Query 010949
Match_columns 497
No_of_seqs 165 out of 1575
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:23:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01610 putative voltage-gate 100.0 6.6E-59 1.4E-63 490.6 40.1 377 88-497 2-391 (418)
2 PRK01862 putative voltage-gate 100.0 1.5E-56 3.3E-61 491.4 40.9 376 90-497 24-409 (574)
3 cd01033 ClC_like Putative ClC 100.0 4.3E-56 9.4E-61 465.6 37.6 368 98-497 1-373 (388)
4 COG0038 EriC Chloride channel 100.0 9.9E-54 2.1E-58 453.8 38.2 334 142-497 65-405 (443)
5 cd01031 EriC ClC chloride chan 100.0 9.2E-54 2E-58 450.5 37.0 368 97-497 1-378 (402)
6 cd03684 ClC_3_like ClC-3-like 100.0 4.5E-54 9.8E-59 457.4 34.5 372 98-497 1-414 (445)
7 PRK05277 chloride channel prot 100.0 3.4E-53 7.4E-58 450.6 39.7 376 92-497 2-391 (438)
8 cd00400 Voltage_gated_ClC CLC 100.0 1.7E-52 3.6E-57 438.4 39.4 367 98-497 1-376 (383)
9 PF00654 Voltage_CLC: Voltage 100.0 1.5E-53 3.2E-58 442.0 31.1 319 159-497 21-343 (355)
10 cd01034 EriC_like ClC chloride 100.0 3.6E-52 7.8E-57 436.6 36.0 358 102-497 1-370 (390)
11 PRK03655 putative ion channel 100.0 2.5E-50 5.4E-55 423.9 40.5 373 86-497 8-387 (414)
12 cd03682 ClC_sycA_like ClC sycA 100.0 2.9E-50 6.4E-55 420.5 38.8 349 94-497 2-361 (378)
13 cd01036 ClC_euk Chloride chann 100.0 2.9E-51 6.2E-56 432.9 30.8 353 98-497 1-397 (416)
14 cd03685 ClC_6_like ClC-6-like 100.0 1.2E-50 2.6E-55 433.2 33.9 360 88-497 30-429 (466)
15 cd03683 ClC_1_like ClC-1-like 100.0 4.4E-50 9.6E-55 424.8 31.0 359 92-497 3-394 (426)
16 KOG0475 Cl- channel CLC-3 and 100.0 8.1E-49 1.8E-53 410.7 17.0 324 165-497 153-503 (696)
17 KOG0474 Cl- channel CLC-7 and 100.0 4.5E-43 9.8E-48 366.6 20.3 382 89-497 86-541 (762)
18 KOG0476 Cl- channel CLC-2 and 100.0 1.6E-41 3.5E-46 360.4 6.4 389 91-497 96-545 (931)
19 cd01034 EriC_like ClC chloride 99.7 2E-16 4.2E-21 166.5 20.8 183 86-299 197-389 (390)
20 cd01033 ClC_like Putative ClC 99.7 8.1E-16 1.7E-20 161.7 18.0 177 87-292 201-386 (388)
21 PRK05277 chloride channel prot 99.6 5.6E-15 1.2E-19 157.7 19.1 189 87-300 213-411 (438)
22 PRK01610 putative voltage-gate 99.6 9.8E-15 2.1E-19 154.8 19.2 186 86-300 216-411 (418)
23 PRK01862 putative voltage-gate 99.6 1.7E-14 3.7E-19 159.0 19.1 187 86-301 234-430 (574)
24 cd03682 ClC_sycA_like ClC sycA 99.6 4.4E-14 9.5E-19 148.1 19.6 174 86-290 195-372 (378)
25 cd00400 Voltage_gated_ClC CLC 99.6 3.7E-14 8E-19 148.9 16.7 175 84-286 199-383 (383)
26 cd01031 EriC ClC chloride chan 99.5 3.4E-13 7.3E-18 142.6 18.5 186 86-300 202-398 (402)
27 COG0038 EriC Chloride channel 99.4 1.6E-11 3.6E-16 131.1 17.3 185 86-300 230-425 (443)
28 cd01036 ClC_euk Chloride chann 99.3 2.4E-11 5.2E-16 129.0 17.0 175 85-300 230-416 (416)
29 cd03685 ClC_6_like ClC-6-like 99.3 3.8E-11 8.2E-16 129.2 17.2 173 86-300 272-448 (466)
30 PF00654 Voltage_CLC: Voltage 99.3 3.5E-11 7.5E-16 125.3 16.1 182 85-291 158-355 (355)
31 cd03684 ClC_3_like ClC-3-like 99.3 7.9E-11 1.7E-15 126.1 16.3 191 86-300 202-434 (445)
32 PRK03655 putative ion channel 99.2 1.2E-09 2.7E-14 115.7 18.1 172 87-302 219-407 (414)
33 cd03683 ClC_1_like ClC-1-like 99.2 5.7E-10 1.2E-14 118.9 15.4 176 86-300 227-413 (426)
34 KOG0475 Cl- channel CLC-3 and 97.8 9.8E-05 2.1E-09 79.8 9.5 184 86-292 304-516 (696)
35 KOG0476 Cl- channel CLC-2 and 97.0 0.0037 8.1E-08 69.2 9.8 174 310-490 94-276 (931)
36 KOG0474 Cl- channel CLC-7 and 96.8 0.0019 4.1E-08 70.2 5.9 175 311-489 87-279 (762)
37 PRK09765 PTS system 2-O-a-mann 68.6 2.1E+02 0.0045 32.5 16.7 28 227-260 521-550 (631)
38 PRK10490 sensor protein KdpD; 66.7 40 0.00086 39.8 10.9 53 276-329 446-498 (895)
39 COG2205 KdpD Osmosensitive K+ 65.9 53 0.0012 38.0 11.1 74 246-326 419-492 (890)
40 PF01102 Glycophorin_A: Glycop 45.5 32 0.00069 30.5 4.1 17 313-329 66-82 (122)
41 TIGR02865 spore_II_E stage II 43.2 6E+02 0.013 29.6 19.8 30 309-338 112-141 (764)
42 COG5336 Uncharacterized protei 31.4 82 0.0018 27.4 4.2 38 210-247 56-93 (116)
43 PF15451 DUF4632: Domain of un 30.0 66 0.0014 24.8 3.1 37 12-49 8-44 (71)
44 PF13493 DUF4118: Domain of un 28.8 94 0.002 25.8 4.4 49 278-326 49-99 (105)
45 PF13807 GNVR: G-rich domain o 23.4 1.4E+02 0.003 24.0 4.3 27 83-109 54-80 (82)
46 COG4956 Integral membrane prot 21.5 6.6E+02 0.014 26.1 9.3 12 278-289 11-22 (356)
47 COG2610 GntT H+/gluconate symp 20.8 1.1E+03 0.024 25.6 12.1 30 193-222 49-78 (442)
48 PF10766 DUF2592: Protein of u 20.2 3E+02 0.0066 19.4 4.6 29 143-171 9-37 (41)
49 PF10749 DUF2534: Protein of u 20.0 3.8E+02 0.0082 22.1 5.8 60 269-332 11-71 (85)
No 1
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=6.6e-59 Score=490.60 Aligned_cols=377 Identities=25% Similarity=0.441 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH--------
Q 010949 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHG-------- 159 (497)
Q Consensus 88 ~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g-------- 159 (497)
.+++++++++|+++|+.+.+|++.+++++++.+....++ +....+...+| +++++|++||+++|+++.
