|.. .....+.+.+ ..++|+++-.-. ..++...+.+.+++
T Consensus 72 n~~La~~a~~~g~~~~-~Gs~~~-----~~~~~~------~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~ 139 (333)
T TIGR02151 72 NRNLARAARELGIPMG-VGSQRA-----ALKDPE------TADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDM 139 (333)
T ss_pred HHHHHHHHHHcCCCeE-EcCchh-----hccChh------hHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHH
Confidence 4445667788887544 444332 222211 2222233444 467999985422 11224456666655
Q ss_pred HHHhCccEEEecC-CCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhc
Q 010948 174 YIKAGFAGIILED-QVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA 252 (497)
Q Consensus 174 l~~AGaAGI~IED-q~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eA 252 (497)
+ ++.+-.+|+.- |......|+ . +.+..++.|+++++.. +.++++-- +. . + ...+.|+.++++
T Consensus 140 i-~adal~i~ln~~q~~~~p~g~----~--~f~~~le~i~~i~~~~---~vPVivK~-~g-~---g--~~~~~a~~L~~a 202 (333)
T TIGR02151 140 I-EADALAIHLNVLQELVQPEGD----R--NFKGWLEKIAEICSQL---SVPVIVKE-VG-F---G--ISKEVAKLLADA 202 (333)
T ss_pred h-cCCCEEEcCcccccccCCCCC----c--CHHHHHHHHHHHHHhc---CCCEEEEe-cC-C---C--CCHHHHHHHHHc
Confidence 5 67777777721 211111122 1 2344567777777653 23443321 11 1 1 135778899999
Q ss_pred CCCEEEeccCC---------------------------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCC
Q 010948 253 GADVLFIDALA---------------------------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFK 305 (497)
Q Consensus 253 GAD~IfIeg~~---------------------------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~ 305 (497)
|+|+|.+.+-. +.+.+.++.+....+| ++..||-.-..+....-.+|..
T Consensus 203 Gvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ip----VIasGGI~~~~di~kaLalGAd 278 (333)
T TIGR02151 203 GVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAP----IIASGGLRTGLDVAKAIALGAD 278 (333)
T ss_pred CCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCe----EEEECCCCCHHHHHHHHHhCCC
Confidence 99999997631 1122223322011133 3444453323456666778999
Q ss_pred EEeccchHHHHHH
Q 010948 306 LVAYPLSLIGVSV 318 (497)
Q Consensus 306 ~Vsyp~~ll~aa~ 318 (497)
.|.++..++.+++
T Consensus 279 ~V~igr~~L~~~~ 291 (333)
T TIGR02151 279 AVGMARPFLKAAL 291 (333)
T ss_pred eehhhHHHHHHHH
Confidence 9999999888776
No 116
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.22 E-value=0.045 Score=57.39 Aligned_cols=140 Identities=17% Similarity=0.185 Sum_probs=94.2
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch-hcccHHHHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRRSR 247 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~-~~~~ldeaIeRAk 247 (497)
-+++.+.++|++.|-+-|...--.-||.++. -++.++|+...++++++.. .-++++=-.-. -..+.+++++-|.
T Consensus 46 ~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~-~Vtld~mi~H~~aV~Rga~----~a~vVaDmPfgSY~~s~e~av~nA~ 120 (332)
T PLN02424 46 PSAVHVDSAGIDVCLVGDSAAMVVHGHDTTL-PITLDEMLVHCRAVARGAN----RPLLVGDLPFGSYESSTDQAVESAV 120 (332)
T ss_pred HHHHHHHHcCCCEEEECCcHHHHhcCCCCCC-CcCHHHHHHHHHHHhccCC----CCEEEeCCCCCCCCCCHHHHHHHHH
Confidence 3456778899999999998744445776644 4799999999999887753 33555432221 1236799999999
Q ss_pred HH-HhcCCCEEEeccC-C-CHHHHHHHHHhCCCCCcc---------ceeeec---CCCCCC------CCHHHHHhcCCCE
Q 010948 248 AF-ADAGADVLFIDAL-A-SKEEMKAFCEISPLVPKM---------ANMLEG---GGKTPI------LNPLELEELGFKL 306 (497)
Q Consensus 248 AY-~eAGAD~IfIeg~-~-s~eei~~i~~~v~~vP~~---------~N~l~~---~g~tP~------lt~~eL~elGv~~ 306 (497)
.+ .++||++|-+|+- . ..+.++++++. ++|++ +|.+.+ .|++.. -....|+++|.-.
T Consensus 121 rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~--GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ 198 (332)
T PLN02424 121 RMLKEGGMDAVKLEGGSPSRVTAAKAIVEA--GIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFA 198 (332)
T ss_pred HHHHHhCCcEEEECCCcHHHHHHHHHHHHc--CCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcE
Confidence 88 5799999999986 2 23567777743 35554 344432 233221 1346788999888
Q ss_pred EeccchHHH
Q 010948 307 VAYPLSLIG 315 (497)
Q Consensus 307 Vsyp~~ll~ 315 (497)
+.+....-.
T Consensus 199 ivLE~Vp~~ 207 (332)
T PLN02424 199 VVLECVPAP 207 (332)
T ss_pred EEEcCCcHH
Confidence 888765544
No 117
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=96.22 E-value=0.32 Score=53.01 Aligned_cols=310 Identities=17% Similarity=0.153 Sum_probs=159.6
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchh-hhhh-hcccCCCCCCCHHHHHHHHHHHHhhcCcceE--ee
Q 010948 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFS-ISAA-RLALPDTGFISYGEMVDQGQLITQAVSIPVI--GD 156 (497)
Q Consensus 81 Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~a-vSas-~lG~PD~g~ltldEml~~~r~I~ra~~iPVI--aD 156 (497)
||+-+|+.....++..--..-|..+.++||+.|=++|.+ +-++ +.-.|| -.|.+..++... .+.++. +=
T Consensus 11 lRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~-----p~e~l~~l~~~~--~~~~l~~l~r 83 (448)
T PRK12331 11 LRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNED-----PWERLRKIRKAV--KKTKLQMLLR 83 (448)
T ss_pred CCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCC-----HHHHHHHHHHhC--CCCEEEEEec
Confidence 444444432233333333445677888999999886322 2110 112233 234444433322 235543 55
Q ss_pred CCC--CCCC-HHH-HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCe-EEEEec
Q 010948 157 GDN--GYGN-AMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVART 231 (497)
Q Consensus 157 ~Dt--GYG~-~~~-V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~df-vIiART 231 (497)
..+ ||.. +.+ +..-+++..++|++-|+|-|..+ + .+ .++.+++..++.|... +-+.=|
T Consensus 84 ~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~ln-----d--------~~----n~~~~v~~ak~~G~~v~~~i~~t 146 (448)
T PRK12331 84 GQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALN-----D--------VR----NLETAVKATKKAGGHAQVAISYT 146 (448)
T ss_pred cccccccccCchhhHHHHHHHHHHCCCCEEEEEEecC-----c--------HH----HHHHHHHHHHHcCCeEEEEEEee
Confidence 655 6765 444 55678899999999999998642 1 11 2333344444334222 112334
Q ss_pred cchhcccHHHHHHHHHHHHhcCCCEEEec---cCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCC---CHHHHHhcCC
Q 010948 232 DSRQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPIL---NPLELEELGF 304 (497)
Q Consensus 232 DA~~~~~ldeaIeRAkAY~eAGAD~IfIe---g~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~l---t~~eL~elGv 304 (497)
++ .....+-.++.++.+.++|||.|.+- |+-+++++.++++.+.. +++++.+=.. -+..+ +.-.--++|+
T Consensus 147 ~~-p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~H--nt~GlA~AN~laAieaGa 223 (448)
T PRK12331 147 TS-PVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTH--ATSGIAEMTYLKAIEAGA 223 (448)
T ss_pred cC-CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEec--CCCCcHHHHHHHHHHcCC
Confidence 43 23567788899999999999999985 45567777776654321 2333433111 12233 2344457899
Q ss_pred CEEeccchHH--HHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhccccccc-ccccccCCCCCCC
Q 010948 305 KLVAYPLSLI--GVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRL-SSENVTSNSYDTQ 381 (497)
Q Consensus 305 ~~Vsyp~~ll--~aa~~Am~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~~~~~~-~~~~~~~~~~~~~ 381 (497)
.+|-.....+ ++..-++++.+..|+..+.. ....++.+.++..+ +.+..++|....... ........+|..|
T Consensus 224 d~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~---tgidl~~L~~~~~~--~~~~r~~y~~~~~~~~~~~~~~~~v~~~~ 298 (448)
T PRK12331 224 DIIDTAISPFAGGTSQPATESMVAALQDLGYD---TGLDLEELSEIAEY--FNPIRDHYREEGILNPKVKDVEPKTLIYQ 298 (448)
T ss_pred CEEEeeccccCCCcCCHhHHHHHHHHHhcCCC---CCCCHHHHHHHHHH--HHHHHHHHHhhccCCcccccCCcCeeecC
Confidence 9886655433 55666677777767643222 12344555444332 555666776321100 1123344555554
Q ss_pred CCCc----cchhhhcCCCCCCeeEee--CccccccCCCCCCCCCCCc
Q 010948 382 PMAQ----DDTARRGQSSQDPIVEVI--TPEVYTNSGAGGSRDAFSG 422 (497)
Q Consensus 382 ~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 422 (497)
--.- --.+-+.+...|..-||+ .|.|-...|---.=-|+|-
T Consensus 299 ~PGG~~snl~~ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~Sq 345 (448)
T PRK12331 299 VPGGMLSNLLSQLKEQGAEDKYEEVLKEVPKVRADLGYPPLVTPLSQ 345 (448)
T ss_pred CCcchHhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeeCChhH
Confidence 2211 112223344455555554 1455554554444455554
No 118
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.22 E-value=0.46 Score=47.89 Aligned_cols=174 Identities=19% Similarity=0.190 Sum_probs=104.9
Q ss_pred HHHHHHhCCcEEEec-chhhhhhhcccCC------------CCCCCHHHHHHHHHHHHhh-cCcceEeeCCCCCCCHH--
Q 010948 102 AKLVEKSGFSFCFTS-GFSISAARLALPD------------TGFISYGEMVDQGQLITQA-VSIPVIGDGDNGYGNAM-- 165 (497)
Q Consensus 102 Ariae~aGfdAI~vS-G~avSas~lG~PD------------~g~ltldEml~~~r~I~ra-~~iPVIaD~DtGYG~~~-- 165 (497)
++.++++|+|.|=++ -++ -.+.| ...++++..++.++.|++. .++|++ =.+|-|+.
T Consensus 30 ~~~l~~~Gad~iElGiPfs-----DP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv---~m~Y~Npi~~ 101 (256)
T TIGR00262 30 IKTLIEAGADALELGVPFS-----DPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG---LLTYYNLIFR 101 (256)
T ss_pred HHHHHHcCCCEEEECCCCC-----CCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE---EEEeccHHhh
Confidence 345567899998877 221 12222 2357889999999999876 689986 34677762
Q ss_pred -HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeE-EEEeccchhcccHHHHH
Q 010948 166 -NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV-IVARTDSRQALSLEESL 243 (497)
Q Consensus 166 -~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfv-IiARTDA~~~~~ldeaI 243 (497)
.+.+-++.+.++|++||.|=|- |.+|..+-+.++++ .|.+.+ +++=+-. .
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDl---------------p~ee~~~~~~~~~~----~gl~~i~lv~P~T~---------~ 153 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADL---------------PLEESGDLVEAAKK----HGVKPIFLVAPNAD---------D 153 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC---------------ChHHHHHHHHHHHH----CCCcEEEEECCCCC---------H
Confidence 4567789999999999999774 33444433333332 244543 3333221 3
Q ss_pred HHHHHHHhcCCCEEEe---ccCC---------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 010948 244 RRSRAFADAGADVLFI---DALA---------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (497)
Q Consensus 244 eRAkAY~eAGAD~IfI---eg~~---------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~ 311 (497)
+|.+.+.+..-..|++ .|.+ ..+.++++.+..+ .|. ..++|-...-+..++.++|..-|+.|+
T Consensus 154 eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~-~pi----~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 154 ERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSA-KPV----LVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcC-CCE----EEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 6777777775546665 2221 1233444444332 342 223343211356788889999999999
Q ss_pred hHHHH
Q 010948 312 SLIGV 316 (497)
Q Consensus 312 ~ll~a 316 (497)
.+++.
T Consensus 229 aiv~~ 233 (256)
T TIGR00262 229 AIVKI 233 (256)
T ss_pred HHHHH
Confidence 87754
No 119
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=96.21 E-value=0.71 Score=47.99 Aligned_cols=216 Identities=17% Similarity=0.198 Sum_probs=113.7
Q ss_pred hHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-cceEeeCCC----CCCCHHHHHHHHHH
Q 010948 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIGDGDN----GYGNAMNVKRTVKG 173 (497)
Q Consensus 99 alSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-iPVIaD~Dt----GYG~~~~V~rtVk~ 173 (497)
.--|+.+.++|. +..+++.+.+ +-.|+ .....+.+..... .|+++-.-. || +...+.+.++.
T Consensus 72 ~~La~~a~~~g~-~~~~Gs~~~~---~~~~e--------~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~-~~~~~~~~i~~ 138 (326)
T cd02811 72 RNLAEAAEELGI-AMGVGSQRAA---LEDPE--------LAESFTVVREAPPNGPLIANLGAVQLNGY-GVEEARRAVEM 138 (326)
T ss_pred HHHHHHHHHcCC-CeEecCchhh---ccChh--------hhhHHHHHHHhCCCceEEeecCccccCCC-CHHHHHHHHHh
Confidence 344566777776 3444543321 11232 2233344544454 887765543 32 34555655544
Q ss_pred HHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcC
Q 010948 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (497)
Q Consensus 174 l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAG 253 (497)
+ ++.+--+|+.- +.......+.+ +.+..++.|+++++.. +.++++ +--.. + -..+-|+.++++|
T Consensus 139 ~-~adalel~l~~---~q~~~~~~~~~--df~~~~~~i~~l~~~~---~vPViv--K~~g~---g--~s~~~a~~l~~~G 202 (326)
T cd02811 139 I-EADALAIHLNP---LQEAVQPEGDR--DFRGWLERIEELVKAL---SVPVIV--KEVGF---G--ISRETAKRLADAG 202 (326)
T ss_pred c-CCCcEEEeCcc---hHhhcCCCCCc--CHHHHHHHHHHHHHhc---CCCEEE--EecCC---C--CCHHHHHHHHHcC
Confidence 4 45555555521 00111111211 2344567788777663 234443 31111 1 1146788899999
Q ss_pred CCEEEeccC-----------------------------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCC
Q 010948 254 ADVLFIDAL-----------------------------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGF 304 (497)
Q Consensus 254 AD~IfIeg~-----------------------------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv 304 (497)
+|+|.+.+. ++.+.+..+.+.++.+|+ +..||-.-..+....-.+|.
T Consensus 203 vd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipI----iasGGIr~~~dv~kal~lGA 278 (326)
T cd02811 203 VKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPL----IASGGIRNGLDIAKALALGA 278 (326)
T ss_pred CCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcE----EEECCCCCHHHHHHHHHhCC
Confidence 999997652 223455555555533443 33445333345666777899
Q ss_pred CEEeccchHHHHHHHHH---HHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHH
Q 010948 305 KLVAYPLSLIGVSVRAM---QDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEE 357 (497)
Q Consensus 305 ~~Vsyp~~ll~aa~~Am---~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~ 357 (497)
+.|.++..++.+.+... ...++.++.. ++.+..+.|+....++
T Consensus 279 d~V~i~~~~L~~~~~g~~~~~~~i~~~~~e----------l~~~m~~~G~~si~el 324 (326)
T cd02811 279 DLVGMAGPFLKAALEGEEAVIETIEQIIEE----------LRTAMFLTGAKNLAEL 324 (326)
T ss_pred CEEEEcHHHHHHHhcCHHHHHHHHHHHHHH----------HHHHHHHhCCCCHHHh
Confidence 99999998888876422 2344433322 3455566666666554
No 120
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.21 E-value=0.12 Score=53.54 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhCccEEEecCCC--------CC---CCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccc
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDS 233 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~--------~p---KrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA 233 (497)
...+++++.+++|.+||.|--.- +| +|-..-+| .+. ..+...+.|++++++ .|+||.|..|.-.
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGg-sl~nr~rf~~eiv~aIR~~---vG~d~~v~vri~~ 230 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGG-SLENRMRFLLEVVDAVRAV---WPEDKPLFVRISA 230 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCC-CHHHHhHHHHHHHHHHHHH---cCCCceEEEEEcc
Confidence 34556678888999999996431 12 22212223 222 223344455555544 4778888888442
Q ss_pred h----hcccHHHHHHHHHHHHhcCCCEEEecc----------C---CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCH
Q 010948 234 R----QALSLEESLRRSRAFADAGADVLFIDA----------L---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP 296 (497)
Q Consensus 234 ~----~~~~ldeaIeRAkAY~eAGAD~IfIeg----------~---~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~ 296 (497)
. ....++++++-+++++++|.|.|=+.. . ...+.++++.+.++ +|++.+ ++-+..-..
T Consensus 231 ~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~----G~i~t~~~a 305 (336)
T cd02932 231 TDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAG-IPVIAV----GLITDPEQA 305 (336)
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCC-CCEEEe----CCCCCHHHH
Confidence 1 234589999999999999999886531 1 12356667777765 565432 221111134
Q ss_pred HHHHhcC-CCEEeccchH
Q 010948 297 LELEELG-FKLVAYPLSL 313 (497)
Q Consensus 297 ~eL~elG-v~~Vsyp~~l 313 (497)
+++-+-| +..|.++-.+
T Consensus 306 ~~~l~~g~aD~V~~gR~~ 323 (336)
T cd02932 306 EAILESGRADLVALGREL 323 (336)
T ss_pred HHHHHcCCCCeehhhHHH
Confidence 5555556 7777665443
No 121
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=96.16 E-value=0.087 Score=55.79 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=75.2
Q ss_pred HHHHHhhcCcceEeeCCCC-CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtG-YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
+|++....+.|+++=+=.- .| ++....+.+..+++.|+++|+... .++..+..|.+|=+..++.+++...
T Consensus 121 ~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde--------~~ge~~~~~~eER~~~v~~av~~a~ 192 (367)
T cd08205 121 LRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDE--------LLADQPYAPFEERVRACMEAVRRAN 192 (367)
T ss_pred HHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccc--------cccCcccCCHHHHHHHHHHHHHHHH
Confidence 5666666677766542221 13 678899999999999999998632 3455667788877777776665544
Q ss_pred -hcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC
Q 010948 220 -ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL 262 (497)
Q Consensus 220 -~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~ 262 (497)
+.|...++.+-..+ ..+|+++|++..+++|||++++--+
T Consensus 193 ~~TG~~~~y~~nit~----~~~e~i~~a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 193 EETGRKTLYAPNITG----DPDELRRRADRAVEAGANALLINPN 232 (367)
T ss_pred HhhCCcceEEEEcCC----CHHHHHHHHHHHHHcCCCEEEEecc
Confidence 33433444444332 2489999999999999999998654
No 122
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.13 E-value=0.12 Score=52.40 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=87.1
Q ss_pred HHHHHHHhC-CcEEEec-chhhhhhhcc-cCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHh
Q 010948 101 SAKLVEKSG-FSFCFTS-GFSISAARLA-LPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (497)
Q Consensus 101 SAriae~aG-fdAI~vS-G~avSas~lG-~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~A 177 (497)
.|+.++++| ||+|=+- |.-. ...| +.. .-..+.+.+.++.|.+.+++||++-+-.. ..++.+.++.++++
T Consensus 109 ~a~~~~~aG~~D~iElN~~cP~--~~~gg~~~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---~~~~~~~a~~l~~~ 181 (301)
T PRK07259 109 VAEKLSKAPNVDAIELNISCPN--VKHGGMAF--GTDPELAYEVVKAVKEVVKVPVIVKLTPN---VTDIVEIAKAAEEA 181 (301)
T ss_pred HHHHHhccCCcCEEEEECCCCC--CCCCcccc--ccCHHHHHHHHHHHHHhcCCCEEEEcCCC---chhHHHHHHHHHHc
Confidence 466777888 9999764 2111 1122 111 12456677778888888899999988532 23667788899999
Q ss_pred CccEEEecCCCC----------C---CCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHH
Q 010948 178 GFAGIILEDQVS----------P---KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLR 244 (497)
Q Consensus 178 GaAGI~IEDq~~----------p---KrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIe 244 (497)
|++||.+-.... | ..+|...|..+.|. ..+.++.++++ .+.+++-+++-.. -+
T Consensus 182 G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~--~l~~v~~i~~~---~~ipvi~~GGI~~---------~~ 247 (301)
T PRK07259 182 GADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPI--ALRMVYQVYQA---VDIPIIGMGGISS---------AE 247 (301)
T ss_pred CCCEEEEEccccccccccccCceeecCCcCccCCcCcccc--cHHHHHHHHHh---CCCCEEEECCCCC---------HH
Confidence 999998743210 1 01232334444333 23333333332 2334444444322 24
Q ss_pred HHHHHHhcCCCEEEecc--CCCHHHHHHHHHh
Q 010948 245 RSRAFADAGADVLFIDA--LASKEEMKAFCEI 274 (497)
Q Consensus 245 RAkAY~eAGAD~IfIeg--~~s~eei~~i~~~ 274 (497)
.+..+.++|||+|.+-. +.+++.+.++.+.
T Consensus 248 da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~ 279 (301)
T PRK07259 248 DAIEFIMAGASAVQVGTANFYDPYAFPKIIEG 279 (301)
T ss_pred HHHHHHHcCCCceeEcHHHhcCcHHHHHHHHH
Confidence 45566679999998732 2345556665554
No 123
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.13 E-value=0.14 Score=52.25 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=83.8
Q ss_pred HHHHHHHhCCcEEEec-chhhhhhhcccCCCC---CCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHH
Q 010948 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTG---FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (497)
Q Consensus 101 SAriae~aGfdAI~vS-G~avSas~lG~PD~g---~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~ 176 (497)
.|+.++++|++++=+- |.-.. -+....+ .-..+.+.+.++.+.+.+++||++=+--.+ .++.+.++.+.+
T Consensus 118 ~a~~~~~~gad~ielN~sCP~~---~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~---~~~~~~a~~~~~ 191 (299)
T cd02940 118 LAKLVEEAGADALELNFSCPHG---MPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNI---TDIREIARAAKE 191 (299)
T ss_pred HHHHHHhcCCCEEEEECCCCCC---CCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCc---hhHHHHHHHHHH
Confidence 4566777888887764 32211 0111111 123456667777887778899999886543 356777788899
Q ss_pred hCccEEEecCCCC-----------CC-------CCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhccc
Q 010948 177 AGFAGIILEDQVS-----------PK-------GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALS 238 (497)
Q Consensus 177 AGaAGI~IEDq~~-----------pK-------rCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ 238 (497)
+||+||.+=.... |. +.|...|+.+-|.. .+.|+.++++. ++++-|+|-.+-..
T Consensus 192 ~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~--l~~v~~~~~~~---~~~ipIig~GGI~~--- 263 (299)
T cd02940 192 GGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIA--LRAVSQIARAP---EPGLPISGIGGIES--- 263 (299)
T ss_pred cCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHH--HHHHHHHHHhc---CCCCcEEEECCCCC---
Confidence 9999997532110 11 12333455554442 33444444332 24688888766643
Q ss_pred HHHHHHHHHHHHhcCCCEEEec
Q 010948 239 LEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 239 ldeaIeRAkAY~eAGAD~IfIe 260 (497)
. +.+..|..||||+|.+=
T Consensus 264 ~----~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 264 W----EDAAEFLLLGASVVQVC 281 (299)
T ss_pred H----HHHHHHHHcCCChheEc
Confidence 2 34555667999999873
No 124
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.11 E-value=2.4 Score=45.05 Aligned_cols=225 Identities=15% Similarity=0.139 Sum_probs=144.6
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-cc
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IP 152 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-iP 152 (497)
.+-|....+.+-.+-+.|+||.-+++. +|+.+.+.|+--+-+.. .+ ..++.+...++..++... +|
T Consensus 7 k~lL~~A~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~----~~-----~g~~~~~~~~~~~a~~~~~VP 77 (347)
T PRK09196 7 RQLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGAR----KY-----AGEPFLRHLILAAVEEYPHIP 77 (347)
T ss_pred HHHHHHHHHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHh----hh-----CCHHHHHHHHHHHHHhCCCCc
Confidence 345666666666788999999999865 46679999987654421 12 224556667777777665 99
Q ss_pred eEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCC-CCccccCHHHHHHHHHHHHHHHHhcCCC----eEE
Q 010948 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT-RGRKVVSREEAVMRIKAAVDARKESGSD----IVI 227 (497)
Q Consensus 153 VIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~-~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvI 227 (497)
|.+=.|+|. +.+ .+++.+++|...|.|... |. +++.-.|.||-+++-+.+++.++..|.. +=-
T Consensus 78 ValHLDHg~-~~e----~i~~ai~~GftSVMiDgS-------~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~ 145 (347)
T PRK09196 78 VVMHQDHGN-SPA----TCQRAIQLGFTSVMMDGS-------LKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGC 145 (347)
T ss_pred EEEECCCCC-CHH----HHHHHHHcCCCEEEecCC-------CCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 999999994 333 356677899999999543 33 2344568899888888888887654421 111
Q ss_pred EEec--------cchhccc---HHH---HHHHHHHHH-hcCCCEEEe-----ccC-----------CCHHHHHHHHHhCC
Q 010948 228 VART--------DSRQALS---LEE---SLRRSRAFA-DAGADVLFI-----DAL-----------ASKEEMKAFCEISP 276 (497)
Q Consensus 228 iART--------DA~~~~~---lde---aIeRAkAY~-eAGAD~IfI-----eg~-----------~s~eei~~i~~~v~ 276 (497)
++-. |...... .+. --+.|+.|. +-|+|++=| +|. -+.+.+++|.+.++
T Consensus 146 vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~ 225 (347)
T PRK09196 146 LGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP 225 (347)
T ss_pred ccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC
Confidence 1111 1000000 000 134566666 579998753 333 13457888888875
Q ss_pred CCCccceeeecCCCCC------------------CCCH---HHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 010948 277 LVPKMANMLEGGGKTP------------------ILNP---LELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (497)
Q Consensus 277 ~vP~~~N~l~~~g~tP------------------~lt~---~eL~elGv~~Vsyp~~ll~aa~~Am~~al~ 326 (497)
.+|+ ++.++..+| .++. .+.-++|++-|=+..-+..+..+++++.+.
T Consensus 226 ~vPL---VLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~ 293 (347)
T PRK09196 226 NTHL---VMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLA 293 (347)
T ss_pred CCCE---EEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHH
Confidence 4675 466543332 1144 455578999999999999999999988864
No 125
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.10 E-value=0.12 Score=51.84 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=57.7
Q ss_pred HHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCc
Q 010948 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (497)
Q Consensus 101 SAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGa 179 (497)
.|+.++++|+|+|-+- |.-.. .+..+ ..-..+.+.+.++.|.+.+++||++-+-.++ +.+++.+.++.++++||
T Consensus 116 ~a~~~~~~G~d~ielN~~cP~~---~~~~~-~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-~~~~~~~~a~~l~~~Ga 190 (289)
T cd02810 116 LARKIERAGAKALELNLSCPNV---GGGRQ-LGQDPEAVANLLKAVKAAVDIPLLVKLSPYF-DLEDIVELAKAAERAGA 190 (289)
T ss_pred HHHHHHHhCCCEEEEEcCCCCC---CCCcc-cccCHHHHHHHHHHHHHccCCCEEEEeCCCC-CHHHHHHHHHHHHHcCC
Confidence 3677778899999876 32211 11112 1234556677788888878999999988765 34567888899999999
Q ss_pred cEEEecCC
Q 010948 180 AGIILEDQ 187 (497)
Q Consensus 180 AGI~IEDq 187 (497)
++|.+-..
T Consensus 191 d~i~~~~~ 198 (289)
T cd02810 191 DGLTAINT 198 (289)
T ss_pred CEEEEEcc
Confidence 99998654
No 126
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.09 E-value=0.1 Score=51.73 Aligned_cols=174 Identities=16% Similarity=0.199 Sum_probs=98.4
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
-|+.+++.|++.+++....-+ ..+. ...++.++.|++.+++||+++. |..+... ++++.+.|++
T Consensus 35 ~a~~~~~~G~~~i~i~dl~~~--~~~~--------~~~~~~i~~i~~~~~ipv~~~G--Gi~s~~~----~~~~l~~Ga~ 98 (253)
T PRK02083 35 LAKRYNEEGADELVFLDITAS--SEGR--------DTMLDVVERVAEQVFIPLTVGG--GIRSVED----ARRLLRAGAD 98 (253)
T ss_pred HHHHHHHcCCCEEEEEeCCcc--cccC--------cchHHHHHHHHHhCCCCEEeeC--CCCCHHH----HHHHHHcCCC
Confidence 457778899999999865421 1111 1346677788888899998873 3334333 4455668999
Q ss_pred EEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----------------eEEEEeccchhcccHHHHHH
Q 010948 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----------------IVIVARTDSRQALSLEESLR 244 (497)
Q Consensus 181 GI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----------------fvIiARTDA~~~~~ldeaIe 244 (497)
+|.| +... +-.+ +++.+|.+.. |.+ +.|.-|.-.. ... ...++
T Consensus 99 ~Vii-gt~~-----------l~~p-~~~~ei~~~~------g~~~iv~slD~~~~~~~~~~~v~~~~~~~-~~~-~~~~~ 157 (253)
T PRK02083 99 KVSI-NSAA-----------VANP-ELISEAADRF------GSQCIVVAIDAKRDPEPGRWEVYTHGGRK-PTG-LDAVE 157 (253)
T ss_pred EEEE-ChhH-----------hhCc-HHHHHHHHHc------CCCCEEEEEEeccCCCCCCEEEEEcCCce-ecC-CCHHH
Confidence 9987 3210 1122 2344443221 111 1111111100 001 13466
Q ss_pred HHHHHHhcCCCEEEeccCC--------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHh-cCCCEEeccchHHH
Q 010948 245 RSRAFADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEE-LGFKLVAYPLSLIG 315 (497)
Q Consensus 245 RAkAY~eAGAD~IfIeg~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~e-lGv~~Vsyp~~ll~ 315 (497)
.++.+.++|++.+.+..+. +.+.++++++.++ +|+.+ .||-...-++.++.+ .|+.-|+.+..+..
T Consensus 158 ~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~-ipvia----~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 158 WAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVN-VPVIA----SGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCC-CCEEE----ECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 6778889999998886543 3577888888765 56543 334221113334444 49999988877664
Q ss_pred H
Q 010948 316 V 316 (497)
Q Consensus 316 a 316 (497)
-
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 3
No 127
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=96.09 E-value=0.12 Score=47.63 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH
Q 010948 137 EMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD 216 (497)
Q Consensus 137 Eml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~ 216 (497)
+.+..++.++...++++++.. -++.+.++|++|+|++.... +.. .+.++
T Consensus 43 ~~~~~i~~~~~~~~~~l~~~~------------~~~~a~~~g~~~vh~~~~~~-------------~~~-~~~~~----- 91 (196)
T cd00564 43 ELARALRELCRKYGVPLIIND------------RVDLALAVGADGVHLGQDDL-------------PVA-EARAL----- 91 (196)
T ss_pred HHHHHHHHHHHHhCCeEEEeC------------hHHHHHHcCCCEEecCcccC-------------CHH-HHHHH-----
Confidence 445555555555678888752 13456789999999997421 111 11111
Q ss_pred HHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEecc------------CCCHHHHHHHHHhCCCCCcccee
Q 010948 217 ARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA------------LASKEEMKAFCEISPLVPKMANM 284 (497)
Q Consensus 217 Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg------------~~s~eei~~i~~~v~~vP~~~N~ 284 (497)
. +.+..+-..+. . .+.++.+.++|+|.|++.. ....+.++++++... +|+ ..
T Consensus 92 -~---~~~~~~g~~~~-----t----~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv--~a 155 (196)
T cd00564 92 -L---GPDLIIGVSTH-----S----LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVE-IPV--VA 155 (196)
T ss_pred -c---CCCCEEEeeCC-----C----HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCC-CCE--EE
Confidence 1 22444444332 1 2456677889999998742 233567777766532 443 22
Q ss_pred eecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 285 LEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 285 l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
. ||-++ -+..++.++|+..+..+..++.
T Consensus 156 ~--GGi~~-~~i~~~~~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 156 I--GGITP-ENAAEVLAAGADGVAVISAITG 183 (196)
T ss_pred E--CCCCH-HHHHHHHHcCCCEEEEehHhhc
Confidence 2 34332 4678999999999999887764
No 128
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.02 E-value=2.6 Score=44.68 Aligned_cols=228 Identities=10% Similarity=0.050 Sum_probs=144.7
Q ss_pred HHHHHHhCCCceeecccCChHHHH----HHHHhCCcEEEecch-hhhhhhcc------cCCCCC-CCHHHHHHHHHHHHh
Q 010948 80 SLRQILELPGVHQGPACFDALSAK----LVEKSGFSFCFTSGF-SISAARLA------LPDTGF-ISYGEMVDQGQLITQ 147 (497)
Q Consensus 80 ~Lr~ll~~~~~iv~p~ayDalSAr----iae~aGfdAI~vSG~-avSas~lG------~PD~g~-ltldEml~~~r~I~r 147 (497)
-|....+.+-.+.+.|||+.-+++ .+|+.+.++|+..+- +.. ...| .||+.. +-+..+...++.++.
T Consensus 4 ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 82 (340)
T cd00453 4 VFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGAS-FIAGKGVKSDVPQGAAILGAISGAHHVHQMAE 82 (340)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHH-HhCCCcccccccchhhhhhHHHHHHHHHHHHH
Confidence 455666666678899999999984 456679999988765 332 2334 355433 336678888888998
Q ss_pred hcCcceEeeCCCCCCCHHHHHHHHHHHHHhC-----------ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH
Q 010948 148 AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG-----------FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD 216 (497)
Q Consensus 148 a~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG-----------aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~ 216 (497)
..++||.+=.|+|.-.. ...+++.+++| ...|.|... | .|.||-++.-+.+++
T Consensus 83 ~~~VPV~lHLDH~~~~~---~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS-------~------l~~eeNi~~T~~vve 146 (340)
T cd00453 83 HYGVPVILHTDHCAKKL---LPWIDGLLDAGEKHFAATGKPLFSSHMIDLS-------E------ESLQENIEICSKYLE 146 (340)
T ss_pred HCCCCEEEEcCCCCCCC---HHHHHHHHHcCCccccccCCCCceeEEecCC-------C------CCHHHHHHHHHHHHH
Confidence 88999999999996211 35677888999 888888432 2 467887777777777
Q ss_pred HHHhcCCC----eEEEE-eccchhcccHH-H----HHHHHHHHH-hcC----CCEEEe-----ccC-------CCHHHHH
Q 010948 217 ARKESGSD----IVIVA-RTDSRQALSLE-E----SLRRSRAFA-DAG----ADVLFI-----DAL-------ASKEEMK 269 (497)
Q Consensus 217 Ar~~~g~d----fvIiA-RTDA~~~~~ld-e----aIeRAkAY~-eAG----AD~IfI-----eg~-------~s~eei~ 269 (497)
.++..|.. +=.++ ..|.......+ + --+.|..|. +-| +|++=+ +|+ -+.+.++
T Consensus 147 ~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~ 226 (340)
T cd00453 147 RMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILR 226 (340)
T ss_pred HHHHcCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHH
Confidence 76643311 11111 11110000000 0 134455555 578 887643 332 1456777
Q ss_pred HHHHhCC--------CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 010948 270 AFCEISP--------LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (497)
Q Consensus 270 ~i~~~v~--------~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~ 327 (497)
++.+.++ .+|+ ++.++..+|.-.+.+.-+.|++-|=+..-+..+.+.++++.+.+
T Consensus 227 ~i~~~~~~~~gl~~~~~pL---VlHGgSG~~~e~~~~ai~~Gi~KiNi~Te~~~A~~~~~~~~~~~ 289 (340)
T cd00453 227 DSQEYVSKKHNLPHNSLNF---VFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKA 289 (340)
T ss_pred HHHHHHHhhcccCCCCCce---EEeCCCCCCHHHHHHHHHcCCeEEEcccHHHHHHHHHHHHHHHh
Confidence 7777662 3443 45554334433345555789999999999999999999888753
No 129
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.89 E-value=0.2 Score=51.51 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=91.6
Q ss_pred CCce-eecccCCh----HHHHHHHHhCCcEEEec-chhhhhhhcccCCCCC--C-CHHHHHHHHHHHHhhcCcceEeeCC
Q 010948 88 PGVH-QGPACFDA----LSAKLVEKSGFSFCFTS-GFSISAARLALPDTGF--I-SYGEMVDQGQLITQAVSIPVIGDGD 158 (497)
Q Consensus 88 ~~~i-v~p~ayDa----lSAriae~aGfdAI~vS-G~avSas~lG~PD~g~--l-tldEml~~~r~I~ra~~iPVIaD~D 158 (497)
+.++ +-.+..|+ -.|+.++++|||+|=+- |.-. .-.. -.-.|. + ..+-+.+.++.|..++++||++-+-
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~-~~~~-~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir 139 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPV-PKIT-KKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIR 139 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCH-HHhc-CCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEE
Confidence 3443 33455555 34567778999999775 3221 1000 001121 1 3456677788888888999999987
Q ss_pred CCCCC-HHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcc
Q 010948 159 NGYGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (497)
Q Consensus 159 tGYG~-~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~ 237 (497)
.|+.. .....+.++.+.++|+++|.+-... +.+++.++ ..-+++.+ ++++ .+.+++.++....
T Consensus 140 ~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~--~~~~~~~~----~~~~~i~~---i~~~---~~ipvi~nGgI~~---- 203 (319)
T TIGR00737 140 IGWDDAHINAVEAARIAEDAGAQAVTLHGRT--RAQGYSGE----ANWDIIAR---VKQA---VRIPVIGNGDIFS---- 203 (319)
T ss_pred cccCCCcchHHHHHHHHHHhCCCEEEEEccc--ccccCCCc----hhHHHHHH---HHHc---CCCcEEEeCCCCC----
Confidence 77643 2356678899999999999995432 22333221 11233333 3333 2334555554332
Q ss_pred cHHHHHHHHHHHH-hcCCCEEEec--cCCCHHHHHHHHHh
Q 010948 238 SLEESLRRSRAFA-DAGADVLFID--ALASKEEMKAFCEI 274 (497)
Q Consensus 238 ~ldeaIeRAkAY~-eAGAD~IfIe--g~~s~eei~~i~~~ 274 (497)
.+.+..+. +.|||+|++- .+.++..+.++.+.
T Consensus 204 -----~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~ 238 (319)
T TIGR00737 204 -----PEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQY 238 (319)
T ss_pred -----HHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHH
Confidence 13344444 5799999983 23444455555443
No 130
>PRK00208 thiG thiazole synthase; Reviewed
Probab=95.89 E-value=0.13 Score=52.10 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=101.8
Q ss_pred ccccCCCCCccceeecceeeecccchh--hhhhcccCCCCcceeeccccCCCccccccCcHHHHHHHHHhCCCceee-cc
Q 010948 19 LFHSNSRPSSFLGINNNTISFNKTNTN--TLLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQG-PA 95 (497)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~pr~~~~~R~y~rgs~~i~~a~~~a~~Lr~ll~~~~~iv~-p~ 95 (497)
+|-..-.++.+-+++|-+=-.+-+... ..+......-+|..+.=.--.-.+-.+. ...-+.-++|.+ .+..++ .+
T Consensus 53 ~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~-~~tv~aa~~L~~-~Gf~vlpyc 130 (250)
T PRK00208 53 NLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDP-IETLKAAEILVK-EGFVVLPYC 130 (250)
T ss_pred hHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCH-HHHHHHHHHHHH-CCCEEEEEe
Confidence 344444556777778876554444332 3344556666787663222111111111 111233445554 457788 58
Q ss_pred cCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHH
Q 010948 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (497)
Q Consensus 96 ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~ 175 (497)
+=|...|+.++++|.++|..-|.-+. + | .+..+ .++ ++.|.+..++|||+|+ |.+.+.++++. .
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIG-s--g---~gi~~-~~~---i~~i~e~~~vpVIvea--GI~tpeda~~A----m 194 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIG-S--G---LGLLN-PYN---LRIIIEQADVPVIVDA--GIGTPSDAAQA----M 194 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-C--C---CCCCC-HHH---HHHHHHhcCCeEEEeC--CCCCHHHHHHH----H
Confidence 88999999999999999955232221 1 1 22223 444 5555555689999994 78888777744 4
Q ss_pred HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 176 ~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
+.|++||.+--... .. -++..++++++.++++.+
T Consensus 195 elGAdgVlV~SAIt------ka----~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 195 ELGADAVLLNTAIA------VA----GDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HcCCCEEEEChHhh------CC----CCHHHHHHHHHHHHHHHH
Confidence 68999999865541 11 124677777777777654
No 131
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=95.88 E-value=1.8 Score=46.11 Aligned_cols=228 Identities=11% Similarity=0.012 Sum_probs=139.2
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchhhhhhhcc---cCCC----CCCCHHHHHHHHHHHHh
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLA---LPDT----GFISYGEMVDQGQLITQ 147 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAria----e~aGfdAI~vSG~avSas~lG---~PD~----g~ltldEml~~~r~I~r 147 (497)
+-|....+.+-.+.+.|+|+.-+++.+ |+...+.|+..+-+.. ..+| +++. -......+...++..++
T Consensus 11 ~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~ 89 (350)
T PRK09197 11 EMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGA-AFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAE 89 (350)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhH-hhcCCccccccchhhhhhhHHHHHHHHHHHHH
Confidence 344444555556888999999998654 5668999987754432 2223 3331 11223347778888888
Q ss_pred hcCcceEeeCCCCCCC-HHHHH-------HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 148 AVSIPVIGDGDNGYGN-AMNVK-------RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 148 a~~iPVIaD~DtGYG~-~~~V~-------rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
..++||.+=.|+|.-. ...+. +.+++-+++|...|.|... | .|.||=+++-+.+++.++
T Consensus 90 ~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS-------~------lpfEeNI~~TkevVe~Ah 156 (350)
T PRK09197 90 HYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLS-------E------EPLEENIEICSKYLERMA 156 (350)
T ss_pred HCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCC-------C------CCHHHHHHHHHHHHHHHH
Confidence 8899999999999542 22222 2223333445999988432 3 467888888888777776
Q ss_pred hcCCC----eEEEEe-ccch---h------cccHHHHHHHHHHHH-hcCC----CEEEe-----ccCC-------CHHHH
Q 010948 220 ESGSD----IVIVAR-TDSR---Q------ALSLEESLRRSRAFA-DAGA----DVLFI-----DALA-------SKEEM 268 (497)
Q Consensus 220 ~~g~d----fvIiAR-TDA~---~------~~~ldeaIeRAkAY~-eAGA----D~IfI-----eg~~-------s~eei 268 (497)
..|.. +=-++. .|.. . -... +.|+.|. +-|+ |++-| +|.. +.+.+
T Consensus 157 ~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdP----eeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L 232 (350)
T PRK09197 157 KAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQP----EDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEIL 232 (350)
T ss_pred HcCCEEEEEEeccCCCcCCccccccccccccCCH----HHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHH
Confidence 43311 111111 1110 0 0122 4455555 4577 87654 3331 45677
Q ss_pred HHHHHhCC--------CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 010948 269 KAFCEISP--------LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (497)
Q Consensus 269 ~~i~~~v~--------~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~ 327 (497)
++|.+.++ .+|+ ++.++..+|.-.+.+.-++|++-|=+...+..+...++++.+..
T Consensus 233 ~~I~~~v~~~~~~~~~~vPL---VLHGgSGipde~i~~ai~~GI~KINi~T~l~~a~~~~~~~~~~~ 296 (350)
T PRK09197 233 KDSQEYVSKKFGLPAKPFDF---VFHGGSGSTLEEIREAVSYGVVKMNIDTDTQWAFWRGVLDYYFK 296 (350)
T ss_pred HHHHHHHHHhhCCCCCCCCE---EEeCCCCCCHHHHHHHHHCCCeeEEeCcHHHHHHHHHHHHHHHh
Confidence 88877761 3564 45554334433345556789999999999999999999998754
No 132
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.88 E-value=1.9 Score=45.76 Aligned_cols=232 Identities=11% Similarity=-0.030 Sum_probs=139.3
Q ss_pred HHHHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCC-------CCCHHHHHHHHHHHHh
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTG-------FISYGEMVDQGQLITQ 147 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g-------~ltldEml~~~r~I~r 147 (497)
+-|....+.+-.+.+.|+|+.-+++. +|+.+.++|+-.+-+.+ ..++..... ....-.+...++.++.
T Consensus 6 ~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~ 84 (345)
T cd00946 6 KLFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGA-AFYAGKGLKNEKQKASIAGAIAAAHHVRSMAE 84 (345)
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHH-hhcCCccccccchhhhhhhHHHHHHHHHHHHH
Confidence 34555555555688899999999865 46679999987765532 122322000 0112256777788888
Q ss_pred hcCcceEeeCCCCCCC----HHHHHHH----HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 148 AVSIPVIGDGDNGYGN----AMNVKRT----VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 148 a~~iPVIaD~DtGYG~----~~~V~rt----Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
..++||.+=.|+|.-. ...+.++ +++.+++|...|.|... | .|.||-++.-+.+++-++
T Consensus 85 ~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS-------~------lp~eENI~~TkevVe~Ah 151 (345)
T cd00946 85 HYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLS-------E------EPLEENIEICKKYLERMA 151 (345)
T ss_pred HCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCC-------C------CCHHHHHHHHHHHHHHHH
Confidence 8899999999999641 2233333 34445779999999432 3 467888888888877766
Q ss_pred hcCCC----eEEEE-eccchhcc-----cHHHHHHHHHHHHhc-----CCCEEEe-----ccCC-------CHHHHHHH-
Q 010948 220 ESGSD----IVIVA-RTDSRQAL-----SLEESLRRSRAFADA-----GADVLFI-----DALA-------SKEEMKAF- 271 (497)
Q Consensus 220 ~~g~d----fvIiA-RTDA~~~~-----~ldeaIeRAkAY~eA-----GAD~IfI-----eg~~-------s~eei~~i- 271 (497)
..|.. +=-++ .-|..... .+----+.|+.|.+. |+|++=+ +|+. +.+.++++
T Consensus 152 ~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~ 231 (345)
T cd00946 152 KINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQ 231 (345)
T ss_pred HcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHH
Confidence 43311 11111 11110000 000012456666664 8897653 4432 35667777
Q ss_pred ---HHhCC-----CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 010948 272 ---CEISP-----LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (497)
Q Consensus 272 ---~~~v~-----~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~ 327 (497)
.+.++ .+|+ ++.++..+|.-.+.+.-+.|++-|=+...+..+..+++++.+..
T Consensus 232 ~~i~~~~~~~~~~~ipL---VLHGgSG~~~e~i~kai~~GI~KiNi~T~l~~a~~~~i~~~~~~ 292 (345)
T cd00946 232 DYVREKLGLADDKPLYF---VFHGGSGSTKEEIREAISYGVVKMNIDTDTQWAYWEGVRNYYLK 292 (345)
T ss_pred HHHHHhhccccCCCCCE---EEeCCCCCCHHHHHHHHHcCCeeEEeCcHHHHHHHHHHHHHHhh
Confidence 44442 1343 45654434433345555789999999999999999999998753
No 133
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.83 E-value=1.2 Score=45.02 Aligned_cols=87 Identities=11% Similarity=0.193 Sum_probs=62.4
Q ss_pred HHHHHHhCCCcee--ecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC
Q 010948 80 SLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (497)
Q Consensus 80 ~Lr~ll~~~~~iv--~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~ 157 (497)
.|+++++++++++ .....++..+.++..+|||.+++=- . | +.++++++.+.++.+ +..+++.+|=.
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD~-E-----H-----g~~~~~~~~~~i~a~-~~~g~~~lVRv 76 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVLDG-E-----H-----APNDVSTFIPQLMAL-KGSASAPVVRV 76 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEcc-c-----c-----CCCCHHHHHHHHHHH-hhcCCCcEEEC
Confidence 5889998888754 2356788999999999999999752 1 2 346777777777665 55667777766
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 158 DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
+.. ++ ..+++..++|+.||.+
T Consensus 77 p~~--~~----~~i~r~LD~Ga~giiv 97 (256)
T PRK10558 77 PTN--EP----VIIKRLLDIGFYNFLI 97 (256)
T ss_pred CCC--CH----HHHHHHhCCCCCeeee
Confidence 554 33 3446677899999966
No 134
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=95.81 E-value=0.46 Score=48.41 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=102.6
Q ss_pred eeecccc-CCCccccccCcHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhh-------hhhhcccCC-
Q 010948 59 NRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSI-------SAARLALPD- 129 (497)
Q Consensus 59 ~~~R~y~-rgs~~i~~a~~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~av-------Sas~lG~PD- 129 (497)
.+++||+ ||. +++ ..-+-|++..+.-+.-++-.++|.-.+..+.+. .|.+.++..-+ ++...|.|=
T Consensus 46 pRTsp~sFqG~-G~e---eGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~-vDilQIgArn~rn~~LL~a~g~t~kpV~ 120 (258)
T TIGR01362 46 NRSSIHSFRGP-GLE---EGLKILQKVKEEFGVPILTDVHESSQCEPVAEV-VDIIQIPAFLCRQTDLLVAAAKTGRIVN 120 (258)
T ss_pred CCCCCCCCCCC-CHH---HHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-CcEEEeCchhcchHHHHHHHhccCCeEE
Confidence 5667887 442 221 334556666665566677789999999888887 99999996322 212234432
Q ss_pred ---CCCCCHHHHHHHHHHHHh-------------------------------hcCcceEeeCCCC-----------CCCH
Q 010948 130 ---TGFISYGEMVDQGQLITQ-------------------------------AVSIPVIGDGDNG-----------YGNA 164 (497)
Q Consensus 130 ---~g~ltldEml~~~r~I~r-------------------------------a~~iPVIaD~DtG-----------YG~~ 164 (497)
+..++.+||+..++.|.. ..++|||+|.=++ -|..
T Consensus 121 lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~~~PVi~DpSHsvq~pg~~g~~s~G~r 200 (258)
T TIGR01362 121 VKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMRELGCPVIFDATHSVQQPGGLGGASGGLR 200 (258)
T ss_pred ecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCCCCCCCCCcH
Confidence 345889999998887743 1268999999886 4556
Q ss_pred HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHH
Q 010948 165 MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (497)
Q Consensus 165 ~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAA 214 (497)
.-|....+.-+.+||+|+.||=...|. ....+|...++.+++..-++.+
T Consensus 201 ~~v~~la~AAvA~GaDGl~iEvHpdP~-~AlsDg~q~l~~~~~~~ll~~l 249 (258)
T TIGR01362 201 EFVPTLARAAVAVGIDGLFMETHPDPK-NAKSDGPNMLPLSELEGLLEKL 249 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCcc-ccCCCccccCCHHHHHHHHHHH
Confidence 678888888899999999999766554 2345677777776654444433
No 135
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=95.81 E-value=0.86 Score=47.66 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCccEEEecCCC--------CC---CCCCCCCCccccCH-HHHHHHHHHHHHHHHhcCCCeEEEEeccc
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSR-EEAVMRIKAAVDARKESGSDIVIVARTDS 233 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~--------~p---KrCGH~~gk~lvp~-ee~~~KIrAAv~Ar~~~g~dfvIiARTDA 233 (497)
...+++++.+++|++||.|--.- .| ||-..-+| .+... +-..+-|++++++ .|.+|.|.-|--.
T Consensus 142 ~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~---vg~~~~v~iRl~~ 217 (343)
T cd04734 142 AFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGG-SLENRMRFLLEVLAAVRAA---VGPDFIVGIRISG 217 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCC-CHHHHhHHHHHHHHHHHHH---cCCCCeEEEEeeh
Confidence 34556778889999999887631 23 33233333 23222 2223333333333 3678888878554
Q ss_pred hh----cccHHHHHHHHHHHHhcC-CCEEEec
Q 010948 234 RQ----ALSLEESLRRSRAFADAG-ADVLFID 260 (497)
Q Consensus 234 ~~----~~~ldeaIeRAkAY~eAG-AD~IfIe 260 (497)
.. ...++|+++-++.++++| +|.|-|.
T Consensus 218 ~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 218 DEDTEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 21 135799999999999998 8999873
No 136
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.71 E-value=0.26 Score=48.27 Aligned_cols=154 Identities=22% Similarity=0.270 Sum_probs=96.4
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
+..+.++|++.|=+++....- -+|- +.+-.+.++.+.+.. +.++.+...+| .+.++++.++|+.
T Consensus 25 ~~~L~~~GV~~IEvg~~~~~~---~~p~-----~~~~~~~i~~l~~~~~~~~~~~l~~~~-------~~~i~~a~~~g~~ 89 (265)
T cd03174 25 AEALDEAGVDSIEVGSGASPK---AVPQ-----MEDDWEVLRAIRKLVPNVKLQALVRNR-------EKGIERALEAGVD 89 (265)
T ss_pred HHHHHHcCCCEEEeccCcCcc---cccc-----CCCHHHHHHHHHhccCCcEEEEEccCc-------hhhHHHHHhCCcC
Confidence 345667899999999755321 1121 222333445555544 57787877776 5667888899999
Q ss_pred EEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh-cccHHHHHHHHHHHHhcCCCEEEe
Q 010948 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-ALSLEESLRRSRAFADAGADVLFI 259 (497)
Q Consensus 181 GI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~-~~~ldeaIeRAkAY~eAGAD~IfI 259 (497)
.|+|=+...+ .|...+--.+.++..+++..+.+..++.|..+.+..= ++.. ....++..+.++...++|||.|.+
T Consensus 90 ~i~i~~~~s~---~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 90 EVRIFDSASE---THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE-DAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred EEEEEEecCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE-eecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 9999886532 2221111124455666776666665555544433332 3322 256788889999999999999988
Q ss_pred c---cCCCHHHHHHHHHh
Q 010948 260 D---ALASKEEMKAFCEI 274 (497)
Q Consensus 260 e---g~~s~eei~~i~~~ 274 (497)
. |..+++++.++.+.
T Consensus 166 ~Dt~G~~~P~~v~~li~~ 183 (265)
T cd03174 166 KDTVGLATPEEVAELVKA 183 (265)
T ss_pred chhcCCcCHHHHHHHHHH
Confidence 4 45677777777654
No 137
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=95.70 E-value=0.17 Score=51.15 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=104.0
Q ss_pred ccccCCCCCccceeecceeeecccchh--hhhhcccCCCCcceeeccccCCCccccccCcHHHHHHHHHhCCCceee-cc
Q 010948 19 LFHSNSRPSSFLGINNNTISFNKTNTN--TLLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQG-PA 95 (497)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~pr~~~~~R~y~rgs~~i~~a~~~a~~Lr~ll~~~~~iv~-p~ 95 (497)
+|-..-+++.+-+++|-+=-.+-+... ..+...+..-+|..+.=..-...+-.+. ...-+.-++|.+ .+..++ .+
T Consensus 53 ~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~-~~tv~aa~~L~~-~Gf~vlpyc 130 (248)
T cd04728 53 SFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDP-IETLKAAEILVK-EGFTVLPYC 130 (248)
T ss_pred hHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCH-HHHHHHHHHHHH-CCCEEEEEe
Confidence 343444566778888877655544433 3445566677887764332222222221 111233444554 457777 58
Q ss_pred cCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHH
Q 010948 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (497)
Q Consensus 96 ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~ 175 (497)
+=|...|+-++++|.+++..-|.-+. + | .+..+ .+++ +.|.+..++|||+| .|.+.+.++.+. .
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIG-s--g---~Gi~~-~~~I---~~I~e~~~vpVI~e--gGI~tpeda~~A----m 194 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIG-S--G---QGLLN-PYNL---RIIIERADVPVIVD--AGIGTPSDAAQA----M 194 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-C--C---CCCCC-HHHH---HHHHHhCCCcEEEe--CCCCCHHHHHHH----H
Confidence 88999999999999999955232221 1 1 23223 4444 45555568999998 577788777644 4
Q ss_pred HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 176 ~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
+.|++||.+--.. +.. -++..++.+++.++++.+
T Consensus 195 elGAdgVlV~SAI------t~a----~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 195 ELGADAVLLNTAI------AKA----KDPVAMARAFKLAVEAGR 228 (248)
T ss_pred HcCCCEEEEChHh------cCC----CCHHHHHHHHHHHHHHHH
Confidence 6899999986543 111 135677778877777754
No 138
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.70 E-value=2.9 Score=42.78 Aligned_cols=112 Identities=10% Similarity=0.050 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHhh---cCcceEeeCCCCCCCHHHHHHHHHHHHHh---CccEEEecCCCCCCCCCCCCCc-ccc-CH
Q 010948 133 ISYGEMVDQGQLITQA---VSIPVIGDGDNGYGNAMNVKRTVKGYIKA---GFAGIILEDQVSPKGCGHTRGR-KVV-SR 204 (497)
Q Consensus 133 ltldEml~~~r~I~ra---~~iPVIaD~DtGYG~~~~V~rtVk~l~~A---GaAGI~IEDq~~pKrCGH~~gk-~lv-p~ 204 (497)
..++.++++.+...+. .+.||++-+ +| +++...+.++++++. |+++|-|-=. |.|..++ .+. ..
T Consensus 71 ~g~~~~~~~i~~~~~~~~~~~~pvivsi-~g--~~~~~~~~~~~~~~~~~~~ad~ielN~s-----CPn~~~~~~~~~~~ 142 (294)
T cd04741 71 LGLDYYLEYIRTISDGLPGSAKPFFISV-TG--SAEDIAAMYKKIAAHQKQFPLAMELNLS-----CPNVPGKPPPAYDF 142 (294)
T ss_pred cCHHHHHHHHHHHhhhccccCCeEEEEC-CC--CHHHHHHHHHHHHhhccccccEEEEECC-----CCCCCCcccccCCH
Confidence 3467888887776543 468999988 23 377788888888875 6999877543 6665443 233 45
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhc--CCCEEEe
Q 010948 205 EEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA--GADVLFI 259 (497)
Q Consensus 205 ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eA--GAD~IfI 259 (497)
+.+.+-+++++++. ..++++-=|-+. +.++..+-|+...++ |||.|.+
T Consensus 143 ~~~~~i~~~v~~~~---~iPv~vKl~p~~----~~~~~~~~a~~l~~~~~G~~gi~~ 192 (294)
T cd04741 143 DATLEYLTAVKAAY---SIPVGVKTPPYT----DPAQFDTLAEALNAFACPISFITA 192 (294)
T ss_pred HHHHHHHHHHHHhc---CCCEEEEeCCCC----CHHHHHHHHHHHhccccCCcEEEE
Confidence 55555555554443 245444444332 234555666767777 9998873
No 139
>PRK04302 triosephosphate isomerase; Provisional
Probab=95.69 E-value=0.28 Score=47.91 Aligned_cols=139 Identities=20% Similarity=0.200 Sum_probs=80.8
Q ss_pred hhcCcceEee-CCC-CCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC
Q 010948 147 QAVSIPVIGD-GDN-GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD 224 (497)
Q Consensus 147 ra~~iPVIaD-~Dt-GYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d 224 (497)
+.+++||++- .+. .+|- ..-...++++.++|++||.|-|.. ...+.+|..++++++.+. |-.
T Consensus 53 ~~~~i~v~aq~~~~~~~G~-~tg~~~~~~l~~~G~~~vii~~se-----------r~~~~~e~~~~v~~a~~~----Gl~ 116 (223)
T PRK04302 53 EEVDIPVYAQHVDPVEPGS-HTGHILPEAVKDAGAVGTLINHSE-----------RRLTLADIEAVVERAKKL----GLE 116 (223)
T ss_pred HhcCCeEEeccCCCCCCCC-chhhhHHHHHHHcCCCEEEEeccc-----------cccCHHHHHHHHHHHHHC----CCe
Confidence 3357888862 211 2331 223355788889999999885531 124556666676665543 444
Q ss_pred eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC-----------CCHHHHHHHHHhCC----CCCccceeeecCC
Q 010948 225 IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISP----LVPKMANMLEGGG 289 (497)
Q Consensus 225 fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~-----------~s~eei~~i~~~v~----~vP~~~N~l~~~g 289 (497)
.++...+ .++++...+.|.|.|.++.. .+.+.+.++.+.+. .+| ++.++|
T Consensus 117 ~I~~v~~-----------~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~p----vi~Ggg 181 (223)
T PRK04302 117 SVVCVNN-----------PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVK----VLCGAG 181 (223)
T ss_pred EEEEcCC-----------HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCE----EEEECC
Confidence 4443333 24555667889999987542 23455555544332 233 334444
Q ss_pred CCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 290 KTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 290 ~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
-.+.-..+++.+.|+.-|+.|..++.+
T Consensus 182 I~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 182 ISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 333234567778999999999887754
No 140
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.68 E-value=0.89 Score=44.07 Aligned_cols=145 Identities=20% Similarity=0.179 Sum_probs=80.0
Q ss_pred HHHHHHHhhcCcceE---e-eCCC-C-CCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHH
Q 010948 140 DQGQLITQAVSIPVI---G-DGDN-G-YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (497)
Q Consensus 140 ~~~r~I~ra~~iPVI---a-D~Dt-G-YG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrA 213 (497)
+.++.+.+.+++|++ - |..+ - |-.. ..+.++.+.++||+.|.+ |-. +..........+++++++
T Consensus 46 ~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~--~~~~v~~a~~aGad~I~~-d~~------~~~~p~~~~~~~~i~~~~- 115 (221)
T PRK01130 46 EDIKAIRAVVDVPIIGIIKRDYPDSEVYITP--TLKEVDALAAAGADIIAL-DAT------LRPRPDGETLAELVKRIK- 115 (221)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceECC--CHHHHHHHHHcCCCEEEE-eCC------CCCCCCCCCHHHHHHHHH-
Confidence 345566666789987 2 3111 0 1111 234568888999997766 432 110000012234444432
Q ss_pred HHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEecc-----------CCCHHHHHHHHHhCCCCCccc
Q 010948 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA-----------LASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 214 Av~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg-----------~~s~eei~~i~~~v~~vP~~~ 282 (497)
+. .++.++..+-. .++++...++|+|.|.+.. ....+.++++.+.+. +|++
T Consensus 116 --~~-----~~i~vi~~v~t---------~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvi- 177 (221)
T PRK01130 116 --EY-----PGQLLMADCST---------LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVI- 177 (221)
T ss_pred --hC-----CCCeEEEeCCC---------HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEE-
Confidence 21 24555554432 3456778899999997631 123566777777663 5643
Q ss_pred eeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 283 N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
..+|-.-.-+.+++.++|+..|..|..++.
T Consensus 178 ---a~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 178 ---AEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred ---EECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 333431113567788899999999977654
No 141
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.67 E-value=0.65 Score=46.07 Aligned_cols=174 Identities=14% Similarity=0.191 Sum_probs=103.4
Q ss_pred ChHH-HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHH
Q 010948 98 DALS-AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (497)
Q Consensus 98 DalS-Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~ 176 (497)
|+.. |+..++.|++.+++--+-- + .|.+ .....++.|++.+++||.++ .|..+. +-++++..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~--~-~g~~--------~n~~~i~~i~~~~~~pv~vg--GGirs~----edv~~~l~ 95 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDA--A-FGRG--------SNRELLAEVVGKLDVKVELS--GGIRDD----ESLEAALA 95 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccc--c-CCCC--------ccHHHHHHHHHHcCCCEEEc--CCCCCH----HHHHHHHH
Confidence 5543 5667778999999885431 1 2433 23567788888889999875 344443 44567788
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEE--EEeccchh----cccHHHHHHHHHHHH
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI--VARTDSRQ----ALSLEESLRRSRAFA 250 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvI--iARTDA~~----~~~ldeaIeRAkAY~ 250 (497)
+||.-+.+ +.. .+-+++ ++.++.... +..+++ -.|..... .....+.++-++.+.
T Consensus 96 ~Ga~kvvi-Gs~-----------~l~~p~-l~~~i~~~~------~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~ 156 (241)
T PRK14024 96 TGCARVNI-GTA-----------ALENPE-WCARVIAEH------GDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLD 156 (241)
T ss_pred CCCCEEEE-Cch-----------HhCCHH-HHHHHHHHh------hhhEEEEEEEeccEeccCCeeecCccHHHHHHHHH
Confidence 99998766 221 122333 333332211 111111 11110000 011234577788899
Q ss_pred hcCCCEEEeccCC--------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhc------CCCEEeccchHHH
Q 010948 251 DAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL------GFKLVAYPLSLIG 315 (497)
Q Consensus 251 eAGAD~IfIeg~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~el------Gv~~Vsyp~~ll~ 315 (497)
++||+.+.++++. +.+.++++++.++ +|+.+| ||- .+.+++.++ |+.-|+.+..++.
T Consensus 157 ~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~-ipvias----GGi---~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 157 SAGCSRYVVTDVTKDGTLTGPNLELLREVCARTD-APVVAS----GGV---SSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred hcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCC-CCEEEe----CCC---CCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 9999999998763 4678889988764 675543 442 366666553 9999988775543
No 142
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.66 E-value=0.38 Score=51.29 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=102.0
Q ss_pred cccCCCCCCC---HHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCC----
Q 010948 125 LALPDTGFIS---YGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT---- 196 (497)
Q Consensus 125 lG~PD~g~lt---ldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~---- 196 (497)
.|++..+.++ +++.+...+++.... +.|||+-+ +|..++....+.++.++++|+++|-|-=. |.|.
T Consensus 70 ~g~~n~~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si-~g~~~~~~~~~~a~~~~~~g~d~ielN~s-----cP~~~~~~ 143 (420)
T PRK08318 70 IGFNNIELITDRPLEVNLREIRRVKRDYPDRALIASI-MVECNEEEWKEIAPLVEETGADGIELNFG-----CPHGMSER 143 (420)
T ss_pred ccccCcccccccCHHHHHHHHHHHHhhCCCceEEEEe-ccCCCHHHHHHHHHHHHhcCCCEEEEeCC-----CCCCcccc
Confidence 3555544433 466666666665444 48888765 34324677889999999999999988543 3331
Q ss_pred -CCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEe---------------
Q 010948 197 -RGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI--------------- 259 (497)
Q Consensus 197 -~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfI--------------- 259 (497)
.|..+. ..+.+.+-+++++++. ..++++-=|-+ +++..+-+++.+++|||+|.+
T Consensus 144 ~~g~~~~~~~~~~~~i~~~v~~~~---~~Pv~vKl~p~------~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~ 214 (420)
T PRK08318 144 GMGSAVGQVPELVEMYTRWVKRGS---RLPVIVKLTPN------ITDIREPARAAKRGGADAVSLINTINSITGVDLDRM 214 (420)
T ss_pred CCcccccCCHHHHHHHHHHHHhcc---CCcEEEEcCCC------cccHHHHHHHHHHCCCCEEEEecccCcccccccccc
Confidence 122222 3333333334333332 23444444422 234566778889999999982
Q ss_pred ------c------cCC-------CHHHHHHHHHhCC--CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHH
Q 010948 260 ------D------ALA-------SKEEMKAFCEISP--LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSV 318 (497)
Q Consensus 260 ------e------g~~-------s~eei~~i~~~v~--~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~ 318 (497)
+ ++. +.+.+.++.+.++ .+|+. ..||-.-.-+..++-..|.+.|-.+..+++--.
T Consensus 215 ~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIi----g~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp 290 (420)
T PRK08318 215 IPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPIS----GIGGIETWRDAAEFILLGAGTVQVCTAAMQYGF 290 (420)
T ss_pred CCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEE----eecCcCCHHHHHHHHHhCCChheeeeeeccCCc
Confidence 1 010 1345555555542 34443 334433223455666678888877777666444
Q ss_pred HHHHHHHHHH
Q 010948 319 RAMQDALTAI 328 (497)
Q Consensus 319 ~Am~~al~~i 328 (497)
..+++....|
T Consensus 291 ~ii~~I~~~L 300 (420)
T PRK08318 291 RIVEDMISGL 300 (420)
T ss_pred hhHHHHHHHH
Confidence 4444444443
No 143
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.64 E-value=0.87 Score=43.13 Aligned_cols=153 Identities=20% Similarity=0.201 Sum_probs=85.3
Q ss_pred HHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 010948 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (497)
Q Consensus 104 iae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~ 183 (497)
.+.++|++.+.+- .+|.....+.+.+..++.+++..++|++++ ..++.+.++|++|||
T Consensus 29 ~~~~~gv~~v~lr----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~a~~~gad~vh 86 (212)
T PRK00043 29 AALEGGVTLVQLR----------EKGLDTRERLELARALKELCRRYGVPLIVN------------DRVDLALAVGADGVH 86 (212)
T ss_pred HHHhcCCCEEEEe----------CCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------ChHHHHHHcCCCEEe
Confidence 3445677776432 333222222233344445555667888884 134677789999999
Q ss_pred ecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC-
Q 010948 184 LEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL- 262 (497)
Q Consensus 184 IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~- 262 (497)
+..... +.. .+.++ + +.+..+-.-+ +.. +.+....+.|||.|++..+
T Consensus 87 ~~~~~~-------------~~~-~~~~~------~---~~~~~~g~~~-----~t~----~e~~~a~~~gaD~v~~~~~~ 134 (212)
T PRK00043 87 LGQDDL-------------PVA-DARAL------L---GPDAIIGLST-----HTL----EEAAAALAAGADYVGVGPIF 134 (212)
T ss_pred cCcccC-------------CHH-HHHHH------c---CCCCEEEEeC-----CCH----HHHHHHhHcCCCEEEECCcc
Confidence 965320 111 11111 1 2233333222 122 3345555789999986321
Q ss_pred -----------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 263 -----------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 263 -----------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
...+.++++++.++.+|.. ..||-++ -+..++.++|+..|..+..++.
T Consensus 135 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~----a~GGI~~-~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 135 PTPTKKDAKAPQGLEGLREIRAAVGDIPIV----AIGGITP-ENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHhcCCCCEE----EECCcCH-HHHHHHHHcCCCEEEEeHHhhc
Confidence 1156788887776534432 3345432 4678889999999999887664
No 144
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.60 E-value=0.72 Score=45.83 Aligned_cols=197 Identities=14% Similarity=0.131 Sum_probs=104.0
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchhh-----hhh----hcccCCCCCC-CHHHHHHHHHHHHhhcCcceEeeCCCCCC
Q 010948 93 GPACFDALSAKLVEKSGFSFCFTSGFSI-----SAA----RLALPDTGFI-SYGEMVDQGQLITQAVSIPVIGDGDNGYG 162 (497)
Q Consensus 93 ~p~ayDalSAriae~aGfdAI~vSG~av-----Sas----~lG~PD~g~l-tldEml~~~r~I~ra~~iPVIaD~DtGYG 162 (497)
|-|.-|+.-++...+. |-+..++|+++ .++ .-|..-...- +++..-...+.+ +..+.|+++-+ +|
T Consensus 7 Mag~td~~f~~~~~~~-~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~-~~~~~p~~vqi---~g 81 (233)
T cd02911 7 MAGITDGDFCRKRADH-AGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKAL-KDSNVLVGVNV---RS 81 (233)
T ss_pred cCCCcCHHHHHhhCcc-CCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHh-hccCCeEEEEe---cC
Confidence 4588888888844332 44556665443 111 1132221101 222222223333 33467888876 34
Q ss_pred -CHHHHHHHHHHHHHhCccEEEecCCC-CCCCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccH
Q 010948 163 -NAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (497)
Q Consensus 163 -~~~~V~rtVk~l~~AGaAGI~IEDq~-~pKrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~l 239 (497)
+++...+.++.+.+ ++++|.|-=.- .+|.|.+..|..|. .++...+-+++++++ ++-|..|+-.. ..
T Consensus 82 ~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~------~~pVsvKir~g--~~- 151 (233)
T cd02911 82 SSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET------GVPVSVKIRAG--VD- 151 (233)
T ss_pred CCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc------CCCEEEEEcCC--cC-
Confidence 57778888888876 56888886553 34445544454444 455555555555432 33444444221 11
Q ss_pred HHHHHHHHHHHhcCCCEEEeccCC-----CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 010948 240 EESLRRSRAFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (497)
Q Consensus 240 deaIeRAkAY~eAGAD~IfIeg~~-----s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~ 311 (497)
++.++-++.++++|+|+|-+.... +.+.++++. ..+|+..| ++-.-.-+..++-+.|...|..+-
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~---~~ipVIgn----GgI~s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS---TELFIIGN----NSVTTIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc---CCCEEEEE----CCcCCHHHHHHHHHcCCCEEEEcC
Confidence 567788899999999988775532 234444443 23565544 332211233455556777776643
No 145
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.55 E-value=0.42 Score=48.82 Aligned_cols=135 Identities=24% Similarity=0.297 Sum_probs=87.5
Q ss_pred HHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEecc--chhcccHHHHHHHHH
Q 010948 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD--SRQALSLEESLRRSR 247 (497)
Q Consensus 170 tVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTD--A~~~~~ldeaIeRAk 247 (497)
+++.+.++|+++|-.-|...--.-||.++. -++.+||+...++++++.. .-+|++--- ++. +.|++++-+.
T Consensus 27 sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~-~vtldem~~h~~aV~rg~~----~~~vv~DmPf~sy~--~~e~a~~na~ 99 (263)
T TIGR00222 27 FAKLFADAGVDVILVGDSLGMVVLGHDSTL-PVTVADMIYHTAAVKRGAP----NCLIVTDLPFMSYA--TPEQALKNAA 99 (263)
T ss_pred HHHHHHHcCCCEEEECccHhHHhcCCCCCC-CcCHHHHHHHHHHHHhhCC----CceEEeCCCcCCCC--CHHHHHHHHH
Confidence 456778899999999887644455776543 4799999999999988753 233332211 122 3688888888
Q ss_pred HHHh-cCCCEEEeccCCCH-HHHHHHHHhCCCCCcc---------ceeeec---CCCCCC-----C-CHHHHHhcCCCEE
Q 010948 248 AFAD-AGADVLFIDALASK-EEMKAFCEISPLVPKM---------ANMLEG---GGKTPI-----L-NPLELEELGFKLV 307 (497)
Q Consensus 248 AY~e-AGAD~IfIeg~~s~-eei~~i~~~v~~vP~~---------~N~l~~---~g~tP~-----l-t~~eL~elGv~~V 307 (497)
.+.+ +||++|-+|+-... +.++.+++. ++|++ ++...+ .|+++. + ....|+++|...+
T Consensus 100 rl~~eaGa~aVkiEgg~~~~~~i~~l~~~--gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~i 177 (263)
T TIGR00222 100 RVMQETGANAVKLEGGEWLVETVQMLTER--GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLL 177 (263)
T ss_pred HHHHHhCCeEEEEcCcHhHHHHHHHHHHC--CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 7666 99999999986332 344444443 35655 443210 122221 0 1467889999998
Q ss_pred eccchH
Q 010948 308 AYPLSL 313 (497)
Q Consensus 308 syp~~l 313 (497)
..+...
T Consensus 178 vlE~vp 183 (263)
T TIGR00222 178 VLECVP 183 (263)
T ss_pred EEcCCc
Confidence 887766
No 146
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.53 E-value=0.44 Score=47.52 Aligned_cols=176 Identities=17% Similarity=0.225 Sum_probs=100.7
Q ss_pred Ch-HHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHH
Q 010948 98 DA-LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (497)
Q Consensus 98 Da-lSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~ 176 (497)
|+ -.|+..++.|++.+++.-..-+ + . .-...++.++.|++.+++||+++. |..+.+. ++++..
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~----~--~----~~~~n~~~i~~i~~~~~~pv~~~G--Gi~s~~d----~~~~~~ 94 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS----S--E----GRTTMIDVVERTAETVFIPLTVGG--GIKSIED----VDKLLR 94 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc----c--c----cChhhHHHHHHHHHhcCCCEEEEC--CCCCHHH----HHHHHH
Confidence 55 3567788899999999854321 1 0 111346677888888899998872 3334333 446667
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch-----------------hcccH
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-----------------QALSL 239 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~-----------------~~~~l 239 (497)
+||.+|.+ +.. .+.++ +++.++... .|.+=++ .-.|.. ....-
T Consensus 95 ~Ga~~viv-gt~-----------~~~~p-~~~~~~~~~------~~~~~iv-~slD~~~g~~~~~~~~~v~i~gw~~~~~ 154 (254)
T TIGR00735 95 AGADKVSI-NTA-----------AVKNP-ELIYELADR------FGSQCIV-VAIDAKRVYVNSYCWYEVYIYGGRESTG 154 (254)
T ss_pred cCCCEEEE-Chh-----------HhhCh-HHHHHHHHH------cCCCCEE-EEEEeccCCCCCCccEEEEEeCCcccCC
Confidence 89999977 221 01122 233343221 1111111 111211 01112
Q ss_pred HHHHHHHHHHHhcCCCEEEeccCCC--------HHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcC-CCEEecc
Q 010948 240 EESLRRSRAFADAGADVLFIDALAS--------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAYP 310 (497)
Q Consensus 240 deaIeRAkAY~eAGAD~IfIeg~~s--------~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elG-v~~Vsyp 310 (497)
.+.++-++.+.++|+|.|.+..+.. .+.++++.+.++ +|+. ..||-...-.+.++.+.| +.-|+.+
T Consensus 155 ~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~-ipvi----a~GGi~s~~di~~~~~~g~~dgv~~g 229 (254)
T TIGR00735 155 LDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVK-IPVI----ASGGAGKPEHFYEAFTKGKADAALAA 229 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCC-CCEE----EeCCCCCHHHHHHHHHcCCcceeeEh
Confidence 4567888899999999999866533 467788888764 5654 333432212445666667 8888776
Q ss_pred chHH
Q 010948 311 LSLI 314 (497)
Q Consensus 311 ~~ll 314 (497)
..++
T Consensus 230 ~a~~ 233 (254)
T TIGR00735 230 SVFH 233 (254)
T ss_pred HHHh
Confidence 6544
No 147
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=95.52 E-value=0.1 Score=53.19 Aligned_cols=106 Identities=23% Similarity=0.249 Sum_probs=69.1
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh-cccHHHHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-ALSLEESLRRSR 247 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~-~~~ldeaIeRAk 247 (497)
-+++.+.++|++.|.+-|...--..||.. ..=++.|+|+.-.+|.+++. ++-+|++----.. ..+.+++++-|.
T Consensus 27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~s-T~~vtld~mi~h~~aV~Rga----~~~~vv~DmPf~sy~~s~e~av~nA~ 101 (261)
T PF02548_consen 27 PSARIADEAGVDIILVGDSLGMVVLGYDS-TLPVTLDEMIYHTKAVRRGA----PNAFVVADMPFGSYQASPEQAVRNAG 101 (261)
T ss_dssp HHHHHHHHTT-SEEEE-TTHHHHTT--SS-STT--HHHHHHHHHHHHHH-----TSSEEEEE--TTSSTSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCcHHHheeCCCC-CcCcCHHHHHHHHHHHHhcC----CCceEEecCCcccccCCHHHHHHHHH
Confidence 45567788999999999986433456644 23468899999999988876 3456665432211 147899999999
Q ss_pred HHHh-cCCCEEEeccCC-CHHHHHHHHHhCCCCCcc
Q 010948 248 AFAD-AGADVLFIDALA-SKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 248 AY~e-AGAD~IfIeg~~-s~eei~~i~~~v~~vP~~ 281 (497)
++.+ +|||+|-+||-. ..+.++.++++ ++|++
T Consensus 102 rl~ke~GadaVKlEGg~~~~~~i~~l~~~--GIPV~ 135 (261)
T PF02548_consen 102 RLMKEAGADAVKLEGGAEIAETIKALVDA--GIPVM 135 (261)
T ss_dssp HHHHTTT-SEEEEEBSGGGHHHHHHHHHT--T--EE
T ss_pred HHHHhcCCCEEEeccchhHHHHHHHHHHC--CCcEE
Confidence 9987 999999999864 56788888875 34543
No 148
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=95.50 E-value=0.7 Score=50.74 Aligned_cols=245 Identities=18% Similarity=0.161 Sum_probs=130.5
Q ss_pred HHHHHHHHhCCcEEEecchhhhh--hhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe--eCCC--CCCC-HHHHH-HHH
Q 010948 100 LSAKLVEKSGFSFCFTSGFSISA--ARLALPDTGFISYGEMVDQGQLITQAVSIPVIG--DGDN--GYGN-AMNVK-RTV 171 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG~avSa--s~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa--D~Dt--GYG~-~~~V~-rtV 171 (497)
.-|..+.++|++.|=++|.+.-. .++-.|| -.|.+..++... -+.++.+ =..+ ||-. +.+|. ..+
T Consensus 29 ~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~-----p~e~l~~l~~~~--~~~~l~~l~r~~N~~G~~~~~dDvv~~fv 101 (467)
T PRK14041 29 PALEAFDRMGFYSMEVWGGATFDVCVRFLNEN-----PWERLKEIRKRL--KNTKIQMLLRGQNLVGYRHYADDVVELFV 101 (467)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhhcccCCC-----HHHHHHHHHHhC--CCCEEEEEeccccccCcccccchhhHHHH
Confidence 34567778899999775322111 1122334 234444443322 2344433 5555 5643 45544 448
Q ss_pred HHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEe---ccchhcccHHHHHHHHHH
Q 010948 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR---TDSRQALSLEESLRRSRA 248 (497)
Q Consensus 172 k~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiAR---TDA~~~~~ldeaIeRAkA 248 (497)
++..++|++.|+|-|..+ + ++.++.+++..++.|. .+.+- |.. ....++..++.++.
T Consensus 102 ~~A~~~Gvd~irif~~ln----------------d-~~n~~~~i~~ak~~G~--~v~~~i~~t~~-p~~t~e~~~~~a~~ 161 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALN----------------D-IRNLEKSIEVAKKHGA--HVQGAISYTVS-PVHTLEYYLEFARE 161 (467)
T ss_pred HHHHHCCcCEEEEEEeCC----------------H-HHHHHHHHHHHHHCCC--EEEEEEEeccC-CCCCHHHHHHHHHH
Confidence 888999999999988652 1 2344444444444442 22211 222 23567888999999
Q ss_pred HHhcCCCEEEec---cCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCC---CHHHHHhcCCCEEeccch--HHHHHHH
Q 010948 249 FADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPIL---NPLELEELGFKLVAYPLS--LIGVSVR 319 (497)
Q Consensus 249 Y~eAGAD~IfIe---g~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~l---t~~eL~elGv~~Vsyp~~--ll~aa~~ 319 (497)
+.++|||.|.+- |+-++.++.++++.+.. +++++.+ .. --+..+ +.-.--+.|+++|--... .-++..-
T Consensus 162 l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~-H~-Hnt~GlA~AN~laAieaGad~vD~sv~~~g~gagN~ 239 (467)
T PRK14041 162 LVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEV-HS-HCTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQP 239 (467)
T ss_pred HHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEE-Ee-cCCCCcHHHHHHHHHHhCCCEEEeeccccCCCCCCh
Confidence 999999999985 45667777777654321 2233332 11 112223 234445789998765443 2345566
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccH-HHHHHhhcccccccccccccCCCCCCC
Q 010948 320 AMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTY-YEEEKRYATSMRRLSSENVTSNSYDTQ 381 (497)
Q Consensus 320 Am~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~-~~~e~ry~~~~~~~~~~~~~~~~~~~~ 381 (497)
++++.+..|+..+.. ....++.+. .+.+| .+..++|..-+... ......+|..|
T Consensus 240 atE~lv~~L~~~g~~---tgiDl~~L~---~~~~~~~~vr~~y~~~~~~~--~~~~~~v~~~q 294 (467)
T PRK14041 240 PFESMYYAFRENGKE---TDFDRKALK---FLVEYFTKVREKYSEYDVGM--KSPDSRILVSQ 294 (467)
T ss_pred hHHHHHHHHHhcCCC---CCcCHHHHH---HHHHHHHHHHHHHhhcCCCC--CCCCcCeeeCC
Confidence 667766667643221 123344443 33444 44455664433222 23344455544
No 149
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.50 E-value=0.76 Score=44.45 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=98.1
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCH--HHHHHH
Q 010948 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA--MNVKRT 170 (497)
Q Consensus 93 ~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~--~~V~rt 170 (497)
|.|.-|.-.++.+.++|. .+ +=....++.+++...++.+.+....|+.+= . +.+. ....+.
T Consensus 10 m~g~~~~~~~~~~~~~G~-------ig-------~i~~~~~~~~~~~~~~~~i~~~~~~~~~v~--~-i~~~~~~~~~~~ 72 (236)
T cd04730 10 MAGVSTPELAAAVSNAGG-------LG-------FIGAGYLTPEALRAEIRKIRALTDKPFGVN--L-LVPSSNPDFEAL 72 (236)
T ss_pred CCCCCCHHHHHHHHhCCC-------cc-------ccCCCCCCHHHHHHHHHHHHHhcCCCeEEe--E-ecCCCCcCHHHH
Confidence 446678888888888762 11 113345678888888887765443333210 0 1111 134566
Q ss_pred HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH
Q 010948 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (497)
Q Consensus 171 Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~ 250 (497)
++.+.++|+++|++-+.. + .+++++++ + .+ ..++.-... .++++.+.
T Consensus 73 ~~~~~~~g~d~v~l~~~~--------------~-~~~~~~~~---~----~~--i~~i~~v~~---------~~~~~~~~ 119 (236)
T cd04730 73 LEVALEEGVPVVSFSFGP--------------P-AEVVERLK---A----AG--IKVIPTVTS---------VEEARKAE 119 (236)
T ss_pred HHHHHhCCCCEEEEcCCC--------------C-HHHHHHHH---H----cC--CEEEEeCCC---------HHHHHHHH
Confidence 677888999999995431 1 23333322 1 12 223322211 25667788
Q ss_pred hcCCCEEEeccC-----------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 010948 251 DAGADVLFIDAL-----------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (497)
Q Consensus 251 eAGAD~IfIeg~-----------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa 317 (497)
++|||.|.+.+. ...+.++++.+.++ +|.+ ..+|-++.-+..++.++|..-|..+..++...
T Consensus 120 ~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~-~Pvi----~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 120 AAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD-IPVI----AAGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred HcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC-CCEE----EECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 899999987542 12346667766554 4544 23353332356777789999999988766543
No 150
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.50 E-value=0.53 Score=47.71 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=53.0
Q ss_pred HHHHHHhC--CcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhC
Q 010948 102 AKLVEKSG--FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (497)
Q Consensus 102 Ariae~aG--fdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG 178 (497)
|+.+++++ ++++=+- |.-. .-|+-+.-.-+.+.+.+.++.|.+.+++||++-+.. +..++.+.++.++++|
T Consensus 109 a~~~~~~~~~~d~ielN~~cP~---~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~---~~~~~~~~a~~l~~~G 182 (300)
T TIGR01037 109 AEKLEKAPPYVDAYELNLSCPH---VKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP---NVTDITEIAKAAEEAG 182 (300)
T ss_pred HHHHHhccCccCEEEEECCCCC---CCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC---ChhhHHHHHHHHHHcC
Confidence 55666553 7777765 2221 123323223455677778888888889999999863 3345677888899999
Q ss_pred ccEEEecC
Q 010948 179 FAGIILED 186 (497)
Q Consensus 179 aAGI~IED 186 (497)
+++|++-.
T Consensus 183 ~d~i~v~n 190 (300)
T TIGR01037 183 ADGLTLIN 190 (300)
T ss_pred CCEEEEEc
Confidence 99999853
No 151
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.46 E-value=0.28 Score=52.31 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=89.3
Q ss_pred HHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCc
Q 010948 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (497)
Q Consensus 101 SAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGa 179 (497)
.|+.++++|+|++=+- |.-......|.-....-..+.+.+.++.+.+.+++||+|=+--.+. ++...++.++++||
T Consensus 118 ~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~---~~~~~a~~~~~~Ga 194 (420)
T PRK08318 118 IAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNIT---DIREPARAAKRGGA 194 (420)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcc---cHHHHHHHHHHCCC
Confidence 4567778898888765 3221000001101111344566677777777788999998864333 46677788899999
Q ss_pred cEEEecCCCC-------------C----C-CCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 180 AGIILEDQVS-------------P----K-GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 180 AGI~IEDq~~-------------p----K-rCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
+||.+-.... | + ..|...|+.+-|.. .+.|+.+.++.. ..++-|+|-.+-.. -
T Consensus 195 dgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~--l~~v~~~~~~~~--~~~ipIig~GGI~s---~-- 265 (420)
T PRK08318 195 DAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIA--LNMVAEIARDPE--TRGLPISGIGGIET---W-- 265 (420)
T ss_pred CEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHH--HHHHHHHHhccc--cCCCCEEeecCcCC---H--
Confidence 9999533321 1 0 12333455554442 344444433321 12677888666543 2
Q ss_pred HHHHHHHHHhcCCCEEEecc--C-CCHHHHHHHHHh
Q 010948 242 SLRRSRAFADAGADVLFIDA--L-ASKEEMKAFCEI 274 (497)
Q Consensus 242 aIeRAkAY~eAGAD~IfIeg--~-~s~eei~~i~~~ 274 (497)
+.+..|..||||+|.+=. + ...+.+.++.+.
T Consensus 266 --~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~ 299 (420)
T PRK08318 266 --RDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISG 299 (420)
T ss_pred --HHHHHHHHhCCChheeeeeeccCCchhHHHHHHH
Confidence 345555679999987632 1 133455555544
No 152
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=95.44 E-value=0.33 Score=47.84 Aligned_cols=142 Identities=20% Similarity=0.158 Sum_probs=85.5
Q ss_pred CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 010948 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (497)
Q Consensus 150 ~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA 229 (497)
.+-.++++|.|+.....-..-+++.++.||+.|-+==.. |+.... ..+...+-|++++++.. |..+.+|-
T Consensus 55 ~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~-----g~l~~g---~~~~v~~ei~~i~~~~~--g~~lKvIl 124 (211)
T TIGR00126 55 RICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINI-----GALKDG---NEEVVYDDIRAVVEACA--GVLLKVII 124 (211)
T ss_pred eEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecch-----HhhhCC---cHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 345668999998776554455578888999998653322 221111 12566777788887764 44566654
Q ss_pred eccchhcccHHHHHHHHHHHHhcCCCEE-----EeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCC
Q 010948 230 RTDSRQALSLEESLRRSRAFADAGADVL-----FIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGF 304 (497)
Q Consensus 230 RTDA~~~~~ldeaIeRAkAY~eAGAD~I-----fIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv 304 (497)
-|..+.. ++.+.-++...++|||.| |..+-.+.++++.+.+.++. +.. +...||--..-...++-++|.
T Consensus 125 E~~~L~~---~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~-~v~--IKaaGGirt~~~a~~~i~aGa 198 (211)
T TIGR00126 125 ETGLLTD---EEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD-TIG--VKASGGVRTAEDAIAMIEAGA 198 (211)
T ss_pred ecCCCCH---HHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc-CCe--EEEeCCCCCHHHHHHHHHHhh
Confidence 4443321 566667888899999999 54445677888888777653 222 333333211123355556666
Q ss_pred CEE
Q 010948 305 KLV 307 (497)
Q Consensus 305 ~~V 307 (497)
.|+
T Consensus 199 ~ri 201 (211)
T TIGR00126 199 SRI 201 (211)
T ss_pred HHh
Confidence 655
No 153
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=95.42 E-value=0.92 Score=46.14 Aligned_cols=176 Identities=16% Similarity=0.234 Sum_probs=106.5
Q ss_pred HHHHHHhCCcEEEec-chhhhhhhcccCCC------------CCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHH---
Q 010948 102 AKLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM--- 165 (497)
Q Consensus 102 Ariae~aGfdAI~vS-G~avSas~lG~PD~------------g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~--- 165 (497)
++.++++|+|.+=++ -++ -.+.|+ ..+++++.++.++.+++..++|++. .+|-|+.
T Consensus 35 ~~~l~~~Gad~iElGiPfS-----DP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vl---m~Y~N~i~~~ 106 (263)
T CHL00200 35 LKILDKKGADIIELGIPYS-----DPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVI---FTYYNPVLHY 106 (263)
T ss_pred HHHHHHCCCCEEEECCCCC-----CCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE---EecccHHHHh
Confidence 345667899999877 221 122232 2478889999999998777899763 6788872
Q ss_pred HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHH
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeR 245 (497)
.+.+-++.+.++|++||.|=|- |.||.-+-+.++++. |.+++...--..- .+|
T Consensus 107 G~e~F~~~~~~aGvdgviipDL---------------P~ee~~~~~~~~~~~----gi~~I~lv~PtT~--------~er 159 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDL---------------PYEESDYLISVCNLY----NIELILLIAPTSS--------KSR 159 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCC---------------CHHHHHHHHHHHHHc----CCCEEEEECCCCC--------HHH
Confidence 4667789999999999999883 345544333333333 4454443332221 367
Q ss_pred HHHHHhcCCCEEEe---ccCCC-----HHHHHHHHHh---CCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 010948 246 SRAFADAGADVLFI---DALAS-----KEEMKAFCEI---SPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (497)
Q Consensus 246 AkAY~eAGAD~IfI---eg~~s-----~eei~~i~~~---v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll 314 (497)
.+.+.+..-..|++ .|++- .++++++.+. .-..|.. +.+ |-...-+.+++.+.|..-|+.|+.+.
T Consensus 160 i~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~---vGF-GI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 160 IQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPII---LGF-GISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEE---EEC-CcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 77777776546665 33321 1334444432 2224543 233 32211245778889999999999886
Q ss_pred HH
Q 010948 315 GV 316 (497)
Q Consensus 315 ~a 316 (497)
+.
T Consensus 236 ~~ 237 (263)
T CHL00200 236 QI 237 (263)
T ss_pred HH
Confidence 53
No 154
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.41 E-value=0.72 Score=51.99 Aligned_cols=267 Identities=17% Similarity=0.170 Sum_probs=140.9
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-CcceEee--C
Q 010948 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGD--G 157 (497)
Q Consensus 81 Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPVIaD--~ 157 (497)
||+-+|+.....++...-..-|..+.++|++.+=++|.+...+.+.+-. ++-.+.++.+++.. +.++.+= .
