BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010949
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 119/322 (36%), Gaps = 37/322 (11%)
Query: 188 IKAIQAAVTLGTGCSLGPEGPSVDIGKSCANG-FSLMMENNRERKIXXXXXXXXXXXXXX 246
+K I TLG G LG EGP+V IG + + + E +
Sbjct: 130 VKFIGGMGTLGAGMVLGREGPTVQIGGNLGRMVLDVFRMRSAEARHTLLATGAAAGLSAA 189
Query: 247 XXXXVAGCFFAIETVLRPLRAENSPPFTTAMXXXXXXXXXXXXXXXXXXXXAFTVPSYDL 306
+AG F IE E P F + P ++
Sbjct: 190 FNAPLAGILFIIE--------EMRPQFRYNLISIKAVFTGVIMSSIVFRIFNGEAPIIEV 241
Query: 307 KSAAELP-----LYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPXXXXXX 361
++ P LYLILG++ GVV VF LV F V+
Sbjct: 242 GKLSDAPVNTLWLYLILGIIFGVVGPVFNSLVLRTQDMFQRFHGGEIKKWVLMGGAIGGL 301
Query: 362 XXXXXXRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGL 421
P GF N+ I G + + LL + +VV T LC SG GG+
Sbjct: 302 CGILGLIEPAAAGGGF-NLIPIAAAGNFS----VGLLLFIFITRVVTTLLCFSSGAPGGI 356
Query: 422 YAPSLMIXXXXXXXXXXXXXEIINSAIPGNVAVAEPQ------AYALVGMAATLASVCSV 475
+AP L + ++ +A AV PQ +A+ GM A +A+
Sbjct: 357 FAPMLALG------------TLLGTAFGMAAAVLFPQYHLEAGTFAIAGMGALMAASVRA 404
Query: 476 PLTSVLLLFELTRDYRILLPLM 497
PLT ++L+ E+T +Y+++LP++
Sbjct: 405 PLTGIVLVLEMTDNYQLILPMI 426
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 404 AKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAIPGNVAVAEPQAYALV 463
+ + T +C GSG +GG++AP L I + S IP EP A+
Sbjct: 331 GRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIP------EPAVMAIA 384
Query: 464 GMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
GM A +A+ PLT++LL E+T +Y ++LPL+
Sbjct: 385 GMGALVAATVRAPLTAILLTIEMTDNYFVILPLL 418
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 309 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 367
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 368 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 411
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 308 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 366
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 367 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 410
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 308 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 366
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 367 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 410
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 389 TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAI 448
TA + +L + A+V+ T LC SG GG++AP L + E+
Sbjct: 324 TAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQY- 382
Query: 449 PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
E +A+ GM A LA+ PLT ++L+ E+T +Y++ LP++
Sbjct: 383 -----HLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLWLPMI 426
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 405 KVVATALCKGSGLVGGLYAPSLMIXXXXXXXXXXXXXEIINSAIPGNVAVAEPQAYALVG 464
K + AL G L G++ PS +I + +AI P +YA+VG
Sbjct: 328 KFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIV-------PGSYAVVG 380
Query: 465 MAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
AA A V L+ +++FE+T R L+P++
Sbjct: 381 AAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVL 412
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,210,252
Number of Sequences: 62578
Number of extensions: 412156
Number of successful extensions: 831
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 74
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)