T Consensus 2 ~~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~~~~ 77 (418)
T PRK01610 2 FRRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGS---LVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKFTQQ 77 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc---hhhcccccchH-HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 356678899999999999999999999987654322111 11001112244 567899999999888632
Q ss_pred ----HHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 010949 160 ----LLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALV 235 (497)
Q Consensus 160 ----~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~l~ 235 (497)
.++++++++.++ .++ .+..+.|++++++++++|+|+|||||++|+|++++++++|+++ ++++||.++
T Consensus 78 ~~~g~~~vi~av~~~g-----~~~---~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~~~~-~~~~~r~li 148 (418)
T PRK01610 78 RPHAPTDYMEALQTDG-----QFD---YAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFT-PRQEWKLWI 148 (418)
T ss_pred cCCCcHHHHHHHHcCC-----CCC---ccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhC-ChHHHHHHH
Confidence 234455554311 123 3345789999999999999999999999999999999999999 466677899
Q ss_pred HHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCc-cccccccCCCCchhhHHH
Q 010949 236 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQ-SAFTVPSYDLKSAAELPL 314 (497)
Q Consensus 236 ~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~-~~f~~~~~~~~~~~~l~~ 314 (497)
+||++||++++||||++|++|++|++.++++.+ .+.|+++++++++.+++.+.|.+ +.|.++....+++.++++
T Consensus 149 ~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~-----~~~p~~ias~~a~~v~~~~~g~~~~~~~i~~~~~~~~~~l~~ 223 (418)
T PRK01610 149 ACGAAAGMASAYHAPLAGSLFIAEILFGTLMLA-----SLGPVVISAVVALLTTNLLNGSDALLYNVQLSVTVQARDYAL 223 (418)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHcCCCCCeeecCCcCCCCHHHHHH
Confidence 999999999999999999999999998776544 35788999999999999988754 678888666667889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCCCch
Q 010949 315 YLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPG 394 (497)
Q Consensus 315 ~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~~~~ 394 (497)
++++|++||++|.+|++..++.++++++. +.++++++.++|+++|++.+++|+++++|++.++++++.+ +.
T Consensus 224 ~i~lGii~Gl~g~~f~~~~~~~~~~~~~~----~~~~~~~~~lggli~g~l~~~~p~~~G~G~~~i~~~~~~~-----~~ 294 (418)
T PRK01610 224 IISTGLLAGLCGPLLLTLMNASHRGFVSL----KLAPPWQLALGGLIVGLLSLFTPAVWGNGYSVVQSFLTAP-----PL 294 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccc----ccchhHHHHHHHHHHHHHHHHhhHHhCCcHHHHHHHHcCC-----hh
Confidence 99999999999999999999988777543 2455679999999999999999999999999988877543 33
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhh
Q 010949 395 IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS 474 (497)
Q Consensus 395 ~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r 474 (497)
...++.+.+.|+++|.+|+|+|++||+|+|++++|+++|..++.++.. .+|+. ...+..|+++||+|++++++|
T Consensus 295 ~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~----~~~~~--~~~~~~~a~vGmaA~laa~~~ 368 (418)
T PRK01610 295 LMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGL----WLPDG--EEITLLLGLTGMATLLAATTH 368 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH----hCCCc--ccchHHHHHHHHHHHHHHHHc
Confidence 455666778999999999999999999999999999999999987653 34542 134788999999999999999
Q ss_pred hHHHHHHHHHHHhcCccchhcCC
Q 010949 475 VPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 475 ~Plt~vvl~~Eltg~~~~llPlm 497 (497)
+|+|++++++|+||++++++|+|
T Consensus 369 aPltaivl~~Eltg~~~~~~p~~ 391 (418)
T PRK01610 369 APIMSTLMICEMTGEYQLLPGLL 391 (418)
T ss_pred cHHHHHHHHHHHhCCHhHHHHHH
Confidence 99999999999999999999875
No 2
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.5e-56 Score=491.37 Aligned_cols=376 Identities=31% Similarity=0.544 Sum_probs=314.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH---------
Q 010949 90 LLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGL--------- 160 (497)
Q Consensus 90 lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~--------- 160 (497)
+++.++++|+++|+++++|++++++.++++|...++. .. .....+|++++++|++||++++++..+
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g 98 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSF----VE-MAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGG 98 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH----HH-HhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 7788999999999999999999999999988643321 11 011246766788899999998877422
Q ss_pred -HHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhH
Q 010949 161 -LEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGA 239 (497)
Q Consensus 161 -~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~G~ 239 (497)
.+++++++... .....+..+.|++++++++++|+|+|||||++|+|+++|++++++++.++++++.+++||+
T Consensus 99 ~~~~~~~~~~~~-------~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~~~~~~r~l~~~G~ 171 (574)
T PRK01862 99 KTDYMEAVALGD-------GVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHFDPPRLRLLVACGA 171 (574)
T ss_pred cHHHHHHHHcCC-------CCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22333332110 1122334578999999999999999999999999999999999999988888888999999
Q ss_pred HHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHHHH
Q 010949 240 ASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILG 319 (497)
Q Consensus 240 aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illG 319 (497)
|||++++||||++|++|++|++.++++.+. ++|+++++++++.+++.+.|.++.|.+|..+.+++.++++++++|
T Consensus 172 aAglaa~F~aPl~g~lFa~E~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lG 246 (574)
T PRK01862 172 AAGITSAYNAPIAGAFFVAEIVLGSIAMES-----FGPLVVASVVANIVMREFAGYQPPYEMPVFPAVTGWEVLLFVALG 246 (574)
T ss_pred HHHHHHHhCCchHHHHHHHHHHhhhccHHH-----HHHHHHHHHHHHHHHHHHcCCCceeeCCCcCcCCHHHHHHHHHHH
Confidence 999999999999999999999987765543 577899999999999999999999999877667788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCCCchHHHHH
Q 010949 320 MLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLT 399 (497)
Q Consensus 320 ~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~~~~~~~l~ 399 (497)
++||++|.+|++.+.+.+++++++ +.+++++++++|+++|++.+++|+.+++|++.+++++++. ..+..++
T Consensus 247 v~~G~~~~~f~~~~~~~~~~~~~~----~~~~~~~~~~~gl~~g~l~~~~p~~~g~G~~~i~~~~~~~-----~~~~~l~ 317 (574)
T PRK01862 247 VLCGAAAPQFLRLLDASKNQFKRL----PVPLPVRLALGGLLVGVISVWVPEVWGNGYSVVNTILHAP-----WTWQALV 317 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCC-----chHHHHH
Confidence 999999999999999988876543 2455678899999999999999999999999999888653 2334566
Q ss_pred HHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhhhHHHH
Q 010949 400 QLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTS 479 (497)
Q Consensus 400 ~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r~Plt~ 479 (497)
.+++.|+++|.+|+|+|++||.|+|++++|+++|+++|.+++. .+|.. ..+|..|+++||+|++++++|+|+|+
T Consensus 318 ~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~----~~~~~--~~~~~~~a~vGmaa~~aa~~~aPlt~ 391 (574)
T PRK01862 318 AVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHA----LWPGH--TSAPFAYAMVGMGAFLAGATQAPLMA 391 (574)
T ss_pred HHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHH----hCCCc--ccchHHHHHHHHHHHHHHHHccHHHH