T Consensus 11 lRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~------edp~e~l~~l~~~~~~~~l~~l~Rg 84 (592)
T PRK09282 11 LRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLN------EDPWERLRKLKKALPNTPLQMLLRG 84 (592)
T ss_pred CCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCC------ccHHHHHHHHHHhCCCCEEEEEecc
Confidence 5555554333334444444556778889999998874322111122211 12344455555543 4555443 4
Q ss_pred CC--CCCC-HHH-HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEE---Ee
Q 010948 158 DN--GYGN-AMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---AR 230 (497)
Q Consensus 158 Dt--GYG~-~~~-V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi---AR 230 (497)
.+ ||.+ +.+ +...+++..++|++-++|-|... +. ..++.+++..++.| +.+. .=
T Consensus 85 ~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~ln-------------d~----~n~~~~i~~ak~~G--~~v~~~i~~ 145 (592)
T PRK09282 85 QNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALN-------------DV----RNMEVAIKAAKKAG--AHVQGTISY 145 (592)
T ss_pred ccccccccccchhhHHHHHHHHHCCCCEEEEEEecC-------------hH----HHHHHHHHHHHHcC--CEEEEEEEe
Confidence 33 6665 444 45668888999999999998652 11 23333334333334 2232 12
Q ss_pred ccchhcccHHHHHHHHHHHHhcCCCEEEec---cCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCC---CHHHHHhcC
Q 010948 231 TDSRQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPIL---NPLELEELG 303 (497)
Q Consensus 231 TDA~~~~~ldeaIeRAkAY~eAGAD~IfIe---g~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~l---t~~eL~elG 303 (497)
|++ ..+.++..++-++.+.++|||.|.+- |.-.++++.++++.+.. ++.++.+=.. -+..+ +.-.--+.|
T Consensus 146 t~~-p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~H--nt~Gla~An~laAv~aG 222 (592)
T PRK09282 146 TTS-PVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSH--CTSGLAPMTYLKAVEAG 222 (592)
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEc--CCCCcHHHHHHHHHHhC
Confidence 222 23568889999999999999999985 45567777777765321 2233332111 12223 234455779
Q ss_pred CCEEeccchH--HHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccccccccccccCCCCCCC
Q 010948 304 FKLVAYPLSL--IGVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVTSNSYDTQ 381 (497)
Q Consensus 304 v~~Vsyp~~l--l~aa~~Am~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~~~~~~~~~~~~~~~~~~~ 381 (497)
++.|=-.... -++..-+++..+..|...+.. .-..++.+.++-.+ +.+..++|..-+... ...+..+|.+|
T Consensus 223 ad~vD~ai~g~g~~agn~~~e~vv~~L~~~g~~---~~idl~~l~~~s~~--~~~~~~~y~~~~~~~--~~~~~~v~~~~ 295 (592)
T PRK09282 223 VDIIDTAISPLAFGTSQPPTESMVAALKGTPYD---TGLDLELLFEIAEY--FREVRKKYKQFESEF--TIVDTRVLIHQ 295 (592)
T ss_pred CCEEEeeccccCCCcCCHhHHHHHHHHHhCCCC---CccCHHHHHHHHHH--HHHHHHHhhcCCCcc--ccCCccEEEEc
Confidence 8887553332 244455556666656543222 12234444433322 555566675533221 23344455444
Q ss_pred C
Q 010948 382 P 382 (497)
Q Consensus 382 ~ 382 (497)
-
T Consensus 296 ~ 296 (592)
T PRK09282 296 V 296 (592)
T ss_pred C
Confidence 3
No 155
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=95.38 E-value=0.27 Score=48.32 Aligned_cols=146 Identities=18% Similarity=0.194 Sum_probs=83.9
Q ss_pred HHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHH-----HHHHHHHHHhC
Q 010948 105 VEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNV-----KRTVKGYIKAG 178 (497)
Q Consensus 105 ae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V-----~rtVk~l~~AG 178 (497)
+-+.||+++++. ++.-.+ ..-+... ...+++++++|.|......- ...+++.++.|
T Consensus 28 a~~~~~~av~v~p~~~~~~-~~~~~~~-----------------~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~G 89 (236)
T PF01791_consen 28 AIEYGFDAVCVTPGYVKPA-AELLAGS-----------------GVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLG 89 (236)
T ss_dssp HHHHTSSEEEEEGGGHHHH-HHHSTTS-----------------TSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT
T ss_pred HHHhCCCEEEECHHHHHHH-HHHhhcc-----------------ccccceEEEeCCCCCccccccccchHHHHHHHHHcC
Confidence 345599999988 443321 1112111 12588999999997765555 67889999999
Q ss_pred ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh---cccHHHHHHHHHHHHhcCCC
Q 010948 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ---ALSLEESLRRSRAFADAGAD 255 (497)
Q Consensus 179 aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~---~~~ldeaIeRAkAY~eAGAD 255 (497)
|++|.+==.. ++.... ..+++.+.|+++++..+..+..+++-.-..... ....+....-++...++|||
T Consensus 90 Ad~vd~vi~~-----~~~~~~---~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD 161 (236)
T PF01791_consen 90 ADEVDVVINY-----GALGSG---NEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGAD 161 (236)
T ss_dssp -SEEEEEEEH-----HHHHTT---HHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-S
T ss_pred Cceeeeeccc-----cccccc---cHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCC
Confidence 9999773321 111100 135677888888888775443344432221111 01122345556777899999
Q ss_pred EEEeccC-------CCHHHHHHHHHhCC
Q 010948 256 VLFIDAL-------ASKEEMKAFCEISP 276 (497)
Q Consensus 256 ~IfIeg~-------~s~eei~~i~~~v~ 276 (497)
.|=..-. .+.+.++++++..+
T Consensus 162 ~vKt~tg~~~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 162 FVKTSTGKPVGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp EEEEE-SSSSCSHHHHHHHHHHHHHTHS
T ss_pred EEEecCCccccccHHHHHHHHHHHHhcC
Confidence 9988655 34455666666443
No 156
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.33 E-value=0.48 Score=49.18 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhCccEEEecCCC--------CC---CCCCCCCCccccCH-HHHHHHHHHHHHHHHhcCCCeEEEEeccc
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSR-EEAVMRIKAAVDARKESGSDIVIVARTDS 233 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~--------~p---KrCGH~~gk~lvp~-ee~~~KIrAAv~Ar~~~g~dfvIiARTDA 233 (497)
...+++++..++|.+||.|--.- +| ||-..-+| .+... .-.++.|++++++ .|++|.|..|.-.
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGG-slenR~rf~~EiI~aIR~a---vG~d~~v~vris~ 225 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG-SLENRARLLLEIYDAIRAA---VGPGFPVGIKLNS 225 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCC-CHHHHHHHHHHHHHHHHHH---cCCCCeEEEEEcH
Confidence 44566788889999999986542 22 33222233 23222 3344555555555 3678888888643
Q ss_pred h----hcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 234 R----QALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 234 ~----~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
. .....+|+++-++.++++|+|.|=+.
T Consensus 226 ~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 226 ADFQRGGFTEEDALEVVEALEEAGVDLVELS 256 (338)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 2 23467999999999999999998753
No 157
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.31 E-value=0.082 Score=53.53 Aligned_cols=137 Identities=26% Similarity=0.285 Sum_probs=86.2
Q ss_pred HHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEecc-chhcccHHHHHHHHHH
Q 010948 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD-SRQALSLEESLRRSRA 248 (497)
Q Consensus 170 tVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTD-A~~~~~ldeaIeRAkA 248 (497)
.++.++++|+++|-.-|...--..||.+. ..++.+||+..+++++++.. ..| |++=.. .....+.+++++++.+
T Consensus 24 sA~l~e~aG~d~i~vGds~~~~~lG~pDt-~~vtl~em~~~~~~V~r~~~---~p~-viaD~~fg~y~~~~~~av~~a~r 98 (254)
T cd06557 24 TAKLADEAGVDVILVGDSLGMVVLGYDST-LPVTLDEMIYHTRAVRRGAP---RAL-VVADMPFGSYQTSPEQALRNAAR 98 (254)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHcCCCCC-CCcCHHHHHHHHHHHHhcCC---CCe-EEEeCCCCcccCCHHHHHHHHHH
Confidence 34677889999998766643334677554 47899999999999887753 344 445442 1123468999999776
Q ss_pred HHh-cCCCEEEeccCC-CHHHHHHHHHhCCCCCcc---------ceeeec---CCCCCC------CCHHHHHhcCCCEEe
Q 010948 249 FAD-AGADVLFIDALA-SKEEMKAFCEISPLVPKM---------ANMLEG---GGKTPI------LNPLELEELGFKLVA 308 (497)
Q Consensus 249 Y~e-AGAD~IfIeg~~-s~eei~~i~~~v~~vP~~---------~N~l~~---~g~tP~------lt~~eL~elGv~~Vs 308 (497)
..+ +||++|.+|+-. ..+-++.++++ ++|++ .|.+.+ .+++.. -....|+++|...+.
T Consensus 99 ~~~~aGa~aVkiEd~~~~~~~I~al~~a--gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~ 176 (254)
T cd06557 99 LMKEAGADAVKLEGGAEVAETIRALVDA--GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALV 176 (254)
T ss_pred HHHHhCCeEEEEcCcHHHHHHHHHHHHc--CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEE
Confidence 666 999999999852 23445555543 23332 333311 122221 123567888999888
Q ss_pred ccchH
Q 010948 309 YPLSL 313 (497)
Q Consensus 309 yp~~l 313 (497)
.+...
T Consensus 177 lE~v~ 181 (254)
T cd06557 177 LECVP 181 (254)
T ss_pred EcCCC
Confidence 86653
No 158
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.23 E-value=2.9 Score=41.15 Aligned_cols=179 Identities=21% Similarity=0.227 Sum_probs=97.8
Q ss_pred cccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC-----CCCCCCH--HH
Q 010948 94 PACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG-----DNGYGNA--MN 166 (497)
Q Consensus 94 p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~-----DtGYG~~--~~ 166 (497)
.++.+.-+|+.+++.|++-|=+-+ .++ .+|+.|--.++..++. ..++||.+=+ |+=|.+. ..
T Consensus 5 vcv~s~~~a~~A~~~GAdRiELc~-~l~-------~GGlTPS~g~i~~~~~---~~~ipv~vMIRpr~gdF~Ys~~E~~~ 73 (201)
T PF03932_consen 5 VCVESLEDALAAEAGGADRIELCS-NLE-------VGGLTPSLGLIRQARE---AVDIPVHVMIRPRGGDFVYSDEEIEI 73 (201)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEEB-TGG-------GT-B---HHHHHHHHH---HTTSEEEEE--SSSS-S---HHHHHH
T ss_pred EEeCCHHHHHHHHHcCCCEEEECC-Ccc-------CCCcCcCHHHHHHHHh---hcCCceEEEECCCCCCccCCHHHHHH
Confidence 368899999999999999987654 111 1233333344444333 6678866532 3335543 35
Q ss_pred HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch-hcccHHHHHHH
Q 010948 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRR 245 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~-~~~~ldeaIeR 245 (497)
..+.++.+.++|++|+.+== . ..+|. ++.+ .+++ .+++.. +-+ +..=| |+ ...+.+++++.
T Consensus 74 M~~dI~~~~~~GadG~VfG~-L--~~dg~------iD~~-~~~~---Li~~a~--~~~-~tFHR--AfD~~~d~~~al~~ 135 (201)
T PF03932_consen 74 MKEDIRMLRELGADGFVFGA-L--TEDGE------IDEE-ALEE---LIEAAG--GMP-VTFHR--AFDEVPDPEEALEQ 135 (201)
T ss_dssp HHHHHHHHHHTT-SEEEE---B--ETTSS------B-HH-HHHH---HHHHHT--TSE-EEE-G--GGGGSSTHHHHHHH
T ss_pred HHHHHHHHHHcCCCeeEEEe-E--CCCCC------cCHH-HHHH---HHHhcC--CCe-EEEeC--cHHHhCCHHHHHHH
Confidence 66789999999999998721 1 11232 3332 3333 344432 112 23333 22 23457778776
Q ss_pred HHHHHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHh-cCCCEEe
Q 010948 246 SRAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEE-LGFKLVA 308 (497)
Q Consensus 246 AkAY~eAGAD~IfIeg~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~e-lGv~~Vs 308 (497)
.. +.|.+-|+-.|- ...+.++++++...+ -+.++.++|-++ -+..+|.+ .|++-+-
T Consensus 136 L~---~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~---~i~Im~GgGv~~-~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 136 LI---ELGFDRVLTSGGAPTALEGIENLKELVEQAKG---RIEIMPGGGVRA-ENVPELVEETGVREIH 197 (201)
T ss_dssp HH---HHT-SEEEESTTSSSTTTCHHHHHHHHHHHTT---SSEEEEESS--T-TTHHHHHHHHT-SEEE
T ss_pred HH---hcCCCEEECCCCCCCHHHHHHHHHHHHHHcCC---CcEEEecCCCCH-HHHHHHHHhhCCeEEe
Confidence 55 459999997653 456788888876532 256788766544 46777766 8887653
No 159
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=95.20 E-value=1.5 Score=49.71 Aligned_cols=206 Identities=18% Similarity=0.119 Sum_probs=120.9
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCC--CCCC-HHHHH-HHHHHHHH
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMNVK-RTVKGYIK 176 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~Dt--GYG~-~~~V~-rtVk~l~~ 176 (497)
-|..++++||..+=+.|.+.--+.+++-. -+--|++..++.....+.+-.+.=.-+ ||++ +.+|. ..+++..+
T Consensus 31 ia~~~d~~g~~siE~~gGatfd~~~rfl~---edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~ 107 (596)
T PRK14042 31 ICNKMDDVGFWAMEVWGGATFDACLRFLK---EDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVN 107 (596)
T ss_pred HHHHHHhcCCCEEEeeCCcccceeecccC---CCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHH
Confidence 45667789999998884332112344432 234566666666554443334444444 6876 55555 56899999
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE--eccchhcccHHHHHHHHHHHHhcCC
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA--RTDSRQALSLEESLRRSRAFADAGA 254 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA--RTDA~~~~~ldeaIeRAkAY~eAGA 254 (497)
.|++=+-|=|.. . +.+.+..-|++++++ |. .+..+ =|.+ ..+.++.-++-++.+.++||
T Consensus 108 ~Gidv~Rifd~l-----n--------d~~n~~~~i~~~k~~----G~-~~~~~i~yt~s-p~~t~e~~~~~ak~l~~~Ga 168 (596)
T PRK14042 108 NGVDVFRVFDAL-----N--------DARNLKVAIDAIKSH----KK-HAQGAICYTTS-PVHTLDNFLELGKKLAEMGC 168 (596)
T ss_pred cCCCEEEEcccC-----c--------chHHHHHHHHHHHHc----CC-EEEEEEEecCC-CCCCHHHHHHHHHHHHHcCC
Confidence 999999998853 2 233343344444433 42 22222 2333 24678889999999999999
Q ss_pred CEEEec---cCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHHHH
Q 010948 255 DVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQDAL 325 (497)
Q Consensus 255 D~IfIe---g~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~lt---~~eL~elGv~~Vsyp~~ll--~aa~~Am~~al 325 (497)
|.|.|- |+-+++++.++++.+.. +++++.+=. --+..+. .-.-.++|+++|=.....+ ++..-+++..+
T Consensus 169 d~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~--Hnt~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv 246 (596)
T PRK14042 169 DSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHS--HSTSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALV 246 (596)
T ss_pred CEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEe--CCCCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHH
Confidence 999985 45667777777655421 233343321 1233333 3445678999886644433 33555666666
Q ss_pred HHHHc
Q 010948 326 TAIKG 330 (497)
Q Consensus 326 ~~i~~ 330 (497)
..|..
T Consensus 247 ~~L~~ 251 (596)
T PRK14042 247 AALTD 251 (596)
T ss_pred HHHHh
Confidence 66654
No 160
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.16 E-value=1.6 Score=44.36 Aligned_cols=197 Identities=20% Similarity=0.188 Sum_probs=116.6
Q ss_pred HHHHHHhCCCc----eeecccCChHH----HHHHHHhCCcEEEec-chhhhhhhcccCCC------------CCCCHHHH
Q 010948 80 SLRQILELPGV----HQGPACFDALS----AKLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYGEM 138 (497)
Q Consensus 80 ~Lr~ll~~~~~----iv~p~ayDalS----Ariae~aGfdAI~vS-G~avSas~lG~PD~------------g~ltldEm 138 (497)
.|+++.+++++ +++.|--|.-+ ++.+++.|+|.|=++ -++ -.+.|+ ..+++++.
T Consensus 2 ~~~~~~~~~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfS-----DP~aDGpvIq~a~~~AL~~G~~~~~~ 76 (258)
T PRK13111 2 LFAALKAEGRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFS-----DPVADGPVIQAASLRALAAGVTLADV 76 (258)
T ss_pred hhHHHHhcCCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC-----CCcccCHHHHHHHHHHHHcCCCHHHH
Confidence 35555555543 22334334432 344567899998877 221 122232 24688899
Q ss_pred HHHHHHHH-hhcCcceEeeCCCCCCCHH---HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHH
Q 010948 139 VDQGQLIT-QAVSIPVIGDGDNGYGNAM---NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (497)
Q Consensus 139 l~~~r~I~-ra~~iPVIaD~DtGYG~~~---~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAA 214 (497)
++.++.++ +..++|+++ .+|.|+. .+.+.++++.++|++|+.|-|= |.||..+-+.++
T Consensus 77 ~~~~~~~r~~~~~~p~vl---m~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL---------------p~ee~~~~~~~~ 138 (258)
T PRK13111 77 FELVREIREKDPTIPIVL---MTYYNPIFQYGVERFAADAAEAGVDGLIIPDL---------------PPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHhcCCCCCEEE---EecccHHhhcCHHHHHHHHHHcCCcEEEECCC---------------CHHHHHHHHHHH
Confidence 99999998 556799875 4687862 4667789999999999999762 445443333333
Q ss_pred HHHHHhcCCCeEE-EEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC-----------CCH-HHHHHHHHhCCCCCcc
Q 010948 215 VDARKESGSDIVI-VARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASK-EEMKAFCEISPLVPKM 281 (497)
Q Consensus 215 v~Ar~~~g~dfvI-iARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~-----------~s~-eei~~i~~~v~~vP~~ 281 (497)
++.|.+.+. ++=|.. -+|.+.+.+..-+.|++.+. ... +.++++.+.. .+|++
T Consensus 139 ----~~~gl~~I~lvap~t~---------~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~ 204 (258)
T PRK13111 139 ----KKHGLDLIFLVAPTTT---------DERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVA 204 (258)
T ss_pred ----HHcCCcEEEEeCCCCC---------HHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEE
Confidence 334555554 444332 26788888888888876321 112 3444444433 35654
Q ss_pred ceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHH
Q 010948 282 ANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSV 318 (497)
Q Consensus 282 ~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~ 318 (497)
+.+|-++| -+..++.++ +.-|+.|+.+.+..-
T Consensus 205 ---vGfGI~~~-e~v~~~~~~-ADGviVGSaiv~~~~ 236 (258)
T PRK13111 205 ---VGFGISTP-EQAAAIAAV-ADGVIVGSALVKIIE 236 (258)
T ss_pred ---EEcccCCH-HHHHHHHHh-CCEEEEcHHHHHHHH
Confidence 33322222 245666665 899999998776543
No 161
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.13 E-value=2.3 Score=47.13 Aligned_cols=255 Identities=15% Similarity=0.157 Sum_probs=138.1
Q ss_pred HHHHHHhCCCceeecccCChH-HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCC
Q 010948 80 SLRQILELPGVHQGPACFDAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (497)
Q Consensus 80 ~Lr~ll~~~~~iv~p~ayDal-SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~D 158 (497)
+||.-+++.....+ ...|.+ -|..++++||..|=+.|.+.--+++.+-.. +--|.+..++.....+.+-...=+-
T Consensus 11 TLRDG~QSl~atr~-~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E---dpwerlr~lr~~~~nt~lqmL~Rg~ 86 (499)
T PRK12330 11 ALRDAHQSLMATRM-AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE---DPWERLRTFRKLMPNSRLQMLLRGQ 86 (499)
T ss_pred CccchhhcccCccC-CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC---CHHHHHHHHHHhCCCCeEEEEEccc
Confidence 46666665332222 333333 356778899999988754422222333221 2234444444443333333445444
Q ss_pred C--CCCC-HHH-HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCe-EEEEeccc
Q 010948 159 N--GYGN-AMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVARTDS 233 (497)
Q Consensus 159 t--GYG~-~~~-V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~df-vIiARTDA 233 (497)
+ ||.+ +.+ +..-+++..+.|++-++|=|... +.+.+..-|++++++ |... .-+.-|-+
T Consensus 87 N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~ln-------------dv~nl~~ai~~vk~a----g~~~~~~i~yt~s 149 (499)
T PRK12330 87 NLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALN-------------DPRNLEHAMKAVKKV----GKHAQGTICYTVS 149 (499)
T ss_pred ccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCC-------------hHHHHHHHHHHHHHh----CCeEEEEEEEecC
Confidence 4 6776 444 55668898999999999999642 223333333333333 3211 11122222
Q ss_pred hhcccHHHHHHHHHHHHhcCCCEEEec---cCCCHHHHHHHHHhCCC-CC--ccceeeecCCCCCCCC---HHHHHhcCC
Q 010948 234 RQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPL-VP--KMANMLEGGGKTPILN---PLELEELGF 304 (497)
Q Consensus 234 ~~~~~ldeaIeRAkAY~eAGAD~IfIe---g~~s~eei~~i~~~v~~-vP--~~~N~l~~~g~tP~lt---~~eL~elGv 304 (497)
..+.++..++-++.+.++|||.|.+- |+-+++++.++++.+.. +| +++.+=. --+..+. .-.--+.|+
T Consensus 150 -p~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~--Hnt~GlA~An~laAieAGa 226 (499)
T PRK12330 150 -PIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHC--HSTTGVTLVSLMKAIEAGV 226 (499)
T ss_pred -CCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEe--CCCCCcHHHHHHHHHHcCC
Confidence 24578888999999999999999985 45567777766654311 11 3343321 1133333 344457899
Q ss_pred CEEeccch--HHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcc
Q 010948 305 KLVAYPLS--LIGVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYAT 363 (497)
Q Consensus 305 ~~Vsyp~~--ll~aa~~Am~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~ 363 (497)
++|=.... ..++..-++++.+..|+..+.. ....++.+.++-.+ |.+..++|..
T Consensus 227 d~vDtai~Glg~~aGn~atE~vv~~L~~~g~~---tgiDl~~L~~i~~~--~~~vr~~y~~ 282 (499)
T PRK12330 227 DVVDTAISSMSLGPGHNPTESLVEMLEGTGYT---TKLDMDRLLKIRDH--FKKVRPKYKE 282 (499)
T ss_pred CEEEeecccccccccchhHHHHHHHHHhcCCC---CCCCHHHHHHHHHH--HHHHHHHHhc
Confidence 98865444 4455566677777777643222 12345555443222 4555556654
No 162
>PRK15452 putative protease; Provisional
Probab=94.99 E-value=1.9 Score=47.13 Aligned_cols=147 Identities=11% Similarity=0.014 Sum_probs=94.5
Q ss_pred ccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCC--HHHHHHHHH
Q 010948 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN--AMNVKRTVK 172 (497)
Q Consensus 95 ~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~--~~~V~rtVk 172 (497)
-|-|.-+++.+-++|+|+||+++-..++ . +.....+.+++.+.++.. +..++.|.+=...=..+ ...+.+.++
T Consensus 9 pag~~e~l~aAi~~GADaVY~G~~~~~~-R---~~~~~f~~edl~eav~~a-h~~g~kvyvt~n~i~~e~el~~~~~~l~ 83 (443)
T PRK15452 9 PAGTLKNMRYAFAYGADAVYAGQPRYSL-R---VRNNEFNHENLALGINEA-HALGKKFYVVVNIAPHNAKLKTFIRDLE 83 (443)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCccch-h---hhccCCCHHHHHHHHHHH-HHcCCEEEEEecCcCCHHHHHHHHHHHH
Confidence 3455666667778999999999654432 1 112356777766555443 43444443332222112 346777788
Q ss_pred HHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhc
Q 010948 173 GYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA 252 (497)
Q Consensus 173 ~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eA 252 (497)
.+.++|++||.+-|-. -+..+++ ..+++-|.+-|.....+. .-++.|.+.
T Consensus 84 ~l~~~gvDgvIV~d~G---------------------~l~~~ke----~~p~l~ih~stqlni~N~-----~a~~f~~~l 133 (443)
T PRK15452 84 PVIAMKPDALIMSDPG---------------------LIMMVRE----HFPEMPIHLSVQANAVNW-----ATVKFWQQM 133 (443)
T ss_pred HHHhCCCCEEEEcCHH---------------------HHHHHHH----hCCCCeEEEEecccCCCH-----HHHHHHHHC
Confidence 8889999999997731 1222222 147888988887754332 557889999
Q ss_pred CCCEEEeccCCCHHHHHHHHHhCC
Q 010948 253 GADVLFIDALASKEEMKAFCEISP 276 (497)
Q Consensus 253 GAD~IfIeg~~s~eei~~i~~~v~ 276 (497)
|++.+.+.-=-+.+|++.+.+..+
T Consensus 134 G~~rvvLSrELsl~EI~~i~~~~~ 157 (443)
T PRK15452 134 GLTRVILSRELSLEEIEEIRQQCP 157 (443)
T ss_pred CCcEEEECCcCCHHHHHHHHhhCC
Confidence 999999866567899999987654
No 163
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=1.6 Score=46.12 Aligned_cols=146 Identities=17% Similarity=0.143 Sum_probs=97.7
Q ss_pred CChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-cceEeeCCCCCCCHHHHHHHHHHHH
Q 010948 97 FDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIGDGDNGYGNAMNVKRTVKGYI 175 (497)
Q Consensus 97 yDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-iPVIaD~DtGYG~~~~V~rtVk~l~ 175 (497)
=+--..+.+-++|+|+||+|.-.+. ..+.+ ...|.+|+...++.....-. .-|.+-.=.==+....+.+.++.+.
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~--~R~~a--~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~ 89 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFG--LRRRA--LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLV 89 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccc--ccccc--ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHH
Confidence 3444455666789999999965443 23454 56888887766665544322 2222221111122345789999999
Q ss_pred HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCC
Q 010948 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGAD 255 (497)
Q Consensus 176 ~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD 255 (497)
+.|+++|.+-|=. -|..++ +.+|++-|.+-|-+...+ -+.++-|.+.|+-
T Consensus 90 e~GvDaviv~Dpg---------------------~i~l~~----e~~p~l~ih~S~q~~v~N-----~~~~~f~~~~G~~ 139 (347)
T COG0826 90 ELGVDAVIVADPG---------------------LIMLAR----ERGPDLPIHVSTQANVTN-----AETAKFWKELGAK 139 (347)
T ss_pred HcCCCEEEEcCHH---------------------HHHHHH----HhCCCCcEEEeeeEecCC-----HHHHHHHHHcCCE
Confidence 9999999998831 122222 226888888888775432 2668899999988
Q ss_pred EEEeccCCCHHHHHHHHHhCC
Q 010948 256 VLFIDALASKEEMKAFCEISP 276 (497)
Q Consensus 256 ~IfIeg~~s~eei~~i~~~v~ 276 (497)
-++++---+.++++++.++.|
T Consensus 140 rvVl~rEls~~ei~~i~~~~~ 160 (347)
T COG0826 140 RVVLPRELSLEEIKEIKEQTP 160 (347)
T ss_pred EEEeCccCCHHHHHHHHHhCC
Confidence 888888788999999999875
No 164
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=94.93 E-value=1.7 Score=46.11 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=98.6
Q ss_pred HHHHHHHHHh------CCCceeec-----------------ccCChH-HHHHHHHhCCcEEEecchhhhhhhcccCCCCC
Q 010948 77 PAKSLRQILE------LPGVHQGP-----------------ACFDAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGF 132 (497)
Q Consensus 77 ~a~~Lr~ll~------~~~~iv~p-----------------~ayDal-SAriae~aGfdAI~vSG~avSas~lG~PD~g~ 132 (497)
+..+|.++++ +|+.+++| +.+|.- .-+++.++|++++.+. .++.. .+.++.
T Consensus 48 ~~~rL~Rl~~~g~l~~tGr~vilpvDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~-~G~l~--~~~~~~-- 122 (348)
T PRK09250 48 VLRNLQRLLNHGRLAGTGYLSILPVDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVAST-LGVLE--AVARKY-- 122 (348)
T ss_pred HHHHHHHHhcccccCCCCCEEEEEcccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeC-HHHHH--hccccc--
Confidence 3456888874 45555555 444655 3366667899999988 22221 122221
Q ss_pred CCHHHHHHHHHHHHhhcCcceEeeCCCC----CCCH--HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHH
Q 010948 133 ISYGEMVDQGQLITQAVSIPVIGDGDNG----YGNA--MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREE 206 (497)
Q Consensus 133 ltldEml~~~r~I~ra~~iPVIaD~DtG----YG~~--~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee 206 (497)
..++|+|+-...+ |.++ ..+.-+|+...+.||+||-+-=-. ++. ...+
T Consensus 123 ---------------~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~--------Gs~---~E~~ 176 (348)
T PRK09250 123 ---------------AHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYF--------GSE---ESRR 176 (348)
T ss_pred ---------------cCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEec--------CCH---HHHH
Confidence 1246777777765 3332 345566888999999998773321 111 1246
Q ss_pred HHHHHHHHHHHHHhcCCCeEEE--Eeccchhccc-----HHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHH
Q 010948 207 AVMRIKAAVDARKESGSDIVIV--ARTDSRQALS-----LEESLRRSRAFADAGADVLFIDALASKEEMKAF 271 (497)
Q Consensus 207 ~~~KIrAAv~Ar~~~g~dfvIi--ARTDA~~~~~-----ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i 271 (497)
+++.+.++.+.+++.|..+++. .|-....... .+-.---++.-+|.|||.|=+.-+.+.+.+.++
T Consensus 177 ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 177 QIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence 8888888888888877766653 3322221111 233333466677999999998877666666665
No 165
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=94.88 E-value=0.24 Score=49.75 Aligned_cols=164 Identities=23% Similarity=0.327 Sum_probs=99.5
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCC-CCCCHHH----HHHHHHHHHhhc-Cc
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT-GFISYGE----MVDQGQLITQAV-SI 151 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~-g~ltldE----ml~~~r~I~ra~-~i 151 (497)
-.+||..++++.+++--++--.+||+..|+-|.|-|++=+.+== -+.|++.. +++.+.. +++.++.+--.+ ..
T Consensus 10 ~~~~r~ti~~~s~iig~~~gTglsAkaeeagg~d~i~~~nsgr~-r~ag~~Sl~gLLa~~naN~~vld~a~e~lp~~r~t 88 (276)
T COG5564 10 VASFRYTIHKGSPIIGGGAGTGLSAKAEEAGGIDLIYIYNSGRY-RMAGRGSLAGLLAYGNANDIVLDMAREVLPVVRQT 88 (276)
T ss_pred HHHHHHhhcCCCcccccccccchhhhhhhcCCceEEEEecCccc-cccccchhhhhhhccCccHHHHHHHHhhCCccccC
Confidence 35799999999999999999999999999999999887532210 12367664 3555533 344444432222 35
Q ss_pred ceEeeCCCCCCCHH-HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHH----HHHHHHHHHHHHHhcCCCeE
Q 010948 152 PVIGDGDNGYGNAM-NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREE----AVMRIKAAVDARKESGSDIV 226 (497)
Q Consensus 152 PVIaD~DtGYG~~~-~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee----~~~KIrAAv~Ar~~~g~dfv 226 (497)
||.+-. +| -+|- ....-.+.+..+|..||+ -+| .||..+|.=-.+.|| +...|.-.++|.. .|+.
T Consensus 89 pv~aGv-~~-~DPf~~~~~~L~~L~~~gf~gV~----NFP-Tv~~iDG~~R~~lEetGmG~~~Evemlr~A~~---k~l~ 158 (276)
T COG5564 89 PVLAGV-NG-TDPFCRMVDFLKELKTAGFSGVQ----NFP-TVGLIDGRMRASLEETGMGYGLEVEMLREAHA---KDLL 158 (276)
T ss_pred cceecc-cC-CCcchhHHHHHHHHHhcCCcccc----cCC-eeEEecchhhhhHHHhCcchHHHHHHHHHHHh---cccc
Confidence 665421 11 1342 333445788889999984 233 477777765556655 2223333333332 2444
Q ss_pred EEEeccchhcccHHHHHHHHHHHHhcCCCEEEecc
Q 010948 227 IVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (497)
Q Consensus 227 IiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg 261 (497)
-.+-.+. .+.|++..+||||.|..+.
T Consensus 159 t~~yV~s---------~~eAqa~~~aGadiiv~hm 184 (276)
T COG5564 159 TTPYVFS---------FEEAQAMTKAGADIIVAHM 184 (276)
T ss_pred ccceecC---------HHHHHHHHHcCcceeeecc
Confidence 4444333 3557788899999999863
No 166
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=94.87 E-value=0.34 Score=48.51 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHH
Q 010948 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (497)
Q Consensus 134 tldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrA 213 (497)
..+.+.+.++.+. ..++||++=+--|+. ..+....++.++++||++|+|. +..+ |++-. ..+.|+.
T Consensus 119 dp~~l~~iv~av~-~~~~PVsvKiR~~~~-~~~~~~~a~~l~~aGad~i~Vd-~~~~-------g~~~a----~~~~I~~ 184 (231)
T TIGR00736 119 NKELLKEFLTKMK-ELNKPIFVKIRGNCI-PLDELIDALNLVDDGFDGIHVD-AMYP-------GKPYA----DMDLLKI 184 (231)
T ss_pred CHHHHHHHHHHHH-cCCCcEEEEeCCCCC-cchHHHHHHHHHHcCCCEEEEe-eCCC-------CCchh----hHHHHHH
Confidence 4445555566665 348999999998863 3456678889999999999994 4321 11111 1233444
Q ss_pred HHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEe
Q 010948 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (497)
Q Consensus 214 Av~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfI 259 (497)
++++. .++.|+|--|-.. .+.+..+.++|||+|.+
T Consensus 185 i~~~~----~~ipIIgNGgI~s-------~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 185 LSEEF----NDKIIIGNNSIDD-------IESAKEMLKAGADFVSV 219 (231)
T ss_pred HHHhc----CCCcEEEECCcCC-------HHHHHHHHHhCCCeEEE
Confidence 44432 2467888766653 35556666689999987
No 167
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.87 E-value=2.6 Score=46.42 Aligned_cols=234 Identities=16% Similarity=0.155 Sum_probs=130.6
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCC--CCCC-HHH-HHHHHHHHHH
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMN-VKRTVKGYIK 176 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~Dt--GYG~-~~~-V~rtVk~l~~ 176 (497)
-|..++++||.++=+.|.+.--+++++-.. +--|.+..++.....+.+-.+.=.-+ ||-+ +.+ +...+++..+
T Consensus 40 ia~~ld~~G~~siE~wGGAtfd~~~rfl~e---dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~ 116 (468)
T PRK12581 40 VLTILDKIGYYSLECWGGATFDACIRFLNE---DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQ 116 (468)
T ss_pred HHHHHHhcCCCEEEecCCcchhhhhcccCC---CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHH
Confidence 457778899999988754322234555442 23455555555544343333332444 4554 445 4455788889
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC--eEEEEeccchhcccHHHHHHHHHHHHhcCC
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGA 254 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d--fvIiARTDA~~~~~ldeaIeRAkAY~eAGA 254 (497)
.|++-+.|=|.. . ..+.+..-|+++ ++.|.. +.|..-++. .+.++=.++-++.++++||
T Consensus 117 ~Gidi~Rifd~l-----n--------d~~n~~~ai~~a----k~~G~~~~~~i~yt~sp--~~t~~y~~~~a~~l~~~Ga 177 (468)
T PRK12581 117 NGIDVFRIFDAL-----N--------DPRNIQQALRAV----KKTGKEAQLCIAYTTSP--VHTLNYYLSLVKELVEMGA 177 (468)
T ss_pred CCCCEEEEcccC-----C--------CHHHHHHHHHHH----HHcCCEEEEEEEEEeCC--cCcHHHHHHHHHHHHHcCC
Confidence 999999998853 1 233333334433 333432 222222222 3466777888999999999
Q ss_pred CEEEec---cCCCHHHHHHHHHhCCCC-CccceeeecCCCCCCCC---HHHHHhcCCCEEeccch--HHHHHHHHHHHHH
Q 010948 255 DVLFID---ALASKEEMKAFCEISPLV-PKMANMLEGGGKTPILN---PLELEELGFKLVAYPLS--LIGVSVRAMQDAL 325 (497)
Q Consensus 255 D~IfIe---g~~s~eei~~i~~~v~~v-P~~~N~l~~~g~tP~lt---~~eL~elGv~~Vsyp~~--ll~aa~~Am~~al 325 (497)
|.|.|- |+-+++++.++++.+... .+++.+ .. -.+..+. .-.--+.|+++|--... .-++..-+++..+
T Consensus 178 d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~-H~-Hnt~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv 255 (468)
T PRK12581 178 DSICIKDMAGILTPKAAKELVSGIKAMTNLPLIV-HT-HATSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMY 255 (468)
T ss_pred CEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEE-Ee-CCCCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHH
Confidence 999985 456777887777654321 123332 11 1233332 34455789888755433 2345566666666
Q ss_pred HHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcc
Q 010948 326 TAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYAT 363 (497)
Q Consensus 326 ~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~ 363 (497)
..|+..+.. ....++.+.++..+ +.+..++|.+
T Consensus 256 ~~L~~~g~~---tgiDl~~L~~~a~~--~~~vr~~y~~ 288 (468)
T PRK12581 256 LALKEAGYD---ITLDETLLEQAANH--LRQARQKYLA 288 (468)
T ss_pred HHHHhcCCC---CCcCHHHHHHHHHH--HHHHHHHhcc
Confidence 666643222 12334444443322 6666677765
No 168
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.86 E-value=1.9 Score=44.18 Aligned_cols=138 Identities=15% Similarity=0.073 Sum_probs=83.1
Q ss_pred ChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhh---cCcceE------eeCCC-CCCCHHHH
Q 010948 98 DALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA---VSIPVI------GDGDN-GYGNAMNV 167 (497)
Q Consensus 98 DalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra---~~iPVI------aD~Dt-GYG~~~~V 167 (497)
..-.-..+-++|.+.+-+.- .+|-. + .-.....+.+|.++.++.+.+. .++.+. ...+. |.-++..+
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~-~~s~~-~-~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~ 157 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFA-SASEA-F-SQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAV 157 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEE-ecCHH-H-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHH
Confidence 33333556678999877661 11111 1 1112236788877776665543 345553 23333 33467789
Q ss_pred HHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHH
Q 010948 168 KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSR 247 (497)
Q Consensus 168 ~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAk 247 (497)
.+.++.+.++|++.|.|-|.. | +..+.++.+.++++++... +.++-+=...|. --++.-+.
T Consensus 158 ~~~~~~~~~~G~d~i~l~DT~-----G------~~~P~~v~~lv~~l~~~~~--~~~i~~H~Hn~~------Gla~AN~l 218 (287)
T PRK05692 158 ADVAERLFALGCYEISLGDTI-----G------VGTPGQVRAVLEAVLAEFP--AERLAGHFHDTY------GQALANIY 218 (287)
T ss_pred HHHHHHHHHcCCcEEEecccc-----C------ccCHHHHHHHHHHHHHhCC--CCeEEEEecCCC------CcHHHHHH
Confidence 999999999999999999986 3 3345667777777776531 122333233222 23566677
Q ss_pred HHHhcCCCEE
Q 010948 248 AFADAGADVL 257 (497)
Q Consensus 248 AY~eAGAD~I 257 (497)
+..+|||+.|
T Consensus 219 aA~~aG~~~i 228 (287)
T PRK05692 219 ASLEEGITVF 228 (287)
T ss_pred HHHHhCCCEE
Confidence 7789999975
No 169
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=94.82 E-value=4.7 Score=40.64 Aligned_cols=87 Identities=13% Similarity=0.133 Sum_probs=62.1
Q ss_pred HHHHHHhCCCcee--ecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC
Q 010948 80 SLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (497)
Q Consensus 80 ~Lr~ll~~~~~iv--~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~ 157 (497)
.|++++++++++. .....++..+.++..+|||.+++=- -| +.++++++.+.++.+ +..+++.+|=.
T Consensus 2 ~lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~------EH-----g~~~~~~~~~~~~a~-~~~g~~~~VRv 69 (249)
T TIGR03239 2 RFRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDG------EH-----APNDVLTFIPQLMAL-KGSASAPVVRP 69 (249)
T ss_pred hHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEec------cc-----CCCCHHHHHHHHHHH-hhcCCCcEEEC
Confidence 4788888888753 3466788889999999999999752 12 356777777777765 44566667666
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 158 DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
+.. ++ ..+++..++|+.||.+
T Consensus 70 p~~--~~----~~i~r~LD~Ga~gIiv 90 (249)
T TIGR03239 70 PWN--EP----VIIKRLLDIGFYNFLI 90 (249)
T ss_pred CCC--CH----HHHHHHhcCCCCEEEe
Confidence 554 33 4456777899999976
No 170
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.82 E-value=0.12 Score=52.62 Aligned_cols=136 Identities=24% Similarity=0.272 Sum_probs=85.3
Q ss_pred HHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch-hcccHHHHHHHHHH
Q 010948 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRRSRA 248 (497)
Q Consensus 170 tVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~-~~~~ldeaIeRAkA 248 (497)
+++.++++|+++|-.-|...--..||.+. ..++.+||+..+++++++.. ..+ |++=..-. ...+.+++++++.+
T Consensus 27 sArl~e~aG~d~i~vGds~~~~~lG~~Dt-~~vtl~em~~h~~~V~r~~~---~p~-vvaD~pfg~y~~~~~~av~~a~r 101 (264)
T PRK00311 27 FAKLFDEAGVDVILVGDSLGMVVLGYDST-LPVTLDDMIYHTKAVARGAP---RAL-VVADMPFGSYQASPEQALRNAGR 101 (264)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHcCCCCC-CCcCHHHHHHHHHHHHhcCC---CCc-EEEeCCCCCccCCHHHHHHHHHH
Confidence 45677889999998866653234677553 47899999999999887742 234 44444211 12456889999776
Q ss_pred HHh-cCCCEEEeccCCC-HHHHHHHHHhCCCCCcc---------ceeeec---CCCCCC-----C-CHHHHHhcCCCEEe
Q 010948 249 FAD-AGADVLFIDALAS-KEEMKAFCEISPLVPKM---------ANMLEG---GGKTPI-----L-NPLELEELGFKLVA 308 (497)
Q Consensus 249 Y~e-AGAD~IfIeg~~s-~eei~~i~~~v~~vP~~---------~N~l~~---~g~tP~-----l-t~~eL~elGv~~Vs 308 (497)
..+ +||++|.+|+-.. .+.++.++++ ++|++ .|.+.+ .|++.. + ....|+++|...+.
T Consensus 102 ~~~~aGa~aVkiEdg~~~~~~I~al~~a--gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~ 179 (264)
T PRK00311 102 LMKEAGAHAVKLEGGEEVAETIKRLVER--GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALV 179 (264)
T ss_pred HHHHhCCeEEEEcCcHHHHHHHHHHHHC--CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEE
Confidence 666 9999999998522 2345555543 34543 222210 123221 1 23567888998888
Q ss_pred ccch
Q 010948 309 YPLS 312 (497)
Q Consensus 309 yp~~ 312 (497)
....
T Consensus 180 lE~v 183 (264)
T PRK00311 180 LECV 183 (264)
T ss_pred EcCC
Confidence 8655
No 171
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=94.71 E-value=0.81 Score=48.62 Aligned_cols=152 Identities=22% Similarity=0.302 Sum_probs=85.4
Q ss_pred HHHHHHHHHhCccEEEecC---CC---------CCCCCCCCCCccccCHHHHHHH-HHHHHHHHHhcCCCeEEEEeccch
Q 010948 168 KRTVKGYIKAGFAGIILED---QV---------SPKGCGHTRGRKVVSREEAVMR-IKAAVDARKESGSDIVIVARTDSR 234 (497)
Q Consensus 168 ~rtVk~l~~AGaAGI~IED---q~---------~pKrCGH~~gk~lvp~ee~~~K-IrAAv~Ar~~~g~dfvIiARTDA~ 234 (497)
.+++++.++||.+||.|-- +. ..||.-.-+| .+...-.++-. |++++++ .|++|.|-.|....
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGG-slenR~rf~~eii~~vr~~---~g~~f~v~vri~~~ 228 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGG-SLENRLRFAIEIVEEIKAR---CGEDFPVSLRYSVK 228 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCC-CHHHHhHHHHHHHHHHHHh---cCCCceEEEEEech
Confidence 4455667789999998865 21 2455554444 23322222222 2333322 46788888885431
Q ss_pred ------------------hcccHHHHHHHHHHHHhcCCCEEEeccCC---------C--------HHHHHHHHHhCCCCC
Q 010948 235 ------------------QALSLEESLRRSRAFADAGADVLFIDALA---------S--------KEEMKAFCEISPLVP 279 (497)
Q Consensus 235 ------------------~~~~ldeaIeRAkAY~eAGAD~IfIeg~~---------s--------~eei~~i~~~v~~vP 279 (497)
....++|+++-++.++++|+|.|=+.+-. . .+.++.+.+.+. +|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~p 307 (382)
T cd02931 229 SYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVD-VP 307 (382)
T ss_pred hhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCC-CC
Confidence 12357999999999999999999775311 0 134455556554 56
Q ss_pred ccceeeecCCC-CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCCC
Q 010948 280 KMANMLEGGGK-TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRI 333 (497)
Q Consensus 280 ~~~N~l~~~g~-tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~~g~~ 333 (497)
+++| ++- +|..-.+-|++-++..|.++=.++. =-+..+.+++|+.
T Consensus 308 vi~~----G~i~~~~~~~~~l~~g~~D~V~~gR~~la-----dP~l~~k~~~g~~ 353 (382)
T cd02931 308 VIMA----GRMEDPELASEAINEGIADMISLGRPLLA-----DPDVVNKIRRGRF 353 (382)
T ss_pred EEEe----CCCCCHHHHHHHHHcCCCCeeeechHhHh-----CccHHHHHHcCCc
Confidence 5533 221 2211123344445888887654433 2345566666653
No 172
>PLN02858 fructose-bisphosphate aldolase
Probab=94.69 E-value=3.2 Score=51.29 Aligned_cols=212 Identities=15% Similarity=0.128 Sum_probs=133.7
Q ss_pred HHHHHhCCCceeecccCChHHHHH----HHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEee
Q 010948 81 LRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (497)
Q Consensus 81 Lr~ll~~~~~iv~p~ayDalSAri----ae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD 156 (497)
|....+++-.+-..||||.-+++. +|+.+.++|+.-+-... ...| ++ +...++..++..++||.+=
T Consensus 1106 l~~A~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~-~~~~--------~~-~~~~~~~~a~~~~vpV~lH 1175 (1378)
T PLN02858 1106 LLNAEKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGAL-KQGG--------IP-LVSCCIAAAEQASVPITVH 1175 (1378)
T ss_pred HHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHH-hhcC--------HH-HHHHHHHHHHHCCCCEEEE
Confidence 444444444588899999999865 46679999987754321 1122 33 5666677777789999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC----eEEE-Eec
Q 010948 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVIV-ART 231 (497)
Q Consensus 157 ~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d----fvIi-ART 231 (497)
.|+|. +. +.+++.+++|...|.|... | .|.||-+++-+.+++-++..|.. +=-+ +-.
T Consensus 1176 LDHg~-~~----~~i~~ai~~Gf~SVM~DgS-------~------l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e 1237 (1378)
T PLN02858 1176 FDHGT-SK----HELLEALELGFDSVMVDGS-------H------LSFTENISYTKSISSLAHSKGLMVEAELGRLSGTE 1237 (1378)
T ss_pred CCCCC-CH----HHHHHHHHhCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 99995 33 3455667789999999432 3 36788888888888877654311 1011 111
Q ss_pred cchhcccHH---HHHHHHHHHHh-cCCCEEEe-----ccC-------CCHHHHHHHHHhCC--CCCccceeeecCCCCCC
Q 010948 232 DSRQALSLE---ESLRRSRAFAD-AGADVLFI-----DAL-------ASKEEMKAFCEISP--LVPKMANMLEGGGKTPI 293 (497)
Q Consensus 232 DA~~~~~ld---eaIeRAkAY~e-AGAD~IfI-----eg~-------~s~eei~~i~~~v~--~vP~~~N~l~~~g~tP~ 293 (497)
|.......+ --.+.|+.|.+ -|+|++-+ ||+ -+.+.+++|.+.++ .+|+ ++.++..+|.
T Consensus 1238 ~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpL---VlHGgSG~~~ 1314 (1378)
T PLN02858 1238 DGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLL---VLHGASGLPE 1314 (1378)
T ss_pred CCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcE---EEeCCCCCCH
Confidence 210000000 01255666764 69998754 333 13467888888873 3564 4565444443
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHH
Q 010948 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQD 323 (497)
Q Consensus 294 lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~ 323 (497)
-.+.+.-+.|++-|=+...+..+.++++++
T Consensus 1315 ~~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~ 1344 (1378)
T PLN02858 1315 SLIKECIENGVRKFNVNTEVRTAYMEALSS 1344 (1378)
T ss_pred HHHHHHHHcCCeEEEeCHHHHHHHHHHHhC
Confidence 334555578999999999998888877763
No 173
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.61 E-value=1.3 Score=44.94 Aligned_cols=126 Identities=22% Similarity=0.231 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHh-CccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEE-EeccchhcccHH
Q 010948 163 NAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV-ARTDSRQALSLE 240 (497)
Q Consensus 163 ~~~~V~rtVk~l~~A-GaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi-ARTDA~~~~~ld 240 (497)
++..+.++++.--++ |-.=||||=- .+.+.|.| +..+.|+|+..-.+ .+|.++ -=+|.
T Consensus 74 ta~eAv~~a~lare~~~~~~iKlEVi--------~d~~~Llp--d~~~tv~aa~~L~~---~Gf~vlpyc~dd------- 133 (248)
T cd04728 74 TAEEAVRTARLAREALGTDWIKLEVI--------GDDKTLLP--DPIETLKAAEILVK---EGFTVLPYCTDD------- 133 (248)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEe--------cCcccccc--CHHHHHHHHHHHHH---CCCEEEEEeCCC-------
Confidence 566666776666664 6788888852 23344554 34667777776654 478888 44444
Q ss_pred HHHHHHHHHHhcCCCEEEec--------cCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 010948 241 ESLRRSRAFADAGADVLFID--------ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 241 eaIeRAkAY~eAGAD~IfIe--------g~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
+.-|++++++|+++|.+. ++.+.+.++.+.+.. .+|++ .+++-.+| -...+..++|+.-|..+..
T Consensus 134 --~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~-~vpVI---~egGI~tp-eda~~AmelGAdgVlV~SA 206 (248)
T cd04728 134 --PVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERA-DVPVI---VDAGIGTP-SDAAQAMELGADAVLLNTA 206 (248)
T ss_pred --HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhC-CCcEE---EeCCCCCH-HHHHHHHHcCCCEEEEChH
Confidence 466999999999999662 345788888888874 36654 33322233 2456778899999999888
Q ss_pred HHH
Q 010948 313 LIG 315 (497)
Q Consensus 313 ll~ 315 (497)
..+
T Consensus 207 It~ 209 (248)
T cd04728 207 IAK 209 (248)
T ss_pred hcC
Confidence 765
No 174
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.58 E-value=1.1 Score=44.87 Aligned_cols=178 Identities=13% Similarity=0.203 Sum_probs=101.1
Q ss_pred ChHH-HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHH
Q 010948 98 DALS-AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (497)
Q Consensus 98 DalS-Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~ 176 (497)
|+.. |+..++.|++.+++.=..-+ ..+.+ ..+..++.|++.+++||+++. |..+.. .++++..
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~--~~~~~--------~n~~~i~~i~~~~~~pv~~gG--Gi~s~~----d~~~l~~ 94 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDAS--KRGSE--------PNYELIENLASECFMPLCYGG--GIKTLE----QAKKIFS 94 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCC--cCCCc--------ccHHHHHHHHHhCCCCEEECC--CCCCHH----HHHHHHH
Confidence 4443 57778899999999843321 01111 235567778887889998874 443433 3456667
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeE---EEEecc-----chh-----cccHHHHH
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV---IVARTD-----SRQ-----ALSLEESL 243 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfv---IiARTD-----A~~-----~~~ldeaI 243 (497)
+|+.+|.|- .. ++..-+++.++.... +.+-+ |-.|.. ... ...-...+
T Consensus 95 ~G~~~vvig-s~------------~~~~~~~~~~~~~~~------~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~ 155 (258)
T PRK01033 95 LGVEKVSIN-TA------------ALEDPDLITEAAERF------GSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPL 155 (258)
T ss_pred CCCCEEEEC-hH------------HhcCHHHHHHHHHHh------CCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHH
Confidence 899999873 21 111113333332221 11111 112211 000 00001235
Q ss_pred HHHHHHHhcCCCEEEeccCC--------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHH-hcCCCEEeccchHH
Q 010948 244 RRSRAFADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELE-ELGFKLVAYPLSLI 314 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIeg~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~-elGv~~Vsyp~~ll 314 (497)
+-++.+.++||+.+.+.++. +.+.++++++.++ +|+. ..||-...-++.++. +.|+.-|+.+..+.
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~-ipvI----asGGv~s~eD~~~l~~~~GvdgVivg~a~~ 230 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALK-IPLI----ALGGAGSLDDIVEAILNLGADAAAAGSLFV 230 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCC-CCEE----EeCCCCCHHHHHHHHHHCCCCEEEEcceee
Confidence 66777889999999988653 4678888888754 5654 334533222455555 68999999887665
Q ss_pred H
Q 010948 315 G 315 (497)
Q Consensus 315 ~ 315 (497)
+
T Consensus 231 ~ 231 (258)
T PRK01033 231 F 231 (258)
T ss_pred e
Confidence 5
No 175
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=94.56 E-value=2.1 Score=38.55 Aligned_cols=171 Identities=17% Similarity=0.121 Sum_probs=89.3
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHH-HHHHHHHHHHHhCc
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM-NVKRTVKGYIKAGF 179 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~-~V~rtVk~l~~AGa 179 (497)
.++.+.+.|++++.+...... ..+. . .... .....+++..++|++++.=.. +.. .+...++.+.++|+
T Consensus 17 ~~~~~~~~G~~~v~~~~~~~~--~~~~--~-~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~g~ 85 (200)
T cd04722 17 LAKAAAEAGADAIIVGTRSSD--PEEA--E-TDDK----EVLKEVAAETDLPLGVQLAIN--DAAAAVDIAAAAARAAGA 85 (200)
T ss_pred HHHHHHcCCCCEEEEeeEEEC--cccC--C-Cccc----cHHHHHHhhcCCcEEEEEccC--CchhhhhHHHHHHHHcCC
Confidence 345566678888877742221 1111 1 0100 345556666789988876322 222 22233678889999
Q ss_pred cEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEe
Q 010948 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (497)
Q Consensus 180 AGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfI 259 (497)
++|+|-.. |++. .+...+-++++++.. +++.|..+...... .+++ . +.++|+|.|.+
T Consensus 86 d~v~l~~~-----~~~~-------~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~--~~~~----~-~~~~g~d~i~~ 142 (200)
T cd04722 86 DGVEIHGA-----VGYL-------AREDLELIRELREAV----PDVKVVVKLSPTGE--LAAA----A-AEEAGVDEVGL 142 (200)
T ss_pred CEEEEecc-----CCcH-------HHHHHHHHHHHHHhc----CCceEEEEECCCCc--cchh----h-HHHcCCCEEEE
Confidence 99999664 2221 122233334443332 36677766654321 1111 1 67899999988
Q ss_pred ccCCC-----------HHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEecc
Q 010948 260 DALAS-----------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (497)
Q Consensus 260 eg~~s-----------~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp 310 (497)
..... ...++.+.+ .+.+|.+ ..+|-+..-+..++.+.|...|..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pi~----~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 143 GNGGGGGGGRDAVPIADLLLILAKR-GSKVPVI----AGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred cCCcCCCCCccCchhHHHHHHHHHh-cCCCCEE----EECCCCCHHHHHHHHHhCCCEEEec
Confidence 65311 122333333 2334543 2334332245677777898888765
No 176
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.51 E-value=0.51 Score=46.20 Aligned_cols=142 Identities=23% Similarity=0.292 Sum_probs=86.9
Q ss_pred HHHHHHHhhcCcceEeeCCCCCCCH----HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHH
Q 010948 140 DQGQLITQAVSIPVIGDGDNGYGNA----MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (497)
Q Consensus 140 ~~~r~I~ra~~iPVIaD~DtGYG~~----~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv 215 (497)
++++.|...+++|||.=.-..|.+. .-..+-|+.+.++|++-|-|.- +. ..++ .+.++++.+|+..
T Consensus 22 ~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa-T~-------R~Rp-~~l~~li~~i~~~- 91 (192)
T PF04131_consen 22 EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA-TD-------RPRP-ETLEELIREIKEK- 91 (192)
T ss_dssp HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE--SS-------SS-S-S-HHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec-CC-------CCCC-cCHHHHHHHHHHh-
Confidence 4678899999999997665556531 2456778899999999999944 32 1233 6778888887531
Q ss_pred HHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec--c--------CCCHHHHHHHHHhCCCCCccceee
Q 010948 216 DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID--A--------LASKEEMKAFCEISPLVPKMANML 285 (497)
Q Consensus 216 ~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe--g--------~~s~eei~~i~~~v~~vP~~~N~l 285 (497)
+ .+++|=+.. ++.++...++|+|+|=-- | .++.+.++++++. .+|+ +.
T Consensus 92 ------~--~l~MADist---------~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~--~~pv---Ia 149 (192)
T PF04131_consen 92 ------Y--QLVMADIST---------LEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA--DVPV---IA 149 (192)
T ss_dssp ------T--SEEEEE-SS---------HHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT--TSEE---EE
T ss_pred ------C--cEEeeecCC---------HHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC--CCcE---ee
Confidence 2 788887765 466777889999998642 1 1345788888875 3553 34
Q ss_pred ecCCCCCCCCH---HHHHhcCCCEEeccchHHHHH
Q 010948 286 EGGGKTPILNP---LELEELGFKLVAYPLSLIGVS 317 (497)
Q Consensus 286 ~~~g~tP~lt~---~eL~elGv~~Vsyp~~ll~aa 317 (497)
|+ +. .++ .+..++|..-|..|....|..
T Consensus 150 EG--ri--~tpe~a~~al~~GA~aVVVGsAITrP~ 180 (192)
T PF04131_consen 150 EG--RI--HTPEQAAKALELGAHAVVVGSAITRPQ 180 (192)
T ss_dssp ES--S----SHHHHHHHHHTT-SEEEE-HHHH-HH
T ss_pred cC--CC--CCHHHHHHHHhcCCeEEEECcccCCHH
Confidence 53 32 244 566678999999998776653
No 177
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.50 E-value=2 Score=44.68 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCcEEEecc---hhhhhhh----cccCCCCCCCHH----HHHHHHHHHHhhc--CcceEeeCC------CC
Q 010948 100 LSAKLVEKSGFSFCFTSG---FSISAAR----LALPDTGFISYG----EMVDQGQLITQAV--SIPVIGDGD------NG 160 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG---~avSas~----lG~PD~g~ltld----Eml~~~r~I~ra~--~iPVIaD~D------tG 160 (497)
-+|+.+.++|||+|-+-+ +-+.-.. .=--|.-.=+++ -+++.++.|.+++ +.||.+|+- .|
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g 232 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGG 232 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCC
Confidence 467888999999998763 2222100 001122112444 3455677777777 489999984 45
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEecCCC
Q 010948 161 YGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AGaAGI~IEDq~ 188 (497)
+ +.+...+.++.++++|++-|++-...
T Consensus 233 ~-~~eea~~ia~~Le~~Gvd~iev~~g~ 259 (338)
T cd04733 233 F-TEEDALEVVEALEEAGVDLVELSGGT 259 (338)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 4 45677888999999999999986543
No 178
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=94.49 E-value=8.1 Score=41.31 Aligned_cols=233 Identities=10% Similarity=0.006 Sum_probs=138.2
Q ss_pred HHHHHHhCCCceeecccCChHHHHHH----HHhCCcEEEecchhhhhhhcc--c----CCCCC-CCHHHHHHHHHHHHhh
Q 010948 80 SLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLA--L----PDTGF-ISYGEMVDQGQLITQA 148 (497)
Q Consensus 80 ~Lr~ll~~~~~iv~p~ayDalSAria----e~aGfdAI~vSG~avSas~lG--~----PD~g~-ltldEml~~~r~I~ra 148 (497)
-|....+.+-.+.+.|+|+.-+++.+ |+...++|+..+-+.....-| + ||... +....+...++.++..
T Consensus 18 lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~ 97 (357)
T TIGR01520 18 LFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEH 97 (357)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 34444445556888999999998754 566899998775443211112 3 44432 4556677888888888
Q ss_pred cCcceEeeCCCCCCC-HHHHHHHHHH----HHHhC---ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHh
Q 010948 149 VSIPVIGDGDNGYGN-AMNVKRTVKG----YIKAG---FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (497)
Q Consensus 149 ~~iPVIaD~DtGYG~-~~~V~rtVk~----l~~AG---aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~ 220 (497)
.++||.+=.|+|.-- ...+.+.++. ++..| ...|.|... | .|.||-++.-+.+++-++.
T Consensus 98 a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS-------~------lpfeENI~~TrevVe~Ah~ 164 (357)
T TIGR01520 98 YGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLS-------E------EPIEENIEICVKYLKRMAK 164 (357)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCC-------C------CCHHHHHHHHHHHHHHHHH
Confidence 899999999999531 1234444332 23344 899998442 3 4678888888888777654
Q ss_pred cCCC----eEEE-EeccchhcccH--H---HHHHHHHHHHh-----cCCCEEEe-----ccCC-------CHHHHHHHH-
Q 010948 221 SGSD----IVIV-ARTDSRQALSL--E---ESLRRSRAFAD-----AGADVLFI-----DALA-------SKEEMKAFC- 272 (497)
Q Consensus 221 ~g~d----fvIi-ARTDA~~~~~l--d---eaIeRAkAY~e-----AGAD~IfI-----eg~~-------s~eei~~i~- 272 (497)
.|.. +=.+ +..|....... + ---+.|+.|.+ -|+|++-+ +|+. +.+.+++|.
T Consensus 165 ~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~ 244 (357)
T TIGR01520 165 IKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQE 244 (357)
T ss_pred cCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHH
Confidence 3310 0011 11111000000 0 01244566654 28898753 4432 346677773
Q ss_pred ---HhCCCCC----ccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 010948 273 ---EISPLVP----KMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (497)
Q Consensus 273 ---~~v~~vP----~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~ 327 (497)
+.++ +| .++ +|.++...|.-.+.+.-++|++-|=+..-+..+...++++.+..
T Consensus 245 ~~~~~~~-vP~~~~~pL-VLHGgSGi~~e~i~kai~~GI~KINi~Tdl~~A~~~a~~~~~~~ 304 (357)
T TIGR01520 245 YVSEKLG-LPAAKPLFF-VFHGGSGSTKQEIKEALSYGVVKMNIDTDTQWAYWEGILNYYKN 304 (357)
T ss_pred HHHHhcC-CCcCCCCcE-EEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHHh
Confidence 4443 45 222 45654333333345555789999999999999999999998753
No 179
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.48 E-value=1 Score=43.62 Aligned_cols=144 Identities=18% Similarity=0.165 Sum_probs=79.1
Q ss_pred HHHHHHhhcCcceEe----eCCCC---CCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHH
Q 010948 141 QGQLITQAVSIPVIG----DGDNG---YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (497)
Q Consensus 141 ~~r~I~ra~~iPVIa----D~DtG---YG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrA 213 (497)
..+.|.+.+++|+++ |.+.. .|. -...++...++||+.|.+--.. ..... -...++++++
T Consensus 51 ~~~~i~~~~~iPil~~~~~~~~~~~~~ig~---~~~~~~~a~~aGad~I~~~~~~-----~~~p~--~~~~~~~i~~--- 117 (219)
T cd04729 51 DIRAIRARVDLPIIGLIKRDYPDSEVYITP---TIEEVDALAAAGADIIALDATD-----RPRPD--GETLAELIKR--- 117 (219)
T ss_pred HHHHHHHhCCCCEEEEEecCCCCCCceeCC---CHHHHHHHHHcCCCEEEEeCCC-----CCCCC--CcCHHHHHHH---
Confidence 344555557899985 55431 121 1346678889999988773221 00000 0122333333
Q ss_pred HHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec--c---------CCCHHHHHHHHHhCCCCCccc
Q 010948 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID--A---------LASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 214 Av~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe--g---------~~s~eei~~i~~~v~~vP~~~ 282 (497)
+++. + ++.++.-.. . .+++++..++|+|.+.+. + ..+.+.++++.+.+. +|.+
T Consensus 118 ~~~~----g-~~~iiv~v~-----t----~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~-ipvi- 181 (219)
T cd04729 118 IHEE----Y-NCLLMADIS-----T----LEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG-IPVI- 181 (219)
T ss_pred HHHH----h-CCeEEEECC-----C----HHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcC-CCEE-
Confidence 3332 3 344443222 2 234577788999998653 1 133466777777663 5644
Q ss_pred eeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 283 N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
..+|-...-+.+++.++|+.-|..+..+++.
T Consensus 182 ---a~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 182 ---AEGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred ---EeCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 3334221135677788999999999876654
No 180
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=94.48 E-value=1.4 Score=41.68 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=86.6
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
.++.++++|+|.|-+. ++ ...-.|... .-+..++.|+..++.|+.+|.= .| ++ .+-++.+.++|++
T Consensus 16 ~~~~~~~~g~d~i~~~---~~-Dg~~~~~~~-----~~~~~v~~i~~~~~~~v~v~lm-~~-~~---~~~~~~~~~~gad 81 (210)
T TIGR01163 16 EVKAVEEAGADWIHVD---VM-DGHFVPNLT-----FGPPVLEALRKYTDLPIDVHLM-VE-NP---DRYIEDFAEAGAD 81 (210)
T ss_pred HHHHHHHcCCCEEEEc---CC-CCCCCCCcc-----cCHHHHHHHHhcCCCcEEEEee-eC-CH---HHHHHHHHHcCCC
Confidence 3466778899999875 21 111123222 2334556666556677654431 12 23 3447788899999
Q ss_pred EEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 181 GI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
||++=+.. .++....++.++.. +..+.+.--.+. . .++.++|. .++|.+.+-
T Consensus 82 gv~vh~~~---------------~~~~~~~~~~~~~~----g~~~~~~~~~~t----~----~e~~~~~~-~~~d~i~~~ 133 (210)
T TIGR01163 82 IITVHPEA---------------SEHIHRLLQLIKDL----GAKAGIVLNPAT----P----LEFLEYVL-PDVDLVLLM 133 (210)
T ss_pred EEEEccCC---------------chhHHHHHHHHHHc----CCcEEEEECCCC----C----HHHHHHHH-hhCCEEEEE
Confidence 98884421 12333333333322 444433311111 1 35566664 468987662
Q ss_pred cC----C----CH---HHHHHHHHhCCC--CCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 261 AL----A----SK---EEMKAFCEISPL--VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 261 g~----~----s~---eei~~i~~~v~~--vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
+. . .. +.++++.+.+.. .+.+ ++..||-++ -+..++.+.|+..++.+..++.
T Consensus 134 ~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~--i~v~GGI~~-env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 134 SVNPGFGGQKFIPDTLEKIREVRKMIDENGLSIL--IEVDGGVND-DNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred EEcCCCCcccccHHHHHHHHHHHHHHHhcCCCce--EEEECCcCH-HHHHHHHHcCCCEEEEChHHhC
Confidence 21 1 11 233334332211 1112 223335443 3567777889999999987764
No 181
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=94.47 E-value=3.2 Score=42.93 Aligned_cols=183 Identities=14% Similarity=0.118 Sum_probs=106.1
Q ss_pred HHHHHHhCCCcee---ecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEee
Q 010948 80 SLRQILELPGVHQ---GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (497)
Q Consensus 80 ~Lr~ll~~~~~iv---~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD 156 (497)
.|.+++.-.-|++ |.++-++--|..+.++|. +++ +|. +..+.+++-..++.+...++.|+=++
T Consensus 3 ~l~~~lgi~~Pii~apM~~~s~~~la~avs~aGg-------lG~----l~~---~~~~~~~l~~~i~~~~~~t~~pfgvn 68 (307)
T TIGR03151 3 RLCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGG-------LGI----IGA---GNAPPDVVRKEIRKVKELTDKPFGVN 68 (307)
T ss_pred hhhHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCC-------cce----ecc---ccCCHHHHHHHHHHHHHhcCCCcEEe
Confidence 4666665555554 345666555555555652 221 111 23467888777788776666665333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhc
Q 010948 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA 236 (497)
Q Consensus 157 ~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~ 236 (497)
.-. -.+ ...+.++.+++.|+..|-+-- |+ | +++++++++. +..|++-...
T Consensus 69 ~~~--~~~-~~~~~~~~~~~~~v~~v~~~~-------g~-------p-~~~i~~lk~~---------g~~v~~~v~s--- 118 (307)
T TIGR03151 69 IML--LSP-FVDELVDLVIEEKVPVVTTGA-------GN-------P-GKYIPRLKEN---------GVKVIPVVAS--- 118 (307)
T ss_pred eec--CCC-CHHHHHHHHHhCCCCEEEEcC-------CC-------c-HHHHHHHHHc---------CCEEEEEcCC---
Confidence 211 111 234556677788999887611 11 2 3466665432 3455553322
Q ss_pred ccHHHHHHHHHHHHhcCCCEEEeccC---------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEE
Q 010948 237 LSLEESLRRSRAFADAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (497)
Q Consensus 237 ~~ldeaIeRAkAY~eAGAD~IfIeg~---------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~V 307 (497)
++-++..+++|||.|.+++. .+.+.+.++.+.++ +|++++ ||-...-+.....++|..-|
T Consensus 119 ------~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~-iPviaa----GGI~~~~~~~~al~~GA~gV 187 (307)
T TIGR03151 119 ------VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVS-IPVIAA----GGIADGRGMAAAFALGAEAV 187 (307)
T ss_pred ------HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhC-CCEEEE----CCCCCHHHHHHHHHcCCCEe
Confidence 34467788999999999663 24567788888765 565432 34221123556667899999
Q ss_pred eccchHHHHH
Q 010948 308 AYPLSLIGVS 317 (497)
Q Consensus 308 syp~~ll~aa 317 (497)
..+...+.+.
T Consensus 188 ~iGt~f~~t~ 197 (307)
T TIGR03151 188 QMGTRFLCAK 197 (307)
T ss_pred ecchHHhccc
Confidence 9998665543
No 182
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=94.46 E-value=1.7 Score=40.91 Aligned_cols=132 Identities=23% Similarity=0.229 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHH
Q 010948 135 YGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (497)
Q Consensus 135 ldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAA 214 (497)
+.+++..++.+++..+.|++++- .++...+.|++|||+..... +.+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~l~i~~------------~~~la~~~g~~GvHl~~~~~-------------~~~~~------- 89 (196)
T TIGR00693 42 RLALAEKLQELCRRYGVPFIVND------------RVDLALALGADGVHLGQDDL-------------PASEA------- 89 (196)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEC------------HHHHHHHcCCCEEecCcccC-------------CHHHH-------
Confidence 34455666667777789998853 13455678999999965421 11111
Q ss_pred HHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEecc------------CCCHHHHHHHHHhCCCCCccc
Q 010948 215 VDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA------------LASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 215 v~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg------------~~s~eei~~i~~~v~~vP~~~ 282 (497)
+...+.+ .+++.+-. ..+|+ ....++|||.|++-. ....+.++++++..+.+|+
T Consensus 90 ---r~~~~~~-~~ig~s~h----~~~e~----~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv-- 155 (196)
T TIGR00693 90 ---RALLGPD-KIIGVSTH----NLEEL----AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPI-- 155 (196)
T ss_pred ---HHhcCCC-CEEEEeCC----CHHHH----HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCE--
Confidence 1111223 34444322 23333 345568999998521 1145788888776554453
Q ss_pred eeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 283 N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
+..||-++ -+..++.+.|+..|..+...+.
T Consensus 156 --~a~GGI~~-~~~~~~~~~G~~gva~~~~i~~ 185 (196)
T TIGR00693 156 --VAIGGITL-ENAAEVLAAGADGVAVVSAIMQ 185 (196)
T ss_pred --EEECCcCH-HHHHHHHHcCCCEEEEhHHhhC
Confidence 33345432 3567888899999998877664
No 183
>PRK12999 pyruvate carboxylase; Reviewed
Probab=94.43 E-value=1.5 Score=52.96 Aligned_cols=238 Identities=18% Similarity=0.178 Sum_probs=133.8
Q ss_pred HHHHHHh--CCcEEEecc-hhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCC--CCCC-HHHHHHH-HHHH
Q 010948 102 AKLVEKS--GFSFCFTSG-FSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMNVKRT-VKGY 174 (497)
Q Consensus 102 Ariae~a--GfdAI~vSG-~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~Dt--GYG~-~~~V~rt-Vk~l 174 (497)
|..++++ |+..+=++| ..+. +.+.+ .. -+--|.+..++.....+.+-.+.=+-+ ||.+ +.++.+. +++.
T Consensus 561 a~~l~~~~~g~~siE~~ggatfd-~~~r~--l~-e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a 636 (1146)
T PRK12999 561 APATARLLPNLFSLEMWGGATFD-VAYRF--LK-EDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREA 636 (1146)
T ss_pred HHHHHHHhCCCCEEEeeCCcchh-hhccc--cC-CCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHH
Confidence 4667788 999998884 3332 22222 22 222345555555444444555555555 5666 6666665 9999
Q ss_pred HHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCC-CeEEEEec----cch-hcccHHHHHHHHHH
Q 010948 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS-DIVIVART----DSR-QALSLEESLRRSRA 248 (497)
Q Consensus 175 ~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~-dfvIiART----DA~-~~~~ldeaIeRAkA 248 (497)
.+.|++-++|=|... . ++.++.+.++.++.|. -.+-+.=| |+. ..+.++-.++-++.
T Consensus 637 ~~~Gid~~rifd~ln-------------d----~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~ 699 (1146)
T PRK12999 637 AAAGIDVFRIFDSLN-------------W----VENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKE 699 (1146)
T ss_pred HHcCCCEEEEeccCC-------------h----HHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHH
Confidence 999999999988541 1 2334444444443342 12334445 443 23678888999999
Q ss_pred HHhcCCCEEEec---cCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCC---CHHHHHhcCCCEEeccchHH--HHHHH
Q 010948 249 FADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPIL---NPLELEELGFKLVAYPLSLI--GVSVR 319 (497)
Q Consensus 249 Y~eAGAD~IfIe---g~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~l---t~~eL~elGv~~Vsyp~~ll--~aa~~ 319 (497)
++++|||.|.+- |+-+++++.++.+.+.. +.+++.+=. --+..+ +.-.-.++|++.|-.....+ ++..-
T Consensus 700 l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~--Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~ 777 (1146)
T PRK12999 700 LEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHT--HDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQP 777 (1146)
T ss_pred HHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEe--CCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCH
Confidence 999999999885 45566777666654321 122333211 112223 33455678999987765544 34555
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccccc
Q 010948 320 AMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRR 367 (497)
Q Consensus 320 Am~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~~~~~ 367 (497)
+++..+..|+..+.. ....++.+.++-.| |.+....|.+-+..
T Consensus 778 ~le~vv~~L~~~~~~---t~idl~~l~~~s~~--~~~~r~~y~~~~~~ 820 (1146)
T PRK12999 778 SLNSIVAALEGTERD---TGLDLDAIRKLSPY--WEAVRPYYAPFESG 820 (1146)
T ss_pred HHHHHHHHHHhcCCC---CCcCHHHHHHHHHH--HHHHHhHhhccCCC
Confidence 666776667643222 12344444433322 44455556544433
No 184
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.42 E-value=1.5 Score=42.26 Aligned_cols=139 Identities=19% Similarity=0.160 Sum_probs=79.8
Q ss_pred eEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEecc
Q 010948 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD 232 (497)
Q Consensus 153 VIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTD 232 (497)
.+++.+.|..........+++.++.||+.|-+==....-++|+ .+++.+.|.+++++.. |..+.++--+.
T Consensus 57 ~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~--------~~~~~~ei~~v~~~~~--g~~lkvI~e~~ 126 (203)
T cd00959 57 TVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGD--------YEAVYEEIAAVVEACG--GAPLKVILETG 126 (203)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCC--------HHHHHHHHHHHHHhcC--CCeEEEEEecC
Confidence 4456666664455566668899999999997633221111221 2567778888888765 44555544433
Q ss_pred chhcccHHHHHHHHHHHHhcCCCEEEec-----cCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEE
Q 010948 233 SRQALSLEESLRRSRAFADAGADVLFID-----ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (497)
Q Consensus 233 A~~~~~ldeaIeRAkAY~eAGAD~IfIe-----g~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~V 307 (497)
.. ..++...-++...|+|||.|=.. .-.+.+.++.+.+.+. .+.+ +...||....-..-++-++|..|+
T Consensus 127 ~l---~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~-~~v~--ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 127 LL---TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG-GRVG--VKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred CC---CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CCce--EEEeCCCCCHHHHHHHHHhChhhc
Confidence 33 23555556788889999998664 2345677777776654 2322 222233211112345555565554
No 185
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.41 E-value=2 Score=43.89 Aligned_cols=148 Identities=14% Similarity=0.049 Sum_probs=80.8
Q ss_pred HHHHHHHHhCCcEEEecc---hhhhh----hhcccCCCCCCCHH----HHHHHHHHHHhhc--CcceEeeCCCCC----C
Q 010948 100 LSAKLVEKSGFSFCFTSG---FSISA----ARLALPDTGFISYG----EMVDQGQLITQAV--SIPVIGDGDNGY----G 162 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG---~avSa----s~lG~PD~g~ltld----Eml~~~r~I~ra~--~iPVIaD~DtGY----G 162 (497)
-.|+.++++|||+|-+-+ +-+.- ...-..|.-.=+++ .+++.++.|++++ ++||.+++.... |
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 467888899999997763 22110 00112221112333 2456677777776 689999887541 2
Q ss_pred -CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 163 -NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 163 -~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
+.....+.++.++++|++.|++-........ +.....-.+.....+-++.+++. .+.+++..++...
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~-~~~~~~~~~~~~~~~~~~~ir~~---~~iPVi~~Ggi~t-------- 292 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPP-PIIPPPYVPEGYFLELAEKIKKA---VKIPVIAVGGIRD-------- 292 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cccCCCCCCcchhHHHHHHHHHH---CCCCEEEeCCCCC--------
Confidence 3567888899999999999998665321100 00000000111122233333333 2345666665432
Q ss_pred HHHHHHHHHhc-CCCEEEec
Q 010948 242 SLRRSRAFADA-GADVLFID 260 (497)
Q Consensus 242 aIeRAkAY~eA-GAD~IfIe 260 (497)
.+.++.+.++ |||+|.+-
T Consensus 293 -~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 293 -PEVAEEILAEGKADLVALG 311 (327)
T ss_pred -HHHHHHHHHCCCCCeeeec
Confidence 2445556666 79999873
No 186
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.40 E-value=0.16 Score=50.95 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=66.4
Q ss_pred HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH
Q 010948 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (497)
Q Consensus 171 Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~ 250 (497)
++.++++|+.+|-+-|...--.+|+.+. ..++.+|++..+++++++.. ...|++=-|.-.....+++++-++.|.
T Consensus 25 A~i~e~aG~dai~v~~s~~a~~~G~pD~-~~vtl~em~~~~~~I~r~~~----~~pviaD~~~G~g~~~~~~~~~~~~l~ 99 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGMTVAGYDDT-LPYPVNDVPYHVRAVRRGAP----LALIVADLPFGAYGAPTAAFELAKTFM 99 (240)
T ss_pred HHHHHHcCCCEEEEChHHHHHhcCCCCC-CCcCHHHHHHHHHHHHhhCC----CCCEEEeCCCCCCcCHHHHHHHHHHHH
Confidence 4677789999999988654344566553 56899999999999987742 345666655533335588999999999
Q ss_pred hcCCCEEEeccC
Q 010948 251 DAGADVLFIDAL 262 (497)
Q Consensus 251 eAGAD~IfIeg~ 262 (497)
++||++|-||.-
T Consensus 100 ~aGa~gv~iED~ 111 (240)
T cd06556 100 RAGAAGVKIEGG 111 (240)
T ss_pred HcCCcEEEEcCc
Confidence 999999999984
No 187
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=94.33 E-value=2.5 Score=41.97 Aligned_cols=128 Identities=23% Similarity=0.318 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccH
Q 010948 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (497)
Q Consensus 160 GYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~l 239 (497)
|++++....+.++++.+.|..++||- +|. +.++-+++|++++++. |+++.| |-|+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~G~~~~KiK-------vg~-------~~~~d~~~v~~vr~~~---g~~~~l--~vDan~~~~~ 142 (265)
T cd03315 82 GLGEPAEVAEEARRALEAGFRTFKLK-------VGR-------DPARDVAVVAALREAV---GDDAEL--RVDANRGWTP 142 (265)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEe-------cCC-------CHHHHHHHHHHHHHhc---CCCCEE--EEeCCCCcCH
Confidence 44566777788888889999999993 221 1255678888887763 566655 7888877889
Q ss_pred HHHHHHHHHHHhcCCCEEEeccC-CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHh---c-CCCEEeccchHH
Q 010948 240 EESLRRSRAFADAGADVLFIDAL-ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEE---L-GFKLVAYPLSLI 314 (497)
Q Consensus 240 deaIeRAkAY~eAGAD~IfIeg~-~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~e---l-Gv~~Vsyp~~ll 314 (497)
+++++-++++.+.|.+.|=-|.. .+.+.++++.+.++ +|+.++ +. ..+..++.+ . ++..|..-+...
T Consensus 143 ~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~-ipia~d-----E~--~~~~~~~~~~i~~~~~d~v~~k~~~~ 214 (265)
T cd03315 143 KQAIRALRALEDLGLDYVEQPLPADDLEGRAALARATD-TPIMAD-----ES--AFTPHDAFRELALGAADAVNIKTAKT 214 (265)
T ss_pred HHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCC-CCEEEC-----CC--CCCHHHHHHHHHhCCCCEEEEecccc
Confidence 99999999999988665543332 24678888888765 565422 21 235544433 3 477776644433
No 188
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.26 E-value=0.28 Score=50.11 Aligned_cols=91 Identities=19% Similarity=0.145 Sum_probs=58.9
Q ss_pred HHHHHHHhC-CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc--CcceEe
Q 010948 79 KSLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIG 155 (497)
Q Consensus 79 ~~Lr~ll~~-~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~--~iPVIa 155 (497)
+.++++.+. +.++++-++...-.|+.++++|+++|.+++.+- . ..|.+..+++-+.+ +++.+ ++|||+
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG---~--~~~~g~~~~~~l~~----i~~~~~~~ipvia 232 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGG---R--QLDGAPATIDALPE----IVAAVGGRIEVLL 232 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCC---C--CCCCCcCHHHHHHH----HHHHhcCCCeEEE
Confidence 445555543 568888888889999999999999999986431 1 12444444443333 33333 499999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
|.. ..+...+. +.+ ..||++|.+
T Consensus 233 ~GG--I~~~~d~~---kal-~lGAd~V~i 255 (299)
T cd02809 233 DGG--IRRGTDVL---KAL-ALGADAVLI 255 (299)
T ss_pred eCC--CCCHHHHH---HHH-HcCCCEEEE
Confidence 843 33333333 444 589999988
No 189
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=94.20 E-value=1.5 Score=45.47 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCcEEEecc---hhhhhh----hcccCCCCCCCHH----HHHHHHHHHHhhc--CcceEeeCC------CC
Q 010948 100 LSAKLVEKSGFSFCFTSG---FSISAA----RLALPDTGFISYG----EMVDQGQLITQAV--SIPVIGDGD------NG 160 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG---~avSas----~lG~PD~g~ltld----Eml~~~r~I~ra~--~iPVIaD~D------tG 160 (497)
-.|+.+.++|||+|-+-+ +-++-. ..-.-|.-.-+++ .+++.++.|++++ +.||.+|+- .|
T Consensus 158 ~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g 237 (336)
T cd02932 158 AAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGG 237 (336)
T ss_pred HHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCC
Confidence 467888889999998762 211100 0112231112443 4566677777777 689999854 34
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEecC
Q 010948 161 YGNAMNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AGaAGI~IED 186 (497)
+ +...+.+.++.+++.|++-|++--
T Consensus 238 ~-~~~e~~~ia~~Le~~gvd~iev~~ 262 (336)
T cd02932 238 W-DLEDSVELAKALKELGVDLIDVSS 262 (336)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEECC
Confidence 4 356777888999999999998743
No 190
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=94.05 E-value=2.8 Score=47.24 Aligned_cols=234 Identities=18% Similarity=0.199 Sum_probs=126.9
Q ss_pred HHHHHHHHhCCcEEEecchhhhhhhcc--cCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCC--CCCC-HHH-HHHHHHH
Q 010948 100 LSAKLVEKSGFSFCFTSGFSISAARLA--LPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMN-VKRTVKG 173 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG~avSas~lG--~PD~g~ltldEml~~~r~I~ra~~iPVIaD~Dt--GYG~-~~~-V~rtVk~ 173 (497)
.-|..+.++||+.|=++|.+.-.+.+. .+| -.|.+..++.....+.+-.++-..+ ||-+ +.+ +..-+++
T Consensus 25 ~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~-----~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~ 99 (582)
T TIGR01108 25 PIAEKLDDVGYWSLEVWGGATFDACIRFLNED-----PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKK 99 (582)
T ss_pred HHHHHHHHcCCCEEEecCCcccccccccCCCC-----HHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHH
Confidence 345677889999998874322111111 122 2344444443222222333344554 6654 555 4556888
Q ss_pred HHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEE-EEeccchhcccHHHHHHHHHHHHhc
Q 010948 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDSRQALSLEESLRRSRAFADA 252 (497)
Q Consensus 174 l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvI-iARTDA~~~~~ldeaIeRAkAY~eA 252 (497)
..++|++-++|=|... . . .+++.+++..++.|..+.. +.-|++- ...++..++-++.+.++
T Consensus 100 a~~~Gvd~irif~~ln-----d--------~----~n~~~~i~~ak~~G~~v~~~i~~t~~p-~~~~~~~~~~~~~~~~~ 161 (582)
T TIGR01108 100 AVENGMDVFRIFDALN-----D--------P----RNLQAAIQAAKKHGAHAQGTISYTTSP-VHTLETYLDLAEELLEM 161 (582)
T ss_pred HHHCCCCEEEEEEecC-----c--------H----HHHHHHHHHHHHcCCEEEEEEEeccCC-CCCHHHHHHHHHHHHHc
Confidence 8999999999988642 1 1 3444444444443422111 1223321 24678889999999999
Q ss_pred CCCEEEec---cCCCHHHHHHHHHhCC-CCCccceeeecCCCCCCC---CHHHHHhcCCCEEeccchHH--HHHHHHHHH
Q 010948 253 GADVLFID---ALASKEEMKAFCEISP-LVPKMANMLEGGGKTPIL---NPLELEELGFKLVAYPLSLI--GVSVRAMQD 323 (497)
Q Consensus 253 GAD~IfIe---g~~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~l---t~~eL~elGv~~Vsyp~~ll--~aa~~Am~~ 323 (497)
|||.|.+- |+.++.++.++.+.+. .+|.++.+ .. .-+..+ +.-.--+.|+..|--....+ ++...++++
T Consensus 162 Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~-H~-Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~le~ 239 (582)
T TIGR01108 162 GVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHL-HS-HATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPPTET 239 (582)
T ss_pred CCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEE-Ee-cCCCCcHHHHHHHHHHhCCCEEEeccccccccccChhHHH
Confidence 99999885 4556777777665532 12333332 21 112233 23445577998886544433 445556666
Q ss_pred HHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcc
Q 010948 324 ALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYAT 363 (497)
Q Consensus 324 al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~ 363 (497)
.+..|+..+.. ..+.++.+.++- +.+.+..+.|..
T Consensus 240 vv~~L~~~g~~---tgid~~~L~~l~--~~~~~v~~~Y~~ 274 (582)
T TIGR01108 240 MVAALRGTGYD---TGLDIELLLEIA--AYFREVRKKYSQ 274 (582)
T ss_pred HHHHHHhcCCC---cccCHHHHHHHH--HHHHHHHHHhhc
Confidence 66666542222 123455555552 225556667765
No 191
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=93.93 E-value=1.4 Score=46.05 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhCccEEEecCCC-----------CCCCCCCCCCccccCHHHHHHH-HHHHHHHHHhcCCCeEEEEeccc
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQV-----------SPKGCGHTRGRKVVSREEAVMR-IKAAVDARKESGSDIVIVARTDS 233 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~-----------~pKrCGH~~gk~lvp~ee~~~K-IrAAv~Ar~~~g~dfvIiARTDA 233 (497)
...+++++..++|++||.|--.- .+||--.-+|- +...-.++.. |++++++ .|.++ |..|.-.
T Consensus 153 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGs-lenR~rf~~eii~air~~---vg~d~-v~vRis~ 227 (338)
T cd02933 153 DFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGS-IENRARFLLEVVDAVAEA---IGADR-VGIRLSP 227 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCc-HHHhhhHHHHHHHHHHHH---hCCCc-eEEEECc
Confidence 34566788889999999996432 23444333332 3322233333 3333333 25564 6777644
Q ss_pred h-------hcccHHHHHHHHHHHHhcCCCEEEe-ccC-------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHH
Q 010948 234 R-------QALSLEESLRRSRAFADAGADVLFI-DAL-------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE 298 (497)
Q Consensus 234 ~-------~~~~ldeaIeRAkAY~eAGAD~IfI-eg~-------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~e 298 (497)
. ....++|+++-++.++++|+|.|=+ .+. ...+.++++.+.++ +|++++ ++-+|. ..++
T Consensus 228 ~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~-ipvi~~----G~i~~~-~a~~ 301 (338)
T cd02933 228 FGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFK-GPLIAA----GGYDAE-SAEA 301 (338)
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcC-CCEEEE----CCCCHH-HHHH
Confidence 2 1236799999999999999999977 332 12345666666664 565433 232222 2233
Q ss_pred HHh-cCCCEEeccchHH
Q 010948 299 LEE-LGFKLVAYPLSLI 314 (497)
Q Consensus 299 L~e-lGv~~Vsyp~~ll 314 (497)
+-+ -++..|.++=.++
T Consensus 302 ~l~~g~~D~V~~gR~~l 318 (338)
T cd02933 302 ALADGKADLVAFGRPFI 318 (338)
T ss_pred HHHcCCCCEEEeCHhhh
Confidence 333 3478887765433
No 192
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=93.92 E-value=8.3 Score=39.31 Aligned_cols=177 Identities=16% Similarity=0.193 Sum_probs=99.8
Q ss_pred cccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEee-----CCCCCCCH--H
Q 010948 94 PACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD-----GDNGYGNA--M 165 (497)
Q Consensus 94 p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD-----~DtGYG~~--~ 165 (497)
.++.+.-+|..++++|++-|=+- .+. -+|+.|--.++..+ .+.+++||.+= .|+=|.+. .
T Consensus 6 vcv~s~~~a~~A~~~GAdRiELc~~L~---------~GGlTPS~g~i~~~---~~~~~ipv~vMIRPR~gdF~Ys~~E~~ 73 (248)
T PRK11572 6 ICCYSMECALTAQQAGADRIELCAAPK---------EGGLTPSLGVLKSV---RERVTIPVHPIIRPRGGDFCYSDGEFA 73 (248)
T ss_pred EEECCHHHHHHHHHcCCCEEEEccCcC---------CCCcCCCHHHHHHH---HHhcCCCeEEEEecCCCCCCCCHHHHH
Confidence 47889999999999999999544 322 22322222333333 34457887652 24446653 3
Q ss_pred HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEe-ccchhcccHHHHHH
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR-TDSRQALSLEESLR 244 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiAR-TDA~~~~~ldeaIe 244 (497)
...+.++.+.++|++||.+== . ...--++.+- ++..+++.. +-+ +..-| -|. ..+..++++
T Consensus 74 ~M~~di~~~~~~GadGvV~G~-L--------~~dg~vD~~~----~~~Li~~a~--~~~-vTFHRAfD~--~~d~~~al~ 135 (248)
T PRK11572 74 AMLEDIATVRELGFPGLVTGV-L--------DVDGHVDMPR----MRKIMAAAG--PLA-VTFHRAFDM--CANPLNALK 135 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEee-E--------CCCCCcCHHH----HHHHHHHhc--CCc-eEEechhhc--cCCHHHHHH
Confidence 566789999999999998821 1 1111244442 233333332 111 22223 121 123445555
Q ss_pred HHHHHHhcCCCEEEeccCC-----CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEe
Q 010948 245 RSRAFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVA 308 (497)
Q Consensus 245 RAkAY~eAGAD~IfIeg~~-----s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vs 308 (497)
. ..+.|.+-|+-.|-. ..+.++++.+...+ .. ++.++|-++ -+.++|.+.|++-+-
T Consensus 136 ~---l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~---~~-Im~GgGV~~-~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 136 Q---LADLGVARILTSGQQQDAEQGLSLIMELIAASDG---PI-IMAGAGVRL-SNLHKFLDAGVREVH 196 (248)
T ss_pred H---HHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCC---CE-EEeCCCCCH-HHHHHHHHcCCCEEe
Confidence 4 445699999977643 24566667665442 22 777766443 345677778877664
No 193
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=93.91 E-value=2.8 Score=41.42 Aligned_cols=171 Identities=18% Similarity=0.238 Sum_probs=99.7
Q ss_pred ChH-HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHH
Q 010948 98 DAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (497)
Q Consensus 98 Dal-SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~ 176 (497)
|+. .|+..++.|++-+++-=+.- . .|.+. ....++.|++.+.+||.++. |..+ .+.++++..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~--~-~~~~~--------n~~~i~~i~~~~~~~v~vgG--Gir~----~edv~~~l~ 98 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDA--I-MGRGD--------NDEAIRELAAAWPLGLWVDG--GIRS----LENAQEWLK 98 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCcc--c-cCCCc--------cHHHHHHHHHhCCCCEEEec--CcCC----HHHHHHHHH
Confidence 444 46777888999999984431 1 24433 35677888888899998874 4444 455678888
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh--------cccHHHHHHHHHH
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ--------ALSLEESLRRSRA 248 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~--------~~~ldeaIeRAkA 248 (497)
+||+-|.|--.. +.- +++.++ ....+.. -|+.--|... ...+.+.++ .
T Consensus 99 ~Ga~~viigt~~-------------~~~-~~~~~~------~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~---~ 154 (233)
T cd04723 99 RGASRVIVGTET-------------LPS-DDDEDR------LAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLR---R 154 (233)
T ss_pred cCCCeEEEccee-------------ccc-hHHHHH------HHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHH---H
Confidence 999888772211 111 222221 1112211 2222233321 123555544 4
Q ss_pred HHhcCCCEEEeccC--------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 249 FADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 249 Y~eAGAD~IfIeg~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
|.+. ++.+.+-.+ ++.+.++++++..+ +|. ..+||-...-++++|.++|+..|+.+..++.
T Consensus 155 ~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~~~~-ipv----i~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 155 LAKW-PEELIVLDIDRVGSGQGPDLELLERLAARAD-IPV----IAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred HHHh-CCeEEEEEcCccccCCCcCHHHHHHHHHhcC-CCE----EEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 5555 666655444 45678888888754 453 3344433223567788999999999886654
No 194
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=93.87 E-value=2.3 Score=41.40 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=90.1
Q ss_pred HHHHHHhhcCcceEeeCCCCCCCH-HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 141 QGQLITQAVSIPVIGDGDNGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtGYG~~-~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
.++.+.+. +.|+++|.=.+ +. ..+.+.++.+.++||+.+.+--.. | .+.|+++++..+
T Consensus 41 ~v~~l~~~-~~~v~lD~K~~--Dig~t~~~~~~~~~~~gad~vTvh~~~---------g---------~~~l~~~~~~~~ 99 (213)
T TIGR01740 41 IIDELAKL-NKLIFLDLKFA--DIPNTVKLQYESKIKQGADMVNVHGVA---------G---------SESVEAAKEAAS 99 (213)
T ss_pred HHHHHHHc-CCCEEEEEeec--chHHHHHHHHHHHHhcCCCEEEEcCCC---------C---------HHHHHHHHHHhh
Confidence 34444443 35888997654 32 346667777889999999884321 1 123555555544
Q ss_pred hcCCCeEEEEeccchhc----cc-HHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCC--
Q 010948 220 ESGSDIVIVARTDSRQA----LS-LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-- 292 (497)
Q Consensus 220 ~~g~dfvIiARTDA~~~----~~-ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP-- 292 (497)
+.|+..++++.+=+... .. .+..+++++.+.++|.+.+. .+.+++..+.+..+. ++-++. |-.+
T Consensus 100 ~~~~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v----~~~~~~~~ir~~~~~---~~~vtP--GI~~~g 170 (213)
T TIGR01740 100 EGGRGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPV----CSAEEAKEIRKFTGD---FLILTP--GIRLQS 170 (213)
T ss_pred cCCCeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEE----eCHHHHHHHHHhcCC---ceEEeC--CcCCCC
Confidence 44556677776544321 22 36888999999999999875 345677766655431 111221 2111
Q ss_pred --------CCCHHHHHhcCCCEEeccchHHH
Q 010948 293 --------ILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 293 --------~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
..++.++.+.|+..++.|..++.