Confidence 6778999999999999999999999999999999999987653 34542 24677899999999999999999999
Q ss_pred HHHHHHHhcCccchhcCC
Q 010949 480 VLLLFELTRDYRILLPLM 497 (497)
Q Consensus 480 vvl~~Eltg~~~~llPlm 497 (497)
+++++|+|+++++++|+|
T Consensus 392 i~l~~Elt~~~~~~~P~~ 409 (574)
T PRK01862 392 ILMIFEMTLSYQVVLPLM 409 (574)
T ss_pred HHHHHHHhCCHhHHHHHH
Confidence 999999999999999976
No 3
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=4.3e-56 Score=465.61 Aligned_cols=368 Identities=29% Similarity=0.367 Sum_probs=303.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccc-
Q 010949 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQ- 176 (497)
Q Consensus 98 Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~~i~~~~~~~~~- 176 (497)
|+++|+.+..|++.+++.+++.+....++... .....+|++.+++|++||+++++.+...+ -.+++.++.+
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~ggl~~~l~~~~~~----~~g~gi~~v~~ 72 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLT----GVAAVSPIRRALSLTVGGLIAGLGWYLLR----RKGKKLVSIKQ 72 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchh----hhccCChHHHHHHHHHHHHHHHHHHHHHh----ccCCCcccHHH
Confidence 67899999999999999999987643211100 11123455678889999999998743321 0123333221
Q ss_pred ---ccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhHHHHHHhhhcchhhH
Q 010949 177 ---GFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAG 253 (497)
Q Consensus 177 ---g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~G~aAglaa~F~APl~g 253 (497)
+.+....+....|.+.+++++++|+|+|||||++|+|++++++++|+++.++++||.+++||++||++++||||++|
T Consensus 73 ~~~~~~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~aPlaG 152 (388)
T cd01033 73 AVRGKKRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDWLGLTVADRRLLVACAAGAGLAAVYNVPLAG 152 (388)
T ss_pred HhcCCCCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchHH
Confidence 11112223346799999999999999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010949 254 CFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLV 333 (497)
Q Consensus 254 ~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illG~~~Gl~g~~f~~~~ 333 (497)
++|++|+++++++.+ ...|+++++++++.+++.+.|+++.|.+++.+. ++.++++++++|++||+++.+|++.+
T Consensus 153 ~lFalE~~~~~~~~~-----~~~~~~~as~~a~~v~~~~~g~~~~f~~~~~~~-~~~~l~~~illGi~~Gl~~~lf~~~~ 226 (388)
T cd01033 153 ALFALEILLRTISLR-----SVVAALATSAIAAAVASLLKGDHPIYDIPPMQL-STPLLIWALLAGPVLGVVAAGFRRLS 226 (388)
T ss_pred HHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHHHhCCCCceeecCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876654 357789999999999999999999999887654 47889999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 010949 334 AWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCK 413 (497)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~~~~~~~l~~l~~~K~l~t~ls~ 413 (497)
.+.+|++++ . .+.++++.++|++++++..++|+.+++|++.++.++++.. +.+.++.+.+.|+++|.+|+
T Consensus 227 ~~~~~~~~~----~-~~~~~~~~l~gl~~g~~~~~~p~~~G~G~~~i~~~~~~~~-----~~~~ll~~~~~K~~~t~lt~ 296 (388)
T cd01033 227 QAARAKRPK----G-KRILWQMPLAFLVIGLLSIFFPQILGNGRALAQLAFSTTL-----TLSLLLILLVLKIVATLLAL 296 (388)
T ss_pred HHHHHHhcc----c-cchHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcCCc-----hHHHHHHHHHHHHHHHHHHH
Confidence 998876532 1 2345678899999999999999999999999998887642 34556778889999999999
Q ss_pred hcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc-Cccc
Q 010949 414 GSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR-DYRI 492 (497)
Q Consensus 414 gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r~Plt~vvl~~Eltg-~~~~ 492 (497)
|+|++||.|+|++++|+++|..++.+++. .+|+ .++..|+++||+|++++++|+|+|++++++|+|| +++.
T Consensus 297 gsG~~GG~f~P~l~iGa~~G~~~g~~~~~----~~p~----~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~ 368 (388)
T cd01033 297 RAGAYGGLLTPSLALGALLGALLGIVWNA----LLPP----LSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLF 368 (388)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHHH----hCCc----ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999987643 3454 4688999999999999999999999999999999 9999
Q ss_pred hhcCC
Q 010949 493 LLPLM 497 (497)
Q Consensus 493 llPlm 497 (497)
++|+|
T Consensus 369 l~Pl~ 373 (388)
T cd01033 369 LIPLM 373 (388)
T ss_pred HHHHH
Confidence 99986
No 4
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-54 Score=453.79 Aligned_cols=334 Identities=36% Similarity=0.593 Sum_probs=279.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccc----c-cccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHH
Q 010949 142 RILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQ----G-FDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSC 216 (497)
Q Consensus 142 ~~llip~~ggllvgl~~g~~~i~~~i~~~~~~~~~----g-~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~i 216 (497)
++.++|+.+|++++. ..+....++.++++++|.+ + ....+++..++|.+++.+++++|+|+|||||++|+|+++
T Consensus 65 ~~~l~~~~~gl~~g~-~~~~~~~p~~~g~Gi~~~i~a~~~~~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~ 143 (443)
T COG0038 65 LLPLVPALGGLLVGA-LLVYKFAPEARGSGIPQAIEALHGRKGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAI 143 (443)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhCccccCCChhHHHHHHhcCCCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHH
Confidence 456778888988883 1122222333333333221 1 112334566789999999999999999999999999999
Q ss_pred HHHHHhhhhcCHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHhccc-ccccCCCchHHHHHHHHHHHHHHHHHhhhCC
Q 010949 217 ANGFSLMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRP-LRAENSPPFTTAMIILASVISSTVSTVLLGT 295 (497)
Q Consensus 217 g~~l~~~~~~~~~~r~~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~-~~~~~~~~~~~~~~liasvia~~v~~~~~g~ 295 (497)
++.++++++.++++||.+++||+|||++++||||++|++|++|++++. ++.+ .+.|+++++++++.+.+.+.+.
T Consensus 144 g~~~~~~l~~~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~-----~l~p~~vaa~va~~v~~~~~~~ 218 (443)
T COG0038 144 GSLLGRLLKLSREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYR-----ALVPVLVAAVVALLVAGLFGGP 218 (443)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHH-----HHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999989899999999999999999999999999999999977 4443 4678999999999999999887
Q ss_pred ccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhcccccc
Q 010949 296 QSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYW 375 (497)
Q Consensus 296 ~~~f~~~~~~~~~~~~l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~ 375 (497)
++.+.++..+..+.++++.++++|+++|++|.+|.+.....+++++ |.+.+++++++++|++++++.+++|+.+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~l~g~~~l~~P~~lg~ 294 (443)
T COG0038 219 HFLLPIVTTPHMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFFR----RLPLPPLLRPALGGLLVGALGLLFPEVLGN 294 (443)
T ss_pred CceeeccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHHHHHHHhchhhhCC
Confidence 8888877766678899999999999999999999999977755544 444667889999999999999999999999
Q ss_pred chHHHHHHHhcCCCCCCchHHH-HHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCc
Q 010949 376 GFTNVEEILHTGKTASAPGIWL-LTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAV 454 (497)
Q Consensus 376 G~~~~~~~l~~~~~~~~~~~~~-l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~ 454 (497)
|++.++...+.+.. +. +..+++.|+++|.+|+|||++||+|+|++++|+++|.+++.+... .+|+. .
T Consensus 295 G~~~~~~~~~~~~~------~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~----~~~~~--~ 362 (443)
T COG0038 295 GYGLIQLALAGEGG------LLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGL----LFPPS--I 362 (443)
T ss_pred CccHHHHHHccCcc------HHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHh----hcCcc--c
Confidence 99998887766431 33 667889999999999999999999999999999999999987654 34542 2
Q ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchhcCC
Q 010949 455 AEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 455 ~~p~~~alvGmaa~la~v~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
.++..|+++||++++++++|+|+|++++++|||||+++++|+|
T Consensus 363 ~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll 405 (443)
T COG0038 363 LEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLL 405 (443)
T ss_pred cchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHH
Confidence 5778999999999999999999999999999999999999875
No 5
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=9.2e-54 Score=450.50 Aligned_cols=368 Identities=28% Similarity=0.446 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q 010949 97 LGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH----------GLLEILNQ 166 (497)
Q Consensus 97 ~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~----------g~~~i~~~ 166 (497)
+|+++|+++..|++.+++++++.+...+.. .+....|+.+.+++.+++++++++. |++++.+.
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~ 73 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFA-------ANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGV 73 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhc-------ccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHH
Confidence 488999999999999999999886521110 0011123334556777777777652 24555555
Q ss_pred hhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhHHHHHHhh
Q 010949 167 IKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASG 246 (497)
Q Consensus 167 i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~G~aAglaa~ 246 (497)
+++.. ++...+..+.|++++++++++|+|+|+|||++|+|+++|++++++++.++++++.+++|||+||++++
T Consensus 74 l~~~~-------~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~~~~~~~~l~~~g~aag~aa~ 146 (402)
T cd01031 74 LAGLL-------PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKTSPEERRQLIAAGAAAGLAAA 146 (402)
T ss_pred HcCCC-------CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHH
Confidence 54321 12223456899999999999999999999999999999999999999888888889999999999999
Q ss_pred hcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHHHHHHHHHHH
Q 010949 247 FNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVS 326 (497)
Q Consensus 247 F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illG~~~Gl~g 326 (497)
||||++|++|++|++.++++.+ ...|+++++++++++++.+.++++.|.++..+.+++.++++++++|++||++|
T Consensus 147 f~aPl~g~lf~~E~~~~~~~~~-----~~~~~~~a~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g 221 (402)
T cd01031 147 FNAPLAGVLFVLEELRHSFSPL-----ALLTALVASIAADFVSRLFFGLGPVLSIPPLPALPLKSYWLLLLLGIIAGLLG 221 (402)
T ss_pred hCCccHHHHHHHHHHHhhCCHH-----HHHHHHHHHHHHHHHHHHHcCCCceEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765443 35778999999999999999999999988777678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 010949 327 VVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKV 406 (497)
Q Consensus 327 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~~~~~~~l~~l~~~K~ 406 (497)
.+|++.+.+.++++++.+ +.++++++.+++++++++.++.|+.+++|++.++++.+++ .+...+..+++.|+
T Consensus 222 ~~f~~~~~~~~~~~~~~~---~~~~~~~~~l~gl~~~~~~~~~p~~~g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~ 293 (402)
T cd01031 222 YLFNRSLLKSQDLYRKLK---KLPRELRVLLPGLLIGPLGLLLPEALGGGHGLILSLAGGN-----FSISLLLLIFVLRF 293 (402)
T ss_pred HHHHHHHHHHHHHHHhcc---cCChhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCC-----chHHHHHHHHHHHH
Confidence 999999999988776542 2456778899999999999999999999999888777543 23456677888999
Q ss_pred HHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 010949 407 VATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFEL 486 (497)
Q Consensus 407 l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r~Plt~vvl~~El 486 (497)
++|.+|+++|++||+|+|++++|+++|+.+|.+++. .+|.. ..+|..|+++||+|++++++|+|+|++++++|+
T Consensus 294 ~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~----~~~~~--~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~El 367 (402)
T cd01031 294 IFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQ----LGPIP--ISAPATFAIAGMAAFFAAVVRAPITAIILVTEM 367 (402)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH----hcCcc--cccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999987654 34542 368999999999999999999999999999999
Q ss_pred hcCccchhcCC
Q 010949 487 TRDYRILLPLM 497 (497)
Q Consensus 487 tg~~~~llPlm 497 (497)
||++++++|+|
T Consensus 368 tg~~~~l~p~~ 378 (402)
T cd01031 368 TGNFNLLLPLM 378 (402)
T ss_pred hCCHhHHHHHH
Confidence 99999999976
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=4.5e-54 Score=457.40 Aligned_cols=372 Identities=22% Similarity=0.309 Sum_probs=295.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHh
Q 010949 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH----------GLLEILNQI 167 (497)
Q Consensus 98 Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~----------g~~~i~~~i 167 (497)
|+++|+++..++..++++.++... ..+|..+++++++++++++++. |+++++..+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l 65 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEG---------------YCNYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTIL 65 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHh---------------HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHH
Confidence 678899999999999988876522 0133334566777777777762 344444444
Q ss_pred hhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhh---cCHHHHHHHHHHhHHHHHH
Q 010949 168 KQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME---NNRERKIALVAAGAASGIA 244 (497)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~---~~~~~r~~l~~~G~aAgla 244 (497)
++... .+....+..+.|++++++++++|+|+|||||++|+|+++|++++|+++ .++++||++++||+|||++
T Consensus 66 ~g~~~-----~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~~~~~~r~li~~GaaAGla 140 (445)
T cd03684 66 SGFII-----RGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRRNEAKRREILSAAAAAGVA 140 (445)
T ss_pred cCccc-----cccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhhH
Confidence 32211 123335667899999999999999999999999999999999999874 5777888899999999999
Q ss_pred hhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhh----CCccccccccCCCCchhhHHHHHHHHH
Q 010949 245 SGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL----GTQSAFTVPSYDLKSAAELPLYLILGM 320 (497)
Q Consensus 245 a~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~----g~~~~f~~~~~~~~~~~~l~~~illG~ 320 (497)
++||||++|++|++||+.++++.+. .+++++++++++++++.+. +....|+++....+++.++++++++|+
T Consensus 141 AaF~APi~G~lFalE~l~~~~~~~~-----l~~~~~as~~a~~v~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~i~lGi 215 (445)
T cd03684 141 VAFGAPIGGVLFSLEEVSYYFPLKT-----LWRSFFCALVAAFTLKSLNPFGTGRLVLFEVEYDRDWHYFELIPFILLGI 215 (445)
T ss_pred HhcCCccchhhhhhHhhhhhccHHH-----HHHHHHHHHHHHHHHHHhcccCCCCceEEeccCCCCccHHHHHHHHHHHH
Confidence 9999999999999999988766654 5778999999999998762 333455555434456789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCC----------
Q 010949 321 LCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTA---------- 390 (497)
Q Consensus 321 ~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~---------- 390 (497)
+||++|.+|++.+.+++|++++.+. +.++++++.+++++++++.++.|+..++|++.+++++++....
T Consensus 216 ~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~~~g~~~i~~l~~~~~~~~~~~~~~~~~ 293 (445)
T cd03684 216 FGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTRLDMTELLELLFNECEPGDDNSLCCYRD 293 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHccchhhHHHHHHhcCCCccccccccccc
Confidence 9999999999999999998876541 2345778999999999999999999999999998887653110
Q ss_pred ----CC--chHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCC---------CCcc
Q 010949 391 ----SA--PGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGN---------VAVA 455 (497)
Q Consensus 391 ----~~--~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~---------~~~~ 455 (497)
+. ...+.++.+.+.|+++|.+|+++|++||+|+|++++|+++|++++.++..+. ..+|+. ....