T Consensus 171 ~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~ 201 (213)
T TIGR01740 171 KGADDQQRVVTLEDAKEAGADVIIVGRGIYA 201 (213)
T ss_pred CCcCCccccCCHHHHHHcCCCEEEEChhhcC
Confidence 13568999999999999877664
No 195
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.82 E-value=1.6 Score=45.43 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=84.7
Q ss_pred HHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCH-HHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhC
Q 010948 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISY-GEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltl-dEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG 178 (497)
--|+.++++|+|++=+--.+.. .-|+.-.... +.+.+.++.+++.+++||++=+--.+. ++...++.++++|
T Consensus 116 ~~a~~~~~~gad~iElN~s~~~----~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~---~~~~~a~~l~~~G 188 (325)
T cd04739 116 DYARQIEEAGADALELNIYALP----TDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFS---ALAHMAKQLDAAG 188 (325)
T ss_pred HHHHHHHhcCCCEEEEeCCCCC----CCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCcc---CHHHHHHHHHHcC
Confidence 3467778889999877621211 1122212223 334567788888889999998653333 4677778889999
Q ss_pred ccEEEecCCCC-CC---------CCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHH
Q 010948 179 FAGIILEDQVS-PK---------GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (497)
Q Consensus 179 aAGI~IEDq~~-pK---------rCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkA 248 (497)
|+||.+-.... +. .-+-..|..+.|.. .+-|+.+. +. .++-|+|=-.-. .-+++ ..
T Consensus 189 adgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~a--l~~v~~v~---~~--~~ipIig~GGI~---s~~Da----~e 254 (325)
T cd04739 189 ADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLP--LRWIAILS---GR--VKASLAASGGVH---DAEDV----VK 254 (325)
T ss_pred CCeEEEEcCcCCCCccccccceecCCCcCCccchhHH--HHHHHHHH---cc--cCCCEEEECCCC---CHHHH----HH
Confidence 99999977641 00 00112333333321 22233222 21 245555543332 22444 44
Q ss_pred HHhcCCCEEEeccC---CCHHHHHHHHHhC
Q 010948 249 FADAGADVLFIDAL---ASKEEMKAFCEIS 275 (497)
Q Consensus 249 Y~eAGAD~IfIeg~---~s~eei~~i~~~v 275 (497)
+..+|||+|-+=.. ...+.+.++.+++
T Consensus 255 ~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 255 YLLAGADVVMTTSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred HHHcCCCeeEEehhhhhcCchHHHHHHHHH
Confidence 55699999987421 1234555555543
No 196
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=93.73 E-value=6.2 Score=39.64 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=60.9
Q ss_pred HHHHHHhCCCcee--ecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC
Q 010948 80 SLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (497)
Q Consensus 80 ~Lr~ll~~~~~iv--~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~ 157 (497)
+|+++++++++++ .....++..+.++..+|||.+++=- . +|. .++.++...++.+ +..+..++|=.
T Consensus 2 ~lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iDl-E-----H~~-----~~~~~~~~~~~a~-~~~g~~~~VRv 69 (249)
T TIGR02311 2 QFKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLIDG-E-----HAP-----NDVRTILSQLQAL-APYPSSPVVRP 69 (249)
T ss_pred hHHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEec-c-----CCC-----CCHHHHHHHHHHH-HhcCCCcEEEC
Confidence 4888999998753 3466678888888899999999752 1 222 4777777766554 34455777776
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 158 DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
+.. ++. .+++...+|++||.+
T Consensus 70 ~~~--~~~----~i~~~Ld~Ga~gIiv 90 (249)
T TIGR02311 70 AIG--DPV----LIKQLLDIGAQTLLV 90 (249)
T ss_pred CCC--CHH----HHHHHhCCCCCEEEe
Confidence 554 222 567888999999987
No 197
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.71 E-value=0.9 Score=44.21 Aligned_cols=152 Identities=24% Similarity=0.328 Sum_probs=90.4
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccE
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAG 181 (497)
++.+.++|++.|=++ +|-...-+++.+ ..+........+...+. .....+.+.++.+.++|++.
T Consensus 20 ~~~L~~~Gv~~iEvg----------~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 20 AKALDEAGVDYIEVG----------FPFASEDDFEQV-RRLREALPNARLQALCR-----ANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp HHHHHHHTTSEEEEE----------HCTSSHHHHHHH-HHHHHHHHSSEEEEEEE-----SCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHhCCCEEEEc----------ccccCHHHHHHh-hhhhhhhcccccceeee-----ehHHHHHHHHHhhHhccCCE
Confidence 456778899998887 111111112222 22222222222222222 34566777788888999999
Q ss_pred EEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec-
Q 010948 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID- 260 (497)
Q Consensus 182 I~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe- 260 (497)
+.+-...++. |...+--.+.+++++++..+++..++.|.+..+. =+|+ .....++.++-+++..++|+|.|.+.
T Consensus 84 i~i~~~~s~~---~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~-~~~~-~~~~~~~~~~~~~~~~~~g~~~i~l~D 158 (237)
T PF00682_consen 84 IRIFISVSDL---HIRKNLNKSREEALERIEEAVKYAKELGYEVAFG-CEDA-SRTDPEELLELAEALAEAGADIIYLAD 158 (237)
T ss_dssp EEEEEETSHH---HHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEE-ETTT-GGSSHHHHHHHHHHHHHHT-SEEEEEE
T ss_pred EEecCcccHH---HHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeC-cccc-ccccHHHHHHHHHHHHHcCCeEEEeeC
Confidence 9998876431 1111222367888999988888877766444222 2343 23466888899999999999999885
Q ss_pred --cCCCHHHHHHHHHh
Q 010948 261 --ALASKEEMKAFCEI 274 (497)
Q Consensus 261 --g~~s~eei~~i~~~ 274 (497)
|.-+++++..+.+.
T Consensus 159 t~G~~~P~~v~~lv~~ 174 (237)
T PF00682_consen 159 TVGIMTPEDVAELVRA 174 (237)
T ss_dssp TTS-S-HHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHH
Confidence 44566666666643
No 198
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=93.70 E-value=2.4 Score=43.08 Aligned_cols=127 Identities=20% Similarity=0.224 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHh-CccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHH
Q 010948 162 GNAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE 240 (497)
Q Consensus 162 G~~~~V~rtVk~l~~A-GaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ld 240 (497)
-++..+.++++..-++ |-.=||||= |.+.+.|.| +.++.++|+..-.+ .+|.|.--|-..
T Consensus 73 ~tA~EAv~~A~laRe~~~t~wIKLEV--------i~D~~~L~P--D~~etl~Aae~Lv~---eGF~VlPY~~~D------ 133 (247)
T PF05690_consen 73 RTAEEAVRTARLAREAFGTNWIKLEV--------IGDDKTLLP--DPIETLKAAEILVK---EGFVVLPYCTDD------ 133 (247)
T ss_dssp SSHHHHHHHHHHHHHTTS-SEEEE----------BS-TTT--B---HHHHHHHHHHHHH---TT-EEEEEE-S-------
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEE--------eCCCCCcCC--ChhHHHHHHHHHHH---CCCEEeecCCCC------
Confidence 3567777777776664 688888885 334556766 34778888887765 479888765432
Q ss_pred HHHHHHHHHHhcCCCEEEecc--------CCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 010948 241 ESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 241 eaIeRAkAY~eAGAD~IfIeg--------~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
.--|++++++||-+|++.+ +.+..-++.++++++ +|+++. .|-.+| -...+-.|||+.-|..-..
T Consensus 134 --~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~-vPvIvD---AGiG~p-Sdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 134 --PVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERAD-VPVIVD---AGIGTP-SDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp --HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGS-SSBEEE---S---SH-HHHHHHHHTT-SEEEESHH
T ss_pred --HHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcC-CcEEEe---CCCCCH-HHHHHHHHcCCceeehhhH
Confidence 2459999999999999874 568899999999885 787543 322233 2457889999999998665
Q ss_pred HH
Q 010948 313 LI 314 (497)
Q Consensus 313 ll 314 (497)
..
T Consensus 207 iA 208 (247)
T PF05690_consen 207 IA 208 (247)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 199
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=93.69 E-value=1.3 Score=46.99 Aligned_cols=150 Identities=22% Similarity=0.222 Sum_probs=94.3
Q ss_pred cCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCC--CCCCCccccCHHHHHHHHHHHHHHHHhcCCCeE
Q 010948 149 VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGC--GHTRGRKVVSREEAVMRIKAAVDARKESGSDIV 226 (497)
Q Consensus 149 ~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrC--GH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfv 226 (497)
.+-|+|+= +|--++++..++++....-+ +||.|.-+-.+|.- ||. |--|..--|.+..|-.++.+. ++.+.-
T Consensus 72 ~D~PLIvQ--f~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~y-Ga~L~~~~eLv~e~V~~v~~~--l~~pVs 145 (358)
T KOG2335|consen 72 EDRPLIVQ--FGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGY-GAFLMDNPELVGEMVSAVRAN--LNVPVS 145 (358)
T ss_pred CCCceEEE--EcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCc-cceeccCHHHHHHHHHHHHhh--cCCCeE
Confidence 36899986 23225777777776655544 99999876533221 332 344555556666665555554 345544
Q ss_pred EEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCC-----------CHHHHHHHHHhCCCCCccceeeecCCCCCCCC
Q 010948 227 IVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA-----------SKEEMKAFCEISPLVPKMANMLEGGGKTPILN 295 (497)
Q Consensus 227 IiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~-----------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt 295 (497)
+--|+ ..+++++++-|+..++||++.+.|+|-+ +-+.++.+.+.+|.+|.++| |+-.-.-.
T Consensus 146 ~KIRI----~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaN----GnI~~~~d 217 (358)
T KOG2335|consen 146 VKIRI----FVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIAN----GNILSLED 217 (358)
T ss_pred EEEEe----cCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEee----CCcCcHHH
Confidence 44444 3578999999999999999999999742 45678888888887787776 33211112
Q ss_pred HHHHHh-cCCCEEeccch
Q 010948 296 PLELEE-LGFKLVAYPLS 312 (497)
Q Consensus 296 ~~eL~e-lGv~~Vsyp~~ 312 (497)
.+...+ -|+.-|-.+-.
T Consensus 218 ~~~~~~~tG~dGVM~arg 235 (358)
T KOG2335|consen 218 VERCLKYTGADGVMSARG 235 (358)
T ss_pred HHHHHHHhCCceEEecch
Confidence 333333 67776654433
No 200
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=93.68 E-value=0.68 Score=45.37 Aligned_cols=92 Identities=17% Similarity=0.113 Sum_probs=59.0
Q ss_pred cHHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhccc-CCCCCCCHHHHHHHHHHHHhhcCcceE
Q 010948 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLAL-PDTGFISYGEMVDQGQLITQAVSIPVI 154 (497)
Q Consensus 76 ~~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~-PD~g~ltldEml~~~r~I~ra~~iPVI 154 (497)
+-.+.+++.++.. .++|.-|.+.--|+.++++|||.|.++= .|| |++.. .+-=++.++++++. ++|||
T Consensus 80 ~l~~li~~i~~~~-~l~MADist~ee~~~A~~~G~D~I~TTL-------sGYT~~t~~--~~pD~~lv~~l~~~-~~pvI 148 (192)
T PF04131_consen 80 TLEELIREIKEKY-QLVMADISTLEEAINAAELGFDIIGTTL-------SGYTPYTKG--DGPDFELVRELVQA-DVPVI 148 (192)
T ss_dssp -HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHTT-SEEE-TT-------TTSSTTSTT--SSHHHHHHHHHHHT-TSEEE
T ss_pred CHHHHHHHHHHhC-cEEeeecCCHHHHHHHHHcCCCEEEccc-------ccCCCCCCC--CCCCHHHHHHHHhC-CCcEe
Confidence 4455666666666 8999999999999999999999999881 133 22222 22223445566664 89988
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 155 aD~DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
+. .+|.+++++. +..++||.+|.+
T Consensus 149 aE--Gri~tpe~a~----~al~~GA~aVVV 172 (192)
T PF04131_consen 149 AE--GRIHTPEQAA----KALELGAHAVVV 172 (192)
T ss_dssp EE--SS--SHHHHH----HHHHTT-SEEEE
T ss_pred ec--CCCCCHHHHH----HHHhcCCeEEEE
Confidence 75 4566776665 456799999988
No 201
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=93.62 E-value=0.26 Score=49.74 Aligned_cols=171 Identities=18% Similarity=0.203 Sum_probs=99.9
Q ss_pred ccccCCCCCccceeecceeeecccch--hhhhhcccCCCCcceeeccccCCCccccccCcHHHHHH--HHHhCCCceeec
Q 010948 19 LFHSNSRPSSFLGINNNTISFNKTNT--NTLLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLR--QILELPGVHQGP 94 (497)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~pr~~~~~R~y~rgs~~i~~a~~~a~~Lr--~ll~~~~~iv~p 94 (497)
+|-..-+|..+-+.+|-+=..+-... +..+...+-.-.|..+.=....-++.++ .-++++ +.|-+.+..++|
T Consensus 60 ~~l~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD----~~etl~Aae~Lv~eGF~VlP 135 (262)
T COG2022 60 GILDLLIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPD----PIETLKAAEQLVKEGFVVLP 135 (262)
T ss_pred hHHHHhhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCC----hHHHHHHHHHHHhCCCEEee
Confidence 44445567778888886644333322 2334555556677666433322222233 122222 334456688888
Q ss_pred -ccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHH
Q 010948 95 -ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKG 173 (497)
Q Consensus 95 -~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~ 173 (497)
+--|..-||-++++|+.+++=-+.-+- |-+|.-. .+..+.|....++|||||+ |-|.+.++. .
T Consensus 136 Y~~dD~v~arrLee~GcaavMPl~aPIG-Sg~G~~n---------~~~l~iiie~a~VPviVDA--GiG~pSdAa----~ 199 (262)
T COG2022 136 YTTDDPVLARRLEEAGCAAVMPLGAPIG-SGLGLQN---------PYNLEIIIEEADVPVIVDA--GIGTPSDAA----Q 199 (262)
T ss_pred ccCCCHHHHHHHHhcCceEecccccccc-CCcCcCC---------HHHHHHHHHhCCCCEEEeC--CCCChhHHH----H
Confidence 556889999999999998876555543 3344422 2344566666799999996 555665444 3
Q ss_pred HHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 174 l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
..|.|++||.+.--+. + . -++--|++-.+.|++|.+
T Consensus 200 aMElG~DaVL~NTAiA-----~-A----~DPv~MA~Af~~Av~AGr 235 (262)
T COG2022 200 AMELGADAVLLNTAIA-----R-A----KDPVAMARAFALAVEAGR 235 (262)
T ss_pred HHhcccceeehhhHhh-----c-c----CChHHHHHHHHHHHHHhH
Confidence 3478999998865431 0 1 122345666666666643
No 202
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.61 E-value=0.45 Score=51.56 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHH
Q 010948 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRA 246 (497)
+.+..+.|.+.+...+-+-|.. |+.- -+++.++..+.+.-....++. +..++|-|..... ++.++|+
T Consensus 163 l~eal~~m~~~~~~~lpVVDe~-----G~lv--GiVT~~DIl~~~~~~~~~~d~-~g~l~V~aav~~~-----~~~~~r~ 229 (450)
T TIGR01302 163 LEEALKVLHEHRIEKLPVVDKN-----GELV--GLITMKDIVKRRKFPHASKDE-NGRLIVGAAVGTR-----EFDKERA 229 (450)
T ss_pred HHHHHHHHHHcCCCeEEEEcCC-----CcEE--EEEEhHHhhhcccCCcceEeC-CCCEEEEEEecCc-----hhHHHHH
Confidence 5566677788787766665642 2222 267777776665321111111 2245555554432 5678999
Q ss_pred HHHHhcCCCEEEeccCC-----CHHHHHHHHHhCCCCCccc-eeeecCCCCCCCCHHHHHhcCCCEEecc
Q 010948 247 RAFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYP 310 (497)
Q Consensus 247 kAY~eAGAD~IfIeg~~-----s~eei~~i~~~v~~vP~~~-N~l~~~g~tP~lt~~eL~elGv~~Vsyp 310 (497)
+++.+||+|+|.|..-+ -.+.++++.+.+|.+|+++ |++- .-....|.++|+..|-.+
T Consensus 230 ~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t------~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 230 EALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVAT------AEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCC------HHHHHHHHHhCCCEEEEC
Confidence 99999999999997632 2356777777776666554 3221 124578999999999654
No 203
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.60 E-value=4.9 Score=41.95 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=90.7
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHH
Q 010948 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVK 172 (497)
Q Consensus 93 ~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk 172 (497)
|.++-|+-.|..+.++|-=.++... .+.++....++.+.. ++.+-.-.|. + .+....++
T Consensus 42 M~~vt~~~ma~ava~~GglGvi~~~---------------~~~~~~~~~i~~vk~----~l~v~~~~~~-~-~~~~~~~~ 100 (325)
T cd00381 42 MDTVTESEMAIAMARLGGIGVIHRN---------------MSIEEQAEEVRKVKG----RLLVGAAVGT-R-EDDKERAE 100 (325)
T ss_pred CCcCCcHHHHHHHHHCCCEEEEeCC---------------CCHHHHHHHHHHhcc----CceEEEecCC-C-hhHHHHHH
Confidence 3466677777767666532222211 234666555555532 2333333333 2 34556677
Q ss_pred HHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhc
Q 010948 173 GYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA 252 (497)
Q Consensus 173 ~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eA 252 (497)
.++++|+..|.|.=. .||. +...+.|+.++++ .++..|++=+- ...+.|+...++
T Consensus 101 ~l~eagv~~I~vd~~-----~G~~--------~~~~~~i~~ik~~----~p~v~Vi~G~v--------~t~~~A~~l~~a 155 (325)
T cd00381 101 ALVEAGVDVIVIDSA-----HGHS--------VYVIEMIKFIKKK----YPNVDVIAGNV--------VTAEAARDLIDA 155 (325)
T ss_pred HHHhcCCCEEEEECC-----CCCc--------HHHHHHHHHHHHH----CCCceEEECCC--------CCHHHHHHHHhc
Confidence 888899999988321 1332 2344455555544 34566665111 114678888899
Q ss_pred CCCEEEec---------------cCCCHHHHHHHHHhCC--CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 010948 253 GADVLFID---------------ALASKEEMKAFCEISP--LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (497)
Q Consensus 253 GAD~IfIe---------------g~~s~eei~~i~~~v~--~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~l 313 (497)
|||+|.+. +.++...+..+.+..+ .+|+ +..+|-...-.+...-++|..-|..|..+
T Consensus 156 GaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpV----IA~GGI~~~~di~kAla~GA~~VmiGt~f 229 (325)
T cd00381 156 GADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPV----IADGGIRTSGDIVKALAAGADAVMLGSLL 229 (325)
T ss_pred CCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcE----EecCCCCCHHHHHHHHHcCCCEEEecchh
Confidence 99999973 1122233333333322 2453 34344322234445556899988877643
No 204
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.53 E-value=3 Score=42.46 Aligned_cols=129 Identities=22% Similarity=0.238 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHHHHh-CccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEE-Eeccchhcc
Q 010948 160 GYGNAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV-ARTDSRQAL 237 (497)
Q Consensus 160 GYG~~~~V~rtVk~l~~A-GaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi-ARTDA~~~~ 237 (497)
|--++..+.++++..-++ |-.=||||=- .+.+.+.| +..+.|+|+..-.+ .+|.++ -=+|.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi--------~d~~~llp--d~~~tv~aa~~L~~---~Gf~vlpyc~~d---- 133 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVI--------GDDKTLLP--DPIETLKAAEILVK---EGFVVLPYCTDD---- 133 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEe--------cCCCCCCc--CHHHHHHHHHHHHH---CCCEEEEEeCCC----
Confidence 333566666776666553 5688888852 22223333 34566777766654 478888 44554
Q ss_pred cHHHHHHHHHHHHhcCCCEEEec--------cCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEec
Q 010948 238 SLEESLRRSRAFADAGADVLFID--------ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (497)
Q Consensus 238 ~ldeaIeRAkAY~eAGAD~IfIe--------g~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsy 309 (497)
+.-|++++++|+++|.+. ++.+.+.++.+.+.. .+|++ .+++-.+| -...+..++|+.-|..
T Consensus 134 -----~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~-~vpVI---veaGI~tp-eda~~AmelGAdgVlV 203 (250)
T PRK00208 134 -----PVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQA-DVPVI---VDAGIGTP-SDAAQAMELGADAVLL 203 (250)
T ss_pred -----HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhc-CCeEE---EeCCCCCH-HHHHHHHHcCCCEEEE
Confidence 467999999999999662 345678888888874 46643 33322333 2456777899999999
Q ss_pred cchHHH
Q 010948 310 PLSLIG 315 (497)
Q Consensus 310 p~~ll~ 315 (497)
+....+
T Consensus 204 ~SAItk 209 (250)
T PRK00208 204 NTAIAV 209 (250)
T ss_pred ChHhhC
Confidence 888765
No 205
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=93.53 E-value=1.5 Score=45.25 Aligned_cols=114 Identities=19% Similarity=0.334 Sum_probs=75.6
Q ss_pred CcceEeeCCCCCC--CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEE
Q 010948 150 SIPVIGDGDNGYG--NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (497)
Q Consensus 150 ~iPVIaD~DtGYG--~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvI 227 (497)
.+|+.+= .|++ .+..+.+.++++.+.|..+++|- +||..... -..+..+++|++++++. |+++.|
T Consensus 126 ~v~~~~~--~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik-------~g~~~~~~-~~~~~d~~~v~~ir~~~---g~~~~l 192 (357)
T cd03316 126 RVRVYAS--GGGYDDSPEELAEEAKRAVAEGFTAVKLK-------VGGPDSGG-EDLREDLARVRAVREAV---GPDVDL 192 (357)
T ss_pred ceeeEEe--cCCCCCCHHHHHHHHHHHHHcCCCEEEEc-------CCCCCcch-HHHHHHHHHHHHHHHhh---CCCCEE
Confidence 3555432 3444 46778888899999999999992 34421000 01345577788777664 567766
Q ss_pred EEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhCCCCCcc
Q 010948 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 228 iARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v~~vP~~ 281 (497)
.. |+.....++++++-++++.+.|. .|+|-+ .+.+.++++.+..+ +|+.
T Consensus 193 ~v--DaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~~~~~-ipi~ 244 (357)
T cd03316 193 MV--DANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDLEGLARLRQATS-VPIA 244 (357)
T ss_pred EE--ECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCHHHHHHHHHhCC-CCEE
Confidence 43 77777789999999999988764 466654 24677888888764 5643
No 206
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=93.50 E-value=1.2 Score=45.33 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=82.1
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhccc-CCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCC-HHHHHHHHHHHHHhC
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLAL-PDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN-AMNVKRTVKGYIKAG 178 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~-PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~-~~~V~rtVk~l~~AG 178 (497)
-|+.+++.|+|++++.=+.- ..| ++.+..|..-|...++++.+.+++|+=++.=.-=+- +..++ ..+|
T Consensus 33 ea~~l~~~GvD~viveN~~d----~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA------~a~g 102 (257)
T TIGR00259 33 DAMALEEGGVDAVMFENFFD----APFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIA------MAVG 102 (257)
T ss_pred HHHHHHhCCCCEEEEecCCC----CCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHH------HHhC
Confidence 36788899999999974331 122 134455566677777788888888843322211010 12222 2345
Q ss_pred ccEEEecCCCCCCCCCCCCC-cccc-CH-HHHHHHHHHHHHHHHhcCCCeEEEEeccch-----hcccHHHHHHHHHHHH
Q 010948 179 FAGIILEDQVSPKGCGHTRG-RKVV-SR-EEAVMRIKAAVDARKESGSDIVIVARTDSR-----QALSLEESLRRSRAFA 250 (497)
Q Consensus 179 aAGI~IEDq~~pKrCGH~~g-k~lv-p~-ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~-----~~~~ldeaIeRAkAY~ 250 (497)
++=|..|-- ||+... .-++ +. .|. -|. |+.++.+..|.|-.... ...+++|+.+.+. .
T Consensus 103 a~FIRv~~~-----~g~~~~d~G~~~~~a~e~-~r~------r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~--~ 168 (257)
T TIGR00259 103 AKFIRVNVL-----TGVYASDQGIIEGNAGEL-IRY------KKLLGSEVKILADIVVKHAVHLGNRDLESIALDTV--E 168 (257)
T ss_pred CCEEEEccE-----eeeEecccccccccHHHH-HHH------HHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHH--H
Confidence 555554421 222110 0011 11 111 122 33345566666543331 2235666655433 2
Q ss_pred hcCCCEEEeccC-----CCHHHHHHHHHhCCCCCcc
Q 010948 251 DAGADVLFIDAL-----ASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 251 eAGAD~IfIeg~-----~s~eei~~i~~~v~~vP~~ 281 (497)
..+||+|++-|. .+.++++++.+..+.+|.+
T Consensus 169 ~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvl 204 (257)
T TIGR00259 169 RGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVL 204 (257)
T ss_pred hcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEE
Confidence 234999999875 4577888887766556654
No 207
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.49 E-value=2.4 Score=44.43 Aligned_cols=155 Identities=26% Similarity=0.302 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhCccEEEecCCC-----------CCCCCCCCCCccccCHHHHH-HHHHHHHHHHH-hcCCCeEEEEeccc
Q 010948 167 VKRTVKGYIKAGFAGIILEDQV-----------SPKGCGHTRGRKVVSREEAV-MRIKAAVDARK-ESGSDIVIVARTDS 233 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~-----------~pKrCGH~~gk~lvp~ee~~-~KIrAAv~Ar~-~~g~dfvIiARTDA 233 (497)
..+++++..++|++||.|--.- ..||...-+|. +...-.++ +-|++++++.. .++++|.|--|-..
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGs-lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~ 224 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGS-LENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP 224 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCc-HHHHHHHHHHHHHHHHHHhccccCCCceEEEEECc
Confidence 4456677788999999886421 23444433442 32222222 23333333321 01168888888654
Q ss_pred h----hcccHHHHHHHHHHHHhcCCCEEEeccC---------C--CHHHHHHHHHhCC-CCCccceeeecCCC-CCCCCH
Q 010948 234 R----QALSLEESLRRSRAFADAGADVLFIDAL---------A--SKEEMKAFCEISP-LVPKMANMLEGGGK-TPILNP 296 (497)
Q Consensus 234 ~----~~~~ldeaIeRAkAY~eAGAD~IfIeg~---------~--s~eei~~i~~~v~-~vP~~~N~l~~~g~-tP~lt~ 296 (497)
. ....++|.++-++.++++|+|.|=+.+- . ..+.++.+.+.+. .+|+++| ++- +|.. .
T Consensus 225 ~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~----Ggi~t~e~-a 299 (353)
T cd04735 225 EEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAV----GSINTPDD-A 299 (353)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEE----CCCCCHHH-H
Confidence 2 1235799999999999999999977431 0 1234455555552 3565533 232 2322 3
Q ss_pred HHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 010948 297 LELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (497)
Q Consensus 297 ~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~~g~ 332 (497)
+++-+.|+..|.++-.++.- -+....+++|.
T Consensus 300 e~~l~~gaD~V~~gR~liad-----Pdl~~k~~~G~ 330 (353)
T cd04735 300 LEALETGADLVAIGRGLLVD-----PDWVEKIKEGR 330 (353)
T ss_pred HHHHHcCCChHHHhHHHHhC-----ccHHHHHHcCC
Confidence 44444488777665443321 34455566664
No 208
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.48 E-value=0.5 Score=49.22 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=58.4
Q ss_pred HHHHHHHhCC--CceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe
Q 010948 79 KSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (497)
Q Consensus 79 ~~Lr~ll~~~--~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa 155 (497)
+.++++.+.. -++++.++-+.-.|+.+.++|+|+|.++ |-+..+........+ .+.-..+..+...++..++|||+
T Consensus 124 ~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g-~p~~~~i~~v~~~~~~~~vpVIA 202 (325)
T cd00381 124 EMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVG-VPQATAVADVAAAARDYGVPVIA 202 (325)
T ss_pred HHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCC-CCHHHHHHHHHHHHhhcCCcEEe
Confidence 3444544433 3455678999999999999999999985 211111111111222 22223444455555666899997
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
| .|..+...+. +. .++||++|.+
T Consensus 203 ~--GGI~~~~di~---kA-la~GA~~Vmi 225 (325)
T cd00381 203 D--GGIRTSGDIV---KA-LAAGADAVML 225 (325)
T ss_pred c--CCCCCHHHHH---HH-HHcCCCEEEe
Confidence 7 3444554444 33 3589999998
No 209
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.44 E-value=3.3 Score=41.00 Aligned_cols=131 Identities=16% Similarity=0.242 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHH
Q 010948 136 GEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (497)
Q Consensus 136 dEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv 215 (497)
.++...++.+++..++|+|++-+ +....+.|++||||-... .+..
T Consensus 57 ~~~a~~l~~l~~~~gv~liINd~------------~dlA~~~~adGVHLg~~d-------------~~~~---------- 101 (221)
T PRK06512 57 QKQAEKLVPVIQEAGAAALIAGD------------SRIAGRVKADGLHIEGNL-------------AALA---------- 101 (221)
T ss_pred HHHHHHHHHHHHHhCCEEEEeCH------------HHHHHHhCCCEEEECccc-------------cCHH----------
Confidence 34455556666777899999721 334456899999995321 1111
Q ss_pred HHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC----------CCHHHHHHHHHhCCCCCccceee
Q 010948 216 DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL----------ASKEEMKAFCEISPLVPKMANML 285 (497)
Q Consensus 216 ~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~----------~s~eei~~i~~~v~~vP~~~N~l 285 (497)
++++.++++ .+++-+-.. ..+++.+ ..+.|||.|.+-.+ ...+.++++++.+. +|+. .+
T Consensus 102 ~~r~~~~~~-~iiG~s~~~---s~~~a~~----A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~-iPvv--AI 170 (221)
T PRK06512 102 EAIEKHAPK-MIVGFGNLR---DRHGAME----IGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIE-IPCI--VQ 170 (221)
T ss_pred HHHHhcCCC-CEEEecCCC---CHHHHHH----hhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCC-CCEE--EE
Confidence 222223444 456654211 2233332 34799999987332 12456667777654 5643 22
Q ss_pred ecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 286 EGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 286 ~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
||-++ -+..++.+.|...|..-..+++
T Consensus 171 --GGI~~-~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 171 --AGSDL-ASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred --eCCCH-HHHHHHHHhCCCEEEEhHHhhC
Confidence 34322 3567888999988877555543
No 210
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=93.42 E-value=4.9 Score=43.24 Aligned_cols=120 Identities=11% Similarity=0.186 Sum_probs=75.9
Q ss_pred cccCCCCCC---CHHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCC-c
Q 010948 125 LALPDTGFI---SYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRG-R 199 (497)
Q Consensus 125 lG~PD~g~l---tldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~g-k 199 (497)
.|++..+++ +++.++++.+++.+.. ++||||-+=.++ ++....+.+++++++||++|-|-=. |.|..+ +
T Consensus 84 iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~-s~~~~~~~a~~~e~~GaD~iELNiS-----CPn~~~~r 157 (385)
T PLN02495 84 IGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEY-NKDAWEEIIERVEETGVDALEINFS-----CPHGMPER 157 (385)
T ss_pred ccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCC-CHHHHHHHHHHHHhcCCCEEEEECC-----CCCCCCcC
Confidence 577776554 5899999988876666 689999975544 4667888889999999999977442 656421 1
Q ss_pred ----c-ccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEe
Q 010948 200 ----K-VVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (497)
Q Consensus 200 ----~-lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfI 259 (497)
. .... |.+.+|-.++.... +.-|+.+--. .+++...-+++..++|||+|.+
T Consensus 158 ~~g~~~gq~~-e~~~~i~~~Vk~~~----~iPv~vKLsP----n~t~i~~ia~aa~~~Gadgi~l 213 (385)
T PLN02495 158 KMGAAVGQDC-DLLEEVCGWINAKA----TVPVWAKMTP----NITDITQPARVALKSGCEGVAA 213 (385)
T ss_pred ccchhhccCH-HHHHHHHHHHHHhh----cCceEEEeCC----ChhhHHHHHHHHHHhCCCEEEE
Confidence 1 1223 44444433332221 2223333221 2345566788888999999875
No 211
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.37 E-value=4.3 Score=40.36 Aligned_cols=143 Identities=14% Similarity=0.142 Sum_probs=82.6
Q ss_pred HHHHHHHhhcCcceEeeCCCCCCCH--HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHH
Q 010948 140 DQGQLITQAVSIPVIGDGDNGYGNA--MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (497)
Q Consensus 140 ~~~r~I~ra~~iPVIaD~DtGYG~~--~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~A 217 (497)
+.++.+++.+++|++. .+|-++ .+..+.++.+.++|++||.|=|-. +-..++..+-++.+
T Consensus 64 ~~v~~vr~~~~~Pl~l---M~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp------------~e~~~~~~~~~~~~--- 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIIL---MTYLEDYVDSLDNFLNMARDVGADGVLFPDLL------------IDYPDDLEKYVEII--- 125 (244)
T ss_pred HHHHHHhccCCCCEEE---EEecchhhhCHHHHHHHHHHcCCCEEEECCCC------------CCcHHHHHHHHHHH---
Confidence 5677777778899731 134443 356677889999999999996531 00012222222222
Q ss_pred HHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCC---------C-HHHHHHHHHhCCCCCccceeeec
Q 010948 218 RKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA---------S-KEEMKAFCEISPLVPKMANMLEG 287 (497)
Q Consensus 218 r~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~---------s-~eei~~i~~~v~~vP~~~N~l~~ 287 (497)
++.|....+......- ++|.+.+.+.....+++ ++. + .+-++++.+..+..| +..+
T Consensus 126 -~~~Gl~~~~~v~p~T~--------~e~l~~~~~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~----i~v~ 191 (244)
T PRK13125 126 -KNKGLKPVFFTSPKFP--------DLLIHRLSKLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKY----LVVG 191 (244)
T ss_pred -HHcCCCEEEEECCCCC--------HHHHHHHHHhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCC----EEEe
Confidence 2335555555443321 46778888887777765 431 1 123444444433233 2223
Q ss_pred CCC-CCCCCHHHHHhcCCCEEeccchHHH
Q 010948 288 GGK-TPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 288 ~g~-tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
+|- ++ -+..++.+.|+..++.|..+++
T Consensus 192 gGI~~~-e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 192 FGLDSP-EDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCcCCH-HHHHHHHHcCCCEEEECHHHHH
Confidence 343 32 2567778899999999998876
No 212
>PRK14017 galactonate dehydratase; Provisional
Probab=93.35 E-value=1.9 Score=45.55 Aligned_cols=133 Identities=16% Similarity=0.254 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccH
Q 010948 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (497)
Q Consensus 160 GYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~l 239 (497)
|.++++.+.+.++++.+.|...+|+--. +|.+- .++ -.+.++-+++|++++++. |+++.| |.|+....+.
T Consensus 121 ~~~~~~~~~~~a~~~~~~Gf~~~KiKv~--~~~~~-~~~--~~~~~~d~~~i~avr~~~---g~~~~l--~vDaN~~w~~ 190 (382)
T PRK14017 121 GGDRPADVAEAARARVERGFTAVKMNGT--EELQY-IDS--PRKVDAAVARVAAVREAV---GPEIGI--GVDFHGRVHK 190 (382)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCc--CCccc-ccc--HHHHHHHHHHHHHHHHHh---CCCCeE--EEECCCCCCH
Confidence 3346777778888888899999999421 11110 000 012344577888877664 667765 6788888899
Q ss_pred HHHHHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHH---HhcC-CCEEeccch
Q 010948 240 EESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLEL---EELG-FKLVAYPLS 312 (497)
Q Consensus 240 deaIeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL---~elG-v~~Vsyp~~ 312 (497)
++|++.++++.+.|. .|+|-+ .+.+.++++.+..+ +|..+. .. ..+..++ -+.| ++.+..-..
T Consensus 191 ~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~L~~~~~-~pIa~d-----Es--~~~~~~~~~li~~~a~d~v~~d~~ 260 (382)
T PRK14017 191 PMAKVLAKELEPYRP--MFIEEPVLPENAEALPEIAAQTS-IPIATG-----ER--LFSRWDFKRVLEAGGVDIIQPDLS 260 (382)
T ss_pred HHHHHHHHhhcccCC--CeEECCCCcCCHHHHHHHHhcCC-CCEEeC-----Cc--cCCHHHHHHHHHcCCCCeEecCcc
Confidence 999999999998764 477765 35678888888765 564421 11 2354444 4444 666655433
No 213
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=93.34 E-value=7.2 Score=38.83 Aligned_cols=175 Identities=20% Similarity=0.254 Sum_probs=100.8
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCC------------CCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHH---H
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTG------------FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM---N 166 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g------------~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~---~ 166 (497)
++.++++|+|++=++ .-. +-.+-|+. .++++..++.++.+.+.+++|++. .+|-|+. .
T Consensus 20 ~~~l~~~Gad~iel~-iPf---sdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~l---m~y~n~~~~~G 92 (242)
T cd04724 20 LKALVEAGADIIELG-IPF---SDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVL---MGYYNPILQYG 92 (242)
T ss_pred HHHHHHCCCCEEEEC-CCC---CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEE---EEecCHHHHhC
Confidence 456777899888877 111 01222322 244667888899998877889654 2455541 1
Q ss_pred HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEE-EEeccchhcccHHHHHHH
Q 010948 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDSRQALSLEESLRR 245 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvI-iARTDA~~~~~ldeaIeR 245 (497)
+.+-++.+.++|++||.+=|- |.||...-++.+++. |.+.++ ++-+-. .+|
T Consensus 93 ~~~fi~~~~~aG~~giiipDl---------------~~ee~~~~~~~~~~~----g~~~i~~i~P~T~---------~~~ 144 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDL---------------PPEEAEEFREAAKEY----GLDLIFLVAPTTP---------DER 144 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCC---------------CHHHHHHHHHHHHHc----CCcEEEEeCCCCC---------HHH
Confidence 466789999999999999773 234433333333332 444433 332211 367
Q ss_pred HHHHHhcCCCEEEecc---C---CC------HHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 010948 246 SRAFADAGADVLFIDA---L---AS------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (497)
Q Consensus 246 AkAY~eAGAD~IfIeg---~---~s------~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~l 313 (497)
.+.+.+...+.|++-+ . .+ .+.++++.+. ..+|.. +. +|-...-+.+++.+. +..++.|+.+
T Consensus 145 i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~---vg-gGI~~~e~~~~~~~~-ADgvVvGSai 218 (242)
T cd04724 145 IKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIA---VG-FGISTPEQAAEVAKY-ADGVIVGSAL 218 (242)
T ss_pred HHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEE---EE-ccCCCHHHHHHHHcc-CCEEEECHHH
Confidence 7777776667766532 1 11 1334444443 234443 23 343222256788888 9999999877
Q ss_pred HHHH
Q 010948 314 IGVS 317 (497)
Q Consensus 314 l~aa 317 (497)
++..
T Consensus 219 v~~~ 222 (242)
T cd04724 219 VKII 222 (242)
T ss_pred HHHH
Confidence 6543
No 214
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.31 E-value=1.2 Score=44.22 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHH
Q 010948 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (497)
Q Consensus 134 tldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrA 213 (497)
..+.+.+.++.|.+ +++||++=+-.|+- .+..+.++.++++|+++||+... .+ | ..++. +.|+.
T Consensus 124 ~p~~l~eiv~avr~-~~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~~~-~~---g-----~~ad~----~~I~~ 187 (233)
T cd02911 124 DPERLSEFIKALKE-TGVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVDAM-DP---G-----NHADL----KKIRD 187 (233)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEECcC-CC---C-----CCCcH----HHHHH
Confidence 34666667777765 58999999988874 45667788999999999999432 11 1 01122 23333
Q ss_pred HHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 214 Av~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
++ .+..|++--+-.. .+.++.+.+.|||+|++-
T Consensus 188 i~-------~~ipVIgnGgI~s-------~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 188 IS-------TELFIIGNNSVTT-------IESAKEMFSYGADMVSVA 220 (233)
T ss_pred hc-------CCCEEEEECCcCC-------HHHHHHHHHcCCCEEEEc
Confidence 22 1344555444332 355666777899999983
No 215
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.26 E-value=1.2 Score=45.51 Aligned_cols=149 Identities=11% Similarity=0.004 Sum_probs=87.5
Q ss_pred CCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHh--CccEEEec
Q 010948 109 GFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA--GFAGIILE 185 (497)
Q Consensus 109 GfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~A--GaAGI~IE 185 (497)
|+|++=+- |.-.. -|..+. ....+.+.+.++.+.+.+++||++=+--++ +..++.+.++.+.++ |++||.+=
T Consensus 119 ~ad~ielN~sCPn~---~~~~~~-~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~-~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 119 FPLAMELNLSCPNV---PGKPPP-AYDFDATLEYLTAVKAAYSIPVGVKTPPYT-DPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred cccEEEEECCCCCC---CCcccc-cCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CHHHHHHHHHHHhccccCCcEEEEE
Confidence 67877765 32221 133222 235677888888888888999999997765 556678888888888 99999853
Q ss_pred CCC-----------CCC---CCCC--CCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHH
Q 010948 186 DQV-----------SPK---GCGH--TRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (497)
Q Consensus 186 Dq~-----------~pK---rCGH--~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY 249 (497)
... .|. ..++ ..|+.+-|. .++.|+.++++ .+.++-|+|-.+-... +.+..|
T Consensus 194 Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~--al~~v~~~~~~---~~~~ipIig~GGI~s~-------~da~e~ 261 (294)
T cd04741 194 NTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPL--ALGNVRTFRRL---LPSEIQIIGVGGVLDG-------RGAFRM 261 (294)
T ss_pred ccCCccccccCCCCCcccCCCCCCCCcCchhhHHH--HHHHHHHHHHh---cCCCCCEEEeCCCCCH-------HHHHHH
Confidence 221 111 1211 233444333 23444443333 3335778877666432 445556
Q ss_pred HhcCCCEEEecc--C-CCHHHHHHHHHh
Q 010948 250 ADAGADVLFIDA--L-ASKEEMKAFCEI 274 (497)
Q Consensus 250 ~eAGAD~IfIeg--~-~s~eei~~i~~~ 274 (497)
..||||+|.+=. + .....++++.+.
T Consensus 262 l~aGA~~Vqv~ta~~~~gp~~~~~i~~~ 289 (294)
T cd04741 262 RLAGASAVQVGTALGKEGPKVFARIEKE 289 (294)
T ss_pred HHcCCCceeEchhhhhcCchHHHHHHHH
Confidence 679999998732 1 244555555544
No 216
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.25 E-value=4.6 Score=42.35 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCccEEEecCCC--------C---CCCCCCCCCccccCHHHHHHH-HHHHHHHHHhcCCCeEEEEeccch
Q 010948 167 VKRTVKGYIKAGFAGIILEDQV--------S---PKGCGHTRGRKVVSREEAVMR-IKAAVDARKESGSDIVIVARTDSR 234 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~--------~---pKrCGH~~gk~lvp~ee~~~K-IrAAv~Ar~~~g~dfvIiARTDA~ 234 (497)
..+++++..++|++||.|--.- + .||...-+|. +...-.++.. |++++++. +|.|..|.-..
T Consensus 144 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~~-----~~~v~vRis~~ 217 (337)
T PRK13523 144 FKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGS-PENRYRFLREIIDAVKEVW-----DGPLFVRISAS 217 (337)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCC-HHHHHHHHHHHHHHHHHhc-----CCCeEEEeccc
Confidence 3455677788999999986552 1 2454444442 3323233322 33333331 45555565431
Q ss_pred ----hcccHHHHHHHHHHHHhcCCCEEEecc
Q 010948 235 ----QALSLEESLRRSRAFADAGADVLFIDA 261 (497)
Q Consensus 235 ----~~~~ldeaIeRAkAY~eAGAD~IfIeg 261 (497)
....++|+++-++.++++|+|.|-+.+
T Consensus 218 d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 218 DYHPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 123589999999999999999998754
No 217
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=93.24 E-value=8.4 Score=40.95 Aligned_cols=157 Identities=13% Similarity=0.036 Sum_probs=97.5
Q ss_pred HHHHHHHHhCCC--ceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHh---hcCcc
Q 010948 78 AKSLRQILELPG--VHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIP 152 (497)
Q Consensus 78 a~~Lr~ll~~~~--~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~r---a~~iP 152 (497)
.+.++.+.+.+. .+.+++-...-....+.++|++.+.+.- .+|-.. ....-..|.+|+++.+....+ ..+..
T Consensus 55 ~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~-~~Sd~h--~~~~~~~s~~~~l~~~~~~v~~a~~~G~~ 131 (378)
T PRK11858 55 KEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFI-ATSDIH--IKHKLKKTREEVLERMVEAVEYAKDHGLY 131 (378)
T ss_pred HHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEE-cCCHHH--HHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 356666665432 2344443334445666678999877762 111000 111123678888887666544 34678
Q ss_pred eEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 010948 153 VIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVART 231 (497)
Q Consensus 153 VIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiART 231 (497)
|.+.+++++- ++..+.+.++.+.++|+..|.|-|.. | ...++++.+.|+++++.. +.++-+=...
T Consensus 132 v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~-----G------~~~P~~v~~lv~~l~~~~---~~~l~~H~Hn 197 (378)
T PRK11858 132 VSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV-----G------ILDPFTMYELVKELVEAV---DIPIEVHCHN 197 (378)
T ss_pred EEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-----C------CCCHHHHHHHHHHHHHhc---CCeEEEEecC
Confidence 8888877654 67889999999999999999999975 3 334566777777766542 2233333333
Q ss_pred cchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 232 DSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 232 DA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
| +--|+.-+.+..+|||+.|
T Consensus 198 d------~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 198 D------FGMATANALAGIEAGAKQV 217 (378)
T ss_pred C------cCHHHHHHHHHHHcCCCEE
Confidence 2 3345666777788999976
No 218
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.24 E-value=2.8 Score=43.55 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHH-HHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhC
Q 010948 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYG-EMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltld-Eml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG 178 (497)
--|+.++++|++++-+--.+. .+.++....... .+.+.++.|++.+++||++=+--++. ++...++.++++|
T Consensus 118 ~~a~~~~~agad~ielN~scp----p~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~---~~~~~a~~l~~~G 190 (334)
T PRK07565 118 DYARQIEQAGADALELNIYYL----PTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFS---NLANMAKRLDAAG 190 (334)
T ss_pred HHHHHHHHcCCCEEEEeCCCC----CCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCch---hHHHHHHHHHHcC
Confidence 445677888999998752110 122222122233 35677788888889999998643332 4667778889999
Q ss_pred ccEEEecCC
Q 010948 179 FAGIILEDQ 187 (497)
Q Consensus 179 aAGI~IEDq 187 (497)
++||.+-..
T Consensus 191 ~dgI~~~n~ 199 (334)
T PRK07565 191 ADGLVLFNR 199 (334)
T ss_pred CCeEEEECC
Confidence 999988554
No 219
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.23 E-value=0.93 Score=47.44 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=79.4
Q ss_pred HHHHHHHhC--CcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-----cceEeeCCCCCCCHHHHHHHHH
Q 010948 101 SAKLVEKSG--FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-----IPVIGDGDNGYGNAMNVKRTVK 172 (497)
Q Consensus 101 SAriae~aG--fdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-----iPVIaD~DtGYG~~~~V~rtVk 172 (497)
-++++++++ +|++-+- |.-.. -|..+ .-..+.+.+.+++|.+.++ +||++=+.-++ +..++.+.++
T Consensus 159 ~~~~~~~~~~~ad~lelN~scP~~---~g~~~--~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~-~~~~~~~ia~ 232 (344)
T PRK05286 159 YLICLEKLYPYADYFTVNISSPNT---PGLRD--LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL-SDEELDDIAD 232 (344)
T ss_pred HHHHHHHHHhhCCEEEEEccCCCC---CCccc--ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC-CHHHHHHHHH
Confidence 345666665 8887765 32211 12222 2233455566777777766 99999888553 3346788889
Q ss_pred HHHHhCccEEEecCCCCCC----------CCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 173 GYIKAGFAGIILEDQVSPK----------GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 173 ~l~~AGaAGI~IEDq~~pK----------rCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
.++++||+||.+-...... ..|-..|..+.+.. .+-|+.++ +..+.++-|++=-.-..
T Consensus 233 ~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~--l~~v~~l~---~~~~~~ipIig~GGI~s------- 300 (344)
T PRK05286 233 LALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERS--TEVIRRLY---KELGGRLPIIGVGGIDS------- 300 (344)
T ss_pred HHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHH--HHHHHHHH---HHhCCCCCEEEECCCCC-------
Confidence 9999999999997754210 12222333332321 22222222 22223556666444332
Q ss_pred HHHHHHHHhcCCCEEEe
Q 010948 243 LRRSRAFADAGADVLFI 259 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfI 259 (497)
-+.+..+.++|||+|.+
T Consensus 301 ~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 301 AEDAYEKIRAGASLVQI 317 (344)
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 24455666799998876
No 220
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=93.23 E-value=1.1 Score=45.64 Aligned_cols=160 Identities=21% Similarity=0.257 Sum_probs=89.4
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCC-CCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCc
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPD-TGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD-~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGa 179 (497)
-|+.++++|+|++++.=+.- .-|+- .+..+..-|...++.+.+.+++|+=+++-.- ++ ..+..-...+|+
T Consensus 34 ea~~l~~~GvDgiiveN~~D----~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~n--d~---~aalaiA~A~ga 104 (254)
T PF03437_consen 34 EAEALEEGGVDGIIVENMGD----VPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRN--DP---KAALAIAAATGA 104 (254)
T ss_pred HHHHHHHCCCCEEEEecCCC----CCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecC--CC---HHHHHHHHHhCC
Confidence 46788999999999884331 12221 2334445566667777787788864444331 11 111122234567
Q ss_pred cEEEecCCCCCCCCCCCCC-ccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch-----hcccHHHHHHHHHHHHhcC
Q 010948 180 AGIILEDQVSPKGCGHTRG-RKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-----QALSLEESLRRSRAFADAG 253 (497)
Q Consensus 180 AGI~IEDq~~pKrCGH~~g-k~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~-----~~~~ldeaIeRAkAY~eAG 253 (497)
+=|.+|-- ||+.-+ .-++... +.. +.+.|+.++.+..|.|=-... ...+++|+.+. +.+..+
T Consensus 105 ~FIRv~~~-----~g~~~~d~G~~~~~--a~e---~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~--a~~~~~ 172 (254)
T PF03437_consen 105 DFIRVNVF-----VGAYVTDEGIIEGC--AGE---LLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKD--AVERGG 172 (254)
T ss_pred CEEEecCE-----EceecccCcccccc--HHH---HHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHH--HHHhcC
Confidence 66666532 232111 1122111 111 223344456677777743332 23357777654 335589
Q ss_pred CCEEEeccC-----CCHHHHHHHHHhCCCCCccc
Q 010948 254 ADVLFIDAL-----ASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 254 AD~IfIeg~-----~s~eei~~i~~~v~~vP~~~ 282 (497)
||+|++-|. ++.++++++.+..+ +|+++
T Consensus 173 aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVlv 205 (254)
T PF03437_consen 173 ADAVIVTGKATGEPPDPEKLKRVREAVP-VPVLV 205 (254)
T ss_pred CCEEEECCcccCCCCCHHHHHHHHhcCC-CCEEE
Confidence 999999875 46788999999887 67654
No 221
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=93.23 E-value=2.5 Score=43.87 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=86.2
Q ss_pred HHHHHHHhCCcEEEec-chhhhh-hhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCC-HHHHHHHHHHHHHh
Q 010948 101 SAKLVEKSGFSFCFTS-GFSISA-ARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN-AMNVKRTVKGYIKA 177 (497)
Q Consensus 101 SAriae~aGfdAI~vS-G~avSa-s~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~-~~~V~rtVk~l~~A 177 (497)
.|+++++.||+.|=+- |.-..- ...|.=..-.-..+.+.+.++.++.++++||.+=+-.||-. ..+..+.++.++++
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~ 161 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC 161 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh
Confidence 3566777899888765 322210 01121111122345666677788888899999988888754 34677888999999
Q ss_pred CccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH-hcCCCE
Q 010948 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA-DAGADV 256 (497)
Q Consensus 178 GaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~-eAGAD~ 256 (497)
|+++|.+.....+. .+ .|.. + -+++.+|+. + .++-|++--|-... +.++.+. +.|||+
T Consensus 162 G~d~i~vh~rt~~~--~~-~G~a--~-~~~i~~ik~---~-----~~iPVI~nGgI~s~-------~da~~~l~~~gadg 220 (321)
T PRK10415 162 GIQALTIHGRTRAC--LF-NGEA--E-YDSIRAVKQ---K-----VSIPVIANGDITDP-------LKARAVLDYTGADA 220 (321)
T ss_pred CCCEEEEecCcccc--cc-CCCc--C-hHHHHHHHH---h-----cCCcEEEeCCCCCH-------HHHHHHHhccCCCE
Confidence 99999998754211 11 1211 2 234444433 2 23345544444332 2233333 379999
Q ss_pred EEec--cCCCHHHHHHHHH
Q 010948 257 LFID--ALASKEEMKAFCE 273 (497)
Q Consensus 257 IfIe--g~~s~eei~~i~~ 273 (497)
|++- .+.++-.++++.+
T Consensus 221 VmiGR~~l~nP~if~~~~~ 239 (321)
T PRK10415 221 LMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred EEEChHhhcCChHHHHHHH
Confidence 9984 2345545555544
No 222
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.17 E-value=6.7 Score=41.65 Aligned_cols=138 Identities=17% Similarity=0.069 Sum_probs=85.3
Q ss_pred cCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHh---hcCcceEeeC------CC-CCCCH
Q 010948 96 CFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVIGDG------DN-GYGNA 164 (497)
Q Consensus 96 ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~r---a~~iPVIaD~------Dt-GYG~~ 164 (497)
++..--...+-++|++.|.+. +.+-. +-.-. ...|.+|.++.++.+.+ ..++.|.+-+ |+ |.-++
T Consensus 121 ~~n~~die~A~~~g~~~v~i~~s~Sd~---h~~~n-~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~ 196 (347)
T PLN02746 121 TPNLKGFEAAIAAGAKEVAVFASASES---FSKSN-INCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPP 196 (347)
T ss_pred cCCHHHHHHHHHcCcCEEEEEEecCHH---HHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCH
Confidence 345556667778899986665 22211 11111 23678888887766654 3357774333 22 22256
Q ss_pred HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCC-CeEEEEeccchhcccHHHHH
Q 010948 165 MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS-DIVIVARTDSRQALSLEESL 243 (497)
Q Consensus 165 ~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~-dfvIiARTDA~~~~~ldeaI 243 (497)
..+.+.++.++++||.-|.|-|.+ | +..+.++.+.++++++.. +. .+-+=... ++--++
T Consensus 197 ~~l~~~~~~~~~~Gad~I~l~DT~-----G------~a~P~~v~~lv~~l~~~~---~~~~i~~H~Hn------d~GlA~ 256 (347)
T PLN02746 197 SKVAYVAKELYDMGCYEISLGDTI-----G------VGTPGTVVPMLEAVMAVV---PVDKLAVHFHD------TYGQAL 256 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCc-----C------CcCHHHHHHHHHHHHHhC---CCCeEEEEECC------CCChHH
Confidence 789999999999999999999986 3 233566777777776542 21 22222222 233456
Q ss_pred HHHHHHHhcCCCEE
Q 010948 244 RRSRAFADAGADVL 257 (497)
Q Consensus 244 eRAkAY~eAGAD~I 257 (497)
.-+.+..+|||+.+
T Consensus 257 AN~lAA~~aGa~~v 270 (347)
T PLN02746 257 ANILVSLQMGISTV 270 (347)
T ss_pred HHHHHHHHhCCCEE
Confidence 77777889999975
No 223
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=93.13 E-value=2.6 Score=45.08 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=71.8
Q ss_pred HHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCc
Q 010948 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGa 179 (497)
--+++++++|.+++.+.+--.+. .+...+ -.+.++.. +.+..++|||+ .+-.+ .+.++++.++||
T Consensus 146 e~a~~l~eAGad~I~ihgrt~~q-~~~sg~---~~p~~l~~----~i~~~~IPVI~---G~V~t----~e~A~~~~~aGa 210 (369)
T TIGR01304 146 EIAPIVVKAGADLLVIQGTLVSA-EHVSTS---GEPLNLKE----FIGELDVPVIA---GGVND----YTTALHLMRTGA 210 (369)
T ss_pred HHHHHHHHCCCCEEEEeccchhh-hccCCC---CCHHHHHH----HHHHCCCCEEE---eCCCC----HHHHHHHHHcCC
Confidence 45688899999999998654442 121111 12333333 33445899998 11122 344456667999
Q ss_pred cEEEecCCCCCCCCCCCCCccc---cCHHHHHHHHHHHHHH-HHhcCC-CeEEEEeccchhcccHHHHHHHHHHHHhcCC
Q 010948 180 AGIILEDQVSPKGCGHTRGRKV---VSREEAVMRIKAAVDA-RKESGS-DIVIVARTDSRQALSLEESLRRSRAFADAGA 254 (497)
Q Consensus 180 AGI~IEDq~~pKrCGH~~gk~l---vp~ee~~~KIrAAv~A-r~~~g~-dfvIiARTDA~~~~~ldeaIeRAkAY~eAGA 254 (497)
++|.+=-. .+|.....+ +|..+.+..+.++++- .++.+. ..-|+|=-.-. ..-+=+++ .++||
T Consensus 211 DgV~~G~g-----g~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~------tg~di~kA-lAlGA 278 (369)
T TIGR01304 211 AGVIVGPG-----GANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIE------TSGDLVKA-IACGA 278 (369)
T ss_pred CEEEECCC-----CCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCC------CHHHHHHH-HHcCC
Confidence 99983211 133332222 6766666666655432 223332 35555432211 11222333 35899
Q ss_pred CEEEecc
Q 010948 255 DVLFIDA 261 (497)
Q Consensus 255 D~IfIeg 261 (497)
|++++-.
T Consensus 279 daV~iGt 285 (369)
T TIGR01304 279 DAVVLGS 285 (369)
T ss_pred CEeeeHH
Confidence 9999853
No 224
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=93.12 E-value=7.3 Score=44.14 Aligned_cols=234 Identities=19% Similarity=0.199 Sum_probs=126.9
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-Ccce--EeeCC--CCCCC-HHH-HHHHHHH
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPV--IGDGD--NGYGN-AMN-VKRTVKG 173 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPV--IaD~D--tGYG~-~~~-V~rtVk~ 173 (497)
-|..+.++||+.+=+.|.+.-. -++|-.+.-+ -|.+ +.+++.. +.|+ ++-.- -||.. +.+ +..-++.
T Consensus 32 ia~~ld~~G~~siE~~GGatf~--~~~~~~~e~p-~e~l---r~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~ 105 (593)
T PRK14040 32 IAAKLDKVGYWSLESWGGATFD--ACIRFLGEDP-WERL---RELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVER 105 (593)
T ss_pred HHHHHHHcCCCEEEecCCcchh--hhccccCCCH-HHHH---HHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHH
Confidence 4567788999999886433211 1344443333 3333 3343332 3554 33332 25665 554 5566888
Q ss_pred HHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCe-EEEEeccchhcccHHHHHHHHHHHHhc
Q 010948 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVARTDSRQALSLEESLRRSRAFADA 252 (497)
Q Consensus 174 l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~df-vIiARTDA~~~~~ldeaIeRAkAY~eA 252 (497)
..+.|++.++|-|... + . .+++.+++..++.|... ..+.=|++ ..+.++.-++-++.+.++
T Consensus 106 a~~~Gid~~rifd~ln-----d--------~----~~~~~ai~~ak~~G~~~~~~i~yt~~-p~~~~~~~~~~a~~l~~~ 167 (593)
T PRK14040 106 AVKNGMDVFRVFDAMN-----D--------P----RNLETALKAVRKVGAHAQGTLSYTTS-PVHTLQTWVDLAKQLEDM 167 (593)
T ss_pred HHhcCCCEEEEeeeCC-----c--------H----HHHHHHHHHHHHcCCeEEEEEEEeeC-CccCHHHHHHHHHHHHHc
Confidence 8899999999998531 1 2 34444444444434321 11223332 234577888889999999
Q ss_pred CCCEEEec---cCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCC---CHHHHHhcCCCEEeccchHH--HHHHHHHHH
Q 010948 253 GADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPIL---NPLELEELGFKLVAYPLSLI--GVSVRAMQD 323 (497)
Q Consensus 253 GAD~IfIe---g~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~l---t~~eL~elGv~~Vsyp~~ll--~aa~~Am~~ 323 (497)
|||.|.+- |+-.++++.++++.+.. +.+++.+ .. --+..+ +.-.--++|++.|--....+ ++...+++.
T Consensus 168 Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~-H~-Hnt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~ 245 (593)
T PRK14040 168 GVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHL-HC-HATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATET 245 (593)
T ss_pred CCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEE-EE-CCCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHH
Confidence 99999985 45667777777765421 1223332 11 112223 23344577998876544432 445566666
Q ss_pred HHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccc
Q 010948 324 ALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSM 365 (497)
Q Consensus 324 al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~~~ 365 (497)
.+..|+..+... ...++.+.++-.| |.+..++|..-+
T Consensus 246 vv~~L~~~~~~~---gidl~~l~~is~~--~~~v~~~Y~~~~ 282 (593)
T PRK14040 246 LVATLEGTERDT---GLDILKLEEIAAY--FREVRKKYAKFE 282 (593)
T ss_pred HHHHHHhcCCCc---CCCHHHHHHHHHH--HHHHHHHhccCC
Confidence 666665432221 1334444333322 555667776643
No 225
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.11 E-value=2 Score=44.03 Aligned_cols=147 Identities=19% Similarity=0.185 Sum_probs=89.9
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHH------HHHHHHHHHhhcC
Q 010948 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGE------MVDQGQLITQAVS 150 (497)
Q Consensus 77 ~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldE------ml~~~r~I~ra~~ 150 (497)
.++++.+..+.....++.+=-..+..|.+++- |++++|.. . -.+|+.|.-++--++ +...++.+.+..+
T Consensus 106 ~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~---Av~~GGg~-~-HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p 180 (273)
T PRK05848 106 LTSRYVEALESHKVKLLDTRKTRPLLRIFEKY---SVRNGGAS-N-HRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIP 180 (273)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCcchhHHHHH---HHHhCCCc-c-ccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCC
Confidence 45566666665555666666677778888875 77777643 2 478999877665443 3334455544443
Q ss_pred --cceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEE
Q 010948 151 --IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (497)
Q Consensus 151 --iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi 228 (497)
.+|.++.++ .+++ ++..++|++.|.++.- +++ .|+.+++..+...+...|.
T Consensus 181 ~~~~I~VEv~t----leea----~~A~~~GaDiI~LDn~---------------~~e----~l~~~v~~~~~~~~~~~ie 233 (273)
T PRK05848 181 FTAKIEIECES----LEEA----KNAMNAGADIVMCDNM---------------SVE----EIKEVVAYRNANYPHVLLE 233 (273)
T ss_pred CCceEEEEeCC----HHHH----HHHHHcCCCEEEECCC---------------CHH----HHHHHHHHhhccCCCeEEE
Confidence 678888763 3333 4556899999998442 233 3333443322212344443
Q ss_pred EeccchhcccHHHHHHHHHHHHhcCCCEEEeccCC
Q 010948 229 ARTDSRQALSLEESLRRSRAFADAGADVLFIDALA 263 (497)
Q Consensus 229 ARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~ 263 (497)
|- + ++ ..+.++.|++.|+|+|.+-++.
T Consensus 234 As----G--gI--t~~ni~~ya~~GvD~IsvG~l~ 260 (273)
T PRK05848 234 AS----G--NI--TLENINAYAKSGVDAISSGSLI 260 (273)
T ss_pred EE----C--CC--CHHHHHHHHHcCCCEEEeChhh
Confidence 32 1 22 3688999999999999986653
No 226
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=1.8 Score=45.84 Aligned_cols=141 Identities=20% Similarity=0.183 Sum_probs=91.6
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkA 248 (497)
+..+..+++||++|-+--+. -|++... .-.+.+++.+-|+-|.++ |..+.|..-|=. ....++...+-.+.
T Consensus 17 ~~l~~ai~~GADaVY~G~~~---~~~R~~a-~nfs~~~l~e~i~~ah~~----gkk~~V~~N~~~-~~~~~~~~~~~l~~ 87 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEKE---FGLRRRA-LNFSVEDLAEAVELAHSA----GKKVYVAVNTLL-HNDELETLERYLDR 87 (347)
T ss_pred HHHHHHHHcCCCEEEeCCcc---ccccccc-ccCCHHHHHHHHHHHHHc----CCeEEEEecccc-ccchhhHHHHHHHH
Confidence 34456678999999995552 3555443 456777755544444433 555666555433 23345666677788
Q ss_pred HHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHH
Q 010948 249 FADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQD 323 (497)
Q Consensus 249 Y~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~ 323 (497)
+.++|+|+|.+ .++..+.-+.+..|.+|.-+..... .+...+.+-++++|++||..|--+-..-+..+.+
T Consensus 88 l~e~GvDaviv---~Dpg~i~l~~e~~p~l~ih~S~q~~--v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~ 157 (347)
T COG0826 88 LVELGVDAVIV---ADPGLIMLARERGPDLPIHVSTQAN--VTNAETAKFWKELGAKRVVLPRELSLEEIKEIKE 157 (347)
T ss_pred HHHcCCCEEEE---cCHHHHHHHHHhCCCCcEEEeeeEe--cCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHH
Confidence 89999999997 4556777777777777765554432 2334578999999999999988765544444433
No 227
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=93.05 E-value=1.4 Score=44.76 Aligned_cols=128 Identities=12% Similarity=0.040 Sum_probs=81.9
Q ss_pred HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccc----hhcccHHHHHHHH
Q 010948 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS----RQALSLEESLRRS 246 (497)
Q Consensus 171 Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA----~~~~~ldeaIeRA 246 (497)
+....++||+=|-|=+.. .---++|--..+ +.+++.. ..+..++-|--. +....++...+.+
T Consensus 14 a~~A~~~GAdRiELc~~L--------~~GGlTPS~g~i---~~~~~~~---~ipv~vMIRPR~gdF~Ys~~E~~~M~~di 79 (248)
T PRK11572 14 ALTAQQAGADRIELCAAP--------KEGGLTPSLGVL---KSVRERV---TIPVHPIIRPRGGDFCYSDGEFAAMLEDI 79 (248)
T ss_pred HHHHHHcCCCEEEEccCc--------CCCCcCCCHHHH---HHHHHhc---CCCeEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 345567899988875443 222255554444 3444432 356777777543 2345688899999
Q ss_pred HHHHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 010948 247 RAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 247 kAY~eAGAD~IfIeg~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
+.+.++|||.+++-.+ -+.+.++++.+...+.|..+..--.--.-|.-.+++|.++||.+|+-...
T Consensus 80 ~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg 150 (248)
T PRK11572 80 ATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQ 150 (248)
T ss_pred HHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCC
Confidence 9999999999998655 35677888887765555544432111111222578999999999998544
No 228
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.98 E-value=4.3 Score=41.66 Aligned_cols=204 Identities=14% Similarity=0.114 Sum_probs=110.3
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccE
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAG 181 (497)
|+.+.++|++.|=++++... --.|.... -.|.+ +.|.+..+..+.+=.. + .+-+++..++|+..
T Consensus 32 a~~L~~~Gv~~IEvgsf~~p---~~~p~~~d--~~e~~---~~l~~~~~~~~~~l~~----~----~~~ie~A~~~g~~~ 95 (287)
T PRK05692 32 IDRLSAAGLSYIEVASFVSP---KWVPQMAD--AAEVM---AGIQRRPGVTYAALTP----N----LKGLEAALAAGADE 95 (287)
T ss_pred HHHHHHcCCCEEEeCCCcCc---cccccccc--HHHHH---HhhhccCCCeEEEEec----C----HHHHHHHHHcCCCE
Confidence 45667889999998865411 01333221 13333 3343321222211011 2 33345666889999
Q ss_pred EEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE-eccch-----hcccHHHHHHHHHHHHhcCCC
Q 010948 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA-RTDSR-----QALSLEESLRRSRAFADAGAD 255 (497)
Q Consensus 182 I~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA-RTDA~-----~~~~ldeaIeRAkAY~eAGAD 255 (497)
|+|-...++. |...+-=.+.+|.+++++.+++..++.| +.+.+ =+.+. ...+.+..++-++.+.++|||
T Consensus 96 v~i~~~~s~~---~~~~n~~~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d 170 (287)
T PRK05692 96 VAVFASASEA---FSQKNINCSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY 170 (287)
T ss_pred EEEEEecCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9998765321 2221222357888999998888877654 33321 11111 123568889999999999999
Q ss_pred EEEec---cCCCHHHHHHHHHh----CCCCCccceeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--------HHH
Q 010948 256 VLFID---ALASKEEMKAFCEI----SPLVPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--------GVS 317 (497)
Q Consensus 256 ~IfIe---g~~s~eei~~i~~~----v~~vP~~~N~l~~~g~tP~lt---~~eL~elGv~~Vsyp~~ll--------~aa 317 (497)
.|.+. |.-++.++.++.+. ++.+| +.+ .. -.+..+. .-.--+.|++.+--....+ ++.
T Consensus 171 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~--i~~-H~-Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~aG 246 (287)
T PRK05692 171 EISLGDTIGVGTPGQVRAVLEAVLAEFPAER--LAG-HF-HDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGASG 246 (287)
T ss_pred EEEeccccCccCHHHHHHHHHHHHHhCCCCe--EEE-Ee-cCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCccc
Confidence 99885 34566777666654 43222 222 11 1112222 2333466888775544433 344
Q ss_pred HHHHHHHHHHHHc
Q 010948 318 VRAMQDALTAIKG 330 (497)
Q Consensus 318 ~~Am~~al~~i~~ 330 (497)
..++++.+..|..
T Consensus 247 N~~~E~lv~~L~~ 259 (287)
T PRK05692 247 NVATEDVLYMLHG 259 (287)
T ss_pred cccHHHHHHHHHh
Confidence 5555555555543
No 229
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.97 E-value=2.6 Score=43.99 Aligned_cols=134 Identities=20% Similarity=0.281 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccH
Q 010948 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (497)
Q Consensus 160 GYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~l 239 (497)
|++++....+.++++.+.|...+||- +|.. +.++-+++|++++++ .|+++.|. .|+......
T Consensus 138 ~~~~~~~~~~~a~~~~~~Gf~~~KiK-------vg~~------~~~~d~~~v~air~~---~g~~~~l~--vDaN~~~~~ 199 (355)
T cd03321 138 GLDGAKLATERAVTAAEEGFHAVKTK-------IGYP------TADEDLAVVRSIRQA---VGDGVGLM--VDYNQSLTV 199 (355)
T ss_pred CCChHHHHHHHHHHHHHhhhHHHhhh-------cCCC------ChHhHHHHHHHHHHh---hCCCCEEE--EeCCCCcCH
Confidence 55666677777788888899999882 3321 234456788887766 46777664 588888889
Q ss_pred HHHHHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhc----CCCEEeccch
Q 010948 240 EESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL----GFKLVAYPLS 312 (497)
Q Consensus 240 deaIeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~el----Gv~~Vsyp~~ 312 (497)
++|++.++++++.+. .|+|-+ .+.+.++++.+..+ +|..+ + .. ..+..++.++ +++.+..-..
T Consensus 200 ~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~~~~-ipia~----~-E~--~~~~~~~~~~i~~~~~d~i~~~~~ 269 (355)
T cd03321 200 PEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIASALR-TPVQM----G-EN--WLGPEEMFKALSAGACDLVMPDLM 269 (355)
T ss_pred HHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHHHhcC-CCEEE----c-CC--CcCHHHHHHHHHhCCCCeEecCHh
Confidence 999999999998764 566643 35678889988875 56432 1 11 2355555544 4666665444
Q ss_pred HHHHHHHHH
Q 010948 313 LIGVSVRAM 321 (497)
Q Consensus 313 ll~aa~~Am 321 (497)
...-...++
T Consensus 270 ~~GGit~~~ 278 (355)
T cd03321 270 KIGGVTGWL 278 (355)
T ss_pred hhCCHHHHH
Confidence 433333333
No 230
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.94 E-value=0.42 Score=46.96 Aligned_cols=128 Identities=19% Similarity=0.157 Sum_probs=72.6
Q ss_pred HHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccc----hhcccHHHHHHH
Q 010948 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS----RQALSLEESLRR 245 (497)
Q Consensus 170 tVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA----~~~~~ldeaIeR 245 (497)
.+...++.||+=|-| |+++.---++|--..+.. +++.. +.+..++-|--. +....++...+.
T Consensus 12 ~a~~A~~~GAdRiEL--------c~~l~~GGlTPS~g~i~~---~~~~~---~ipv~vMIRpr~gdF~Ys~~E~~~M~~d 77 (201)
T PF03932_consen 12 DALAAEAGGADRIEL--------CSNLEVGGLTPSLGLIRQ---AREAV---DIPVHVMIRPRGGDFVYSDEEIEIMKED 77 (201)
T ss_dssp HHHHHHHTT-SEEEE--------EBTGGGT-B---HHHHHH---HHHHT---TSEEEEE--SSSS-S---HHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEE--------CCCccCCCcCcCHHHHHH---HHhhc---CCceEEEECCCCCCccCCHHHHHHHHHH
Confidence 344556889998877 333322236666544444 44432 457777777532 234568889999
Q ss_pred HHHHHhcCCCEEEeccCC-----CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 010948 246 SRAFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (497)
Q Consensus 246 AkAY~eAGAD~IfIeg~~-----s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~ 311 (497)
.+.+.++|||.+++-.+. +.+.++++.+...+.|..++.--..-.-|.-.+++|.++||++|+-..
T Consensus 78 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSG 148 (201)
T PF03932_consen 78 IRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSG 148 (201)
T ss_dssp HHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEEST
T ss_pred HHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCC
Confidence 999999999999987663 567788888766555655544211111112257899999999998743
No 231
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.93 E-value=3.7 Score=43.15 Aligned_cols=146 Identities=15% Similarity=0.183 Sum_probs=82.3
Q ss_pred HHHHHHhCCcEEEec---chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhC
Q 010948 102 AKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (497)
Q Consensus 102 Ariae~aGfdAI~vS---G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG 178 (497)
++.+.++|++.|=++ |++-+...+|.|- .+-.|++..++.... +..+.+=+..|+++. +-+++..+.|
T Consensus 31 ~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~---~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~~----~dl~~a~~~g 101 (337)
T PRK08195 31 ARALDAAGVPVIEVTHGDGLGGSSFNYGFGA---HTDEEYIEAAAEVVK--QAKIAALLLPGIGTV----DDLKMAYDAG 101 (337)
T ss_pred HHHHHHcCCCEEEeecCCCCCCccccCCCCC---CCHHHHHHHHHHhCC--CCEEEEEeccCcccH----HHHHHHHHcC
Confidence 456778999999887 3322211225443 334555555543332 233333234566764 3456777899
Q ss_pred ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEE
Q 010948 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (497)
Q Consensus 179 aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~If 258 (497)
++.|.|-.. |.. .+...+-|+.+ ++.|....++. .++ .....++.++-++...++|||+|.
T Consensus 102 vd~iri~~~-----~~e--------~~~~~~~i~~a----k~~G~~v~~~l-~~a-~~~~~e~l~~~a~~~~~~Ga~~i~ 162 (337)
T PRK08195 102 VRVVRVATH-----CTE--------ADVSEQHIGLA----RELGMDTVGFL-MMS-HMAPPEKLAEQAKLMESYGAQCVY 162 (337)
T ss_pred CCEEEEEEe-----cch--------HHHHHHHHHHH----HHCCCeEEEEE-Eec-cCCCHHHHHHHHHHHHhCCCCEEE
Confidence 999998653 221 12222222222 23343333322 233 234568889999999999999998
Q ss_pred ec---cCCCHHHHHHHHHhC
Q 010948 259 ID---ALASKEEMKAFCEIS 275 (497)
Q Consensus 259 Ie---g~~s~eei~~i~~~v 275 (497)
+- |.-.++++.++.+.+
T Consensus 163 i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 163 VVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred eCCCCCCCCHHHHHHHHHHH
Confidence 84 345667777666543
No 232
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=92.90 E-value=4.3 Score=41.21 Aligned_cols=207 Identities=20% Similarity=0.231 Sum_probs=108.2
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCC--CCCC-HHH-HHHHHHHHHH
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMN-VKRTVKGYIK 176 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~Dt--GYG~-~~~-V~rtVk~l~~ 176 (497)
-|+.+.++|++.|=+++-+.-.+..++-.. +-.|.+..++.....+.+-.++=+.. ||.. |.+ ....+++..+
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~---~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~ 102 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRFLNE---DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAK 102 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccccCC---CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHH
Confidence 477888999999988742221122444322 11233333333222222222222222 4432 344 4566788889
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEE-EEeccchhcccHHHHHHHHHHHHhcCCC
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDSRQALSLEESLRRSRAFADAGAD 255 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvI-iARTDA~~~~~ldeaIeRAkAY~eAGAD 255 (497)
.|++.|+|-+... + ++++..+++..++.|..+.+ +.=+++ .....+..++.++...++|||
T Consensus 103 ~g~~~iri~~~~~-------------~----~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~~Ga~ 164 (275)
T cd07937 103 NGIDIFRIFDALN-------------D----VRNLEVAIKAVKKAGKHVEGAICYTGS-PVHTLEYYVKLAKELEDMGAD 164 (275)
T ss_pred cCCCEEEEeecCC-------------h----HHHHHHHHHHHHHCCCeEEEEEEecCC-CCCCHHHHHHHHHHHHHcCCC
Confidence 9999999977531 1 33444444444443432222 111233 224568888999999999999
Q ss_pred EEEec---cCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCC---CHHHHHhcCCCEEeccchHH--HHHHHHHHHHHH
Q 010948 256 VLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPIL---NPLELEELGFKLVAYPLSLI--GVSVRAMQDALT 326 (497)
Q Consensus 256 ~IfIe---g~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~l---t~~eL~elGv~~Vsyp~~ll--~aa~~Am~~al~ 326 (497)
.|.+. |.-+++++.++.+.+.. +|.++.+=.. -+..+ +.-.--+.|++.|--....+ ++...++++.+.
T Consensus 165 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~H--nd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~ 242 (275)
T cd07937 165 SICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTH--DTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVA 242 (275)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEec--CCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHH
Confidence 99885 44567777766654321 2223332111 11122 12333366888877544433 344555556555
Q ss_pred HHHc
Q 010948 327 AIKG 330 (497)
Q Consensus 327 ~i~~ 330 (497)
.|..
T Consensus 243 ~L~~ 246 (275)
T cd07937 243 ALRG 246 (275)
T ss_pred HHHc
Confidence 5543
No 233
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.87 E-value=1.8 Score=46.21 Aligned_cols=139 Identities=21% Similarity=0.276 Sum_probs=70.2
Q ss_pred hHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhC
Q 010948 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (497)
Q Consensus 99 alSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG 178 (497)
.--+++++++|.|+|.+.+-... ..++.+.. .+.++...++ ..++|||+ |+.. ..+.++.++++|
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~-~~h~~~~~---~~~~i~~~ik----~~~ipVIa------G~V~-t~e~A~~l~~aG 208 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVS-AEHVSKEG---EPLNLKEFIY----ELDVPVIV------GGCV-TYTTALHLMRTG 208 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchh-hhccCCcC---CHHHHHHHHH----HCCCCEEE------eCCC-CHHHHHHHHHcC
Confidence 35667888999999999763322 12444332 2344433333 35899998 2211 134556677899
Q ss_pred ccEEEecCCCCCCCCCCCCCcc---ccCHHHHHHHHHHHHH-HHHhc-CCCeEEEEeccchhcccHHHHHHHHHHHHhcC
Q 010948 179 FAGIILEDQVSPKGCGHTRGRK---VVSREEAVMRIKAAVD-ARKES-GSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (497)
Q Consensus 179 aAGI~IEDq~~pKrCGH~~gk~---lvp~ee~~~KIrAAv~-Ar~~~-g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAG 253 (497)
|++|++- ..| .++|..... -+|+-..+....++.+ -.++. +.+.-|+|=-- +...-+-++++ .+|
T Consensus 209 AD~V~VG--~G~-Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGG------I~~~~diakAl-alG 278 (368)
T PRK08649 209 AAGVLVG--IGP-GAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGG------IGTSGDIAKAI-ACG 278 (368)
T ss_pred CCEEEEC--CCC-CcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCC------CCCHHHHHHHH-HcC
Confidence 9999883 322 224443211 1454333333222211 11111 12344554321 11112334444 499
Q ss_pred CCEEEeccC
Q 010948 254 ADVLFIDAL 262 (497)
Q Consensus 254 AD~IfIeg~ 262 (497)
||++++-..
T Consensus 279 Ad~Vm~Gs~ 287 (368)
T PRK08649 279 ADAVMLGSP 287 (368)
T ss_pred CCeecccch
Confidence 999998653
No 234
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=92.83 E-value=4.4 Score=42.52 Aligned_cols=156 Identities=15% Similarity=0.053 Sum_probs=86.6
Q ss_pred HHHHHHHHhCCcEEEec---chhhhhhh----cccCCCCCCCHHH----HHHHHHHHHhhcCcceEe-----eCCCCCC-
Q 010948 100 LSAKLVEKSGFSFCFTS---GFSISAAR----LALPDTGFISYGE----MVDQGQLITQAVSIPVIG-----DGDNGYG- 162 (497)
Q Consensus 100 lSAriae~aGfdAI~vS---G~avSas~----lG~PD~g~ltldE----ml~~~r~I~ra~~iPVIa-----D~DtGYG- 162 (497)
-.|+.+.++|||+|-+- |+-+.-.. .=..|.-.=+++. +++.++.|+++++.||.+ |...| |
T Consensus 146 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~-G~ 224 (337)
T PRK13523 146 QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPG-GL 224 (337)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC-CC
Confidence 46788999999999876 33332111 0123321124442 234455555555667664 22222 3
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCC-CCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGH-TRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH-~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
+.++..+.++.++++|++.|++-.....+.... ..+. ..+++++|+.++ +.+.+.+++-..
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~----~~~~~~~ik~~~------~ipVi~~G~i~~-------- 286 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGY----QVPFAEHIREHA------NIATGAVGLITS-------- 286 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccc----cHHHHHHHHhhc------CCcEEEeCCCCC--------
Confidence 356788899999999999999976542211111 1111 123455554332 345566666322
Q ss_pred HHHHHHHHHhcC-CCEEEec--cCCCHHHHHHHHHhC
Q 010948 242 SLRRSRAFADAG-ADVLFID--ALASKEEMKAFCEIS 275 (497)
Q Consensus 242 aIeRAkAY~eAG-AD~IfIe--g~~s~eei~~i~~~v 275 (497)
.+.+..+.+.| ||+|.+- .+.+++..+++.+.+
T Consensus 287 -~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~ 322 (337)
T PRK13523 287 -GAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKEL 322 (337)
T ss_pred -HHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHc
Confidence 24455556665 9999872 345666777776654
No 235
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=92.81 E-value=0.54 Score=51.99 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=59.8
Q ss_pred HHHHHHHhC-C-CceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe
Q 010948 79 KSLRQILEL-P-GVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (497)
Q Consensus 79 ~~Lr~ll~~-~-~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa 155 (497)
..++++.+. + -.+++-|+-+.--|+.+.++|+|+|.+| |-+..+... .......+...-+..+..+++..++|||+
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~-~~~~~g~~~~~~i~~~~~~~~~~~vpVIa 356 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQ-EVCAVGRGQATAVYKVASIAAQHGVPVIA 356 (505)
T ss_pred HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCc-cccccCCCcccHHHHHHHHHHhcCCeEEE
Confidence 344454443 2 3444568999999999999999999987 222111110 00001112222344566677778899999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEec
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~IE 185 (497)
|. |+.++..+. +...+||++|.+=
T Consensus 357 dG--GI~~~~di~----kAla~GA~~V~vG 380 (505)
T PLN02274 357 DG--GISNSGHIV----KALTLGASTVMMG 380 (505)
T ss_pred eC--CCCCHHHHH----HHHHcCCCEEEEc
Confidence 84 444444444 3346899999983
No 236
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=92.81 E-value=0.66 Score=49.08 Aligned_cols=91 Identities=14% Similarity=0.030 Sum_probs=59.3
Q ss_pred CCceeec-ccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHH
Q 010948 88 PGVHQGP-ACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM 165 (497)
Q Consensus 88 ~~~iv~p-~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~ 165 (497)
+++.++- |+-++--|+.+.++|+|++.+| |-+-.+. --.-+...++.=+.+..+...++..++|||+|.---+++
T Consensus 149 p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSict-tR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~g-- 225 (343)
T TIGR01305 149 PEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCT-TRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPG-- 225 (343)
T ss_pred CCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCccc-CceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchh--
Confidence 3455555 4999999999999999999999 4442211 113344444544555556666666689999985443432
Q ss_pred HHHHHHHHHHHhCccEEEec
Q 010948 166 NVKRTVKGYIKAGFAGIILE 185 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IE 185 (497)
++. |.+ .+||++|.|-
T Consensus 226 DI~---KAL-A~GAd~VMlG 241 (343)
T TIGR01305 226 DVA---KAF-GAGADFVMLG 241 (343)
T ss_pred HHH---HHH-HcCCCEEEEC
Confidence 333 333 5899999994
No 237
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=92.78 E-value=3.8 Score=42.82 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=55.6
Q ss_pred HHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCc
Q 010948 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (497)
Q Consensus 101 SAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGa 179 (497)
-.++++..+.+++-+. ...- -...|.. .-+++..++.++.|++.+++||++= ..|+|. ..+.++.++++|+
T Consensus 133 ~~~~i~~i~adal~i~ln~~q---~~~~p~g-~~~f~~~le~i~~i~~~~~vPVivK-~~g~g~---~~~~a~~L~~aGv 204 (333)
T TIGR02151 133 AQEAIDMIEADALAIHLNVLQ---ELVQPEG-DRNFKGWLEKIAEICSQLSVPVIVK-EVGFGI---SKEVAKLLADAGV 204 (333)
T ss_pred HHHHHHHhcCCCEEEcCcccc---cccCCCC-CcCHHHHHHHHHHHHHhcCCCEEEE-ecCCCC---CHHHHHHHHHcCC
Confidence 4466677777877764 2111 1234442 3457778899999999999999986 457764 3577789999999
Q ss_pred cEEEecC
Q 010948 180 AGIILED 186 (497)
Q Consensus 180 AGI~IED 186 (497)
++|.+-.
T Consensus 205 d~I~Vsg 211 (333)
T TIGR02151 205 SAIDVAG 211 (333)
T ss_pred CEEEECC
Confidence 9999954
No 238
>PRK07695 transcriptional regulator TenI; Provisional
Probab=92.77 E-value=7.1 Score=37.33 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHhhc--CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHH
Q 010948 133 ISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMR 210 (497)
Q Consensus 133 ltldEml~~~r~I~ra~--~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~K 210 (497)
.+.+++...++.+.+.. ..++++.-+ +....+.|++|+|+.... .+.+
T Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~liin~~------------~~la~~~~~~gvHl~~~~-------------~~~~----- 87 (201)
T PRK07695 38 KSAKELYEGVESLLKKGVPASKLIINDR------------VDIALLLNIHRVQLGYRS-------------FSVR----- 87 (201)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEECH------------HHHHHHcCCCEEEeCccc-------------CCHH-----
Confidence 67778888788776542 235776521 234456799999995431 1111
Q ss_pred HHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC-----------CCHHHHHHHHHhCCCCC
Q 010948 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISPLVP 279 (497)
Q Consensus 211 IrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~-----------~s~eei~~i~~~v~~vP 279 (497)
.+ ++.. ++..|-+.+. . ++.++...++|||.|++..+ ...+.++++.+.++ +|
T Consensus 88 --~~---r~~~-~~~~ig~s~~-----s----~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~-ip 151 (201)
T PRK07695 88 --SV---REKF-PYLHVGYSVH-----S----LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALS-IP 151 (201)
T ss_pred --HH---HHhC-CCCEEEEeCC-----C----HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCC-CC
Confidence 11 1112 3555555432 2 34466677899999986421 13467777777654 45
Q ss_pred ccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 280 KMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 280 ~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
.. ..||-+| -+..++.+.|+..|..+..++.
T Consensus 152 vi----a~GGI~~-~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 152 VI----AIGGITP-ENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred EE----EEcCCCH-HHHHHHHHcCCCEEEEEHHHhc
Confidence 43 2234432 3578888999999988887764
No 239
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=92.77 E-value=2.1 Score=43.54 Aligned_cols=154 Identities=22% Similarity=0.252 Sum_probs=91.9
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
-|+.+|+.|||++.+.-++-+= =++|.+..+..-|...+++|.+.+++||=+.. --|. ......-....||+
T Consensus 39 dA~~leegG~DavivEN~gD~P---f~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNV---LrNd--~vaA~~IA~a~gA~ 110 (263)
T COG0434 39 DAAALEEGGVDAVIVENYGDAP---FLKDVGPETVAAMAVIVREVVREVSIPVGVNV---LRND--AVAALAIAYAVGAD 110 (263)
T ss_pred HHHHHHhCCCcEEEEeccCCCC---CCCCCChHHHHHHHHHHHHHHHhccccceeee---eccc--cHHHHHHHHhcCCC
Confidence 3677889999999999766431 13477788888999999999999999973211 0010 11111111235665
Q ss_pred EEEe--------cCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch-----hcccHHHHHHHHH
Q 010948 181 GIIL--------EDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-----QALSLEESLRRSR 247 (497)
Q Consensus 181 GI~I--------EDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~-----~~~~ldeaIeRAk 247 (497)
=|.. -|| |-..|+ ...+.|.+ ..++.+..|.|-.+-- ....++++++.+
T Consensus 111 FIRVN~~tg~~~tdq------Giieg~-----A~e~~r~r------~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dt- 172 (263)
T COG0434 111 FIRVNVLTGAYATDQ------GIIEGN-----AAELARYR------ARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDT- 172 (263)
T ss_pred EEEEEeeeceEeccc------ceecch-----HHHHHHHH------HhccCCcEEEeecchhcccccCCcCHHHHHHHH-
Confidence 4443 333 222221 11122322 2245567777755542 123567666553
Q ss_pred HHHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCCccc
Q 010948 248 AFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 248 AY~eAGAD~IfIeg~-----~s~eei~~i~~~v~~vP~~~ 282 (497)
.+..+||+|.+-|. ++.++++.+.+..+ +|+++
T Consensus 173 -ver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~-~pvlv 210 (263)
T COG0434 173 -VERGLADAVIVTGSRTGSPPDLEELKLAKEAVD-TPVLV 210 (263)
T ss_pred -HHccCCCEEEEecccCCCCCCHHHHHHHHhccC-CCEEE
Confidence 34577899999874 67899999999877 67654
No 240
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=92.76 E-value=3.5 Score=43.76 Aligned_cols=132 Identities=22% Similarity=0.223 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHH
Q 010948 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (497)
Q Consensus 134 tldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrA 213 (497)
.+.++....+.+++..++++|++- . +....+.|++|||+.... .|..+
T Consensus 185 ~~~~~a~~L~~l~~~~~~~lIIND-----~-------vdlAl~~~aDGVHLgq~d-------------l~~~~------- 232 (347)
T PRK02615 185 QRLEEAKKLKELCHRYGALFIVND-----R-------VDIALAVDADGVHLGQED-------------LPLAV------- 232 (347)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEeC-----h-------HHHHHHcCCCEEEeChhh-------------cCHHH-------
Confidence 344555666677777788988862 1 223345899999994321 12211
Q ss_pred HHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC-----------CCHHHHHHHHHhCCCCCccc
Q 010948 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 214 Av~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~-----------~s~eei~~i~~~v~~vP~~~ 282 (497)
++.-+|++ .+++++-. ..+| ++...++|||.|++-.+ ...+.++.+++..+ +|.
T Consensus 233 ---aR~llg~~-~iIG~S~H----s~~e----~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~-iPv-- 297 (347)
T PRK02615 233 ---ARQLLGPE-KIIGRSTT----NPEE----MAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAP-IPW-- 297 (347)
T ss_pred ---HHHhcCCC-CEEEEecC----CHHH----HHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCC-CCE--
Confidence 12223544 45666543 2333 34445789999987221 23577888877654 453
Q ss_pred eeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 283 N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
++-||-++ -++.++.+.|+..|.....++.
T Consensus 298 --~AiGGI~~-~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 298 --FAIGGIDK-SNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred --EEECCCCH-HHHHHHHHcCCcEEEEeHHHhC
Confidence 23345433 3678899999999988777664
No 241
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=92.72 E-value=3 Score=43.77 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=102.2
Q ss_pred eecccCChHHHHHHH------HhCCcEEEecchhhhhhhcccCCC-CCCCHH---HHHHHHHHHHhhc-CcceEeeC---
Q 010948 92 QGPACFDALSAKLVE------KSGFSFCFTSGFSISAARLALPDT-GFISYG---EMVDQGQLITQAV-SIPVIGDG--- 157 (497)
Q Consensus 92 v~p~ayDalSAriae------~aGfdAI~vSG~avSas~lG~PD~-g~ltld---Eml~~~r~I~ra~-~iPVIaD~--- 157 (497)
.|||.|=..--++++ +.|.+++.+=|..- ....... +.-.++ =+...++.|.+.. ++-||+|.
T Consensus 41 smPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~---~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc 117 (320)
T cd04824 41 SLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVPL---KPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCLC 117 (320)
T ss_pred CCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCc---cccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeecc
Confidence 467766544333333 45888887654310 0001111 222222 1345567776665 47788884
Q ss_pred ---CCCC-------C---CHH---HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhc
Q 010948 158 ---DNGY-------G---NAM---NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKES 221 (497)
Q Consensus 158 ---DtGY-------G---~~~---~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~ 221 (497)
++|+ | |.. ...+.+-.+.+|||+.|---|- ++| ||.|++++.++.
T Consensus 118 ~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdM--------MDG-----------rV~aIR~aLD~~ 178 (320)
T cd04824 118 EYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDM--------MDG-----------RVRAIKQALIQA 178 (320)
T ss_pred CCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEecccc--------ccc-----------HHHHHHHHHHHC
Confidence 2232 1 322 3444455667899988877664 333 555555555543
Q ss_pred C--CCeEEEEeccchhc--------------------------ccHHHHHHHHHHHHhcCCCEEEe-ccCCCHHHHHHHH
Q 010948 222 G--SDIVIVARTDSRQA--------------------------LSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFC 272 (497)
Q Consensus 222 g--~dfvIiARTDA~~~--------------------------~~ldeaIeRAkAY~eAGAD~IfI-eg~~s~eei~~i~ 272 (497)
| .+.-|.+-+--++. ..-.||++.+..=.+-|||+|+| |+++-.+.++++.