T Consensus 294 ~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~ 372 (445)
T cd03684 294 PPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLA-YSYPDSIFFACCTAGPSCI 372 (445)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHH-hhCCcccccccccCCCCcc
Confidence 00 1235567788899999999999999999999999999999999999876532 113431 0125
Q ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchhcCC
Q 010949 456 EPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 456 ~p~~~alvGmaa~la~v~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
+|..|+++||+|++++++|+|+|++++++||||++++++|+|
T Consensus 373 ~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ 414 (445)
T cd03684 373 TPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLM 414 (445)
T ss_pred CchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHH
Confidence 789999999999999999999999999999999999999986
No 7
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=3.4e-53 Score=450.63 Aligned_cols=376 Identities=27% Similarity=0.423 Sum_probs=299.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHH---HHHHHHHHHHHHHHH----------
Q 010949 92 LIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRI---LLIPVTGGVIVGMMH---------- 158 (497)
Q Consensus 92 l~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---llip~~ggllvgl~~---------- 158 (497)
++++++|+++|+++..|++.+++++++++..... ....+|+.+ ++.+.+++++++++.
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~Gs 72 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLAS---------VADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGS 72 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 5789999999999999999999999987542110 011122221 223333333443331
Q ss_pred HHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc-CHHHHHHHHHH
Q 010949 159 GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-NRERKIALVAA 237 (497)
Q Consensus 159 g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~-~~~~r~~l~~~ 237 (497)
|++++...+++.. +....+..+.|++++++++++|+|+|+|||++|+|+++|++++++++. ++++++.+++|
T Consensus 73 Gi~~i~~~l~~~~-------~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~~~~~~~~li~~ 145 (438)
T PRK05277 73 GIPEIEGALEGLR-------PVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLRSDEARHTLLAA 145 (438)
T ss_pred CHHHHHHHHcCCC-------ccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 2444444443221 111134557899999999999999999999999999999999999987 77778889999
Q ss_pred hHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHH
Q 010949 238 GAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLI 317 (497)
Q Consensus 238 G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~il 317 (497)
|+|||++++||||++|++|++|++.++++++. ....|+++++++++.+++.+.++++.|+++..+..++.+++.+++
T Consensus 146 G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~---~~~~~~~~a~~~a~~v~~~~~g~~~~~~~~~~~~~~~~~l~~~i~ 222 (438)
T PRK05277 146 GAAAGLAAAFNAPLAGILFVIEEMRPQFRYSL---ISIKAVFIGVIMATIVFRLFNGEQAVIEVGKFSAPPLNTLWLFLL 222 (438)
T ss_pred HHHHhHHHhcCCchHHHHHHHHHHHhhccccH---HHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999876543321 125678899999999999999999999988776667889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCCCchHHH
Q 010949 318 LGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWL 397 (497)
Q Consensus 318 lG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~~~~~~~ 397 (497)
+|++||++|.+|++.+.+.++++++++.+...++++...++|++++++.+++|+..++|++.+++.++++. +...
T Consensus 223 lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~~g~G~~~i~~~~~~~~-----~~~~ 297 (438)
T PRK05277 223 LGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAAVGGGFNLIPIALAGNF-----SIGM 297 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHcCCc-----hHHH
Confidence 99999999999999999999887765432222333455678888899999999999999999998876542 3445
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhhhHH
Q 010949 398 LTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPL 477 (497)
Q Consensus 398 l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r~Pl 477 (497)
+..+.+.|+++|.+|+++|++||.|+|++++|+++|+.+|.+++. .+|.. ..+|..|+++||+|++++++|+|+
T Consensus 298 l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~----~~p~~--~~~~~~~a~~G~aA~la~~~~aPl 371 (438)
T PRK05277 298 LLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAA----LFPQY--HIEPGTFAIAGMGALFAATVRAPL 371 (438)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH----HcCcc--cccHHHHHHHHHHHHHHHHHHhHH
Confidence 667788999999999999999999999999999999999987654 35642 257899999999999999999999
Q ss_pred HHHHHHHHHhcCccchhcCC
Q 010949 478 TSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 478 t~vvl~~Eltg~~~~llPlm 497 (497)
|++++++|+||++++++|+|
T Consensus 372 t~~v~~~Eltg~~~~l~p~l 391 (438)
T PRK05277 372 TGIVLVLEMTDNYQLILPLI 391 (438)
T ss_pred HHHHHHHHHhCChhhHHHHH
Confidence 99999999999999999975
No 8
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=1.7e-52 Score=438.38 Aligned_cols=367 Identities=43% Similarity=0.667 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhh
Q 010949 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH---------GLLEILNQIK 168 (497)
Q Consensus 98 Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~---------g~~~i~~~i~ 168 (497)
|+++|+++.+|++++++.+++++...++... ....+|+++.+.|++++++++++. ++++++++++
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~ 74 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELA------AGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIA 74 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccc------cccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHH
Confidence 6789999999999999999998875543210 011244556788999998888763 2344555544
Q ss_pred hcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhHHHHHHhhhc
Q 010949 169 QSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFN 248 (497)
Q Consensus 169 ~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~G~aAglaa~F~ 248 (497)
+.. +....+..+.|++++++++++|+|+|+|||++|+|+++|++++++++.++++++.+++|||+||++++||
T Consensus 75 ~~~-------~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~~~~~~~~l~~~G~aaglaa~f~ 147 (383)
T cd00400 75 LGG-------GRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRLSRNDRRILVACGAAAGIAAAFN 147 (383)
T ss_pred hCC-------CCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 321 1222345689999999999999999999999999999999999999988777888999999999999999
Q ss_pred chhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHHHHHHHHHHHHH
Q 010949 249 AAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVV 328 (497)
Q Consensus 249 APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illG~~~Gl~g~~ 328 (497)
+|++|++|++|++.+++..+ ...|+++++++++++++.+.++++.|.++....+++.++++++++|++||++|.+
T Consensus 148 aPl~g~lf~~E~~~~~~~~~-----~~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~il~Gv~~g~~g~~ 222 (383)
T cd00400 148 APLAGALFAIEVLLGEYSVA-----SLIPVLLASVAAALVSRLLFGAEPAFGVPLYDPLSLLELPLYLLLGLLAGLVGVL 222 (383)
T ss_pred ChhHHHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHHHHcCCCCeeeCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765432 3577899999999999999999999988876667889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCCCchHHHHHHHHHHHHHH
Q 010949 329 FTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVA 408 (497)
Q Consensus 329 f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~~~~~~~l~~l~~~K~l~ 408 (497)
|++.+.+++|++++. +.++++++.+++++++++.++.|+..++|++++++..+++ .+...+..+.+.|+++
T Consensus 223 f~~~~~~~~~~~~~~----~~~~~~~~~i~gll~~~~~~~~p~~~g~G~~~~~~~~~~~-----~~~~~l~~~~~~K~~~ 293 (383)
T cd00400 223 FVRLLYKIERLFRRL----PIPPWLRPALGGLLLGLLGLFLPQVLGSGYGAILLALAGE-----LSLLLLLLLLLLKLLA 293 (383)
T ss_pred HHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHcCC-----hhHHHHHHHHHHHHHH
Confidence 999999998877643 3456788999999999999999999999999988776543 2344566778899999
Q ss_pred HHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Q 010949 409 TALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTR 488 (497)
Q Consensus 409 t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r~Plt~vvl~~Eltg 488 (497)
|.+|+++|++||.|+|++++|+++|+.++.++.. .+|.+ ..+|..++++||+|++++++|+|+|++++++|+||
T Consensus 294 t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~----~~~~~--~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg 367 (383)
T cd00400 294 TALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPA----LFPGL--VASPGAYALVGMAALLAAVLRAPLTAILLVLELTG 367 (383)
T ss_pred HHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH----hCCcc--cCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhC
Confidence 9999999999999999999999999999987754 34532 36899999999999999999999999999999999
Q ss_pred CccchhcCC
Q 010949 489 DYRILLPLM 497 (497)
Q Consensus 489 ~~~~llPlm 497 (497)
+++.++|+|
T Consensus 368 ~~~~l~p~~ 376 (383)
T cd00400 368 DYSLLLPLM 376 (383)
T ss_pred ChhhHHHHH
Confidence 999999975
No 9
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=1.5e-53 Score=442.02 Aligned_cols=319 Identities=38% Similarity=0.650 Sum_probs=258.9
Q ss_pred HHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcC-HHHHHHHHHH
Q 010949 159 GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENN-RERKIALVAA 237 (497)
Q Consensus 159 g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~-~~~r~~l~~~ 237 (497)
+++++++.+++... ....+..+.|++++++++++|+|+|||||++|+|++++++++|+++.+ ++++|.+++|
T Consensus 21 Gi~~v~~~~~~~~~-------~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~~ 93 (355)
T PF00654_consen 21 GIPEVKAALRGKSG-------RLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLAA 93 (355)
T ss_dssp SHHHHHHHCTTSS----------HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCC-------CCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHHH
Confidence 45566655554321 133456689999999999999999999999999999999999999954 4436669999
Q ss_pred hHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc-cccCCCCchhhHHHHH
Q 010949 238 GAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT-VPSYDLKSAAELPLYL 316 (497)
Q Consensus 238 G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~-~~~~~~~~~~~l~~~i 316 (497)
|++||++++||||++|++|++|++.++++.+. .+++++++++++++++.+.++++.|. +|+...+++.++++++
T Consensus 94 g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 168 (355)
T PF00654_consen 94 GAAAGLAAAFNAPLAGVLFALEELSRDFSVRL-----LLPALVASIVATLVSRLLFGNHPIFGSVPQLFPFSLWELPLFL 168 (355)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTT-----HHHHHHHHHHHHHHHHHHHTSS-SS---TT-----GGGHHHHH
T ss_pred HHHHHHHHHhcCCcccceehhheeeccccchh-----hHHHHHHHHHHHHHHHHHcCcCcccccccccccCCHHHHHHHH
Confidence 99999999999999999999999887776654 57789999999999999999999998 8876677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhcc--ccccchHHHHHHHhcCCCCCCch
Q 010949 317 ILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPG--ILYWGFTNVEEILHTGKTASAPG 394 (497)
Q Consensus 317 llG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~--~lg~G~~~~~~~l~~~~~~~~~~ 394 (497)
++|++||++|.+|++...++++++++.+ +++.++++++.++|++++++.+++|+ ++++|++.++++++++.. ...
T Consensus 169 llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~gl~~g~l~~~~p~~~~~g~G~~~i~~ll~~~~~--~~~ 245 (355)
T PF00654_consen 169 LLGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGGLVIGLLAFFFPEGSVLGSGYELIQSLLSGSPP--WFS 245 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHSSGG-SGSSSSTTHHHHHCTT------S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHHcCCcc--hhh
Confidence 9999999999999999999999988876 44455567999999999999999999 999999999999865421 245
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhh
Q 010949 395 IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS 474 (497)
Q Consensus 395 ~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r 474 (497)
.+.++.+.+.|+++|.+|+++|++||+|+|++++|+++|++++.+++. .+|+... .+|..|+++||+|++++++|
T Consensus 246 ~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~----~~~~~~~-~~~~~~al~G~~a~~~a~~~ 320 (355)
T PF00654_consen 246 LGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGS----FFPGISS-VDPGVYALVGMAAFLAAVTR 320 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHH----H-GGG-T--SHHHHHHHHTTHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHh----hCCCcCC-CchHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999999999987654 4565322 37999999999999999999
Q ss_pred hHHHHHHHHHHHhcCccchhcCC
Q 010949 475 VPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 475 ~Plt~vvl~~Eltg~~~~llPlm 497 (497)
+|+|++++++|+|||+++++|+|
T Consensus 321 ~Plt~~vl~~Eltg~~~~~~p~l 343 (355)
T PF00654_consen 321 APLTAIVLVLELTGDFQLLLPLL 343 (355)
T ss_dssp -HHHHHHHHHHHH--GGGHHHHH
T ss_pred hHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999975
No 10
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=3.6e-52 Score=436.64 Aligned_cols=358 Identities=29% Similarity=0.426 Sum_probs=290.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhcCc
Q 010949 102 GLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH---------GLLEILNQIKQSSS 172 (497)
Q Consensus 102 Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~---------g~~~i~~~i~~~~~ 172 (497)
|+++..|++++++++++..... . .++|+.+++.|+.+++++++++ |+++++++++....