T Consensus 179 G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k 258 (320)
T cd04824 179 GLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTPYLDIVREAK 258 (320)
T ss_pred CCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHH
Confidence 3 35677766533210 12578999999999999999999 8899999999999
Q ss_pred HhCCCCCccc
Q 010948 273 EISPLVPKMA 282 (497)
Q Consensus 273 ~~v~~vP~~~ 282 (497)
+.+|.+|+.+
T Consensus 259 ~~~~~~Pvaa 268 (320)
T cd04824 259 DKHPDLPLAV 268 (320)
T ss_pred HhccCCCEEE
Confidence 9997677653
No 242
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.66 E-value=1.1 Score=42.71 Aligned_cols=146 Identities=20% Similarity=0.225 Sum_probs=85.2
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHH------HHHHHHHHhhcC
Q 010948 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEM------VDQGQLITQAVS 150 (497)
Q Consensus 77 ~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEm------l~~~r~I~ra~~ 150 (497)
.+.++.++.+.....++-+=-..+..|.+++- |++++|... -.+|+.|..++.=+.+ ...++++.+..+
T Consensus 4 ~t~~~v~~a~~~~~~i~~TRKt~Pg~r~l~~~---Av~~GGg~~--hR~gl~d~ili~~nHi~~~g~i~~av~~~~~~~~ 78 (169)
T PF01729_consen 4 ATRRMVDAAKGTKIRIADTRKTIPGLRPLEKY---AVLAGGGDN--HRLGLSDMILIKDNHIAFFGGIEEAVKAARQAAP 78 (169)
T ss_dssp HHHHHHHHTTTSSSEEEEGSGS-TTTHHHHHH---HHHHTTSBH--HHSSTTSSEEE-HHHHHHHSSHHHHHHHHHHHST
T ss_pred HHHHHHHHhCCCCEEEeecCCCCcccCHHHHH---HHHhcCcee--EECCCCCcEEehHHHHHHhCCHHHHHHHHHHhCC
Confidence 35567777766655556566666777777765 677776442 3789999887754433 223444444443
Q ss_pred -c-ceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEE
Q 010948 151 -I-PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (497)
Q Consensus 151 -i-PVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi 228 (497)
. +|.++.++ . +-+++..++|++.|.++-. +++ .++.+++..+..++...|.
T Consensus 79 ~~~~I~VEv~~----~----ee~~ea~~~g~d~I~lD~~---------------~~~----~~~~~v~~l~~~~~~v~ie 131 (169)
T PF01729_consen 79 EKKKIEVEVEN----L----EEAEEALEAGADIIMLDNM---------------SPE----DLKEAVEELRELNPRVKIE 131 (169)
T ss_dssp TTSEEEEEESS----H----HHHHHHHHTT-SEEEEES----------------CHH----HHHHHHHHHHHHTTTSEEE
T ss_pred CCceEEEEcCC----H----HHHHHHHHhCCCEEEecCc---------------CHH----HHHHHHHHHhhcCCcEEEE
Confidence 4 48898875 2 2345667799999999543 223 2333333323234554444
Q ss_pred EeccchhcccHHHHHHHHHHHHhcCCCEEEeccC
Q 010948 229 ARTDSRQALSLEESLRRSRAFADAGADVLFIDAL 262 (497)
Q Consensus 229 ARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~ 262 (497)
+---- .+++...|++.|+|.|.+-++
T Consensus 132 ~SGGI--------~~~ni~~ya~~gvD~isvg~~ 157 (169)
T PF01729_consen 132 ASGGI--------TLENIAEYAKTGVDVISVGSL 157 (169)
T ss_dssp EESSS--------STTTHHHHHHTT-SEEEECHH
T ss_pred EECCC--------CHHHHHHHHhcCCCEEEcChh
Confidence 32111 146788999999999998654
No 243
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.65 E-value=0.58 Score=51.41 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=58.4
Q ss_pred Cceeec-ccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHH
Q 010948 89 GVHQGP-ACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMN 166 (497)
Q Consensus 89 ~~iv~p-~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~ 166 (497)
+..++. |+=.+--|+-+.++|+|+|-++ |-+-.++..++-..+ ++.=+.+..+...++..++|||+|. |..++..
T Consensus 268 ~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~-~p~~~av~~~~~~~~~~~~~via~g--gi~~~~~ 344 (479)
T PRK07807 268 GVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAAARELGAHVWADG--GVRHPRD 344 (479)
T ss_pred CCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCc-hhHHHHHHHHHHHHHhcCCcEEecC--CCCCHHH
Confidence 445555 9999999999999999999976 333223334554433 3444455555566666789999983 3334434
Q ss_pred HHHHHHHHHHhCccEEEec
Q 010948 167 VKRTVKGYIKAGFAGIILE 185 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IE 185 (497)
+. |. ..+||++|.+-
T Consensus 345 ~~---~a-l~~ga~~v~~g 359 (479)
T PRK07807 345 VA---LA-LAAGASNVMIG 359 (479)
T ss_pred HH---HH-HHcCCCeeecc
Confidence 43 33 35899999883
No 244
>PRK06852 aldolase; Validated
Probab=92.61 E-value=7.8 Score=40.54 Aligned_cols=204 Identities=14% Similarity=0.035 Sum_probs=117.1
Q ss_pred ecccCChH-HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCC---CC----CH
Q 010948 93 GPACFDAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG---YG----NA 164 (497)
Q Consensus 93 ~p~ayDal-SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtG---YG----~~ 164 (497)
+++.+|.- .-+.+.++|++++.+. .++.. ...++. .++|+|+-.+.+ +. ++
T Consensus 55 ~~gl~dp~~~i~~~~~~g~dav~~~-~G~l~--~~~~~~------------------~~~~lIlkl~~~t~l~~~~~~~p 113 (304)
T PRK06852 55 AKDDADPEHLFRIASKAKIGVFATQ-LGLIA--RYGMDY------------------PDVPYLVKLNSKTNLVKTSQRDP 113 (304)
T ss_pred CcccCCHHHHHHHHHhcCCCEEEeC-HHHHH--hhcccc------------------CCCcEEEEECCCCCcCCcccCCc
Confidence 34666776 4467777899999988 23321 112221 146677666654 22 22
Q ss_pred H-HHHHHHHHHHHhC------ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEE--EEeccchh
Q 010948 165 M-NVKRTVKGYIKAG------FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI--VARTDSRQ 235 (497)
Q Consensus 165 ~-~V~rtVk~l~~AG------aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvI--iARTDA~~ 235 (497)
. .+.-.|+..++.| |+||.+-=-. ++. ...+++..+..+++.+++.|.++++ -.|-....
T Consensus 114 ~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~--------Gs~---~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~ 182 (304)
T PRK06852 114 LSRQLLDVEQVVEFKENSGLNILGVGYTIYL--------GSE---YESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVK 182 (304)
T ss_pred cccceecHHHHHhcCCccCCCceEEEEEEec--------CCH---HHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccC
Confidence 2 3445578888888 5566552211 111 1256888899888888888877654 24533321
Q ss_pred c-ccHHHHHHHHHHHHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCCccceeeecCCCCCCCC----HHHH-HhcCC
Q 010948 236 A-LSLEESLRRSRAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILN----PLEL-EELGF 304 (497)
Q Consensus 236 ~-~~ldeaIeRAkAY~eAGAD~IfIeg~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt----~~eL-~elGv 304 (497)
. .+.+-.---++.-+|.|||.|=+.-+ .+.+.++++++....+|++ +.+|.++.... ..+. ++.|.
T Consensus 183 ~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVv---iaGG~k~~~~e~L~~v~~ai~~aGa 259 (304)
T PRK06852 183 DEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVV---CAGGSSTDPEEFLKQLYEQIHISGA 259 (304)
T ss_pred CCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEE---EeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 1 12222333357778999999998776 5678899988876224543 44544432100 1222 23688
Q ss_pred CEEeccchHHHHHH---HHHHHHHHHHHcC
Q 010948 305 KLVAYPLSLIGVSV---RAMQDALTAIKGG 331 (497)
Q Consensus 305 ~~Vsyp~~ll~aa~---~Am~~al~~i~~g 331 (497)
+-+++|=-.|.... .+|-.++.+|-.+
T Consensus 260 ~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~ 289 (304)
T PRK06852 260 SGNATGRNIHQKPLDEAVRMCNAIYAITVE 289 (304)
T ss_pred ceeeechhhhcCCCchHHHHHHHHHHHHhC
Confidence 88888766665522 4455566666543
No 245
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=92.45 E-value=13 Score=40.08 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcC-cceEeeCCC-CCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHH
Q 010948 138 MVDQGQLITQAVS-IPVIGDGDN-GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (497)
Q Consensus 138 ml~~~r~I~ra~~-iPVIaD~Dt-GYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv 215 (497)
-...++.+++... ..++.|+-. +-|+ .-++.+.++||++||+-++. + .+...+-++.++
T Consensus 44 ~~~~i~~l~~~~~~~~ii~D~kl~d~g~-----~~v~~a~~aGAdgV~v~g~~------~--------~~~~~~~i~~a~ 104 (430)
T PRK07028 44 GMNAIRTLRKNFPDHTIVADMKTMDTGA-----IEVEMAAKAGADIVCILGLA------D--------DSTIEDAVRAAR 104 (430)
T ss_pred hHHHHHHHHHHCCCCEEEEEeeeccchH-----HHHHHHHHcCCCEEEEecCC------C--------hHHHHHHHHHHH
Confidence 3567777777654 446667322 1121 26678889999999986542 0 011111222222
Q ss_pred HHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec-c-------CCCHHHHHHHHHhCCCCCccceeeec
Q 010948 216 DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID-A-------LASKEEMKAFCEISPLVPKMANMLEG 287 (497)
Q Consensus 216 ~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe-g-------~~s~eei~~i~~~v~~vP~~~N~l~~ 287 (497)
+.|..+.+-.-+- ...+++++.+.++|+|.|.+. + ....+.++++.+.++ +|.. ..
T Consensus 105 ----~~G~~~~~g~~s~-------~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~-iPI~----a~ 168 (430)
T PRK07028 105 ----KYGVRLMADLINV-------PDPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVS-IPIA----VA 168 (430)
T ss_pred ----HcCCEEEEEecCC-------CCHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCC-CcEE----EE
Confidence 2344443311121 112467888889999999653 2 122467777776654 4532 22
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 288 GGKTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 288 ~g~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
+|-++ -+..++.+.|+..++.+..++.+
T Consensus 169 GGI~~-~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 169 GGLDA-ETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred CCCCH-HHHHHHHHcCCCEEEEChHHcCC
Confidence 34322 35678888999999999988764
No 246
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=92.44 E-value=6.4 Score=39.05 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=89.8
Q ss_pred CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 010948 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (497)
Q Consensus 150 ~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA 229 (497)
.+++|.|-...+..... .+.+++..+.|+..+++=++.. +.+++.+..+.+++.+++.+..|+|+.
T Consensus 7 ~lylvt~~~~~~~~~~~-~~~ve~al~~Gv~~vQlR~K~~-------------~~~~~~~~a~~~~~lc~~~~v~liINd 72 (211)
T COG0352 7 RLYLVTDRPLIYDGVDL-LEWVEAALKGGVTAVQLREKDL-------------SDEEYLALAEKLRALCQKYGVPLIIND 72 (211)
T ss_pred ceEEEcCCccccccchh-HHHHHHHHhCCCeEEEEecCCC-------------ChHHHHHHHHHHHHHHHHhCCeEEecC
Confidence 36677777666643322 7888899999999999988741 112333333344444444468899999
Q ss_pred eccchh---c-------cc--HHH----------------HHHHHHHHHhcCCCEEEeccC-----------CCHHHHHH
Q 010948 230 RTDSRQ---A-------LS--LEE----------------SLRRSRAFADAGADVLFIDAL-----------ASKEEMKA 270 (497)
Q Consensus 230 RTDA~~---~-------~~--lde----------------aIeRAkAY~eAGAD~IfIeg~-----------~s~eei~~ 270 (497)
|.|-.. + .+ +.+ -++.+...++.|||.|++-.+ ...+-++.
T Consensus 73 ~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~ 152 (211)
T COG0352 73 RVDLALAVGADGVHLGQDDMPLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLRE 152 (211)
T ss_pred cHHHHHhCCCCEEEcCCcccchHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHH
Confidence 988632 0 00 111 245566677889999987432 12456666
Q ss_pred HHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 271 FCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 271 i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
+.+..+ +|.. .+ ||-+ .-+..++.+.|+..|..=...+.
T Consensus 153 ~~~~~~-iP~v--AI--GGi~-~~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 153 IRELVN-IPVV--AI--GGIN-LENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHhCC-CCEE--EE--cCCC-HHHHHHHHHhCCCeEEehhHhhc
Confidence 666554 5632 22 3432 24678999999998877655554
No 247
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=92.40 E-value=0.9 Score=46.85 Aligned_cols=67 Identities=25% Similarity=0.404 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 010948 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
++.+..+.+||||.|+++.++ ++++++.++... +..-+ .++..|..-.-++.++++.||..+|.+..
T Consensus 198 le~~~eAl~agaDiImLDNm~-~e~~~~av~~l~-~~~~~-~lEaSGgIt~~ni~~yA~tGVD~IS~gal 264 (280)
T COG0157 198 LEEAEEALEAGADIIMLDNMS-PEELKEAVKLLG-LAGRA-LLEASGGITLENIREYAETGVDVISVGAL 264 (280)
T ss_pred HHHHHHHHHcCCCEEEecCCC-HHHHHHHHHHhc-cCCce-EEEEeCCCCHHHHHHHhhcCCCEEEeCcc
Confidence 466677788999999999875 589999998742 22211 23332323235789999999999998753
No 248
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=92.39 E-value=0.89 Score=46.52 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=70.2
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch-hcccHHHHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRRSR 247 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~-~~~~ldeaIeRAk 247 (497)
..++.+.++|++.|-+-|...--.-||. ..--|+.++|+---+|.+++. +..+|++----. -..+.+++++-|.
T Consensus 26 ~~A~~~d~agvd~lLVGDSlgmvv~G~~-sTl~Vsl~~mi~ht~aV~Rga----~~~~vv~DmPF~sy~~s~~~a~~nA~ 100 (268)
T COG0413 26 PFAKLFDQAGVDVLLVGDSLGMVVLGYD-STLPVTLEDMIYHTKAVRRGA----PNAFVVADLPFGSYEVSPEQALKNAA 100 (268)
T ss_pred HHHhhhhhcCCcEEEEeccHHHHHcCCC-CcceecHHHHHHHHHHHHhcC----CCeeEEeCCCCcccCCCHHHHHHHHH
Confidence 4567778899999999997643334553 234678999998888877775 455666432111 1236899999988
Q ss_pred HHHh-cCCCEEEeccCCC-HHHHHHHHHh
Q 010948 248 AFAD-AGADVLFIDALAS-KEEMKAFCEI 274 (497)
Q Consensus 248 AY~e-AGAD~IfIeg~~s-~eei~~i~~~ 274 (497)
.+.+ +|||+|.+|+-.. .+.++++++.
T Consensus 101 r~~ke~gA~aVKlEGG~~~~~~i~~L~~~ 129 (268)
T COG0413 101 RLMKEAGADAVKLEGGEEMAETIKRLTER 129 (268)
T ss_pred HHHHHhCCCEEEEcCCHHHHHHHHHHHHc
Confidence 8776 9999999998532 3566666664
No 249
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=92.35 E-value=0.93 Score=46.76 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=79.3
Q ss_pred eeecccCChHHH----HHHHHhCCcEEEec-chhhhh-hhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCC-
Q 010948 91 HQGPACFDALSA----KLVEKSGFSFCFTS-GFSISA-ARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN- 163 (497)
Q Consensus 91 iv~p~ayDalSA----riae~aGfdAI~vS-G~avSa-s~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~- 163 (497)
++-.+.-|+-.. ++++..|++.|=+= |....- ...|+=..-+-..+.+.+.++.+.+++++||.+-+-.|+.+
T Consensus 57 ~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~ 136 (309)
T PF01207_consen 57 IVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDS 136 (309)
T ss_dssp EEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--
T ss_pred eEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccc
Confidence 334455565443 44444577777544 211110 12233333345667788888999999999999999999984
Q ss_pred HHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHH
Q 010948 164 AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESL 243 (497)
Q Consensus 164 ~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaI 243 (497)
..++.+.++.+.++|+++|.|-.-+. +..+.+ ... -+.+.+| +++ ..+.|++--|-.. .+++
T Consensus 137 ~~~~~~~~~~l~~~G~~~i~vH~Rt~--~q~~~~---~a~-w~~i~~i---~~~-----~~ipvi~NGdI~s---~~d~- 198 (309)
T PF01207_consen 137 PEETIEFARILEDAGVSAITVHGRTR--KQRYKG---PAD-WEAIAEI---KEA-----LPIPVIANGDIFS---PEDA- 198 (309)
T ss_dssp CHHHHHHHHHHHHTT--EEEEECS-T--TCCCTS-------HHHHHHC---HHC------TSEEEEESS--S---HHHH-
T ss_pred hhHHHHHHHHhhhcccceEEEecCch--hhcCCc---ccc-hHHHHHH---hhc-----ccceeEEcCccCC---HHHH-
Confidence 57899999999999999999977541 112211 112 2333443 333 2356666656543 2333
Q ss_pred HHHHHHH-hcCCCEEEe
Q 010948 244 RRSRAFA-DAGADVLFI 259 (497)
Q Consensus 244 eRAkAY~-eAGAD~IfI 259 (497)
+.+. ..|||.|++
T Consensus 199 ---~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 199 ---ERMLEQTGADGVMI 212 (309)
T ss_dssp ---HHHCCCH-SSEEEE
T ss_pred ---HHHHHhcCCcEEEE
Confidence 3333 349999998
No 250
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=92.33 E-value=3.4 Score=42.91 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=81.8
Q ss_pred HHHHHHHhCCcEEEec-chhhhh-hhcccCCCCCCCHHHHHHHHHHHHhhc--CcceEeeCCCCCCCHHHHHHHHHHHHH
Q 010948 101 SAKLVEKSGFSFCFTS-GFSISA-ARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (497)
Q Consensus 101 SAriae~aGfdAI~vS-G~avSa-s~lG~PD~g~ltldEml~~~r~I~ra~--~iPVIaD~DtGYG~~~~V~rtVk~l~~ 176 (497)
.|+.+++.|||.|=+= |.-.-- ...|.=..-.-..+-+.+.++.|.+++ ++||.+=+--|+-+.....+.++.+++
T Consensus 80 aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~ 159 (312)
T PRK10550 80 NAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQ 159 (312)
T ss_pred HHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHh
Confidence 4677788898887654 211100 011110001123344566677777776 499999988887554446788899999
Q ss_pred hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHH-HhcCCC
Q 010948 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF-ADAGAD 255 (497)
Q Consensus 177 AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY-~eAGAD 255 (497)
+|++.|++-..+. .-+.. |.. +.. +.+.+|+. + .+.+++.++.-.. .+.++.+ .+.|||
T Consensus 160 ~Gvd~i~Vh~Rt~--~~~y~-g~~-~~~-~~i~~ik~---~---~~iPVi~nGdI~t---------~~da~~~l~~~g~D 219 (312)
T PRK10550 160 AGATELVVHGRTK--EDGYR-AEH-INW-QAIGEIRQ---R---LTIPVIANGEIWD---------WQSAQQCMAITGCD 219 (312)
T ss_pred cCCCEEEECCCCC--ccCCC-CCc-ccH-HHHHHHHh---h---cCCcEEEeCCcCC---------HHHHHHHHhccCCC
Confidence 9999999965431 11111 111 122 44555443 2 1234444444322 1333333 358999
Q ss_pred EEEec--cCCCHHHHHHH
Q 010948 256 VLFID--ALASKEEMKAF 271 (497)
Q Consensus 256 ~IfIe--g~~s~eei~~i 271 (497)
+|+|- .+.++..++++
T Consensus 220 gVmiGRg~l~nP~lf~~~ 237 (312)
T PRK10550 220 AVMIGRGALNIPNLSRVV 237 (312)
T ss_pred EEEEcHHhHhCcHHHHHh
Confidence 99983 23444444443
No 251
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=92.23 E-value=5.1 Score=40.98 Aligned_cols=133 Identities=15% Similarity=0.043 Sum_probs=84.3
Q ss_pred HHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhh---cCcceEeeCCCCCC-----CHHHHHHHH
Q 010948 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQA---VSIPVIGDGDNGYG-----NAMNVKRTV 171 (497)
Q Consensus 101 SAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra---~~iPVIaD~DtGYG-----~~~~V~rtV 171 (497)
....+-++|++.|-+. +.+-. +-.-- -..+.+|.++.++.+.+. .++.|.+.+++ |+ ++..+.+.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~---h~~~~-~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~r~~~~~~~~~~ 153 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLK---HCTEQ-LRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGMRDSPDYVFQLV 153 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHH---HHHHH-HCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCCcCCHHHHHHHH
Confidence 3555667799987766 22211 11111 125788888877766543 35777777776 44 467899999
Q ss_pred HHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHh
Q 010948 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (497)
Q Consensus 172 k~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~e 251 (497)
+.+.++|+.-|.|-|.. | +..++++.+.+++.++.. ++..|-..+ -+++--++.-+.+..+
T Consensus 154 ~~~~~~G~~~i~l~DT~-----G------~~~P~~v~~l~~~l~~~~----~~~~i~~H~----Hnd~Gla~AN~laA~~ 214 (280)
T cd07945 154 DFLSDLPIKRIMLPDTL-----G------ILSPFETYTYISDMVKRY----PNLHFDFHA----HNDYDLAVANVLAAVK 214 (280)
T ss_pred HHHHHcCCCEEEecCCC-----C------CCCHHHHHHHHHHHHhhC----CCCeEEEEe----CCCCCHHHHHHHHHHH
Confidence 99999999999999986 3 334556667776666432 233332222 1123346677778889
Q ss_pred cCCCEE
Q 010948 252 AGADVL 257 (497)
Q Consensus 252 AGAD~I 257 (497)
+||+.|
T Consensus 215 aGa~~v 220 (280)
T cd07945 215 AGIKGL 220 (280)
T ss_pred hCCCEE
Confidence 999965
No 252
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.23 E-value=0.81 Score=50.27 Aligned_cols=100 Identities=13% Similarity=0.183 Sum_probs=62.6
Q ss_pred HHHHHHhC-CC-ceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEee
Q 010948 80 SLRQILEL-PG-VHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (497)
Q Consensus 80 ~Lr~ll~~-~~-~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD 156 (497)
.++++++. ++ ++++=|+-+.-.|+.+.++|+|+|-++ |.+...+.-++-+.+.-+++-.++.++.. +..++|||+|
T Consensus 256 ~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~-~~~~~~viad 334 (475)
T TIGR01303 256 AIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEA-RKLGGHVWAD 334 (475)
T ss_pred HHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHH-HHcCCcEEEe
Confidence 34444443 23 344445999999999999999999988 33333333455554544455555444444 3348999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEecC
Q 010948 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 157 ~DtGYG~~~~V~rtVk~l~~AGaAGI~IED 186 (497)
. |+-++.++. |.+ .+||++|.+-.
T Consensus 335 G--gi~~~~di~---kal-a~GA~~vm~g~ 358 (475)
T TIGR01303 335 G--GVRHPRDVA---LAL-AAGASNVMVGS 358 (475)
T ss_pred C--CCCCHHHHH---HHH-HcCCCEEeech
Confidence 3 444554444 333 58999998833
No 253
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.16 E-value=3.2 Score=43.07 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=84.1
Q ss_pred HHHHHHHHhCCcEEEecchhhhhhhccc-CCCCCCCHHHHHHHHHHHHhhcC-cc--eEeeCCC-CCCCHHHHHHHHHHH
Q 010948 100 LSAKLVEKSGFSFCFTSGFSISAARLAL-PDTGFISYGEMVDQGQLITQAVS-IP--VIGDGDN-GYGNAMNVKRTVKGY 174 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG~avSas~lG~-PD~g~ltldEml~~~r~I~ra~~-iP--VIaD~Dt-GYG~~~~V~rtVk~l 174 (497)
-+.+.++++|.-++-+==.... -..|+ |...+++.+||++.++.+.++.. .+ |++=.|. +-++...+.+-.+.|
T Consensus 97 rtV~~~~~aG~agi~iEDq~~p-k~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY 175 (289)
T COG2513 97 RTVRELEQAGAAGIHIEDQVGP-KRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHHcCcceeeeeecccc-hhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHH
Confidence 3557788899888877622211 23455 78899999999999999988763 33 4444444 344544555556899
Q ss_pred HHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCC
Q 010948 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGA 254 (497)
Q Consensus 175 ~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGA 254 (497)
++|||++|..|.-. +.+ .+.++..++. .++.+|--. - .... +-....++++|.
T Consensus 176 ~eAGAD~if~~al~--------------~~e-~i~~f~~av~------~pl~~N~t~-~-g~tp----~~~~~~L~~~Gv 228 (289)
T COG2513 176 VEAGADAIFPEALT--------------DLE-EIRAFAEAVP------VPLPANITE-F-GKTP----LLTVAELAELGV 228 (289)
T ss_pred HHcCCcEEccccCC--------------CHH-HHHHHHHhcC------CCeeeEeec-c-CCCC----CcCHHHHHhcCc
Confidence 99999999998742 333 3334433332 234444211 1 1101 112467889999
Q ss_pred CEEEeccCC
Q 010948 255 DVLFIDALA 263 (497)
Q Consensus 255 D~IfIeg~~ 263 (497)
..|+.+...
T Consensus 229 ~~V~~~~~~ 237 (289)
T COG2513 229 KRVSYGLTA 237 (289)
T ss_pred eEEEECcHH
Confidence 999887543
No 254
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.11 E-value=0.51 Score=45.00 Aligned_cols=90 Identities=24% Similarity=0.389 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCC-eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHH---hCCCCCccceeee
Q 010948 211 IKAAVDARKESGSD-IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCE---ISPLVPKMANMLE 286 (497)
Q Consensus 211 IrAAv~Ar~~~g~d-fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~---~v~~vP~~~N~l~ 286 (497)
|..++.+.++..+. ..|.-.++. + +.+..+.++|+|.|.++.. ++++++++++ ..+ |. +-+..
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~-----~----ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~--~~-v~ie~ 132 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVEN-----L----EEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELN--PR-VKIEA 132 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESS-----H----HHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHT--TT-SEEEE
T ss_pred HHHHHHHHHHhCCCCceEEEEcCC-----H----HHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcC--Cc-EEEEE
Confidence 44444443332233 336656554 2 3345566799999999987 4588888887 333 22 22223
Q ss_pred cCCCCCCCCHHHHHhcCCCEEeccchHH
Q 010948 287 GGGKTPILNPLELEELGFKLVAYPLSLI 314 (497)
Q Consensus 287 ~~g~tP~lt~~eL~elGv~~Vsyp~~ll 314 (497)
.||-+ .-++.++++.|+..++.+....
T Consensus 133 SGGI~-~~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 133 SGGIT-LENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp ESSSS-TTTHHHHHHTT-SEEEECHHHH
T ss_pred ECCCC-HHHHHHHHhcCCCEEEcChhhc
Confidence 33433 4689999999999999876543
No 255
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=92.10 E-value=2.6 Score=48.62 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCccEEEecCCC-----------CCCCCCCCCCccccCHHHH-HHHHHHHHHHHHhcCCCeEEEEeccch
Q 010948 167 VKRTVKGYIKAGFAGIILEDQV-----------SPKGCGHTRGRKVVSREEA-VMRIKAAVDARKESGSDIVIVARTDSR 234 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~-----------~pKrCGH~~gk~lvp~ee~-~~KIrAAv~Ar~~~g~dfvIiARTDA~ 234 (497)
..+++++.+++|++||.|--.- ..||...-+| .+-..-.+ .+-|++++++ .|+||.|..|.-+.
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~---~~~~~~v~~ri~~~ 628 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGG-SLENRLRYPLEVFRAVRAV---WPAEKPMSVRISAH 628 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHhHHHHHHHHHHHHh---cCCCCeeEEEEccc
Confidence 4456677788999999996541 1344433333 22211122 2222333332 25688888886542
Q ss_pred ----hcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 235 ----QALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 235 ----~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
....++|+++-++.++++|+|.|-|.
T Consensus 629 ~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 629 DWVEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred cccCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 12458999999999999999999886
No 256
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=92.03 E-value=1.4 Score=53.68 Aligned_cols=128 Identities=22% Similarity=0.328 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHhhcCcceEeeCCCC-------CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHH
Q 010948 134 SYGEMVDQGQLITQAVSIPVIGDGDNG-------YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSRE 205 (497)
Q Consensus 134 tldEml~~~r~I~ra~~iPVIaD~DtG-------YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~e 205 (497)
..++|..+++.+.+.++.||+|=.-.| |- ++....+.++++.+.|. ++|=++ .||-+.
T Consensus 253 GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~--v~IIGG----CCGTtP-------- 318 (1229)
T PRK09490 253 GADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESGF--LNIVGG----CCGTTP-------- 318 (1229)
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC--CCEEEe----cCCCCH--------
Confidence 367899999999888889998654445 33 56778888999998774 455566 588543
Q ss_pred HHHHHHHHHHHHHH---------------------hcCCCeEEEE-eccchh---------cccHHHHHHHHHHHHhcCC
Q 010948 206 EAVMRIKAAVDARK---------------------ESGSDIVIVA-RTDSRQ---------ALSLEESLRRSRAFADAGA 254 (497)
Q Consensus 206 e~~~KIrAAv~Ar~---------------------~~g~dfvIiA-RTDA~~---------~~~ldeaIeRAkAY~eAGA 254 (497)
++++.|+.+++... ..+..|++++ |+...+ ..++++++++|+...++||
T Consensus 319 eHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA 398 (1229)
T PRK09490 319 EHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQVENGA 398 (1229)
T ss_pred HHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCC
Confidence 55666666554211 0012366776 776642 3578999999999999999
Q ss_pred CEEEecc----CCCHHHHHHHHHhC
Q 010948 255 DVLFIDA----LASKEEMKAFCEIS 275 (497)
Q Consensus 255 D~IfIeg----~~s~eei~~i~~~v 275 (497)
|+|=|-. +...++++++...+
T Consensus 399 ~iIDVn~g~~~id~~eem~rvv~~i 423 (1229)
T PRK09490 399 QIIDINMDEGMLDSEAAMVRFLNLI 423 (1229)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHH
Confidence 9997632 34467888877543
No 257
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=91.99 E-value=1.4 Score=42.64 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=58.5
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCC
Q 010948 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (497)
Q Consensus 81 Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtG 160 (497)
++++.+.+...+++++++.--+..++++|++.+.++..+.. .....+....++.++.+.+.+++||++. .|
T Consensus 115 i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t-------~~~~~~~~~~~~~l~~i~~~~~ipvia~--GG 185 (219)
T cd04729 115 IKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYT-------EETAKTEDPDFELLKELRKALGIPVIAE--GR 185 (219)
T ss_pred HHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCcccc-------ccccCCCCCCHHHHHHHHHhcCCCEEEe--CC
Confidence 33444444477788999999999999999999865432221 1110111112356667777778999985 35
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEec
Q 010948 161 YGNAMNVKRTVKGYIKAGFAGIILE 185 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AGaAGI~IE 185 (497)
..++.+ ++++.++||+||.+=
T Consensus 186 I~~~~~----~~~~l~~GadgV~vG 206 (219)
T cd04729 186 INSPEQ----AAKALELGADAVVVG 206 (219)
T ss_pred CCCHHH----HHHHHHCCCCEEEEc
Confidence 555544 456667899999883
No 258
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=91.96 E-value=3.1 Score=41.04 Aligned_cols=172 Identities=17% Similarity=0.162 Sum_probs=97.8
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccE
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAG 181 (497)
|+.+.++|.|++++||. .| ++.+.+.+.+++|.+.+++||+. .+ |+...+. -+|++
T Consensus 17 a~~v~~~gtDaI~VGGS------~g------vt~~~~~~~v~~ik~~~~lPvil-fp---~~~~~i~--------~~aD~ 72 (205)
T TIGR01769 17 AKNAKDAGTDAIMVGGS------LG------IVESNLDQTVKKIKKITNLPVIL-FP---GNVNGLS--------RYADA 72 (205)
T ss_pred HHHHHhcCCCEEEEcCc------CC------CCHHHHHHHHHHHHhhcCCCEEE-EC---CCccccC--------cCCCE
Confidence 45677899999999973 12 47788888888888888999998 22 3333333 36777
Q ss_pred EEecCCCCCCCCCCCCCccccCHH-HHHHHHHHHHHHHHh-cCCCeEEEE------e-ccch--hcccHHHHHHHHHHHH
Q 010948 182 IILEDQVSPKGCGHTRGRKVVSRE-EAVMRIKAAVDARKE-SGSDIVIVA------R-TDSR--QALSLEESLRRSRAFA 250 (497)
Q Consensus 182 I~IEDq~~pKrCGH~~gk~lvp~e-e~~~KIrAAv~Ar~~-~g~dfvIiA------R-TDA~--~~~~ldeaIeRAkAY~ 250 (497)
+.+=-=.. ...-.-++..+ +.+..| ++-..+ ....++|+. + |++. .....|++..-|.+.+
T Consensus 73 ~~~~slln-----s~~~~~i~g~~~~~~~~~---~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~ 144 (205)
T TIGR01769 73 VFFMSLLN-----SADTYFIVGAQILGAITI---LKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAK 144 (205)
T ss_pred EEEEEeec-----CCCcchhhhHHHHHHHHH---HHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHH
Confidence 76633110 00101111111 111111 111111 111344431 1 2222 1246788888899999
Q ss_pred hcCCCEEEeccC------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEecc
Q 010948 251 DAGADVLFIDAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (497)
Q Consensus 251 eAGAD~IfIeg~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp 310 (497)
..|++.||++.. .+.+.++++.+... +|+. + ++|-...-..+++.+.|+..|+.|
T Consensus 145 ~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~-~Pv~---v-GGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 145 YFGMKWVYLEAGSGASYPVNPETISLVKKASG-IPLI---V-GGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhC-CCEE---E-eCCCCCHHHHHHHHHcCCCEEEeC
Confidence 999999999874 35678888888763 5543 2 333211123455556688888764
No 259
>TIGR00035 asp_race aspartate racemase.
Probab=91.92 E-value=1.5 Score=42.97 Aligned_cols=101 Identities=15% Similarity=0.188 Sum_probs=65.6
Q ss_pred ccCHHHHHHHHHHHHHHHHh-cCCCeEEEEeccch------hc----ccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHH
Q 010948 201 VVSREEAVMRIKAAVDARKE-SGSDIVIVARTDSR------QA----LSLEESLRRSRAFADAGADVLFIDALASKEEMK 269 (497)
Q Consensus 201 lvp~ee~~~KIrAAv~Ar~~-~g~dfvIiARTDA~------~~----~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~ 269 (497)
-....++.+||.....+..+ ...+.++.-..+-. .. .......+-++.++++|||+|++.|-+.-..+.
T Consensus 12 p~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~ 91 (229)
T TIGR00035 12 PLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFIIMPCNTAHKFAE 91 (229)
T ss_pred HHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEEECCccHHHHHH
Confidence 34556788888877776532 12456666655441 11 123445666777889999999999976544466
Q ss_pred HHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEecc
Q 010948 270 AFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (497)
Q Consensus 270 ~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp 310 (497)
++.+.++ +|. ++|++. +.+.+++.|.++|-.=
T Consensus 92 ~l~~~~~-iPi-i~i~~~-------~~~~~~~~~~~~VgvL 123 (229)
T TIGR00035 92 DIQKAIG-IPL-ISMIEE-------TAEAVKEDGVKKAGLL 123 (229)
T ss_pred HHHHhCC-CCE-echHHH-------HHHHHHHcCCCEEEEE
Confidence 7767665 664 566542 5678888898888653
No 260
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=91.90 E-value=4.7 Score=41.09 Aligned_cols=109 Identities=14% Similarity=0.252 Sum_probs=72.6
Q ss_pred cCcceEeeCCCCCCCH-HHHHHHHHHHH-HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeE
Q 010948 149 VSIPVIGDGDNGYGNA-MNVKRTVKGYI-KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV 226 (497)
Q Consensus 149 ~~iPVIaD~DtGYG~~-~~V~rtVk~l~-~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfv 226 (497)
.+.|||+|+=.| +. ..+...++.+. ..|+++|.+--- +| .+-+++++++.++.+..++
T Consensus 85 ~g~~VilD~K~~--DIpnTv~~~a~a~~~~~g~D~vTvh~~-----~G-------------~d~l~~~~~~~~~~~~~v~ 144 (261)
T TIGR02127 85 LGLPVLADVKRG--DIGSTASAYAKAWLGHLHADALTVSPY-----LG-------------LDSLRPFLEYARANGAGIF 144 (261)
T ss_pred CCCeEEEEeecc--ChHHHHHHHHHHHHhhcCCCEEEECCc-----CC-------------HHHHHHHHHHHhhcCCEEE
Confidence 478999998876 53 33455666666 689999988432 12 2234445554443345788
Q ss_pred EEEeccc-h----hc-------ccHHHHHHHHHHHHhc----CCCEEEeccCCCHHHHHHHHHhCCCC
Q 010948 227 IVARTDS-R----QA-------LSLEESLRRSRAFADA----GADVLFIDALASKEEMKAFCEISPLV 278 (497)
Q Consensus 227 IiARTDA-~----~~-------~~ldeaIeRAkAY~eA----GAD~IfIeg~~s~eei~~i~~~v~~v 278 (497)
|.++|-. . +. .-.+..+++++.+.++ |.|.+++.+ ++++|++++.+..|..
T Consensus 145 VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gA-T~p~e~~~iR~~~~~~ 211 (261)
T TIGR02127 145 VLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVVGA-TSPGDLLRLRIEMPTA 211 (261)
T ss_pred EEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEECC-CCHHHHHHHHHhCCCC
Confidence 8888865 1 11 1246778888888777 899999976 4578999998876543
No 261
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=91.87 E-value=0.96 Score=46.76 Aligned_cols=92 Identities=23% Similarity=0.276 Sum_probs=60.6
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCC
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~D 158 (497)
+.++++++. +..+++.+.+.--|+.++++|+|+|.+.|... -|+. +..+ .......+++.+++|||+...
T Consensus 100 ~~i~~lk~~-g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~ea----gGh~--g~~~---~~~ll~~v~~~~~iPviaaGG 169 (307)
T TIGR03151 100 KYIPRLKEN-GVKVIPVVASVALAKRMEKAGADAVIAEGMES----GGHI--GELT---TMALVPQVVDAVSIPVIAAGG 169 (307)
T ss_pred HHHHHHHHc-CCEEEEEcCCHHHHHHHHHcCCCEEEEECccc----CCCC--CCCc---HHHHHHHHHHHhCCCEEEECC
Confidence 344554444 56778889999999999999999999987632 2442 1122 134455666777899999743
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEecC
Q 010948 159 NGYGNAMNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 159 tGYG~~~~V~rtVk~l~~AGaAGI~IED 186 (497)
.++...+. .+.+.||+||.+=-
T Consensus 170 --I~~~~~~~----~al~~GA~gV~iGt 191 (307)
T TIGR03151 170 --IADGRGMA----AAFALGAEAVQMGT 191 (307)
T ss_pred --CCCHHHHH----HHHHcCCCEeecch
Confidence 33443333 33357999999833
No 262
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=91.86 E-value=2.9 Score=41.66 Aligned_cols=105 Identities=24% Similarity=0.244 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccC-----------HHHHHHHHHHHHHHHHhcCCCeEE
Q 010948 159 NGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVS-----------REEAVMRIKAAVDARKESGSDIVI 227 (497)
Q Consensus 159 tGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp-----------~ee~~~KIrAAv~Ar~~~g~dfvI 227 (497)
.||-+..+..+.++.++++||+.++|.= |-.-..++|..+.. .+...+-++..+... ..++.+
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~i---PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~---~~pv~l 81 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGI---PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN---TIPIVL 81 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECC---CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC---CCCEEE
Confidence 4777778889999999999999999961 11111223322211 122333333333221 235555
Q ss_pred EEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHH
Q 010948 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCE 273 (497)
Q Consensus 228 iARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~ 273 (497)
+....-.-..|++.-++ .+.++|||++.++-++- |++.++.+
T Consensus 82 m~y~n~~~~~G~~~fi~---~~~~aG~~giiipDl~~-ee~~~~~~ 123 (242)
T cd04724 82 MGYYNPILQYGLERFLR---DAKEAGVDGLIIPDLPP-EEAEEFRE 123 (242)
T ss_pred EEecCHHHHhCHHHHHH---HHHHCCCcEEEECCCCH-HHHHHHHH
Confidence 55544333445665554 46689999999987764 45555553
No 263
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.86 E-value=4.1 Score=42.46 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=55.0
Q ss_pred HHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 102 AKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 102 Ariae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
+++++..+.+++.+. .... .+..|.. .-+++.+++.++.+++.+++||++= ..|+|.. .+.++.+.++|++
T Consensus 133 ~~~i~~~~adalel~l~~~q---~~~~~~~-~~df~~~~~~i~~l~~~~~vPVivK-~~g~g~s---~~~a~~l~~~Gvd 204 (326)
T cd02811 133 RRAVEMIEADALAIHLNPLQ---EAVQPEG-DRDFRGWLERIEELVKALSVPVIVK-EVGFGIS---RETAKRLADAGVK 204 (326)
T ss_pred HHHHHhcCCCcEEEeCcchH---hhcCCCC-CcCHHHHHHHHHHHHHhcCCCEEEE-ecCCCCC---HHHHHHHHHcCCC
Confidence 456667788888875 2211 1344442 2357778899999999999999985 3566643 4677889999999
Q ss_pred EEEecC
Q 010948 181 GIILED 186 (497)
Q Consensus 181 GI~IED 186 (497)
+|.+-.
T Consensus 205 ~I~vsG 210 (326)
T cd02811 205 AIDVAG 210 (326)
T ss_pred EEEECC
Confidence 999944
No 264
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.84 E-value=9.5 Score=38.67 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=92.1
Q ss_pred eeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHh---hcCcceEeeCCCCCCC-HH
Q 010948 91 HQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVIGDGDNGYGN-AM 165 (497)
Q Consensus 91 iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~r---a~~iPVIaD~DtGYG~-~~ 165 (497)
+......+.-....+.++|++.|-+. +.+-. +-..- ...+.+|.++.+..+.+ ..++.|.+.+++.|+. +.
T Consensus 66 v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~---~~~~~-~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~ 141 (262)
T cd07948 66 ILTHIRCHMDDARIAVETGVDGVDLVFGTSPF---LREAS-HGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLV 141 (262)
T ss_pred EEEEecCCHHHHHHHHHcCcCEEEEEEecCHH---HHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHH
Confidence 44444555556677778999987765 22111 11111 23677887777765544 3468999999999885 57
Q ss_pred HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHH
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeR 245 (497)
.+.+.++++.++|+..|.|-|.. | +..++++.+.++++++. .+.++-+=... .+--++.-
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~Dt~-----G------~~~P~~v~~~~~~~~~~---~~~~i~~H~Hn------~~Gla~an 201 (262)
T cd07948 142 DLLRVYRAVDKLGVNRVGIADTV-----G------IATPRQVYELVRTLRGV---VSCDIEFHGHN------DTGCAIAN 201 (262)
T ss_pred HHHHHHHHHHHcCCCEEEECCcC-----C------CCCHHHHHHHHHHHHHh---cCCeEEEEECC------CCChHHHH
Confidence 89999999999999999999976 3 33455666666666543 22233222222 22345667
Q ss_pred HHHHHhcCCCEE
Q 010948 246 SRAFADAGADVL 257 (497)
Q Consensus 246 AkAY~eAGAD~I 257 (497)
+.+..++||+.|
T Consensus 202 ~~~a~~aG~~~v 213 (262)
T cd07948 202 AYAALEAGATHI 213 (262)
T ss_pred HHHHHHhCCCEE
Confidence 777789999954
No 265
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.80 E-value=14 Score=39.10 Aligned_cols=154 Identities=15% Similarity=0.078 Sum_probs=95.6
Q ss_pred HHHHHHHHhCC--CceeecccCChHHHHHHHHhCCcEEEecc-hhh--hhhhcccCCCCCCCHHHHHHHHHHHHh---hc
Q 010948 78 AKSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTSG-FSI--SAARLALPDTGFISYGEMVDQGQLITQ---AV 149 (497)
Q Consensus 78 a~~Lr~ll~~~--~~iv~p~ayDalSAriae~aGfdAI~vSG-~av--Sas~lG~PD~g~ltldEml~~~r~I~r---a~ 149 (497)
.+.++++.+.. -.+.+.+-.+.-....+.++|++.+.+.. .+- ....++ .+.+|+++.+....+ ..
T Consensus 52 ~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~e~l~~~~~~i~~ak~~ 125 (365)
T TIGR02660 52 RAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLR------KDRAWVLERLARLVSFARDR 125 (365)
T ss_pred HHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC------cCHHHHHHHHHHHHHHHHhC
Confidence 35566665442 23444443444445666678998877662 111 001122 567777766554433 34
Q ss_pred CcceEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEE
Q 010948 150 SIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (497)
Q Consensus 150 ~iPVIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi 228 (497)
+..|.+.+++++- ++..+.+.++.+.++|+..|.|-|.. | +..++++.+.|+++++.. +..+-+=
T Consensus 126 g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~-----G------~~~P~~v~~lv~~l~~~~---~v~l~~H 191 (365)
T TIGR02660 126 GLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTV-----G------ILDPFSTYELVRALRQAV---DLPLEMH 191 (365)
T ss_pred CCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccC-----C------CCCHHHHHHHHHHHHHhc---CCeEEEE
Confidence 6778888888754 57889999999999999999999975 3 334567777777766542 2222222
Q ss_pred EeccchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 229 ARTDSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 229 ARTDA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
.. +++--|+.-+.+..+|||+.|
T Consensus 192 ~H------Nd~GlA~ANalaA~~aGa~~v 214 (365)
T TIGR02660 192 AH------NDLGMATANTLAAVRAGATHV 214 (365)
T ss_pred ec------CCCChHHHHHHHHHHhCCCEE
Confidence 22 233446677778889999965
No 266
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.79 E-value=3.8 Score=42.77 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=75.7
Q ss_pred cceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010948 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (497)
Q Consensus 151 iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiAR 230 (497)
+|+-+= .|.++++.+.+.++++.+.|...+||-=+.. -+..++. -+.++-+++|++++++ +|+++.| |
T Consensus 113 i~~~~~--~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~---~~~~~~~--~~~~~D~~~i~avr~~---~g~~~~l--~ 180 (352)
T cd03325 113 VRVYSW--IGGDRPSDVAEAARARREAGFTAVKMNATEE---LQWIDTS--KKVDAAVERVAALREA---VGPDIDI--G 180 (352)
T ss_pred eEEEEe--CCCCCHHHHHHHHHHHHHcCCCEEEecCCCC---cccCCCH--HHHHHHHHHHHHHHHh---hCCCCEE--E
Confidence 555432 1334666677778888889999999932110 0000000 1234457788887766 3666655 6
Q ss_pred ccchhcccHHHHHHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhCCCCCcc
Q 010948 231 TDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 231 TDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v~~vP~~ 281 (497)
.|+....++++|++.++++.+.| ..|+|-+ .+.+.++++.+..+ +|..
T Consensus 181 vDaN~~~~~~~A~~~~~~l~~~~--i~~iEeP~~~~d~~~~~~L~~~~~-~pia 231 (352)
T cd03325 181 VDFHGRVSKPMAKDLAKELEPYR--LLFIEEPVLPENVEALAEIAARTT-IPIA 231 (352)
T ss_pred EECCCCCCHHHHHHHHHhccccC--CcEEECCCCccCHHHHHHHHHhCC-CCEE
Confidence 78888889999999999998765 5677754 35678888888765 5644
No 267
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=91.77 E-value=0.95 Score=47.95 Aligned_cols=84 Identities=18% Similarity=0.129 Sum_probs=56.1
Q ss_pred CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc--CcceEeeCCCCCCCHH
Q 010948 88 PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAM 165 (497)
Q Consensus 88 ~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~--~iPVIaD~DtGYG~~~ 165 (497)
+.|+++=|+-..--|+.+.++|+|+|.+|+.+- . .-|.+..+++. +..|++++ .+|||+|..- -+.
T Consensus 221 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGG---r--~ld~~~~~~~~----l~~i~~a~~~~i~vi~dGGI--r~g- 288 (351)
T cd04737 221 GLPVIVKGIQSPEDADVAINAGADGIWVSNHGG---R--QLDGGPASFDS----LPEIAEAVNHRVPIIFDSGV--RRG- 288 (351)
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCC---c--cCCCCchHHHH----HHHHHHHhCCCCeEEEECCC--CCH-
Confidence 568888899999999999999999999996441 1 12444444443 33444544 5999998432 233
Q ss_pred HHHHHHHHHHHhCccEEEecC
Q 010948 166 NVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IED 186 (497)
...+|.+ ..||++|.|--
T Consensus 289 --~Di~kaL-alGA~~V~iGr 306 (351)
T cd04737 289 --EHVFKAL-ASGADAVAVGR 306 (351)
T ss_pred --HHHHHHH-HcCCCEEEECH
Confidence 3333444 48999999944
No 268
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=91.77 E-value=18 Score=37.39 Aligned_cols=168 Identities=13% Similarity=0.151 Sum_probs=96.7
Q ss_pred HHHHh-CCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCH-HHHHHHHHHHH--HhCc
Q 010948 104 LVEKS-GFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA-MNVKRTVKGYI--KAGF 179 (497)
Q Consensus 104 iae~a-GfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~-~~V~rtVk~l~--~AGa 179 (497)
++++. +.-+.|==++++- ..+| |+ |.-.+++.++.++. .++|||+|+=.| +. ..+...++.+. +.|+
T Consensus 46 ivd~~~~~v~~vK~gla~f-~~~G-~~-G~~~l~~~i~~l~~----~g~~VilD~K~~--DI~nTv~~ya~a~~~~~~g~ 116 (278)
T PRK00125 46 IVDATADLVAAFKPQIAYF-EAHG-AE-GLAQLERTIAYLRE----AGVLVIADAKRG--DIGSTAEAYAKAAFESPLEA 116 (278)
T ss_pred HHHhcCCcccEEeccHHHH-HhcC-ch-hhhHHHHHHHHHHH----CCCcEEEEeecC--ChHHHHHHHHHHHhcCccCC
Confidence 44444 3323333355543 2345 33 34455666655554 368999998866 53 34556677777 6899
Q ss_pred cEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhc---------c---cHHHHHHHHH
Q 010948 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA---------L---SLEESLRRSR 247 (497)
Q Consensus 180 AGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~---------~---~ldeaIeRAk 247 (497)
+++.+---. + .+-++.+++..++.+..++|.++|-.-.+ . -.+...++++
T Consensus 117 DavTVhp~~--------G----------~d~l~~~~~~~~~~~k~vfVlvlTSnp~s~~lq~~~~~~~~~l~~~V~~~a~ 178 (278)
T PRK00125 117 DAVTVSPYM--------G----------FDSLEPYLEYAEEHGKGVFVLCRTSNPGGSDLQFLRTADGRPLYQHVADLAA 178 (278)
T ss_pred cEEEECCcC--------C----------HHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999885421 1 22344445444333457888998865321 1 1455666777
Q ss_pred HHHh-----cCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCC-CCCHHHHHhcCC
Q 010948 248 AFAD-----AGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-ILNPLELEELGF 304 (497)
Q Consensus 248 AY~e-----AGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP-~lt~~eL~elGv 304 (497)
.+.+ +|.|.++|.+.. .+|++++.+..+..|.+ + ||-.+ .-+.+++...|-
T Consensus 179 ~~~~~~~~~~g~~G~VVgaT~-p~e~~~iR~~~~~~~iL---~--PGigaQGg~~~~~~~~~~ 235 (278)
T PRK00125 179 ALNNLGNCGYGSIGLVVGATF-PPELAAVRKILGGMPLL---I--PGIGAQGGDAEATVRAGG 235 (278)
T ss_pred HHhccccCCCCCCEEEECCCC-HHHHHHHHHhCCCCeEE---e--CCcCCCCcCHHHHHHHhh
Confidence 6664 899998886643 57888888876542321 2 23222 235677766654
No 269
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.66 E-value=1.6 Score=43.73 Aligned_cols=126 Identities=19% Similarity=0.162 Sum_probs=79.8
Q ss_pred HHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc---CcceEeeCCCC---CCCHHHHHHHHH
Q 010948 100 LSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAV---SIPVIGDGDNG---YGNAMNVKRTVK 172 (497)
Q Consensus 100 lSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~---~iPVIaD~DtG---YG~~~~V~rtVk 172 (497)
-+.+-++++|+-+|-+= . ..|.+...+++.+||+..++.+.++. +.-|++=-|.= .++.+.+.+-.+
T Consensus 89 ~tv~~~~~aG~agi~IEDq------~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~ 162 (238)
T PF13714_consen 89 RTVRELERAGAAGINIEDQ------RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAK 162 (238)
T ss_dssp HHHHHHHHCT-SEEEEESB------STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEeecc------ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHH
Confidence 34567788999888887 4 13456677899999999999998765 36677766661 123345555568
Q ss_pred HHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhc
Q 010948 173 GYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA 252 (497)
Q Consensus 173 ~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eA 252 (497)
.|.+|||++|.++.-. +.++ ++++...+ +.++.++. +... --.+.+.++
T Consensus 163 aY~eAGAD~ifi~~~~--------------~~~~-i~~~~~~~------~~Pl~v~~-~~~~---------~~~~eL~~l 211 (238)
T PF13714_consen 163 AYAEAGADMIFIPGLQ--------------SEEE-IERIVKAV------DGPLNVNP-GPGT---------LSAEELAEL 211 (238)
T ss_dssp HHHHTT-SEEEETTSS--------------SHHH-HHHHHHHH------SSEEEEET-TSSS---------S-HHHHHHT
T ss_pred HHHHcCCCEEEeCCCC--------------CHHH-HHHHHHhc------CCCEEEEc-CCCC---------CCHHHHHHC
Confidence 9999999999998742 2343 45544333 23566666 3111 226677889
Q ss_pred CCCEEEeccC
Q 010948 253 GADVLFIDAL 262 (497)
Q Consensus 253 GAD~IfIeg~ 262 (497)
|...|..+..
T Consensus 212 Gv~~v~~~~~ 221 (238)
T PF13714_consen 212 GVKRVSYGNS 221 (238)
T ss_dssp TESEEEETSH
T ss_pred CCcEEEEcHH
Confidence 9999988653
No 270
>PRK08227 autoinducer 2 aldolase; Validated
Probab=91.63 E-value=4.4 Score=41.52 Aligned_cols=163 Identities=18% Similarity=0.177 Sum_probs=97.3
Q ss_pred CcceEeeCCCC--CC-CH--HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCC
Q 010948 150 SIPVIGDGDNG--YG-NA--MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD 224 (497)
Q Consensus 150 ~iPVIaD~DtG--YG-~~--~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~d 224 (497)
++|+|+-.+.+ +. ++ ..+.-.|++.++.||+||.+-=-. ++. ...++++.+..+++.+++.|.+
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~--------Gs~---~E~~~l~~l~~v~~ea~~~G~P 142 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFI--------GSE---YEHQSIKNIIQLVDAGLRYGMP 142 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEec--------CCH---HHHHHHHHHHHHHHHHHHhCCc
Confidence 46777777765 22 22 345566888899999998773321 111 1256888888888888887776
Q ss_pred eEEE-EeccchhcccHHHHHHH-HHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCC----CHHH
Q 010948 225 IVIV-ARTDSRQALSLEESLRR-SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPIL----NPLE 298 (497)
Q Consensus 225 fvIi-ARTDA~~~~~ldeaIeR-AkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~l----t~~e 298 (497)
++++ .|.... ..+.+ .|.- ++.-+|.|||.|=+.-.. +.++++++..| +|++ +.+|.+++.. -..+
T Consensus 143 lla~~prG~~~-~~~~~-~ia~aaRiaaELGADiVK~~y~~--~~f~~vv~a~~-vPVv---iaGG~k~~~~~~L~~v~~ 214 (264)
T PRK08227 143 VMAVTAVGKDM-VRDAR-YFSLATRIAAEMGAQIIKTYYVE--EGFERITAGCP-VPIV---IAGGKKLPERDALEMCYQ 214 (264)
T ss_pred EEEEecCCCCc-CchHH-HHHHHHHHHHHHcCCEEecCCCH--HHHHHHHHcCC-CcEE---EeCCCCCCHHHHHHHHHH
Confidence 6553 222111 22333 3433 566779999999886543 78888888655 4543 4444443211 0123
Q ss_pred HHhcCCCEEeccchHHHH-HHHHHHHHHHHHHcC
Q 010948 299 LEELGFKLVAYPLSLIGV-SVRAMQDALTAIKGG 331 (497)
Q Consensus 299 L~elGv~~Vsyp~~ll~a-a~~Am~~al~~i~~g 331 (497)
.-+.|.+-|.+|=-.+.. --.+|-.++.+|-.+
T Consensus 215 ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~ 248 (264)
T PRK08227 215 AIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHE 248 (264)
T ss_pred HHHcCCceeeechhhhccCCHHHHHHHHHHHHhC
Confidence 334688888887665554 334555566666544
No 271
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.62 E-value=1.4 Score=45.37 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCC---CCccceeeec
Q 010948 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPL---VPKMANMLEG 287 (497)
Q Consensus 211 IrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~---vP~~~N~l~~ 287 (497)
|..++...+...+...|.-.+|. ++.++.+.++|||.|.++.+ ++++++++++.+.. -|.. -+...
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~~---------leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~-~leaS 237 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVES---------LEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERV-KIEVS 237 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCC---------HHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCE-EEEEE
Confidence 44444333333455667767665 35566677899999999987 46888888875411 0222 12233
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccch
Q 010948 288 GGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 288 ~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
||- ..-++.++++.|+..++.+..
T Consensus 238 GGI-~~~ni~~yA~tGvD~Is~gal 261 (278)
T PRK08385 238 GGI-TPENIEEYAKLDVDVISLGAL 261 (278)
T ss_pred CCC-CHHHHHHHHHcCCCEEEeChh
Confidence 343 234679999999999998764
No 272
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=91.60 E-value=1.5 Score=42.55 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=61.2
Q ss_pred HHHHHHHhC-CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC
Q 010948 79 KSLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (497)
Q Consensus 79 ~~Lr~ll~~-~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~ 157 (497)
..+.+..++ .+..+++++++.--++.++++|++.+.++..+.. +.+. ......+..++++...+++||++.
T Consensus 108 ~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t----~~~~---~~~~~~~~~i~~i~~~~~iPvia~- 179 (221)
T PRK01130 108 AELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYT----EETK---KPEEPDFALLKELLKAVGCPVIAE- 179 (221)
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceee----cCCC---CCCCcCHHHHHHHHHhCCCCEEEE-
Confidence 344454555 5667778899888889999999999876533321 1111 111122456677777778999984
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEec
Q 010948 158 DNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (497)
Q Consensus 158 DtGYG~~~~V~rtVk~l~~AGaAGI~IE 185 (497)
.|..++.++. ++.++||+||.+=
T Consensus 180 -GGI~t~~~~~----~~l~~GadgV~iG 202 (221)
T PRK01130 180 -GRINTPEQAK----KALELGAHAVVVG 202 (221)
T ss_pred -CCCCCHHHHH----HHHHCCCCEEEEc
Confidence 4555654444 5667899999884
No 273
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.53 E-value=8.1 Score=38.45 Aligned_cols=176 Identities=10% Similarity=0.070 Sum_probs=103.8
Q ss_pred Ch-HHHHHHHH-hCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHH
Q 010948 98 DA-LSAKLVEK-SGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (497)
Q Consensus 98 Da-lSAriae~-aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~ 175 (497)
|+ -.|+..++ .|++-+++-=+.- +.-|.+ ..+..++.|++.+++||.++ .|.-+. +.++++.
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~--a~~~~~--------~n~~~I~~i~~~~~~pi~vG--GGIrs~----e~v~~~l 95 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIG--AKAQHA--------REFDYIKSLRRLTTKDIEVG--GGIRTK----SQIMDYF 95 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcc--cccCCc--------chHHHHHHHHhhcCCeEEEc--CCcCCH----HHHHHHH
Confidence 43 46677777 6999999884321 112333 23566788888888998775 333343 4456778
Q ss_pred HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh----cccH-----HHHHHHH
Q 010948 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ----ALSL-----EESLRRS 246 (497)
Q Consensus 176 ~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~----~~~l-----deaIeRA 246 (497)
++||+=|.| +.. .+-++ ++++++ .+..+ +=++++ -|... ..++ -+.++-+
T Consensus 96 ~~Ga~kvvi-gt~-----------a~~~~-~~l~~~------~~~fg-~~ivvs-lD~~~g~v~~~gw~~~~~~~~~~~~ 154 (234)
T PRK13587 96 AAGINYCIV-GTK-----------GIQDT-DWLKEM------AHTFP-GRIYLS-VDAYGEDIKVNGWEEDTELNLFSFV 154 (234)
T ss_pred HCCCCEEEE-Cch-----------HhcCH-HHHHHH------HHHcC-CCEEEE-EEeeCCEEEecCCcccCCCCHHHHH
Confidence 899999877 321 11122 233333 22222 223333 44421 1111 1235667
Q ss_pred HHHHhcCCCEEEeccC--------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 247 RAFADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 247 kAY~eAGAD~IfIeg~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
+.+.+.|+..+++-.+ ++.+.++++++..+ +|+ +..||-...-.+.++.++|+..|+.+..++.
T Consensus 155 ~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~-ipv----i~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 155 RQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATT-IPV----IASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhCC-CCE----EEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 7788999988776554 35677888888653 453 3333433223556777899999999987765
No 274
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=91.48 E-value=0.87 Score=48.48 Aligned_cols=91 Identities=21% Similarity=0.204 Sum_probs=60.4
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCC
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~D 158 (497)
+.+|+.. +.++++-|+-+.-.|+.+.++|+|+|.+|..+-- .+ |...-+ ++....|++++++|||+|
T Consensus 229 ~~ir~~~--~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGr--ql---d~~~~~----~~~L~ei~~~~~~~vi~d-- 295 (361)
T cd04736 229 RWLRDLW--PHKLLVKGIVTAEDAKRCIELGADGVILSNHGGR--QL---DDAIAP----IEALAEIVAATYKPVLID-- 295 (361)
T ss_pred HHHHHhC--CCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcC--CC---cCCccH----HHHHHHHHHHhCCeEEEe--
Confidence 3444433 4689999999999999999999999999965521 11 322223 334444555667999987
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEecC
Q 010948 159 NGYGNAMNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 159 tGYG~~~~V~rtVk~l~~AGaAGI~IED 186 (497)
.|+-+...|. | ....||++|-|--
T Consensus 296 GGIr~g~Dv~---K-ALaLGA~aV~iGr 319 (361)
T cd04736 296 SGIRRGSDIV---K-ALALGANAVLLGR 319 (361)
T ss_pred CCCCCHHHHH---H-HHHcCCCEEEECH
Confidence 3444444444 3 3468999998843
No 275
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.43 E-value=13 Score=37.57 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=85.8
Q ss_pred CChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCC-CHHHHHHHHHHHH
Q 010948 97 FDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRTVKGYI 175 (497)
Q Consensus 97 yDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG-~~~~V~rtVk~l~ 175 (497)
.|.---..+.+.|++.+-++- +. -.++++...++.+.. .+.-|.+.+.+.++ ++..+.+.++++.
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~----------~~---~~~~~~~~~i~~ak~-~G~~v~~~~~~a~~~~~~~~~~~~~~~~ 148 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAF----------HK---HEFDEALPLIKAIKE-KGYEVFFNLMAISGYSDEELLELLELVN 148 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEec----------cc---ccHHHHHHHHHHHHH-CCCeEEEEEEeecCCCHHHHHHHHHHHH
Confidence 344445566678888876641 11 146666666666643 46778888888776 5678999999999
Q ss_pred HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCC
Q 010948 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGAD 255 (497)
Q Consensus 176 ~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD 255 (497)
++|+..|.|-|.. | ...++++.+.++++++.. +++.-|-..+ -+.+--++.-+.+..+|||+
T Consensus 149 ~~g~~~i~l~DT~-----G------~~~P~~v~~lv~~l~~~~---~~~~~i~~H~----Hn~~Gla~AN~laA~~aGa~ 210 (266)
T cd07944 149 EIKPDVFYIVDSF-----G------SMYPEDIKRIISLLRSNL---DKDIKLGFHA----HNNLQLALANTLEAIELGVE 210 (266)
T ss_pred hCCCCEEEEecCC-----C------CCCHHHHHHHHHHHHHhc---CCCceEEEEe----CCCccHHHHHHHHHHHcCCC
Confidence 9999999999975 3 344567777777776543 2223333222 12334567777888899998
Q ss_pred EE
Q 010948 256 VL 257 (497)
Q Consensus 256 ~I 257 (497)
.|
T Consensus 211 ~v 212 (266)
T cd07944 211 II 212 (266)
T ss_pred EE
Confidence 64
No 276
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=91.40 E-value=6.7 Score=36.98 Aligned_cols=121 Identities=27% Similarity=0.376 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhc---------
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA--------- 236 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~--------- 236 (497)
+....+..+.++|+..|+|-+.. .+.+++.+.++.+.+..++.+..++|+.|.|....
T Consensus 13 ~~~~~l~~~~~~gv~~v~lR~k~-------------~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~ 79 (180)
T PF02581_consen 13 DFLEQLEAALAAGVDLVQLREKD-------------LSDEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLG 79 (180)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SS-------------S-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEB
T ss_pred hHHHHHHHHHHCCCcEEEEcCCC-------------CCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEec
Confidence 45667778888999999997753 12345555555555555444567888888776321
Q ss_pred -----------------------ccHHHHHHHHHHHHhcCCCEEEeccC-----------CCHHHHHHHHHhCCCCCccc
Q 010948 237 -----------------------LSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 237 -----------------------~~ldeaIeRAkAY~eAGAD~IfIeg~-----------~s~eei~~i~~~v~~vP~~~ 282 (497)
+..+| ++...+.|||.+|+-.+ ...+.++++++..+ +|+.
T Consensus 80 ~~~~~~~~~r~~~~~~~~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~-~pv~- 153 (180)
T PF02581_consen 80 QSDLPPAEARKLLGPDKIIGASCHSLEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASP-IPVY- 153 (180)
T ss_dssp TTSSSHHHHHHHHTTTSEEEEEESSHHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTS-SCEE-
T ss_pred ccccchHHhhhhcccceEEEeecCcHHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCC-CCEE-
Confidence 12333 55556899999998543 13578888888776 4543
Q ss_pred eeeecCCCCCCCCHHHHHhcCCCEEec
Q 010948 283 NMLEGGGKTPILNPLELEELGFKLVAY 309 (497)
Q Consensus 283 N~l~~~g~tP~lt~~eL~elGv~~Vsy 309 (497)
.-||-+| -++.++.++|+..|..
T Consensus 154 ---AlGGI~~-~~i~~l~~~Ga~gvAv 176 (180)
T PF02581_consen 154 ---ALGGITP-ENIPELREAGADGVAV 176 (180)
T ss_dssp ---EESS--T-TTHHHHHHTT-SEEEE
T ss_pred ---EEcCCCH-HHHHHHHHcCCCEEEE
Confidence 3345444 5789999999987753
No 277
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=91.39 E-value=2.6 Score=43.82 Aligned_cols=116 Identities=19% Similarity=0.286 Sum_probs=77.3
Q ss_pred CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 010948 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (497)
Q Consensus 150 ~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA 229 (497)
.+|+-+=. .++.+++.+.+.++++.+.|..++||-=+. |...+ -.+.++-+++|++++++. |+++.|
T Consensus 108 ~i~~y~~~-~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~-----~~~~~--~~~~~~d~~~v~avr~~~---g~~~~l-- 174 (341)
T cd03327 108 KIPAYASG-LYPTDLDELPDEAKEYLKEGYRGMKMRFGY-----GPSDG--HAGLRKNVELVRAIREAV---GYDVDL-- 174 (341)
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEECCCC-----CCCcc--hHHHHHHHHHHHHHHHHh---CCCCcE--
Confidence 36654411 123456777788888889999999994211 00000 112456688888887763 666665
Q ss_pred eccchhcccHHHHHHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhCCCCCcc
Q 010948 230 RTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 230 RTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v~~vP~~ 281 (497)
+-|+......++|++.++++++.+ ..|+|-+ .+.+.++++.+..+ +|..
T Consensus 175 ~vDan~~~~~~~A~~~~~~l~~~~--~~~iEeP~~~~d~~~~~~l~~~~~-~pIa 226 (341)
T cd03327 175 MLDCYMSWNLNYAIKMARALEKYE--LRWIEEPLIPDDIEGYAELKKATG-IPIS 226 (341)
T ss_pred EEECCCCCCHHHHHHHHHHhhhcC--CccccCCCCccCHHHHHHHHhcCC-CCeE
Confidence 468877788999999999999875 4577764 34578888888765 5643
No 278
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=91.37 E-value=10 Score=39.24 Aligned_cols=103 Identities=22% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHH
Q 010948 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE 240 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ld 240 (497)
|.+...+.+.+++|++.||+-|=|-.+. ...|-+.++.+|-.+|+.-++++..+. .+..| --|.+..
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeS------TrPg~~~v~~eeE~~Rv~pvI~~l~~~-~~~~I--SIDT~~~---- 100 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGES------TRPGAAEVSVEEELDRVIPVVEAIAQR-FEVWI--SVDTSKP---- 100 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCC------CCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCeE--EEECCCH----
Confidence 5677888888999999999999886654 223455778888888888776665431 23333 3455543
Q ss_pred HHHHHHHHHHhcCCCEE-EeccCCCHHHHHHHHHhCCCCCcc
Q 010948 241 ESLRRSRAFADAGADVL-FIDALASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 241 eaIeRAkAY~eAGAD~I-fIeg~~s~eei~~i~~~v~~vP~~ 281 (497)
+ -+++..++|||+| =|.++.+. ++..+++... .|..
T Consensus 101 ~---va~~AL~~GadiINDI~g~~d~-~~~~~~a~~~-~~vV 137 (282)
T PRK11613 101 E---VIRESAKAGAHIINDIRSLSEP-GALEAAAETG-LPVC 137 (282)
T ss_pred H---HHHHHHHcCCCEEEECCCCCCH-HHHHHHHHcC-CCEE
Confidence 2 2334445799987 23566554 5445555542 4444
No 279
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.36 E-value=5.2 Score=38.05 Aligned_cols=139 Identities=16% Similarity=0.202 Sum_probs=78.6
Q ss_pred HHHHHHhhc-CcceEeeC---CCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH
Q 010948 141 QGQLITQAV-SIPVIGDG---DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD 216 (497)
Q Consensus 141 ~~r~I~ra~-~iPVIaD~---DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~ 216 (497)
.++.+++.. +.++++|. |-| + ..++++.++||+.|.+---. +.....+-++.
T Consensus 42 ~i~~l~~~~~~~~i~~d~k~~d~~-----~--~~~~~~~~~Gad~i~vh~~~--------------~~~~~~~~i~~--- 97 (206)
T TIGR03128 42 AVKEMKEAFPDRKVLADLKTMDAG-----E--YEAEQAFAAGADIVTVLGVA--------------DDATIKGAVKA--- 97 (206)
T ss_pred HHHHHHHHCCCCEEEEEEeeccch-----H--HHHHHHHHcCCCEEEEeccC--------------CHHHHHHHHHH---
Confidence 455565543 56787776 333 1 25678889999988762211 11111112222
Q ss_pred HHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec-cC-------CCHHHHHHHHHhCCCCCccceeeecC
Q 010948 217 ARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID-AL-------ASKEEMKAFCEISPLVPKMANMLEGG 288 (497)
Q Consensus 217 Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe-g~-------~s~eei~~i~~~v~~vP~~~N~l~~~ 288 (497)
.++.|..+++-.=+. .+..++++.+.+.|+|.|-++ +. ...+.++++.+.++.++ -+..+
T Consensus 98 -~~~~g~~~~~~~~~~-------~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~---i~v~G- 165 (206)
T TIGR03128 98 -AKKHGKEVQVDLINV-------KDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEAR---VAVAG- 165 (206)
T ss_pred -HHHcCCEEEEEecCC-------CChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCc---EEEEC-
Confidence 222343333311111 123456666678899999774 21 24567788877766422 12243
Q ss_pred CCCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 289 GKTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 289 g~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
|-++ -+..++.+.|+..+..+..++.+
T Consensus 166 GI~~-~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 166 GINL-DTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred CcCH-HHHHHHHHcCCCEEEEeehhcCC
Confidence 4332 36789999999999999887763
No 280
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=91.33 E-value=2.9 Score=44.70 Aligned_cols=95 Identities=23% Similarity=0.312 Sum_probs=54.9
Q ss_pred HHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHh
Q 010948 141 QGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (497)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~ 220 (497)
.++.|++.+++||++= |-+. .+.++++.++||+||.+-. |- |+.+....-..+-|..++++.
T Consensus 219 ~i~~l~~~~~~PvivK---Gv~~----~eda~~a~~~Gvd~I~VS~--------HG-Grq~~~~~a~~~~L~ei~~av-- 280 (367)
T TIGR02708 219 DIEEIAGYSGLPVYVK---GPQC----PEDADRALKAGASGIWVTN--------HG-GRQLDGGPAAFDSLQEVAEAV-- 280 (367)
T ss_pred HHHHHHHhcCCCEEEe---CCCC----HHHHHHHHHcCcCEEEECC--------cC-ccCCCCCCcHHHHHHHHHHHh--
Confidence 4667777788999997 3333 4566788899999998854 42 333321111122333333332
Q ss_pred cCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEecc
Q 010948 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (497)
Q Consensus 221 ~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg 261 (497)
+.++-|++--+-+.. .+=+|+++ .|||++++-.
T Consensus 281 -~~~i~vi~dGGIr~g------~Dv~KaLa-lGAd~V~igR 313 (367)
T TIGR02708 281 -DKRVPIVFDSGVRRG------QHVFKALA-SGADLVALGR 313 (367)
T ss_pred -CCCCcEEeeCCcCCH------HHHHHHHH-cCCCEEEEcH
Confidence 234556665544332 23345555 9999999853
No 281
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.32 E-value=1.4 Score=47.63 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=59.8
Q ss_pred HHHHHHHhC--CCceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe
Q 010948 79 KSLRQILEL--PGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (497)
Q Consensus 79 ~~Lr~ll~~--~~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa 155 (497)
+.++++.+. +-.+++.++-..-.|+.+.++|+|+|.++ +-+-.+... ..+....+.-+.+..+..+++..++|||+
T Consensus 183 ~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr-~~~g~g~p~ltai~~v~~~~~~~~vpVIA 261 (404)
T PRK06843 183 ELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTR-IVAGVGVPQITAICDVYEVCKNTNICIIA 261 (404)
T ss_pred HHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcce-eecCCCCChHHHHHHHHHHHhhcCCeEEE
Confidence 344444432 23466889999999999999999999976 322111100 11111122223334445666677899998
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
|. |+.++..+. +...+||.+|.+
T Consensus 262 dG--GI~~~~Di~----KALalGA~aVmv 284 (404)
T PRK06843 262 DG--GIRFSGDVV----KAIAAGADSVMI 284 (404)
T ss_pred eC--CCCCHHHHH----HHHHcCCCEEEE
Confidence 73 444554554 334689999998
No 282
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=91.30 E-value=2 Score=44.34 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCccEEE---ecCCCCCCCCCCCCCcccc-CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 167 VKRTVKGYIKAGFAGII---LEDQVSPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~---IEDq~~pKrCGH~~gk~lv-p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
.+...+....+|-...| |-|....|.. |.. +. +.+.+.+.|+++++. .++..|.--.+.
T Consensus 136 ~R~l~k~AV~~GGg~~HR~gLsd~vLikdN-Hi~---~~g~~~~i~~av~~~r~~----~~~~kIeVEv~t--------- 198 (284)
T PRK06096 136 TRLLATQAVLAAGGLIHRAGCAETILLFAN-HRH---FLHDPQDWSGAINQLRRH----APEKKIVVEADT--------- 198 (284)
T ss_pred hhHHHHHHHHcCCCcCccCCcchhhhhHHH-HHH---HhCCcccHHHHHHHHHHh----CCCCCEEEECCC---------
Confidence 44455666688888777 7776644421 321 00 011222233333322 234445544443
Q ss_pred HHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 010948 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~ 311 (497)
++.++.+.++|||.|+++.. ++++++++++.++. -|... +...||-+ .-++.++++.|+..++.+.
T Consensus 199 leqa~ea~~agaDiI~LDn~-~~e~l~~av~~~~~~~~~~~-leaSGGI~-~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 199 PKEAIAALRAQPDVLQLDKF-SPQQATEIAQIAPSLAPHCT-LSLAGGIN-LNTLKNYADCGIRLFITSA 265 (284)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeE-EEEECCCC-HHHHHHHHhcCCCEEEECc
Confidence 56777788999999999876 46888888876531 12221 22233432 3467899999999998865
No 283
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.28 E-value=4.3 Score=43.16 Aligned_cols=90 Identities=23% Similarity=0.287 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhCccEEEecCCCC-----------CCCCCCCCCccccCHHHHHHH-HHHHHHHHHhcCCCeEEEEeccc
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQVS-----------PKGCGHTRGRKVVSREEAVMR-IKAAVDARKESGSDIVIVARTDS 233 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~~-----------pKrCGH~~gk~lvp~ee~~~K-IrAAv~Ar~~~g~dfvIiARTDA 233 (497)
...+.+++..+||++||.|--.-. .+|-..-+| .+...--++.. |++++++ .|+||.|.-|.-.
T Consensus 145 ~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGG-slenR~Rf~~eii~air~~---vG~d~~v~vRis~ 220 (361)
T cd04747 145 AFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGG-SLAARSRFAAEVVKAIRAA---VGPDFPIILRFSQ 220 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHH---cCCCCeEEEEECc
Confidence 345566778889999998865420 122222122 22222222222 2233322 3678888888754
Q ss_pred h--------hcccHHHHHHHHHHHHhcCCCEEEe
Q 010948 234 R--------QALSLEESLRRSRAFADAGADVLFI 259 (497)
Q Consensus 234 ~--------~~~~ldeaIeRAkAY~eAGAD~IfI 259 (497)
. ....++|+++-++.+.++|+|.|=+
T Consensus 221 ~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 221 WKQQDYTARLADTPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 1 1245789999999999999999755
No 284
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.06 E-value=1.2 Score=48.99 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=61.4
Q ss_pred HHHHHHHhC-C-CceeecccCChHHHHHHHHhCCcEEEec-chhhhh-h----hcccCCCCCCCHHHHHHHHHHHHhhcC
Q 010948 79 KSLRQILEL-P-GVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISA-A----RLALPDTGFISYGEMVDQGQLITQAVS 150 (497)
Q Consensus 79 ~~Lr~ll~~-~-~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSa-s----~lG~PD~g~ltldEml~~~r~I~ra~~ 150 (497)
+.++++.+. + -++.+-++-+.-.|+.+.++|+|+|.++ |.+-.. + -.|.|. -..+..+..+++..+
T Consensus 271 ~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~------~~ai~~~~~~~~~~~ 344 (495)
T PTZ00314 271 DMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQ------ASAVYHVARYARERG 344 (495)
T ss_pred HHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCCh------HHHHHHHHHHHhhcC
Confidence 455555544 2 3455668999999999999999999876 322111 1 124443 234455666677778
Q ss_pred cceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecC
Q 010948 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 151 iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IED 186 (497)
+|||+|. |..++..+. |. ..+||++|.+=-
T Consensus 345 v~vIadG--Gi~~~~di~---kA-la~GA~~Vm~G~ 374 (495)
T PTZ00314 345 VPCIADG--GIKNSGDIC---KA-LALGADCVMLGS 374 (495)
T ss_pred CeEEecC--CCCCHHHHH---HH-HHcCCCEEEECc
Confidence 9999973 444554444 33 358999999933
No 285
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=91.02 E-value=4.8 Score=41.81 Aligned_cols=155 Identities=14% Similarity=0.138 Sum_probs=82.6
Q ss_pred HHHHHHHhC--CcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC-----cceEeeCCCCCCCHHHHHHHHH
Q 010948 101 SAKLVEKSG--FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-----IPVIGDGDNGYGNAMNVKRTVK 172 (497)
Q Consensus 101 SAriae~aG--fdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~-----iPVIaD~DtGYG~~~~V~rtVk 172 (497)
-+.++++++ ++++-+- |.-.. -|... .-..+.+.+.++.+.+.++ +||++=+..++ +.+++.+.++
T Consensus 150 ~~~~~~~~~~~ad~ielN~scP~~---~g~~~--~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~ia~ 223 (327)
T cd04738 150 YVIGVRKLGPYADYLVVNVSSPNT---PGLRD--LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDL-SDEELEDIAD 223 (327)
T ss_pred HHHHHHHHHhhCCEEEEECCCCCC---Ccccc--ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCC-CHHHHHHHHH
Confidence 445555554 6766654 22211 12222 2344555666777777665 99999886543 3456778889
Q ss_pred HHHHhCccEEEecCCCC--------CCC--CCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 173 GYIKAGFAGIILEDQVS--------PKG--CGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 173 ~l~~AGaAGI~IEDq~~--------pKr--CGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
.++++||+||.+-.... +.. .|-..|..+.+. ..+.|+.++++ .+.++-|++=-.-.. .
T Consensus 224 ~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~--~l~~v~~l~~~---~~~~ipIi~~GGI~t---~--- 292 (327)
T cd04738 224 VALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKER--STEVLRELYKL---TGGKIPIIGVGGISS---G--- 292 (327)
T ss_pred HHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHH--HHHHHHHHHHH---hCCCCcEEEECCCCC---H---
Confidence 99999999999865431 000 111123332221 12333333332 223455665443322 2
Q ss_pred HHHHHHHHhcCCCEEEeccC--C-CHHHHHHHHH
Q 010948 243 LRRSRAFADAGADVLFIDAL--A-SKEEMKAFCE 273 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~--~-s~eei~~i~~ 273 (497)
+.+..+..+|||+|.+-.. . .+..+.++.+
T Consensus 293 -~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 293 -EDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred -HHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHh
Confidence 4455566799999987421 1 2455555544
No 286
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=90.99 E-value=1.4 Score=44.29 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=59.4
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkA 248 (497)
..++.+..+|.+.|.|.-+ |. .++.+++..-|+|+... +...+.|.-... . ...+.
T Consensus 24 ~~~e~~a~~G~D~v~iD~E-------Hg----~~~~~~~~~~~~a~~~~------g~~~~VRvp~~~----~---~~i~r 79 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGE-------HA----PNDVLTFIPQLMALKGS------ASAPVVRPPWNE----P---VIIKR 79 (249)
T ss_pred HHHHHHHhcCCCEEEEecc-------cC----CCCHHHHHHHHHHHhhc------CCCcEEECCCCC----H---HHHHH
Confidence 3446677899999999665 53 35667776666665433 344566764422 1 33455
Q ss_pred HHhcCCCEEEeccCCCHHHHHHHHHhCC
Q 010948 249 FADAGADVLFIDALASKEEMKAFCEISP 276 (497)
Q Consensus 249 Y~eAGAD~IfIeg~~s~eei~~i~~~v~ 276 (497)
..++||+.|++|.+.+.||++++++...
T Consensus 80 ~LD~Ga~gIivP~v~taeea~~~v~a~k 107 (249)
T TIGR03239 80 LLDIGFYNFLIPFVESAEEAERAVAATR 107 (249)
T ss_pred HhcCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 7799999999999999999999998654
No 287
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=90.98 E-value=1.4 Score=47.31 Aligned_cols=92 Identities=11% Similarity=0.075 Sum_probs=59.4
Q ss_pred HHHHHHhC-CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCC
Q 010948 80 SLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (497)
Q Consensus 80 ~Lr~ll~~-~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~D 158 (497)
.+..+.+. +.++++-|+-+.-.|+.+.++|+|+|.+|+.+- ...|.+.-|++-+.+..+.+. ..+||++|.-
T Consensus 244 ~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGG-----r~~d~~~~t~~~L~ei~~~~~--~~~~vi~dGG 316 (383)
T cd03332 244 DLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGG-----RQVDGSIAALDALPEIVEAVG--DRLTVLFDSG 316 (383)
T ss_pred HHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCC-----cCCCCCcCHHHHHHHHHHHhc--CCCeEEEeCC
Confidence 34444433 578999999999999999999999999996552 123555444444333333321 1499999843
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 159 NGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 159 tGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
.-+...+. |. ...||++|.|
T Consensus 317 --Ir~G~Dv~---KA-LaLGA~~v~i 336 (383)
T cd03332 317 --VRTGADIM---KA-LALGAKAVLI 336 (383)
T ss_pred --cCcHHHHH---HH-HHcCCCEEEE
Confidence 32333344 22 3579999988
No 288
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=90.92 E-value=2.1 Score=43.71 Aligned_cols=84 Identities=13% Similarity=0.191 Sum_probs=60.9
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkA 248 (497)
..++.+..+|.+.|.|+-+ |. .++.+++..-|+++... +...+.|.-... . ...+.
T Consensus 30 ~~~E~~a~~GfD~v~iD~E-------Hg----~~~~~~l~~~i~a~~~~------g~~~lVRvp~~~----~---~~i~r 85 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDGE-------HA----PNTIQDLYHQLQAIAPY------ASQPVIRPVEGS----K---PLIKQ 85 (267)
T ss_pred HHHHHHHHcCCCEEEEccc-------cC----CCCHHHHHHHHHHHHhc------CCCeEEECCCCC----H---HHHHH
Confidence 3445667899999999655 53 35677777777776533 344566765432 1 33566
Q ss_pred HHhcCCCEEEeccCCCHHHHHHHHHhCC
Q 010948 249 FADAGADVLFIDALASKEEMKAFCEISP 276 (497)
Q Consensus 249 Y~eAGAD~IfIeg~~s~eei~~i~~~v~ 276 (497)
..++||+.|++|.+.+.|+++++++...
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~r 113 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSATR 113 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhcC
Confidence 8899999999999999999999998754
No 289
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=90.89 E-value=3 Score=44.23 Aligned_cols=155 Identities=14% Similarity=0.156 Sum_probs=94.4
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccE
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAG 181 (497)
|+.+.++|++.|=++++. + -.-.|-. -.-.|++..++.+.. +.++.++ .+ .+-+++..++|+..
T Consensus 74 a~~L~~~GV~~IEvGs~v-s--pk~vPqm--ad~~ev~~~i~~~~~-~~~~~l~------~n----~~die~A~~~g~~~ 137 (347)
T PLN02746 74 IQRLVSSGLPVVEATSFV-S--PKWVPQL--ADAKDVMAAVRNLEG-ARFPVLT------PN----LKGFEAAIAAGAKE 137 (347)
T ss_pred HHHHHHcCCCEEEECCCc-C--ccccccc--ccHHHHHHHHHhccC-CceeEEc------CC----HHHHHHHHHcCcCE
Confidence 566778999999999763 2 1224543 244566666654322 3344443 13 34555667899999
Q ss_pred EEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEE-EEeccc---hhcccHHHHHHHHHHHHhcCCCEE
Q 010948 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDS---RQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 182 I~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvI-iARTDA---~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
|++-=..++. |...+-=.+.+|.+++++.+++..++.|..+.+ +.-+.. ....+.+..++-++.+.++|||.|
T Consensus 138 v~i~~s~Sd~---h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I 214 (347)
T PLN02746 138 VAVFASASES---FSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEI 214 (347)
T ss_pred EEEEEecCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 9987433211 322222246789999998888777765532210 111111 112357888999999999999999
Q ss_pred Eec---cCCCHHHHHHHHHhC
Q 010948 258 FID---ALASKEEMKAFCEIS 275 (497)
Q Consensus 258 fIe---g~~s~eei~~i~~~v 275 (497)
.+- |.-++.++.++.+.+
T Consensus 215 ~l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 215 SLGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred EecCCcCCcCHHHHHHHHHHH
Confidence 885 455677777777653
No 290
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.71 E-value=1.3 Score=45.92 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=52.0
Q ss_pred CeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcC
Q 010948 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG 303 (497)
Q Consensus 224 dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elG 303 (497)
...|.-..+. ++.++.+.++|||+|+++.+. ++++++.++.++. .. .++..|....-++.++++.|
T Consensus 197 ~~kIeVEv~t---------leea~~a~~agaDiImLDnms-pe~l~~av~~~~~-~~---~leaSGGI~~~ni~~yA~tG 262 (290)
T PRK06559 197 VKMVEVEVES---------LAAAEEAAAAGADIIMLDNMS-LEQIEQAITLIAG-RS---RIECSGNIDMTTISRFRGLA 262 (290)
T ss_pred CCeEEEECCC---------HHHHHHHHHcCCCEEEECCCC-HHHHHHHHHHhcC-ce---EEEEECCCCHHHHHHHHhcC
Confidence 3456656554 355666778999999999874 6899999987653 11 23332323334679999999
Q ss_pred CCEEeccch
Q 010948 304 FKLVAYPLS 312 (497)
Q Consensus 304 v~~Vsyp~~ 312 (497)
|..++.+..
T Consensus 263 VD~Is~gal 271 (290)
T PRK06559 263 IDYVSSGSL 271 (290)
T ss_pred CCEEEeCcc
Confidence 999998763
No 291
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=90.70 E-value=7.6 Score=41.03 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=58.4
Q ss_pred cCChH-HHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHH
Q 010948 96 CFDAL-SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKG 173 (497)
Q Consensus 96 ayDal-SAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~ 173 (497)
.||.- -+++++..+.+++-+. .... -...|. +.-+++.+++.++.|++.+++||++=. .|+|.. .+.++.
T Consensus 134 ~~~~~~~~~~~~~~~adal~l~l~~~q---e~~~p~-g~~~f~~~le~i~~i~~~~~vPVivK~-~g~g~s---~~~a~~ 205 (352)
T PRK05437 134 GYGVEEAQRAVEMIEADALQIHLNPLQ---ELVQPE-GDRDFRGWLDNIAEIVSALPVPVIVKE-VGFGIS---KETAKR 205 (352)
T ss_pred CCCHHHHHHHHHhcCCCcEEEeCccch---hhcCCC-CcccHHHHHHHHHHHHHhhCCCEEEEe-CCCCCc---HHHHHH
Confidence 45543 3466777888888876 2211 123443 334678889999999999999999853 466643 577788
Q ss_pred HHHhCccEEEecC
Q 010948 174 YIKAGFAGIILED 186 (497)
Q Consensus 174 l~~AGaAGI~IED 186 (497)
++++|+++|.+-.
T Consensus 206 l~~~Gvd~I~Vsg 218 (352)
T PRK05437 206 LADAGVKAIDVAG 218 (352)
T ss_pred HHHcCCCEEEECC
Confidence 9999999999944
No 292
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=90.70 E-value=8.3 Score=40.40 Aligned_cols=86 Identities=20% Similarity=0.048 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCcEEEecc---hhhhhhh----cccCCCCCCCHH----HHHHHHHHHHhhcC--cceE-----eeCCCCC
Q 010948 100 LSAKLVEKSGFSFCFTSG---FSISAAR----LALPDTGFISYG----EMVDQGQLITQAVS--IPVI-----GDGDNGY 161 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG---~avSas~----lG~PD~g~ltld----Eml~~~r~I~ra~~--iPVI-----aD~DtGY 161 (497)
-.|+.+.++|||+|-+-+ +-+.-.. .=..|.-.=+++ ..++.++.|+++++ .||. .|...|.
T Consensus 141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g 220 (353)
T cd02930 141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGG 220 (353)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCC
Confidence 367888899999998852 2222110 011221111333 44556677777664 5554 4654442
Q ss_pred CCHHHHHHHHHHHHHhCccEEEec
Q 010948 162 GNAMNVKRTVKGYIKAGFAGIILE 185 (497)
Q Consensus 162 G~~~~V~rtVk~l~~AGaAGI~IE 185 (497)
-+.....+.++.++++|++-|++-
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC
Confidence 245677889999999999999993
No 293
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=90.67 E-value=2.8 Score=42.77 Aligned_cols=197 Identities=18% Similarity=0.238 Sum_probs=111.1
Q ss_pred HHHHHhCCCceee----cccCChHH----HHHHHHhCCcEEEecchhhhhhhcccCCC------------CCCCHHHHHH
Q 010948 81 LRQILELPGVHQG----PACFDALS----AKLVEKSGFSFCFTSGFSISAARLALPDT------------GFISYGEMVD 140 (497)
Q Consensus 81 Lr~ll~~~~~iv~----p~ayDalS----Ariae~aGfdAI~vSG~avSas~lG~PD~------------g~ltldEml~ 140 (497)
|.++.+++++..+ .|--|.-+ ++.++++|+|.|=++ .-.| -.+.|+ ..+++++.++
T Consensus 1 f~~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiG-iPfS---DP~ADGpvIq~A~~rAL~~G~~~~~~~~ 76 (259)
T PF00290_consen 1 FAELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIG-IPFS---DPVADGPVIQKASQRALKNGFTLEKIFE 76 (259)
T ss_dssp HHHHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE---SS---SCTTSSHHHHHHHHHHHHTT--HHHHHH
T ss_pred ChhHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC-CCCC---CCCCCCHHHHHHHHHHHHCCCCHHHHHH
Confidence 4555666654332 34444333 245567899988776 1111 123332 2478899999
Q ss_pred HHHHHH-hhcCcceEeeCCCCCCCHH---HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH
Q 010948 141 QGQLIT-QAVSIPVIGDGDNGYGNAM---NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD 216 (497)
Q Consensus 141 ~~r~I~-ra~~iPVIaD~DtGYG~~~---~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~ 216 (497)
.++.|+ +..++|++. .+|-|+. .+.+-++++.++|++|+.|=|= |.||. +.++.+.+
T Consensus 77 ~~~~ir~~~~~~pivl---m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDL---------------P~ee~-~~~~~~~~ 137 (259)
T PF00290_consen 77 LVKEIRKKEPDIPIVL---MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDL---------------PPEES-EELREAAK 137 (259)
T ss_dssp HHHHHHHHCTSSEEEE---EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTS---------------BGGGH-HHHHHHHH
T ss_pred HHHHHhccCCCCCEEE---EeeccHHhccchHHHHHHHHHcCCCEEEEcCC---------------ChHHH-HHHHHHHH
Confidence 999999 777899987 5677762 3667788888999999999883 23443 23333322
Q ss_pred HHHhcCCCe-EEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC------CC--HHHHHHHHH---hCCCCCcccee
Q 010948 217 ARKESGSDI-VIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL------AS--KEEMKAFCE---ISPLVPKMANM 284 (497)
Q Consensus 217 Ar~~~g~df-vIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~------~s--~eei~~i~~---~v~~vP~~~N~ 284 (497)
. .|.++ .+++-|-. -+|.+.+.+.+-..||+-+. .+ ..++..+.+ .....|+.
T Consensus 138 ~---~gl~~I~lv~p~t~---------~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~--- 202 (259)
T PF00290_consen 138 K---HGLDLIPLVAPTTP---------EERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVA--- 202 (259)
T ss_dssp H---TT-EEEEEEETTS----------HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EE---
T ss_pred H---cCCeEEEEECCCCC---------HHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceE---
Confidence 2 23333 34444222 26778888777788886422 11 233444443 33335543
Q ss_pred eecCCCCCCCCHHHHHh--cCCCEEeccchHHHHHHH
Q 010948 285 LEGGGKTPILNPLELEE--LGFKLVAYPLSLIGVSVR 319 (497)
Q Consensus 285 l~~~g~tP~lt~~eL~e--lGv~~Vsyp~~ll~aa~~ 319 (497)
+.+|-+ +.++.++ .|+.-|+.|+.+.+....
T Consensus 203 vGFGI~----~~e~~~~~~~~aDGvIVGSa~v~~i~~ 235 (259)
T PF00290_consen 203 VGFGIS----TPEQAKKLAAGADGVIVGSAFVKIIEE 235 (259)
T ss_dssp EESSS-----SHHHHHHHHTTSSEEEESHHHHHHHHH
T ss_pred EecCCC----CHHHHHHHHccCCEEEECHHHHHHHHH
Confidence 333222 4444444 699999999988776543
No 294
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=90.63 E-value=1.7 Score=47.22 Aligned_cols=100 Identities=19% Similarity=0.105 Sum_probs=60.9
Q ss_pred HHHHHHhC--CCceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEee
Q 010948 80 SLRQILEL--PGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (497)
Q Consensus 80 ~Lr~ll~~--~~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD 156 (497)
.++++.+. +-++++-|+-++-.|+.+.++|+|+|-++ |.+-.....-. +.-.++.-+.+..+...++..++|||+|
T Consensus 255 ~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~-~~~g~p~~~~i~~~~~~~~~~~vpviad 333 (450)
T TIGR01302 255 SIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIV-AGVGVPQITAVYDVAEYAAQSGIPVIAD 333 (450)
T ss_pred HHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCcccee-cCCCccHHHHHHHHHHHHhhcCCeEEEe
Confidence 34444433 33556669999999999999999999877 43321111111 1112233345555666666778999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEecC
Q 010948 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 157 ~DtGYG~~~~V~rtVk~l~~AGaAGI~IED 186 (497)
. |.-++.++. | ..++||++|.+-.