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~p~~~~~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~ 68 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLT-----------A-THPWLPLLLTPAGFALIAWLTRRFFPGAAGSGIPQVIAALELPSA 68 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHH-----------H-hchHHHHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHccccc
Confidence 5678899999999998875311 1 1245445567888777777663 45666666654321
Q ss_pred ccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcC-HHHHHHHHHHhHHHHHHhhhcchh
Q 010949 173 LDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENN-RERKIALVAAGAASGIASGFNAAV 251 (497)
Q Consensus 173 ~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~-~~~r~~l~~~G~aAglaa~F~APl 251 (497)
..+. ++.+.+..+.|++++++++++|+|+|||||++|+|++++++++|+++.. +++|+.+++||++||++++||||+
T Consensus 69 ~~~~--~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~aPl 146 (390)
T cd01034 69 AARR--RLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWGGLSERGLILAGGAAGLAAAFNTPL 146 (390)
T ss_pred cccc--ccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHhHHHHhCCcc
Confidence 1011 2344556689999999999999999999999999999999999999874 677778999999999999999999
Q ss_pred hHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 010949 252 AGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTR 331 (497)
Q Consensus 252 ~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illG~~~Gl~g~~f~~ 331 (497)
+|++|++|++.++++.+. ..++++++++++++++.+.|+++.|.++..+..++.++++++++|++||++|.+|++
T Consensus 147 aG~lF~~E~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~illGii~G~~g~lF~~ 221 (390)
T cd01034 147 AGIVFAIEELSRDFELRF-----SGLVLLAVIAAGLVSLAVLGNYPYFGVAAVALPLGEAWLLVLVCGVVGGLAGGLFAR 221 (390)
T ss_pred hhHHHHHHHhhhhhhHHH-----HHHHHHHHHHHHHHHHHHcCCCCccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988765543 456788899999999999999999998876656788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-CCchhHHHHhHHHHHHHHHHHhc-cccccchHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHH
Q 010949 332 LVAWFTKSFDFIKEKF-GLPPVVCPALGGLGAGIIALRYP-GILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVAT 409 (497)
Q Consensus 332 ~~~~~~~~~~~~~~~~-~~~~~~~~~iggli~gll~~~~P-~~lg~G~~~~~~~l~~~~~~~~~~~~~l~~l~~~K~l~t 409 (497)
.+.+++|.+++.+++. ..++++++.++|++++++.+++| ...++|++.+++.++++.. .. ..+.+.|+++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~G~G~~~i~~~~~~~~~---~~----~~~~l~K~i~t 294 (390)
T cd01034 222 LLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLTFGTGYLQARAALEGGGG---LP----LWFGLLKFLAT 294 (390)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCccccCcHHHHHHHHhCCCc---cc----HHHHHHHHHHH
Confidence 9999988877654222 23455677788888888888776 6778899999988875431 11 23567999999
Q ss_pred HHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 010949 410 ALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRD 489 (497)
Q Consensus 410 ~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r~Plt~vvl~~Eltg~ 489 (497)
.+|+++|++||.|.|++++|+++|++++.++ +. .+|..|+++||+|++++++|+|+|++++++|+|++
T Consensus 295 ~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~--------~~----~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~ 362 (390)
T cd01034 295 LLSYWSGIPGGLFAPSLAVGAGLGSLLAALL--------GS----VSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGD 362 (390)
T ss_pred HHHHHcCCCcceechHHHHHHHHHHHHHHHh--------cC----CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 9999999999999999999999999998753 21 37889999999999999999999999999999999
Q ss_pred ccchhcCC
Q 010949 490 YRILLPLM 497 (497)
Q Consensus 490 ~~~llPlm 497 (497)
+++++|+|
T Consensus 363 ~~~l~p~l 370 (390)
T cd01034 363 QQMLLPLL 370 (390)
T ss_pred hhhHHHHH
Confidence 99999975
No 11
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=2.5e-50 Score=423.88 Aligned_cols=373 Identities=17% Similarity=0.218 Sum_probs=287.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILN 165 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~ 165 (497)
-..+++++++++|+++|+++++|++++++.++++|+..|+.. + ..+ ..+|| .+.+|.++|+++|++.... +
T Consensus 8 ~~~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~-~---~~~-~~~~~-~~~~~~~gGllvgll~~~~---~ 78 (414)
T PRK03655 8 TMLLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTL-G---IAQ-DSPLW-IIGMLTLTGIAVGLVIRFS---P 78 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-c---ccc-ccchH-HHHHHHHHHHHHHHHHHHc---C
Confidence 356788999999999999999999999999999998765321 0 011 12343 4567889999999984321 0
Q ss_pred HhhhcCcccccc--cccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhHHHHH
Q 010949 166 QIKQSSSLDRQG--FDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGI 243 (497)
Q Consensus 166 ~i~~~~~~~~~g--~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~G~aAgl 243 (497)
...++ .++.+. ......+....|++++++++++|+|+|||||++|+|++++++++|+++.+.++ +.++.||+|||+
T Consensus 79 ~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~~~~~~-~~l~~~gaAaGi 156 (414)
T PRK03655 79 GHAGP-DPATEPLIGAPVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNR-MDWTILASAGTI 156 (414)
T ss_pred CCCCC-hHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCCCh-hHHHHHHHHHHH
Confidence 00000 011000 01112244578999999999999999999999999999999999988533333 346789999999
Q ss_pred HhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHHHHHHHH
Q 010949 244 ASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCG 323 (497)
Q Consensus 244 aa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illG~~~G 323 (497)
+++||||++|++|++||+.+++..+.. .. ..+.++++++++.+++.+.+....|.++.++..++.++++++++|+++|
T Consensus 157 aAaFnaPLaG~lFa~E~l~~~~~~~~~-~~-~~~~v~aa~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lgi~~g 234 (414)
T PRK03655 157 GALFGTPVAAALIFSQTLNGSNEVPLW-DR-LFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAI 234 (414)
T ss_pred HHHhCchHHHHHHHHHHHHHhhhHHHH-HH-HHHHHHHHHHHHHHHHHhCCCCcceecCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999887653110 01 1233567777888888776544445566665567789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHh-ccccccchHHHHHHHhcCCCCCCchHHHHHHHH
Q 010949 324 VVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRY-PGILYWGFTNVEEILHTGKTASAPGIWLLTQLA 402 (497)
Q Consensus 324 l~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~-P~~lg~G~~~~~~~l~~~~~~~~~~~~~l~~l~ 402 (497)
++|.+|++...+++|++++. +.| +++..++|+++++++++. |.++++||+++++++++++ ...+.++.+.
T Consensus 235 l~G~lf~~~~~~~~~~~~~~----~~p-~~~~~lgGl~vg~l~l~~~~~~~g~Gy~~i~~~~~~~~----~~~~~ll~l~ 305 (414)
T PRK03655 235 AAGMVAVWCLPRLHALMHRL----KNP-VLVLGIGGFILGILGVIGGPLTLFKGLDEMQQMAANQA----FSASDYFLLA 305 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhc----ccc-hHHHHHHHHHHHHHHHHhCCccccCCHHHHHHHHhcCC----ccHHHHHHHH
Confidence 99999999998888776543 234 356789999999999885 6789999999998876632 3456677788
Q ss_pred HHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhh----hHHH
Q 010949 403 AAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCS----VPLT 478 (497)
Q Consensus 403 ~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r----~Plt 478 (497)
++|+++|.+|+++|++||+|+|++++|+++|..++.+ +|+ .++...++++|++++++++| +|+|
T Consensus 306 l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l--------~p~----~~~~~~v~~~m~a~la~vtr~p~~sp~t 373 (414)
T PRK03655 306 VVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH--------VPA----VPAAITVSCAILGIVLVVTRDGWLSLFM 373 (414)
T ss_pred HHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh--------ccC----CChHHHHHHHHHHHHHHHhccchhhHHH
Confidence 9999999999999999999999999999999888764 453 46788899999999999999 5999
Q ss_pred HHHHHHHHhcCccchhcCC
Q 010949 479 SVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 479 ~vvl~~Eltg~~~~llPlm 497 (497)
+++++.||| ++|+|
T Consensus 374 a~viv~em~-----~~~l~ 387 (414)
T PRK03655 374 AAVVVPDTT-----LLPLL 387 (414)
T ss_pred HHHHHhcch-----HHHHH
Confidence 999999999 66664
No 12
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=2.9e-50 Score=420.48 Aligned_cols=349 Identities=22% Similarity=0.315 Sum_probs=280.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 010949 94 GCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH--------GLLEILN 165 (497)
Q Consensus 94 ~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~--------g~~~i~~ 165 (497)
++++|+++|+++..|++.+++.+++.+. .+|. .+.+|..|.++..+.+ +.+++++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----------------~~~~-~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~ 64 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----------------HPWL-LPFLPLAGLLIGYLYQKFGKNSEKGNNLIIE 64 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhHH-HHHHHHHHHHHHHHHHHhCcccCCChHHHHH
Confidence 6899999999999999999999987542 1343 3445665544444432 3445555
Q ss_pred HhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhHHHHHHh
Q 010949 166 QIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIAS 245 (497)
Q Consensus 166 ~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~G~aAglaa 245 (497)
+++++. +..+.+..+.|++++.+++++|+|+|||||++|+|++++++++++++.+++++|.++++|++||+++
T Consensus 65 ~~~~~~-------~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~~~~~~r~l~~~g~aAglaa 137 (378)
T cd03682 65 EIHGPE-------EGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKLPEEDRRILLIAGIAAGFAA 137 (378)
T ss_pred HHHccC-------CCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 555321 1122345578999999999999999999999999999999999999988877778999999999999
Q ss_pred hhcchhhHHHHHHHHhc-ccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHHHHHHHHH
Q 010949 246 GFNAAVAGCFFAIETVL-RPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGV 324 (497)
Q Consensus 246 ~F~APl~g~lf~~E~~~-~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illG~~~Gl 324 (497)
+||||++|++|++|++. ++++.+ ...|+++++++++.+++.+...++.|.++.....++.++++++++|++||+
T Consensus 138 ~f~aPl~g~~f~~E~~~~~~~~~~-----~~~~~~i~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~Gi~~gl 212 (378)
T cd03682 138 VFGTPLAGAIFALEVLVLGRLRYS-----ALIPCLVAAIVADWVSHALGLEHTHYHIVFIPTLDPLLFVKVILAGIIFGL 212 (378)
T ss_pred HhCCcHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHhCCCCCccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999986 444332 356788999999999987666667677665444578899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHh--ccccccchHHHHHHHhcCCCCCCchHHHHHHHH
Q 010949 325 VSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRY--PGILYWGFTNVEEILHTGKTASAPGIWLLTQLA 402 (497)
Q Consensus 325 ~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~--P~~lg~G~~~~~~~l~~~~~~~~~~~~~l~~l~ 402 (497)
+|.+|++.+++.++++++. +.+.++++.++|++++++.++. |...+.|++.+++.+.+++ ... ...