T Consensus 334 G--Gi~~~~di~---k-Ala~GA~~V~~G~ 357 (450)
T TIGR01302 334 G--GIRYSGDIV---K-ALAAGADAVMLGS 357 (450)
T ss_pred C--CCCCHHHHH---H-HHHcCCCEEEECc
Confidence 3 333444444 3 3468999999843
No 295
>PLN02334 ribulose-phosphate 3-epimerase
Probab=90.63 E-value=3.7 Score=40.29 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=82.9
Q ss_pred HHHHHhCCcEEEecchhhhhhhcccCCCCC---CCHH-HHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHh
Q 010948 103 KLVEKSGFSFCFTSGFSISAARLALPDTGF---ISYG-EMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (497)
Q Consensus 103 riae~aGfdAI~vSG~avSas~lG~PD~g~---ltld-Eml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~A 177 (497)
+.+.++|++.+-+- ..|... +++. +++...+.+++.. ++++++. ++. .-+..+.++
T Consensus 27 ~~~~~~g~~~ihld----------~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~------~p~---d~~~~~~~~ 87 (229)
T PLN02334 27 KRVLDAGADWLHVD----------VMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVT------NPE---DYVPDFAKA 87 (229)
T ss_pred HHHHHcCCCEEEEe----------cccCCcCCccccCHHHHHHHHhcCCCcEEEEeccC------CHH---HHHHHHHHc
Confidence 44556688777762 223222 2221 4455555554433 4555553 332 335666889
Q ss_pred CccEE--Eec-CCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcC-
Q 010948 178 GFAGI--ILE-DQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG- 253 (497)
Q Consensus 178 GaAGI--~IE-Dq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAG- 253 (497)
||+|| |+| +.. +.....++.++.. ++. ++-+-. .... +++++++.+.|
T Consensus 88 gad~v~vH~~q~~~----------------d~~~~~~~~i~~~------g~~-iGls~~--~~t~---~~~~~~~~~~~~ 139 (229)
T PLN02334 88 GASIFTFHIEQAST----------------IHLHRLIQQIKSA------GMK-AGVVLN--PGTP---VEAVEPVVEKGL 139 (229)
T ss_pred CCCEEEEeeccccc----------------hhHHHHHHHHHHC------CCe-EEEEEC--CCCC---HHHHHHHHhccC
Confidence 99999 998 221 1112233333322 221 222111 0011 34456666664
Q ss_pred CCEEEec----cCC-------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 254 ADVLFID----ALA-------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 254 AD~IfIe----g~~-------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
+|.|.+= +.. ..+.++++.+..+..| +...||-++ -++.++.+.|+..++.+..++.+
T Consensus 140 ~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~----I~a~GGI~~-e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 140 VDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELD----IEVDGGVGP-STIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred CCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCc----EEEeCCCCH-HHHHHHHHcCCCEEEEChHHhCC
Confidence 9987431 111 1234555555544333 223334332 36789999999999999887764
No 296
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=90.60 E-value=13 Score=39.51 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=81.7
Q ss_pred hHHHHHHHHhCCcEEEec---chhhhhhhc----ccCCCCCCCHHH----HHHHHHHHHhhcC-cceEe----e-----C
Q 010948 99 ALSAKLVEKSGFSFCFTS---GFSISAARL----ALPDTGFISYGE----MVDQGQLITQAVS-IPVIG----D-----G 157 (497)
Q Consensus 99 alSAriae~aGfdAI~vS---G~avSas~l----G~PD~g~ltldE----ml~~~r~I~ra~~-iPVIa----D-----~ 157 (497)
+.+|+.+.+||||+|-+- |+-++-..- =-.|.=.=+++. .++.+++|.++++ -+|.+ + .
T Consensus 162 ~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~ 241 (362)
T PRK10605 162 RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNV 241 (362)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccC
Confidence 357899999999999886 333331110 112310125553 2333444444442 12332 1 2
Q ss_pred CCCCCCHHH-HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhc
Q 010948 158 DNGYGNAMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA 236 (497)
Q Consensus 158 DtGYG~~~~-V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~ 236 (497)
+.|+ +.+. ..+.++.|+++|++-|++-... ..+..-.+ .++.++|+.++ +..+++.++.+.
T Consensus 242 ~~G~-~~~e~~~~~~~~L~~~giD~i~vs~~~-------~~~~~~~~-~~~~~~ik~~~------~~pv~~~G~~~~--- 303 (362)
T PRK10605 242 DNGP-NEEADALYLIEQLGKRGIAYLHMSEPD-------WAGGEPYS-DAFREKVRARF------HGVIIGAGAYTA--- 303 (362)
T ss_pred CCCC-CHHHHHHHHHHHHHHcCCCEEEecccc-------ccCCcccc-HHHHHHHHHHC------CCCEEEeCCCCH---
Confidence 3333 3344 6888999999999999996431 11111222 34555655443 234555555431
Q ss_pred ccHHHHHHHHHHHHhcC-CCEEEec--cCCCHHHHHHHHHh
Q 010948 237 LSLEESLRRSRAFADAG-ADVLFID--ALASKEEMKAFCEI 274 (497)
Q Consensus 237 ~~ldeaIeRAkAY~eAG-AD~IfIe--g~~s~eei~~i~~~ 274 (497)
+.+....+.| ||+|.+- -+.+++.++++.+.
T Consensus 304 -------~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~g 337 (362)
T PRK10605 304 -------EKAETLIGKGLIDAVAFGRDYIANPDLVARLQRK 337 (362)
T ss_pred -------HHHHHHHHcCCCCEEEECHHhhhCccHHHHHhcC
Confidence 3344445555 9999883 35677777777664
No 297
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=90.52 E-value=2.2 Score=44.00 Aligned_cols=43 Identities=33% Similarity=0.475 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCCEEEeccCCCHHHHHHHHHhC----CCCCccceeee
Q 010948 244 RRSRAFADAGADVLFIDALASKEEMKAFCEIS----PLVPKMANMLE 286 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v----~~vP~~~N~l~ 286 (497)
++++++.++|+|+|++|.+++.+|++.+++.. +..|.++++..
T Consensus 144 ~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~ 190 (304)
T PRK09485 144 PRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTL 190 (304)
T ss_pred HHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 55889999999999999999999988777543 25788887764
No 298
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=90.48 E-value=2.2 Score=43.15 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=59.8
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkA 248 (497)
..++.+..+|.+.|.|+-+ |. ..+.+++..-|+|+... +...+.|.-... . ...+.
T Consensus 31 ~~~e~~a~~G~D~v~iD~E-------Hg----~~~~~~~~~~i~a~~~~------g~~~lVRvp~~~----~---~~i~r 86 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGE-------HA----PNDVSTFIPQLMALKGS------ASAPVVRVPTNE----P---VIIKR 86 (256)
T ss_pred HHHHHHHhcCCCEEEEccc-------cC----CCCHHHHHHHHHHHhhc------CCCcEEECCCCC----H---HHHHH
Confidence 4456677899999999665 53 34667777666665433 455666764432 1 23455
Q ss_pred HHhcCCCEEEeccCCCHHHHHHHHHhCC
Q 010948 249 FADAGADVLFIDALASKEEMKAFCEISP 276 (497)
Q Consensus 249 Y~eAGAD~IfIeg~~s~eei~~i~~~v~ 276 (497)
..++||+.|++|.+.+.|+++++++...
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~k 114 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVASTR 114 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHcC
Confidence 6799999999999999999999998653
No 299
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=90.48 E-value=15 Score=37.58 Aligned_cols=129 Identities=22% Similarity=0.246 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHHHh-CccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhccc
Q 010948 160 GYGNAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALS 238 (497)
Q Consensus 160 GYG~~~~V~rtVk~l~~A-GaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ 238 (497)
|--+++.+.++++.--++ |-.=||||= |.+.+.|.| +.++.++|+..-.+ .+|.|.--|-..
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEV--------i~d~~tLlP--D~~etl~Aae~Lv~---eGF~VlPY~~dD---- 140 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEV--------IGDEKTLLP--DPIETLKAAEQLVK---EGFVVLPYTTDD---- 140 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEE--------ecCCcccCC--ChHHHHHHHHHHHh---CCCEEeeccCCC----
Confidence 433677777777766664 567788885 334456766 34778888876655 478888765432
Q ss_pred HHHHHHHHHHHHhcCCCEEEecc--------CCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEecc
Q 010948 239 LEESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (497)
Q Consensus 239 ldeaIeRAkAY~eAGAD~IfIeg--------~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp 310 (497)
.--|++++|+||-+|++.+ +.+..-++-+.++. .+|+++. .|-.+| -...+-.|||+.-|..-
T Consensus 141 ----~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a-~VPviVD---AGiG~p-SdAa~aMElG~DaVL~N 211 (262)
T COG2022 141 ----PVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEA-DVPVIVD---AGIGTP-SDAAQAMELGADAVLLN 211 (262)
T ss_pred ----HHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhC-CCCEEEe---CCCCCh-hHHHHHHhcccceeehh
Confidence 2348999999999999874 56788999999988 4787644 222234 24578899999999876
Q ss_pred chHH
Q 010948 311 LSLI 314 (497)
Q Consensus 311 ~~ll 314 (497)
...-
T Consensus 212 TAiA 215 (262)
T COG2022 212 TAIA 215 (262)
T ss_pred hHhh
Confidence 5533
No 300
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=90.46 E-value=6.2 Score=42.15 Aligned_cols=97 Identities=24% Similarity=0.360 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHH-hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 163 NAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 163 ~~~~V~rtVk~l~~-AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
+++.+.+.++++.+ .|..++||-- |+. +.++-+++|++++++. +++.| +.|+......++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv-------G~~------~~~~di~~v~avRea~----~~~~l--~vDaN~~w~~~~ 228 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG-------GVL------PGEEEIEAVKALAEAF----PGARL--RLDPNGAWSLET 228 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec-------CCC------CHHHHHHHHHHHHHhC----CCCcE--EEeCCCCcCHHH
Confidence 45677777878774 6999999942 221 2345577888888773 24333 458888888999
Q ss_pred HHHHHHHHHhcCCCEEEeccC-CCHHHHHHHHHhCCCCCccc
Q 010948 242 SLRRSRAFADAGADVLFIDAL-ASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 242 aIeRAkAY~eAGAD~IfIeg~-~s~eei~~i~~~v~~vP~~~ 282 (497)
|++.++++++ + ..|+|-+ ++.+.++++.+..+ +|+..
T Consensus 229 A~~~~~~l~~-~--l~~iEeP~~d~~~~~~L~~~~~-~PIa~ 266 (395)
T cd03323 229 AIRLAKELEG-V--LAYLEDPCGGREGMAEFRRATG-LPLAT 266 (395)
T ss_pred HHHHHHhcCc-C--CCEEECCCCCHHHHHHHHHhcC-CCEEc
Confidence 9999999988 4 5578753 57788999988876 67553
No 301
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=90.45 E-value=1.9 Score=46.14 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=60.8
Q ss_pred HHHHHHhC-CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc--CcceEee
Q 010948 80 SLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGD 156 (497)
Q Consensus 80 ~Lr~ll~~-~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~--~iPVIaD 156 (497)
.++.+.+. +.|+++=|+-..-.|+.+.++|+++|.+|+.+-- .-|....+++.+.. |++++ .+|||+|
T Consensus 219 ~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGr-----q~~~~~a~~~~L~e----i~~av~~~i~vi~d 289 (367)
T TIGR02708 219 DIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGR-----QLDGGPAAFDSLQE----VAEAVDKRVPIVFD 289 (367)
T ss_pred HHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCcc-----CCCCCCcHHHHHHH----HHHHhCCCCcEEee
Confidence 44444432 4688888999999999999999999999976621 12444445554433 33334 4999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEecC
Q 010948 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 157 ~DtGYG~~~~V~rtVk~l~~AGaAGI~IED 186 (497)
. +..+-...+|.+. .||++|-|--
T Consensus 290 G-----GIr~g~Dv~KaLa-lGAd~V~igR 313 (367)
T TIGR02708 290 S-----GVRRGQHVFKALA-SGADLVALGR 313 (367)
T ss_pred C-----CcCCHHHHHHHHH-cCCCEEEEcH
Confidence 3 3333334445555 8999998843
No 302
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.43 E-value=1.4 Score=45.41 Aligned_cols=65 Identities=14% Similarity=0.264 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 010948 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
++.++.+.++|||.|+++.+. ++++++.++.++.. ..++..|....-++.++++.||.+++.+..
T Consensus 203 lee~~ea~~~gaDiImLDn~s-~e~l~~av~~~~~~----~~leaSGgI~~~ni~~yA~tGVD~Is~gal 267 (281)
T PRK06543 203 LDQIEPVLAAGVDTIMLDNFS-LDDLREGVELVDGR----AIVEASGNVNLNTVGAIASTGVDVISVGAL 267 (281)
T ss_pred HHHHHHHHhcCCCEEEECCCC-HHHHHHHHHHhCCC----eEEEEECCCCHHHHHHHHhcCCCEEEeCcc
Confidence 355666778999999999874 68999988876531 134443433345789999999999998763
No 303
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=90.43 E-value=5.7 Score=40.28 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=88.7
Q ss_pred HHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEE
Q 010948 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGI 182 (497)
Q Consensus 103 riae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI 182 (497)
+.+.++|++.|=+++ |.. -.++.+.++.+++....+-+ .++.. .-.+-+++..++|+..|
T Consensus 29 ~~L~~~Gv~~IEvG~----------P~~----~~~~~~~~~~l~~~~~~~~v----~~~~r--~~~~di~~a~~~g~~~i 88 (262)
T cd07948 29 KALDAFGVDYIELTS----------PAA----SPQSRADCEAIAKLGLKAKI----LTHIR--CHMDDARIAVETGVDGV 88 (262)
T ss_pred HHHHHcCCCEEEEEC----------CCC----CHHHHHHHHHHHhCCCCCcE----EEEec--CCHHHHHHHHHcCcCEE
Confidence 456678999988875 211 14556666666542211111 11221 12334666778999999
Q ss_pred EecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec--
Q 010948 183 ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID-- 260 (497)
Q Consensus 183 ~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe-- 260 (497)
+|--..++. |...+.--+.+|.+++++.+++..++.|..+.+.. .|+.. ...+..++-++.+.++|||.|.+.
T Consensus 89 ~i~~~~S~~---~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~-eda~r-~~~~~l~~~~~~~~~~g~~~i~l~Dt 163 (262)
T cd07948 89 DLVFGTSPF---LREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS-EDSFR-SDLVDLLRVYRAVDKLGVNRVGIADT 163 (262)
T ss_pred EEEEecCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE-EeeCC-CCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 997654321 22222223568888888888777666554333333 24433 246777788888899999999875
Q ss_pred -cCCCHHHHHHHHHhC
Q 010948 261 -ALASKEEMKAFCEIS 275 (497)
Q Consensus 261 -g~~s~eei~~i~~~v 275 (497)
|.-+++++.++.+.+
T Consensus 164 ~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 164 VGIATPRQVYELVRTL 179 (262)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 456778887777654
No 304
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=90.41 E-value=14 Score=36.12 Aligned_cols=146 Identities=19% Similarity=0.175 Sum_probs=88.3
Q ss_pred HHHHHHhhcCcceEeeCCCCCCCH-HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 141 QGQLITQAVSIPVIGDGDNGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtGYG~~-~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
.++.+.+.. .||++|+=.+ +. ..+...++.+.+.||+.+.+---. | .+-|++++++.+
T Consensus 41 ~i~~l~~~~-~~i~~DlK~~--DIg~tv~~~~~~~~~~gad~~Tvh~~~---------G---------~~~l~~~~~~~~ 99 (216)
T cd04725 41 IVKELRELG-FLVFLDLKLG--DIPNTVAAAAEALLGLGADAVTVHPYG---------G---------SDMLKAALEAAE 99 (216)
T ss_pred HHHHHHHCC-CcEEEEeecC--chHHHHHHHHHHHHhcCCCEEEECCcC---------C---------HHHHHHHHHHHh
Confidence 344444433 8999998864 53 345666777788899999984421 1 234566666655
Q ss_pred hcCCCeEEEEeccchhcc--------cH-HHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCC
Q 010948 220 ESGSDIVIVARTDSRQAL--------SL-EESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGK 290 (497)
Q Consensus 220 ~~g~dfvIiARTDA~~~~--------~l-deaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~ 290 (497)
+.+..+++++.+-..... .. +-.+.+++...++|.+.+++.+.. .+++++... |...-++ ||-
T Consensus 100 ~~~~~~~~v~~lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~-~~~i~~~~~-----~~~~~lt--PGI 171 (216)
T cd04725 100 EKGKGLFAVTVLSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE-PEALRRALG-----PDFLILT--PGI 171 (216)
T ss_pred ccCCeEEEEEcCCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcc-hHHHHHhhC-----CCCeEEc--CCc
Confidence 445667777775543322 22 235577888889999999876543 355543332 1222222 232
Q ss_pred CC---------CCCHHHHHhcCCCEEeccchHHH
Q 010948 291 TP---------ILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 291 tP---------~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
.+ ..++++..+.|...++.|-..+.
T Consensus 172 ~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~ 205 (216)
T cd04725 172 GAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQ 205 (216)
T ss_pred CCCCCccccccccCHHHHHHcCCcEEEEChhhcc
Confidence 22 23788888999887777655444
No 305
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=90.40 E-value=12 Score=39.24 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHH
Q 010948 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE 240 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ld 240 (497)
+.++....+.++++.+.|..++||- .|. . . ..++-+++|++++++. |+++.|. -|+.....++
T Consensus 141 ~~~~~~~~~~a~~~~~~Gf~~~Kik-------~~~-~-~---~~~~di~~i~~vR~~~---G~~~~l~--vDan~~~~~~ 203 (368)
T cd03329 141 LESPEAYADFAEECKALGYRAIKLH-------PWG-P-G---VVRRDLKACLAVREAV---GPDMRLM--HDGAHWYSRA 203 (368)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-------cCC-c-h---hHHHHHHHHHHHHHHh---CCCCeEE--EECCCCcCHH
Confidence 3466777888888889999999992 111 0 0 1244577888887663 6777664 4777778899
Q ss_pred HHHHHHHHHHhcCCCEEEeccCC---CHHHHHHHHHhCCCCCc
Q 010948 241 ESLRRSRAFADAGADVLFIDALA---SKEEMKAFCEISPLVPK 280 (497)
Q Consensus 241 eaIeRAkAY~eAGAD~IfIeg~~---s~eei~~i~~~v~~vP~ 280 (497)
+|++.++++++.+ ..|+|-+- +.+.++++.+..+ +|.
T Consensus 204 ~A~~~~~~l~~~~--l~~iEeP~~~~d~~~~~~l~~~~~-ipI 243 (368)
T cd03329 204 DALRLGRALEELG--FFWYEDPLREASISSYRWLAEKLD-IPI 243 (368)
T ss_pred HHHHHHHHhhhcC--CCeEeCCCCchhHHHHHHHHhcCC-CCE
Confidence 9999999999875 45676543 4567777777654 554
No 306
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=90.39 E-value=4.6 Score=42.62 Aligned_cols=173 Identities=17% Similarity=0.219 Sum_probs=100.5
Q ss_pred ccccCCCCCccceeecceeeecccchh--hhhhcccCCCCcceeeccccCCCccccccCcHHHHHHHHHhCCCcee-ecc
Q 010948 19 LFHSNSRPSSFLGINNNTISFNKTNTN--TLLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQ-GPA 95 (497)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~pr~~~~~R~y~rgs~~i~~a~~~a~~Lr~ll~~~~~iv-~p~ 95 (497)
+|-..-+++.+-+++|-+=-.+-+... ..+...+..-+|..+.=..-+-.+-.+ -...-+.-++|.++ +..+ ..+
T Consensus 127 ~~~~~~~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd-~~~~v~aa~~L~~~-Gf~v~~yc 204 (326)
T PRK11840 127 MLTDYIDPKKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPD-MVETLKATEILVKE-GFQVMVYC 204 (326)
T ss_pred hHHHhhhhcCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccC-HHHHHHHHHHHHHC-CCEEEEEe
Confidence 344444566777778876555544432 234455666778666322211111111 01122344555544 4666 458
Q ss_pred cCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHH
Q 010948 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (497)
Q Consensus 96 ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~ 175 (497)
+=|...|+.++++|+-++.--+.-+. +-.| ++ -.+.++.+.+..++||++| .|-|.+.+++.. +
T Consensus 205 ~~d~~~a~~l~~~g~~avmPl~~pIG-sg~g------v~---~p~~i~~~~e~~~vpVivd--AGIg~~sda~~A----m 268 (326)
T PRK11840 205 SDDPIAAKRLEDAGAVAVMPLGAPIG-SGLG------IQ---NPYTIRLIVEGATVPVLVD--AGVGTASDAAVA----M 268 (326)
T ss_pred CCCHHHHHHHHhcCCEEEeecccccc-CCCC------CC---CHHHHHHHHHcCCCcEEEe--CCCCCHHHHHHH----H
Confidence 88999999999999955554222221 2223 22 2345566666678999998 567777777644 5
Q ss_pred HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 176 ~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
+.|++||-+--... + . -++-.|++-.+.|++|.+
T Consensus 269 elGadgVL~nSaIa--~----a----~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 269 ELGCDGVLMNTAIA--E----A----KNPVLMARAMKLAVEAGR 302 (326)
T ss_pred HcCCCEEEEcceec--c----C----CCHHHHHHHHHHHHHHHH
Confidence 78999999876652 0 1 134467777777877754
No 307
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.38 E-value=1.4 Score=45.80 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 010948 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
++.++...++|||.|+++... ++++++.++.++. .. .++..|....-++.++++.||..++.+..
T Consensus 215 leea~eA~~aGaDiImLDnms-pe~l~~av~~~~~--~~--~lEaSGGIt~~ni~~yA~tGVD~IS~gal 279 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNFT-LDMMREAVRVTAG--RA--VLEVSGGVNFDTVRAFAETGVDRISIGAL 279 (294)
T ss_pred HHHHHHHHHcCCCEEEECCCC-HHHHHHHHHhhcC--Ce--EEEEECCCCHHHHHHHHhcCCCEEEeCcc
Confidence 455666778999999999874 5899988887653 11 23333323334679999999999998763
No 308
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=90.33 E-value=1.2 Score=40.77 Aligned_cols=82 Identities=24% Similarity=0.211 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeccCC--CHHHHHHHHHhCCC--CCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 010948 239 LEESLRRSRAFADAGADVLFIDALA--SKEEMKAFCEISPL--VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (497)
Q Consensus 239 ldeaIeRAkAY~eAGAD~IfIeg~~--s~eei~~i~~~v~~--vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll 314 (497)
.++.++. ..+.+||+|.+-++. +.+.+.++.+.+.. .+.+ -++.+ |..|.-..++|+++|+..++.|.+..
T Consensus 42 ~e~~v~a---a~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i-~vivG-G~~~~~~~~~l~~~Gvd~~~~~gt~~ 116 (132)
T TIGR00640 42 PEEIARQ---AVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDI-LVVVG-GVIPPQDFDELKEMGVAEIFGPGTPI 116 (132)
T ss_pred HHHHHHH---HHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCC-EEEEe-CCCChHhHHHHHHCCCCEEECCCCCH
Confidence 3444444 447799999998764 44566666654321 1111 13343 54565678999999999999999888
Q ss_pred HHHHHHHHHHH
Q 010948 315 GVSVRAMQDAL 325 (497)
Q Consensus 315 ~aa~~Am~~al 325 (497)
...+.++...+
T Consensus 117 ~~i~~~l~~~~ 127 (132)
T TIGR00640 117 PESAIFLLKKL 127 (132)
T ss_pred HHHHHHHHHHH
Confidence 87777776644
No 309
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=90.29 E-value=15 Score=36.70 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=81.7
Q ss_pred HHHHHHhCCcEEEecc---hhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhC
Q 010948 102 AKLVEKSGFSFCFTSG---FSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (497)
Q Consensus 102 Ariae~aGfdAI~vSG---~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG 178 (497)
++.+.++|++.+=++. .+-+....++|- .+-.|.+..++.... +..+.+=...|+++. +-+++..+.|
T Consensus 28 ~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~---~~~~e~i~~~~~~~~--~~~~~~~~~~~~~~~----~~i~~a~~~g 98 (263)
T cd07943 28 ARALDAAGVPLIEVGHGDGLGGSSLNYGFAA---HTDEEYLEAAAEALK--QAKLGVLLLPGIGTV----DDLKMAADLG 98 (263)
T ss_pred HHHHHHcCCCEEEeecCCCCCCcccccCCCC---CChHHHHHHHHHhcc--CCEEEEEecCCccCH----HHHHHHHHcC
Confidence 4566788999987761 111000112222 223344444432222 234433334666664 4456677889
Q ss_pred ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEE
Q 010948 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (497)
Q Consensus 179 aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~If 258 (497)
++.|.|-+... + ...++.+++..++.|....++. +|+. ....++.++.++...++|||.|.
T Consensus 99 ~~~iri~~~~s----------------~-~~~~~~~i~~ak~~G~~v~~~~-~~~~-~~~~~~~~~~~~~~~~~G~d~i~ 159 (263)
T cd07943 99 VDVVRVATHCT----------------E-ADVSEQHIGAARKLGMDVVGFL-MMSH-MASPEELAEQAKLMESYGADCVY 159 (263)
T ss_pred CCEEEEEechh----------------h-HHHHHHHHHHHHHCCCeEEEEE-Eecc-CCCHHHHHHHHHHHHHcCCCEEE
Confidence 99999966431 1 1233333433343454444443 3332 23568889999999999999998
Q ss_pred ec---cCCCHHHHHHHHHhC
Q 010948 259 ID---ALASKEEMKAFCEIS 275 (497)
Q Consensus 259 Ie---g~~s~eei~~i~~~v 275 (497)
+. |.-.++++.++.+.+
T Consensus 160 l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 160 VTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred EcCCCCCcCHHHHHHHHHHH
Confidence 85 345677887777654
No 310
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=90.12 E-value=1.4 Score=45.35 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 010948 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
+++++.+.++|||.|+++.+ +.+++++.++.+.. -|... +...||- ..-++.++++.|+..++.+..
T Consensus 198 leea~ea~~~GaDiI~lDn~-~~e~l~~~v~~l~~~~~~~~-leasGGI-~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 198 IEQALTVLQASPDILQLDKF-TPQQLHHLHERLKFFDHIPT-LAAAGGI-NPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred HHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHhccCCCEE-EEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 57777888999999999986 45788888876631 12221 2223343 234678999999999998763
No 311
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.06 E-value=1.9 Score=44.19 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=52.1
Q ss_pred eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCCCHHHHHhcC
Q 010948 225 IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELG 303 (497)
Q Consensus 225 fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~lt~~eL~elG 303 (497)
..|..-.|. ++.++...++|||.|.++.+ +.++++++++..+. .|... +...||-+| -++.++.+.|
T Consensus 183 ~~I~VEv~t---------leea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~-ieAsGgIt~-~ni~~ya~~G 250 (273)
T PRK05848 183 AKIEIECES---------LEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVL-LEASGNITL-ENINAYAKSG 250 (273)
T ss_pred ceEEEEeCC---------HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeE-EEEECCCCH-HHHHHHHHcC
Confidence 566665554 45566677899999999886 67899988875331 23221 223334332 4678999999
Q ss_pred CCEEeccchH
Q 010948 304 FKLVAYPLSL 313 (497)
Q Consensus 304 v~~Vsyp~~l 313 (497)
+..++.|...
T Consensus 251 vD~IsvG~l~ 260 (273)
T PRK05848 251 VDAISSGSLI 260 (273)
T ss_pred CCEEEeChhh
Confidence 9999998743
No 312
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=90.05 E-value=5.7 Score=42.21 Aligned_cols=148 Identities=19% Similarity=0.237 Sum_probs=88.5
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhh-cCcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA-VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra-~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
|+.+.++|++.|=++ +|-... +| .+.++.|.+. .+.-+++-.. ...+.++...++|+.
T Consensus 32 a~~L~~~GV~~IE~G----------~p~~~~---~~-~e~i~~i~~~~~~~~i~~~~r-------~~~~di~~a~~~g~~ 90 (378)
T PRK11858 32 ARMLDEIGVDQIEAG----------FPAVSE---DE-KEAIKAIAKLGLNASILALNR-------AVKSDIDASIDCGVD 90 (378)
T ss_pred HHHHHHhCCCEEEEe----------CCCcCh---HH-HHHHHHHHhcCCCeEEEEEcc-------cCHHHHHHHHhCCcC
Confidence 456678899988765 222111 11 2234444432 2222333221 124456777789999
Q ss_pred EEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 181 GI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
.|+|-...++- |...+-=.+.++.++++..+++..++.|..+.+.+ .|+. ..+.+..++-+++..++|||.|.+.
T Consensus 91 ~i~i~~~~Sd~---h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~-ed~~-r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 91 AVHIFIATSDI---HIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA-EDAS-RTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred EEEEEEcCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe-ccCC-CCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 99998765421 22111123578889988888877766554333332 2332 2467888999999999999999875
Q ss_pred ---cCCCHHHHHHHHHhC
Q 010948 261 ---ALASKEEMKAFCEIS 275 (497)
Q Consensus 261 ---g~~s~eei~~i~~~v 275 (497)
|..+++++.++.+.+
T Consensus 166 DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 166 DTVGILDPFTMYELVKEL 183 (378)
T ss_pred ccCCCCCHHHHHHHHHHH
Confidence 445677777666543
No 313
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=89.99 E-value=3.1 Score=45.32 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHH-hCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 163 NAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 163 ~~~~V~rtVk~l~~-AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
+++.+.+.++++.+ .|...+||.= |+. +.++-+++|++++++. +++.| +.|+.+....++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKv-------G~~------~~~~Di~~v~avRea~----~d~~L--~vDAN~~wt~~~ 240 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKG-------GVL------RGEEEIEAVTALAKRF----PQARI--TLDPNGAWSLDE 240 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEec-------CCC------ChHHHHHHHHHHHHhC----CCCeE--EEECCCCCCHHH
Confidence 45666666766654 5999999932 221 2356688999998873 35433 678888888999
Q ss_pred HHHHHHHHHhcCCCEEEeccCC---C----HHHHHHHHHhCCCCCccc
Q 010948 242 SLRRSRAFADAGADVLFIDALA---S----KEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 242 aIeRAkAY~eAGAD~IfIeg~~---s----~eei~~i~~~v~~vP~~~ 282 (497)
|++.++++++. ..|+|-+- + .+.++++.+..+ +|..+
T Consensus 241 Ai~~~~~Le~~---~~~iEePv~~~d~~~~~~~la~Lr~~~~-iPIa~ 284 (441)
T TIGR03247 241 AIALCKDLKGV---LAYAEDPCGAEQGYSGREVMAEFRRATG-LPTAT 284 (441)
T ss_pred HHHHHHHhhhh---hceEeCCCCcccccchHHHHHHHHHhCC-CCEEc
Confidence 99999999885 45887653 2 566888888775 67654
No 314
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=89.97 E-value=1.6 Score=45.92 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=54.5
Q ss_pred CCc-eeecccCChHHHHHHHHhCCcEEEec-chhhhh-h--h--cccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCC
Q 010948 88 PGV-HQGPACFDALSAKLVEKSGFSFCFTS-GFSISA-A--R--LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (497)
Q Consensus 88 ~~~-iv~p~ayDalSAriae~aGfdAI~vS-G~avSa-s--~--lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtG 160 (497)
+.+ ++..|+-++-.|+.+.++|+++|.+| |.+-.. + . .|.|+- .+..+..++.+.++|||+|.---
T Consensus 136 p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~-------~l~ai~ev~~a~~~pVIadGGIr 208 (321)
T TIGR01306 136 PDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-------QLAALRWCAKAARKPIIADGGIR 208 (321)
T ss_pred CCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCch-------HHHHHHHHHHhcCCeEEEECCcC
Confidence 345 45556999999999999999999999 433211 1 1 133321 23455666667789999994333
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEec
Q 010948 161 YGNAMNVKRTVKGYIKAGFAGIILE 185 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AGaAGI~IE 185 (497)
+| ...+|.+ .+||++|.+=
T Consensus 209 ~~-----~Di~KAL-a~GAd~Vmig 227 (321)
T TIGR01306 209 TH-----GDIAKSI-RFGASMVMIG 227 (321)
T ss_pred cH-----HHHHHHH-HcCCCEEeec
Confidence 32 2333444 4799999984
No 315
>PRK09389 (R)-citramalate synthase; Provisional
Probab=89.92 E-value=7.4 Score=42.99 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=91.7
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
|+.+.++|++.|=+++.+. +--| .+.++.|.+.. +.-|.+ +... ..+-++...++|+.
T Consensus 30 a~~L~~~Gv~~IE~G~p~~-----~~~d---------~e~v~~i~~~~~~~~i~a-----~~r~--~~~di~~a~~~g~~ 88 (488)
T PRK09389 30 ARKLDELGVDVIEAGSAIT-----SEGE---------REAIKAVTDEGLNAEICS-----FARA--VKVDIDAALECDVD 88 (488)
T ss_pred HHHHHHcCCCEEEEeCCcC-----CHHH---------HHHHHHHHhcCCCcEEEe-----eccc--CHHHHHHHHhCCcC
Confidence 4567789999998875331 1111 23445554322 223333 2221 24446677789999
Q ss_pred EEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 181 GI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
.|+|-...++. |...+--.+.+|.++++..+++-.++.|..+.+.+- |+. ....+-+++-+++..++|||.|.+.
T Consensus 89 ~v~i~~~~Sd~---h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e-d~~-r~~~~~l~~~~~~~~~~Ga~~i~l~ 163 (488)
T PRK09389 89 SVHLVVPTSDL---HIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE-DAS-RADLDFLKELYKAGIEAGADRICFC 163 (488)
T ss_pred EEEEEEccCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe-eCC-CCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 99998876533 322222246788888888877766655544444443 332 2356788888999999999999886
Q ss_pred ---cCCCHHHHHHHHHhC
Q 010948 261 ---ALASKEEMKAFCEIS 275 (497)
Q Consensus 261 ---g~~s~eei~~i~~~v 275 (497)
|..+++++.++.+.+
T Consensus 164 DTvG~~~P~~~~~lv~~l 181 (488)
T PRK09389 164 DTVGILTPEKTYELFKRL 181 (488)
T ss_pred cCCCCcCHHHHHHHHHHH
Confidence 345677887777654
No 316
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=89.90 E-value=1.8 Score=44.55 Aligned_cols=133 Identities=17% Similarity=0.198 Sum_probs=84.8
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhh----ccc---CC----CCCCCHHHHHHHHHHHHh
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAAR----LAL---PD----TGFISYGEMVDQGQLITQ 147 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~----lG~---PD----~g~ltldEml~~~r~I~r 147 (497)
+-|++.-+.-+..++-.+-|.---.++.+. .|.+.+++--|.... +|. |= +-.-|.+|.+..+.-|..
T Consensus 99 ~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y-~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s 177 (286)
T COG2876 99 KLLKRAADETGLPVVTEVMDVRDVEAAAEY-ADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILS 177 (286)
T ss_pred HHHHHHHHHcCCeeEEEecCHHHHHHHHhh-hhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHh
Confidence 334444444455556666666665565555 777777753333211 132 21 123577777777666632
Q ss_pred ----------------------------------hcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCC
Q 010948 148 ----------------------------------AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGC 193 (497)
Q Consensus 148 ----------------------------------a~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrC 193 (497)
-+.+|||||.-++.|.-.-+.-+++..+.+||+|+.+|=.-.|. |
T Consensus 178 ~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~-~ 256 (286)
T COG2876 178 HGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPE-K 256 (286)
T ss_pred CCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecCCcc-c
Confidence 35799999999998877677778888889999999999765443 4
Q ss_pred CCCCCccccCHHHHHHHHHH
Q 010948 194 GHTRGRKVVSREEAVMRIKA 213 (497)
Q Consensus 194 GH~~gk~lvp~ee~~~KIrA 213 (497)
.-.++++-++.++|-.-++.
T Consensus 257 AlsD~~Qql~~~~f~~l~~~ 276 (286)
T COG2876 257 ALSDAKQQLTPEEFEELVKE 276 (286)
T ss_pred ccCcccccCCHHHHHHHHHH
Confidence 45567777766666444433
No 317
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.88 E-value=1.6 Score=44.99 Aligned_cols=64 Identities=13% Similarity=0.233 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 010948 244 RRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
+.+..+.++|||.|+++.+. .+++++.++.++. ..+ ++..|....-++.++++.||..++.+..
T Consensus 205 eea~ea~~~gaDiI~LDn~s-~e~l~~av~~~~~-~~~---leaSGGI~~~ni~~yA~tGVD~Is~Gal 268 (281)
T PRK06106 205 DQLEEALELGVDAVLLDNMT-PDTLREAVAIVAG-RAI---TEASGRITPETAPAIAASGVDLISVGWL 268 (281)
T ss_pred HHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHhCC-Cce---EEEECCCCHHHHHHHHhcCCCEEEeChh
Confidence 34455668999999999874 5899988887653 122 3332323334679999999999998763
No 318
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=89.84 E-value=17 Score=36.80 Aligned_cols=102 Identities=22% Similarity=0.250 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
++..+.+.++++++.||+-|-|-.. +...+...++.++-.+|+..++++.++. .+..|-. |+... ++
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDIG~~------st~p~~~~i~~~~E~~rl~~~v~~~~~~-~~~plsi--DT~~~----~v 87 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDVGGE------STRPGADRVSPEEELNRVVPVIKALRDQ-PDVPISV--DTYRA----EV 87 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC------CCCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCeEEE--eCCCH----HH
Confidence 5678889999999999999999322 1223445667777778888888776542 2444433 44443 23
Q ss_pred HHHHHHHHhcCCCEEEe-ccCCCHHHHHHHHHhCCCCCccc
Q 010948 243 LRRSRAFADAGADVLFI-DALASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfI-eg~~s~eei~~i~~~v~~vP~~~ 282 (497)
++.|- ++|+|+|-= .+.++ +++..+++... .|..+
T Consensus 88 i~~al---~~G~~iINsis~~~~-~~~~~l~~~~~-~~vV~ 123 (257)
T TIGR01496 88 ARAAL---EAGADIINDVSGGQD-PAMLEVAAEYG-VPLVL 123 (257)
T ss_pred HHHHH---HcCCCEEEECCCCCC-chhHHHHHHcC-CcEEE
Confidence 33332 359998752 23333 45666666653 45443
No 319
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=89.82 E-value=14 Score=38.93 Aligned_cols=133 Identities=15% Similarity=0.060 Sum_probs=83.7
Q ss_pred ecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCC-CCHHHHHHHH
Q 010948 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGY-GNAMNVKRTV 171 (497)
Q Consensus 93 ~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGY-G~~~~V~rtV 171 (497)
.|+-.+.-..+.+.++|++.+-+.-.. .. .+....+++.+. ..+.-+.+-+.+.+ -++..+.+.+
T Consensus 85 ~pg~~~~~dl~~a~~~gvd~iri~~~~------~e-------~~~~~~~i~~ak-~~G~~v~~~l~~a~~~~~e~l~~~a 150 (337)
T PRK08195 85 LPGIGTVDDLKMAYDAGVRVVRVATHC------TE-------ADVSEQHIGLAR-ELGMDTVGFLMMSHMAPPEKLAEQA 150 (337)
T ss_pred ccCcccHHHHHHHHHcCCCEEEEEEec------ch-------HHHHHHHHHHHH-HCCCeEEEEEEeccCCCHHHHHHHH
Confidence 356667766777888899987765211 01 123444444443 33444444444433 3678899999
Q ss_pred HHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHh
Q 010948 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (497)
Q Consensus 172 k~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~e 251 (497)
+++.++|+..|.|-|.. | ...++++.+.++++++.. +++.-|--.+ -+.+--++.-+.+..+
T Consensus 151 ~~~~~~Ga~~i~i~DT~-----G------~~~P~~v~~~v~~l~~~l---~~~i~ig~H~----HnnlGla~ANslaAi~ 212 (337)
T PRK08195 151 KLMESYGAQCVYVVDSA-----G------ALLPEDVRDRVRALRAAL---KPDTQVGFHG----HNNLGLGVANSLAAVE 212 (337)
T ss_pred HHHHhCCCCEEEeCCCC-----C------CCCHHHHHHHHHHHHHhc---CCCCeEEEEe----CCCcchHHHHHHHHHH
Confidence 99999999999999975 3 334577888888877653 3344333322 1223445677777889
Q ss_pred cCCCEE
Q 010948 252 AGADVL 257 (497)
Q Consensus 252 AGAD~I 257 (497)
|||+.|
T Consensus 213 aGa~~i 218 (337)
T PRK08195 213 AGATRI 218 (337)
T ss_pred hCCCEE
Confidence 999943
No 320
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=89.75 E-value=3.1 Score=41.78 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=59.4
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkA 248 (497)
..++.+..+|++.|.|+=+ |.. .+.+++..-|+++... +.-++.|...... ...++
T Consensus 24 ~~~e~~~~~g~D~v~iDlE-------H~~----~~~~~~~~~~~a~~~~------g~~~~VRv~~~~~-------~~i~~ 79 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGE-------HAP----NDVRTILSQLQALAPY------PSSPVVRPAIGDP-------VLIKQ 79 (249)
T ss_pred HHHHHHHhcCCCEEEEecc-------CCC----CCHHHHHHHHHHHHhc------CCCcEEECCCCCH-------HHHHH
Confidence 4456777899999999554 533 3666666655444321 3356778654321 25677
Q ss_pred HHhcCCCEEEeccCCCHHHHHHHHHhCC
Q 010948 249 FADAGADVLFIDALASKEEMKAFCEISP 276 (497)
Q Consensus 249 Y~eAGAD~IfIeg~~s~eei~~i~~~v~ 276 (497)
..++|||.|++|.+.+.|+++++++...
T Consensus 80 ~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 80 LLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred HhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 8999999999999999999999998754
No 321
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=89.74 E-value=2.1 Score=45.56 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=55.2
Q ss_pred CceeecccCChHHHHHHHHhCCcEEEec-chhhhhh---hc--ccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCC
Q 010948 89 GVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAA---RL--ALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG 162 (497)
Q Consensus 89 ~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas---~l--G~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG 162 (497)
-++++=|+=++-.|+-+.++|.|+|-++ |-+-.++ .. |+| .-.-+..+...++..++|||+|..--|.
T Consensus 150 ~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~P------Q~tAv~~~a~~a~~~~v~iIADGGi~~s 223 (352)
T PF00478_consen 150 VPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVP------QLTAVYECAEAARDYGVPIIADGGIRTS 223 (352)
T ss_dssp SEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCT------HHHHHHHHHHHHHCTTSEEEEESS-SSH
T ss_pred ceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCc------HHHHHHHHHHHhhhccCceeecCCcCcc
Confidence 4577779999999999999999999999 4332222 22 444 4444555666667678999999544432
Q ss_pred CHHHHHHHHHHHHHhCccEEEecC
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IED 186 (497)
-++. |. +.+||+.|.+-.
T Consensus 224 --GDi~---KA-la~GAd~VMlG~ 241 (352)
T PF00478_consen 224 --GDIV---KA-LAAGADAVMLGS 241 (352)
T ss_dssp --HHHH---HH-HHTT-SEEEEST
T ss_pred --ccee---ee-eeecccceeech
Confidence 2233 33 468999999943
No 322
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=89.68 E-value=15 Score=38.67 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=79.5
Q ss_pred HHHHHHhCCcEEEec-chhh--hhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhC
Q 010948 102 AKLVEKSGFSFCFTS-GFSI--SAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (497)
Q Consensus 102 Ariae~aGfdAI~vS-G~av--Sas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG 178 (497)
++.++++|++.|=++ |.++ +....|.|- .+-.|.+..+..... +..+.+=+.-|.++.. -++...+.|
T Consensus 30 a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~---~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~~~----dl~~a~~~g 100 (333)
T TIGR03217 30 AAALDEAGVDAIEVTHGDGLGGSSFNYGFSA---HTDLEYIEAAADVVK--RAKVAVLLLPGIGTVH----DLKAAYDAG 100 (333)
T ss_pred HHHHHHcCCCEEEEecCCCCCCccccCCCCC---CChHHHHHHHHHhCC--CCEEEEEeccCccCHH----HHHHHHHCC
Confidence 456778999999887 2222 112235443 222233322222222 2333333344666543 356777899
Q ss_pred ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEE
Q 010948 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (497)
Q Consensus 179 aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~If 258 (497)
++.|.|-.. |.. .+...+-|+.+ ++.|....++. .++. ....++.++.++...++|||+|+
T Consensus 101 vd~iri~~~-----~~e--------~d~~~~~i~~a----k~~G~~v~~~l-~~s~-~~~~e~l~~~a~~~~~~Ga~~i~ 161 (333)
T TIGR03217 101 ARTVRVATH-----CTE--------ADVSEQHIGMA----RELGMDTVGFL-MMSH-MTPPEKLAEQAKLMESYGADCVY 161 (333)
T ss_pred CCEEEEEec-----cch--------HHHHHHHHHHH----HHcCCeEEEEE-Eccc-CCCHHHHHHHHHHHHhcCCCEEE
Confidence 999998653 211 12222222222 33354433322 2332 34568889999999999999998
Q ss_pred ec---cCCCHHHHHHHHHhC
Q 010948 259 ID---ALASKEEMKAFCEIS 275 (497)
Q Consensus 259 Ie---g~~s~eei~~i~~~v 275 (497)
+- |.-.++++.++.+.+
T Consensus 162 i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 162 IVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred EccCCCCCCHHHHHHHHHHH
Confidence 85 345677777766543
No 323
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=89.58 E-value=3.6 Score=37.83 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCC-CCCCHHHHHHHHHHHHhhcCcceEee
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT-GFISYGEMVDQGQLITQAVSIPVIGD 156 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~-g~ltldEml~~~r~I~ra~~iPVIaD 156 (497)
...+++++.. +..+...+++...++.+.+.|+|.+.++..--+ ...+.. .... +...+.+++..++||+++
T Consensus 85 ~~~~~~~~~~-~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~pv~a~ 156 (196)
T cd00564 85 VAEARALLGP-DLIIGVSTHSLEEALRAEELGADYVGFGPVFPT---PTKPGAGPPLG----LELLREIAELVEIPVVAI 156 (196)
T ss_pred HHHHHHHcCC-CCEEEeeCCCHHHHHHHhhcCCCEEEECCccCC---CCCCCCCCCCC----HHHHHHHHHhCCCCEEEE
Confidence 4455665543 455666778888888888899999998743211 111221 2223 333445555567999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEecCCC
Q 010948 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (497)
Q Consensus 157 ~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~ 188 (497)
|+.. .++++++.++|++||.+-...
T Consensus 157 -----GGi~--~~~i~~~~~~Ga~~i~~g~~i 181 (196)
T cd00564 157 -----GGIT--PENAAEVLAAGADGVAVISAI 181 (196)
T ss_pred -----CCCC--HHHHHHHHHcCCCEEEEehHh
Confidence 3331 256778889999999886654
No 324
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.56 E-value=1.6 Score=48.33 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=52.7
Q ss_pred eeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHH---HHHhhcC--cceEeeCCCCCCCH
Q 010948 91 HQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQ---LITQAVS--IPVIGDGDNGYGNA 164 (497)
Q Consensus 91 iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r---~I~ra~~--iPVIaD~DtGYG~~ 164 (497)
+.+=|+.++-.|+.+-++|+|+|.+| |.+-.++.--..+.+.-.++-+.+.++ ...+..+ +|||+|.---|+.
T Consensus 287 V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~g- 365 (502)
T PRK07107 287 VGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDY- 365 (502)
T ss_pred EEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchh-
Confidence 55557999999999999999999998 333111211223333223333333333 2333345 9999984333332
Q ss_pred HHHHHHHHHHHHhCccEEEecC
Q 010948 165 MNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 165 ~~V~rtVk~l~~AGaAGI~IED 186 (497)
.+ +|.+ .+||++|.|-.
T Consensus 366 -di---~KAl-a~GA~~vm~G~ 382 (502)
T PRK07107 366 -HM---TLAL-AMGADFIMLGR 382 (502)
T ss_pred -HH---HHHH-HcCCCeeeeCh
Confidence 23 3444 58999998833
No 325
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.55 E-value=12 Score=37.90 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=65.8
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEe--ccchhcccHHHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR--TDSRQALSLEESLRRS 246 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiAR--TDA~~~~~ldeaIeRA 246 (497)
+.++...++|+..|+|-...+ ..|...+-=.+.++.+++++.+++..++.|....+.+= .|+. ....+..++.+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~s---d~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~-~~~~~~~~~~~ 157 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSW---DLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGY-KANPEYALATL 157 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCC---HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccC-CCCHHHHHHHH
Confidence 456777889999999965432 12321111135678888888877776665543333211 1221 23567888999
Q ss_pred HHHHhcCCCEEEec---cCCCHHHHHHHHHhC
Q 010948 247 RAFADAGADVLFID---ALASKEEMKAFCEIS 275 (497)
Q Consensus 247 kAY~eAGAD~IfIe---g~~s~eei~~i~~~v 275 (497)
+++.++|+|.|.+. |..+++++..+.+.+
T Consensus 158 ~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l 189 (273)
T cd07941 158 KAAAEAGADWLVLCDTNGGTLPHEIAEIVKEV 189 (273)
T ss_pred HHHHhCCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999999875 445677777666543
No 326
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=89.43 E-value=16 Score=36.37 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=87.4
Q ss_pred CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 010948 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (497)
Q Consensus 150 ~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA 229 (497)
.+-.+++.|.|.....+-..-+++.++.||.-|-+==...--++|+ .++..+-|++++++.. +.-+.||-
T Consensus 59 ~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~--------~~~v~~ei~~v~~~~~--~~~lKvIl 128 (221)
T PRK00507 59 KVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGD--------WDAVEADIRAVVEAAG--GAVLKVII 128 (221)
T ss_pred eEEEEecccCCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCC--------HHHHHHHHHHHHHhcC--CceEEEEe
Confidence 3556679999976555555666788889999886432221112232 4667777787777642 33466665
Q ss_pred eccchhcccHHHHHHHHHHHHhcCCCEEEe-----ccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCC
Q 010948 230 RTDSRQALSLEESLRRSRAFADAGADVLFI-----DALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGF 304 (497)
Q Consensus 230 RTDA~~~~~ldeaIeRAkAY~eAGAD~IfI-----eg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv 304 (497)
-|.... -++..+-++...++|||.|-. .+-.+.+.++.+.+..+. . +-+-..||---.-...++-++|.
T Consensus 129 Et~~L~---~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~-~--~~IKasGGIrt~~~a~~~i~aGA 202 (221)
T PRK00507 129 ETCLLT---DEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGP-R--VGVKASGGIRTLEDALAMIEAGA 202 (221)
T ss_pred ecCcCC---HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCC-C--ceEEeeCCcCCHHHHHHHHHcCc
Confidence 555543 245556677788999995543 223578888888887652 1 12233333211124567778888
Q ss_pred CEEec
Q 010948 305 KLVAY 309 (497)
Q Consensus 305 ~~Vsy 309 (497)
.|+-.
T Consensus 203 ~riGt 207 (221)
T PRK00507 203 TRLGT 207 (221)
T ss_pred ceEcc
Confidence 88754
No 327
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=89.42 E-value=3.8 Score=39.77 Aligned_cols=133 Identities=18% Similarity=0.212 Sum_probs=71.9
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHh-cCCCeEEEEeccchhcccHHHHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE-SGSDIVIVARTDSRQALSLEESLRRSR 247 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~-~g~dfvIiARTDA~~~~~ldeaIeRAk 247 (497)
+.++.+...|++.|.|.=+ |.. +.-..++.-..++.+...... .+...-++.|........+ .+..+
T Consensus 12 ~~~~~a~~~g~D~vilDlE-------d~~--~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~---~~Dl~ 79 (221)
T PF03328_consen 12 KMLEKAAASGADFVILDLE-------DGV--PPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHI---ERDLE 79 (221)
T ss_dssp HHHHHHHTTCSSEEEEESS-------TTS--SGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHH---HHHHH
T ss_pred HHHHHHHhcCCCEEEEeCc-------ccC--CcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchh---hhhhh
Confidence 4456667889998887322 211 111122233333333333221 1235688889877543222 22234
Q ss_pred HHHhcCCCEEEeccCCCHHHHHHHHHhCCCCC----------ccceeeecCCCCCCCCHHHHHhc-CCCEEeccchHHHH
Q 010948 248 AFADAGADVLFIDALASKEEMKAFCEISPLVP----------KMANMLEGGGKTPILNPLELEEL-GFKLVAYPLSLIGV 316 (497)
Q Consensus 248 AY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP----------~~~N~l~~~g~tP~lt~~eL~el-Gv~~Vsyp~~ll~a 316 (497)
..++|+|.|++|.+.+.++++++.+.+...| .++=|+|.+. ....++++... |+..+.+|..=|.+
T Consensus 80 -~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~--gv~~~~eI~a~~~v~~l~~G~~Dls~ 156 (221)
T PF03328_consen 80 -ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPE--GVENLEEIAAVPGVDGLFFGPADLSA 156 (221)
T ss_dssp -HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHH--HHHTHHHHHTSTTEEEEEE-HHHHHH
T ss_pred -hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHH--HHhCHHhhcccCCeeEEEeCcHHHHh
Confidence 8889999999999999999999998653222 1223455311 12355666654 78888888764443
No 328
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.41 E-value=7 Score=43.10 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=42.7
Q ss_pred HHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhCccE
Q 010948 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 103 riae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAG 181 (497)
..+-++|.++|.+-. .+|+| .-+++.++.|.... ++|||+ |++. ..+.++.++++||++
T Consensus 231 ~~Lv~aGVd~i~~D~------a~g~~-------~~~~~~i~~i~~~~~~~~vi~----g~~~---t~~~~~~l~~~G~d~ 290 (475)
T TIGR01303 231 KALLDAGVDVLVIDT------AHGHQ-------VKMISAIKAVRALDLGVPIVA----GNVV---SAEGVRDLLEAGANI 290 (475)
T ss_pred HHHHHhCCCEEEEeC------CCCCc-------HHHHHHHHHHHHHCCCCeEEE----eccC---CHHHHHHHHHhCCCE
Confidence 333446777776542 24665 44566667776654 699999 4443 255667888999999
Q ss_pred EEecCC
Q 010948 182 IILEDQ 187 (497)
Q Consensus 182 I~IEDq 187 (497)
|++--+
T Consensus 291 i~vg~g 296 (475)
T TIGR01303 291 IKVGVG 296 (475)
T ss_pred EEECCc
Confidence 997544
No 329
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=89.40 E-value=6.4 Score=41.55 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=88.0
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
|+.+.++|++.|=++ +|-.. ++=.+.++.|.+.. +.-+++ ++.+ ..+.++...++|+.
T Consensus 29 a~~L~~~Gv~~IEvG----------~p~~~----~~~~e~i~~i~~~~~~~~i~~-----~~r~--~~~di~~a~~~g~~ 87 (365)
T TIGR02660 29 ARALDEAGVDELEVG----------IPAMG----EEERAVIRAIVALGLPARLMA-----WCRA--RDADIEAAARCGVD 87 (365)
T ss_pred HHHHHHcCCCEEEEe----------CCCCC----HHHHHHHHHHHHcCCCcEEEE-----EcCC--CHHHHHHHHcCCcC
Confidence 456778899988875 23211 11123445554432 122222 3321 24556777889999
Q ss_pred EEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 181 GI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
.|+|-...++- |...+-=.+.++.++++..+++..++.|..+. ..=.|+. ....+..++-+++..++|||.|.+.
T Consensus 88 ~i~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~-~~~ed~~-r~~~~~l~~~~~~~~~~Ga~~i~l~ 162 (365)
T TIGR02660 88 AVHISIPVSDL---QIEAKLRKDRAWVLERLARLVSFARDRGLFVS-VGGEDAS-RADPDFLVELAEVAAEAGADRFRFA 162 (365)
T ss_pred EEEEEEccCHH---HHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE-EeecCCC-CCCHHHHHHHHHHHHHcCcCEEEEc
Confidence 99998865421 21111112468888888877766666553332 2223332 2457888899999999999999885
Q ss_pred ---cCCCHHHHHHHHHhC
Q 010948 261 ---ALASKEEMKAFCEIS 275 (497)
Q Consensus 261 ---g~~s~eei~~i~~~v 275 (497)
|..+++++.++.+.+
T Consensus 163 DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 163 DTVGILDPFSTYELVRAL 180 (365)
T ss_pred ccCCCCCHHHHHHHHHHH
Confidence 345677777666543
No 330
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=89.39 E-value=5.6 Score=41.16 Aligned_cols=159 Identities=9% Similarity=0.055 Sum_probs=90.8
Q ss_pred HHHHHHHHhC-CcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHh
Q 010948 100 LSAKLVEKSG-FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (497)
Q Consensus 100 lSAriae~aG-fdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~A 177 (497)
-.|+.++++| +|++=+- |.--. -|.++. ..+.+.+.+.++.|.+.+++||++-+.--+ +..++.+.+..+.+.
T Consensus 109 ~~a~~~~~~g~ad~iElN~ScPn~---~~~~~~-g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~-~~~~~a~~~~~~~~~ 183 (310)
T PRK02506 109 TILKKIQASDFNGLVELNLSCPNV---PGKPQI-AYDFETTEQILEEVFTYFTKPLGVKLPPYF-DIVHFDQAAAIFNKF 183 (310)
T ss_pred HHHHHHhhcCCCCEEEEECCCCCC---CCcccc-ccCHHHHHHHHHHHHHhcCCccEEecCCCC-CHHHHHHHHHHhCcC
Confidence 3456667777 7887765 32211 133333 235667777788888888999999887755 556677777666677
Q ss_pred CccEEEecCC---------C-C-C----C-CCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 178 GFAGIILEDQ---------V-S-P----K-GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 178 GaAGI~IEDq---------~-~-p----K-rCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
|++||+.=.. . . | + ..|-+.|+.+-|.. ++.|+.+ ++..++++-|+|=.--. .-++
T Consensus 184 g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~a--l~~v~~~---~~~~~~~ipIig~GGI~---s~~d 255 (310)
T PRK02506 184 PLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTA--LANVRAF---YQRLNPSIQIIGTGGVK---TGRD 255 (310)
T ss_pred ceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHH--HHHHHHH---HHhcCCCCCEEEECCCC---CHHH
Confidence 8887654321 0 0 1 1 12334566666654 3333333 22233456677654332 2234
Q ss_pred HHHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhC
Q 010948 242 SLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEIS 275 (497)
Q Consensus 242 aIeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v 275 (497)
+..|..|||++|.+=.. ...+.+.++.+.+
T Consensus 256 ----a~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 288 (310)
T PRK02506 256 ----AFEHILCGASMVQVGTALHKEGPAVFERLTKEL 288 (310)
T ss_pred ----HHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHH
Confidence 45566899999876321 1344555555543
No 331
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=89.39 E-value=3.8 Score=49.90 Aligned_cols=128 Identities=23% Similarity=0.345 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhhcCcceEeeCCCC-------CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHH
Q 010948 134 SYGEMVDQGQLITQAVSIPVIGDGDNG-------YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSRE 205 (497)
Q Consensus 134 tldEml~~~r~I~ra~~iPVIaD~DtG-------YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~e 205 (497)
..++|..+++.+...++.||+|=...| |- ++......++++.+.| |++|=++ .||-++
T Consensus 237 gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~g--gv~IIGG----CCGTtP-------- 302 (1178)
T TIGR02082 237 GPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEG--GLNIVGG----CCGTTP-------- 302 (1178)
T ss_pred CHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhC--CCcEEEe----cCCCCH--------
Confidence 367899999999988889999844444 32 4667788888888752 3455566 588543
Q ss_pred HHHHHHHHHHHHHH---------------------hcCCCeEEEE-eccchh---------cccHHHHHHHHHHHHhcCC
Q 010948 206 EAVMRIKAAVDARK---------------------ESGSDIVIVA-RTDSRQ---------ALSLEESLRRSRAFADAGA 254 (497)
Q Consensus 206 e~~~KIrAAv~Ar~---------------------~~g~dfvIiA-RTDA~~---------~~~ldeaIeRAkAY~eAGA 254 (497)
++++.|+.++.... ..+..|++|+ |+...+ ..++++++++|+...++||
T Consensus 303 eHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~qve~GA 382 (1178)
T TIGR02082 303 DHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQVENGA 382 (1178)
T ss_pred HHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHHHHCCC
Confidence 45666666554211 0012477777 776642 3578999999999999999
Q ss_pred CEEEecc----CCCHHHHHHHHHhC
Q 010948 255 DVLFIDA----LASKEEMKAFCEIS 275 (497)
Q Consensus 255 D~IfIeg----~~s~eei~~i~~~v 275 (497)
|+|=|-+ +...++++++...+
T Consensus 383 ~iIDVn~~~~~vd~~eem~rvv~~i 407 (1178)
T TIGR02082 383 QILDINVDYGMLDGVAAMKRFLNLL 407 (1178)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHH
Confidence 9997643 34467888887543
No 332
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=89.37 E-value=17 Score=38.17 Aligned_cols=151 Identities=15% Similarity=0.083 Sum_probs=83.2
Q ss_pred HHHHHHHHhCCcEEEec---chhhhhhh----cccCCCCCCCHHH----HHHHHHHHHhhcCc-ceEeeCC-----CC--
Q 010948 100 LSAKLVEKSGFSFCFTS---GFSISAAR----LALPDTGFISYGE----MVDQGQLITQAVSI-PVIGDGD-----NG-- 160 (497)
Q Consensus 100 lSAriae~aGfdAI~vS---G~avSas~----lG~PD~g~ltldE----ml~~~r~I~ra~~i-PVIaD~D-----tG-- 160 (497)
-+|+.+.++|||+|-+- |+-++-.. -=..|.-.=+++. +++.++.|.++++. ||.+=+- .|
T Consensus 156 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~ 235 (338)
T cd02933 156 QAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMG 235 (338)
T ss_pred HHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCC
Confidence 57889999999999886 33333110 0112321113442 33445555555543 6665331 12
Q ss_pred CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccH
Q 010948 161 YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (497)
Q Consensus 161 YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~l 239 (497)
+| +.+...+.++.++++|++.|++-...... ... -..-+++++|+.++ +.+++++++-+
T Consensus 236 ~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~----~~~---~~~~~~~~~ik~~~------~ipvi~~G~i~------- 295 (338)
T cd02933 236 DSDPEATFSYLAKELNKRGLAYLHLVEPRVAG----NPE---DQPPDFLDFLRKAF------KGPLIAAGGYD------- 295 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecCCCCC----ccc---ccchHHHHHHHHHc------CCCEEEECCCC-------
Confidence 33 34677788999999999999995543211 000 01124455554432 35677777754
Q ss_pred HHHHHHHHHHHhcC-CCEEEec--cCCCHHHHHHHHH
Q 010948 240 EESLRRSRAFADAG-ADVLFID--ALASKEEMKAFCE 273 (497)
Q Consensus 240 deaIeRAkAY~eAG-AD~IfIe--g~~s~eei~~i~~ 273 (497)
.+.+..+.+.| ||+|.+- .+.+++.++++.+
T Consensus 296 ---~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~ 329 (338)
T cd02933 296 ---AESAEAALADGKADLVAFGRPFIANPDLVERLKN 329 (338)
T ss_pred ---HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhc
Confidence 23344444444 9999883 3456666666654
No 333
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.33 E-value=2 Score=44.48 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 010948 244 RRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~l 313 (497)
+.+....++|||.|.++.+. ++++++.++.+.. -|.. -+...||- ..-++.++++.|+..++.+...
T Consensus 210 ~ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v-~ieaSGGI-~~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 210 EQLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTV-LLESSGGL-TLDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred HHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCE-EEEEECCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 34455578999999999875 6888888865321 1222 12233343 2347899999999999987643
No 334
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=89.31 E-value=5.1 Score=41.94 Aligned_cols=109 Identities=25% Similarity=0.418 Sum_probs=75.6
Q ss_pred CcceEeeCCCCCC--CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEE
Q 010948 150 SIPVIGDGDNGYG--NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (497)
Q Consensus 150 ~iPVIaD~DtGYG--~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvI 227 (497)
.+|+-+- .|++ +++...+.++++.+.|..++||- .|. +.++-+++|++++++. |+++.|
T Consensus 125 ~v~~y~s--~~~~~~~~e~~~~~a~~~~~~Gf~~~Kik-------vg~-------~~~~d~~~v~~vRe~~---G~~~~l 185 (352)
T cd03328 125 SVPVYGS--GGFTSYDDDRLREQLSGWVAQGIPRVKMK-------IGR-------DPRRDPDRVAAARRAI---GPDAEL 185 (352)
T ss_pred CeEEEEe--cCCCCCCHHHHHHHHHHHHHCCCCEEEee-------cCC-------CHHHHHHHHHHHHHHc---CCCCeE
Confidence 3666542 2333 45667777888888999999992 221 2356678888888774 666655
Q ss_pred EEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCC---CHHHHHHHHHhCC-CCCcc
Q 010948 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDALA---SKEEMKAFCEISP-LVPKM 281 (497)
Q Consensus 228 iARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~---s~eei~~i~~~v~-~vP~~ 281 (497)
+-|+.....+++|++.++++++.| ..|+|-+- +.+.++++.+..| .+|..
T Consensus 186 --~vDaN~~~~~~~A~~~~~~l~~~~--~~~~EeP~~~~d~~~~~~l~~~~~~~iPIa 239 (352)
T cd03328 186 --FVDANGAYSRKQALALARAFADEG--VTWFEEPVSSDDLAGLRLVRERGPAGMDIA 239 (352)
T ss_pred --EEECCCCCCHHHHHHHHHHHHHhC--cchhhCCCChhhHHHHHHHHhhCCCCCCEE
Confidence 468888889999999999999864 56887653 5678888888732 25544
No 335
>PLN02489 homocysteine S-methyltransferase
Probab=89.31 E-value=4.2 Score=42.68 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCC----CCCccceeee
Q 010948 242 SLRRSRAFADAGADVLFIDALASKEEMKAFCEISP----LVPKMANMLE 286 (497)
Q Consensus 242 aIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~----~vP~~~N~l~ 286 (497)
--++++++.++|+|.|++|-+++.+|++.+++.+. .+|.++.+..
T Consensus 169 ~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~ 217 (335)
T PLN02489 169 HRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNS 217 (335)
T ss_pred HHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEe
Confidence 34568889999999999999999999988876432 3677666653
No 336
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=89.29 E-value=14 Score=37.73 Aligned_cols=122 Identities=21% Similarity=0.311 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 162 GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 162 G~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
+++..+.+.++++.+.|..+|+|- +|. +.++.+++|++++++. | ++.| +-|+......++
T Consensus 133 ~~~~~~~~~~~~~~~~Gf~~iKik-------~g~-------~~~~d~~~v~~lr~~~---g-~~~l--~vD~n~~~~~~~ 192 (316)
T cd03319 133 DTPEAMAAAAKKAAKRGFPLLKIK-------LGG-------DLEDDIERIRAIREAA---P-DARL--RVDANQGWTPEE 192 (316)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEE-------eCC-------ChhhHHHHHHHHHHhC---C-CCeE--EEeCCCCcCHHH
Confidence 467777888888889999999993 232 1245578888887663 4 4433 567777777899
Q ss_pred HHHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHH---Hh-cCCCEEeccchH
Q 010948 242 SLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLEL---EE-LGFKLVAYPLSL 313 (497)
Q Consensus 242 aIeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL---~e-lGv~~Vsyp~~l 313 (497)
|++.++++++.|. .|+|-+ .+.+.++++.+..+ +|...+ +. ..+..++ .+ -++..|..-...
T Consensus 193 A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~~~~-ipIa~~-----E~--~~~~~~~~~~~~~~~~d~v~~~~~~ 261 (316)
T cd03319 193 AVELLRELAELGV--ELIEQPVPAGDDDGLAYLRDKSP-LPIMAD-----ES--CFSAADAARLAGGGAYDGINIKLMK 261 (316)
T ss_pred HHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHhcCC-CCEEEe-----CC--CCCHHHHHHHHhcCCCCEEEEeccc
Confidence 9999999999865 455644 34578888888765 565433 21 2344443 33 357777664443
No 337
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.23 E-value=13 Score=35.08 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=78.5
Q ss_pred HHHHHHHHhh-cCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHH
Q 010948 139 VDQGQLITQA-VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (497)
Q Consensus 139 l~~~r~I~ra-~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~A 217 (497)
+..++.+.+. .++|+++|.-.-... ...++.+.++|+++|.+=+.. +.+...+-++++++
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~----~~~~~~~~~aGad~i~~h~~~--------------~~~~~~~~i~~~~~- 101 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAG----ALEAEMAFKAGADIVTVLGAA--------------PLSTIKKAVKAAKK- 101 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecccc----HHHHHHHHhcCCCEEEEEeeC--------------CHHHHHHHHHHHHH-
Confidence 4456666654 479998884433221 123578889999999986542 11112222222222
Q ss_pred HHhcCCCeEEE-EeccchhcccHHHHHHHHHHHHhcCCCEEEe-cc--------CCCHHHHHHHHHhCCCCCccceeeec
Q 010948 218 RKESGSDIVIV-ARTDSRQALSLEESLRRSRAFADAGADVLFI-DA--------LASKEEMKAFCEISPLVPKMANMLEG 287 (497)
Q Consensus 218 r~~~g~dfvIi-ARTDA~~~~~ldeaIeRAkAY~eAGAD~IfI-eg--------~~s~eei~~i~~~v~~vP~~~N~l~~ 287 (497)
.|..+.+. --... .+|.+ + +...|+|.+.+ ++ ....+.++++.+. +.+|. +..
T Consensus 102 ---~g~~~~v~~~~~~t-----~~e~~---~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i----~~~ 164 (202)
T cd04726 102 ---YGKEVQVDLIGVED-----PEKRA---K-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKV----AVA 164 (202)
T ss_pred ---cCCeEEEEEeCCCC-----HHHHH---H-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCCE----EEE
Confidence 24333321 12211 12222 3 66689999877 32 2345677777654 22343 233
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 288 GGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 288 ~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
||-+| -+..++.+.|+..+..|..++.
T Consensus 165 GGI~~-~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 165 GGITP-DTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred CCcCH-HHHHHHHhcCCCEEEEeehhcC
Confidence 45443 4678889999999999987764
No 338
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=89.19 E-value=7 Score=41.32 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=89.8
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
|+.+.++|++.|=++.... + -+| .+.++.+.+.. +..|.+= .. ...+.+++..++|+.
T Consensus 28 a~~L~~~Gv~~IEvG~p~~-------~------~~~-~e~i~~i~~~~~~~~v~~~-----~r--~~~~di~~a~~~g~~ 86 (363)
T TIGR02090 28 ARKLDELGVDVIEAGFPIA-------S------EGE-FEAIKKISQEGLNAEICSL-----AR--ALKKDIDKAIDCGVD 86 (363)
T ss_pred HHHHHHcCCCEEEEeCCCC-------C------hHH-HHHHHHHHhcCCCcEEEEE-----cc--cCHHHHHHHHHcCcC
Confidence 4567788999988764221 1 111 24455554432 2334332 21 124556777889999
Q ss_pred EEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 181 GI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
.|+|-...++- |...+-=.+.++.++++..+++..++.|..+.+.. .|+. ....+..++-++++.++|||.|.+.
T Consensus 87 ~i~i~~~~Sd~---~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~-eda~-r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 87 SIHTFIATSPI---HLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA-EDAT-RTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred EEEEEEcCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE-eecC-CCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 99997765432 21111112567778877777766665554333332 3443 2457888999999999999999874
Q ss_pred ---cCCCHHHHHHHHHhC
Q 010948 261 ---ALASKEEMKAFCEIS 275 (497)
Q Consensus 261 ---g~~s~eei~~i~~~v 275 (497)
|..+++++.++.+.+
T Consensus 162 DT~G~~~P~~v~~li~~l 179 (363)
T TIGR02090 162 DTVGVLTPQKMEELIKKL 179 (363)
T ss_pred CCCCccCHHHHHHHHHHH
Confidence 345678888877764
No 339
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=89.18 E-value=9.7 Score=40.56 Aligned_cols=146 Identities=19% Similarity=0.254 Sum_probs=99.0
Q ss_pred HHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 010948 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (497)
Q Consensus 104 iae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~ 183 (497)
-++++|+|.+=++ .|| .|-......|.+..++|||+|+-+= ++.+-...+.|++.+.
T Consensus 44 ~L~~aG~dIVRvt----------v~~------~e~A~A~~~Ik~~~~vPLVaDiHf~-------~rla~~~~~~g~~k~R 100 (361)
T COG0821 44 ALERAGCDIVRVT----------VPD------MEAAEALKEIKQRLNVPLVADIHFD-------YRLALEAAECGVDKVR 100 (361)
T ss_pred HHHHcCCCEEEEe----------cCC------HHHHHHHHHHHHhCCCCEEEEeecc-------HHHHHHhhhcCcceEE
Confidence 3567888887765 222 2334566788888899999998654 4555566788999999
Q ss_pred ecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh------------cccHHHHHHHHHHHHh
Q 010948 184 LEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------------ALSLEESLRRSRAFAD 251 (497)
Q Consensus 184 IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~------------~~~ldeaIeRAkAY~e 251 (497)
|.-+- .+.+ +|++..++++++.|.++.|=...-++. ...++.|++-++.+++
T Consensus 101 INPGN-------ig~~---------~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 101 INPGN-------IGFK---------DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEE 164 (361)
T ss_pred ECCcc-------cCcH---------HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 97752 2211 277888888777677777665554431 1236889999999999
Q ss_pred cCCCEEEeccCCC-----HHHHHHHHHhCCCCCccceeeecCC
Q 010948 252 AGADVLFIDALAS-----KEEMKAFCEISPLVPKMANMLEGGG 289 (497)
Q Consensus 252 AGAD~IfIeg~~s-----~eei~~i~~~v~~vP~~~N~l~~~g 289 (497)
.|=+=|.+-.-.| .+..+.+++... .|+=+-++|.|+
T Consensus 165 l~f~~i~iS~K~Sdv~~~v~aYr~lA~~~d-yPLHLGvTEAG~ 206 (361)
T COG0821 165 LGFDDIKVSVKASDVQLMVAAYRLLAKRCD-YPLHLGVTEAGM 206 (361)
T ss_pred CCCCcEEEEEEcCCHHHHHHHHHHHHHhcC-CCcccceecccC
Confidence 9998777654322 344455566664 688788888654
No 340
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=89.17 E-value=17 Score=38.17 Aligned_cols=134 Identities=12% Similarity=0.023 Sum_probs=84.6
Q ss_pred eecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCC-CHHHHHHH
Q 010948 92 QGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRT 170 (497)
Q Consensus 92 v~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG-~~~~V~rt 170 (497)
..||-.+.-..+.+.++|++.+-+.-... . .+...++++.+ +..+.-+.+-..+.+. +++.+.+.
T Consensus 83 l~pg~~~~~dl~~a~~~gvd~iri~~~~~------e-------~d~~~~~i~~a-k~~G~~v~~~l~~s~~~~~e~l~~~ 148 (333)
T TIGR03217 83 LLPGIGTVHDLKAAYDAGARTVRVATHCT------E-------ADVSEQHIGMA-RELGMDTVGFLMMSHMTPPEKLAEQ 148 (333)
T ss_pred eccCccCHHHHHHHHHCCCCEEEEEeccc------h-------HHHHHHHHHHH-HHcCCeEEEEEEcccCCCHHHHHHH
Confidence 34666677777888889999888653211 0 02233444443 3334555554444443 57889999
Q ss_pred HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH
Q 010948 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (497)
Q Consensus 171 Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~ 250 (497)
+++++++|+..|.|-|.. |. ..++++.++++++++.. +++.-|--.+ -+.+--++.-+.+..
T Consensus 149 a~~~~~~Ga~~i~i~DT~-----G~------~~P~~v~~~v~~l~~~l---~~~i~ig~H~----HnnlGla~ANslaAi 210 (333)
T TIGR03217 149 AKLMESYGADCVYIVDSA-----GA------MLPDDVRDRVRALKAVL---KPETQVGFHA----HHNLSLAVANSIAAI 210 (333)
T ss_pred HHHHHhcCCCEEEEccCC-----CC------CCHHHHHHHHHHHHHhC---CCCceEEEEe----CCCCchHHHHHHHHH
Confidence 999999999999999975 33 34577888888887653 3333332221 112334566677778
Q ss_pred hcCCCEE
Q 010948 251 DAGADVL 257 (497)
Q Consensus 251 eAGAD~I 257 (497)
+|||+.|
T Consensus 211 ~aGa~~i 217 (333)
T TIGR03217 211 EAGATRI 217 (333)
T ss_pred HhCCCEE
Confidence 9999974
No 341
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.15 E-value=15 Score=38.35 Aligned_cols=159 Identities=14% Similarity=0.075 Sum_probs=85.6
Q ss_pred HHHHHHHhCCcEEEec-chhhhhhh-cccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCC---HHHHHHHHHHHH
Q 010948 101 SAKLVEKSGFSFCFTS-GFSISAAR-LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN---AMNVKRTVKGYI 175 (497)
Q Consensus 101 SAriae~aGfdAI~vS-G~avSas~-lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~---~~~V~rtVk~l~ 175 (497)
.|+++++.|||+|=+= |.-..... -|+=..-.-..+.+.+.++.+.+++++||+|=+--|+-+ ..+..+.++.++
T Consensus 72 aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~ 151 (318)
T TIGR00742 72 CAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVS 151 (318)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHH
Confidence 3566777788877544 22211100 011111123445666777788888899999999888753 246778889999
Q ss_pred HhCccEEEecCCCCCCCCCCCCCc-cccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCC
Q 010948 176 KAGFAGIILEDQVSPKGCGHTRGR-KVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGA 254 (497)
Q Consensus 176 ~AGaAGI~IEDq~~pKrCGH~~gk-~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGA 254 (497)
++|++.|.+...+. ...|..+.. .-.+.-. -+.|++++++. +++-|++-=|-.. .+++.+ +.+ ||
T Consensus 152 ~~G~~~itvHgRt~-~~qg~sg~~~~~~~~~~-~~~i~~vk~~~----~~ipVi~NGdI~s---~~da~~----~l~-g~ 217 (318)
T TIGR00742 152 GKGCQNFIVHARKA-WLSGLSPKENREIPPLR-YERVYQLKKDF----PHLTIEINGGIKN---SEQIKQ----HLS-HV 217 (318)
T ss_pred HcCCCEEEEeCCch-hhcCCCccccccCCchh-HHHHHHHHHhC----CCCcEEEECCcCC---HHHHHH----HHh-CC
Confidence 99999999987641 011222110 0111111 12333333332 2455555555443 233333 333 99
Q ss_pred CEEEec--cCCCHHHHHHHHH
Q 010948 255 DVLFID--ALASKEEMKAFCE 273 (497)
Q Consensus 255 D~IfIe--g~~s~eei~~i~~ 273 (497)
|+|+|- .+.++-.+.++.+
T Consensus 218 dgVMigRgal~nP~if~~~~~ 238 (318)
T TIGR00742 218 DGVMVGREAYENPYLLANVDR 238 (318)
T ss_pred CEEEECHHHHhCCHHHHHHHH
Confidence 999983 3444445555544
No 342
>PRK15452 putative protease; Provisional
Probab=89.11 E-value=7.7 Score=42.43 Aligned_cols=138 Identities=11% Similarity=0.102 Sum_probs=76.9
Q ss_pred HHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHH
Q 010948 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (497)
Q Consensus 170 tVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY 249 (497)
.++..+++||++|-+....+--|.. ....+.+++.+-++ -.++.|..+.+..-+=.. ...+++..+-.+..
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~~----~~~f~~edl~eav~----~ah~~g~kvyvt~n~i~~-e~el~~~~~~l~~l 85 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRVR----NNEFNHENLALGIN----EAHALGKKFYVVVNIAPH-NAKLKTFIRDLEPV 85 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhhh----ccCCCHHHHHHHHH----HHHHcCCEEEEEecCcCC-HHHHHHHHHHHHHH
Confidence 3456678999999997665322221 12334555443333 333335444443222111 23466777777778
Q ss_pred HhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHH
Q 010948 250 ADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAM 321 (497)
Q Consensus 250 ~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am 321 (497)
.++|+|+|.+-. ...+..+.+..|.+|+.+..-. ..+...+.+-|.++|+++|..+.-+-..-++.|
T Consensus 86 ~~~gvDgvIV~d---~G~l~~~ke~~p~l~ih~stql--ni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i 152 (443)
T PRK15452 86 IAMKPDALIMSD---PGLIMMVREHFPEMPIHLSVQA--NAVNWATVKFWQQMGLTRVILSRELSLEEIEEI 152 (443)
T ss_pred HhCCCCEEEEcC---HHHHHHHHHhCCCCeEEEEecc--cCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHH
Confidence 899999999854 4566666565555444322111 112234567788888888887766644444444
No 343
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=89.00 E-value=29 Score=39.31 Aligned_cols=176 Identities=22% Similarity=0.307 Sum_probs=0.0
Q ss_pred HhCCcEEEecchhhhhhhc---ccCCCCCCCHHHHHHHHHHHHhhc-CcceEeeCCCC-CCC--------HHHHHHH---
Q 010948 107 KSGFSFCFTSGFSISAARL---ALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNG-YGN--------AMNVKRT--- 170 (497)
Q Consensus 107 ~aGfdAI~vSG~avSas~l---G~PD~g~ltldEml~~~r~I~ra~-~iPVIaD~DtG-YG~--------~~~V~rt--- 170 (497)
++|.|+|.+.+|+.+...+ |+.+. ..++...+-.+++.+ +.++.+=+.-| ||. .+...+.
T Consensus 54 ~AGAdvi~TnTy~as~~~l~~~g~~~~----~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~~ 129 (612)
T PRK08645 54 EAGADVIQTNTFGANRIKLKRYGLEDK----VKEINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFRE 129 (612)
T ss_pred HhCCCEEecCcccccHHHHHhcCchHH----HHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_pred -HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcC-CCeEEEEeccchh----cccHHHHHH
Q 010948 171 -VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG-SDIVIVARTDSRQ----ALSLEESLR 244 (497)
Q Consensus 171 -Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g-~dfvIiARTDA~~----~~~ldeaIe 244 (497)
++.|.++||+.+-+|-... +.-+++++++.++.+ .++++--..+... ...++++++
T Consensus 130 ~~~~l~~~gvD~l~~ET~~~------------------~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~ 191 (612)
T PRK08645 130 QIDALLEEGVDGLLLETFYD------------------LEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALK 191 (612)
T ss_pred HHHHHHhcCCCEEEEEccCC------------------HHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHH
Q ss_pred HHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCCC---------------HHHHHhcCCCEE
Q 010948 245 RSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---------------PLELEELGFKLV 307 (497)
Q Consensus 245 RAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~lt---------------~~eL~elGv~~V 307 (497)
.+ .+.|+++|-+-|...++.+..+.+.+.. +..++-+....|...... ..++.++|+++|
T Consensus 192 ~~---~~~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~Ga~ii 267 (612)
T PRK08645 192 EL---VAAGADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQGVRLI 267 (612)
T ss_pred HH---HhCCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHhCCCEE
No 344
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=88.87 E-value=14 Score=37.37 Aligned_cols=148 Identities=14% Similarity=0.058 Sum_probs=80.3
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccE
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAG 181 (497)
|+.++++|++.|=++-.+.+. .....-....+ .+.+..+..... .+.++.+=...+-.+ .+.++...+.|+..
T Consensus 26 a~~L~~~GVd~IEvG~~~~~~-~~~~~~~~~~~-~~~~~~i~~~~~-~~~~~~~~~~~~~~~----~~~l~~a~~~gv~~ 98 (266)
T cd07944 26 YRALAAAGIDYVEIGYRSSPE-KEFKGKSAFCD-DEFLRRLLGDSK-GNTKIAVMVDYGNDD----IDLLEPASGSVVDM 98 (266)
T ss_pred HHHHHHCCCCEEEeecCCCCc-cccCCCccCCC-HHHHHHHHhhhc-cCCEEEEEECCCCCC----HHHHHHHhcCCcCE
Confidence 466788999999776222110 11111112222 333333333321 134444433333222 33456667889999
Q ss_pred EEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec-
Q 010948 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID- 260 (497)
Q Consensus 182 I~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe- 260 (497)
|+|-... -. ++++..+++..++.|.. +...=.|+.. ...+..++-++.+.++|||.|.+.
T Consensus 99 iri~~~~-------------~~----~~~~~~~i~~ak~~G~~-v~~~~~~a~~-~~~~~~~~~~~~~~~~g~~~i~l~D 159 (266)
T cd07944 99 IRVAFHK-------------HE----FDEALPLIKAIKEKGYE-VFFNLMAISG-YSDEELLELLELVNEIKPDVFYIVD 159 (266)
T ss_pred EEEeccc-------------cc----HHHHHHHHHHHHHCCCe-EEEEEEeecC-CCHHHHHHHHHHHHhCCCCEEEEec
Confidence 9996532 01 33333333333333432 3333344433 456888889999999999999885
Q ss_pred --cCCCHHHHHHHHHhC
Q 010948 261 --ALASKEEMKAFCEIS 275 (497)
Q Consensus 261 --g~~s~eei~~i~~~v 275 (497)
|.-+++++.++.+.+
T Consensus 160 T~G~~~P~~v~~lv~~l 176 (266)
T cd07944 160 SFGSMYPEDIKRIISLL 176 (266)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 456778888777654
No 345
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=88.86 E-value=8.3 Score=41.16 Aligned_cols=98 Identities=17% Similarity=0.305 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
++....+.++++.+.|..++||-- |. -+.++-+++|++++++. |+++.+ +.|+.....+++|
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikv-------g~------~~~~~di~~v~avRe~~---G~~~~l--~vDaN~~w~~~~A 221 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKI-------GG------APLDEDLRRIEAALDVL---GDGARL--AVDANGRFDLETA 221 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-------CC------CCHHHHHHHHHHHHHhc---CCCCeE--EEECCCCCCHHHH
Confidence 455677788888889999999931 11 12355678888888763 666655 5688888889999
Q ss_pred HHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhCCCCCcc
Q 010948 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v~~vP~~ 281 (497)
++.++++++.+ .-|+|-+ .+.+.++++.+..+ +|..
T Consensus 222 ~~~~~~l~~~~--~~~iEeP~~~~d~~~~~~L~~~~~-iPIa 260 (385)
T cd03326 222 IAYAKALAPYG--LRWYEEPGDPLDYALQAELADHYD-GPIA 260 (385)
T ss_pred HHHHHHhhCcC--CCEEECCCCccCHHHHHHHHhhCC-CCEE
Confidence 99999998875 5577754 35678888888765 5644
No 346
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.76 E-value=2.9 Score=42.23 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhcCcceEeeCCCC-CCCH----HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHH
Q 010948 138 MVDQGQLITQAVSIPVIGDGDNG-YGNA----MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIK 212 (497)
Q Consensus 138 ml~~~r~I~ra~~iPVIaD~DtG-YG~~----~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIr 212 (497)
.+...-.+++..++++..- | +-.. ..+.+-++...+.|...|-|-|+.. -+|.++.+.-|+
T Consensus 42 ~l~eki~la~~~~V~v~~G---Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~-----------~i~~~~~~rlI~ 107 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVYPG---GTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSM-----------EISLEERCNLIE 107 (237)
T ss_pred HHHHHHHHHHHcCCeEeCC---ccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCcc-----------CCCHHHHHHHHH
Confidence 4444444556677887542 2 1111 1233444567789999999998752 256666655555
Q ss_pred HHHHHHHhcCCCeEEE---Eeccc--hhcccHHHHHHHHHHHHhcCCCEEEeccCC--------------CHHHHHHHHH
Q 010948 213 AAVDARKESGSDIVIV---ARTDS--RQALSLEESLRRSRAFADAGADVLFIDALA--------------SKEEMKAFCE 273 (497)
Q Consensus 213 AAv~Ar~~~g~dfvIi---ARTDA--~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~--------------s~eei~~i~~ 273 (497)
.+++. +|.+. ++-+. ....+.++.|+++++..+||||.|++|+-. ..+.+.+|.+
T Consensus 108 ~~~~~------g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~ 181 (237)
T TIGR03849 108 RAKDN------GFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAE 181 (237)
T ss_pred HHHhC------CCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHh
Confidence 55433 33332 11111 123567899999999999999999999821 2356777777
Q ss_pred hCC
Q 010948 274 ISP 276 (497)
Q Consensus 274 ~v~ 276 (497)
+++
T Consensus 182 ~l~ 184 (237)
T TIGR03849 182 NVD 184 (237)
T ss_pred hCC
Confidence 654
No 347
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=88.73 E-value=2.8 Score=43.85 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=45.6
Q ss_pred HHHHHHHh------cCCCEEEeccC--------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEec
Q 010948 244 RRSRAFAD------AGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (497)
Q Consensus 244 eRAkAY~e------AGAD~IfIeg~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsy 309 (497)
+.++.+.+ +|||.|+++.+ .+.+++++.++.++.. .+ ++..|....-++.++++.||..++.
T Consensus 214 eea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~~-~~---lEaSGGIt~~ni~~yA~tGVD~Is~ 289 (308)
T PLN02716 214 EEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELINGR-FE---TEASGNVTLDTVHKIGQTGVTYISS 289 (308)
T ss_pred HHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCCC-ce---EEEECCCCHHHHHHHHHcCCCEEEe
Confidence 44555667 99999999987 2678899888866531 12 3332323334679999999999998
Q ss_pred cch
Q 010948 310 PLS 312 (497)
Q Consensus 310 p~~ 312 (497)
+..
T Consensus 290 Gal 292 (308)
T PLN02716 290 GAL 292 (308)
T ss_pred Ccc
Confidence 763
No 348
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.70 E-value=2.3 Score=46.53 Aligned_cols=90 Identities=17% Similarity=0.093 Sum_probs=57.3
Q ss_pred CceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccC--CCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHH
Q 010948 89 GVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALP--DTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMN 166 (497)
Q Consensus 89 ~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~P--D~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~ 166 (497)
-++++-++-++-.|+.+.++|+|+|-++...-+ ..+-. +.-.++--+.+..+...++..++|||+|. |.-++..
T Consensus 270 ~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs--~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadG--Gi~~~~d 345 (486)
T PRK05567 270 VQIIAGNVATAEAARALIEAGADAVKVGIGPGS--ICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADG--GIRYSGD 345 (486)
T ss_pred CCEEEeccCCHHHHHHHHHcCCCEEEECCCCCc--cccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcC--CCCCHHH
Confidence 467888999999999999999999987622211 11111 11123434455555555555679999983 4445545
Q ss_pred HHHHHHHHHHhCccEEEecC
Q 010948 167 VKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IED 186 (497)
+. |. ..+||++|.+-.
T Consensus 346 i~---kA-la~GA~~v~~G~ 361 (486)
T PRK05567 346 IA---KA-LAAGASAVMLGS 361 (486)
T ss_pred HH---HH-HHhCCCEEEECc
Confidence 54 33 357999999833
No 349
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=88.66 E-value=7.7 Score=38.90 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=75.2
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCC
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~D 158 (497)
+.|-+..+..+++.|.-|-..--+..+.++|||.|.++= .||-+....+.+.-++.++.+.+ .+.|||+-
T Consensus 117 ~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTL-------sGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAE-- 186 (229)
T COG3010 117 EELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTL-------SGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAE-- 186 (229)
T ss_pred HHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEeccc-------ccccCCCCCCCCCcHHHHHHHHh-CCCeEEee--
Confidence 344444666788999999999999999999999998772 13433222444444556666666 78999974
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHH
Q 010948 159 NGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (497)
Q Consensus 159 tGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv 215 (497)
..|.+|+.+. +.++.||.+|.+-.- +.-+++.+.+...+.
T Consensus 187 Gr~~tP~~Ak----~a~~~Ga~aVvVGsA-------------ITRp~~It~~F~~~i 226 (229)
T COG3010 187 GRYNTPEQAK----KAIEIGADAVVVGSA-------------ITRPEEITQWFVDAI 226 (229)
T ss_pred CCCCCHHHHH----HHHHhCCeEEEECcc-------------cCCHHHHHHHHHHHH
Confidence 4577776655 456789999988432 455677776655443
No 350
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.63 E-value=2.6 Score=44.91 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCC-ceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCC-CCCHHHHHHHHHHHHhh------
Q 010948 78 AKSLRQILELPG-VHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTG-FISYGEMVDQGQLITQA------ 148 (497)
Q Consensus 78 a~~Lr~ll~~~~-~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g-~ltldEml~~~r~I~ra------ 148 (497)
-..+.+++++-+ +++.-++.+.-.|+-+.++|+|+|.++ |.+-. ..+....+ .++.-..+..+...++.
T Consensus 176 ~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~--~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~ 253 (368)
T PRK08649 176 PLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAA--CTSRGVLGIGVPMATAIADVAAARRDYLDETG 253 (368)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcC--CCCcccCCCCcCHHHHHHHHHHHHHHhhhhhc
Confidence 344555555433 454458999999998888999999998 32211 11110111 23322222222222221
Q ss_pred -cCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 149 -VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 149 -~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
.++|||+|.- +.+...+. |. +.+||++|.+
T Consensus 254 ~~~vpVIAdGG--I~~~~dia---kA-lalGAd~Vm~ 284 (368)
T PRK08649 254 GRYVHVIADGG--IGTSGDIA---KA-IACGADAVML 284 (368)
T ss_pred CCCCeEEEeCC--CCCHHHHH---HH-HHcCCCeecc
Confidence 1599999843 33333344 33 3589999988
No 351
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=88.53 E-value=3.9 Score=43.53 Aligned_cols=132 Identities=22% Similarity=0.289 Sum_probs=74.7
Q ss_pred CcceEe-eCCCCCCCHHHHHHHHHHHHHhCccEE-EecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHH----HHhcCC
Q 010948 150 SIPVIG-DGDNGYGNAMNVKRTVKGYIKAGFAGI-ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA----RKESGS 223 (497)
Q Consensus 150 ~iPVIa-D~DtGYG~~~~V~rtVk~l~~AGaAGI-~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~A----r~~~g~ 223 (497)
++||+. -||+= .+. +.+..|.+.|.=|| |-+. +.|+.++.++..+.. ..+...
T Consensus 37 ~iPivsa~MDtV-te~----~mAiama~~Gglgvih~~~----------------~~e~q~~~v~~vK~~~~~a~~d~~~ 95 (352)
T PF00478_consen 37 KIPIVSAPMDTV-TES----EMAIAMARLGGLGVIHRNM----------------SIEEQAEEVKKVKRYYPNASKDEKG 95 (352)
T ss_dssp SSSEEE-SSTTT-SSH----HHHHHHHHTTSEEEEESSS----------------CHHHHHHHHHHHHTHHTTHHBHTTS
T ss_pred cCceEecCcccc-chH----HHHHHHHHhcCCceecCCC----------------CHHHHHHHHhhhccccccccccccc
Confidence 689874 44442 222 34455666655554 4332 345666666555432 222123
Q ss_pred CeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC--CC---HHHHHHHHHhCCCCCccceeeecCCCCCCCCHHH
Q 010948 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL--AS---KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE 298 (497)
Q Consensus 224 dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~--~s---~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~e 298 (497)
.++|-|-.-. .++.++|++++.+||+|.|+|+.- .+ .+.++.+.+.+|.+|+++-=+. |+ -..++
T Consensus 96 ~l~V~aavg~-----~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~----T~-e~a~~ 165 (352)
T PF00478_consen 96 RLLVAAAVGT-----RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVV----TY-EGAKD 165 (352)
T ss_dssp CBCEEEEEES-----STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-----SH-HHHHH
T ss_pred cceEEEEecC-----CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccC----CH-HHHHH
Confidence 4555544322 145689999999999999999753 33 3466677777776554431111 11 14688
Q ss_pred HHhcCCCEEeccch
Q 010948 299 LEELGFKLVAYPLS 312 (497)
Q Consensus 299 L~elGv~~Vsyp~~ 312 (497)
|.+.|+.-|..|..
T Consensus 166 L~~aGad~vkVGiG 179 (352)
T PF00478_consen 166 LIDAGADAVKVGIG 179 (352)
T ss_dssp HHHTT-SEEEESSS
T ss_pred HHHcCCCEEEEecc
Confidence 99999999988743
No 352
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.48 E-value=2.5 Score=44.87 Aligned_cols=91 Identities=11% Similarity=0.015 Sum_probs=57.8
Q ss_pred CceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHH
Q 010948 89 GVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNV 167 (497)
Q Consensus 89 ~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V 167 (497)
-.+++-|+-++-.|+-+..+|+|++-++ |-+-.++. -.--.-.++.-.-+..+...++..++|||+|.---|.+ ++
T Consensus 152 ~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtT-r~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sG--DI 228 (346)
T PRK05096 152 KTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTT-RVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPG--DV 228 (346)
T ss_pred CcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccC-ccccccChhHHHHHHHHHHHHHHcCCCEEecCCccccc--HH
Confidence 3567779999999999999999999888 43322221 11111223333445556666677789999995433322 23
Q ss_pred HHHHHHHHHhCccEEEecC
Q 010948 168 KRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 168 ~rtVk~l~~AGaAGI~IED 186 (497)
. |.| .+||+.|.|-.
T Consensus 229 ~---KAl-aaGAd~VMlGs 243 (346)
T PRK05096 229 A---KAF-GGGADFVMLGG 243 (346)
T ss_pred H---HHH-HcCCCEEEeCh
Confidence 3 333 58999999944
No 353
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=88.45 E-value=2.1 Score=43.13 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=66.6
Q ss_pred CCCCCccccCHHHHHHHHHHHHHHHHh-cCCCeEEEEeccc------hhccc----HHHHHHHHHHHHhcCCCEEEeccC
Q 010948 194 GHTRGRKVVSREEAVMRIKAAVDARKE-SGSDIVIVARTDS------RQALS----LEESLRRSRAFADAGADVLFIDAL 262 (497)
Q Consensus 194 GH~~gk~lvp~ee~~~KIrAAv~Ar~~-~g~dfvIiARTDA------~~~~~----ldeaIeRAkAY~eAGAD~IfIeg~ 262 (497)
|-.+|----++..+.+||..++.++.. .....+++---|- ..... -+..++-|+.++++|||+|.+++-
T Consensus 5 GilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~N 84 (230)
T COG1794 5 GILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTN 84 (230)
T ss_pred EeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 444444445677888999888887653 2223333322222 11111 234567799999999999999874
Q ss_pred CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEec
Q 010948 263 ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (497)
Q Consensus 263 ~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsy 309 (497)
+-=..+.++-+.++ +|. +++++. |.+++...|+++|-.
T Consensus 85 T~H~~~d~iq~~~~-iPl-lhIida-------Ta~~ik~~g~kkvgL 122 (230)
T COG1794 85 TMHKVADDIQKAVG-IPL-LHIIDA-------TAKAIKAAGAKKVGL 122 (230)
T ss_pred cHHHHHHHHHHhcC-CCe-ehHHHH-------HHHHHHhcCCceeEE
Confidence 32234444545554 674 566653 789999999999965
No 354
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=88.42 E-value=7.9 Score=43.08 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=88.8
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcC---------cceEeeCCCCCCCH--HHHHHH
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS---------IPVIGDGDNGYGNA--MNVKRT 170 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~---------iPVIaD~DtGYG~~--~~V~rt 170 (497)
|+.+.++|++.|=++. |... .++.+.++.|.+... .|.+. +++.. ..+...
T Consensus 112 a~~L~~~GVd~IEvG~----------Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~----a~~R~~~~dId~a 173 (503)
T PLN03228 112 ARQLAKLRVDIMEVGF----------PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVIC----GIARCKKRDIEAA 173 (503)
T ss_pred HHHHHHcCCCEEEEeC----------CCCC----HHHHHHHHHHHHhcccccccccccceEEe----eecccCHhhHHHH
Confidence 5667788998877643 2211 444555677765321 23332 45543 345555
Q ss_pred HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH
Q 010948 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (497)
Q Consensus 171 Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~ 250 (497)
++....+|+..|+|-=..++- |...+-=.+.++.++++..+++..++.|...+...=.|+.. .+.+-.++-+++..
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~---h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~R-td~efl~~~~~~a~ 249 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDI---HMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGR-SDKEFLCKILGEAI 249 (503)
T ss_pred HHhhcccCCCEEEEEecCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccc-cCHHHHHHHHHHHH
Confidence 555555678888876433211 22111113578889998888877776554323333334432 24577788888999
Q ss_pred hcCCCEEEec---cCCCHHHHHHHHHh
Q 010948 251 DAGADVLFID---ALASKEEMKAFCEI 274 (497)
Q Consensus 251 eAGAD~IfIe---g~~s~eei~~i~~~ 274 (497)
++|||.|.+. |..+++++.++.+.
T Consensus 250 ~~Gad~I~l~DTvG~~tP~~v~~lV~~ 276 (503)
T PLN03228 250 KAGATSVGIADTVGINMPHEFGELVTY 276 (503)
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999875 44566777666654
No 355
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=88.38 E-value=11 Score=40.06 Aligned_cols=146 Identities=17% Similarity=0.255 Sum_probs=96.4
Q ss_pred HHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 010948 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (497)
Q Consensus 104 iae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~ 183 (497)
-++++|++.+=++ .|| .+-....+.|.+.+++|||||+-+-| +.+-.-+++|++.|.
T Consensus 42 ~L~~aGceiVRva----------vp~------~~~A~al~~I~~~~~iPlVADIHFd~-------~lAl~a~~~g~dkiR 98 (346)
T TIGR00612 42 ALEEAGCDIVRVT----------VPD------RESAAAFEAIKEGTNVPLVADIHFDY-------RLAALAMAKGVAKVR 98 (346)
T ss_pred HHHHcCCCEEEEc----------CCC------HHHHHhHHHHHhCCCCCEEEeeCCCc-------HHHHHHHHhccCeEE
Confidence 4567898887654 333 22344567788889999999998774 333344578999999
Q ss_pred ecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh------------cccHHHHHHHHHHHHh
Q 010948 184 LEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------------ALSLEESLRRSRAFAD 251 (497)
Q Consensus 184 IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~------------~~~ldeaIeRAkAY~e 251 (497)
|.-+ +.+. -+|++..++++++.+..+.|=...-+.. ..-.+.|++-++.+++
T Consensus 99 INPG-------Nig~---------~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~ 162 (346)
T TIGR00612 99 INPG-------NIGF---------RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEK 162 (346)
T ss_pred ECCC-------CCCC---------HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9775 4443 2466666666665566666554444321 1136789999999999
Q ss_pred cCCCEEEeccCC-----CHHHHHHHHHhCCCCCccceeeecCC
Q 010948 252 AGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGG 289 (497)
Q Consensus 252 AGAD~IfIeg~~-----s~eei~~i~~~v~~vP~~~N~l~~~g 289 (497)
.|=+=|.+-.-. ..+..+.+++..+ +|+=+-++|.|.
T Consensus 163 ~~F~diviS~KsSdv~~~i~ayr~la~~~d-yPLHlGVTEAG~ 204 (346)
T TIGR00612 163 LGFRNVVLSMKASDVAETVAAYRLLAERSD-YPLHLGVTEAGM 204 (346)
T ss_pred CCCCcEEEEEEcCCHHHHHHHHHHHHhhCC-CCceeccccCCC
Confidence 999888775432 2344555556654 788888888743
No 356
>PLN02535 glycolate oxidase
Probab=88.35 E-value=2.3 Score=45.43 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=58.3
Q ss_pred CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc--CcceEeeCCCCCCCHH
Q 010948 88 PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAM 165 (497)
Q Consensus 88 ~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~--~iPVIaD~DtGYG~~~ 165 (497)
+.|+++-|+-+.-.|+.+.++|+|+|.+|+.+- ...|.+..|++- +..+.+++ .+|||+| .|..+..
T Consensus 223 ~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GG-----r~~d~~~~t~~~----L~ev~~av~~~ipVi~d--GGIr~g~ 291 (364)
T PLN02535 223 NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGA-----RQLDYSPATISV----LEEVVQAVGGRVPVLLD--GGVRRGT 291 (364)
T ss_pred CCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCc-----CCCCCChHHHHH----HHHHHHHHhcCCCEEee--CCCCCHH
Confidence 468999999999999999999999999997652 123544444433 33344333 5999987 3444444
Q ss_pred HHHHHHHHHHHhCccEEEecCC
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQ 187 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq 187 (497)
.+. +....||.+|.+---
T Consensus 292 Dv~----KALalGA~aV~vGr~ 309 (364)
T PLN02535 292 DVF----KALALGAQAVLVGRP 309 (364)
T ss_pred HHH----HHHHcCCCEEEECHH
Confidence 444 334689999999553
No 357
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=88.23 E-value=8.1 Score=39.96 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=76.4
Q ss_pred CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 010948 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (497)
Q Consensus 150 ~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA 229 (497)
.+|+.+=+++ .....+.++++.+.|...+||-= |. -+.++-+++|++++++. |++..|
T Consensus 109 ~~~~~~~i~~----~~~~~~~a~~~~~~G~~~~KvKv-------G~------~~~~~d~~~v~air~~~---g~~~~l-- 166 (320)
T PRK02714 109 PLSYSALLPA----GEAALQQWQTLWQQGYRTFKWKI-------GV------DPLEQELKIFEQLLERL---PAGAKL-- 166 (320)
T ss_pred CCceeeecCC----CHHHHHHHHHHHHcCCCEEEEEE-------CC------CChHHHHHHHHHHHHhc---CCCCEE--
Confidence 3555543332 24566777888888999999822 21 13455688888887764 556555
Q ss_pred eccchhcccHHHHHHHHHHHHhc-CCCEEEeccCC---CHHHHHHHHHhCCCCCccc
Q 010948 230 RTDSRQALSLEESLRRSRAFADA-GADVLFIDALA---SKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 230 RTDA~~~~~ldeaIeRAkAY~eA-GAD~IfIeg~~---s~eei~~i~~~v~~vP~~~ 282 (497)
|.|+......++|++.++.+.+. +-+..|+|-+- +.+.++++.+..+ +|+.+
T Consensus 167 ~vDaN~~w~~~~A~~~~~~l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~-~Pia~ 222 (320)
T PRK02714 167 RLDANGGLSLEEAKRWLQLCDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQ-TPIAL 222 (320)
T ss_pred EEECCCCCCHHHHHHHHHHHhhccCCCccEEECCCCcccHHHHHHHHHhCC-CCEEE
Confidence 77888888899999999999873 56778888653 5678888888765 56543
No 358
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=88.19 E-value=11 Score=36.09 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 288 GGKTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 288 ~g~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
||-++ -+..++.+.|+..|+.+..++.+
T Consensus 177 GGI~~-~nv~~l~~~GaD~vvvgSai~~~ 204 (220)
T PRK05581 177 GGINA-DNIKECAEAGADVFVAGSAVFGA 204 (220)
T ss_pred CCCCH-HHHHHHHHcCCCEEEEChhhhCC
Confidence 36665 37788999999999999887753
No 359
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=88.11 E-value=10 Score=39.84 Aligned_cols=90 Identities=11% Similarity=0.225 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
++..+...++++.+.|...+||. + +++|++++++ .|+++.+ +.|+.....+++|
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiK---------------v------~~~v~avre~---~G~~~~l--~vDaN~~w~~~~A 179 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQ---------------L------PKLFEAVREK---FGFEFHL--LHDVHHRLTPNQA 179 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeC---------------H------HHHHHHHHhc---cCCCceE--EEECCCCCCHHHH
Confidence 35566677788888899999982 1 5677777766 3566655 4588888889999
Q ss_pred HHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhCCCCCcc
Q 010948 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v~~vP~~ 281 (497)
++.++++.+.+ ..|+|-+ .+.+.++++.+..+ +|+.
T Consensus 180 ~~~~~~l~~~~--l~~iEeP~~~~d~~~~~~L~~~~~-~pia 218 (361)
T cd03322 180 ARFGKDVEPYR--LFWMEDPTPAENQEAFRLIRQHTA-TPLA 218 (361)
T ss_pred HHHHHHhhhcC--CCEEECCCCcccHHHHHHHHhcCC-CCEE
Confidence 99999998764 5577754 34578888888765 5654
No 360
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=88.09 E-value=2.3 Score=44.28 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 010948 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~ 311 (497)
++.+..+.++|||.|.++.+. .++++++++..+. .. .++..|....-++.++++.|+..++.+.
T Consensus 218 leea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~-~~---~ieaSGGI~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 218 LDELDQALKAGADIIMLDNFT-TEQMREAVKRTNG-RA---LLEVSGNVTLETLREFAETGVDFISVGA 281 (296)
T ss_pred HHHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC-Ce---EEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 345556778999999999875 5899999987653 11 2332232323467999999999999876
No 361
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=88.03 E-value=14 Score=39.67 Aligned_cols=147 Identities=20% Similarity=0.262 Sum_probs=97.2
Q ss_pred HHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 010948 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (497)
Q Consensus 104 iae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~ 183 (497)
-++++|++.+=++ .|| .+-....+.|.+..++|||||+-+-| +.+-.-+++|+++|.
T Consensus 50 ~L~~aGceiVRva----------v~~------~~~a~al~~I~~~~~iPlvADIHFd~-------~lAl~a~~~G~~~iR 106 (360)
T PRK00366 50 RLARAGCEIVRVA----------VPD------MEAAAALPEIKKQLPVPLVADIHFDY-------RLALAAAEAGADALR 106 (360)
T ss_pred HHHHcCCCEEEEc----------cCC------HHHHHhHHHHHHcCCCCEEEecCCCH-------HHHHHHHHhCCCEEE
Confidence 4567899887654 333 23345567788888999999998765 333344578999999
Q ss_pred ecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh------------cccHHHHHHHHHHHHh
Q 010948 184 LEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------------ALSLEESLRRSRAFAD 251 (497)
Q Consensus 184 IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~------------~~~ldeaIeRAkAY~e 251 (497)
|.-+ +.+. .-+|+++.++++++.+..+.|=...-+.. ..-.+.|++-++.+++
T Consensus 107 INPG-------Nig~--------~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~ 171 (360)
T PRK00366 107 INPG-------NIGK--------RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEE 171 (360)
T ss_pred ECCC-------CCCc--------hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9764 3321 13466667777666566666554444421 1136789999999999
Q ss_pred cCCCEEEeccCC-----CHHHHHHHHHhCCCCCccceeeecCC
Q 010948 252 AGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGG 289 (497)
Q Consensus 252 AGAD~IfIeg~~-----s~eei~~i~~~v~~vP~~~N~l~~~g 289 (497)
.|=+=|.+-.-. ..+..+.+++..+ +|+=+-++|.|.
T Consensus 172 ~~f~~iviS~KsS~v~~~i~ayrlla~~~d-yPLHlGvTEAG~ 213 (360)
T PRK00366 172 LGFDDIKISVKASDVQDLIAAYRLLAKRCD-YPLHLGVTEAGM 213 (360)
T ss_pred CCCCcEEEEEEcCCHHHHHHHHHHHHhcCC-CCceecccCCCC
Confidence 999988875432 2344555556554 788888888743
No 362
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=87.97 E-value=10 Score=39.13 Aligned_cols=146 Identities=10% Similarity=0.059 Sum_probs=78.7
Q ss_pred HHHHHHHHhC--CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHH---------HHHHHHHHHH
Q 010948 78 AKSLRQILEL--PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYG---------EMVDQGQLIT 146 (497)
Q Consensus 78 a~~Lr~ll~~--~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltld---------Eml~~~r~I~ 146 (497)
..+|-+.++. ++..++-+==-....|..++. |+.++| ++. ..+|+.|.-++--+ .+...++.+.
T Consensus 109 T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~---Av~~GG-g~~-HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r 183 (277)
T TIGR01334 109 THKMVTLAKKISPMAVVACTRKAIPLTRPLAVK---AVLAAG-GVI-HRIGLSETLLVFANHRTFLNDNFDWGGAIGRLK 183 (277)
T ss_pred HHHHHHHHHhcCCCCEEEecCCCCCChhHHHHH---HHHhCC-CcC-eecCCchhheehHHHHHHhCCcccHHHHHHHHH
Confidence 3445555543 333333333333445666654 445454 332 47888887433222 2223333333
Q ss_pred hhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCe
Q 010948 147 QAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI 225 (497)
Q Consensus 147 ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~df 225 (497)
+.. ..+|.|+.+ + .+-+++..++|++.|.+... ++++..+-++.+ +..++.+
T Consensus 184 ~~~~~~kIeVEv~----t----leea~ea~~~GaDiI~lDn~---------------~~e~l~~~v~~l----~~~~~~~ 236 (277)
T TIGR01334 184 QTAPERKITVEAD----T----IEQALTVLQASPDILQLDKF---------------TPQQLHHLHERL----KFFDHIP 236 (277)
T ss_pred HhCCCCCEEEECC----C----HHHHHHHHHcCcCEEEECCC---------------CHHHHHHHHHHH----hccCCCE
Confidence 332 477999987 3 33345667899999999532 234443333322 1113444
Q ss_pred EEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCC
Q 010948 226 VIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA 263 (497)
Q Consensus 226 vIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~ 263 (497)
.|-+ .+ ++ .++.+.+|++.|+|.|.+-++.
T Consensus 237 ~lea----sG--GI--~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 237 TLAA----AG--GI--NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred EEEE----EC--CC--CHHHHHHHHhcCCCEEEeCcce
Confidence 4332 22 11 2578999999999999887764
No 363
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=87.92 E-value=4.6 Score=42.69 Aligned_cols=95 Identities=16% Similarity=0.020 Sum_probs=59.4
Q ss_pred HHHHHHHh-CCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc--CcceEe
Q 010948 79 KSLRQILE-LPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIG 155 (497)
Q Consensus 79 ~~Lr~ll~-~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~--~iPVIa 155 (497)
+.+.++.+ .+.|+++-++-+.-.|+.+.++|+++|.+|+.+- . .-|...-|++ .+..++.....+ .+|||+
T Consensus 203 ~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG--~---~~d~~~~~~~-~L~~i~~~~~~~~~~~~vi~ 276 (344)
T cd02922 203 DDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGG--R---QLDTAPAPIE-VLLEIRKHCPEVFDKIEVYV 276 (344)
T ss_pred HHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCc--c---cCCCCCCHHH-HHHHHHHHHHHhCCCceEEE
Confidence 34444443 2468888899999999999999999999996541 1 1243333333 333344433222 599998
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEec
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~IE 185 (497)
|. |.-+...+. +.+..||++|.|-
T Consensus 277 ~G--GIr~G~Dv~----kalaLGA~aV~iG 300 (344)
T cd02922 277 DG--GVRRGTDVL----KALCLGAKAVGLG 300 (344)
T ss_pred eC--CCCCHHHHH----HHHHcCCCEEEEC
Confidence 83 222333343 3456899999984
No 364
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=87.90 E-value=1.5 Score=42.40 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=61.4
Q ss_pred CeEEEEeccchhc-----ccHHHHHHHHHHHHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCCccceeeecCCCCCC
Q 010948 224 DIVIVARTDSRQA-----LSLEESLRRSRAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (497)
Q Consensus 224 dfvIiARTDA~~~-----~~ldeaIeRAkAY~eAGAD~IfIeg~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (497)
.+-|||--.-... ...++.++.|++|+++||++|.+... .+.+.++.+.+.+ .+|..+ .++-.+.
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-~iPi~~----~~~i~~~ 84 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-SLPVLR----KDFIIDP 84 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-CCCEEE----CCeecCH
Confidence 4666665444321 12356789999999999999987521 2557777777765 356542 1122222
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHH
Q 010948 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIK 329 (497)
Q Consensus 294 lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~ 329 (497)
...+++.++|+..|..+...+.. ..+++.++..+
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~--~~~~~~~~~~~ 118 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDD--EQLKELYELAR 118 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCH--HHHHHHHHHHH
Confidence 35788999999999987665442 33444444443
No 365
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=87.85 E-value=17 Score=38.10 Aligned_cols=158 Identities=13% Similarity=0.009 Sum_probs=79.8
Q ss_pred HHHHHHHHhCCcEEEecc---hhhhh----hhcccCCCCCCCHHH----HHHHHHHHHhhcCc--ceEe-----e-CCCC
Q 010948 100 LSAKLVEKSGFSFCFTSG---FSISA----ARLALPDTGFISYGE----MVDQGQLITQAVSI--PVIG-----D-GDNG 160 (497)
Q Consensus 100 lSAriae~aGfdAI~vSG---~avSa----s~lG~PD~g~ltldE----ml~~~r~I~ra~~i--PVIa-----D-~DtG 160 (497)
-.|+.+.++|||+|-+-+ +-++. ...-..|.-.=+++. +++.+++|.++++. ||.+ | .+.|
T Consensus 145 ~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G 224 (343)
T cd04734 145 DAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGG 224 (343)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCC
Confidence 467888899999997763 22211 111122321224442 34556666666653 4332 1 1122
Q ss_pred CCCHHHHHHHHHHHHHhC-ccEEEecCCCCCCCC--CCCCCccccC---HHHHHHHHHHHHHHHHhcCCCeEEEEeccch
Q 010948 161 YGNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGC--GHTRGRKVVS---REEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AG-aAGI~IEDq~~pKrC--GH~~gk~lvp---~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~ 234 (497)
+ +.+...+.++.++++| ++.|+|-........ .|.......+ .-+++++|+.++ +.+++.+++-...
T Consensus 225 ~-~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~------~ipvi~~G~i~~~ 297 (343)
T cd04734 225 L-SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV------DLPVFHAGRIRDP 297 (343)
T ss_pred C-CHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc------CCCEEeeCCCCCH
Confidence 2 3456778899999998 899999543321110 0100000011 123444444322 3567777664221
Q ss_pred hcccHHHHHHHHHHHH-hcCCCEEEec--cCCCHHHHHHHHH
Q 010948 235 QALSLEESLRRSRAFA-DAGADVLFID--ALASKEEMKAFCE 273 (497)
Q Consensus 235 ~~~~ldeaIeRAkAY~-eAGAD~IfIe--g~~s~eei~~i~~ 273 (497)
+.+.... +-+||+|.+- .+.+++...++.+
T Consensus 298 ---------~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~ 330 (343)
T cd04734 298 ---------AEAEQALAAGHADMVGMTRAHIADPHLVAKARE 330 (343)
T ss_pred ---------HHHHHHHHcCCCCeeeecHHhHhCccHHHHHHc
Confidence 2222223 3569999983 3455556665554
No 366
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=87.84 E-value=6.2 Score=42.61 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
++..+.+.++++.+.|..++||-- | .+.++-+++|++++++ .|+++.+ +.|+....+.++|
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKv-------g-------~~~~~d~~~v~avRe~---vG~~~~L--~vDaN~~w~~~~A 256 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKV-------G-------ADLEDDIRRCRLAREV---IGPDNKL--MIDANQRWDVPEA 256 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC-------C-------CCHHHHHHHHHHHHHh---cCCCCeE--EEECCCCCCHHHH
Confidence 456677888888889999999932 2 1345668888888876 3667665 4577777889999
Q ss_pred HHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhCC--CCCcc
Q 010948 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISP--LVPKM 281 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v~--~vP~~ 281 (497)
++.++++++.|. .|+|-+ .+.+.++++.+..+ .+|..
T Consensus 257 ~~~~~~L~~~~l--~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa 298 (415)
T cd03324 257 IEWVKQLAEFKP--WWIEEPTSPDDILGHAAIRKALAPLPIGVA 298 (415)
T ss_pred HHHHHHhhccCC--CEEECCCCCCcHHHHHHHHHhcccCCCcee
Confidence 999999998764 477754 35678888888763 25543
No 367
>PRK07695 transcriptional regulator TenI; Provisional
Probab=87.81 E-value=3.8 Score=39.22 Aligned_cols=95 Identities=22% Similarity=0.295 Sum_probs=59.9
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~ 157 (497)
.+.+|+.+ ++.++...+++.-.++.++++|+|.+..+-..-+.+ .|+.....+ ...+.+...+++||++=
T Consensus 86 ~~~~r~~~--~~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~~t~~---k~~~~~~g~----~~l~~~~~~~~ipvia~- 155 (201)
T PRK07695 86 VRSVREKF--PYLHVGYSVHSLEEAIQAEKNGADYVVYGHVFPTDC---KKGVPARGL----EELSDIARALSIPVIAI- 155 (201)
T ss_pred HHHHHHhC--CCCEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCC---CCCCCCCCH----HHHHHHHHhCCCCEEEE-
Confidence 45666655 355666799999999999999999998762111111 222222222 33455556668999873
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEecCCC
Q 010948 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (497)
Q Consensus 158 DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~ 188 (497)
|+. + ..+++.+.++|++||-+=...
T Consensus 156 ----GGI-~-~~~~~~~~~~Ga~gvav~s~i 180 (201)
T PRK07695 156 ----GGI-T-PENTRDVLAAGVSGIAVMSGI 180 (201)
T ss_pred ----cCC-C-HHHHHHHHHcCCCEEEEEHHH
Confidence 433 1 244567778999999875544
No 368
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=87.75 E-value=32 Score=34.84 Aligned_cols=183 Identities=20% Similarity=0.165 Sum_probs=107.1
Q ss_pred ceeecccCChHHH-HHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCC-HHH
Q 010948 90 VHQGPACFDALSA-KLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN-AMN 166 (497)
Q Consensus 90 ~iv~p~ayDalSA-riae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~-~~~ 166 (497)
.++..-..+--.+ .++++.+=...++- |+-+.. . +-|+ .++.+.+... +|++|+=.+ + +..
T Consensus 14 livaLD~~~~~~~~~~~~~~~~~~~~~Kvg~~l~~-~-~g~~-----------~~~el~~~~~-~VflDlK~~--DIpnT 77 (240)
T COG0284 14 LIVALDVPTEEEALAFVDKLGPTVDFVKVGKPLVA-F-FGAD-----------ILEELKARGK-KVFLDLKLA--DIPNT 77 (240)
T ss_pred eEEEECCCCHHHHHHHHHHhhccccEEEEchHHHH-h-ccHH-----------HHHHHHHhCC-ceEEeeecc--cchHH
Confidence 3666666666666 56666653333333 566542 1 2222 3344433333 999998765 5 345
Q ss_pred HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhc----------
Q 010948 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA---------- 236 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~---------- 236 (497)
+...++...+.|++++++---. | .+-+++++++....+. +|++.|---..
T Consensus 78 ~~~~~~~~~~~g~d~vtvH~~~---------G---------~~~~~~~~e~~~~~~~--~vl~vT~lts~~~~~~~~~~~ 137 (240)
T COG0284 78 VALAAKAAADLGADAVTVHAFG---------G---------FDMLRAAKEALEAGGP--FVLAVTSLTSMGELQLAELGI 137 (240)
T ss_pred HHHHHHHhhhcCCcEEEEeCcC---------C---------HHHHHHHHHHHhhcCc--eEEEEEeCCCchhhhhhhccc
Confidence 6677788889999999984321 2 2346677777765443 77777754221
Q ss_pred --ccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCC---------CCCHHHHHhcCCC
Q 010948 237 --LSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP---------ILNPLELEELGFK 305 (497)
Q Consensus 237 --~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP---------~lt~~eL~elGv~ 305 (497)
...+..++.++.-.++|-|.++.- .++.+++.+..+ |.+.=++. |--| ..++.+-...|..
T Consensus 138 ~~~~~~~v~~~a~~~~~~G~dgvv~~----~~e~~~ir~~~g--~~~~iltP--GIg~~~~~gdQ~~~~t~~~A~~~Gad 209 (240)
T COG0284 138 NSSLEEQVLRLAKLAGEAGLDGVVCS----AEEVAAIREILG--PDFLILTP--GIGAGSQGGDQGRVMTPGEAVRAGAD 209 (240)
T ss_pred cchHHHHHHHHHHHhccCCceEEEcC----HHHHHHHHHhcC--CCcEEECC--CcCcCcCCCCcccccCHHHHHhcCCC
Confidence 114567777888888999988863 345555544432 11111221 2222 3467777778888
Q ss_pred EEeccchHHHH
Q 010948 306 LVAYPLSLIGV 316 (497)
Q Consensus 306 ~Vsyp~~ll~a 316 (497)
.++.|-..+.+
T Consensus 210 ~ivVGR~I~~a 220 (240)
T COG0284 210 YIVVGRPITQA 220 (240)
T ss_pred EEEEChhhhcC
Confidence 88887766554
No 369
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=87.70 E-value=9.9 Score=39.14 Aligned_cols=179 Identities=19% Similarity=0.185 Sum_probs=107.4
Q ss_pred HHHHHHHHh--CCCceeec------------ccCChHHH-HHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHH
Q 010948 78 AKSLRQILE--LPGVHQGP------------ACFDALSA-KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQG 142 (497)
Q Consensus 78 a~~Lr~ll~--~~~~iv~p------------~ayDalSA-riae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~ 142 (497)
..+|.++++ ++..+.+| +-.|.--. +.+.++|.+++.+. .+++ .++.|+-+
T Consensus 10 ~~rl~rif~~~tG~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~-~G~~--~~~~~~y~----------- 75 (265)
T COG1830 10 LRRLARIFNRGTGRLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMT-PGIA--RSVHRGYA----------- 75 (265)
T ss_pred HHHHHHHhcCCCCCEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEec-HhHH--hhcCcccc-----------
Confidence 345667776 55555555 22333322 45556799999988 2333 24555543
Q ss_pred HHHHhhcCcceEeeCCCC----CCC-HHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHH
Q 010948 143 QLITQAVSIPVIGDGDNG----YGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (497)
Q Consensus 143 r~I~ra~~iPVIaD~DtG----YG~-~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~A 217 (497)
.++|+|+=...- +.+ ...+..+++..+++||++|-.-=-. |.. +-.+++++|..+++.
T Consensus 76 ------~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~-----Gse------~e~~~i~~~~~v~~~ 138 (265)
T COG1830 76 ------HDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYV-----GSE------TEREMIENISQVVED 138 (265)
T ss_pred ------CCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEec-----CCc------chHHHHHHHHHHHHH
Confidence 134555433322 111 1234566788888998877553222 110 125788999999998
Q ss_pred HHhcCCCeEEE--Eeccchhc---ccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCC
Q 010948 218 RKESGSDIVIV--ARTDSRQA---LSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKT 291 (497)
Q Consensus 218 r~~~g~dfvIi--ARTDA~~~---~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~t 291 (497)
+++.|-++++. -|...... .+-+..---++.-+|.|||.|=..-+.+.+.++++++.-+ +|++ +.+|.|+
T Consensus 139 a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~-vpVv---iaGG~k~ 213 (265)
T COG1830 139 AHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAACG-VPVV---IAGGPKT 213 (265)
T ss_pred HHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhCC-CCEE---EeCCCCC
Confidence 88887776653 35444321 2333344456677899999999988888899999998776 6653 4554454
No 370
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=87.65 E-value=29 Score=36.70 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=91.9
Q ss_pred HHHHHHHHhCC--CceeecccCChHHHHHHHHhCCcEEEec-chh--hhhhhcccCCCCCCCHHHHHHHHHHHH---hhc
Q 010948 78 AKSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTS-GFS--ISAARLALPDTGFISYGEMVDQGQLIT---QAV 149 (497)
Q Consensus 78 a~~Lr~ll~~~--~~iv~p~ayDalSAriae~aGfdAI~vS-G~a--vSas~lG~PD~g~ltldEml~~~r~I~---ra~ 149 (497)
.+.++.+.+.+ ..+.+.+-...-..+.+.++|++.+.+. +.+ ..-..++ .+.+|.++.+.... +..
T Consensus 51 ~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~~~~~~~~~~~~~i~~ak~~ 124 (363)
T TIGR02090 51 FEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK------KSRDEVLEKAVEAVEYAKEH 124 (363)
T ss_pred HHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHc
Confidence 34455555433 2333333334444566677899988775 211 1101122 56777666555443 334
Q ss_pred CcceEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEE
Q 010948 150 SIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (497)
Q Consensus 150 ~iPVIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi 228 (497)
+..|.+.+++.+- ++..+.+.++.+.++|+..|.|-|.. | ...++++.+.|+.+++.. +..|-
T Consensus 125 G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~-----G------~~~P~~v~~li~~l~~~~-----~~~l~ 188 (363)
T TIGR02090 125 GLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTV-----G------VLTPQKMEELIKKLKENV-----KLPIS 188 (363)
T ss_pred CCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-----C------ccCHHHHHHHHHHHhccc-----CceEE
Confidence 6778888766643 67889999999999999999999975 3 334566767776665432 22222
Q ss_pred EeccchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 229 ARTDSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 229 ARTDA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
..+ -+++--++.-+.+..+|||+.|
T Consensus 189 ~H~----Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 189 VHC----HNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred EEe----cCCCChHHHHHHHHHHCCCCEE
Confidence 221 1223345667777789999975
No 371
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=87.65 E-value=7.6 Score=41.00 Aligned_cols=167 Identities=23% Similarity=0.253 Sum_probs=95.9
Q ss_pred eecccCChHHHHH------HHHhCCcEEEecchhhhhhhcccCC-CCCCCHH---HHHHHHHHHHhhc-CcceEeeC---
Q 010948 92 QGPACFDALSAKL------VEKSGFSFCFTSGFSISAARLALPD-TGFISYG---EMVDQGQLITQAV-SIPVIGDG--- 157 (497)
Q Consensus 92 v~p~ayDalSAri------ae~aGfdAI~vSG~avSas~lG~PD-~g~ltld---Eml~~~r~I~ra~-~iPVIaD~--- 157 (497)
.|||.|=..--.+ +.+.|.+++++=|.--. -.-| .+.-.++ =+...++.|.... ++-||+|.
T Consensus 47 smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi~~----~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc 122 (324)
T PF00490_consen 47 SMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVIDP----SKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLC 122 (324)
T ss_dssp TSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE-SC----SC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-ST
T ss_pred CCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeCCc----ccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccc
Confidence 4677654433333 33469999887543100 0111 1111122 2445566676666 47788884
Q ss_pred ---CCC----------CC-CHH---HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHh
Q 010948 158 ---DNG----------YG-NAM---NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (497)
Q Consensus 158 ---DtG----------YG-~~~---~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~ 220 (497)
++| += |.. ...+.+-.+.+|||+.|---|- ++| ||.|++++.++
T Consensus 123 ~YT~hGHcGil~~~~g~idND~Tl~~Lak~Al~~A~AGADiVAPSdM--------MDG-----------rV~aIR~aLd~ 183 (324)
T PF00490_consen 123 EYTSHGHCGILDDEDGEIDNDETLERLAKQALSHAEAGADIVAPSDM--------MDG-----------RVGAIREALDE 183 (324)
T ss_dssp TTBTSSSSSEB-CTTSSBEHHHHHHHHHHHHHHHHHHT-SEEEE-S----------TT-----------HHHHHHHHHHH
T ss_pred cccCCCceEEEECCCCeEecHHHHHHHHHHHHHHHHhCCCeeccccc--------cCC-----------HHHHHHHHHHh
Confidence 223 21 122 3445556677899999988774 333 55555555554
Q ss_pred cC-CCeEEEEeccchhc--------------------------ccHHHHHHHHHHHHhcCCCEEEe-ccCCCHHHHHHHH
Q 010948 221 SG-SDIVIVARTDSRQA--------------------------LSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFC 272 (497)
Q Consensus 221 ~g-~dfvIiARTDA~~~--------------------------~~ldeaIeRAkAY~eAGAD~IfI-eg~~s~eei~~i~ 272 (497)
.| .+.-|++-+--++. ..-+||++.+..=.+-|||+|+| |+++..+.++++.
T Consensus 184 ~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k 263 (324)
T PF00490_consen 184 AGFSDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADILMVKPALPYLDIIRRVK 263 (324)
T ss_dssp TTCTTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSGGGHHHHHHHH
T ss_pred CCCCCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecchhHHHHHHHHH
Confidence 33 46778876644320 13689999999999999999999 8899999999999
Q ss_pred HhCCCCCccc
Q 010948 273 EISPLVPKMA 282 (497)
Q Consensus 273 ~~v~~vP~~~ 282 (497)
+.+. +|+.+
T Consensus 264 ~~~~-~P~~a 272 (324)
T PF00490_consen 264 ERFD-LPVAA 272 (324)
T ss_dssp HHCT-S-EEE
T ss_pred HhcC-CCEEE
Confidence 9884 67643
No 372
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=87.62 E-value=3.6 Score=44.18 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=54.8
Q ss_pred CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHH
Q 010948 88 PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNV 167 (497)
Q Consensus 88 ~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V 167 (497)
+.++++-|+-+.-.|+.+.++|+|+|.+|+.+-- ..|...-|++-+.+..+.+. .++||++|. |+-+...+
T Consensus 245 ~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr-----~~d~~~~t~~~L~~i~~a~~--~~~~vi~dG--GIr~g~Di 315 (381)
T PRK11197 245 DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGR-----QLDGVLSSARALPAIADAVK--GDITILADS--GIRNGLDV 315 (381)
T ss_pred CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCC-----CCCCcccHHHHHHHHHHHhc--CCCeEEeeC--CcCcHHHH
Confidence 5689999999999999999999999999975521 22433333332222222221 259999983 33344444
Q ss_pred HHHHHHHHHhCccEEEe
Q 010948 168 KRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 168 ~rtVk~l~~AGaAGI~I 184 (497)
. |. ...||++|.+
T Consensus 316 ~---KA-LaLGA~~V~i 328 (381)
T PRK11197 316 V---RM-IALGADTVLL 328 (381)
T ss_pred H---HH-HHcCcCceeE
Confidence 4 33 3479999987
No 373
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=87.43 E-value=0.88 Score=50.33 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCCEEEeccCCC--H---HHHHHHHHhCCCCCccc-eeeecCCCCCCCCHHHHHhcCCCEEecc
Q 010948 240 EESLRRSRAFADAGADVLFIDALAS--K---EEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYP 310 (497)
Q Consensus 240 deaIeRAkAY~eAGAD~IfIeg~~s--~---eei~~i~~~v~~vP~~~-N~l~~~g~tP~lt~~eL~elGv~~Vsyp 310 (497)
++..+|++++.+||||+|++.+.+- . +.++++.+.+|..++++ |+.- .-....+.++|+..|..+
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t------~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVT------MYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCC------HHHHHHHHHcCcCEEEEC
Confidence 5778999999999999999987632 2 56777777777655432 3321 124578899999999664
No 374
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=87.39 E-value=29 Score=35.28 Aligned_cols=202 Identities=19% Similarity=0.189 Sum_probs=105.5
Q ss_pred HHHHHHhCCCceeecccC-----ChHH-----HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc
Q 010948 80 SLRQILELPGVHQGPACF-----DALS-----AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV 149 (497)
Q Consensus 80 ~Lr~ll~~~~~iv~p~ay-----DalS-----Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~ 149 (497)
+|+++++++++++....+ |+.. +..+.+.+.+++-++=.. .| -+...-+..+..+.+..
T Consensus 1 ~~~~~l~~~~~~~s~E~~PPk~~~~~~~l~~~~~~l~~~~pd~vsVTd~~-----~~------~~~~~s~~~a~~l~~~~ 69 (287)
T PF02219_consen 1 KFQQKLKKGEFVVSFELFPPKGADGEEKLLEAAERLKDLGPDFVSVTDNP-----GG------SSRMMSLLAAAKLLKET 69 (287)
T ss_dssp --HHHHHTSS-EEEEEE---SSHHHHHHHHHHHHHHHTT--SEEEE---G-----CG------TTHHHHHHHHHHHHHHT
T ss_pred ChhHHHhCCCCEEEEEEeCCCCchHHHHHHHHHHHhcCCCCCEEEeecCC-----CC------cccCCcHHHHHHHHHHh
Confidence 478888888876554433 3221 222333456677666111 11 13344455566777667
Q ss_pred CcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEE-
Q 010948 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV- 228 (497)
Q Consensus 150 ~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi- 228 (497)
++++|+=+-.=--+...+......+.++|+..|.+=-+..|+.-.| ..+++.+....++-|+.+++.. +..|-|-
T Consensus 70 g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~-~~~~~~~~~~~~~Li~~i~~~~---~~~~~i~v 145 (287)
T PF02219_consen 70 GIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDPPKGGDH-FAKPVFDFDYALDLIRLIRQEY---GDDFSIGV 145 (287)
T ss_dssp T--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS-----TTS-SSHHHHHHHHHHHH---GGGSEEEE
T ss_pred CCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCcc-ccCCCchhHHHHHHHHHHHHhc---Cccccccc
Confidence 7887766554323677888888899999999999877776664333 3344333322334444444321 2223332
Q ss_pred -Eeccc-hhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCC----CCCccceeeecCCCCCCCCHHHHHhc
Q 010948 229 -ARTDS-RQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISP----LVPKMANMLEGGGKTPILNPLELEEL 302 (497)
Q Consensus 229 -ARTDA-~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~----~vP~~~N~l~~~g~tP~lt~~eL~el 302 (497)
+--+. -....++.-++|.++=.+||||.++---+-+.+.+.++.+.+. .+|.++.++ |..+...+..+
T Consensus 146 a~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~~~pIi~GI~------p~~s~~~~~~~ 219 (287)
T PF02219_consen 146 AGYPEGHPEAPDFEAELKRLKKKIDAGADFIITQPFFDAEAFERFLDRLREAGIDVPIIPGIM------PLTSAKSARFL 219 (287)
T ss_dssp EE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEEEE-SSHHHHHHHHHHHHHTTHTSEEEEEEE-------HCCHHHHHHH
T ss_pred ccCCCCCccccCHHHHHHHHHHHHHCCCCEEeccccCCHHHHHHHHHHHHHcCCCCcEEEEEe------ccCCHHHHHHH
Confidence 21111 1234578889999999999999998877777777777765421 246655444 33355554444
No 375
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=87.34 E-value=28 Score=34.16 Aligned_cols=149 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHH
Q 010948 135 YGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (497)
Q Consensus 135 ldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAA 214 (497)
+.+....+..+++..++|+++. ..++...+.|++||||.- +---.
T Consensus 48 ~~~la~~l~~~~~~~~~~liIn------------d~~~lA~~~~adGVHlg~-----------------------~d~~~ 92 (211)
T PRK03512 48 VEADVVAAIALGRRYQARLFIN------------DYWRLAIKHQAYGVHLGQ-----------------------EDLET 92 (211)
T ss_pred HHHHHHHHHHHHHHhCCeEEEe------------CHHHHHHHcCCCEEEcCh-----------------------HhCCH
Q ss_pred HHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC------------CCHHHHHHHHHhCCCCCccc
Q 010948 215 VDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL------------ASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 215 v~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~------------~s~eei~~i~~~v~~vP~~~ 282 (497)
.+++..++.+.+|-.-+-. ++.++...+.|||.+++-.+ ...+.++++++....+|
T Consensus 93 ~~~r~~~~~~~~iG~S~H~---------~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~P--- 160 (211)
T PRK03512 93 ADLNAIRAAGLRLGVSTHD---------DMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYP--- 160 (211)
T ss_pred HHHHHhcCCCCEEEEeCCC---------HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCC---
Q ss_pred eeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH--HHHHHHHHHHHHHcCC
Q 010948 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV--SVRAMQDALTAIKGGR 332 (497)
Q Consensus 283 N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~a--a~~Am~~al~~i~~g~ 332 (497)
++.-||-++ -++.++.+.|+.-|-.-..++.+ -..+++..+..+..|.
T Consensus 161 -V~AiGGI~~-~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~~~~ 210 (211)
T PRK03512 161 -TVAIGGISL-ERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAEVGD 210 (211)
T ss_pred -EEEECCCCH-HHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHhhcc
No 376
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=87.27 E-value=18 Score=38.36 Aligned_cols=135 Identities=21% Similarity=0.155 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhCccEEEecCCC--------CC---CCCCCCCCccccCH----HHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSR----EEAVMRIKAAVDARKESGSDIVIVAR 230 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~--------~p---KrCGH~~gk~lvp~----ee~~~KIrAAv~Ar~~~g~dfvIiAR 230 (497)
...+++++.++||.+||.|-..- +| +|--.-+| .+-.+ -|.++.||++ .|+++ |.-|
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGG-slENR~Rf~~Eiv~aVr~~------vg~~~-igvR 231 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGG-SVENRARLVLEVVDAGIAE------WGADR-IGIR 231 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCC-cHHHHHHHHHHHHHHHHHH------cCCCe-EEEE
Confidence 34456788889999999985432 12 22211122 11111 1233333322 35565 6667
Q ss_pred ccch-------hcccHHH-HHHHHHHHHhcCCCEEEeccCC-------CHHHHHHHHHhCCCCCccceeeecCCCCCCCC
Q 010948 231 TDSR-------QALSLEE-SLRRSRAFADAGADVLFIDALA-------SKEEMKAFCEISPLVPKMANMLEGGGKTPILN 295 (497)
Q Consensus 231 TDA~-------~~~~lde-aIeRAkAY~eAGAD~IfIeg~~-------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt 295 (497)
--.. ....++| +++-++.++++|.|.|=+-+.. ..+..+++.+.++ +|++ ..++.+|..
T Consensus 232 is~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~-~pv~----~~G~~~~~~- 305 (362)
T PRK10605 232 ISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFH-GVII----GAGAYTAEK- 305 (362)
T ss_pred ECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCC-CCEE----EeCCCCHHH-
Confidence 5331 1245788 8999999999999998664321 2223345555554 3533 222333322
Q ss_pred HHHHHhcC-CCEEeccchHH
Q 010948 296 PLELEELG-FKLVAYPLSLI 314 (497)
Q Consensus 296 ~~eL~elG-v~~Vsyp~~ll 314 (497)
.+++-+-| +.+|.++=.++
T Consensus 306 ae~~i~~G~~D~V~~gR~~i 325 (362)
T PRK10605 306 AETLIGKGLIDAVAFGRDYI 325 (362)
T ss_pred HHHHHHcCCCCEEEECHHhh
Confidence 23333334 77777765443
No 377
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.22 E-value=3 Score=42.91 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=51.1
Q ss_pred CCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCC-CCCccceeeecCCCCCCCCHHHHHh
Q 010948 223 SDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEE 301 (497)
Q Consensus 223 ~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~lt~~eL~e 301 (497)
++..|..-++. ++.++...++|||.|.++. .+.++++++++..+ .+|+ ...||-+ .-++.++.+
T Consensus 188 ~~~~I~VEv~t---------leea~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~~~i~l----eAsGGIt-~~ni~~~a~ 252 (277)
T PRK05742 188 PGKPVEVEVES---------LDELRQALAAGADIVMLDE-LSLDDMREAVRLTAGRAKL----EASGGIN-ESTLRVIAE 252 (277)
T ss_pred CCCeEEEEeCC---------HHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhCCCCcE----EEECCCC-HHHHHHHHH
Confidence 55666666655 3445556689999999965 46789999988663 2332 2223432 235689999
Q ss_pred cCCCEEeccch
Q 010948 302 LGFKLVAYPLS 312 (497)
Q Consensus 302 lGv~~Vsyp~~ 312 (497)
.|+..++.+..
T Consensus 253 tGvD~Isvg~l 263 (277)
T PRK05742 253 TGVDYISIGAM 263 (277)
T ss_pred cCCCEEEEChh
Confidence 99999998764
No 378
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=87.21 E-value=5.9 Score=41.05 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=70.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccH
Q 010948 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (497)
Q Consensus 160 GYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~l 239 (497)
|.|++..+.+.++++ .|...+|+-= |. -+.++-+++|++++++. +++. =|-|+......
T Consensus 112 ~~~~~~~~~~~a~~~--~Gf~~~KvKv-------G~------~~~~~d~~~i~~vr~~~----~~~~--l~vDaN~~w~~ 170 (322)
T PRK05105 112 CYGDPDELILKLADM--PGEKVAKVKV-------GL------YEAVRDGMLVNLLLEAI----PDLK--LRLDANRGWTL 170 (322)
T ss_pred ecCCHHHHHHHHHHc--CCCCEEEEEE-------CC------CCHHHHHHHHHHHHHhC----CCCe--EEEECCCCCCH
Confidence 456776666666665 6888888732 21 13456678888887663 3433 37899888889
Q ss_pred HHHHHHHHHHHh-cCCCEEEeccC-CCHHHHHHHHHhCCCCCcc
Q 010948 240 EESLRRSRAFAD-AGADVLFIDAL-ASKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 240 deaIeRAkAY~e-AGAD~IfIeg~-~s~eei~~i~~~v~~vP~~ 281 (497)
++|++.++++.+ .|.+..|+|-+ ++.++++++.+..+ +|..
T Consensus 171 ~~A~~~~~~l~~~~~~~i~~iEqP~~~~~~~~~l~~~~~-~PIa 213 (322)
T PRK05105 171 EKAQQFAKYVPPDYRHRIAFLEEPCKTPDDSRAFARATG-IAIA 213 (322)
T ss_pred HHHHHHHHHhhhhcCCCccEEECCCCCHHHHHHHHHhCC-CCEE
Confidence 999999999987 45677788865 45678888888765 5654
No 379
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=87.15 E-value=5 Score=38.75 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=58.1
Q ss_pred HHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCC
Q 010948 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (497)
Q Consensus 81 Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtG 160 (497)
+.+.+++.+..+++.+++..-++.+++.|.+.+++.+... -|........ .+..++++.+.+++||++.. |
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~----~G~~~~~~~~---~~~~i~~i~~~~~~Pvi~~G--G 164 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEA----GGHRGTFDIG---TFALVPEVRDAVDIPVIAAG--G 164 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCC----CCCCCccccC---HHHHHHHHHHHhCCCEEEEC--C
Confidence 3333333445567788888888888889999998865421 1222111112 24455566666789999853 4
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEecCCC
Q 010948 161 YGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AGaAGI~IEDq~ 188 (497)
...+.++ +++.++|++||.+-...
T Consensus 165 I~~~~~v----~~~l~~GadgV~vgS~l 188 (236)
T cd04730 165 IADGRGI----AAALALGADGVQMGTRF 188 (236)
T ss_pred CCCHHHH----HHHHHcCCcEEEEchhh
Confidence 4444444 45556899999995544
No 380
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.08 E-value=0.87 Score=47.83 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCC--CEEEecc-----CCCHHHHHHHHHhCCCCCccc-eeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 010948 240 EESLRRSRAFADAGA--DVLFIDA-----LASKEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYPL 311 (497)
Q Consensus 240 deaIeRAkAY~eAGA--D~IfIeg-----~~s~eei~~i~~~v~~vP~~~-N~l~~~g~tP~lt~~eL~elGv~~Vsyp~ 311 (497)
++..+|+.+..+||+ |+|.++. ..-.+.++++.+.+|.+|+++ |+. + .-....|.++|+..+.++.
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-----t-~e~a~~l~~aGad~i~vg~ 169 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-----T-PEAVRELENAGADATKVGI 169 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-----C-HHHHHHHHHcCcCEEEECC
Confidence 466799999999965 9999943 333456778878887667665 432 1 1256899999999988664
Q ss_pred h
Q 010948 312 S 312 (497)
Q Consensus 312 ~ 312 (497)
+
T Consensus 170 ~ 170 (326)
T PRK05458 170 G 170 (326)
T ss_pred C
Confidence 4
No 381
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=87.06 E-value=52 Score=36.15 Aligned_cols=272 Identities=17% Similarity=0.197 Sum_probs=148.0
Q ss_pred HHHHHHHhCCCceeecccC----ChHHH--HHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCc
Q 010948 79 KSLRQILELPGVHQGPACF----DALSA--KLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSI 151 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ay----DalSA--riae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~i 151 (497)
+.+-+.++.|+..-++++= ..+-| +.+.+.|++.++-+ +=.+- -.=|| + .+|-.++.+.+..|+...+.
T Consensus 5 ~~~~~~~k~g~~~gI~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVn-q~GGY--T-GmtP~dF~~~V~~iA~~~gf 80 (426)
T PRK15458 5 TEMVQQHKAGKTNGIYAVCSAHPLVLEAAIRYALANDSPLLIEATSNQVD-QFGGY--T-GMTPADFRGFVCQLADSLNF 80 (426)
T ss_pred HHHHHhhccCCCceEEEecCCCHHHHHHHHHHHhhcCCcEEEEecccccc-ccCCc--C-CCCHHHHHHHHHHHHHHcCC
Confidence 3455556666554333221 22333 33344588888887 43432 22266 3 37888999999999999886
Q ss_pred c---eEeeCCCC----CCC--HH----HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCcc-ccCHHHHHHHHH----H
Q 010948 152 P---VIGDGDNG----YGN--AM----NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK-VVSREEAVMRIK----A 213 (497)
Q Consensus 152 P---VIaD~DtG----YG~--~~----~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~-lvp~ee~~~KIr----A 213 (497)
| +|.=.|++ +-+ +. ++.+.++.+++||..=|||.-.. .|- |.+ -++.+..++|-. .
T Consensus 81 ~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm---~ca---gdp~pL~d~~vA~Raa~L~~~ 154 (426)
T PRK15458 81 PQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFKKIHLDCSM---SCA---DDPIPLTDEIVAERAARLAKI 154 (426)
T ss_pred ChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCC---CCC---CCCCCCChHHHHHHHHHHHHH
Confidence 6 68889986 221 12 45566778889999999995443 253 332 223355554433 1
Q ss_pred HHHHH-HhcC-C-CeEEEEeccc---------------hhcccHHHHHHHH-HHHHhcCCCE-----E--Ee-ccC----
Q 010948 214 AVDAR-KESG-S-DIVIVARTDS---------------RQALSLEESLRRS-RAFADAGADV-----L--FI-DAL---- 262 (497)
Q Consensus 214 Av~Ar-~~~g-~-dfvIiARTDA---------------~~~~~ldeaIeRA-kAY~eAGAD~-----I--fI-eg~---- 262 (497)
|-+++ +..| + ...||+ |+. ...+..+.+|+.- ++|.++|-.. | ++ +|+
T Consensus 155 aE~~a~~~~~~~~~vYvIG-TEvP~pGGa~~~~~~~~vTs~e~~~~Ti~~h~~af~~~GL~~aw~rvi~~VVQpGVef~~ 233 (426)
T PRK15458 155 AEETCREHFGESDLVYVIG-TEVPVPGGAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIGLVVQPGVEFDH 233 (426)
T ss_pred HHHHHHHhcCCCCCeEEec-cccCCCCchhhhccccCCCCHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeecC
Confidence 22233 2212 2 233442 222 1123467788887 8899999654 2 22 444
Q ss_pred -----CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCH---HHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCCCC
Q 010948 263 -----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIP 334 (497)
Q Consensus 263 -----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~---~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~~g~~~ 334 (497)
-+.+..+.+++.+...|.+ +.|. -.|...+. .+|-+.||.+.-.|+.+..+...|+-. |..|.+.-.+
T Consensus 234 ~~V~~y~~~~A~~Ls~~~~~~~~l--vfEa-HSTDYQt~~al~~lv~dgfaiLKVGPaLTfalReAlfa-L~~ie~el~~ 309 (426)
T PRK15458 234 TNVIDYQPEKASALSQMVENYETL--VFEA-HSTDYQTPQALRQLVIDHFAILKVGPALTFALREALFS-LAAIEEELVP 309 (426)
T ss_pred cCccccCHHHHHHHHHHHHhCCCc--eeec-CCccCCCHHHHHHHHhcCceeeeechhHhHHHHHHHHH-HHHHHHHhcC
Confidence 1345555555444333433 3443 33555555 555667999999999887776655543 1223221111
Q ss_pred CCCCCCCHHHHHHhcCcccHHHHHHhhccccc
Q 010948 335 SPGSMPSFQEIKETLGFNTYYEEEKRYATSMR 366 (497)
Q Consensus 335 ~~~~~~~~~ei~~lvg~~~~~~~e~ry~~~~~ 366 (497)
....-.+.+..+-+=+++=..+++-|..+..
T Consensus 310 -~~~~s~l~~~le~~ml~~p~~W~k~Y~g~~~ 340 (426)
T PRK15458 310 -AKACSGLRQVLEDVMLDRPEYWQSHYHGDGN 340 (426)
T ss_pred -ccccchHHHHHHHHHHhChhhhhhhcCCCHH
Confidence 2222345555554444444445555655553
No 382
>PRK13753 dihydropteroate synthase; Provisional
Probab=87.03 E-value=14 Score=38.32 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHH
Q 010948 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE 240 (497)
Q Consensus 161 YG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ld 240 (497)
|-++..+.+.++.|++.||+-|=|=.+.. ..|...+|.+|-++||.-++++..+.+ ..| -.|.+..
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIIDIGgeST------rPga~~vs~eeE~~Rv~pvI~~l~~~~--~~I--SIDT~~~---- 86 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVDVGPAAS------HPDARPVSPADEIRRIAPLLDALSDQM--HRV--SIDSFQP---- 86 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCC------CCCCCcCCHHHHHHHHHHHHHHHHhCC--CcE--EEECCCH----
Confidence 34567888888999999999999966542 234456788888888888887766432 222 3466543
Q ss_pred HHHHHHHHHHhcCCCEEE-eccCCCHHHHHHHHHhCCCCCccce
Q 010948 241 ESLRRSRAFADAGADVLF-IDALASKEEMKAFCEISPLVPKMAN 283 (497)
Q Consensus 241 eaIeRAkAY~eAGAD~If-Ieg~~s~eei~~i~~~v~~vP~~~N 283 (497)
+-+++..++|||+|- |.+..+ .++..+++... +|..+.
T Consensus 87 ---~va~~al~aGadiINDVsg~~d-~~~~~vva~~~-~~vVlm 125 (279)
T PRK13753 87 ---ETQRYALKRGVGYLNDIQGFPD-PALYPDIAEAD-CRLVVM 125 (279)
T ss_pred ---HHHHHHHHcCCCEEEeCCCCCc-hHHHHHHHHcC-CCEEEE
Confidence 224445579999886 466654 46666665543 455443
No 383
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=87.00 E-value=1.7 Score=44.02 Aligned_cols=117 Identities=19% Similarity=0.275 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhhcCcceEeeCCCCCCCH--------HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHH
Q 010948 137 EMVDQGQLITQAVSIPVIGDGDNGYGNA--------MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (497)
Q Consensus 137 Eml~~~r~I~ra~~iPVIaD~DtGYG~~--------~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~ 208 (497)
+.+..--.+++..++++.- |+. ..+.+-++...+.|..+|-|-|+.. -+|.++-.
T Consensus 54 ~~l~eki~l~~~~gV~v~~------GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti-----------~l~~~~r~ 116 (244)
T PF02679_consen 54 EILKEKIDLAHSHGVYVYP------GGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTI-----------DLPEEERL 116 (244)
T ss_dssp HHHHHHHHHHHCTT-EEEE-------HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS--------------HHHHH
T ss_pred HHHHHHHHHHHHcCCeEeC------CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCce-----------eCCHHHHH
Confidence 4444444566667787743 322 1344456667789999999999752 24555444
Q ss_pred HHHHHHHHHHHhcCCCeEEEE---eccchh--cccHHHHHHHHHHHHhcCCCEEEeccCC-------------CHHHHHH
Q 010948 209 MRIKAAVDARKESGSDIVIVA---RTDSRQ--ALSLEESLRRSRAFADAGADVLFIDALA-------------SKEEMKA 270 (497)
Q Consensus 209 ~KIrAAv~Ar~~~g~dfvIiA---RTDA~~--~~~ldeaIeRAkAY~eAGAD~IfIeg~~-------------s~eei~~ 270 (497)
.-| +.+++ .+|.+.. +.|... ..+.++.|+++++..+||||.|.+|+-. ..+.+.+
T Consensus 117 ~~I---~~~~~---~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~ 190 (244)
T PF02679_consen 117 RLI---RKAKE---EGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEK 190 (244)
T ss_dssp HHH---HHHCC---TTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHH
T ss_pred HHH---HHHHH---CCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHH
Confidence 444 44432 3577664 344332 2336789999999999999999999761 2577888
Q ss_pred HHHhCC
Q 010948 271 FCEISP 276 (497)
Q Consensus 271 i~~~v~ 276 (497)
|.+.++
T Consensus 191 i~~~~~ 196 (244)
T PF02679_consen 191 IIERLG 196 (244)
T ss_dssp HHTTS-
T ss_pred HHHhCC
Confidence 887765
No 384
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=86.93 E-value=3.5 Score=43.38 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=52.9
Q ss_pred Cceeec-ccCChHHHHHHHHhCCcEEEecchhhhh--h----hcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCC
Q 010948 89 GVHQGP-ACFDALSAKLVEKSGFSFCFTSGFSISA--A----RLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGY 161 (497)
Q Consensus 89 ~~iv~p-~ayDalSAriae~aGfdAI~vSG~avSa--s----~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGY 161 (497)
+..++. ++=+.-.|+.+.++|+|++.++..+-+. + ..|.||- .+..++.+++..++|||+| .|.
T Consensus 140 ~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w-------~l~ai~~~~~~~~ipVIAd--GGI 210 (326)
T PRK05458 140 ETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-------QLAALRWCAKAARKPIIAD--GGI 210 (326)
T ss_pred CCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCcc-------HHHHHHHHHHHcCCCEEEe--CCC
Confidence 345555 5889999999999999999988222111 1 1133332 2333445555567999987 233
Q ss_pred CCHHHHHHHHHHHHHhCccEEEecC
Q 010948 162 GNAMNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 162 G~~~~V~rtVk~l~~AGaAGI~IED 186 (497)
-++.++. |. ..+||++|.+=.
T Consensus 211 ~~~~Di~---Ka-La~GA~aV~vG~ 231 (326)
T PRK05458 211 RTHGDIA---KS-IRFGATMVMIGS 231 (326)
T ss_pred CCHHHHH---HH-HHhCCCEEEech
Confidence 3444444 33 356999998843
No 385
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=86.90 E-value=53 Score=36.05 Aligned_cols=204 Identities=18% Similarity=0.182 Sum_probs=124.8
Q ss_pred HHHhCCcEEEecc-hhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcc---eEeeCCCC----CCC--HH----HHHHH
Q 010948 105 VEKSGFSFCFTSG-FSISAARLALPDTGFISYGEMVDQGQLITQAVSIP---VIGDGDNG----YGN--AM----NVKRT 170 (497)
Q Consensus 105 ae~aGfdAI~vSG-~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iP---VIaD~DtG----YG~--~~----~V~rt 170 (497)
+.+.+++.++-++ -++- ..=|| + .+|-.++.+.+..|+...+.| +|.=.|++ +-+ .. ++.+.
T Consensus 34 a~~~~~pvLiEAT~NQVd-q~GGY--T-GmtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~l 109 (421)
T PRK15052 34 DLNSTRKVLIEATSNQVN-QFGGY--T-GMTPADFREFVYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVEL 109 (421)
T ss_pred HhhcCCcEEEEecccccc-ccCCc--C-CCCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHH
Confidence 3445888888874 3432 22266 3 378889999999999988766 68889996 221 22 45566
Q ss_pred HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHH----HHHHhcC-C-CeEEEEeccc-----------
Q 010948 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV----DARKESG-S-DIVIVARTDS----------- 233 (497)
Q Consensus 171 Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv----~Ar~~~g-~-dfvIiARTDA----------- 233 (497)
++.+++||..=|||.-.. .|-- ....+|.+..++|-.... +++.+.| + ...||+ |+.
T Consensus 110 i~ayV~AGF~kIHLD~Sm---~ca~--d~~~L~d~~vA~Raa~L~~~aE~~~~~~~~~~~vYvIG-TEvP~pGGa~~~~~ 183 (421)
T PRK15052 110 VKAYVRAGFSKIHLDASM---SCAD--DPIPLAPETVAERAAVLCQAAESVATDCQREQLSYVIG-TEVPVPGGEASAIQ 183 (421)
T ss_pred HHHHHHcCCceEEecCCC---CccC--CCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEec-cccCCCCcchhhcc
Confidence 777889999999995443 3532 224566666666644222 2333223 2 234442 222
Q ss_pred -h---hcccHHHHHHHH-HHHHhcCCCE-----EE--e-ccC---------CCHHHHHHHHHhCCCCCccceeeecCCCC
Q 010948 234 -R---QALSLEESLRRS-RAFADAGADV-----LF--I-DAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKT 291 (497)
Q Consensus 234 -~---~~~~ldeaIeRA-kAY~eAGAD~-----If--I-eg~---------~s~eei~~i~~~v~~vP~~~N~l~~~g~t 291 (497)
. ..+.++.+|+.- ++|.++|-.. |+ + +|+ -+.+.++.+++.+.. |.+ +++. -.|
T Consensus 184 ~~~vT~~e~~~~ti~~h~~af~~~GL~~aw~rvi~vVVQpGvef~~~~V~~y~~~~A~~Ls~~~~~-~~l--vfEa-HST 259 (421)
T PRK15052 184 SVHVTRVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALSAWIEN-TPM--VYEA-HST 259 (421)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeeCCCCeeecCHHHHHHHHHHhcC-CCE--EEee-cCc
Confidence 0 123467788887 8899999654 22 2 444 135666677666554 333 3443 345
Q ss_pred CCCCH---HHHHhcCCCEEeccchHHHHHHHHHH
Q 010948 292 PILNP---LELEELGFKLVAYPLSLIGVSVRAMQ 322 (497)
Q Consensus 292 P~lt~---~eL~elGv~~Vsyp~~ll~aa~~Am~ 322 (497)
...+. .+|-+.||...-.|+.+-.+...|+-
T Consensus 260 DYQt~~al~~lv~dgfaiLKVGPalTfalreAlf 293 (421)
T PRK15052 260 DYQTRQAYRELVRDHFAILKVGPALTFALREAIF 293 (421)
T ss_pred ccCCHHHHHHHHhcCceeeeechhHhHHHHHHHH
Confidence 56665 45566699999999988776555553
No 386
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=86.87 E-value=41 Score=36.36 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCCEEEecc---------CCCHHHHHHHHHhCCC-CCccceeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 010948 244 RRSRAFADAGADVLFIDA---------LASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIeg---------~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~l 313 (497)
+.|+...++|||+|.+.+ +++.+.+.++.+.+.. +|+ +..+|-.-..++-..-.+|.+.|..+-..
T Consensus 265 ~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~v----i~dGGIr~G~Dv~KALaLGA~~v~iGr~~ 340 (383)
T cd03332 265 DDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTV----LFDSGVRTGADIMKALALGAKAVLIGRPY 340 (383)
T ss_pred HHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeE----EEeCCcCcHHHHHHHHHcCCCEEEEcHHH
Confidence 567788899999999853 3456777777776642 443 33345433456666678899999998887
Q ss_pred HHHH----HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHH
Q 010948 314 IGVS----VRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEE 358 (497)
Q Consensus 314 l~aa----~~Am~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e 358 (497)
+.+. ..++.+.++.++.. ++....++|.....++.
T Consensus 341 l~~l~~~G~~gv~~~l~~l~~E----------l~~~m~l~G~~~i~~l~ 379 (383)
T cd03332 341 AYGLALGGEDGVEHVLRNLLAE----------LDLTMGLAGIRSIAELT 379 (383)
T ss_pred HHHHHhccHHHHHHHHHHHHHH----------HHHHHHHHCCCCHHHhC
Confidence 7553 33455555555432 33444455555555443
No 387
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=86.81 E-value=7 Score=37.79 Aligned_cols=122 Identities=20% Similarity=0.190 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHH
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeR 245 (497)
+....++.|.+.|++.++|=|-... .++|.. ..+++.+| ++.. +.++.+.+..-. .++
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~------~~~~i~~i---~~~~---~~pv~~~GgI~~---------~e~ 87 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGA-KGGEPV------NLELIEEI---VKAV---GIPVQVGGGIRS---------LED 87 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcc-ccCCCC------CHHHHHHH---HHhc---CCCEEEeCCcCC---------HHH
Confidence 4566778888999999999875421 112211 12334443 3332 245666555333 467
Q ss_pred HHHHHhcCCCEEEecc--CCCHHHHHHHHHhCCCCCc--cceee-----ecCC--CCCCCC----HHHHHhcCCCEEecc
Q 010948 246 SRAFADAGADVLFIDA--LASKEEMKAFCEISPLVPK--MANML-----EGGG--KTPILN----PLELEELGFKLVAYP 310 (497)
Q Consensus 246 AkAY~eAGAD~IfIeg--~~s~eei~~i~~~v~~vP~--~~N~l-----~~~g--~tP~lt----~~eL~elGv~~Vsyp 310 (497)
++.+.++|||.|++.. +.+++.++++.+.++.-+. .+++- ..++ .++ .+ .+++.+.|+..+++.
T Consensus 88 ~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 88 IERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSE-VSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred HHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecC-CCHHHHHHHHHHcCCCEEEEE
Confidence 8888889999998854 4577788888888753122 12211 1011 011 12 466888899999885
No 388
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=86.78 E-value=0.72 Score=50.21 Aligned_cols=90 Identities=26% Similarity=0.330 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeccC-CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHH--------------HHhcC
Q 010948 239 LEESLRRSRAFADAGADVLFIDAL-ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE--------------LEELG 303 (497)
Q Consensus 239 ldeaIeRAkAY~eAGAD~IfIeg~-~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~e--------------L~elG 303 (497)
..+.|+|+.+|+-- +|+++.+.- ++.+++++|.+.+.. -.|-+|++. +.+|.++... |+++|
T Consensus 336 ~q~~I~rai~fApy-~d~~w~et~~pd~~eakeFsegv~~-~~pd~m~ay-~~sPsfn~~~a~~~~~Q~~~f~~~l~~~G 412 (492)
T KOG1260|consen 336 IQEEIGRAIAFAPY-ADLIWMETSYPDRQEAKEFSEGVKK-QYPDSMLAY-NFSPSFNWKKAGFSDEQLVAFDDDLGKMG 412 (492)
T ss_pred HHHHHHHHHccCch-hhhhhhhcCCCCHHHHHHHHHHhhh-cChhhHhhh-cCCCCCCcccccCCHHHHHhhhhhHhhcC
Confidence 78999999998777 999999976 588999999988764 346778876 6788776554 99999
Q ss_pred CCEEeccchHHHHHHHHHHHHHHHHHcC
Q 010948 304 FKLVAYPLSLIGVSVRAMQDALTAIKGG 331 (497)
Q Consensus 304 v~~Vsyp~~ll~aa~~Am~~al~~i~~g 331 (497)
|.....++..+.+-..++-+...-.++.
T Consensus 413 ~~~q~itla~~~~~~~a~~d~~~~~k~d 440 (492)
T KOG1260|consen 413 FILQVITLAGLHANRNAFVDLSNIFKKD 440 (492)
T ss_pred eEEEEeehhHhcccchhHHHHHHHHHhc
Confidence 9999999999999999999998888753
No 389
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=86.69 E-value=17 Score=39.13 Aligned_cols=216 Identities=13% Similarity=0.134 Sum_probs=111.4
Q ss_pred ecccCCh----HHHHHHHHhCCcEEEec-chhhhhhhcccCCCC---CCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCH
Q 010948 93 GPACFDA----LSAKLVEKSGFSFCFTS-GFSISAARLALPDTG---FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA 164 (497)
Q Consensus 93 ~p~ayDa----lSAriae~aGfdAI~vS-G~avSas~lG~PD~g---~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~ 164 (497)
+.|+++. --|+.++++|+|++=+- |.-.. .+..+.+ .-..+.+-+.++.+...+.+||++=+-- +.
T Consensus 120 i~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~---~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP---n~ 193 (385)
T PLN02495 120 IMEEYNKDAWEEIIERVEETGVDALEINFSCPHG---MPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP---NI 193 (385)
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC---CCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC---Ch
Confidence 4455663 34667788999988765 32211 1122221 1223333344466666678999998763 23
Q ss_pred HHHHHHHHHHHHhCccEEEecCCCCC-----------C-------CCCCCCCccccCHHHHHHHHHHHHHHHH-hcCCCe
Q 010948 165 MNVKRTVKGYIKAGFAGIILEDQVSP-----------K-------GCGHTRGRKVVSREEAVMRIKAAVDARK-ESGSDI 225 (497)
Q Consensus 165 ~~V~rtVk~l~~AGaAGI~IEDq~~p-----------K-------rCGH~~gk~lvp~ee~~~KIrAAv~Ar~-~~g~df 225 (497)
.++...++.+.++||+||.+=..... . ..|-..|+.+-|.. +..++.+..+.. ....++
T Consensus 194 t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiA--l~~v~~i~~~~~~~~~~~i 271 (385)
T PLN02495 194 TDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIA--LAKVMAIAKMMKSEFPEDR 271 (385)
T ss_pred hhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHH--HHHHHHHHHHHhhhccCCC
Confidence 35777788888999999988664421 0 11223355565653 223333332221 111234
Q ss_pred EEEEeccchhcccHHHHHHHHHHHHhcCCCEEEecc-C--CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhc
Q 010948 226 VIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA-L--ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL 302 (497)
Q Consensus 226 vIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg-~--~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~el 302 (497)
-|++=.-- ..- +.|..|..|||++|-+=. + .-.+.++++.+.+. +.++..| .-+++|+.-.
T Consensus 272 pIiGvGGI---~s~----~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~------~~m~~~G---~~si~e~~G~ 335 (385)
T PLN02495 272 SLSGIGGV---ETG----GDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQ------DFMKKHN---FSSIEDFRGA 335 (385)
T ss_pred cEEEECCC---CCH----HHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHH------HHHHHcC---CCCHHHHhCc
Confidence 55554322 222 345557779999886522 1 22456677766542 1222212 1267777766
Q ss_pred CCCEEeccchHHHHHHHHHHHHHHHHHcCCC
Q 010948 303 GFKLVAYPLSLIGVSVRAMQDALTAIKGGRI 333 (497)
Q Consensus 303 Gv~~Vsyp~~ll~aa~~Am~~al~~i~~g~~ 333 (497)
..+.+.--..|-.....++.+- ..|+.|+.
T Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 365 (385)
T PLN02495 336 SLPYFTTHTDLVQRQKEAIRQR-KAIRKGLA 365 (385)
T ss_pred CCcccCcHHHhhHHHHHhhCHH-HHhhhccc
Confidence 6666553333333333333332 34566643
No 390
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=86.60 E-value=9.1 Score=42.36 Aligned_cols=116 Identities=21% Similarity=0.213 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHH
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeR 245 (497)
...+.++.+.++|++-|+| |-. -||.. ...+.|+.+++. -++..|+|-+-.. .+.
T Consensus 241 ~~~~~~~~l~~ag~d~i~i-d~a----~G~s~--------~~~~~i~~ik~~----~~~~~v~aG~V~t--------~~~ 295 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVV-DSS----QGNSI--------YQIDMIKKLKSN----YPHVDIIAGNVVT--------ADQ 295 (495)
T ss_pred HHHHHHHHHHHCCCCEEEE-ecC----CCCch--------HHHHHHHHHHhh----CCCceEEECCcCC--------HHH
Confidence 4467788999999999999 432 24532 123445544443 2577788743332 366
Q ss_pred HHHHHhcCCCEEEec---c------------CCCH---HHHHHHHHhCCCCCccceeeecCC-CCCCCCHHHHHhcCCCE
Q 010948 246 SRAFADAGADVLFID---A------------LASK---EEMKAFCEISPLVPKMANMLEGGG-KTPILNPLELEELGFKL 306 (497)
Q Consensus 246 AkAY~eAGAD~IfIe---g------------~~s~---eei~~i~~~v~~vP~~~N~l~~~g-~tP~lt~~eL~elGv~~ 306 (497)
++.+.+||||+|.+- | .+.. .++.++++... +|. +..|| ++| -.+...-++|...
T Consensus 296 a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~-v~v----IadGGi~~~-~di~kAla~GA~~ 369 (495)
T PTZ00314 296 AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERG-VPC----IADGGIKNS-GDICKALALGADC 369 (495)
T ss_pred HHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcC-CeE----EecCCCCCH-HHHHHHHHcCCCE
Confidence 788889999999762 1 2222 23444444443 443 33334 222 2233344578888
Q ss_pred Eeccch
Q 010948 307 VAYPLS 312 (497)
Q Consensus 307 Vsyp~~ 312 (497)
|..|..
T Consensus 370 Vm~G~~ 375 (495)
T PTZ00314 370 VMLGSL 375 (495)
T ss_pred EEECch
Confidence 877764
No 391
>PRK00915 2-isopropylmalate synthase; Validated
Probab=86.57 E-value=12 Score=41.52 Aligned_cols=151 Identities=23% Similarity=0.204 Sum_probs=92.3
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
|+.+.++|++.|=++.-+.+ |+ .+ +.+++|.... +..+.+=.. .....+.++.+.+.++|+.
T Consensus 32 a~~L~~~Gv~~IE~G~p~~s------~~----d~----~~v~~i~~~~~~~~i~a~~r---~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 32 AKQLERLGVDVIEAGFPASS------PG----DF----EAVKRIARTVKNSTVCGLAR---AVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred HHHHHHcCCCEEEEcCCCCC------hH----HH----HHHHHHHhhCCCCEEEEEcc---CCHHHHHHHHHHhhcCCCC
Confidence 45677889999887632211 11 12 2335554332 233333111 1345677777777789999
Q ss_pred EEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 181 GI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
.|++-...++- |...+-=.+.++.++++..+++-.++.|..+.+.+ -|+. ..+.+.+++-+++..++|||.|.+.
T Consensus 95 ~v~i~~~~Sd~---h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~-ed~~-r~d~~~l~~~~~~~~~~Ga~~i~l~ 169 (513)
T PRK00915 95 RIHTFIATSPI---HMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSA-EDAT-RTDLDFLCRVVEAAIDAGATTINIP 169 (513)
T ss_pred EEEEEECCcHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe-CCCC-CCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 99998776533 21111113578889888877776666564443333 2332 2356888999999999999999886
Q ss_pred ---cCCCHHHHHHHHHh
Q 010948 261 ---ALASKEEMKAFCEI 274 (497)
Q Consensus 261 ---g~~s~eei~~i~~~ 274 (497)
|..+++++.++.+.
T Consensus 170 DTvG~~~P~~~~~~i~~ 186 (513)
T PRK00915 170 DTVGYTTPEEFGELIKT 186 (513)
T ss_pred cCCCCCCHHHHHHHHHH
Confidence 34566777666654
No 392
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.56 E-value=14 Score=37.61 Aligned_cols=110 Identities=18% Similarity=0.141 Sum_probs=61.6
Q ss_pred eEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCcccc-----------CHHHHHHHHHHHHHHHHhc
Q 010948 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVV-----------SREEAVMRIKAAVDARKES 221 (497)
Q Consensus 153 VIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lv-----------p~ee~~~KIrAAv~Ar~~~ 221 (497)
+|.=+-.||-+.+...+.++.+.++||+.|-| +.. =.-.-.+|..+. ..+...+-++..+ .+.
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iEl--GiP-fSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r---~~~ 90 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIEL--GIP-YSDPLADGPIIQEASNRALKQGINLNKILSILSEVN---GEI 90 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE--CCC-CCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh---cCC
Confidence 44445567777788888899999999998865 331 000011222111 1222233333322 222
Q ss_pred CCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHH
Q 010948 222 GSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFC 272 (497)
Q Consensus 222 g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~ 272 (497)
..++++..=-.-.-..|+|.-+++| .++|+|.|.++-++- +|..++.
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~---~~aGvdgviipDLP~-ee~~~~~ 137 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKI---SQAGVKGLIIPDLPY-EESDYLI 137 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHH---HHcCCeEEEecCCCH-HHHHHHH
Confidence 3355555443333356777776665 689999999999875 4444443
No 393
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=86.51 E-value=9.8 Score=39.77 Aligned_cols=88 Identities=20% Similarity=0.138 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCcEEEec-chhhhhhh-cccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCC---CHHHHHHHHHHH
Q 010948 100 LSAKLVEKSGFSFCFTS-GFSISAAR-LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG---NAMNVKRTVKGY 174 (497)
Q Consensus 100 lSAriae~aGfdAI~vS-G~avSas~-lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG---~~~~V~rtVk~l 174 (497)
-.|++++++|||+|=+= |.-..... -|+=....-..+-+.+.++.+.+++++||.+=+--|+- ...+..+.++.+
T Consensus 81 ~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l 160 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTV 160 (333)
T ss_pred HHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHH
Confidence 34677788899999655 32221110 01100111234456667777877788998874433432 234677888999
Q ss_pred HHhCccEEEecCC
Q 010948 175 IKAGFAGIILEDQ 187 (497)
Q Consensus 175 ~~AGaAGI~IEDq 187 (497)
.++|+++|.+-..
T Consensus 161 ~~aG~d~i~vh~R 173 (333)
T PRK11815 161 AEAGCDTFIVHAR 173 (333)
T ss_pred HHhCCCEEEEcCC
Confidence 9999999998743
No 394
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=86.48 E-value=17 Score=38.39 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCEEEecc---------CCCHHHHHHHHH---hCC-CCCccceeeecCCCCCCCCHHHHHhcCCCEEec
Q 010948 243 LRRSRAFADAGADVLFIDA---------LASKEEMKAFCE---ISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg---------~~s~eei~~i~~---~v~-~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsy 309 (497)
.+.|+...++|||+|.+-+ +++.+.+.++.+ .+. .+| ++..+|-.-..++-+.-.+|.+.|..
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~----vi~~GGIr~G~Dv~kalaLGA~aV~i 299 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIE----VYVDGGVRRGTDVLKALCLGAKAVGL 299 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCce----EEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4667778899999999754 233344444444 332 233 44444544445677788899999999
Q ss_pred cchHHHHHHH----HHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHH
Q 010948 310 PLSLIGVSVR----AMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEE 357 (497)
Q Consensus 310 p~~ll~aa~~----Am~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~ 357 (497)
+...+.+... ++...++.|++. ++.+..++|.....++
T Consensus 300 G~~~l~~l~~~G~~gv~~~l~~l~~E----------L~~~m~l~G~~~i~~l 341 (344)
T cd02922 300 GRPFLYALSAYGEEGVEKAIQILKDE----------IETTMRLLGVTSLDQL 341 (344)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHHHH----------HHHHHHHhCCCCHHHh
Confidence 9887776543 344444444432 3344455555554443
No 395
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=85.99 E-value=6.3 Score=37.53 Aligned_cols=67 Identities=22% Similarity=0.124 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCCEEEec-c-CCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 010948 243 LRRSRAFADAGADVLFID-A-LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIe-g-~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll 314 (497)
.+.++...++|||.|-+- . ....+-++.+.+.+|.+| ++.-||-++ -+..++.+.|+..|..+..++
T Consensus 107 ~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p----~~a~GGI~~-~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 107 PTEIMQALELGADIVKLFPAEAVGPAYIKALKGPFPQVR----FMPTGGVSL-DNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCe----EEEeCCCCH-HHHHHHHHCCCEEEEEchhcc
Confidence 344555678999998653 2 224566777666555444 334445433 467899999999998887665
No 396
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=85.86 E-value=23 Score=37.53 Aligned_cols=150 Identities=18% Similarity=0.142 Sum_probs=93.7
Q ss_pred ccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHH---HhhcCcceEee---CCCC--------
Q 010948 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLI---TQAVSIPVIGD---GDNG-------- 160 (497)
Q Consensus 95 ~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I---~ra~~iPVIaD---~DtG-------- 160 (497)
...+..|..-+.+.|.|++-+-= .+| ||...-.-++++..+++| |+..++|+++= -+.|
T Consensus 105 ~~~~~~sve~a~~~GAdAVk~lv------~~~-~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~ 177 (340)
T PRK12858 105 DLLDNWSVRRIKEAGADAVKLLL------YYR-PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEE 177 (340)
T ss_pred cccccccHHHHHHcCCCEEEEEE------EeC-CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccccc
Confidence 34455566667778888776542 233 553321124555555555 45568998873 1222
Q ss_pred CC--CHHHHHHHHHHHH--HhCccEEEecCCCCCC-CCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh
Q 010948 161 YG--NAMNVKRTVKGYI--KAGFAGIILEDQVSPK-GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (497)
Q Consensus 161 YG--~~~~V~rtVk~l~--~AGaAGI~IEDq~~pK-rCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~ 235 (497)
|. .+..|.+++|.+. +.||+=+|+|=-..+| .-|...+..+.+.++..+..+..+++. +.+++|.+---
T Consensus 178 ~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~---~~P~vvlsgG~--- 251 (340)
T PRK12858 178 FAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT---DLPFIFLSAGV--- 251 (340)
T ss_pred ccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC---CCCEEEECCCC---
Confidence 32 3578999999999 4999999998643221 123334466778888888888777764 45777765432
Q ss_pred cccHHHHHHHHHHHHhcCC--CEEEe
Q 010948 236 ALSLEESLRRSRAFADAGA--DVLFI 259 (497)
Q Consensus 236 ~~~ldeaIeRAkAY~eAGA--D~IfI 259 (497)
+.++.++..+...++|| ..+.+
T Consensus 252 --~~~~f~~~l~~A~~aGa~f~Gvl~ 275 (340)
T PRK12858 252 --SPELFRRTLEFACEAGADFSGVLC 275 (340)
T ss_pred --CHHHHHHHHHHHHHcCCCccchhh
Confidence 23556777777788999 66554
No 397
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=85.53 E-value=18 Score=36.82 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=64.3
Q ss_pred eEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCcccc-----------CHHHHHHHHHHHHHHHHhc
Q 010948 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVV-----------SREEAVMRIKAAVDARKES 221 (497)
Q Consensus 153 VIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lv-----------p~ee~~~KIrAAv~Ar~~~ 221 (497)
+|.=+-.||-+.....+.++.+.+.||+.|-| +. |=.-.-.+|..+. ..++..+-++..++ +..
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iEl--Gi-PfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~--~~~ 88 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIEL--GI-PFSDPVADGPVIQAASLRALAAGVTLADVFELVREIRE--KDP 88 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE--CC-CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh--cCC
Confidence 44445568888888888899999999998865 33 1000111232211 22233333333331 112
Q ss_pred CCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHH
Q 010948 222 GSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCE 273 (497)
Q Consensus 222 g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~ 273 (497)
..++++..=-.-.-..++|+-+++|+ ++|+|.+.++.++- ||++.+.+
T Consensus 89 ~~p~vlm~Y~N~i~~~G~e~f~~~~~---~aGvdGviipDLp~-ee~~~~~~ 136 (258)
T PRK13111 89 TIPIVLMTYYNPIFQYGVERFAADAA---EAGVDGLIIPDLPP-EEAEELRA 136 (258)
T ss_pred CCCEEEEecccHHhhcCHHHHHHHHH---HcCCcEEEECCCCH-HHHHHHHH
Confidence 23455544333333567777777655 78999999998874 56665554
No 398
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=85.42 E-value=15 Score=38.69 Aligned_cols=168 Identities=25% Similarity=0.291 Sum_probs=96.4
Q ss_pred eeecccCChHHHHHHHH------hCCcEEEecchhhhhhhcccCC-CCCCCHH--H-HHHHHHHHHhhc-CcceEeeC--
Q 010948 91 HQGPACFDALSAKLVEK------SGFSFCFTSGFSISAARLALPD-TGFISYG--E-MVDQGQLITQAV-SIPVIGDG-- 157 (497)
Q Consensus 91 iv~p~ayDalSAriae~------aGfdAI~vSG~avSas~lG~PD-~g~ltld--E-ml~~~r~I~ra~-~iPVIaD~-- 157 (497)
-.|||+|-..--++.++ .|.++|.+=|.-- ..+-| .+.-.++ - +...++.|.... .+-||+|.
T Consensus 50 ~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~----~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcL 125 (330)
T COG0113 50 PSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPD----DSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCL 125 (330)
T ss_pred CCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCCc----ccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecc
Confidence 35788887665555544 4777776543221 01111 1222222 2 334456666655 46677774
Q ss_pred ----CCCC------C----CHH---HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHh
Q 010948 158 ----DNGY------G----NAM---NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (497)
Q Consensus 158 ----DtGY------G----~~~---~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~ 220 (497)
++|+ + |.. ...+.+-...+|||+-|---|- ++| +|.|++++.++
T Consensus 126 ceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAGAdivAPSdM--------MDG-----------rV~aIR~aLd~ 186 (330)
T COG0113 126 CEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAGADIVAPSDM--------MDG-----------RVGAIREALDE 186 (330)
T ss_pred cCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHcCCCeeccccc--------ccc-----------hHHHHHHHHHH
Confidence 3332 1 111 2233334445778766644332 232 55556655554
Q ss_pred cC-CCeEEEEeccchh--------------------------cccHHHHHHHHHHHHhcCCCEEEe-ccCCCHHHHHHHH
Q 010948 221 SG-SDIVIVARTDSRQ--------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFC 272 (497)
Q Consensus 221 ~g-~dfvIiARTDA~~--------------------------~~~ldeaIeRAkAY~eAGAD~IfI-eg~~s~eei~~i~ 272 (497)
.| .+..|++=.--++ ...-.||++.+..=.+-|||+|+| |+++-.+.++++.
T Consensus 187 ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVKPal~YLDIi~~vk 266 (330)
T COG0113 187 AGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVKPALPYLDIIRRVK 266 (330)
T ss_pred cCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEcCCchHHHHHHHHH
Confidence 33 3556665433221 013689999999999999999999 8888899999999
Q ss_pred HhCCCCCccc
Q 010948 273 EISPLVPKMA 282 (497)
Q Consensus 273 ~~v~~vP~~~ 282 (497)
+.++ +|+.+
T Consensus 267 ~~~~-lP~~A 275 (330)
T COG0113 267 EEFN-LPVAA 275 (330)
T ss_pred HhcC-CCeEE
Confidence 9887 67643
No 399
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=85.42 E-value=31 Score=32.76 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=65.8
Q ss_pred ChH--HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHH
Q 010948 98 DAL--SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (497)
Q Consensus 98 Dal--SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~ 175 (497)
|+. .++.+.++|++++.+-+.. + ..++.++++. ++..++++++++-+- .. ..+.++.+.
T Consensus 63 d~~~~~~~~~~~~Gad~i~vh~~~--------~---~~~~~~~i~~----~~~~g~~~~~~~~~~-~t---~~~~~~~~~ 123 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTVLGVA--------D---DATIKGAVKA----AKKHGKEVQVDLINV-KD---KVKRAKELK 123 (206)
T ss_pred cchHHHHHHHHHcCCCEEEEeccC--------C---HHHHHHHHHH----HHHcCCEEEEEecCC-CC---hHHHHHHHH
Confidence 554 5777788999988765321 1 1122333333 344589999875332 22 233334556
Q ss_pred HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCC
Q 010948 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGAD 255 (497)
Q Consensus 176 ~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD 255 (497)
+.|++-|.+.-.. .+....+ ...++|+.++..... ..+.+.+-.. .+.+..+.++|||
T Consensus 124 ~~g~d~v~~~pg~--------~~~~~~~--~~~~~i~~l~~~~~~--~~i~v~GGI~----------~~n~~~~~~~Ga~ 181 (206)
T TIGR03128 124 ELGADYIGVHTGL--------DEQAKGQ--NPFEDLQTILKLVKE--ARVAVAGGIN----------LDTIPDVIKLGPD 181 (206)
T ss_pred HcCCCEEEEcCCc--------CcccCCC--CCHHHHHHHHHhcCC--CcEEEECCcC----------HHHHHHHHHcCCC
Confidence 6799999885321 1111111 124566666554321 2333333321 2456688899999
Q ss_pred EEEe
Q 010948 256 VLFI 259 (497)
Q Consensus 256 ~IfI 259 (497)
.+.+
T Consensus 182 ~v~v 185 (206)
T TIGR03128 182 IVIV 185 (206)
T ss_pred EEEE
Confidence 8887
No 400
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=85.38 E-value=8.6 Score=36.36 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCC-CCHHHHHHHHHHHHhhcC-cceEe
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGF-ISYGEMVDQGQLITQAVS-IPVIG 155 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~-ltldEml~~~r~I~ra~~-iPVIa 155 (497)
...+++++. .+..+...+++...++.+.+.|+|.+.++.+--+ ...|+... .. ++..+.+++..+ +||++
T Consensus 94 ~~~~~~~~~-~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~---~~~~~~~~~~g----~~~~~~~~~~~~~~~v~a 165 (212)
T PRK00043 94 VADARALLG-PDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPT---PTKKDAKAPQG----LEGLREIRAAVGDIPIVA 165 (212)
T ss_pred HHHHHHHcC-CCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCC---CCCCCCCCCCC----HHHHHHHHHhcCCCCEEE
Confidence 345555543 3455566788888888888999999988843221 11222211 12 334445555555 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEecCCC
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~ 188 (497)
+ |+.. .++++.+.++|++||-+-...
T Consensus 166 ~-----GGI~--~~~i~~~~~~Ga~gv~~gs~i 191 (212)
T PRK00043 166 I-----GGIT--PENAPEVLEAGADGVAVVSAI 191 (212)
T ss_pred E-----CCcC--HHHHHHHHHcCCCEEEEeHHh
Confidence 8 3331 266778899999999986654
No 401
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=85.37 E-value=44 Score=33.65 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcC-cceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHH
Q 010948 139 VDQGQLITQAVS-IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (497)
Q Consensus 139 l~~~r~I~ra~~-iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~A 217 (497)
+..++.|+.... .+|+||+-+-=.+...+. +..++||+-+.+=. |.| ...|+.+.+.
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~----ma~~aGAd~~tV~g------~A~------------~~TI~~~i~~ 101 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEAR----MAFEAGADWVTVLG------AAD------------DATIKKAIKV 101 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHH----HHHHcCCCEEEEEe------cCC------------HHHHHHHHHH
Q ss_pred HHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec--------cCCC-HHHHHHHHHhCCCCCccceeeecC
Q 010948 218 RKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID--------ALAS-KEEMKAFCEISPLVPKMANMLEGG 288 (497)
Q Consensus 218 r~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe--------g~~s-~eei~~i~~~v~~vP~~~N~l~~~ 288 (497)
+++.| +-.--|-.....+ .+|++-+.++|.|.+++| |..- .+.+..+.+..+ .-+-+.-.|
T Consensus 102 A~~~~----~~v~iDl~~~~~~---~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~---~g~~vAVaG 171 (217)
T COG0269 102 AKEYG----KEVQIDLIGVWDP---EQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD---LGAKVAVAG 171 (217)
T ss_pred HHHcC----CeEEEEeecCCCH---HHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhc---cCceEEEec
Q ss_pred CCCCCCCHHHHHhcCCCEEeccchHHHH--HHHHHHHHHHHHHc
Q 010948 289 GKTPILNPLELEELGFKLVAYPLSLIGV--SVRAMQDALTAIKG 330 (497)
Q Consensus 289 g~tP~lt~~eL~elGv~~Vsyp~~ll~a--a~~Am~~al~~i~~ 330 (497)
|-+| -++.++..+|++.++.|-....+ -.++.++..+.|..
T Consensus 172 GI~~-~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 172 GITP-EDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDK 214 (217)
T ss_pred CCCH-HHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhc
No 402
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=85.29 E-value=49 Score=34.20 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHhC-------ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchh
Q 010948 163 NAMNVKRTVKGYIKAG-------FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AG-------aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~ 235 (497)
++..+.++++.--+++ -.=||||= |.+.+.|.|- .++.++|+..-.+ .+|.|.--|-..
T Consensus 82 tA~EAv~~A~laRe~~~~~~~~~~~wIKLEV--------i~D~~~LlPD--~~etl~Aae~Lv~---eGF~VlPY~~~D- 147 (267)
T CHL00162 82 TAEEAIRMAFLGRELAKQLGQEDNNFVKLEV--------ISDPKYLLPD--PIGTLKAAEFLVK---KGFTVLPYINAD- 147 (267)
T ss_pred CHHHHHHHHHHHHHHhccccccCCCeEEEEE--------eCCCcccCCC--hHHHHHHHHHHHH---CCCEEeecCCCC-
Confidence 5666666665555543 56677774 3334556663 3677888876655 479888765432
Q ss_pred cccHHHHHHHHHHHHhcCCCEEEecc--------CCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEE
Q 010948 236 ALSLEESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (497)
Q Consensus 236 ~~~ldeaIeRAkAY~eAGAD~IfIeg--------~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~V 307 (497)
.--|++++++||-+|++.+ +.++.-++.+.+..+ +|+++ ..|-.+| -+..+-.|||+.-|
T Consensus 148 -------~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~-vpViv---dAGIgt~-sDa~~AmElGaDgV 215 (267)
T CHL00162 148 -------PMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAK-IPVII---DAGIGTP-SEASQAMELGASGV 215 (267)
T ss_pred -------HHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCC-CcEEE---eCCcCCH-HHHHHHHHcCCCEE
Confidence 2459999999999999874 568889999988755 67543 2222222 24577789999988
Q ss_pred eccchH
Q 010948 308 AYPLSL 313 (497)
Q Consensus 308 syp~~l 313 (497)
...+..
T Consensus 216 L~nSaI 221 (267)
T CHL00162 216 LLNTAV 221 (267)
T ss_pred eeccee
Confidence 876553
No 403
>PLN02321 2-isopropylmalate synthase
Probab=85.14 E-value=8.1 Score=44.20 Aligned_cols=110 Identities=19% Similarity=0.109 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHhhc---Cc-ceEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHH
Q 010948 132 FISYGEMVDQGQLITQAV---SI-PVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREE 206 (497)
Q Consensus 132 ~ltldEml~~~r~I~ra~---~i-PVIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee 206 (497)
..|.+|.++.+..+.+.+ +. -+..++|+++- ++..+.+.++.++++||.-|+|-|.+ | ...+++
T Consensus 202 ~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTv-----G------~~~P~~ 270 (632)
T PLN02321 202 RKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTV-----G------YTLPSE 270 (632)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccc-----c------CCCHHH
Confidence 367888888877765533 34 48899988765 57889999999999999999999986 2 334567
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 207 AVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 207 ~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
+.+.|+.+++.-... .+..|-..+ -+++--|+.=+.+..+|||+.|
T Consensus 271 v~~li~~l~~~~~~~-~~v~i~vH~----HND~GlAvANslaAv~AGA~~V 316 (632)
T PLN02321 271 FGQLIADIKANTPGI-ENVIISTHC----QNDLGLSTANTLAGAHAGARQV 316 (632)
T ss_pred HHHHHHHHHHhcCCC-CCceEEEEe----CCCCCHHHHHHHHHHHhCCCEE
Confidence 777777776542210 012222221 1223345566666778888865
No 404
>PLN02979 glycolate oxidase
Probab=85.12 E-value=4.9 Score=43.06 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=56.0
Q ss_pred CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHH
Q 010948 88 PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNV 167 (497)
Q Consensus 88 ~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V 167 (497)
+.|+++=|+-+.-.|+.+.++|+|+|.+|+.+- ...|...-|++-+.+..+.+. ..+||++|. |.-+...+
T Consensus 223 ~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGG-----rqld~~p~t~~~L~ei~~~~~--~~~~Vi~dG--GIr~G~Di 293 (366)
T PLN02979 223 KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA-----RQLDYVPATISALEEVVKATQ--GRIPVFLDG--GVRRGTDV 293 (366)
T ss_pred CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCc-----CCCCCchhHHHHHHHHHHHhC--CCCeEEEeC--CcCcHHHH
Confidence 568999999999999999999999999997763 224544333333333322221 249999883 33233334
Q ss_pred HHHHHHHHHhCccEEEec
Q 010948 168 KRTVKGYIKAGFAGIILE 185 (497)
Q Consensus 168 ~rtVk~l~~AGaAGI~IE 185 (497)
. |. ...||++|-|-
T Consensus 294 ~---KA-LALGAdaV~iG 307 (366)
T PLN02979 294 F---KA-LALGASGIFIG 307 (366)
T ss_pred H---HH-HHcCCCEEEEc
Confidence 4 33 35799999883
No 405
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=85.07 E-value=7.8 Score=40.87 Aligned_cols=167 Identities=22% Similarity=0.280 Sum_probs=102.5
Q ss_pred eecccCChHHHHHHH------HhCCcEEEecchhhhhhhcccCCCCCCCHHH---HHHHHHHHHhhc-CcceEeeC----
Q 010948 92 QGPACFDALSAKLVE------KSGFSFCFTSGFSISAARLALPDTGFISYGE---MVDQGQLITQAV-SIPVIGDG---- 157 (497)
Q Consensus 92 v~p~ayDalSAriae------~aGfdAI~vSG~avSas~lG~PD~g~ltldE---ml~~~r~I~ra~-~iPVIaD~---- 157 (497)
.|||.|=..--++++ +.|.+++.+=|.. .. ....+.-.+++ +...++.|.+.. ++-||+|.
T Consensus 49 smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~----~~-Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~ 123 (323)
T PRK09283 49 SMPGVYRLSIDLLVKEAEEAVELGIPAVALFGVP----EL-KDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDE 123 (323)
T ss_pred CCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCcC----CC-CCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccC
Confidence 577776544444433 4689988876541 11 11112222221 455667777665 47788885
Q ss_pred --CCCC------C---CHHH---HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcC-
Q 010948 158 --DNGY------G---NAMN---VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG- 222 (497)
Q Consensus 158 --DtGY------G---~~~~---V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g- 222 (497)
++|+ | |... ..+.+-.+.+|||+-|---|- ++| ||.|++++.++.|
T Consensus 124 YT~hGHcGil~~g~idND~Tl~~L~~~Al~~A~AGaDiVAPSdM--------MDG-----------rV~aIR~aLd~~g~ 184 (323)
T PRK09283 124 YTSHGHCGILEDGYVDNDETLELLAKQALSQAEAGADIVAPSDM--------MDG-----------RVGAIREALDEAGF 184 (323)
T ss_pred CCCCCceecccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccc--------ccc-----------HHHHHHHHHHHCCC
Confidence 3343 2 3333 344455667899998877664 333 4555555544333
Q ss_pred CCeEEEEeccchh--------------------------cccHHHHHHHHHHHHhcCCCEEEe-ccCCCHHHHHHHHHhC
Q 010948 223 SDIVIVARTDSRQ--------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEIS 275 (497)
Q Consensus 223 ~dfvIiARTDA~~--------------------------~~~ldeaIeRAkAY~eAGAD~IfI-eg~~s~eei~~i~~~v 275 (497)
.+.-|.+-+--++ ...-.|||+.+..=.+-|||+|+| |+++..+.++++.+.+
T Consensus 185 ~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~~ 264 (323)
T PRK09283 185 TDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALPYLDIIRRVKDEF 264 (323)
T ss_pred CCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHhcC
Confidence 2556665543321 012579999999999999999999 8899999999999988
Q ss_pred CCCCccce
Q 010948 276 PLVPKMAN 283 (497)
Q Consensus 276 ~~vP~~~N 283 (497)
+ +|+.+=
T Consensus 265 ~-~PvaaY 271 (323)
T PRK09283 265 N-LPVAAY 271 (323)
T ss_pred C-CCEEEE
Confidence 6 676543
No 406
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=85.04 E-value=14 Score=36.22 Aligned_cols=136 Identities=24% Similarity=0.241 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCC------CCCCCCCC------ccccCHHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSP------KGCGHTRG------RKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~p------KrCGH~~g------k~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiAR 230 (497)
+.+++.+.++.+.+.|+..+.+-..... +-|-+.+. -.++..+ .++.++++ |.+|++..-
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~----~~~~a~~a----GA~fivsp~ 91 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPE----QVDRLADA----GGRLIVTPN 91 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHH----HHHHHHHc----CCCEEECCC
Confidence 5677888888888889988888654310 00101000 0133333 22333333 667887776
Q ss_pred ccchh--------------cccHHHHHHHHHHHHhcCCCEEEe-c-cCCCHHHHHHHHHhCC-CCCccceeeecCCCCCC
Q 010948 231 TDSRQ--------------ALSLEESLRRSRAFADAGADVLFI-D-ALASKEEMKAFCEISP-LVPKMANMLEGGGKTPI 293 (497)
Q Consensus 231 TDA~~--------------~~~ldeaIeRAkAY~eAGAD~IfI-e-g~~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~ 293 (497)
+|... ....+| +....++|||.|-+ + ..-..+.++.+.+.+| .+|. +.-||-++
T Consensus 92 ~~~~v~~~~~~~~~~~~~G~~t~~E----~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipv----vaiGGI~~- 162 (206)
T PRK09140 92 TDPEVIRRAVALGMVVMPGVATPTE----AFAALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPV----FAVGGVTP- 162 (206)
T ss_pred CCHHHHHHHHHCCCcEEcccCCHHH----HHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeE----EEECCCCH-
Confidence 66521 123333 34455799999855 2 2235788888888775 3443 34445332
Q ss_pred CCHHHHHhcCCCEEeccchHHH
Q 010948 294 LNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 294 lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
-+..++.+.|+..|..+..++.
T Consensus 163 ~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 163 ENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHHHHHCCCeEEEEehHhcc
Confidence 4669999999999998888765
No 407
>PRK07534 methionine synthase I; Validated
Probab=85.02 E-value=55 Score=34.53 Aligned_cols=142 Identities=19% Similarity=0.167 Sum_probs=79.8
Q ss_pred HhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc------CcceEeeCCC-C-----CCC--HH----HHH
Q 010948 107 KSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV------SIPVIGDGDN-G-----YGN--AM----NVK 168 (497)
Q Consensus 107 ~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~------~iPVIaD~Dt-G-----YG~--~~----~V~ 168 (497)
+||++.|.+.+|+.+...++.-. ..-...++...+-++++.+ .+-|..++-- | +|. .. .-.
T Consensus 56 ~AGAdiI~TnTy~as~~~l~~~~-~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~~ 134 (336)
T PRK07534 56 DAGSDIILTNSFGGTAARLKLHD-AQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAFH 134 (336)
T ss_pred HhcCCEEEecCcccCHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHHH
Confidence 58999999999986532333222 1112345555444444322 2335555533 3 121 22 122
Q ss_pred HHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch----hcccHHHHHH
Q 010948 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR----QALSLEESLR 244 (497)
Q Consensus 169 rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~----~~~~ldeaIe 244 (497)
..++.|.++||+.+-+|=.. +.+|+..-++++ ++.+.++++--..+.. ....++++++
T Consensus 135 ~qi~~l~~~gvD~l~~ET~p--------------~l~E~~a~~~~~----~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~ 196 (336)
T PRK07534 135 EQAEGLKAGGADVLWVETIS--------------APEEIRAAAEAA----KLAGMPWCGTMSFDTAGRTMMGLTPADLAD 196 (336)
T ss_pred HHHHHHHhCCCCEEEEeccC--------------CHHHHHHHHHHH----HHcCCeEEEEEEECCCCeeCCCCcHHHHHH
Confidence 44778889999999999753 345554444433 3335566655444332 2345778888
Q ss_pred HHHHHHhcCCCEEEeccCCCHHHH
Q 010948 245 RSRAFADAGADVLFIDALASKEEM 268 (497)
Q Consensus 245 RAkAY~eAGAD~IfIeg~~s~eei 268 (497)
.+.. ..+++|+|-+-|...++.+
T Consensus 197 ~~~~-~~~~~~avGvNC~~gp~~~ 219 (336)
T PRK07534 197 LVEK-LGEPPLAFGANCGVGASDL 219 (336)
T ss_pred HHHh-cCCCceEEEecCCCCHHHH
Confidence 7653 2345599999998756655
No 408
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=84.99 E-value=6.3 Score=43.23 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHH
Q 010948 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRA 246 (497)
+.+..+.|.+.++.-+-+-|.. |+.- -+++.++..+.+..-...++. ...+.|-| +... . .+.++++
T Consensus 167 l~eal~~m~~~~~~~lpVVDe~-----g~lv--GiIT~~DLl~~~~~p~a~~d~-~g~l~V~a---ai~~-~-~~~~e~a 233 (486)
T PRK05567 167 LEEALELLHEHRIEKLPVVDDN-----GRLK--GLITVKDIEKAEEFPNACKDE-QGRLRVGA---AVGV-G-ADNEERA 233 (486)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-----CcEE--EEEEhHHhhhhhhCCCccccc-CCCEEEEe---eccc-C-cchHHHH
Confidence 4566778888888877776652 3332 266777776664321111110 11233211 1111 1 2458999
Q ss_pred HHHHhcCCCEEEeccC-----CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEecc
Q 010948 247 RAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (497)
Q Consensus 247 kAY~eAGAD~IfIeg~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp 310 (497)
+++.++|+|.|+++.. .-.+.++.+.+.+|.+|+++ +...+ .-+..+|.++|+..|.++
T Consensus 234 ~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~----g~v~t-~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 234 EALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA----GNVAT-AEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE----eccCC-HHHHHHHHHcCCCEEEEC
Confidence 9999999999998753 22356777777776555432 21211 124578999999999764
No 409
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=84.97 E-value=3.4 Score=40.74 Aligned_cols=175 Identities=21% Similarity=0.310 Sum_probs=99.5
Q ss_pred CChH-HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHH
Q 010948 97 FDAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (497)
Q Consensus 97 yDal-SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~ 175 (497)
.|+. .|+..++.|++-+++-=+-- +.-|. ......++.|++.+.+||.+|. |.-+ .+.++++.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLda--a~~g~--------~~n~~~i~~i~~~~~~~i~vgG--GIrs----~ed~~~ll 92 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDA--AKEGR--------GSNLELIKEIAKETGIPIQVGG--GIRS----IEDAERLL 92 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHH--HCCTH--------HHHHHHHHHHHHHSSSEEEEES--SE-S----HHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccC--cccCc--------hhHHHHHHHHHhcCCccEEEeC--ccCc----HHHHHHHH
Confidence 3544 34666788999999985432 12232 3566788899999999999872 2223 34456788
Q ss_pred HhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEE---Eecc------chh---cccHHHHH
Q 010948 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---ARTD------SRQ---ALSLEESL 243 (497)
Q Consensus 176 ~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIi---ARTD------A~~---~~~ldeaI 243 (497)
++||.-|.|--.. +.++ ++++++.+.. |.+-+++ +|-. .-. ...+.|.
T Consensus 93 ~~Ga~~Vvigt~~------------~~~~-~~l~~~~~~~------g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~- 152 (229)
T PF00977_consen 93 DAGADRVVIGTEA------------LEDP-ELLEELAERY------GSQRIVVSLDARDGYKVATNGWQESSGIDLEEF- 152 (229)
T ss_dssp HTT-SEEEESHHH------------HHCC-HHHHHHHHHH------GGGGEEEEEEEEETEEEEETTTTEEEEEEHHHH-
T ss_pred HhCCCEEEeChHH------------hhch-hHHHHHHHHc------CcccEEEEEEeeeceEEEecCccccCCcCHHHH-
Confidence 8999988772211 1111 3444443222 2211222 1222 101 1234444
Q ss_pred HHHHHHHhcCCCEEEeccC--------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 010948 244 RRSRAFADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIeg~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll 314 (497)
++.+.+.|+.-+++-.+ ++.+.++++++.+. +|+ +..||-...-++.+|++.|+.-|+.+..++
T Consensus 153 --~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~-~~v----iasGGv~~~~Dl~~l~~~G~~gvivg~al~ 224 (229)
T PF00977_consen 153 --AKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAVN-IPV----IASGGVRSLEDLRELKKAGIDGVIVGSALH 224 (229)
T ss_dssp --HHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHHS-SEE----EEESS--SHHHHHHHHHTTECEEEESHHHH
T ss_pred --HHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHcC-CCE----EEecCCCCHHHHHHHHHCCCcEEEEehHhh
Confidence 55566779998887654 45677888888764 454 344454333357888889999999988765
No 410
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=84.95 E-value=19 Score=38.22 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCccEEEecCCC-----------CCCCCCCCCCccccCH-HHHHHHHHHHHHHHHhcCCCeEEEEeccch
Q 010948 167 VKRTVKGYIKAGFAGIILEDQV-----------SPKGCGHTRGRKVVSR-EEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~-----------~pKrCGH~~gk~lvp~-ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~ 234 (497)
..+++++.+++|++||.|--.- ..||...-+| .+-.. .-..+-|++++++ .|++|.|--|--..
T Consensus 152 f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGG-slenR~Rf~~eii~aIr~~---vg~~~~v~vRls~~ 227 (370)
T cd02929 152 YVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGG-SLENRARFWRETLEDTKDA---VGDDCAVATRFSVD 227 (370)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCC-ChHhhhHHHHHHHHHHHHH---cCCCceEEEEecHH
Confidence 4455677788999999996542 1344433233 22211 1222333333333 36789888886543
Q ss_pred h------cccHHHHHHHHHHHHhcCCCEEEeccC---------------CCHHHHHHHHHhCCCCCccceeeecCCC-CC
Q 010948 235 Q------ALSLEESLRRSRAFADAGADVLFIDAL---------------ASKEEMKAFCEISPLVPKMANMLEGGGK-TP 292 (497)
Q Consensus 235 ~------~~~ldeaIeRAkAY~eAGAD~IfIeg~---------------~s~eei~~i~~~v~~vP~~~N~l~~~g~-tP 292 (497)
. ...++|+++-++.+++. .|++-+-.- ...+.++++.+.++ +|++.+ ++- +|
T Consensus 228 ~~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pvi~~----G~i~~~ 301 (370)
T cd02929 228 ELIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTS-KPVVGV----GRFTSP 301 (370)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCC-CCEEEe----CCCCCH
Confidence 2 12488999888888775 687755321 01234455555554 565432 221 11
Q ss_pred CCCHHHHHhcC-CCEEeccchHHHHHHHHHHHHHHHHHcCCC
Q 010948 293 ILNPLELEELG-FKLVAYPLSLIGVSVRAMQDALTAIKGGRI 333 (497)
Q Consensus 293 ~lt~~eL~elG-v~~Vsyp~~ll~aa~~Am~~al~~i~~g~~ 333 (497)
-..+++-+-| +..|.++=.++.-- +....+++|+.
T Consensus 302 -~~~~~~l~~g~~D~V~~gR~~ladP-----~l~~k~~~g~~ 337 (370)
T cd02929 302 -DKMVEVVKSGILDLIGAARPSIADP-----FLPKKIREGRI 337 (370)
T ss_pred -HHHHHHHHcCCCCeeeechHhhhCc-----hHHHHHHcCCc
Confidence 1234444444 88887765544322 34455666643
No 411
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=84.93 E-value=34 Score=32.10 Aligned_cols=167 Identities=15% Similarity=0.201 Sum_probs=82.4
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccE
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAG 181 (497)
++.+.++|++.+-+. +. ...-.|.. .+++ ..++.|.+.++.|+.++.= +-++ .+-++.+.++|++|
T Consensus 18 ~~~~~~~G~~~i~l~---~~-d~~~~~~~-~~~~----~~~~~i~~~~~~~~~v~l~--~~d~---~~~~~~~~~~g~dg 83 (211)
T cd00429 18 LKRLEEAGADWIHID---VM-DGHFVPNL-TFGP----PVVKALRKHTDLPLDVHLM--VENP---ERYIEAFAKAGADI 83 (211)
T ss_pred HHHHHHcCCCEEEEe---cc-cCCCCCcc-ccCH----HHHHHHHhhCCCcEEEEee--eCCH---HHHHHHHHHcCCCE
Confidence 456777899888774 10 00001211 1222 3445555433445444321 1133 33466777999999
Q ss_pred EEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEecc
Q 010948 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (497)
Q Consensus 182 I~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg 261 (497)
|++=+.. .++..+.++.++.. +..+.+...++. . .++.++|.+. +|.+++-+
T Consensus 84 v~vh~~~---------------~~~~~~~~~~~~~~----~~~~g~~~~~~~----~----~~~~~~~~~~-~d~i~~~~ 135 (211)
T cd00429 84 ITFHAEA---------------TDHLHRTIQLIKEL----GMKAGVALNPGT----P----VEVLEPYLDE-VDLVLVMS 135 (211)
T ss_pred EEECccc---------------hhhHHHHHHHHHHC----CCeEEEEecCCC----C----HHHHHHHHhh-CCEEEEEE
Confidence 8775532 12333334333322 222222222111 1 3556666544 78775533
Q ss_pred CC---C--------HHHHHHHHHhCC----CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 262 LA---S--------KEEMKAFCEISP----LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 262 ~~---s--------~eei~~i~~~v~----~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
+. + .+.++++.+..+ .+|. ...||-++ -+..++.+.|+..++.+..++.
T Consensus 136 ~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi----~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 136 VNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLI----EVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred ECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEE----EEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 21 1 123444433322 1332 22335544 4568889999999999987764
No 412
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=84.91 E-value=16 Score=36.61 Aligned_cols=147 Identities=19% Similarity=0.185 Sum_probs=84.1
Q ss_pred HHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhC---
Q 010948 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAG--- 178 (497)
Q Consensus 103 riae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AG--- 178 (497)
+.+.++|++.|=+++... .|+ ++ +.++.+.+.. +..+.+=.. ++ .+.++...++|
T Consensus 27 ~~L~~~Gv~~iEvg~~~~------~~~----~~----~~~~~l~~~~~~~~~~~l~r---~~----~~~v~~a~~~~~~~ 85 (268)
T cd07940 27 RQLDELGVDVIEAGFPAA------SPG----DF----EAVKRIAREVLNAEICGLAR---AV----KKDIDAAAEALKPA 85 (268)
T ss_pred HHHHHcCCCEEEEeCCCC------CHH----HH----HHHHHHHHhCCCCEEEEEcc---CC----HhhHHHHHHhCCCC
Confidence 456778999998875332 122 11 3344444422 344443222 12 23345555666
Q ss_pred -ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 179 -FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 179 -aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
++.|++-+..++. |...+-=.+.++.++++..+++..++.|..+.+. =.|+. ....+...+.++.+.++|||.|
T Consensus 86 ~~~~i~i~~~~s~~---~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~-~~~~~-~~~~~~~~~~~~~~~~~G~~~i 160 (268)
T cd07940 86 KVDRIHTFIATSDI---HLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFS-AEDAT-RTDLDFLIEVVEAAIEAGATTI 160 (268)
T ss_pred CCCEEEEEecCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEe-eecCC-CCCHHHHHHHHHHHHHcCCCEE
Confidence 9999998765322 1100001245677788877777666555433322 22332 2457888899999999999999
Q ss_pred Eec---cCCCHHHHHHHHHhC
Q 010948 258 FID---ALASKEEMKAFCEIS 275 (497)
Q Consensus 258 fIe---g~~s~eei~~i~~~v 275 (497)
.+. |.-+++++..+.+.+
T Consensus 161 ~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 161 NIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred EECCCCCCCCHHHHHHHHHHH
Confidence 885 345677777666543
No 413
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=84.84 E-value=26 Score=37.96 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=77.7
Q ss_pred HHHHHhhcCcceEeeCCCC-CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHH-H
Q 010948 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA-R 218 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtG-YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~A-r 218 (497)
+|++....+-||+.=+=-- -| ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..+++. .
T Consensus 115 ~R~~lgv~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IK-DDE~-------l~~q~~~p~~eRv~a~~~a~~~a~ 186 (391)
T cd08209 115 IRQRLGVHDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIK-DDEI-------LFDNPLAPALERIRACRPVLQEVY 186 (391)
T ss_pred HHHHhCCCCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCccc-cccc-------CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677777789998766554 35 578889999999999998765 2321 2334566666655554444433 3
Q ss_pred HhcCCC--eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCC-HHHHHHHHHh
Q 010948 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEI 274 (497)
Q Consensus 219 ~~~g~d--fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s-~eei~~i~~~ 274 (497)
++.|.. +.+|- | .+.+|.++|++...++|+.++++.-... -.-++.+.+.
T Consensus 187 ~eTG~~~~ya~Ni-T-----~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~ 239 (391)
T cd08209 187 EQTGRRTLYAVNL-T-----GPVFTLKEKARRLVEAGANALLFNVFAYGLDVLEALASD 239 (391)
T ss_pred HhhCCcceEEEEc-C-----CCHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHhc
Confidence 334432 22221 2 2358999999999999999999865433 3556666663
No 414
>PRK08999 hypothetical protein; Provisional
Probab=84.84 E-value=14 Score=37.49 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHH
Q 010948 128 PDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (497)
Q Consensus 128 PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~ 207 (497)
++...-.+.+.+.+++.+++..++++|++ .-++...+.|++|||+.....|
T Consensus 166 k~~~~~~~~~~~~~l~~~~~~~~~~liin------------d~~~la~~~~~~GvHl~~~d~~----------------- 216 (312)
T PRK08999 166 PQLPPAAYRALARAALGLCRRAGAQLLLN------------GDPELAEDLGADGVHLTSAQLA----------------- 216 (312)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEEE------------CcHHHHHhcCCCEEEcChhhcC-----------------
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccC-----------CCHHHHHHHHHhCC
Q 010948 208 VMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISP 276 (497)
Q Consensus 208 ~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~-----------~s~eei~~i~~~v~ 276 (497)
...++. ++++.+|-.-+-. ++.++...+.|||.|++-.+ ...+.++++++.+.
T Consensus 217 ------~~~~r~-~~~~~~ig~S~h~---------~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~ 280 (312)
T PRK08999 217 ------ALAARP-LPAGRWVAASCHD---------AEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVP 280 (312)
T ss_pred ------hHhhcc-CCCCCEEEEecCC---------HHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCC
Q ss_pred CCCccceeeecCCCCCCCCHHHHHhcCCCEE
Q 010948 277 LVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (497)
Q Consensus 277 ~vP~~~N~l~~~g~tP~lt~~eL~elGv~~V 307 (497)
+| +++-||-++ -+..++.+.|+..|
T Consensus 281 -~P----v~AiGGI~~-~~~~~~~~~g~~gv 305 (312)
T PRK08999 281 -LP----VYALGGLGP-GDLEEAREHGAQGI 305 (312)
T ss_pred -CC----EEEECCCCH-HHHHHHHHhCCCEE
No 415
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=84.79 E-value=27 Score=38.07 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=76.8
Q ss_pred HHHHHhhcCcceEeeCCCC-CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH-HH
Q 010948 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-AR 218 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtG-YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~-Ar 218 (497)
+|++....+-||+.-+=-- -| ++.+..+.+.++...|++=|| .|.. ...++..|.++-+..+..+++ +.
T Consensus 122 ~R~~lgv~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iK-DDE~-------l~~q~~~p~~~Rv~~~~~a~~~a~ 193 (412)
T cd08213 122 VREILGIKDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVK-DDEN-------LTSQPFNRFEERAKESLKARDKAE 193 (412)
T ss_pred HHHHhCCCCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccc-cCcc-------CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5666677789999887665 45 678899999999999998775 2322 233456666655444444433 23
Q ss_pred HhcCCC--eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCC-HHHHHHHHH
Q 010948 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCE 273 (497)
Q Consensus 219 ~~~g~d--fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s-~eei~~i~~ 273 (497)
++.|.. +.+|.- .+.+|.++|++...++|++++++..... -.-++.+.+
T Consensus 194 ~eTG~~~~y~~NiT------~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~~l~~l~~ 245 (412)
T cd08213 194 AETGERKAYLANIT------APVREMERRAELVADLGGKYVMIDVVVAGWSALQYLRD 245 (412)
T ss_pred HhhCCcceEEEEec------CCHHHHHHHHHHHHHhCCCeEEeeccccChHHHHHHHH
Confidence 334422 344422 2369999999999999999999875542 334555554
No 416
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=84.77 E-value=13 Score=37.68 Aligned_cols=169 Identities=18% Similarity=0.131 Sum_probs=97.2
Q ss_pred HHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccc----hhcccHHHHHHHHH
Q 010948 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS----RQALSLEESLRRSR 247 (497)
Q Consensus 172 k~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA----~~~~~ldeaIeRAk 247 (497)
....++||+=|-+=+.. ...-+.|- ..-|+.+++.. ..++..+-|--. +....++-..+...
T Consensus 15 ~~A~~~GAdRiELC~~L--------a~GG~TPS---yG~~k~a~~~~---~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~ 80 (241)
T COG3142 15 LAAQAAGADRIELCDAL--------AEGGLTPS---YGVIKEAVELS---KIPVYVMIRPRGGDFVYSDDELEIMLEDIR 80 (241)
T ss_pred HHHHHcCCceeehhhcc--------ccCCCCCC---HHHHHHHHhhc---CCceEEEEecCCCCcccChHHHHHHHHHHH
Confidence 34567888877664433 22224443 44566666653 356666656433 22345677888999
Q ss_pred HHHhcCCCEEEeccCC-----CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHH
Q 010948 248 AFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQ 322 (497)
Q Consensus 248 AY~eAGAD~IfIeg~~-----s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~ 322 (497)
.+.++|++.|++-+++ +.+.++++.+.-.+.++-+-+--.--..|...+++|-++||.||+..... ..+.....
T Consensus 81 ~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~-~sa~eg~~ 159 (241)
T COG3142 81 LARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGK-ASALEGLD 159 (241)
T ss_pred HHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCc-CchhhhHH
Confidence 9999999999987764 45677777765433333222211111224457899999999999985544 33444443
Q ss_pred HHHHHHH--cCCCCC-CCC---CCCHHHHHHhcCcccHH
Q 010948 323 DALTAIK--GGRIPS-PGS---MPSFQEIKETLGFNTYY 355 (497)
Q Consensus 323 ~al~~i~--~g~~~~-~~~---~~~~~ei~~lvg~~~~~ 355 (497)
...+-+. .|++.. ++. .-++++|....|..++-
T Consensus 160 ~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~H 198 (241)
T COG3142 160 LLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEVH 198 (241)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCchhhh
Confidence 3333332 344321 222 22456676677776543
No 417
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=84.77 E-value=16 Score=38.22 Aligned_cols=120 Identities=22% Similarity=0.328 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
..+.+....+.+.+.|...+||--.. .. ..+-+++|+|++++. |++.-| +.|+......++|
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~-------~~------~~~d~~~v~avRe~~---g~~~~l--~iDan~~~~~~~A 204 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGV-------GD------GDEDLERVRALREAV---GDDVRL--MVDANGGWTLEEA 204 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCC-------Cc------hHHHHHHHHHHHHHh---CCCceE--EEeCCCCcCHHHH
Confidence 45677788888888999999995432 11 125578999888885 445444 4688888889999
Q ss_pred HHHHHHHHhcCCCEEEeccC---CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcC-CCEE
Q 010948 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLV 307 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~---~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elG-v~~V 307 (497)
++-+++.++.| ..|+|-+ .+.+.++++.+.++ +|..+.=. .+-.....+|-+.| +..|
T Consensus 205 ~~~~~~l~~~~--l~~iEeP~~~~d~~~~~~l~~~~~-~PIa~gEs----~~~~~~~~~l~~~~a~div 266 (372)
T COG4948 205 IRLARALEEYG--LEWIEEPLPPDDLEGLRELRAATS-TPIAAGES----VYTRWDFRRLLEAGAVDIV 266 (372)
T ss_pred HHHHHHhcccC--cceEECCCCccCHHHHHHHHhcCC-CCEecCcc----cccHHHHHHHHHcCCCCee
Confidence 99999999998 7788765 35678888888765 56543211 11123456777777 4444
No 418
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=84.76 E-value=43 Score=33.12 Aligned_cols=146 Identities=21% Similarity=0.219 Sum_probs=81.2
Q ss_pred HHHHHhhcCcceEeeCCCCCCC-HHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHh
Q 010948 142 GQLITQAVSIPVIGDGDNGYGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtGYG~-~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~ 220 (497)
++.+.+. +.++++|.=.. + +.++.+.++.+.++|++.+.+=-.. | .+.|++++++.++
T Consensus 46 i~~l~~~-~~~i~~D~Kl~--Di~~t~~~~i~~~~~~gad~itvH~~a---------g---------~~~i~~~~~~~~~ 104 (230)
T PRK00230 46 VRELKQR-GFKVFLDLKLH--DIPNTVAKAVRALAKLGVDMVNVHASG---------G---------PRMMKAAREALEP 104 (230)
T ss_pred HHHHHhc-CCCEEEEeehh--hccccHHHHHHHHHHcCCCEEEEcccC---------C---------HHHHHHHHHHhhc
Confidence 4445443 56888897653 3 2356778888899999998873321 1 2356667766543
Q ss_pred cC-C-CeEEEEeccc---hh-----cccHHHH-HHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCC
Q 010948 221 SG-S-DIVIVARTDS---RQ-----ALSLEES-LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGG 289 (497)
Q Consensus 221 ~g-~-dfvIiARTDA---~~-----~~~ldea-IeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g 289 (497)
.+ + -+.|.--|-- .. ..++++. +.+++...++|+|.+...... ...+++++ + +.+.-+.. |
T Consensus 105 ~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~~-~~~ir~~~---~--~~~~~v~p--G 176 (230)
T PRK00230 105 KSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQE-AAAIREAT---G--PDFLLVTP--G 176 (230)
T ss_pred cCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChHH-HHHHHhhc---C--CceEEEcC--C
Confidence 21 1 1222222321 00 1123444 467777889999999875322 23344332 2 12222221 2
Q ss_pred CCCC----------CCHHHHHhcCCCEEeccchHHHH
Q 010948 290 KTPI----------LNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 290 ~tP~----------lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
-.|. .++.+..+.|...+++|-..+.+
T Consensus 177 I~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a 213 (230)
T PRK00230 177 IRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQA 213 (230)
T ss_pred cCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCC
Confidence 2221 26788889999999998775543
No 419
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.73 E-value=3.4 Score=44.70 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCCEEEeccCC--C---HHHHHHHHHhCCCCCccc-eeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 010948 240 EESLRRSRAFADAGADVLFIDALA--S---KEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYPL 311 (497)
Q Consensus 240 deaIeRAkAY~eAGAD~IfIeg~~--s---~eei~~i~~~v~~vP~~~-N~l~~~g~tP~lt~~eL~elGv~~Vsyp~ 311 (497)
++.++|+.+..+||||+|++.+-. + .+.++++.+.+|.+++++ |+. | .-....|.++|+..|.++.
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~-----T-~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV-----T-KEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecC-----C-HHHHHHHHHcCCCEEEECC
Confidence 568999999999999999987532 2 234556666666544432 322 1 1245788999999988764
No 420
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=84.64 E-value=4.5 Score=42.09 Aligned_cols=93 Identities=17% Similarity=0.278 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~ 157 (497)
...+++++ ..+..+++.+-+.--|+.++++|.|+|.+-|+..- -+.| ++.+ ........|++.+++|||+=
T Consensus 126 ~~~i~~l~-~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAG-GH~g-~~~~-----~~~~L~~~v~~~~~iPViaA- 196 (330)
T PF03060_consen 126 PEVIERLH-AAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAG-GHRG-FEVG-----STFSLLPQVRDAVDIPVIAA- 196 (330)
T ss_dssp HHHHHHHH-HTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSS-EE----SSG------HHHHHHHHHHH-SS-EEEE-
T ss_pred HHHHHHHH-HcCCccccccCCHHHHHHhhhcCCCEEEEeccccC-CCCC-cccc-----ceeeHHHHHhhhcCCcEEEe-
Confidence 44455544 45678888999999999999999999998876522 2333 2212 34445556667777999983
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 158 DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
.|.++...+ ..+...||+||.+
T Consensus 197 -GGI~dg~~i----aaal~lGA~gV~~ 218 (330)
T PF03060_consen 197 -GGIADGRGI----AAALALGADGVQM 218 (330)
T ss_dssp -SS--SHHHH----HHHHHCT-SEEEE
T ss_pred -cCcCCHHHH----HHHHHcCCCEeec
Confidence 234454333 3556789999998
No 421
>PRK00915 2-isopropylmalate synthase; Validated
Probab=84.63 E-value=14 Score=40.99 Aligned_cols=109 Identities=21% Similarity=0.157 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHh---hcCcceEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHH
Q 010948 132 FISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (497)
Q Consensus 132 ~ltldEml~~~r~I~r---a~~iPVIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~ 207 (497)
..+.+|+++.+....+ ..+.-|.+++++++- ++..+.+.++.+.++||..|.|-|.. | ...++++
T Consensus 112 ~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTv-----G------~~~P~~~ 180 (513)
T PRK00915 112 KMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTV-----G------YTTPEEF 180 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCC-----C------CCCHHHH
Confidence 3678888887766544 335778999998865 56789999999999999999999986 3 3345677
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 208 VMRIKAAVDARKES-GSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 208 ~~KIrAAv~Ar~~~-g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
.+.|+.+++.-... +..+=+=+.. ++--|+.-+.+..+|||+.|
T Consensus 181 ~~~i~~l~~~~~~~~~v~l~~H~HN------D~GlAvANslaAv~aGa~~V 225 (513)
T PRK00915 181 GELIKTLRERVPNIDKAIISVHCHN------DLGLAVANSLAAVEAGARQV 225 (513)
T ss_pred HHHHHHHHHhCCCcccceEEEEecC------CCCHHHHHHHHHHHhCCCEE
Confidence 77777776553110 0112222222 23345566666778888865
No 422
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=84.61 E-value=14 Score=38.56 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHHhC-ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHH
Q 010948 162 GNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE 240 (497)
Q Consensus 162 G~~~~V~rtVk~l~~AG-aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ld 240 (497)
+++......++++.+.| ...+||-- |. .+.++-+++|++++++. |+++.| +-|+......+
T Consensus 141 ~~~~~~~~~~~~~~~~G~f~~~KiKv-------g~------~~~~~d~~~v~avr~~~---g~~~~l--~iDaN~~~~~~ 202 (365)
T cd03318 141 GDTERDIAEAEEMLEAGRHRRFKLKM-------GA------RPPADDLAHVEAIAKAL---GDRASV--RVDVNQAWDES 202 (365)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEEe-------CC------CChHHHHHHHHHHHHHc---CCCcEE--EEECCCCCCHH
Confidence 45555556667777888 99999932 21 12455578888887763 555543 57888888899
Q ss_pred HHHHHHHHHHhcCCCEEEeccCC---CHHHHHHHHHhCCCCCcc
Q 010948 241 ESLRRSRAFADAGADVLFIDALA---SKEEMKAFCEISPLVPKM 281 (497)
Q Consensus 241 eaIeRAkAY~eAGAD~IfIeg~~---s~eei~~i~~~v~~vP~~ 281 (497)
+|++.++++.+.| ..|+|-+- +.+.++++.+..+ +|..
T Consensus 203 ~A~~~~~~l~~~~--~~~iEeP~~~~~~~~~~~l~~~~~-~pia 243 (365)
T cd03318 203 TAIRALPRLEAAG--VELIEQPVPRENLDGLARLRSRNR-VPIM 243 (365)
T ss_pred HHHHHHHHHHhcC--cceeeCCCCcccHHHHHHHHhhcC-CCEE
Confidence 9999999999986 56888653 4567888888754 5644
No 423
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=84.60 E-value=52 Score=34.57 Aligned_cols=159 Identities=9% Similarity=0.038 Sum_probs=82.4
Q ss_pred ceeecccCCh--HHHHHHHHhCCcEEEecchhhhhhhcccCC---------CC--------CCCHHHHHHHHHHHHhhcC
Q 010948 90 VHQGPACFDA--LSAKLVEKSGFSFCFTSGFSISAARLALPD---------TG--------FISYGEMVDQGQLITQAVS 150 (497)
Q Consensus 90 ~iv~p~ayDa--lSAriae~aGfdAI~vSG~avSas~lG~PD---------~g--------~ltldEml~~~r~I~ra~~ 150 (497)
|+.+..-+|. -..+.+..+||-++-+.+...- ...|.|- .+ ....+.++++.+. ...+
T Consensus 58 Pi~lAsG~~~~~~~~~~~~~~G~Gavv~kTvt~~-p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~--~~~~ 134 (335)
T TIGR01036 58 PLGLAAGFDKDGEAIDALGAMGFGFLEIGTVTPK-PQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKR--ARYK 134 (335)
T ss_pred CcEeCCccCCCHHHHHHHHhcCCCEEEeCCcCCC-CCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhh--ccCC
Confidence 5555544553 2345556678888888865532 1234331 11 1234566665554 2234
Q ss_pred cceEeeCCCCC------CCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCcc-ccCHHHHHHHHHHHHHHHHhcC-
Q 010948 151 IPVIGDGDNGY------GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK-VVSREEAVMRIKAAVDARKESG- 222 (497)
Q Consensus 151 iPVIaD~DtGY------G~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~-lvp~ee~~~KIrAAv~Ar~~~g- 222 (497)
.||++-+ .+. +..+...+.++++.+ .|+++-|.=. |.|..+.. ....+...+-+++++++.+.+.
T Consensus 135 ~~i~vsi-~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlS-----cPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~ 207 (335)
T TIGR01036 135 GPIGINI-GKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVS-----SPNTPGLRDLQYKAELRDLLTAVKQEQDGLRR 207 (335)
T ss_pred CcEEEEE-eCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEcc-----CCCCCCcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 6776665 221 124556666666554 4888876543 66654432 3333444444555554443110
Q ss_pred -CCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 223 -SDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 223 -~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
...-|..+.-... ..++..+-|++..++|||.|.+-
T Consensus 208 ~~~~Pv~vKLsP~~--~~~~i~~ia~~~~~~GadGi~l~ 244 (335)
T TIGR01036 208 VHRVPVLVKIAPDL--TESDLEDIADSLVELGIDGVIAT 244 (335)
T ss_pred ccCCceEEEeCCCC--CHHHHHHHHHHHHHhCCcEEEEE
Confidence 0133444432221 22356667788889999999763
No 424
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=84.58 E-value=8.5 Score=40.45 Aligned_cols=165 Identities=26% Similarity=0.317 Sum_probs=101.6
Q ss_pred eecccCChHHHHHHH------HhCCcEEEecchhhhhhhcccCC-CCCCCHH---HHHHHHHHHHhhc-CcceEeeC---
Q 010948 92 QGPACFDALSAKLVE------KSGFSFCFTSGFSISAARLALPD-TGFISYG---EMVDQGQLITQAV-SIPVIGDG--- 157 (497)
Q Consensus 92 v~p~ayDalSAriae------~aGfdAI~vSG~avSas~lG~PD-~g~ltld---Eml~~~r~I~ra~-~iPVIaD~--- 157 (497)
.|||.|=..--.+++ +.|.+++.+=|.. . . -| .+.-.++ =+...++.|.+.+ ++-||+|.
T Consensus 41 sMPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~---~-~--Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc 114 (314)
T cd00384 41 SMPGVYRLSVDSLVEEAEELADLGIRAVILFGIP---E-H--KDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLC 114 (314)
T ss_pred CCCCceeeCHHHHHHHHHHHHHCCCCEEEEECCC---C-C--CCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeecc
Confidence 577776554444443 3588888875541 0 1 12 1222222 1455667777766 47788884
Q ss_pred ---CCCC------C---CHHH---HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcC
Q 010948 158 ---DNGY------G---NAMN---VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (497)
Q Consensus 158 ---DtGY------G---~~~~---V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g 222 (497)
++|+ | |... ..+.+-.+.+|||+.|---|- ++| +|.|++++.++.|
T Consensus 115 ~YT~hGHcGil~~~~idND~Tl~~L~k~Als~A~AGADiVAPSdM--------MDG-----------rV~aIR~aLd~~g 175 (314)
T cd00384 115 EYTDHGHCGILKDDYVDNDATLELLAKIAVSHAEAGADIVAPSDM--------MDG-----------RVAAIREALDEAG 175 (314)
T ss_pred CCCCCCcceeccCCcCccHHHHHHHHHHHHHHHHcCCCeeecccc--------ccc-----------HHHHHHHHHHHCC
Confidence 3343 1 2223 334445566899988876663 333 5555555555433
Q ss_pred -CCeEEEEeccchh--------------------------cccHHHHHHHHHHHHhcCCCEEEe-ccCCCHHHHHHHHHh
Q 010948 223 -SDIVIVARTDSRQ--------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEI 274 (497)
Q Consensus 223 -~dfvIiARTDA~~--------------------------~~~ldeaIeRAkAY~eAGAD~IfI-eg~~s~eei~~i~~~ 274 (497)
.+.-|.+-+--++ ...-.||++.+..=.+-|||+|+| |+++-.+.++++.+.
T Consensus 176 ~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~ 255 (314)
T cd00384 176 FSDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALAYLDIIRDVRER 255 (314)
T ss_pred CCCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHHh
Confidence 3456666543321 013588999999999999999999 889999999999988
Q ss_pred CCCCCccc
Q 010948 275 SPLVPKMA 282 (497)
Q Consensus 275 v~~vP~~~ 282 (497)
+. +|+.+
T Consensus 256 ~~-~Pvaa 262 (314)
T cd00384 256 FD-LPVAA 262 (314)
T ss_pred cC-CCEEE
Confidence 74 67643
No 425
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=84.42 E-value=46 Score=33.71 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+...+.+.+++++++||+-|=|-.+. ...|...++.++-.+|+.-++++.++. .+..| =-|.... ++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~s------t~p~~~~i~~~~E~~rl~~~v~~i~~~-~~~pl--SIDT~~~----~v 88 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGES------TRPGADPVSVEEELERVIPVLEALRGE-LDVLI--SVDTFRA----EV 88 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCc------CCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCcE--EEeCCCH----HH
Confidence 45678888899999999999884332 223445566677778877666665432 13333 2355442 33
Q ss_pred HHHHHHHHhcCCCEEE-eccCCCHHHHHHHHHhCCCCCccc
Q 010948 243 LRRSRAFADAGADVLF-IDALASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 243 IeRAkAY~eAGAD~If-Ieg~~s~eei~~i~~~v~~vP~~~ 282 (497)
++.|- ++|+|+|- +.+....+++..+++... .+.++
T Consensus 89 ~e~al---~~G~~iINdisg~~~~~~~~~l~~~~~-~~vV~ 125 (257)
T cd00739 89 ARAAL---EAGADIINDVSGGSDDPAMLEVAAEYG-APLVL 125 (257)
T ss_pred HHHHH---HhCCCEEEeCCCCCCChHHHHHHHHcC-CCEEE
Confidence 33333 35999887 666553357777777663 45543
No 426
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=84.38 E-value=23 Score=37.17 Aligned_cols=138 Identities=19% Similarity=0.188 Sum_probs=81.2
Q ss_pred HHHHHhC-CcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCcc
Q 010948 103 KLVEKSG-FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (497)
Q Consensus 103 riae~aG-fdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaA 180 (497)
+.+++++ ++++-+= |.-- .-|..+.+ ...+.+-..++.+...+.+||.+=+-- +..++...++.++++|++
T Consensus 116 ~~~~~~~~ad~ielNiScPn---t~g~~~l~-~~~e~l~~l~~~vk~~~~~Pv~vKl~P---~~~di~~iA~~~~~~g~D 188 (310)
T COG0167 116 RLLEEAGDADAIELNISCPN---TPGGRALG-QDPELLEKLLEAVKAATKVPVFVKLAP---NITDIDEIAKAAEEAGAD 188 (310)
T ss_pred HHHHhcCCCCEEEEEccCCC---CCChhhhc-cCHHHHHHHHHHHHhcccCceEEEeCC---CHHHHHHHHHHHHHcCCc
Confidence 4556666 6766654 3221 12333322 122333334556666677999998755 667888999999999999
Q ss_pred EEEecCCCC-----------CC---CCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHH
Q 010948 181 GIILEDQVS-----------PK---GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (497)
Q Consensus 181 GI~IEDq~~-----------pK---rCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRA 246 (497)
||.+-..+. |+ .-|-..|+++-|.. .+-|+.. ++.+++++-|++=-- ....++ |
T Consensus 189 gl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~a--l~~v~~l---~~~~~~~ipIIGvGG---I~s~~D----A 256 (310)
T COG0167 189 GLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIA--LRVVAEL---YKRLGGDIPIIGVGG---IETGED----A 256 (310)
T ss_pred EEEEEeeccccccccccccccccCcCCCCcCcccchHHH--HHHHHHH---HHhcCCCCcEEEecC---cCcHHH----H
Confidence 998766432 11 12334577777764 3333322 333456788886532 223344 4
Q ss_pred HHHHhcCCCEEEe
Q 010948 247 RAFADAGADVLFI 259 (497)
Q Consensus 247 kAY~eAGAD~IfI 259 (497)
..+..|||++|-+
T Consensus 257 ~E~i~aGA~~vQv 269 (310)
T COG0167 257 LEFILAGASAVQV 269 (310)
T ss_pred HHHHHcCCchhee
Confidence 4566799998765
No 427
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=84.28 E-value=24 Score=31.73 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHH-
Q 010948 165 MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESL- 243 (497)
Q Consensus 165 ~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaI- 243 (497)
....+.++.+.+.|+..|+++.... +..+...... +.++.+... .+..+++...+... .+.+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~-----~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~ 74 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSS-----DPEEAETDDK----EVLKEVAAE---TDLPLGVQLAINDA-----AAAVD 74 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEE-----CcccCCCccc----cHHHHHHhh---cCCcEEEEEccCCc-----hhhhh
Confidence 3556677888889999999987541 1111111100 112222222 23345555433221 1112
Q ss_pred HHHHHHHhcCCCEEEeccCC------CHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 010948 244 RRSRAFADAGADVLFIDALA------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIeg~~------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
..++...++|+|.|.++.-. ..+.++.+.+.++..|..+-+... .......+.++|+..+.+.+.
T Consensus 75 ~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~----~~~~~~~~~~~g~d~i~~~~~ 145 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPT----GELAAAAAEEAGVDEVGLGNG 145 (200)
T ss_pred HHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCC----CccchhhHHHcCCCEEEEcCC
Confidence 22678889999999998764 344566666665444444332211 111222278899998887543
No 428
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=84.18 E-value=6.9 Score=41.51 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=55.8
Q ss_pred CCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHH
Q 010948 87 LPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMN 166 (497)
Q Consensus 87 ~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~ 166 (497)
-+.|+++=|+.+.-.|+.+.++|+++|++|+.+=- .=|.+.-|++-+.+....+ .-++||++|. |.-+...
T Consensus 224 ~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr-----~~d~~~~~~~~L~~i~~~~--~~~~~i~~dg--Gir~g~D 294 (356)
T PF01070_consen 224 WKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGR-----QLDWGPPTIDALPEIRAAV--GDDIPIIADG--GIRRGLD 294 (356)
T ss_dssp CSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGT-----SSTTS-BHHHHHHHHHHHH--TTSSEEEEES--S--SHHH
T ss_pred cCCceEEEecccHHHHHHHHhcCCCEEEecCCCcc-----cCccccccccccHHHHhhh--cCCeeEEEeC--CCCCHHH
Confidence 35789999999999999999999999999976632 1355555555555444433 2469999992 2223334
Q ss_pred HHHHHHHHHHhCccEEEecC
Q 010948 167 VKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IED 186 (497)
+. |. ...||.+|-|--
T Consensus 295 v~---ka-laLGA~~v~igr 310 (356)
T PF01070_consen 295 VA---KA-LALGADAVGIGR 310 (356)
T ss_dssp HH---HH-HHTT-SEEEESH
T ss_pred HH---HH-HHcCCCeEEEcc
Confidence 44 33 458999998843
No 429
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=84.12 E-value=9.6 Score=38.04 Aligned_cols=120 Identities=23% Similarity=0.328 Sum_probs=78.3
Q ss_pred cceEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 010948 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (497)
Q Consensus 151 iPVIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA 229 (497)
+||+. + +++.+...++.+++.|+..|-|-=.. ....+-|+++++.. ++.+|=|
T Consensus 16 I~Vlr------~~~~e~a~~~a~Ali~gGi~~IEITl~s----------------p~a~e~I~~l~~~~----p~~lIGA 69 (211)
T COG0800 16 VPVIR------GDDVEEALPLAKALIEGGIPAIEITLRT----------------PAALEAIRALAKEF----PEALIGA 69 (211)
T ss_pred eEEEE------eCCHHHHHHHHHHHHHcCCCeEEEecCC----------------CCHHHHHHHHHHhC----cccEEcc
Confidence 77775 3 57888999999999999999885432 12345566665553 3666666
Q ss_pred eccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCC-CCCCCHHHHHhcCCCEEe
Q 010948 230 RTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGK-TPILNPLELEELGFKLVA 308 (497)
Q Consensus 230 RTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~-tP~lt~~eL~elGv~~Vs 308 (497)
=|=-.. +.+.++.+|||+.|+=|+++ .++.+.|.... +|.+ ||. || --.....++|++.+-
T Consensus 70 GTVL~~--------~q~~~a~~aGa~fiVsP~~~--~ev~~~a~~~~-ip~~------PG~~Tp-tEi~~Ale~G~~~lK 131 (211)
T COG0800 70 GTVLNP--------EQARQAIAAGAQFIVSPGLN--PEVAKAANRYG-IPYI------PGVATP-TEIMAALELGASALK 131 (211)
T ss_pred ccccCH--------HHHHHHHHcCCCEEECCCCC--HHHHHHHHhCC-Cccc------CCCCCH-HHHHHHHHcChhhee
Confidence 664322 55677788999999999986 46666676543 4543 231 22 123455678988875
Q ss_pred c-cchHH
Q 010948 309 Y-PLSLI 314 (497)
Q Consensus 309 y-p~~ll 314 (497)
+ |...+
T Consensus 132 ~FPa~~~ 138 (211)
T COG0800 132 FFPAEVV 138 (211)
T ss_pred ecCcccc
Confidence 5 55544
No 430
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.11 E-value=17 Score=35.88 Aligned_cols=124 Identities=19% Similarity=0.306 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+++++...++.+.+.|+..|-|-=.. .+..+-|+.+++. . ++..|=|=|=-.
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~t----------------p~a~~~I~~l~~~---~-~~~~vGAGTVl~-------- 65 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRT----------------PAALDAIRAVAAE---V-EEAIVGAGTILN-------- 65 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC----------------ccHHHHHHHHHHH---C-CCCEEeeEeCcC--------
Confidence 56788999999999999988775432 1223344433322 2 466666665332
Q ss_pred HHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCH---HHHHhcCCCEEec-cchHHH--H
Q 010948 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP---LELEELGFKLVAY-PLSLIG--V 316 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~---~eL~elGv~~Vsy-p~~ll~--a 316 (497)
.+.++...+|||+-++-|++. .++.+.+++.. +|.+ || .+|+ .+..++|++.|-+ |...+. .
T Consensus 66 ~e~a~~ai~aGA~FivSP~~~--~~vi~~a~~~~-i~~i------PG---~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~ 133 (201)
T PRK06015 66 AKQFEDAAKAGSRFIVSPGTT--QELLAAANDSD-VPLL------PG---AATPSEVMALREEGYTVLKFFPAEQAGGAA 133 (201)
T ss_pred HHHHHHHHHcCCCEEECCCCC--HHHHHHHHHcC-CCEe------CC---CCCHHHHHHHHHCCCCEEEECCchhhCCHH
Confidence 356788889999999998865 46666676643 4432 23 2344 4556789998855 766663 4
Q ss_pred HHHHHHHHHH
Q 010948 317 SVRAMQDALT 326 (497)
Q Consensus 317 a~~Am~~al~ 326 (497)
-+++++.-+-
T Consensus 134 yikal~~plp 143 (201)
T PRK06015 134 FLKALSSPLA 143 (201)
T ss_pred HHHHHHhhCC
Confidence 4555554433
No 431
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=84.07 E-value=29 Score=37.82 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=79.0
Q ss_pred HHHHHhhcCcceEeeCCCC-CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH-HH
Q 010948 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-AR 218 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtG-YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~-Ar 218 (497)
+|++....+-||+.=+=-- -| ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..+++ +.
T Consensus 134 ~R~llgv~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IK-DDE~-------l~~q~~~p~~eRv~~~~~a~~~a~ 205 (406)
T cd08207 134 TRRLTGVEDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIK-DDEL-------LANPPYSPLDERVRAVMRVINDHA 205 (406)
T ss_pred HHHHhCCCCCceEEEecccccCCCHHHHHHHHHHHHhCCCCccc-cccc-------CCCCCCCcHHHHHHHHHHHHHHHH
Confidence 6667777789998766554 35 578889999999999998876 2322 223445566654444444433 23
Q ss_pred HhcCCC--eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCC-HHHHHHHHHhCCCCCc
Q 010948 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEISPLVPK 280 (497)
Q Consensus 219 ~~~g~d--fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s-~eei~~i~~~v~~vP~ 280 (497)
++.|.. +.+|- | .+.+|.++|++...++|+.++++.-... ..-++.+.+. +.+|+
T Consensus 206 ~eTG~~~~y~~Ni-T-----~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~-~~l~I 263 (406)
T cd08207 206 QRTGRKVMYAFNI-T-----DDIDEMRRNHDLVVEAGGTCVMVSLNSVGLSGLAALRRH-SQLPI 263 (406)
T ss_pred HhhCCcceEEEec-C-----CCHHHHHHHHHHHHHhCCCeEEEeccccchHHHHHHHhc-CCceE
Confidence 344432 22221 2 2469999999999999999999865432 4556666664 33444
No 432
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=84.05 E-value=12 Score=38.63 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHH
Q 010948 162 GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (497)
Q Consensus 162 G~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~lde 241 (497)
|++..+.+.+++ +.|...+||--+ . -+.++-+++|++++++. |+++.| |.|+......++
T Consensus 110 ~~~~~~~~~~~~--~~Gf~~~KiKvG-------~------~~~~~d~~~v~~vr~~~---g~~~~l--~vDaN~~w~~~~ 169 (307)
T TIGR01927 110 GDPALLLLRSAK--AEGFRTFKWKVG-------V------GELAREGMLVNLLLEAL---PDKAEL--RLDANGGLSPDE 169 (307)
T ss_pred CCHHHHHHHHHH--hCCCCEEEEEeC-------C------CChHHHHHHHHHHHHHc---CCCCeE--EEeCCCCCCHHH
Confidence 455544444443 679999998321 1 12345578888887663 445554 779988888999
Q ss_pred HHHHHHHHHh-cCCCEEEeccC-CCHHHHHHHHHhCCCCCccc
Q 010948 242 SLRRSRAFAD-AGADVLFIDAL-ASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 242 aIeRAkAY~e-AGAD~IfIeg~-~s~eei~~i~~~v~~vP~~~ 282 (497)
|++-++++.+ .|-+.-|+|-+ +..+.++++.+..+ +|+.+
T Consensus 170 A~~~~~~l~~~~~~~i~~iEqP~~~~~~~~~l~~~~~-~Pia~ 211 (307)
T TIGR01927 170 AQQFLKALDPNLRGRIAFLEEPLPDADEMSAFSEATG-TAIAL 211 (307)
T ss_pred HHHHHHhcccccCCCceEEeCCCCCHHHHHHHHHhCC-CCEEe
Confidence 9999999985 66677888765 34478888888765 56543
No 433
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=83.94 E-value=49 Score=35.28 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=81.9
Q ss_pred HHHHHHHHhCCcEEEec----chhhhhhh----cccCCCCCCCHHH----HHHHHHHHHhhc--CcceEeeC--------
Q 010948 100 LSAKLVEKSGFSFCFTS----GFSISAAR----LALPDTGFISYGE----MVDQGQLITQAV--SIPVIGDG-------- 157 (497)
Q Consensus 100 lSAriae~aGfdAI~vS----G~avSas~----lG~PD~g~ltldE----ml~~~r~I~ra~--~iPVIaD~-------- 157 (497)
-.|+.++++|||+|-+- |+-++-.. -=.-|.-.=+++. +++.++.|++++ +.||.+=+
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~ 233 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD 233 (382)
T ss_pred HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence 46788999999999664 33332110 0112311124543 344555666655 35665411
Q ss_pred ---------CCCCC--CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCcc-ccCH---HHHHHHHHHHHHHHHhcC
Q 010948 158 ---------DNGYG--NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK-VVSR---EEAVMRIKAAVDARKESG 222 (497)
Q Consensus 158 ---------DtGYG--~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~-lvp~---ee~~~KIrAAv~Ar~~~g 222 (497)
|...+ +.+...+.+++++++|++-|++-..... .+ +..... ..+. ..++++|+.++ +
T Consensus 234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~-~~-~~~~~~~~~~~~~~~~~~~~ik~~~------~ 305 (382)
T cd02931 234 LRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYD-AW-YWNHPPMYQKKGMYLPYCKALKEVV------D 305 (382)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCc-cc-ccccCCccCCcchhHHHHHHHHHHC------C
Confidence 11122 3466778899999999999999655310 00 000000 1111 12344444332 3
Q ss_pred CCeEEEEeccchhcccHHHHHHHHHHHHh-cCCCEEEec--cCCCHHHHHHHHH
Q 010948 223 SDIVIVARTDSRQALSLEESLRRSRAFAD-AGADVLFID--ALASKEEMKAFCE 273 (497)
Q Consensus 223 ~dfvIiARTDA~~~~~ldeaIeRAkAY~e-AGAD~IfIe--g~~s~eei~~i~~ 273 (497)
.+++.+++-... +.+....+ -+||+|.+- .+.+++..+++.+
T Consensus 306 ~pvi~~G~i~~~---------~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 306 VPVIMAGRMEDP---------ELASEAINEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred CCEEEeCCCCCH---------HHHHHHHHcCCCCeeeechHhHhCccHHHHHHc
Confidence 567777775431 33444444 449999873 3455666666654
No 434
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.93 E-value=40 Score=33.38 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=79.7
Q ss_pred HHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcC
Q 010948 143 QLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (497)
Q Consensus 143 r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g 222 (497)
..+.+.-=+||+-. -+.+.+.+.++.+.+.|+..|-|-=.. .+..+-|+.+++. .
T Consensus 10 ~~l~~~~~iaV~r~-----~~~~~a~~i~~al~~~Gi~~iEitl~~----------------~~~~~~I~~l~~~----~ 64 (212)
T PRK05718 10 EILRAGPVVPVIVI-----NKLEDAVPLAKALVAGGLPVLEVTLRT----------------PAALEAIRLIAKE----V 64 (212)
T ss_pred HHHHHCCEEEEEEc-----CCHHHHHHHHHHHHHcCCCEEEEecCC----------------ccHHHHHHHHHHH----C
Confidence 34433333777653 246788999999999999988774211 1233444444432 2
Q ss_pred CCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhc
Q 010948 223 SDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL 302 (497)
Q Consensus 223 ~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~el 302 (497)
++..|-|=|--. .+.++...+|||+.++.++... ++.+.|.+.. +|.+ .+ -.||. ...+..++
T Consensus 65 p~~~IGAGTVl~--------~~~a~~a~~aGA~FivsP~~~~--~vi~~a~~~~-i~~i----PG-~~Tpt-Ei~~a~~~ 127 (212)
T PRK05718 65 PEALIGAGTVLN--------PEQLAQAIEAGAQFIVSPGLTP--PLLKAAQEGP-IPLI----PG-VSTPS-ELMLGMEL 127 (212)
T ss_pred CCCEEEEeeccC--------HHHHHHHHHcCCCEEECCCCCH--HHHHHHHHcC-CCEe----CC-CCCHH-HHHHHHHC
Confidence 577777766432 1668888999999999998764 5555565543 4432 11 12331 25667789
Q ss_pred CCCEEec-cchHH
Q 010948 303 GFKLVAY-PLSLI 314 (497)
Q Consensus 303 Gv~~Vsy-p~~ll 314 (497)
|++.|-+ |...+
T Consensus 128 Ga~~vKlFPa~~~ 140 (212)
T PRK05718 128 GLRTFKFFPAEAS 140 (212)
T ss_pred CCCEEEEccchhc
Confidence 9998766 54433
No 435
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=83.76 E-value=14 Score=40.32 Aligned_cols=231 Identities=18% Similarity=0.221 Sum_probs=121.6
Q ss_pred HHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCC--CCCC-H-HHHHHHHHHHHHhC
Q 010948 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-A-MNVKRTVKGYIKAG 178 (497)
Q Consensus 103 riae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~Dt--GYG~-~-~~V~rtVk~l~~AG 178 (497)
..+.+.||-.+=+-|.+.-=+.+=+ ...=+| |++...+.....+.+-...=..+ ||-. + .-|.+-|++.++-|
T Consensus 35 e~lD~~G~~slE~WGGATFDaciRf--LnEDPW-eRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nG 111 (472)
T COG5016 35 EALDKVGYWSLEVWGGATFDACIRF--LNEDPW-ERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENG 111 (472)
T ss_pred HHHHhcCeeEEEecCCccHHHHHHH--hcCCHH-HHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcC
Confidence 4566778876666543321111111 000122 44444444444444444455555 6643 3 45667789999999
Q ss_pred ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccc--hhcccHHHHHHHHHHHHhcCCCE
Q 010948 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS--RQALSLEESLRRSRAFADAGADV 256 (497)
Q Consensus 179 aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA--~~~~~ldeaIeRAkAY~eAGAD~ 256 (497)
.+-+.|=|-.. + +..++.+.++.++.|. -+++-+-- -..+.++-=++-++.++++|+|.
T Consensus 112 idvfRiFDAlN-------------D----~RNl~~ai~a~kk~G~--h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DS 172 (472)
T COG5016 112 IDVFRIFDALN-------------D----VRNLKTAIKAAKKHGA--HVQGTISYTTSPVHTLEYYVELAKELLEMGVDS 172 (472)
T ss_pred CcEEEechhcc-------------c----hhHHHHHHHHHHhcCc--eeEEEEEeccCCcccHHHHHHHHHHHHHcCCCE
Confidence 99999999652 2 3345555555555443 23322211 12567788889999999999999
Q ss_pred EEec---cCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCCCH---HHHHhcCCCEEeccchHHH--HHHHHHHHHHHH
Q 010948 257 LFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLIG--VSVRAMQDALTA 327 (497)
Q Consensus 257 IfIe---g~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~lt~---~eL~elGv~~Vsyp~~ll~--aa~~Am~~al~~ 327 (497)
|.|- |+-++.++.++++.+.. +|+++++=.. .|..++. -.--++|+.++=...+.+. .+.-+.+....+
T Consensus 173 IciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH--~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~a 250 (472)
T COG5016 173 ICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTH--ATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAA 250 (472)
T ss_pred EEeecccccCChHHHHHHHHHHHHhcCCeeEEecc--cccchHHHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHH
Confidence 9985 45566666665544321 3455554322 2333433 2234567776644333222 222333344444
Q ss_pred HHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhc
Q 010948 328 IKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYA 362 (497)
Q Consensus 328 i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e~ry~ 362 (497)
|++...+ .....+.+.++. +.+.+..++|.
T Consensus 251 L~gt~yD---tgld~~~l~~~~--~yf~~vrkkY~ 280 (472)
T COG5016 251 LRGTGYD---TGLDLELLEEIA--EYFREVRKKYK 280 (472)
T ss_pred hcCCCCC---ccccHHHHHHHH--HHHHHHHHHHh
Confidence 5542211 122333433332 34567788884
No 436
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=83.75 E-value=5.1 Score=42.87 Aligned_cols=84 Identities=18% Similarity=0.140 Sum_probs=55.9
Q ss_pred CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHH
Q 010948 88 PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNV 167 (497)
Q Consensus 88 ~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V 167 (497)
+.|+++=|+-+.-.|+.+.++|+++|.+|+.+- ...|...-|++-+.+..+.+. ..+||++|. |.-+...+
T Consensus 224 ~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGG-----rqld~~~~t~~~L~ei~~av~--~~~~vi~dG--GIr~G~Dv 294 (367)
T PLN02493 224 KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA-----RQLDYVPATISALEEVVKATQ--GRIPVFLDG--GVRRGTDV 294 (367)
T ss_pred CCCEEeecCCCHHHHHHHHHcCCCEEEECCCCC-----CCCCCchhHHHHHHHHHHHhC--CCCeEEEeC--CcCcHHHH
Confidence 568999999999999999999999999997763 234544333333333322221 249999883 33333344
Q ss_pred HHHHHHHHHhCccEEEe
Q 010948 168 KRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 168 ~rtVk~l~~AGaAGI~I 184 (497)
. |.+ ..||.+|.|
T Consensus 295 ~---KAL-ALGA~aV~i 307 (367)
T PLN02493 295 F---KAL-ALGASGIFI 307 (367)
T ss_pred H---HHH-HcCCCEEEE
Confidence 4 333 469999988
No 437
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=83.75 E-value=4.4 Score=40.80 Aligned_cols=198 Identities=21% Similarity=0.218 Sum_probs=106.2
Q ss_pred HHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEec-chh--hhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe
Q 010948 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFS--ISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (497)
Q Consensus 79 ~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vS-G~a--vSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa 155 (497)
.-|.++|+.| ++..+-.+-.|+++|++|.=++... ... +- ..|- .-.++- ...++.|.+++++||++
T Consensus 14 ~GLAQmLkGG---vImdVv~~eQA~iAE~aGACaVmalervPadiR--~~Gg--V~RMsD---P~mIKei~~aVsiPVMA 83 (296)
T KOG1606|consen 14 VGLAQMLKGG---VIMDVVNAEQARIAEEAGACAVMALERVPADIR--AQGG--VARMSD---PRMIKEIKNAVSIPVMA 83 (296)
T ss_pred HHHHHHhcCC---eEEEecCHHHHHHHHhcCcceEeeeccCCHhHH--hcCC--eeecCC---HHHHHHHHHhccchhhh
Confidence 3588888765 3457778999999999998777765 211 11 1110 011222 23568888999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEE-------------EecCCC--CCCCCCCCCCccccCHHHHHHHHHHHHHHHHh
Q 010948 156 DGDNGYGNAMNVKRTVKGYIKAGFAGI-------------ILEDQV--SPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (497)
Q Consensus 156 D~DtGYG~~~~V~rtVk~l~~AGaAGI-------------~IEDq~--~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~ 220 (497)
-.--|+--..+ -++..|++=| |||-.. .|=.||-. +..|++.||+.-..
T Consensus 84 k~RiGHFVEAQ------IlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~r------dlGEALRRI~EGAA---- 147 (296)
T KOG1606|consen 84 KVRIGHFVEAQ------ILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCR------DLGEALRRIREGAA---- 147 (296)
T ss_pred hhhhhhhhHHH------HHHHhccCccchhhhcccccccchhhhhcCcCceeeccc------cHHHHHHHHhhchh----
Confidence 88888432222 2334455433 233222 15567643 34567777653211
Q ss_pred cCCCeEEEEeccchhc-ccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhC-------------CCCCccceeee
Q 010948 221 SGSDIVIVARTDSRQA-LSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEIS-------------PLVPKMANMLE 286 (497)
Q Consensus 221 ~g~dfvIiARTDA~~~-~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v-------------~~vP~~~N~l~ 286 (497)
+-||...+. -++.|+++-.+..... .=.+.. .+.+|+.++++++ ..+|+ +|.-.
T Consensus 148 -------MIRtkGeagTG~v~EaVkhvr~i~ge---ir~~~~-m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPV-V~FAa 215 (296)
T KOG1606|consen 148 -------MIRTKGEAGTGDVSEAVKHVRSINGE---IRVLKN-MDDDEVFTFAKEIAAPYDLVKQTKQLGRLPV-VNFAA 215 (296)
T ss_pred -------hheeccccCCCcHHHHHHHHHHHHHH---HHHHHc-CCHHHHHHHHHHhcCcHHHHHHHHHcCCCce-EEecc
Confidence 224444322 2344544433322210 000011 2445666665543 22443 56655
Q ss_pred cCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 010948 287 GGGKTPILNPLELEELGFKLVAYPLSLIG 315 (497)
Q Consensus 287 ~~g~tP~lt~~eL~elGv~~Vsyp~~ll~ 315 (497)
++-.|| -+..=+.+||..-|..|+..|.
T Consensus 216 GGvaTP-ADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 216 GGVATP-ADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred cCcCCh-hHHHHHHHcCCCeEEecccccc
Confidence 543444 3456678999999988776543
No 438
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=83.68 E-value=15 Score=40.95 Aligned_cols=110 Identities=16% Similarity=0.088 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhh---cCcc-eEeeCCCCC-CCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHH
Q 010948 133 ISYGEMVDQGQLITQA---VSIP-VIGDGDNGY-GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (497)
Q Consensus 133 ltldEml~~~r~I~ra---~~iP-VIaD~DtGY-G~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~ 207 (497)
.+.+|+++.+....+. .+.. +.+.+|+++ -+++-+.+.++.++++||..|.|-|.+ | +..++++
T Consensus 202 ~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTv-----G------~~tP~~v 270 (503)
T PLN03228 202 KTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTV-----G------INMPHEF 270 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEecCC-----C------CCCHHHH
Confidence 5678888776665443 2443 778887764 467788999999999999999999986 3 3345566
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEE
Q 010948 208 VMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (497)
Q Consensus 208 ~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~If 258 (497)
.+.|+++++.-... ++..|-..+ -+++--|+.-+.+..+|||+.|=
T Consensus 271 ~~lV~~l~~~~~~~-~~i~I~~H~----HND~GlAvANslaAi~aGa~~Vd 316 (503)
T PLN03228 271 GELVTYVKANTPGI-DDIVFSVHC----HNDLGLATANTIAGICAGARQVE 316 (503)
T ss_pred HHHHHHHHHHhccc-cCceeEecc----cCCcChHHHHHHHHHHhCCCEEE
Confidence 67776666542210 122222221 12233455666677788888764
No 439
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=83.67 E-value=29 Score=34.32 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHH
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldea 242 (497)
+++++...++.+.+.|+..+-|-=.. +...+-|+.+++. .+++.|-|=|=-.
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t----------------~~a~~~i~~l~~~----~~~~~vGAGTVl~-------- 69 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT----------------PVALDAIRLLRKE----VPDALIGAGTVLN-------- 69 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC----------------ccHHHHHHHHHHH----CCCCEEEEEeCCC--------
Confidence 56788999999999999988774421 1233344444432 2577777776442
Q ss_pred HHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCH---HHHHhcCCCEEe-ccchHHH--H
Q 010948 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP---LELEELGFKLVA-YPLSLIG--V 316 (497)
Q Consensus 243 IeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~---~eL~elGv~~Vs-yp~~ll~--a 316 (497)
.+.++.+.+|||+.|+-|+.. .++.+.|++.. +|.+ || .+|+ ....++|++.|- ||...+. .
T Consensus 70 ~~~a~~a~~aGA~FivsP~~~--~~v~~~~~~~~-i~~i------PG---~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~ 137 (204)
T TIGR01182 70 PEQLRQAVDAGAQFIVSPGLT--PELAKHAQDHG-IPII------PG---VATPSEIMLALELGITALKLFPAEVSGGVK 137 (204)
T ss_pred HHHHHHHHHcCCCEEECCCCC--HHHHHHHHHcC-CcEE------CC---CCCHHHHHHHHHCCCCEEEECCchhcCCHH
Confidence 366888889999999988864 46666676643 4433 23 1344 455678999875 5766554 3
Q ss_pred HHHHHHHH
Q 010948 317 SVRAMQDA 324 (497)
Q Consensus 317 a~~Am~~a 324 (497)
-+++++.-
T Consensus 138 yikal~~p 145 (204)
T TIGR01182 138 MLKALAGP 145 (204)
T ss_pred HHHHHhcc
Confidence 44444443
No 440
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=83.65 E-value=6 Score=37.30 Aligned_cols=93 Identities=20% Similarity=0.335 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEee
Q 010948 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (497)
Q Consensus 77 ~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD 156 (497)
.....|+++.. +.++-..||+.-.++.+++.|+|.+.+|-.--+ .-.|+...+.++.+ +.+++...+||+|
T Consensus 84 ~~~~~r~~~~~-~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T---~sk~~~~~~g~~~l----~~~~~~~~~pv~A- 154 (180)
T PF02581_consen 84 PPAEARKLLGP-DKIIGASCHSLEEAREAEELGADYVFLGPVFPT---SSKPGAPPLGLDGL----REIARASPIPVYA- 154 (180)
T ss_dssp SHHHHHHHHTT-TSEEEEEESSHHHHHHHHHCTTSEEEEETSS-----SSSSS-TTCHHHHH----HHHHHHTSSCEEE-
T ss_pred chHHhhhhccc-ceEEEeecCcHHHHHHhhhcCCCEEEECCccCC---CCCccccccCHHHH----HHHHHhCCCCEEE-
Confidence 45567777754 467778999999999999999999999954322 24666666666653 4556666799998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 157 GDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 157 ~DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
-|+. -..++..+.++|++||-+
T Consensus 155 ----lGGI--~~~~i~~l~~~Ga~gvAv 176 (180)
T PF02581_consen 155 ----LGGI--TPENIPELREAGADGVAV 176 (180)
T ss_dssp ----ESS----TTTHHHHHHTT-SEEEE
T ss_pred ----EcCC--CHHHHHHHHHcCCCEEEE
Confidence 4653 123345667899999854
No 441
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=83.63 E-value=22 Score=35.65 Aligned_cols=148 Identities=14% Similarity=0.038 Sum_probs=87.2
Q ss_pred HHHHHHHHhCC-Cceee-cccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEe
Q 010948 78 AKSLRQILELP-GVHQG-PACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (497)
Q Consensus 78 a~~Lr~ll~~~-~~iv~-p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIa 155 (497)
...++++.+.- -++.+ -|+.+.-.++.+..+|++.+.+++... .+. +.+.+.++.. ..-.+++.+
T Consensus 63 ~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~-------~~~-----~~~~~~~~~~-~~~~i~vsi 129 (258)
T PRK01033 63 YELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL-------EDP-----DLITEAAERF-GSQSVVVSI 129 (258)
T ss_pred HHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh-------cCH-----HHHHHHHHHh-CCCcEEEEE
Confidence 44566665532 34433 388888888888889999999885332 221 1111122222 112378888
Q ss_pred eCCCCC-------------CCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcC
Q 010948 156 DGDNGY-------------GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (497)
Q Consensus 156 D~DtGY-------------G~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g 222 (497)
|.-.|. .........++++.+.|+..|.+-|=. +.|...|. + -+++.++ +++
T Consensus 130 D~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~---~~G~~~G~---d-~~~i~~~---~~~----- 194 (258)
T PRK01033 130 DVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSID---RDGTMKGY---D-LELLKSF---RNA----- 194 (258)
T ss_pred EEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccC---CCCCcCCC---C-HHHHHHH---Hhh-----
Confidence 987662 112356778899999999999998643 45555553 2 2334443 332
Q ss_pred CCeEEEEeccchhcccHHHHHHHHHHHH-hcCCCEEEec
Q 010948 223 SDIVIVARTDSRQALSLEESLRRSRAFA-DAGADVLFID 260 (497)
Q Consensus 223 ~dfvIiARTDA~~~~~ldeaIeRAkAY~-eAGAD~IfIe 260 (497)
.++-|+|--+.... +.++.+. +.|||.+.+-
T Consensus 195 ~~ipvIasGGv~s~-------eD~~~l~~~~GvdgVivg 226 (258)
T PRK01033 195 LKIPLIALGGAGSL-------DDIVEAILNLGADAAAAG 226 (258)
T ss_pred CCCCEEEeCCCCCH-------HHHHHHHHHCCCCEEEEc
Confidence 35667777666543 3333333 5799999874
No 442
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.48 E-value=4.8 Score=41.64 Aligned_cols=64 Identities=17% Similarity=0.327 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCCEEEeccCCCHHHHHHHHHhC----CCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 010948 244 RRSRAFADAGADVLFIDALASKEEMKAFCEIS----PLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v----~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~l 313 (497)
+.+..+.++|||.|.++.+ +.++++++++.+ +.+| +...||-+ .-++.++.+.|+..|+.+...
T Consensus 207 eea~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~~~i~----leAsGGIt-~~ni~~ya~tGvD~Isvgsl~ 274 (288)
T PRK07428 207 EQVQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQNPRVK----IEASGNIT-LETIRAVAETGVDYISSSAPI 274 (288)
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcCCCeE----EEEECCCC-HHHHHHHHHcCCCEEEEchhh
Confidence 4444566899999999865 468888888753 3222 22333432 346789999999999987643
No 443
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=83.47 E-value=18 Score=35.04 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHH
Q 010948 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (497)
Q Consensus 166 ~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeR 245 (497)
.+.+.++.+.+.|++||.+-|= .-+..+++ .++++-|++-+-....+. .-
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~~---------------------g~~~~~k~----~~~~~~i~~~~~~nv~N~-----~s 52 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSNP---------------------GLLELLKE----LGPDLKIIADYSLNVFNS-----ES 52 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcCH---------------------HHHHHHHH----hCCCCcEEEecCccCCCH-----HH
Confidence 4677888999999999999772 12233332 267888888776654333 56
Q ss_pred HHHHHhcCCCEEEeccCCCHHHHHHHHHhCC
Q 010948 246 SRAFADAGADVLFIDALASKEEMKAFCEISP 276 (497)
Q Consensus 246 AkAY~eAGAD~IfIeg~~s~eei~~i~~~v~ 276 (497)
++.|.+.||+.+.+.---+.++++++++..+
T Consensus 53 ~~~~~~~G~~~i~ls~EL~~~ei~~i~~~~~ 83 (233)
T PF01136_consen 53 ARFLKELGASRITLSPELSLEEIKEIAENSP 83 (233)
T ss_pred HHHHHHcCCCEEEECccCCHHHHHHHHHhCC
Confidence 8899999999999976568899999999874
No 444
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=83.42 E-value=18 Score=40.02 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHh---hcCcceEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHH
Q 010948 132 FISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (497)
Q Consensus 132 ~ltldEml~~~r~I~r---a~~iPVIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~ 207 (497)
..|.+|+++.+....+ ....-+..++++++- ++..+.+.++.+.++||.-|+|=|.+ | ...++++
T Consensus 109 ~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTv-----G------~~~P~~~ 177 (494)
T TIGR00973 109 KMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTV-----G------YALPAEY 177 (494)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----C------CCCHHHH
Confidence 3678888887666544 335779999999876 56789999999999999999999986 3 2345677
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 208 VMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 208 ~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
.+.|+.+++.-... .+..|-..+ -+++--|+.-+.+..+|||+.|
T Consensus 178 ~~~i~~l~~~~~~~-~~v~l~~H~----HND~GlAvANalaAv~aGa~~v 222 (494)
T TIGR00973 178 GNLIKGLRENVPNI-DKAILSVHC----HNDLGLAVANSLAAVQNGARQV 222 (494)
T ss_pred HHHHHHHHHhhccc-cCceEEEEe----CCCCChHHHHHHHHHHhCCCEE
Confidence 77777776543210 012222211 1223345666777778888865
No 445
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.40 E-value=7.9 Score=43.01 Aligned_cols=125 Identities=20% Similarity=0.182 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHH
Q 010948 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRA 246 (497)
+.+..+.|.+.++..+-+-|.. |+.- -+++..++..+..--..+.+..| .++ ++|.- +.+++++|+
T Consensus 182 l~eAl~lM~e~~i~~LPVVD~~-----g~Lv--GIIT~~Dilk~~~~P~a~~d~~g-rL~-V~~av-----~~~~~~~ra 247 (502)
T PRK07107 182 LKEANDIIWDHKLNTLPIVDKN-----GNLV--YLVFRKDYDSHKENPLELLDSSK-RYV-VGAGI-----NTRDYAERV 247 (502)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-----CeEE--EEEEhHHHHhcccChhhhhhhcc-Cee-eeecc-----ChhhHHHHH
Confidence 5566778888888888776642 1211 15566665544221112222222 333 34422 235789999
Q ss_pred HHHHhcCCCEEEeccCCC-----HHHHHHHHHhCCCCCccceeeecCCCCCCCC---HHHHHhcCCCEEeccch
Q 010948 247 RAFADAGADVLFIDALAS-----KEEMKAFCEISPLVPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLS 312 (497)
Q Consensus 247 kAY~eAGAD~IfIeg~~s-----~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt---~~eL~elGv~~Vsyp~~ 312 (497)
+++.+||+|.|+|..-+. .+.++++.+.+|. .+.+..+ + -++ .++|.++|+..|..+++
T Consensus 248 ~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~---~~~V~aG-n---V~t~e~a~~li~aGAd~I~vg~g 314 (502)
T PRK07107 248 PALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGD---SVKVGAG-N---VVDREGFRYLAEAGADFVKVGIG 314 (502)
T ss_pred HHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCC---CceEEec-c---ccCHHHHHHHHHcCCCEEEECCC
Confidence 999999999999974322 4567777776652 1223332 1 234 46689999998866444
No 446
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=83.40 E-value=40 Score=37.04 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=81.6
Q ss_pred ceEeeCCC--CCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 010948 152 PVIGDGDN--GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (497)
Q Consensus 152 PVIaD~Dt--GYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA 229 (497)
.+|.|-+. +++.. ..+.++++.++|+..|+|-+.. .+.+++.+.++.+++..++.+..++|+.
T Consensus 294 y~it~~~~~~~~~~~--~~~~l~~~l~~Gv~~vqlR~k~-------------~~~~~~~~~a~~l~~~~~~~~~~liind 358 (502)
T PLN02898 294 YAVTDSGMNKKWGRS--TVDAVRAAIEGGATIVQLREKE-------------AETREFIEEAKACLAICRSYGVPLLIND 358 (502)
T ss_pred EEEECccccccccch--HHHHHHHHHHcCCCEEEEccCC-------------CCHHHHHHHHHHHHHHHHHhCCEEEEcC
Confidence 35555543 23332 4456788899999999998753 1334555555555555444456778877
Q ss_pred eccchh---cc-------c--HHH----------------HHHHHHHHHhcCCCEEEeccC-----------CCHHHHHH
Q 010948 230 RTDSRQ---AL-------S--LEE----------------SLRRSRAFADAGADVLFIDAL-----------ASKEEMKA 270 (497)
Q Consensus 230 RTDA~~---~~-------~--lde----------------aIeRAkAY~eAGAD~IfIeg~-----------~s~eei~~ 270 (497)
|.|-.. +. + ..+ .++.++...+.|||.|++-.+ ...+.+++
T Consensus 359 ~~~lA~~~~adGvHl~~~d~~~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~ 438 (502)
T PLN02898 359 RVDVALACDADGVHLGQSDMPVRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLRE 438 (502)
T ss_pred hHHHHHhcCCCEEEeChHhcCHHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHH
Confidence 766421 00 0 011 122334556789999875211 13567777
Q ss_pred HHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCC---EEeccchHH
Q 010948 271 FCEISPLVPKMANMLEGGGKTPILNPLELEELGFK---LVAYPLSLI 314 (497)
Q Consensus 271 i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~---~Vsyp~~ll 314 (497)
+++... +|.+ .-||-++ -+..++.+.|+. .|-....++
T Consensus 439 ~~~~~~-~Pv~----aiGGI~~-~~~~~~~~~G~~~~~gvav~~~i~ 479 (502)
T PLN02898 439 VCEASK-LPVV----AIGGISA-SNAASVMESGAPNLKGVAVVSALF 479 (502)
T ss_pred HHHcCC-CCEE----EECCCCH-HHHHHHHHcCCCcCceEEEEeHHh
Confidence 776543 5543 2234322 356788888887 777766654
No 447
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=83.04 E-value=52 Score=35.22 Aligned_cols=145 Identities=16% Similarity=0.072 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhC--ccEEEecCCCCCCCCCCCCCccccCHHHHHH
Q 010948 132 FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG--FAGIILEDQVSPKGCGHTRGRKVVSREEAVM 209 (497)
Q Consensus 132 ~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG--aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~ 209 (497)
.++.++....++.+......-+.+ .-|-..+-.+-++.+.++| ++.|.| |-. .||.. -+++
T Consensus 77 ~~~~e~~~~~v~~~~~~~~~~~~v----svG~~~~d~er~~~L~~a~~~~d~ivi-D~A----hGhs~--------~~i~ 139 (343)
T TIGR01305 77 HYSVDEWKAFATNSSPDCLQNVAV----SSGSSDNDLEKMTSILEAVPQLKFICL-DVA----NGYSE--------HFVE 139 (343)
T ss_pred CCCHHHHHHHHHhhcccccceEEE----EeccCHHHHHHHHHHHhcCCCCCEEEE-ECC----CCcHH--------HHHH
Confidence 477888777777655433333433 1233334455667777775 999999 543 36642 3444
Q ss_pred HHHHHHHHHHhcCCCeEEEEe-ccchhcccHHHHHHHHHHHHhcCCCEEEec------c---------CCCHHHHHHHHH
Q 010948 210 RIKAAVDARKESGSDIVIVAR-TDSRQALSLEESLRRSRAFADAGADVLFID------A---------LASKEEMKAFCE 273 (497)
Q Consensus 210 KIrAAv~Ar~~~g~dfvIiAR-TDA~~~~~ldeaIeRAkAY~eAGAD~IfIe------g---------~~s~eei~~i~~ 273 (497)
.|+.+++.. ++..|++= .-. -+.++.+.+||||+|.+- | .+....+..+++
T Consensus 140 ~ik~ir~~~----p~~~viaGNV~T---------~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~ 206 (343)
T TIGR01305 140 FVKLVREAF----PEHTIMAGNVVT---------GEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECAD 206 (343)
T ss_pred HHHHHHhhC----CCCeEEEecccC---------HHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHH
Confidence 555554442 45555544 322 256778889999999864 1 133445555555
Q ss_pred hCC--CCCccceeeecCCCCCCCCHHHHHhcCCCEEecc
Q 010948 274 ISP--LVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (497)
Q Consensus 274 ~v~--~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp 310 (497)
... .+| ++..+|-.-.-++-.--.+|...|..|
T Consensus 207 aa~~~~v~----VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 207 AAHGLKGH----IISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HhccCCCe----EEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 443 233 334444221123333334788888887
No 448
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=83.02 E-value=62 Score=33.54 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhhc-CcceEeeCCCCCCCHHHHHHHHHHHHHhC-ccEEEecCCCCCCCCCCCCCcccc--CHHHHH
Q 010948 133 ISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTRGRKVV--SREEAV 208 (497)
Q Consensus 133 ltldEml~~~r~I~ra~-~iPVIaD~DtGYG~~~~V~rtVk~l~~AG-aAGI~IEDq~~pKrCGH~~gk~lv--p~ee~~ 208 (497)
...+.++++.+.+.... +.|||+-+ .|+ +.....+.++.++++| |++|-|-=. |.|..+..-+ +.+...
T Consensus 74 ~g~~~~~~~i~~~~~~~~~~pvI~Si-~G~-~~~~~~~~a~~~~~~g~ad~iElN~S-----cPn~~~~~~~g~d~~~~~ 146 (310)
T PRK02506 74 LGFDYYLDYVLELQKKGPNKPHFLSV-VGL-SPEETHTILKKIQASDFNGLVELNLS-----CPNVPGKPQIAYDFETTE 146 (310)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEE-EeC-cHHHHHHHHHHHhhcCCCCEEEEECC-----CCCCCCccccccCHHHHH
Confidence 45677777777765544 59999887 554 4556668888888898 998877443 6665432222 345554
Q ss_pred HHHHHHHHH
Q 010948 209 MRIKAAVDA 217 (497)
Q Consensus 209 ~KIrAAv~A 217 (497)
+-+++++++
T Consensus 147 ~i~~~v~~~ 155 (310)
T PRK02506 147 QILEEVFTY 155 (310)
T ss_pred HHHHHHHHh
Confidence 555555544
No 449
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=82.88 E-value=23 Score=37.19 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=74.9
Q ss_pred HHHHHHHhhcCcceEeeCCCC-CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH-
Q 010948 140 DQGQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD- 216 (497)
Q Consensus 140 ~~~r~I~ra~~iPVIaD~DtG-YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~- 216 (497)
+-+|++....+.||+.=+=-- -| ++.+..+.+.++...|++=||= |.. ...++..|.+|-+..+..+++
T Consensus 3 ~G~R~~lgv~~RPL~~tiiKP~~Glsp~~~a~~~y~~a~GG~D~IKD-DE~-------l~~q~f~p~~eRv~~~~~a~~~ 74 (309)
T PF00016_consen 3 EGIRELLGVYDRPLLGTIIKPKLGLSPEELAELAYEFALGGVDFIKD-DEN-------LANQPFCPFEERVPACMEAVDR 74 (309)
T ss_dssp HHHHHHHTSSSS-EEEEEESSSSTS-HHHHHHHHHHHHHTTSSEEEE--TT--------SSBTTBEHHHHHHHHHHHHHH
T ss_pred eeeehhhhhccceEEccccCcceeecccchhhHHHhhhhcccceecc-ccc-------ccCcccccHhHhHHhhhhhhhc
Confidence 345677777788988655433 24 5788999999999999998873 432 123456677665555554443
Q ss_pred HHHhcCCCeEEEEe-ccchhcccHHHHHHHHHHHHhcCCCEEEecc----CCCHHHHHHHHHh
Q 010948 217 ARKESGSDIVIVAR-TDSRQALSLEESLRRSRAFADAGADVLFIDA----LASKEEMKAFCEI 274 (497)
Q Consensus 217 Ar~~~g~dfvIiAR-TDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg----~~s~eei~~i~~~ 274 (497)
+.++.|...+-.+- |. ...+|.++|++...++|++++++.- ......+++.++.
T Consensus 75 a~~eTG~~~ly~~NiT~----~~~~em~~ra~~a~~~G~~~vmv~~~~~G~~~~~~l~~~~~~ 133 (309)
T PF00016_consen 75 AEEETGEKKLYAANITA----DTPDEMIERAEYAKEAGANAVMVNVLTAGFSALQSLAEDARD 133 (309)
T ss_dssp HHHHHSS--EEEEEE-S----SSHHHHHHHHHHHHHHTGSEEEEEHHHHCHHHHHHHHHHHHH
T ss_pred cccccceecceeccccc----ccHHHHHHhhhhhhhhccchhhcccccccccccchhhhhhcc
Confidence 33345533222222 21 1368999999999999999998853 2333455555544
No 450
>PRK07534 methionine synthase I; Validated
Probab=82.78 E-value=12 Score=39.48 Aligned_cols=120 Identities=17% Similarity=0.284 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHH----HHHHhcCCCeEEEEeccchhc--
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV----DARKESGSDIVIVARTDSRQA-- 236 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv----~Ar~~~g~dfvIiARTDA~~~-- 236 (497)
+++.|.+.=+.|++|||.-|. -.... -.+-++. .--..++..+-+++++ +|+++.+.+.+|.+=--.+..
T Consensus 43 ~Pe~V~~vH~~Yl~AGAdiI~-TnTy~-as~~~l~--~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 43 HPDNITALHQGFVDAGSDIIL-TNSFG-GTAARLK--LHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred CHHHHHHHHHHHHHhcCCEEE-ecCcc-cCHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCcccc
Confidence 466677777889999987775 23211 0000100 0002233333344444 333322224445543322211
Q ss_pred -----ccHHH----HHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCC--CCCccceeee
Q 010948 237 -----LSLEE----SLRRSRAFADAGADVLFIDALASKEEMKAFCEISP--LVPKMANMLE 286 (497)
Q Consensus 237 -----~~lde----aIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~--~vP~~~N~l~ 286 (497)
...++ --++++++.++|+|.|++|-+++.+|++.+.+... ..|.++.+..
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~~Pv~vSft~ 179 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAGMPWCGTMSF 179 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 12232 33568889999999999999999999998886532 4687777654
No 451
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=82.77 E-value=35 Score=36.70 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=76.4
Q ss_pred HHHHHhhcCcceEeeCCCCC-C-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH-HH
Q 010948 142 GQLITQAVSIPVIGDGDNGY-G-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-AR 218 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtGY-G-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~-Ar 218 (497)
+|++....+-||+.=+=--- | ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..+++ +.
T Consensus 118 ~R~~lgv~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IK-DDE~-------l~~q~~~p~~eRv~~~~~a~~~a~ 189 (366)
T cd08148 118 IRKLLGVYGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIK-DDET-------LTDQPFCPLRDRITEVAAALDRVQ 189 (366)
T ss_pred HHHHhCCCCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccc-cccc-------cCCCCCCcHHHHHHHHHHHHHHHH
Confidence 56666667889987655543 5 578888999999999998665 2322 233455666655444444433 33
Q ss_pred HhcCCC--eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCC-HHHHHHHHHh
Q 010948 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEI 274 (497)
Q Consensus 219 ~~~g~d--fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s-~eei~~i~~~ 274 (497)
++.|.. +.+|- | .+.+|.++|++...++|+.++++..... ..-++.+.+.
T Consensus 190 ~eTG~~~~y~~Ni-T-----~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~ 242 (366)
T cd08148 190 EETGEKKLYAVNV-T-----AGTFEIIERAERALELGANMLMVDVLTAGFSALQALAED 242 (366)
T ss_pred HhhCCcceEEEEc-c-----CCHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHHh
Confidence 334432 22221 1 2348999999999999999999976543 4556666663
No 452
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=82.71 E-value=43 Score=33.50 Aligned_cols=184 Identities=17% Similarity=0.178 Sum_probs=102.8
Q ss_pred ChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHh
Q 010948 98 DALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (497)
Q Consensus 98 DalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~A 177 (497)
+.--++++++.|.|++++||.- |. . -++++++..++++++ .+|++.= + |++.++ .-
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~------~v---~-~~~~~~~~~ik~~~~--~~Pvilf-p---~~~~~i--------~~ 69 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSD------GV---S-STLDNVVRLIKRIRR--PVPVILF-P---SNPEAV--------SP 69 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCcc------ch---h-hhHHHHHHHHHHhcC--CCCEEEe-C---CCcccc--------Cc
Confidence 3445678888999999999732 22 2 478888888888776 7998862 2 333333 23
Q ss_pred CccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH--HHHh-cCCCeEEEE------e-ccchhcccHHHHHHHHH
Q 010948 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD--ARKE-SGSDIVIVA------R-TDSRQALSLEESLRRSR 247 (497)
Q Consensus 178 GaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~--Ar~~-~g~dfvIiA------R-TDA~~~~~ldeaIeRAk 247 (497)
||+++.+=-=.. ..+-.-++.. +++-+..... ...+ ....++|+. + |++......+++..-|.
T Consensus 70 ~aDa~l~~svln-----s~n~~~i~g~--~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~ 142 (219)
T cd02812 70 GADAYLFPSVLN-----SGDPYWIIGA--QAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYAL 142 (219)
T ss_pred CCCEEEEEeeec-----CCCchHHHHH--HHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHH
Confidence 577776532110 0000011111 1111111111 1110 111233321 1 22222345688888888
Q ss_pred HHHhcCCCEEEecc---CCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 010948 248 AFADAGADVLFIDA---LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 248 AY~eAGAD~IfIeg---~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~a 316 (497)
+.+..|--.|++|. ..+.+.++++.+.....|+. +.+ |-...-..+++.++|+..|+.|+.....
T Consensus 143 aae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~---vGG-GIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 143 AAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLI---VGG-GIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEE---EeC-CCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 88899988889984 23567888888876235543 233 3211134678888899999999977654
No 453
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.66 E-value=35 Score=35.84 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCcEEEec---chhhhhhhcccC------CCCCCCHHH----HHHHHHHHHhhcC------cceEeeC---
Q 010948 100 LSAKLVEKSGFSFCFTS---GFSISAARLALP------DTGFISYGE----MVDQGQLITQAVS------IPVIGDG--- 157 (497)
Q Consensus 100 lSAriae~aGfdAI~vS---G~avSas~lG~P------D~g~ltldE----ml~~~r~I~ra~~------iPVIaD~--- 157 (497)
-+|+.++++|||+|-+- |+-++ .+.-| |.-.=+++. +++.++.|+++++ .||-+-+
T Consensus 148 ~aA~~a~~aGfDgVeih~ahGyLl~--qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 148 EATRRAIEAGFDGVEIHGANGYLIQ--QFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHcCCCEEEEccccchHHH--HhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 47788899999999875 44443 22222 321113432 2334455555543 3444322
Q ss_pred ---CCCCCCHHHHHHHHHHHHHhCccEEEecCC
Q 010948 158 ---DNGYGNAMNVKRTVKGYIKAGFAGIILEDQ 187 (497)
Q Consensus 158 ---DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq 187 (497)
+.|. +.+...+.++.++++|++.|++-..
T Consensus 226 ~~~~~g~-~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 226 EPEEPGI-RMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred cccCCCC-CHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2222 3467788889999999999999653
No 454
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.65 E-value=9 Score=39.45 Aligned_cols=64 Identities=22% Similarity=0.408 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 010948 244 RRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ 312 (497)
+.++...++|||.|.++. -+.++++++++.++ .|.++ ..-||-+ .-+..++.+.|+..|+.+..
T Consensus 199 eea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~-~~i~i--~AiGGIt-~~ni~~~a~~Gvd~IAvg~l 262 (277)
T PRK08072 199 EQVREAVAAGADIIMFDN-RTPDEIREFVKLVP-SAIVT--EASGGIT-LENLPAYGGTGVDYISLGFL 262 (277)
T ss_pred HHHHHHHHcCCCEEEECC-CCHHHHHHHHHhcC-CCceE--EEECCCC-HHHHHHHHHcCCCEEEEChh
Confidence 334445689999999975 46789999998764 34442 2333432 24678999999999988763
No 455
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=82.63 E-value=7.5 Score=41.27 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeC
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~ 157 (497)
....|+++ ..+.++...||+.-.+..+.+.|+|.|.+|..--+.+ .|+...+.++ .++.+++...+|++|
T Consensus 230 ~~~aR~ll-g~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~t---Kp~~~~~Gle----~l~~~~~~~~iPv~A-- 299 (347)
T PRK02615 230 LAVARQLL-GPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPT---KPGKAPAGLE----YLKYAAKEAPIPWFA-- 299 (347)
T ss_pred HHHHHHhc-CCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCC---CCCCCCCCHH----HHHHHHHhCCCCEEE--
Confidence 34456654 3457889999999998888899999999995433222 3443344443 344455566799988
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEecCCCC
Q 010948 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVS 189 (497)
Q Consensus 158 DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~ 189 (497)
.|+.. ..++.++.++|++||-+-...+
T Consensus 300 ---iGGI~--~~ni~~l~~~Ga~gVAvisaI~ 326 (347)
T PRK02615 300 ---IGGID--KSNIPEVLQAGAKRVAVVRAIM 326 (347)
T ss_pred ---ECCCC--HHHHHHHHHcCCcEEEEeHHHh
Confidence 45431 2355677889999999988763
No 456
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=82.54 E-value=56 Score=34.43 Aligned_cols=156 Identities=14% Similarity=0.135 Sum_probs=87.6
Q ss_pred Cceee-cccC--ChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCC-----------------HHHHHHHHHHHHhh
Q 010948 89 GVHQG-PACF--DALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFIS-----------------YGEMVDQGQLITQA 148 (497)
Q Consensus 89 ~~iv~-p~ay--DalSAriae~aGfdAI~vSG~avSas~lG~PD~g~lt-----------------ldEml~~~r~I~ra 148 (497)
.|+.+ -|+. ++.......+.||-++.+.+...- ..-|+|---... .+.++...+.-...
T Consensus 13 NPl~lAaG~~~~~~~~~~~~~~~g~G~i~~ktvt~~-pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~~~l~~~~~~ 91 (310)
T COG0167 13 NPLGLAAGFDGKNGEELDALAALGFGAIVTKTVTPE-PQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFLEELKLAKYE 91 (310)
T ss_pred CCCeEcccCCccCHHHHHHHHhcCCceEEecCCCCc-CCCCCCCCeEEEecCcccHHHhcCCCchhHHHHHHHHHhhhhc
Confidence 35555 3444 444445555567777777665543 234544322211 23444443333222
Q ss_pred ---cCcceEeeCCCCCCCHHHHHHHHHHHHHhC-ccEEEecCCCCCCCCCCCCCc-cccCHHHHHHHHHHHHHHHHhcCC
Q 010948 149 ---VSIPVIGDGDNGYGNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTRGR-KVVSREEAVMRIKAAVDARKESGS 223 (497)
Q Consensus 149 ---~~iPVIaD~DtGYG~~~~V~rtVk~l~~AG-aAGI~IEDq~~pKrCGH~~gk-~lvp~ee~~~KIrAAv~Ar~~~g~ 223 (497)
.++++++-..++ ........+..+.++| |+++-+-= -|.|+.|. .+-.-.|.+++|..++.+..+ .
T Consensus 92 ~~~~~~~i~~~~~~~--~~~~~~d~~~~~~~~~~ad~ielNi-----ScPnt~g~~~l~~~~e~l~~l~~~vk~~~~--~ 162 (310)
T COG0167 92 GKPIGVNIGKNKGGP--SEEAWADYARLLEEAGDADAIELNI-----SCPNTPGGRALGQDPELLEKLLEAVKAATK--V 162 (310)
T ss_pred cCCcCcceEEecCCC--cHHHHHHHHHHHHhcCCCCEEEEEc-----cCCCCCChhhhccCHHHHHHHHHHHHhccc--C
Confidence 345676665544 3456777778888888 78876643 38887663 344123456666655554432 2
Q ss_pred CeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec
Q 010948 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (497)
Q Consensus 224 dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe 260 (497)
+. ..+- .. ..++..+-|++..++|||.|.+-
T Consensus 163 Pv--~vKl---~P-~~~di~~iA~~~~~~g~Dgl~~~ 193 (310)
T COG0167 163 PV--FVKL---AP-NITDIDEIAKAAEEAGADGLIAI 193 (310)
T ss_pred ce--EEEe---CC-CHHHHHHHHHHHHHcCCcEEEEE
Confidence 32 2231 11 45788888999999999998764
No 457
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=82.53 E-value=6.6 Score=41.72 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCEEEec---------cCCCHHHHHHHHHhCC-CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 010948 244 RRSRAFADAGADVLFID---------ALASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (497)
Q Consensus 244 eRAkAY~eAGAD~IfIe---------g~~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~l 313 (497)
+.|+...++|||.|.+- ++.+.+.+.++.+.+. .+|++ ..+|-.-..++-+.-.+|.+-|.++-.+
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi----~dGGIr~g~Di~kaLalGA~~V~iGr~~ 308 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPII----FDSGVRRGEHVFKALASGADAVAVGRPV 308 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEE----EECCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 66788889999999992 2334567777777663 24543 3345332334444555999999999887
Q ss_pred HHHH----HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHH
Q 010948 314 IGVS----VRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEE 358 (497)
Q Consensus 314 l~aa----~~Am~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e 358 (497)
+.+. ..++.+.++.|++. ++....++|+....++.
T Consensus 309 l~~la~~G~~gv~~~l~~l~~E----------l~~~m~l~G~~~i~el~ 347 (351)
T cd04737 309 LYGLALGGAQGVASVLEHLNKE----------LKIVMQLAGTRTIEDVK 347 (351)
T ss_pred HHHHhhchHHHHHHHHHHHHHH----------HHHHHHHHCCCCHHHhC
Confidence 7654 33445555555432 34455566666655543
No 458
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=82.53 E-value=9.1 Score=38.29 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=58.1
Q ss_pred HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH
Q 010948 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (497)
Q Consensus 171 Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~ 250 (497)
++.++++|+.++-+-|-..--..|+.+ ..+++.+|++..++.+..+.. .+ +++=-|.-- .+.+++.+-++.+.
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD-~~~~~~~e~~~~~~~I~~~~~---~P--v~~D~~~G~-g~~~~~~~~v~~~~ 94 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPD-GGLLTLDEVLAAVRRIARAVD---LP--VIADADTGY-GNALNVARTVRELE 94 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCC-CCcCCHHHHHHHHHHHHhhcc---CC--EEEEcCCCC-CCHHHHHHHHHHHH
Confidence 467778899999998865211225543 347899999999999887753 23 444333311 14467777788999
Q ss_pred hcCCCEEEecc
Q 010948 251 DAGADVLFIDA 261 (497)
Q Consensus 251 eAGAD~IfIeg 261 (497)
++||++|.||.
T Consensus 95 ~~G~~gv~iED 105 (243)
T cd00377 95 EAGAAGIHIED 105 (243)
T ss_pred HcCCEEEEEec
Confidence 99999999953
No 459
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=82.53 E-value=37 Score=35.87 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhC
Q 010948 239 LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEIS 275 (497)
Q Consensus 239 ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v 275 (497)
+-|++. |-.|.-+|||++++.++.+...++++.+.+
T Consensus 277 ~~E~~~-a~~~~~~ga~i~vm~hp~s~~~~~~~~~~l 312 (319)
T PRK04452 277 LWEAVT-ALTLLLAGADIFMMRHPESVKTLKEIIDTL 312 (319)
T ss_pred HHHHHH-HHHHHHhcCcEEEEeCHHHHHHHHHHHHHH
Confidence 345555 888999999999999999888888888764
No 460
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=82.39 E-value=58 Score=34.43 Aligned_cols=217 Identities=22% Similarity=0.245 Sum_probs=127.9
Q ss_pred HHHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEee
Q 010948 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (497)
Q Consensus 77 ~a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD 156 (497)
.-+.|.+.-++-+...+-++||.-++.++++.|.+++-++|.-+.. -.++ +.+++ ++.|||.-
T Consensus 77 ~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n-------------~pLL---~~~A~-~gkPvilS 139 (329)
T TIGR03569 77 DHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITN-------------APLL---KKIAR-FGKPVILS 139 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccC-------------HHHH---HHHHh-cCCcEEEE
Confidence 3455666666778889999999999999999999999999865421 1222 33333 58999875
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccE--E-EecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccc
Q 010948 157 GDNGYGNAMNVKRTVKGYIKAGFAG--I-ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS 233 (497)
Q Consensus 157 ~DtGYG~~~~V~rtVk~l~~AGaAG--I-~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA 233 (497)
+|..+...+.+.++.+.+.|... | .+. |... .+ .|.++ -.++++..-++.. ++ .++=.|.
T Consensus 140 --tGmatl~Ei~~Av~~i~~~G~~~~~i~llh-------C~s~--YP-~~~~~--~nL~~I~~Lk~~f--~~-pVG~SdH 202 (329)
T TIGR03569 140 --TGMATLEEIEAAVGVLRDAGTPDSNITLLH-------CTTE--YP-APFED--VNLNAMDTLKEAF--DL-PVGYSDH 202 (329)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCCcCcEEEEE-------ECCC--CC-CCccc--CCHHHHHHHHHHh--CC-CEEECCC
Confidence 77777789999999998888642 2 222 3211 11 12222 1344444344333 22 3333555
Q ss_pred hhcccHHHHHHHHHHHHhcCCCEEEecc-----C--------CCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHH
Q 010948 234 RQALSLEESLRRSRAFADAGADVLFIDA-----L--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELE 300 (497)
Q Consensus 234 ~~~~~ldeaIeRAkAY~eAGAD~IfIeg-----~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~ 300 (497)
.. + +.-+.+...+||++|=-+- + -+++|++++++.+.. .-.++..+.+ ..+..|..
T Consensus 203 t~--G----~~~~~aAvalGA~iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~---~~~~lG~~~k--~~~~~E~~ 271 (329)
T TIGR03569 203 TL--G----IEAPIAAVALGATVIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRN---VEKALGDGVK--RPTPSEQK 271 (329)
T ss_pred Cc--c----HHHHHHHHHcCCCEEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHH---HHHHcCCCCC--CcCHHHHH
Confidence 32 3 3567788899999554331 1 136888888876532 1223333223 34566666
Q ss_pred hcCC-CEEeccchHHHHHHHHHHHHHHHHHcCCC--------CCCCCCCCHHHHHHhcCcc
Q 010948 301 ELGF-KLVAYPLSLIGVSVRAMQDALTAIKGGRI--------PSPGSMPSFQEIKETLGFN 352 (497)
Q Consensus 301 elGv-~~Vsyp~~ll~aa~~Am~~al~~i~~g~~--------~~~~~~~~~~ei~~lvg~~ 352 (497)
..-+ +|-+|.. +.|+.|.. -.++..++..++.+++|-.
T Consensus 272 ~~~~~rrsl~a~--------------~di~~G~~lt~~~l~~~RP~~Gi~p~~~~~v~G~~ 318 (329)
T TIGR03569 272 NRDVARKSLVAA--------------KDIKKGEIFTEDNLTVKRPGNGISPMEYWEVIGKK 318 (329)
T ss_pred HHHhcceEEEEc--------------cCcCCCCEecHHheeeeCCCCCCCHhHHHHhcCce
Confidence 6655 5566532 33444421 1233346677887777743
No 461
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.28 E-value=47 Score=33.23 Aligned_cols=131 Identities=16% Similarity=0.197 Sum_probs=80.9
Q ss_pred HHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCC
Q 010948 144 LITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS 223 (497)
Q Consensus 144 ~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~ 223 (497)
.+.+.-=+||+.. -+++.+.+.++.+.+.|+..|-|-=.. +...+.|+..++...+-.+
T Consensus 11 ~l~~~~vi~Vvr~-----~~~~~a~~~~~al~~gGi~~iEiT~~t----------------p~a~~~i~~l~~~~~~~~p 69 (222)
T PRK07114 11 AMKATGMVPVFYH-----ADVEVAKKVIKACYDGGARVFEFTNRG----------------DFAHEVFAELVKYAAKELP 69 (222)
T ss_pred HHHhCCEEEEEEc-----CCHHHHHHHHHHHHHCCCCEEEEeCCC----------------CcHHHHHHHHHHHHHhhCC
Confidence 3433333777763 257788999999999999988775432 1123444444433221135
Q ss_pred CeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCH---HHHH
Q 010948 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP---LELE 300 (497)
Q Consensus 224 dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~---~eL~ 300 (497)
++.|=|=|=-. .+.+++..+|||+-++-|+.. .++.+.+++.. +|.+ || .+|+ .+..
T Consensus 70 ~~~vGaGTVl~--------~e~a~~a~~aGA~FiVsP~~~--~~v~~~~~~~~-i~~i------PG---~~TpsEi~~A~ 129 (222)
T PRK07114 70 GMILGVGSIVD--------AATAALYIQLGANFIVTPLFN--PDIAKVCNRRK-VPYS------PG---CGSLSEIGYAE 129 (222)
T ss_pred CeEEeeEeCcC--------HHHHHHHHHcCCCEEECCCCC--HHHHHHHHHcC-CCEe------CC---CCCHHHHHHHH
Confidence 77776666432 366788889999999998865 46666776543 4432 23 1344 5556
Q ss_pred hcCCCEEec-cchHHH
Q 010948 301 ELGFKLVAY-PLSLIG 315 (497)
Q Consensus 301 elGv~~Vsy-p~~ll~ 315 (497)
++|++.|-+ |...+.
T Consensus 130 ~~Ga~~vKlFPA~~~G 145 (222)
T PRK07114 130 ELGCEIVKLFPGSVYG 145 (222)
T ss_pred HCCCCEEEECcccccC
Confidence 789998855 654443
No 462
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=82.15 E-value=28 Score=38.54 Aligned_cols=150 Identities=20% Similarity=0.151 Sum_probs=90.7
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCC--CHHHHHHHHHHHHHhCc
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG--NAMNVKRTVKGYIKAGF 179 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG--~~~~V~rtVk~l~~AGa 179 (497)
|+.+.++|++.|=++..+.+ - .| .+.+++|+.....|-++ +++ ....+.++++.+..+++
T Consensus 29 a~~L~~~GV~~IEvG~p~~s-----~--------~d-~e~v~~i~~~~~~~~i~----al~r~~~~did~a~~al~~~~~ 90 (494)
T TIGR00973 29 ALALERLGVDIIEAGFPVSS-----P--------GD-FEAVQRIARTVKNPRVC----GLARCVEKDIDAAAEALKPAEK 90 (494)
T ss_pred HHHHHHcCCCEEEEECCCCC-----H--------HH-HHHHHHHHHhCCCCEEE----EEcCCCHHhHHHHHHhccccCC
Confidence 45677889999976533321 1 22 13345554433323222 233 34567777766777788
Q ss_pred cEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEe
Q 010948 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (497)
Q Consensus 180 AGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfI 259 (497)
..|+|--..++- |...+--.+.+|.++++..+++-.++.|..+.+-+- |+. ..+.+.+++-+++..++|||.|.+
T Consensus 91 ~~v~i~~~~S~~---h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E-d~~-r~d~~~l~~~~~~~~~~Ga~~i~l 165 (494)
T TIGR00973 91 FRIHTFIATSPI---HLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE-DAG-RTEIPFLARIVEAAINAGATTINI 165 (494)
T ss_pred CEEEEEEccCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC-CCC-CCCHHHHHHHHHHHHHcCCCEEEe
Confidence 999986655432 221111235788888888887776665543333322 332 235788899999999999999988
Q ss_pred c---cCCCHHHHHHHHHh
Q 010948 260 D---ALASKEEMKAFCEI 274 (497)
Q Consensus 260 e---g~~s~eei~~i~~~ 274 (497)
. |..+++++.++.+.
T Consensus 166 ~DTvG~~~P~~~~~~i~~ 183 (494)
T TIGR00973 166 PDTVGYALPAEYGNLIKG 183 (494)
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 6 34566777666654
No 463
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=82.04 E-value=6.8 Score=41.95 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=55.3
Q ss_pred HHHHHHhC-CCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHH----Hhhc---Cc
Q 010948 80 SLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLI----TQAV---SI 151 (497)
Q Consensus 80 ~Lr~ll~~-~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I----~ra~---~i 151 (497)
.+.++.+. +-++++-++.+.-.|+-+.++|+|+|..+..+.. .. .....-.+++-+.+..+... .+.+ .+
T Consensus 179 ~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~-~~-~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~v 256 (369)
T TIGR01304 179 NLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGAN-TT-RLVLGIEVPMATAIADVAAARRDYLDETGGRYV 256 (369)
T ss_pred HHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCc-cc-ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 45554443 3455545899999999888899999996622211 11 11111234544443333322 2233 39
Q ss_pred ceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 010948 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (497)
Q Consensus 152 PVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~I 184 (497)
|||+|. |..+...+.+ .+.+||++|.+
T Consensus 257 pVIAdG--GI~tg~di~k----AlAlGAdaV~i 283 (369)
T TIGR01304 257 HVIADG--GIETSGDLVK----AIACGADAVVL 283 (369)
T ss_pred eEEEeC--CCCCHHHHHH----HHHcCCCEeee
Confidence 999884 3444444443 34589999988
No 464
>PRK10200 putative racemase; Provisional
Probab=82.02 E-value=17 Score=36.07 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=61.0
Q ss_pred cCHHHHHHHHHHHHHHHHh-cCCCeEEEEeccc------hh----cccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHH
Q 010948 202 VSREEAVMRIKAAVDARKE-SGSDIVIVARTDS------RQ----ALSLEESLRRSRAFADAGADVLFIDALASKEEMKA 270 (497)
Q Consensus 202 vp~ee~~~KIrAAv~Ar~~-~g~dfvIiARTDA------~~----~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~ 270 (497)
....++..||.....++.+ ...+.++.--.+- .. ...++..++-++.++++|||+|++.|-+.-..+.+
T Consensus 13 ~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~ 92 (230)
T PRK10200 13 ESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADA 92 (230)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHH
Confidence 3455677777766666432 1233344333221 11 12345667778889999999999999754445666
Q ss_pred HHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEEec
Q 010948 271 FCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (497)
Q Consensus 271 i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsy 309 (497)
+.+.++ +| ++||++. +...+++.|.++|-.
T Consensus 93 l~~~~~-iP-ii~ii~~-------~~~~~~~~~~~~Vgl 122 (230)
T PRK10200 93 IESRCS-LP-FLHIADA-------TGRAITGAGMTRVAL 122 (230)
T ss_pred HHHhCC-CC-EeehHHH-------HHHHHHHcCCCeEEE
Confidence 666665 67 4677652 556777778887755
No 465
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=81.94 E-value=50 Score=40.49 Aligned_cols=191 Identities=20% Similarity=0.201 Sum_probs=106.0
Q ss_pred eEeeCCC--CCCC-HHHH-HHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCe-EE
Q 010948 153 VIGDGDN--GYGN-AMNV-KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VI 227 (497)
Q Consensus 153 VIaD~Dt--GYG~-~~~V-~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~df-vI 227 (497)
.+.=.-+ ||-+ +.|| ...+++..+.|++-+-|=|.. =..+.+..-|++++++ |.-. .-
T Consensus 609 ml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~l-------------N~~~n~~~~~~~~~~~----g~~~~~~ 671 (1143)
T TIGR01235 609 MLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSL-------------NWVENMRVGMDAVAEA----GKVVEAA 671 (1143)
T ss_pred eeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccC-------------cCHHHHHHHHHHHHHc----CCEEEEE
Confidence 4455555 5665 5664 455888899999999998864 1233444444444433 3211 11
Q ss_pred EEec----cc-hhcccHHHHHHHHHHHHhcCCCEEEec---cCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCC---C
Q 010948 228 VART----DS-RQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPIL---N 295 (497)
Q Consensus 228 iART----DA-~~~~~ldeaIeRAkAY~eAGAD~IfIe---g~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~l---t 295 (497)
+.-| |. ...+.++-.++-|+.+.++|||.|.+- |+-++.++.++++.+.. +..++.+=.. -+..+ +
T Consensus 672 i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~H--dt~Gla~an 749 (1143)
T TIGR01235 672 ICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTH--DTSGIAVAS 749 (1143)
T ss_pred EEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEEC--CCCCcHHHH
Confidence 1223 11 224567888899999999999999985 45566777776654321 1223332111 12233 2
Q ss_pred HHHHHhcCCCEEeccchHHHH--HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccccc
Q 010948 296 PLELEELGFKLVAYPLSLIGV--SVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRR 367 (497)
Q Consensus 296 ~~eL~elGv~~Vsyp~~ll~a--a~~Am~~al~~i~~g~~~~~~~~~~~~ei~~lvg~~~~~~~e~ry~~~~~~ 367 (497)
.-.-.++|++.|-.....+.- ...+++..+..|+..... ....++.+.++-.| |.+....|.+-+..
T Consensus 750 ~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~---tgidl~~l~~is~~--~~~vr~~y~~~~~~ 818 (1143)
T TIGR01235 750 MLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERD---PGLNVAWIRELSAY--WEAVRNLYAAFESD 818 (1143)
T ss_pred HHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCC---CCcCHHHHHHHHHH--HHHHHHHhhcCCCC
Confidence 344457899998776655422 233556666666653222 12344444443321 44455666554443
No 466
>PLN02826 dihydroorotate dehydrogenase
Probab=81.87 E-value=24 Score=38.37 Aligned_cols=149 Identities=9% Similarity=0.086 Sum_probs=80.6
Q ss_pred CcEEEec-chhhhhhhcccCCCC-CCCHHHHHHHHHHHHh------hcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccE
Q 010948 110 FSFCFTS-GFSISAARLALPDTG-FISYGEMVDQGQLITQ------AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 110 fdAI~vS-G~avSas~lG~PD~g-~ltldEml~~~r~I~r------a~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAG 181 (497)
+|++-+- |.-. .-|+.+.. .-.+.+++..++...+ ...+||++=+---. +..++...++.++++|++|
T Consensus 217 aDylelNiScPN---tpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl-~~~di~~ia~~a~~~G~dG 292 (409)
T PLN02826 217 ADYLVINVSSPN---TPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDL-SKEDLEDIAAVALALGIDG 292 (409)
T ss_pred CCEEEEECCCCC---CCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCC-CHHHHHHHHHHHHHcCCCE
Confidence 6666654 3221 12443322 1234566666655543 24689999552211 2335677778888999999
Q ss_pred EEecCCCC---------CC--CCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH
Q 010948 182 IILEDQVS---------PK--GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (497)
Q Consensus 182 I~IEDq~~---------pK--rCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~ 250 (497)
|.+-.... +. ..|-..|+++.+.. .+.|+.+.++ .+.++-|++=.--. .- +.+..+.
T Consensus 293 Ii~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~s--l~~v~~l~~~---~~~~ipIIgvGGI~---sg----~Da~e~i 360 (409)
T PLN02826 293 LIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLS--TEVLREMYRL---TRGKIPLVGCGGVS---SG----EDAYKKI 360 (409)
T ss_pred EEEEcccCcCccchhcccccccCCCcCCccccHHH--HHHHHHHHHH---hCCCCcEEEECCCC---CH----HHHHHHH
Confidence 98876431 11 12334567776653 3444444333 23456677654332 22 3455567
Q ss_pred hcCCCEEEeccC---CCHHHHHHHHHh
Q 010948 251 DAGADVLFIDAL---ASKEEMKAFCEI 274 (497)
Q Consensus 251 eAGAD~IfIeg~---~s~eei~~i~~~ 274 (497)
.|||++|.+-.- ..+..+.++.++
T Consensus 361 ~AGAs~VQv~Ta~~~~Gp~~i~~I~~e 387 (409)
T PLN02826 361 RAGASLVQLYTAFAYEGPALIPRIKAE 387 (409)
T ss_pred HhCCCeeeecHHHHhcCHHHHHHHHHH
Confidence 799999987421 223455555544
No 467
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=81.72 E-value=68 Score=33.15 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=69.0
Q ss_pred HHHHHHHHhCCC--ceeecccCCh--H-HH---HHHHHhCCcEEEec-chhhhhhhcccCCC------------CCCCHH
Q 010948 78 AKSLRQILELPG--VHQGPACFDA--L-SA---KLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYG 136 (497)
Q Consensus 78 a~~Lr~ll~~~~--~iv~p~ayDa--l-SA---riae~aGfdAI~vS-G~avSas~lG~PD~------------g~ltld 136 (497)
.++|.++.+.++ .+...++-|+ - |. +.+.++|.|++=++ -++ -.+.|+ ..+|++
T Consensus 5 ~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfS-----DPvADGP~Iq~A~~rAL~~g~t~~ 79 (265)
T COG0159 5 DQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFS-----DPVADGPTIQAAHLRALAAGVTLE 79 (265)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCC-----CcCccCHHHHHHHHHHHHCCCCHH
Confidence 456777776664 3443444442 2 22 33457899999877 221 122232 257889
Q ss_pred HHHHHHHHHHhh-cCcceEeeCCCCCCCH---HHHHHHHHHHHHhCccEEEecC
Q 010948 137 EMVDQGQLITQA-VSIPVIGDGDNGYGNA---MNVKRTVKGYIKAGFAGIILED 186 (497)
Q Consensus 137 Eml~~~r~I~ra-~~iPVIaD~DtGYG~~---~~V~rtVk~l~~AGaAGI~IED 186 (497)
+.++.++.+... ..+|++. .+|-|+ ..+.+-+++..++|++|+.+=|
T Consensus 80 ~~lel~~~~r~~~~~~Pivl---m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD 130 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVL---MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPD 130 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEE---EEeccHHHHhhHHHHHHHHHHcCCCEEEeCC
Confidence 999999999854 6789877 578887 2567778899999999999988
No 468
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=81.70 E-value=51 Score=31.69 Aligned_cols=149 Identities=19% Similarity=0.159 Sum_probs=82.3
Q ss_pred HHHHHHhhcCcceEeeCCCC-CCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 010948 141 QGQLITQAVSIPVIGDGDNG-YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (497)
Q Consensus 141 ~~r~I~ra~~iPVIaD~DtG-YG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~ 219 (497)
.++.|.+.+ ++++|...+ .+++ ....++.+.++||+.|.+---. | .+ .+.++.+..+
T Consensus 46 ~v~~ir~~~--~i~~D~k~~di~~~--~~~~~~~~~~~gad~vtvh~e~---------g------~~---~l~~~i~~~~ 103 (215)
T PRK13813 46 IIEELKRYA--PVIADLKVADIPNT--NRLICEAVFEAGAWGIIVHGFT---------G------RD---SLKAVVEAAA 103 (215)
T ss_pred HHHHHHhcC--CEEEEeeccccHHH--HHHHHHHHHhCCCCEEEEcCcC---------C------HH---HHHHHHHHHH
Confidence 334444433 677798887 5544 3334477888999988772211 0 11 2333333333
Q ss_pred hcCCCeEEEEeccch-hccc-HHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCC-CCH
Q 010948 220 ESGSDIVIVARTDSR-QALS-LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPI-LNP 296 (497)
Q Consensus 220 ~~g~dfvIiARTDA~-~~~~-ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~-lt~ 296 (497)
+.|....+..-.... .... .+..-.-++.-.+.|++...+.. ...+.++++.+..+. +..+ +. ||-.+. -++
T Consensus 104 ~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~-~~~~~i~~l~~~~~~-~~~i--vd-gGI~~~g~~~ 178 (215)
T PRK13813 104 ESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPA-TRPERVRYIRSRLGD-ELKI--IS-PGIGAQGGKA 178 (215)
T ss_pred hcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECC-CcchhHHHHHHhcCC-CcEE--Ee-CCcCCCCCCH
Confidence 345556555444321 1122 23333445556689999887654 334666666665542 2121 22 243332 148
Q ss_pred HHHHhcCCCEEeccchHHHH
Q 010948 297 LELEELGFKLVAYPLSLIGV 316 (497)
Q Consensus 297 ~eL~elGv~~Vsyp~~ll~a 316 (497)
.++.+.|.+.++.|..++.+
T Consensus 179 ~~~~~aGad~iV~Gr~I~~~ 198 (215)
T PRK13813 179 ADAIKAGADYVIVGRSIYNA 198 (215)
T ss_pred HHHHHcCCCEEEECcccCCC
Confidence 99999999999999877654
No 469
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=81.67 E-value=16 Score=37.67 Aligned_cols=132 Identities=21% Similarity=0.229 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCC-C--CCCCC------CCC-CccccCH
Q 010948 135 YGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-S--PKGCG------HTR-GRKVVSR 204 (497)
Q Consensus 135 ldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~-~--pKrCG------H~~-gk~lvp~ 204 (497)
+++.....+...+..-+|.+ -.||-+.+...+.++.+.++||+.+-| +. + |.-=| |.. -+.-++.
T Consensus 4 ~~~~F~~l~~~~~~a~i~yi---t~GdP~~e~s~e~i~~L~~~GaD~iEL--GvPfSDPvADGP~Iq~A~~rAL~~g~t~ 78 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYV---TAGDPDLETSLEIIKTLVEAGADILEL--GVPFSDPVADGPTIQAAHLRALAAGVTL 78 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEE---eCCCCCHHHHHHHHHHHHhCCCCEEEe--cCCCCCcCccCHHHHHHHHHHHHCCCCH
Confidence 44555556665555545553 356777888899999999999999865 33 1 11111 110 0112234
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCH--HHHHHHHHhCC
Q 010948 205 EEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASK--EEMKAFCEISP 276 (497)
Q Consensus 205 ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~--eei~~i~~~v~ 276 (497)
+...+-++.+++.-. ..++++..=-.-.-..|++.-+++ ..++|+|.+.++-++-+ +++...+++..
T Consensus 79 ~~~lel~~~~r~~~~--~~Pivlm~Y~Npi~~~Gie~F~~~---~~~~GvdGlivpDLP~ee~~~~~~~~~~~g 147 (265)
T COG0159 79 EDTLELVEEIRAKGV--KVPIVLMTYYNPIFNYGIEKFLRR---AKEAGVDGLLVPDLPPEESDELLKAAEKHG 147 (265)
T ss_pred HHHHHHHHHHHhcCC--CCCEEEEEeccHHHHhhHHHHHHH---HHHcCCCEEEeCCCChHHHHHHHHHHHHcC
Confidence 444444444443311 234565543322234566555555 45899999999988743 35666666543
No 470
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=81.54 E-value=8.5 Score=39.24 Aligned_cols=78 Identities=27% Similarity=0.355 Sum_probs=51.7
Q ss_pred HHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHHhCCC-CCccceeeecCCCCCCCCH
Q 010948 218 RKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNP 296 (497)
Q Consensus 218 r~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~lt~ 296 (497)
|+..+++..|-.-++. ++.++...++|||.|.+..+ +.++++++++.++. +|+ ...||-+ .-++
T Consensus 172 r~~~~~~~~Igvev~t---------~eea~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~~~ipi----~AsGGI~-~~ni 236 (265)
T TIGR00078 172 RAAAPFALKIEVEVES---------LEEAEEAAEAGADIIMLDNM-KPEEIKEAVQLLKGRVLL----EASGGIT-LDNL 236 (265)
T ss_pred HHhCCCCCeEEEEeCC---------HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcCCCcE----EEECCCC-HHHH
Confidence 3334556666655554 34455667899999999765 45899998887632 332 2333433 2467
Q ss_pred HHHHhcCCCEEecc
Q 010948 297 LELEELGFKLVAYP 310 (497)
Q Consensus 297 ~eL~elGv~~Vsyp 310 (497)
.++.+.|+..++.+
T Consensus 237 ~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 237 EEYAETGVDVISSG 250 (265)
T ss_pred HHHHHcCCCEEEeC
Confidence 89999999999984
No 471
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=81.52 E-value=15 Score=39.87 Aligned_cols=108 Identities=20% Similarity=0.181 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHhh---cCcceEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHH
Q 010948 133 ISYGEMVDQGQLITQA---VSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (497)
Q Consensus 133 ltldEml~~~r~I~ra---~~iPVIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~ 208 (497)
.|.+|.++.+....+. .++++..++++.+. ++..+.+.++.+.++||.-|+|=|.++ ...+.++.
T Consensus 110 ~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG-----------~~~P~~~~ 178 (409)
T COG0119 110 KTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVG-----------VATPNEVA 178 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcC-----------ccCHHHHH
Confidence 7888888877665543 36999999999987 568899999999999999999999862 33456777
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEE
Q 010948 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (497)
Q Consensus 209 ~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~If 258 (497)
+.|++.+..-. ....|=. ..-+++--|+.=..+..+|||+.|=
T Consensus 179 ~~i~~l~~~v~---~~~~l~~----H~HnD~G~AvANslaAv~aGa~~v~ 221 (409)
T COG0119 179 DIIEALKANVP---NKVILSV----HCHNDLGMAVANSLAAVEAGADQVE 221 (409)
T ss_pred HHHHHHHHhCC---CCCeEEE----EecCCcchHHHHHHHHHHcCCcEEE
Confidence 88887776532 1111111 1123344566677777789998763
No 472
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=81.44 E-value=12 Score=39.39 Aligned_cols=166 Identities=19% Similarity=0.208 Sum_probs=99.3
Q ss_pred eecccCChHHHHHHH------HhCCcEEEecchhhhhhhcccCCCCCCCHH---HHHHHHHHHHhhc-CcceEeeC----
Q 010948 92 QGPACFDALSAKLVE------KSGFSFCFTSGFSISAARLALPDTGFISYG---EMVDQGQLITQAV-SIPVIGDG---- 157 (497)
Q Consensus 92 v~p~ayDalSAriae------~aGfdAI~vSG~avSas~lG~PD~g~ltld---Eml~~~r~I~ra~-~iPVIaD~---- 157 (497)
.|||.|=..--++++ +.|.+++.+=|.. . . ....+.-.++ =+...++.|.+.. ++-||+|.
T Consensus 51 smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~---~-~-Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~ 125 (322)
T PRK13384 51 TLPGISRLPESALADEIERLYALGIRYVMPFGIS---H-H-KDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCE 125 (322)
T ss_pred CCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCC---C-C-CCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeeccc
Confidence 578777554333333 4689888875431 1 1 1111222222 1345566676665 47788774
Q ss_pred --CCCC------C---CHHH---HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcC-
Q 010948 158 --DNGY------G---NAMN---VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG- 222 (497)
Q Consensus 158 --DtGY------G---~~~~---V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g- 222 (497)
++|+ | |... ..+.+-.+.+|||+-|---|- ++| ||.|++++.++.|
T Consensus 126 YT~hGHcGil~~g~i~ND~Tl~~L~~~Als~A~AGADiVAPSdM--------MDG-----------rV~aIR~aLd~~g~ 186 (322)
T PRK13384 126 YTDHGHCGVLHNDEVDNDATVENLVKQSVTAAKAGADMLAPSAM--------MDG-----------QVKAIRQGLDAAGF 186 (322)
T ss_pred CCCCCceeeccCCcCccHHHHHHHHHHHHHHHHcCCCeEecccc--------ccc-----------HHHHHHHHHHHCCC
Confidence 3342 1 3333 334445566899988877664 232 5555555554433
Q ss_pred CCeEEEEeccchh-------------------------cccHHHHHHHHHHHHhcCCCEEEe-ccCCCHHHHHHHHHhCC
Q 010948 223 SDIVIVARTDSRQ-------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEISP 276 (497)
Q Consensus 223 ~dfvIiARTDA~~-------------------------~~~ldeaIeRAkAY~eAGAD~IfI-eg~~s~eei~~i~~~v~ 276 (497)
.+.-|.+-+--++ ...-.||++.+..=.+-|||+|+| |+++..+.++++.+.+.
T Consensus 187 ~~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~~~ 266 (322)
T PRK13384 187 EHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTPYLDVLSRLRQETH 266 (322)
T ss_pred CCCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCchHHHHHHHHHhccC
Confidence 2445555443221 012588999999999999999999 88999999999988764
Q ss_pred CCCccc
Q 010948 277 LVPKMA 282 (497)
Q Consensus 277 ~vP~~~ 282 (497)
+|+.+
T Consensus 267 -lPvaa 271 (322)
T PRK13384 267 -LPLAA 271 (322)
T ss_pred -CCEEE
Confidence 67643
No 473
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=81.39 E-value=44 Score=34.08 Aligned_cols=153 Identities=12% Similarity=0.113 Sum_probs=86.6
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccE
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAG 181 (497)
|+.+.++|++.|=++++... --.|-. -..+++ .+.+.+..+.-+.+ +- ...+-+++..++|+..
T Consensus 26 ~~~L~~~Gv~~IEvGs~~~~---~~~p~~--~d~~~~---~~~l~~~~~~~~~~-----~~---~~~~dv~~A~~~g~~~ 89 (274)
T cd07938 26 IDALSAAGLRRIEVTSFVSP---KWVPQM--ADAEEV---LAGLPRRPGVRYSA-----LV---PNLRGAERALAAGVDE 89 (274)
T ss_pred HHHHHHcCCCEEEeCCCCCc---cccccc--CCHHHH---HhhcccCCCCEEEE-----EC---CCHHHHHHHHHcCcCE
Confidence 45667889999999875321 113422 123333 33332211111111 11 1234567778899999
Q ss_pred EEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccch-----hcccHHHHHHHHHHHHhcCCCE
Q 010948 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-----QALSLEESLRRSRAFADAGADV 256 (497)
Q Consensus 182 I~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~-----~~~~ldeaIeRAkAY~eAGAD~ 256 (497)
|+|-...++ .|...+-=.+.++.++++..+++..++.|....+ .=+.++ .....+..++-++.+.++|||.
T Consensus 90 i~i~~~~Sd---~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~-~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 90 VAVFVSASE---TFSQKNINCSIAESLERFEPVAELAKAAGLRVRG-YVSTAFGCPYEGEVPPERVAEVAERLLDLGCDE 165 (274)
T ss_pred EEEEEecCH---HHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE-EEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 999876642 1221111124577778877777766654432221 111111 1235788899999999999999
Q ss_pred EEec---cCCCHHHHHHHHHh
Q 010948 257 LFID---ALASKEEMKAFCEI 274 (497)
Q Consensus 257 IfIe---g~~s~eei~~i~~~ 274 (497)
|.+. |.-++.++.++.+.
T Consensus 166 i~l~DT~G~~~P~~v~~lv~~ 186 (274)
T cd07938 166 ISLGDTIGVATPAQVRRLLEA 186 (274)
T ss_pred EEECCCCCccCHHHHHHHHHH
Confidence 9885 44566777766654
No 474
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=81.37 E-value=23 Score=36.24 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHH-HhCCCCCcc
Q 010948 203 SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFC-EISPLVPKM 281 (497)
Q Consensus 203 p~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~-~~v~~vP~~ 281 (497)
+.||.++.+..++++. ..++|--+--..-.-...|..+.+.++|.+.-++||+++....+... .++- +|.+
T Consensus 60 tLeeIi~~m~~a~~~G-------k~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT-~P~v 131 (254)
T COG2875 60 TLEEIIDLMVDAVREG-------KDVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELT-VPGV 131 (254)
T ss_pred CHHHHHHHHHHHHHcC-------CeEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceee-cCCc
Confidence 5688888877776653 23566544211123345677888999999999999998753332222 2221 3332
Q ss_pred ce---eeecCCCCCCC---CHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 010948 282 AN---MLEGGGKTPIL---NPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (497)
Q Consensus 282 ~N---~l~~~g~tP~l---t~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~~g~ 332 (497)
.+ ++-..|++|.. ++++|.+.|..++|| .+...+..+.+.|..|.
T Consensus 132 sQtvilTR~sgrt~vpe~e~l~~la~~~aTm~I~------L~v~~I~~vv~~L~~g~ 182 (254)
T COG2875 132 SQTVILTRPSGRTPVPEKESLAALAKHGATMVIF------LGVHAIDKVVEELLEGG 182 (254)
T ss_pred ceeEEEEccccCCCCCchhHHHHHHhcCceeEee------ehhhHHHHHHHHHhcCC
Confidence 22 22234667644 456677778888888 24556778888888753
No 475
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=81.26 E-value=18 Score=35.14 Aligned_cols=154 Identities=17% Similarity=0.125 Sum_probs=89.4
Q ss_pred HHHHHHhCCCceeecccCChHHH----HHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHh---hcCc
Q 010948 80 SLRQILELPGVHQGPACFDALSA----KLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSI 151 (497)
Q Consensus 80 ~Lr~ll~~~~~iv~p~ayDalSA----riae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~r---a~~i 151 (497)
.+++.+.. ..+.+..-+..-.- ..+..+|.+.+.+. +..-.. -. ..-..+.++.++.+..+.+ ..+.
T Consensus 48 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~---~~-~~~~~~~~~~~~~~~~~v~~ak~~g~ 122 (237)
T PF00682_consen 48 RLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLH---IR-KNLNKSREEALERIEEAVKYAKELGY 122 (237)
T ss_dssp HHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHH---HH-HHTCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHH---HH-HhhcCCHHHHHHHHHHHHHHHHhcCC
Confidence 34444444 34444433333333 33446899988877 222110 01 1123577777776665544 3356
Q ss_pred ceEeeCCCCC-CCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010948 152 PVIGDGDNGY-GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (497)
Q Consensus 152 PVIaD~DtGY-G~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiAR 230 (497)
.+.+-.++.+ -++..+.+.++.+.++|++.|.|-|.. | ...+++..+.|+++++...+ ..+-+=+.
T Consensus 123 ~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~-----G------~~~P~~v~~lv~~~~~~~~~--~~l~~H~H 189 (237)
T PF00682_consen 123 EVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTV-----G------IMTPEDVAELVRALREALPD--IPLGFHAH 189 (237)
T ss_dssp EEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETT-----S-------S-HHHHHHHHHHHHHHSTT--SEEEEEEB
T ss_pred ceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCcc-----C------CcCHHHHHHHHHHHHHhccC--CeEEEEec
Confidence 6677766654 367889999999999999999999986 3 34566777777777766421 12222233
Q ss_pred ccchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 231 TDSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 231 TDA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
.|- --++.-+.+..+||||.|
T Consensus 190 nd~------Gla~An~laA~~aGa~~i 210 (237)
T PF00682_consen 190 NDL------GLAVANALAALEAGADRI 210 (237)
T ss_dssp BTT------S-HHHHHHHHHHTT-SEE
T ss_pred CCc------cchhHHHHHHHHcCCCEE
Confidence 222 235677888889999996
No 476
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=81.15 E-value=5.4 Score=41.24 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=59.0
Q ss_pred HHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHh
Q 010948 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (497)
Q Consensus 172 k~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~e 251 (497)
+.++++|..++-+-.-..--.+|-.+. .+++.+|+++.++.+.++. +.-|++=-|.--.. ...+.+-.+.|++
T Consensus 27 ri~e~aGf~Ai~~sg~~~a~~lG~pD~-g~lt~~e~~~~~~~I~~~~-----~iPviaD~d~GyG~-~~~v~~tv~~~~~ 99 (285)
T TIGR02317 27 LLAERAGFEAIYLSGAAVAASLGLPDL-GITTLDEVAEDARRITRVT-----DLPLLVDADTGFGE-AFNVARTVREMED 99 (285)
T ss_pred HHHHHcCCCEEEEcHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhcc-----CCCEEEECCCCCCC-HHHHHHHHHHHHH
Confidence 466778999998866432124555443 3789999999998887663 44466655553222 5677788999999
Q ss_pred cCCCEEEecc
Q 010948 252 AGADVLFIDA 261 (497)
Q Consensus 252 AGAD~IfIeg 261 (497)
|||.+|.||-
T Consensus 100 aG~agi~IED 109 (285)
T TIGR02317 100 AGAAAVHIED 109 (285)
T ss_pred cCCeEEEEec
Confidence 9999999974
No 477
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=81.13 E-value=14 Score=38.90 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=100.5
Q ss_pred eecccCChHHHHHHH------HhCCcEEEecchhhhhhhcccCC-CCCCCHHH---HHHHHHHHHhhc-CcceEeeC---
Q 010948 92 QGPACFDALSAKLVE------KSGFSFCFTSGFSISAARLALPD-TGFISYGE---MVDQGQLITQAV-SIPVIGDG--- 157 (497)
Q Consensus 92 v~p~ayDalSAriae------~aGfdAI~vSG~avSas~lG~PD-~g~ltldE---ml~~~r~I~ra~-~iPVIaD~--- 157 (497)
.|||.|-..--++.+ +.|.+++.+=|.- .. . .-| .+.-.+++ +...++.|.+.. ++-||+|.
T Consensus 44 smPg~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~-~~-~--~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc 119 (320)
T cd04823 44 SMPGVFRLSIDELLKEAEEAVDLGIPAVALFPVT-PP-E--LKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALD 119 (320)
T ss_pred CCCCceeeCHHHHHHHHHHHHHcCCCEEEEecCC-Cc-c--cCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeecc
Confidence 578776544333333 4588888875531 10 0 111 12222221 445566676665 47788884
Q ss_pred ---CCCC------C---CHH---HHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcC
Q 010948 158 ---DNGY------G---NAM---NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (497)
Q Consensus 158 ---DtGY------G---~~~---~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g 222 (497)
++|+ | |.. ...+.+-.+.+|||+-|---|- ++ .||.|++++.++.|
T Consensus 120 ~YT~hGHcGil~~~~idND~Tl~~L~~~Avs~A~AGADiVAPSdM--------MD-----------GrV~aIR~aLd~~g 180 (320)
T cd04823 120 PYTSHGHDGIVRDGGILNDETVEVLCKQALVQAEAGADIVAPSDM--------MD-----------GRIGAIREALDAEG 180 (320)
T ss_pred CCCCCCcceeccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccc--------hh-----------hHHHHHHHHHHHCC
Confidence 3443 1 222 3444455667899988876663 22 35666666655433
Q ss_pred -CCeEEEEeccchh--------------------------cccHHHHHHHHHHHHhcCCCEEEe-ccCCCHHHHHHHHHh
Q 010948 223 -SDIVIVARTDSRQ--------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEI 274 (497)
Q Consensus 223 -~dfvIiARTDA~~--------------------------~~~ldeaIeRAkAY~eAGAD~IfI-eg~~s~eei~~i~~~ 274 (497)
.+.-|.+-+--++ ...-.||++.+..=.+-|||+|+| |+++..+.++.+.+.
T Consensus 181 ~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~YLDIi~~~k~~ 260 (320)
T cd04823 181 FTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMPYLDIIRRVKDE 260 (320)
T ss_pred CCCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHHh
Confidence 2455665543321 012578999999999999999999 889999999999988
Q ss_pred CCCCCccc
Q 010948 275 SPLVPKMA 282 (497)
Q Consensus 275 v~~vP~~~ 282 (497)
+. +|+.+
T Consensus 261 ~~-lPvaa 267 (320)
T cd04823 261 FG-VPTFA 267 (320)
T ss_pred cC-CCEEE
Confidence 75 67643
No 478
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=81.12 E-value=34 Score=35.04 Aligned_cols=158 Identities=17% Similarity=0.241 Sum_probs=101.2
Q ss_pred HHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCC
Q 010948 80 SLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN 159 (497)
Q Consensus 80 ~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~Dt 159 (497)
.|+.+..-|+|+ --|+...+.|+|=+..= -+.||..| .+-|++.+++++..+.+|+.|=
T Consensus 22 ~F~~lrd~GDpV--------elA~~Y~e~GADElvFl--DItAs~~g--------r~~~~~vv~r~A~~vfiPltVG--- 80 (256)
T COG0107 22 NFKNLRDAGDPV--------ELAKRYNEEGADELVFL--DITASSEG--------RETMLDVVERVAEQVFIPLTVG--- 80 (256)
T ss_pred cccchhhcCChH--------HHHHHHHHcCCCeEEEE--eccccccc--------chhHHHHHHHHHhhceeeeEec---
Confidence 355555555443 23577788899876643 22233334 4567888899999999999882
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEE---ecc--c-
Q 010948 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA---RTD--S- 233 (497)
Q Consensus 160 GYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiA---RTD--A- 233 (497)
|+. .-.+.++++.++||+=|.|.-.. +..++ ++. ++.+..|.-++|+| |-+ .
T Consensus 81 --GGI-~s~eD~~~ll~aGADKVSINsaA------------v~~p~-lI~------~~a~~FGsQciVvaIDakr~~~g~ 138 (256)
T COG0107 81 --GGI-RSVEDARKLLRAGADKVSINSAA------------VKDPE-LIT------EAADRFGSQCIVVAIDAKRVPDGE 138 (256)
T ss_pred --CCc-CCHHHHHHHHHcCCCeeeeChhH------------hcChH-HHH------HHHHHhCCceEEEEEEeeeccCCC
Confidence 222 12344568889999888885432 33332 333 33445677777764 221 1
Q ss_pred ---hh--------cccHHHHHHHHHHHHhcCCCEEEeccC--------CCHHHHHHHHHhCCCCCccc
Q 010948 234 ---RQ--------ALSLEESLRRSRAFADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMA 282 (497)
Q Consensus 234 ---~~--------~~~ldeaIeRAkAY~eAGAD~IfIeg~--------~s~eei~~i~~~v~~vP~~~ 282 (497)
+. ..+ -++++-++.+++.||==|++-++ -+.+.++.+++.+. +|+.+
T Consensus 139 ~~~~~v~~~gGr~~t~-~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~-iPvIA 204 (256)
T COG0107 139 NGWYEVFTHGGREDTG-LDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVN-IPVIA 204 (256)
T ss_pred CCcEEEEecCCCcCCC-cCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCC-CCEEe
Confidence 00 112 25789999999999999998775 25788888888876 67653
No 479
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=81.05 E-value=28 Score=37.94 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=76.0
Q ss_pred HHHHHhhcCcceEeeCCCC-CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHH-HH
Q 010948 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-AR 218 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtG-YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~-Ar 218 (497)
+|++....+-||+.-+=-- -| ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..+++ +.
T Consensus 135 ~R~~lgv~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IK-DDE~-------l~~q~~~p~~eRv~~~~~a~~~a~ 206 (412)
T TIGR03326 135 VREFLGIKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLK-DDEN-------LTSQPFNRFEERVEKLYKVRDKVE 206 (412)
T ss_pred HHHHhCCCCCceEEeeccccccCChHHHHHHHHHHHhcCCceee-cCCC-------CCCCCCccHHHHHHHHHHHHHHHH
Confidence 5666666679999876655 45 578889999999999999776 3432 233455666655444444432 23
Q ss_pred HhcCCC--eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCC-HHHHHHHHH
Q 010948 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCE 273 (497)
Q Consensus 219 ~~~g~d--fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s-~eei~~i~~ 273 (497)
++.|.. +.+|- | .+.+|.++|++...++|+.++++.-... ..-++.+.+
T Consensus 207 ~eTG~~~~ya~Ni-T-----~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~ 258 (412)
T TIGR03326 207 AETGERKEYLANI-T-----APVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRE 258 (412)
T ss_pred HHhCCcceEEEEe-c-----CCHHHHHHHHHHHHHhCCCeEEEEeeccchHHHHHHHH
Confidence 344432 23332 2 2358999999999999999999865432 344555554
No 480
>PLN02321 2-isopropylmalate synthase
Probab=81.03 E-value=25 Score=40.38 Aligned_cols=152 Identities=20% Similarity=0.142 Sum_probs=88.3
Q ss_pred HHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHhhc--Cc------ceEeeCCCCCC--CHHHHHHH
Q 010948 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SI------PVIGDGDNGYG--NAMNVKRT 170 (497)
Q Consensus 101 SAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~ra~--~i------PVIaD~DtGYG--~~~~V~rt 170 (497)
-|+.+.++|++.|=++...++ |+ .++. ++.|.+.. .+ |+|+ +++ +...+.++
T Consensus 113 Ia~~L~~lGVd~IEvGfP~~S------p~----D~e~----vr~i~~~~~~~v~~~~~v~~i~----a~~ra~~~dId~A 174 (632)
T PLN02321 113 IARQLAKLGVDIIEAGFPIAS------PD----DLEA----VKTIAKEVGNEVDEDGYVPVIC----GLSRCNKKDIDAA 174 (632)
T ss_pred HHHHHHHcCCCEEEEeCcCCC------cc----HHHH----HHHHHHhcccCCCccccceeee----eehhccHHhHHHH
Confidence 356777899999988643322 12 2222 44443321 11 3221 344 33455555
Q ss_pred HHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH
Q 010948 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (497)
Q Consensus 171 Vk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~ 250 (497)
.+.+..++...||+--..++- |...+--.+.+|.++++..+++..++.|.+.+...=-|+. ..+.+.+++-++++.
T Consensus 175 ~~al~~a~~~~I~i~~stSd~---h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~-rtd~d~l~~~~~~a~ 250 (632)
T PLN02321 175 WEAVKHAKRPRIHTFIATSEI---HMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG-RSDPEFLYRILGEVI 250 (632)
T ss_pred HHHhcCCCCCEEEEEEcCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC-CCCHHHHHHHHHHHH
Confidence 544434444568876554322 3222223478999999999988877665432333222332 235788899999999
Q ss_pred hcCCCEEEec---cCCCHHHHHHHHHh
Q 010948 251 DAGADVLFID---ALASKEEMKAFCEI 274 (497)
Q Consensus 251 eAGAD~IfIe---g~~s~eei~~i~~~ 274 (497)
++|||.|.+. |...++++.++.+.
T Consensus 251 ~aGa~~I~L~DTvG~~~P~~v~~li~~ 277 (632)
T PLN02321 251 KAGATTLNIPDTVGYTLPSEFGQLIAD 277 (632)
T ss_pred HcCCCEEEecccccCCCHHHHHHHHHH
Confidence 9999999886 34566676666654
No 481
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=80.87 E-value=57 Score=31.69 Aligned_cols=120 Identities=21% Similarity=0.207 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHhhcCcceEeeCCC----CCC--CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHH
Q 010948 133 ISYGEMVDQGQLITQAVSIPVIGDGDN----GYG--NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREE 206 (497)
Q Consensus 133 ltldEml~~~r~I~ra~~iPVIaD~Dt----GYG--~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee 206 (497)
.+.+.....+..+.+.+++|+|+-.-+ |+. +...-.+..+.+++.|++.|-||=... ++
T Consensus 37 ~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~---------------~~ 101 (224)
T PF01487_consen 37 DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELDLF---------------PD 101 (224)
T ss_dssp TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGGCC---------------HH
T ss_pred cChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcccc---------------hh
Confidence 567778888888888889999998875 432 334555677888999999999998631 22
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec-cCCCHHHHHHHH
Q 010948 207 AVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID-ALASKEEMKAFC 272 (497)
Q Consensus 207 ~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe-g~~s~eei~~i~ 272 (497)
...+...+ +. +.--+|...-|-......++.++......+.|||++=+- ...+.++..++.
T Consensus 102 ~~~~~~~~---~~--~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~ 163 (224)
T PF01487_consen 102 DLKSRLAA---RK--GGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLL 163 (224)
T ss_dssp HHHHHHHH---HH--TTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHH
T ss_pred HHHHHHHH---hh--CCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHH
Confidence 32222222 11 223455666654444566777888888889999998543 334555544443
No 482
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=80.85 E-value=2 Score=43.71 Aligned_cols=48 Identities=17% Similarity=0.410 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEeccC-----------CCHHHHHHHH----HhCCCCCccceeeec
Q 010948 239 LEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFC----EISPLVPKMANMLEG 287 (497)
Q Consensus 239 ldeaIeRAkAY~eAGAD~IfIeg~-----------~s~eei~~i~----~~v~~vP~~~N~l~~ 287 (497)
+|.|++.|.+|+++|+|+|.+|-. .+..-|..++ +++. +|.=+|+|-.
T Consensus 33 id~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~-iPvGvNVLrN 95 (263)
T COG0434 33 IDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVS-IPVGVNVLRN 95 (263)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhcc-ccceeeeecc
Confidence 577788899999999999999853 1223444444 3443 7899999975
No 483
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=80.78 E-value=35 Score=37.65 Aligned_cols=125 Identities=16% Similarity=0.244 Sum_probs=77.7
Q ss_pred HHHHHhhcCcceEeeCCCC-CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHH-H
Q 010948 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA-R 218 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtG-YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~A-r 218 (497)
+|++....+-||+.=+=-- -| ++.+..+.+..+...|++=|| .|.. ...++..|.++-+..+..+++. .
T Consensus 136 ~R~~lgv~~RPL~~tiiKP~iGlsp~~~A~~~~~~~~GGvD~IK-DDE~-------l~~~~~~p~~~Rv~~~~~a~~~a~ 207 (450)
T cd08212 136 ERDRLNKYGRPLLGCTIKPKLGLSAKNYGRVVYECLRGGLDFTK-DDEN-------INSQPFMRWRDRFLFVAEAVNKAQ 207 (450)
T ss_pred HHHHhCCCCCceEEEeccCccCCCHHHHHHHHHHHHccCCcccc-cCcc-------CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667777789998876443 24 577888889999999998665 2322 2234466666555554444433 2
Q ss_pred HhcCCC--eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEec---cCCCHHHHHHHHHhCCCCCc
Q 010948 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPLVPK 280 (497)
Q Consensus 219 ~~~g~d--fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIe---g~~s~eei~~i~~~v~~vP~ 280 (497)
++.|.. +.+|.- +...+|.++|++...++|+.++++. |+.....+++.++.. .+|+
T Consensus 208 ~eTG~~~~y~~NiT-----a~~~~em~~ra~~a~~~G~~~~mv~~~~G~~~l~~l~~~a~~~-~l~I 268 (450)
T cd08212 208 AETGEVKGHYLNVT-----AGTMEEMYKRAEFAKELGSPIIMHDLLTGFTAIQSLAKWCRDN-GMLL 268 (450)
T ss_pred HhhCCcceeecccc-----CCCHHHHHHHHHHHHHhCCCeEeeecccccchHHHHHHHhhhc-CceE
Confidence 334421 122211 1347999999999999999999887 444445555544453 3443
No 484
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=80.78 E-value=59 Score=31.76 Aligned_cols=156 Identities=21% Similarity=0.152 Sum_probs=90.1
Q ss_pred HHHHHHHHhCC--CceeecccCChHHHHHHHHhCCcEEEecchh-hhhhhcccCCCCCCCH----HHHHHHHHHHHhhcC
Q 010948 78 AKSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTSGFS-ISAARLALPDTGFISY----GEMVDQGQLITQAVS 150 (497)
Q Consensus 78 a~~Lr~ll~~~--~~iv~p~ayDalSAriae~aGfdAI~vSG~a-vSas~lG~PD~g~ltl----dEml~~~r~I~ra~~ 150 (497)
.+.++++.+.. -.+.+..--..--++.+.++|++.+.++-.. -... .-- ...+. +++...++.. +..+
T Consensus 54 ~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~---~~~-~~~~~~~~~~~~~~~i~~a-~~~G 128 (265)
T cd03174 54 WEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHS---RKN-LNKSREEDLENAEEAIEAA-KEAG 128 (265)
T ss_pred HHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHH---HHH-hCCCHHHHHHHHHHHHHHH-HHCC
Confidence 44455555544 2332322222455677778899988887211 1100 000 11233 3444444443 3357
Q ss_pred cceEeeCCCCCC---CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEE
Q 010948 151 IPVIGDGDNGYG---NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (497)
Q Consensus 151 iPVIaD~DtGYG---~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvI 227 (497)
+++.+...+-++ ++..+.+.++.+.++|+..|.|-|.. | +..++++.+.|+..++.. ++..+
T Consensus 129 ~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~-----G------~~~P~~v~~li~~l~~~~----~~~~~ 193 (265)
T cd03174 129 LEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTV-----G------LATPEEVAELVKALREAL----PDVPL 193 (265)
T ss_pred CeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhc-----C------CcCHHHHHHHHHHHHHhC----CCCeE
Confidence 899999966554 56789999999999999999999975 2 345566666666666543 22222
Q ss_pred EEeccchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 228 VARTDSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 228 iARTDA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
-..+ -+.+-=++.-+.+..+|||+.|
T Consensus 194 ~~H~----Hn~~gla~an~laA~~aG~~~i 219 (265)
T cd03174 194 GLHT----HNTLGLAVANSLAALEAGADRV 219 (265)
T ss_pred EEEe----CCCCChHHHHHHHHHHcCCCEE
Confidence 2221 1122234667777789999875
No 485
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=80.77 E-value=15 Score=37.52 Aligned_cols=164 Identities=21% Similarity=0.228 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhCccEEEecCCC--CCCCCCCCCCccccCHHH-HHHHHHHHHHHHHh--cCCCeEEEEecc-----
Q 010948 163 NAMNVKRTVKGYIKAGFAGIILEDQV--SPKGCGHTRGRKVVSREE-AVMRIKAAVDARKE--SGSDIVIVARTD----- 232 (497)
Q Consensus 163 ~~~~V~rtVk~l~~AGaAGI~IEDq~--~pKrCGH~~gk~lvp~ee-~~~KIrAAv~Ar~~--~g~dfvIiARTD----- 232 (497)
+++.|.+.=+.|++|||+-|.= ... .+.+....+ -.--..++ ...-++-|++|+.. .+...+|.+---
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~T-nTy~a~~~~l~~~g-~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~ 116 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITT-NTYQASRERLKEYG-LSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAY 116 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-C-TT-SHHHHGGGT--GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S--
T ss_pred CHHHHHHHHHHHHHCCCCeEEe-cCCcCchhhhhhcC-CcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccccccc
Confidence 3556666678999999996642 221 111111111 00001112 12223444555543 122345555432
Q ss_pred ----chh---cccH----HHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHHH---hCCCCCccceeeec------CCCCC
Q 010948 233 ----SRQ---ALSL----EESLRRSRAFADAGADVLFIDALASKEEMKAFCE---ISPLVPKMANMLEG------GGKTP 292 (497)
Q Consensus 233 ----A~~---~~~l----deaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~~---~v~~vP~~~N~l~~------~g~tP 292 (497)
.+. .... +.-.+|++.+.++|+|.+++|-+++.+|++.+.+ +++..|.++.+... .|...
T Consensus 117 l~g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~~~l~~g~~~ 196 (305)
T PF02574_consen 117 LSGSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDSGRLRDGTSL 196 (305)
T ss_dssp ------CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEEES-TCTTBC
T ss_pred chhhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhhccccCCCCH
Confidence 111 1122 3345678999999999999999887666655553 32223444332211 12222
Q ss_pred CCCHHHHHhc------CCCEEeccchHHHHHHHHHHHHHHHH
Q 010948 293 ILNPLELEEL------GFKLVAYPLSLIGVSVRAMQDALTAI 328 (497)
Q Consensus 293 ~lt~~eL~el------Gv~~Vsyp~~ll~aa~~Am~~al~~i 328 (497)
......+.++ |+.-+-+-++..-..+.++.......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~~~~l~~~~~~~ 238 (305)
T PF02574_consen 197 EDAVQVIDELLRALPPGPDAIGVNCTSPPEIMKALLELMSAT 238 (305)
T ss_dssp TTSHHHHHHHHHHHCTT-SEEEEESSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhheEEcCCCCcHHHHhHHHHHHhcc
Confidence 3345555555 66666555444444444444444433
No 486
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=80.70 E-value=47 Score=36.89 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=74.7
Q ss_pred HHHHHhhcCcceEeeCCCC-CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHH-HHH
Q 010948 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV-DAR 218 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtG-YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv-~Ar 218 (497)
+|++....+-||+.=+=-- -| ++.+..+.+.++...|++=||= |.. ...++..|.++-+..+..++ ++.
T Consensus 151 iR~~lgv~~RPL~gtiiKP~~GLsp~~~a~~~y~~~~GGvD~IKD-DE~-------l~~q~f~p~~~Rv~~~~~a~~~a~ 222 (468)
T PRK04208 151 ERERLDKYGRPLLGTTPKPKLGLSAKNYGRVVYEALRGGLDFTKD-DEN-------LNSQPFNRWRDRFLFVMEAIDKAE 222 (468)
T ss_pred HHHHhCCCCCceEEEeeccccCCCHHHHHHHHHHHHhcCCceeeC-CCC-------CCCCCCccHHHHHHHHHHHHHHHH
Confidence 5666666778988765554 35 5788999999999999998862 432 22344556665444443333 333
Q ss_pred HhcCCC--eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCC-HHHHHHHHH
Q 010948 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCE 273 (497)
Q Consensus 219 ~~~g~d--fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s-~eei~~i~~ 273 (497)
++.|.. +.+|.-. ...+|.++|++...++|+.++++..... ..-++.+.+
T Consensus 223 ~eTG~~k~y~~NiT~-----~~~~em~~ra~~~~e~G~~~~mv~~~~~G~~~l~~l~~ 275 (468)
T PRK04208 223 AETGERKGHYLNVTA-----PTMEEMYKRAEFAKELGSPIVMIDVVTAGWTALQSLRE 275 (468)
T ss_pred HhhCCcceEEEecCC-----CCHHHHHHHHHHHHHhCCCEEEEeccccccHHHHHHHH
Confidence 344432 2333221 2268999999999999999999875432 233444444
No 487
>PLN02591 tryptophan synthase
Probab=80.66 E-value=23 Score=35.89 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccc-----------cCHHHHHHHHHHHHHHHHhcCCCeEE
Q 010948 159 NGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKV-----------VSREEAVMRIKAAVDARKESGSDIVI 227 (497)
Q Consensus 159 tGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~l-----------vp~ee~~~KIrAAv~Ar~~~g~dfvI 227 (497)
.||-+.+...+.++.|+++||+.|-| +. |=.-.-.+|..+ +..+...+-++..+ ++...++++
T Consensus 10 aG~P~~e~~~~~~~~l~~~Gad~iEl--Gi-PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r---~~~~~p~il 83 (250)
T PLN02591 10 AGDPDLDTTAEALRLLDACGADVIEL--GV-PYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVA---PQLSCPIVL 83 (250)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEE--CC-CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh---cCCCCCEEE
Confidence 47777777888888999999998865 33 100001122211 12222233333222 222234554
Q ss_pred EEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCCHHHHHHHH
Q 010948 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFC 272 (497)
Q Consensus 228 iARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s~eei~~i~ 272 (497)
..=..-.-..++|.-+++|+ ++|+|.+.++-++- ||...+.
T Consensus 84 m~Y~N~i~~~G~~~F~~~~~---~aGv~GviipDLP~-ee~~~~~ 124 (250)
T PLN02591 84 FTYYNPILKRGIDKFMATIK---EAGVHGLVVPDLPL-EETEALR 124 (250)
T ss_pred EecccHHHHhHHHHHHHHHH---HcCCCEEEeCCCCH-HHHHHHH
Confidence 44333333457777766654 89999999999874 4444444
No 488
>PRK06801 hypothetical protein; Provisional
Probab=80.65 E-value=3.9 Score=42.23 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=48.1
Q ss_pred HHHHHhCCcEEEecchhhhhhhcccCCCC-CCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHHHHHHHhCccE
Q 010948 103 KLVEKSGFSFCFTSGFSISAARLALPDTG-FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (497)
Q Consensus 103 riae~aGfdAI~vSG~avSas~lG~PD~g-~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAG 181 (497)
+.+++.|.|.+.+ +.+. .+|..+.. .+.++ ..+.|.+.+++||+.=.-+|-+ .+.+++++++|++.
T Consensus 163 ~f~~~tgvD~LAv-aiGt---~Hg~y~~~~~l~~e----~l~~i~~~~~~PLVlHGGSgi~-----~e~~~~~i~~Gi~K 229 (286)
T PRK06801 163 DFVDRTGIDALAV-AIGN---AHGKYKGEPKLDFA----RLAAIHQQTGLPLVLHGGSGIS-----DADFRRAIELGIHK 229 (286)
T ss_pred HHHHHHCcCEEEe-ccCC---CCCCCCCCCCCCHH----HHHHHHHhcCCCEEEECCCCCC-----HHHHHHHHHcCCcE
Confidence 5556899999999 5554 36766643 35555 4556666678999885444422 24456778999999
Q ss_pred EEecC
Q 010948 182 IILED 186 (497)
Q Consensus 182 I~IED 186 (497)
|||--
T Consensus 230 INv~T 234 (286)
T PRK06801 230 INFYT 234 (286)
T ss_pred EEehh
Confidence 99933
No 489
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=80.59 E-value=45 Score=33.87 Aligned_cols=180 Identities=17% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhh----cCcceEeeCCCCCCC-HHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCcc-ccCHHHHH
Q 010948 135 YGEMVDQGQLITQA----VSIPVIGDGDNGYGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK-VVSREEAV 208 (497)
Q Consensus 135 ldEml~~~r~I~ra----~~iPVIaD~DtGYG~-~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~-lvp~ee~~ 208 (497)
++.++++.+.+.+. .++|||+-.-.--.. .....+.++++. +||+++-|.=. |.|..+.+ +-..++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~S-----cPn~~~~~~~~~~~~~~ 150 (295)
T PF01180_consen 77 LEYYLERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLS-----CPNVPGGRPFGQDPELV 150 (295)
T ss_dssp HHHHHHHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEEST-----STTSTTSGGGGGHHHHH
T ss_pred HHHHHHHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEee-----ccCCCCccccccCHHHH
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEEE----eccCC---------------------
Q 010948 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF----IDALA--------------------- 263 (497)
Q Consensus 209 ~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~If----Ieg~~--------------------- 263 (497)
..|..++....+ .+++|-=--+... .+....+....+.|+|+|. +....
T Consensus 151 ~~i~~~v~~~~~--~Pv~vKL~p~~~~----~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~ 224 (295)
T PF01180_consen 151 AEIVRAVREAVD--IPVFVKLSPNFTD----IEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGP 224 (295)
T ss_dssp HHHHHHHHHHHS--SEEEEEE-STSSC----HHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEG
T ss_pred HHHHHHHHhccC--CCEEEEecCCCCc----hHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCch
Q ss_pred -----CHHHHHHHHHhCC-CCCccceeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 010948 264 -----SKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (497)
Q Consensus 264 -----s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~lt~~eL~elGv~~Vsyp~~ll~aa~~Am~~al~~i~~ 330 (497)
+...++++.+.++ .+| ++..+|-.-.-+..|+-.+|.+.|-....++..-...+++..+.|.+
T Consensus 225 ~i~p~aL~~V~~~~~~~~~~i~----Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~~ 293 (295)
T PF01180_consen 225 AIRPIALRWVRELRKALGQDIP----IIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRELEE 293 (295)
T ss_dssp GGHHHHHHHHHHHHHHTTTSSE----EEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhccccceE----EEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHHHh
No 490
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=80.57 E-value=25 Score=35.16 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=70.9
Q ss_pred HHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHH---HhhcCcceEeeCC-----CCCCCHHHHHHHHHH
Q 010948 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLI---TQAVSIPVIGDGD-----NGYGNAMNVKRTVKG 173 (497)
Q Consensus 102 Ariae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I---~ra~~iPVIaD~D-----tGYG~~~~V~rtVk~ 173 (497)
++.+-+.|++++-+--. .| ++ +-.|++..++.| ++..++|++++.. .|+-+...+.+.++.
T Consensus 96 v~~al~~Ga~~v~~~~~------~g-~~----~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~ 164 (258)
T TIGR01949 96 VEDAIRMGADAVSIHVN------VG-SD----TEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARL 164 (258)
T ss_pred HHHHHHCCCCEEEEEEe------cC-Cc----hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHH
Confidence 44444667776665421 11 11 223444555544 4556899998765 344344566777788
Q ss_pred HHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcC
Q 010948 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (497)
Q Consensus 174 l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAG 253 (497)
..++||+-|+.. ++ . +.+ .++.++... ..+.++++=-. ...++++++......++|
T Consensus 165 a~~~GADyikt~---~~------~-----~~~----~l~~~~~~~---~iPVva~GGi~---~~~~~~~~~~i~~~~~aG 220 (258)
T TIGR01949 165 GAELGADIVKTP---YT------G-----DID----SFRDVVKGC---PAPVVVAGGPK---TNSDREFLQMIKDAMEAG 220 (258)
T ss_pred HHHHCCCEEecc---CC------C-----CHH----HHHHHHHhC---CCcEEEecCCC---CCCHHHHHHHHHHHHHcC
Confidence 889999999974 11 1 122 233333321 23454443211 124688899999999999
Q ss_pred CCEEEe
Q 010948 254 ADVLFI 259 (497)
Q Consensus 254 AD~IfI 259 (497)
|+.+-+
T Consensus 221 a~Gia~ 226 (258)
T TIGR01949 221 AAGVAV 226 (258)
T ss_pred CcEEeh
Confidence 998764
No 491
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=80.48 E-value=23 Score=36.14 Aligned_cols=136 Identities=14% Similarity=0.070 Sum_probs=79.6
Q ss_pred hHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhh---cCcceE------eeCCCC-CCCHHHH
Q 010948 99 ALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQA---VSIPVI------GDGDNG-YGNAMNV 167 (497)
Q Consensus 99 alSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra---~~iPVI------aD~DtG-YG~~~~V 167 (497)
.--...+-++|.+.+-+. +..-.. -. ..-..+.++.++.+....+. .+.-+. .+.+++ .-++..+
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~---~~-~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~ 151 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETF---SQ-KNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERV 151 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHH---HH-HHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHH
Confidence 334556667888876555 221110 01 11225567777766655443 244443 333332 2256778
Q ss_pred HHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHH
Q 010948 168 KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSR 247 (497)
Q Consensus 168 ~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAk 247 (497)
.+.++.++++|++.|.|-|.. | +..++++.+.|+++++.. ++.-|-..+=. .+--++.-+.
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DT~-----G------~~~P~~v~~lv~~l~~~~----~~~~i~~H~Hn----d~GlA~AN~l 212 (274)
T cd07938 152 AEVAERLLDLGCDEISLGDTI-----G------VATPAQVRRLLEAVLERF----PDEKLALHFHD----TRGQALANIL 212 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCC-----C------ccCHHHHHHHHHHHHHHC----CCCeEEEEECC----CCChHHHHHH
Confidence 899999999999999999986 3 334567777777776542 23333333211 2233566677
Q ss_pred HHHhcCCCEE
Q 010948 248 AFADAGADVL 257 (497)
Q Consensus 248 AY~eAGAD~I 257 (497)
+..+||||.|
T Consensus 213 aA~~aGa~~i 222 (274)
T cd07938 213 AALEAGVRRF 222 (274)
T ss_pred HHHHhCCCEE
Confidence 7889999965
No 492
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=80.40 E-value=47 Score=36.32 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=77.1
Q ss_pred HHHHHhhcCcceEeeCCCC-CC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHH-H
Q 010948 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA-R 218 (497)
Q Consensus 142 ~r~I~ra~~iPVIaD~DtG-YG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~A-r 218 (497)
+|++....+-||+.=+=-- -| ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..+++. .
T Consensus 123 iR~~lgv~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGiD~IK-DDE~-------l~~q~~~p~~eRv~~~~~a~~~a~ 194 (414)
T cd08206 123 EREILGKYGRPLLGTIVKPKLGLSPKEYARVVYEALRGGLDFVK-DDEN-------QNSQPFMRFEDRILFVAEAMDKAE 194 (414)
T ss_pred HHHHhCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcccc-cCcc-------CCCCCCCcHHHHHHHHHHHHHHHH
Confidence 5666666788998776554 35 578889999999999998775 2321 2344566776655555544433 3
Q ss_pred HhcCCC--eEEEEeccchhcccHHHHHHHHHHHHhcCCCEEEeccCCC-HHHHHHHHHh
Q 010948 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEI 274 (497)
Q Consensus 219 ~~~g~d--fvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~s-~eei~~i~~~ 274 (497)
++.|.. +.+|-- ....+|.++|++...++|+.++++.-... ..-++.+.+.
T Consensus 195 ~eTG~~~~y~~NiT-----~~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~ 248 (414)
T cd08206 195 AETGEAKGHYLNIT-----ADTPEEMIKRAEFAKELGSVIVMVDGVTAGWTAIQSARRW 248 (414)
T ss_pred HhhCCcceEEeccC-----CCcHHHHHHHHHHHHHhCCcEEEEeeecccHHHHHHHHHh
Confidence 334422 222211 11269999999999999999999974432 3455666654
No 493
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=80.32 E-value=20 Score=36.54 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=78.4
Q ss_pred HHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHH
Q 010948 168 KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSR 247 (497)
Q Consensus 168 ~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAk 247 (497)
..-..++++-|--|+.|-++. ..+--||.+.+-+-|++.++. .++.|+|.+--.- -+.+.
T Consensus 45 ~k~~~el~kkGy~g~llSGGm--------~srg~VPl~kf~d~lK~lke~-----~~l~inaHvGfvd-------E~~~e 104 (275)
T COG1856 45 LKRCMELEKKGYEGCLLSGGM--------DSRGKVPLWKFKDELKALKER-----TGLLINAHVGFVD-------ESDLE 104 (275)
T ss_pred HHHHHHHHhcCceeEEEeCCc--------CCCCCccHHHHHHHHHHHHHh-----hCeEEEEEeeecc-------HHHHH
Confidence 344457788899999998864 333468999999999888765 4799999985421 13456
Q ss_pred HHHhcCCCEEEeccCCCHHHHHHHHHhCCCCCccceeeecCCCCCCCCHHHHHhcCCCEE
Q 010948 248 AFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (497)
Q Consensus 248 AY~eAGAD~IfIeg~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~lt~~eL~elGv~~V 307 (497)
-+.++++|++.++-+.+.+.++++-+. | .-+.- + .-++..|++.|.+.|
T Consensus 105 klk~~~vdvvsLDfvgDn~vIk~vy~l-~---ksv~d------y-l~~l~~L~e~~irvv 153 (275)
T COG1856 105 KLKEELVDVVSLDFVGDNDVIKRVYKL-P---KSVED------Y-LRSLLLLKENGIRVV 153 (275)
T ss_pred HHHHhcCcEEEEeecCChHHHHHHHcC-C---ccHHH------H-HHHHHHHHHcCceec
Confidence 778999999999999998999988774 2 21110 1 126788888898765
No 494
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=80.31 E-value=43 Score=34.60 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccH
Q 010948 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (497)
Q Consensus 160 GYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~l 239 (497)
|.+++..+.+.++++.+.|...+||- +|. ++-+++|++++++. +++. =|-|+......
T Consensus 126 ~~~~~~~~~~~~~~~~~~G~~~~KlK-------v~~---------~~d~~~v~avr~~~----~~~~--l~vDaN~~w~~ 183 (321)
T PRK15129 126 VIGTPEQMANSASALWQAGAKLLKVK-------LDN---------HLISERMVAIRSAV----PDAT--LIVDANESWRA 183 (321)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEe-------CCC---------chHHHHHHHHHHhC----CCCe--EEEECCCCCCH
Confidence 45677778888888889999999982 221 11256777777663 2433 37799888889
Q ss_pred HHHHHHHHHHHhcCCCEEEeccC
Q 010948 240 EESLRRSRAFADAGADVLFIDAL 262 (497)
Q Consensus 240 deaIeRAkAY~eAGAD~IfIeg~ 262 (497)
++|++.++++.+.+ ..|+|-+
T Consensus 184 ~~A~~~~~~l~~~~--i~~iEqP 204 (321)
T PRK15129 184 EGLAARCQLLADLG--VAMLEQP 204 (321)
T ss_pred HHHHHHHHHHHhcC--ceEEECC
Confidence 99999999998875 5677765
No 495
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=80.24 E-value=6.3 Score=40.90 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=59.7
Q ss_pred HHHHHhCccEEEecCCCCC-CCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHH
Q 010948 172 KGYIKAGFAGIILEDQVSP-KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (497)
Q Consensus 172 k~l~~AGaAGI~IEDq~~p-KrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~ 250 (497)
+.++++|..+|-+-.-..- -.+|..+. .+++.+|+++.++.+.++. +.-|++=-|.--. +...+.+-.+.|+
T Consensus 31 ri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g~l~~~e~~~~~~~I~~~~-----~iPviaD~d~GyG-~~~~v~r~V~~~~ 103 (292)
T PRK11320 31 LLAERAGFKAIYLSGGGVAAASLGLPDL-GITTLDDVLIDVRRITDAC-----DLPLLVDIDTGFG-GAFNIARTVKSMI 103 (292)
T ss_pred HHHHHcCCCEEEeCHHHHHhHhcCCCCC-CCCCHHHHHHHHHHHHhcc-----CCCEEEECCCCCC-CHHHHHHHHHHHH
Confidence 5667899999988764321 34565543 3899999999999888773 3445655555322 5567778899999
Q ss_pred hcCCCEEEecc
Q 010948 251 DAGADVLFIDA 261 (497)
Q Consensus 251 eAGAD~IfIeg 261 (497)
+|||-+|.||-
T Consensus 104 ~aGaagi~IED 114 (292)
T PRK11320 104 KAGAAAVHIED 114 (292)
T ss_pred HcCCeEEEEec
Confidence 99999999974
No 496
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.11 E-value=40 Score=35.13 Aligned_cols=146 Identities=17% Similarity=0.238 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCceeecccCChHHHHHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHH------HHHHHHHHhhc-C
Q 010948 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEM------VDQGQLITQAV-S 150 (497)
Q Consensus 78 a~~Lr~ll~~~~~iv~p~ayDalSAriae~aGfdAI~vSG~avSas~lG~PD~g~ltldEm------l~~~r~I~ra~-~ 150 (497)
+.++.+...+.+..++-+=--.+..|.+++- |+.++| +.. -.+|+.|.-++--+++ ...++++.+.. .
T Consensus 125 t~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~---AV~~GG-G~~-HR~gLsd~ilIkdNHi~~~G~i~~ai~~~r~~~~~ 199 (289)
T PRK07896 125 TAAWVDAVAGTKAKIRDTRKTLPGLRALQKY---AVRCGG-GVN-HRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAPD 199 (289)
T ss_pred HHHHHHHhcCCCeEEEecCCCCCcchHHHHH---HHHhCC-Ccc-ccCCCcceeeecHHHHHHhCcHHHHHHHHHHhCCC
Confidence 4456666654444555444455666777765 677777 433 3789988776655442 22233333322 3
Q ss_pred cceEeeCCCCCCCHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 010948 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (497)
Q Consensus 151 iPVIaD~DtGYG~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiAR 230 (497)
.|+.|-.|+ .+ -+.+..++|++.|.+..- +++++ +.++...+..++...|-
T Consensus 200 ~kIeVEv~t----l~----ea~eal~~gaDiI~LDnm---------------~~e~v----k~av~~~~~~~~~v~ie-- 250 (289)
T PRK07896 200 LPCEVEVDS----LE----QLDEVLAEGAELVLLDNF---------------PVWQT----QEAVQRRDARAPTVLLE-- 250 (289)
T ss_pred CCEEEEcCC----HH----HHHHHHHcCCCEEEeCCC---------------CHHHH----HHHHHHHhccCCCEEEE--
Confidence 678777642 22 334456899999999543 23333 33333222113344333
Q ss_pred ccchhcccHHHHHHHHHHHHhcCCCEEEeccCC
Q 010948 231 TDSRQALSLEESLRRSRAFADAGADVLFIDALA 263 (497)
Q Consensus 231 TDA~~~~~ldeaIeRAkAY~eAGAD~IfIeg~~ 263 (497)
+.+ ++ .++...+|++.|+|.|-+-.+.
T Consensus 251 --aSG--GI--~~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 251 --SSG--GL--TLDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred --EEC--CC--CHHHHHHHHhcCCCEEEeChhh
Confidence 222 11 2577889999999999986653
No 497
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=80.07 E-value=68 Score=32.05 Aligned_cols=155 Identities=14% Similarity=0.010 Sum_probs=92.2
Q ss_pred HHHHHHHhCC--CceeecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHh---hcCcc
Q 010948 79 KSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIP 152 (497)
Q Consensus 79 ~~Lr~ll~~~--~~iv~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~r---a~~iP 152 (497)
+.++++.+.. -.+.+..-.+.-....+.++|++.+.+. +..-.. -. ..-..|.+|.++.+..+.+ ..+..
T Consensus 50 e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~---~~-~~~~~~~~~~~~~~~~~i~~a~~~G~~ 125 (259)
T cd07939 50 EAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIH---LA-HKLGKDRAWVLDQLRRLVGRAKDRGLF 125 (259)
T ss_pred HHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHH---HH-HHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 4566665532 2244433234444456667899988776 222110 01 1112567777665555443 34577
Q ss_pred eEeeCCCCCC-CHHHHHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 010948 153 VIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVART 231 (497)
Q Consensus 153 VIaD~DtGYG-~~~~V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiART 231 (497)
|.+.++..+. ++..+.+.++++.++|+..|.|=|.. | ...++++.+.++++++.- +.++-+=..
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~-----G------~~~P~~v~~lv~~l~~~~---~~~l~~H~H- 190 (259)
T cd07939 126 VSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTV-----G------ILDPFTTYELIRRLRAAT---DLPLEFHAH- 190 (259)
T ss_pred EEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCC-----C------CCCHHHHHHHHHHHHHhc---CCeEEEEec-
Confidence 7777777654 57889999999999999999999975 3 334566777777666542 212212122
Q ss_pred cchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 232 DSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 232 DA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
+.+--++.-+.+..++||+.|
T Consensus 191 -----n~~Gla~An~laAi~aG~~~v 211 (259)
T cd07939 191 -----NDLGLATANTLAAVRAGATHV 211 (259)
T ss_pred -----CCCChHHHHHHHHHHhCCCEE
Confidence 223345566777789999975
No 498
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=80.03 E-value=11 Score=35.60 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=51.3
Q ss_pred ecccCChHHHHHHHHhCCcEEEec-chhhhhhhcccCCCCCCCHHHHHHHHHHHHhhcCcceEeeCCCCCCCHHHHHHHH
Q 010948 93 GPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTV 171 (497)
Q Consensus 93 ~p~ayDalSAriae~aGfdAI~vS-G~avSas~lG~PD~g~ltldEml~~~r~I~ra~~iPVIaD~DtGYG~~~~V~rtV 171 (497)
++++.+...+..+...|++.+.+. +... ...|. ......++.+.+..++|+++|. | .. ..++
T Consensus 110 ~~~~~t~~e~~~~~~~~~d~v~~~~~~~~--~~~~~--------~~~~~~i~~~~~~~~~~i~~~G----G-I~--~~~i 172 (202)
T cd04726 110 LIGVEDPEKRAKLLKLGVDIVILHRGIDA--QAAGG--------WWPEDDLKKVKKLLGVKVAVAG----G-IT--PDTL 172 (202)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEEcCcccc--cccCC--------CCCHHHHHHHHhhcCCCEEEEC----C-cC--HHHH
Confidence 489999999988888899988774 2211 11221 1233455555554679999983 3 21 3457
Q ss_pred HHHHHhCccEEEecCC
Q 010948 172 KGYIKAGFAGIILEDQ 187 (497)
Q Consensus 172 k~l~~AGaAGI~IEDq 187 (497)
+++.++||+++-+--.
T Consensus 173 ~~~~~~Gad~vvvGsa 188 (202)
T cd04726 173 PEFKKAGADIVIVGRA 188 (202)
T ss_pred HHHHhcCCCEEEEeeh
Confidence 7888999999988543
No 499
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=79.92 E-value=10 Score=37.05 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHH
Q 010948 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (497)
Q Consensus 167 V~rtVk~l~~AGaAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRA 246 (497)
..+.++.+.+.|+..+|+=|-.... .++ .+....|+.+.+.. +.++.|.+-... .+++
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~-~~~---------~~~~~~i~~i~~~~---~~~l~v~GGi~~---------~~~~ 91 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAF-EGE---------RKNAEAIEKIIEAV---GVPVQLGGGIRS---------AEDA 91 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhh-cCC---------cccHHHHHHHHHHc---CCcEEEcCCcCC---------HHHH
Confidence 4566778889999999999864211 011 12344454444332 334444332221 3667
Q ss_pred HHHHhcCCCEEEecc--CCCHHHHHHHHHhCCCCCcc--cee-----eecCC-CCCCCC----HHHHHhcCCCEEeccc
Q 010948 247 RAFADAGADVLFIDA--LASKEEMKAFCEISPLVPKM--ANM-----LEGGG-KTPILN----PLELEELGFKLVAYPL 311 (497)
Q Consensus 247 kAY~eAGAD~IfIeg--~~s~eei~~i~~~v~~vP~~--~N~-----l~~~g-~tP~lt----~~eL~elGv~~Vsyp~ 311 (497)
+.+.++|||.|.+-. +.+++.+.++.+.++.--.+ +.+ ...+. .....+ .+++.++|+..+++..
T Consensus 92 ~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~ 170 (241)
T PRK13585 92 ASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTN 170 (241)
T ss_pred HHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 888889999998854 45667788888876421111 111 11110 001112 3667788999888744
No 500
>PRK09389 (R)-citramalate synthase; Provisional
Probab=79.90 E-value=24 Score=39.10 Aligned_cols=132 Identities=16% Similarity=0.094 Sum_probs=81.9
Q ss_pred HHHHHhCCcEEEecchhhhhhhcccCCCCCCCHHHHHHHHHHHHh---hcCcceEeeCCCCCC-CHHHHHHHHHHHHHhC
Q 010948 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAG 178 (497)
Q Consensus 103 riae~aGfdAI~vSG~avSas~lG~PD~g~ltldEml~~~r~I~r---a~~iPVIaD~DtGYG-~~~~V~rtVk~l~~AG 178 (497)
..+-++|.+.+.+.. .+|-. + .--.-..|.+|.++.+....+ ..+.-|.+++++++- ++.-+.+.++.+.++|
T Consensus 80 ~~a~~~g~~~v~i~~-~~Sd~-h-~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G 156 (488)
T PRK09389 80 DAALECDVDSVHLVV-PTSDL-H-IEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAG 156 (488)
T ss_pred HHHHhCCcCEEEEEE-ccCHH-H-HHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCC
Confidence 344457888866652 11100 0 011123678888887775544 346778889988765 5678889999999999
Q ss_pred ccEEEecCCCCCCCCCCCCCccccCHHHHHHHHHHHHHHHHhcCCCeEEEEeccchhcccHHHHHHHHHHHHhcCCCEE
Q 010948 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (497)
Q Consensus 179 aAGI~IEDq~~pKrCGH~~gk~lvp~ee~~~KIrAAv~Ar~~~g~dfvIiARTDA~~~~~ldeaIeRAkAY~eAGAD~I 257 (497)
+.-|+|-|.. | ...++++.+.++.+++.. +..+=+=.. +++.-|+.-+.+..+|||+.|
T Consensus 157 a~~i~l~DTv-----G------~~~P~~~~~lv~~l~~~~---~v~l~~H~H------ND~GlAvANalaAv~aGa~~V 215 (488)
T PRK09389 157 ADRICFCDTV-----G------ILTPEKTYELFKRLSELV---KGPVSIHCH------NDFGLAVANTLAALAAGADQV 215 (488)
T ss_pred CCEEEEecCC-----C------CcCHHHHHHHHHHHHhhc---CCeEEEEec------CCccHHHHHHHHHHHcCCCEE
Confidence 9999999976 3 334566767766665431 212222122 233445666777778888865
Done!