T Consensus 213 ~g~~f~~~~~~~~~~~~~~----~~~~~~~~~iggl~~g~~~~~~~~~~~~G~g~~~i~~~~~~~~----~~~----~~~ 280 (378)
T cd03682 213 AGRLFAELLHFLKKLLKKR----IKNPYLRPFVGGLLIILLVYLLGSRRYLGLGTPLIEDSFFGGT----VYP----YDW 280 (378)
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHhcCC----chH----HHH
Confidence 9999999999998887543 2345678999999999988775 4567899988887333332 111 235
Q ss_pred HHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Q 010949 403 AAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLL 482 (497)
Q Consensus 403 ~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r~Plt~vvl 482 (497)
+.|+++|.+|+++|++||+|+|++++|+++|+.++++++ .++..++++||+|++++++|+|+|++++
T Consensus 281 l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~-------------~~~~~~~~~Gmaa~laa~~raPlt~ivl 347 (378)
T cd03682 281 LLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG-------------LPVSLLAALGFVAVFAGATNTPLACIIM 347 (378)
T ss_pred HHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 799999999999999999999999999999999987531 2567899999999999999999999999
Q ss_pred HHHHhcCccchhcCC
Q 010949 483 LFELTRDYRILLPLM 497 (497)
Q Consensus 483 ~~Eltg~~~~llPlm 497 (497)
++|+|| ++.++|+|
T Consensus 348 ~~Eltg-~~~~~p~~ 361 (378)
T cd03682 348 GIELFG-AENAPYFF 361 (378)
T ss_pred HHHHhC-ccchHHHH
Confidence 999999 56777764
No 13
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=2.9e-51 Score=432.85 Aligned_cols=353 Identities=25% Similarity=0.303 Sum_probs=270.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHh
Q 010949 98 GLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----------HGLLEILNQI 167 (497)
Q Consensus 98 Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~----------~g~~~i~~~i 167 (497)
|+++|+++..|+.++++.+++......+.. .+....|..+.+.|+.++++++++ .|++|++..+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l 74 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIP------GSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYL 74 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 567788888888888887776532211100 000112322455667666665554 2455555544
Q ss_pred hhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhh-------------cCHHHHHHH
Q 010949 168 KQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME-------------NNRERKIAL 234 (497)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~-------------~~~~~r~~l 234 (497)
++... .++...+..+.|++++++++++|+|+|||||++|+|++++++++++++ .++++|+++
T Consensus 75 ~g~~~-----~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~l 149 (416)
T cd01036 75 NGVHL-----PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDF 149 (416)
T ss_pred cCCcc-----cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHH
Confidence 43211 133445667899999999999999999999999999999999998654 356677789
Q ss_pred HHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc--------------
Q 010949 235 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT-------------- 300 (497)
Q Consensus 235 ~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~-------------- 300 (497)
++||+|||++++||||++|++|++|++.++++.+. .+++++++++++.+++.+.+..+.+.
T Consensus 150 l~aGaaAGlaAaF~APiaGvlFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (416)
T cd01036 150 LVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRL-----AWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTV 224 (416)
T ss_pred HHHHhhcchhhccCCcceeeeeeeHHhhccccHHH-----HHHHHHHHHHHHHHHHHhccccCCccccccccccceeccc
Confidence 99999999999999999999999999988766543 57788999999999998876554332
Q ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhHHHHhHHHHHHHHHHHhccccccchHH
Q 010949 301 VPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEK-FGLPPVVCPALGGLGAGIIALRYPGILYWGFTN 379 (497)
Q Consensus 301 ~~~~~~~~~~~l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~ 379 (497)
++....+++.++++++++|++||++|.+|++.+.++++++++.+++ .+.++++++.+++++++++.+
T Consensus 225 ~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------ 292 (416)
T cd01036 225 FELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY------------ 292 (416)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH------------
Confidence 2222334678999999999999999999999999999887765321 234456788888888877653
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCC------CC
Q 010949 380 VEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGN------VA 453 (497)
Q Consensus 380 ~~~~l~~~~~~~~~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~------~~ 453 (497)
...++.+.+.|+++|.+|+++|+|||+|+|++++|+++|++++.++..+ +|+. ..
T Consensus 293 ---------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~----~~~~~~~~~~~~ 353 (416)
T cd01036 293 ---------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRI----AVAGIGAESATL 353 (416)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH----ccccccccccCC
Confidence 1345567788999999999999999999999999999999999877554 3421 11
Q ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchhcCC
Q 010949 454 VAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 454 ~~~p~~~alvGmaa~la~v~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
..+|..|+++||+|++++++|+|+|++++++|||||+++++|+|
T Consensus 354 ~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ 397 (416)
T cd01036 354 WADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLM 397 (416)
T ss_pred ccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHH
Confidence 36889999999999999999999999999999999999999986
No 14
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=1.2e-50 Score=433.19 Aligned_cols=360 Identities=23% Similarity=0.329 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH------
Q 010949 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGT---PNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH------ 158 (497)
Q Consensus 88 ~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~------ 158 (497)
+..+.+++++|+++|+++.+|++++++++++..... ..+. .....|..++.++++++++++++.
T Consensus 30 ~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~li~~~l~~~~~p~ 102 (466)
T cd03685 30 FLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKG-------RLFTAFLVYLGLNLVLVLVAALLVAYIAPT 102 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------chHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 445567799999999999999999999998864321 0000 011123334567788888887762
Q ss_pred ----HHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhh-----------
Q 010949 159 ----GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLM----------- 223 (497)
Q Consensus 159 ----g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~----------- 223 (497)
|++++...+++... .+....+..+.|++++++++++|+|+|||||++|+|+++|++++++
T Consensus 103 a~GsGip~v~~~l~g~~~-----~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~ 177 (466)
T cd03685 103 AAGSGIPEVKGYLNGVKI-----PHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRW 177 (466)
T ss_pred cCCCCHHHHHHHHcCcCc-----cccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhh
Confidence 34555554442111 1122345568999999999999999999999999999999999973
Q ss_pred hh--cCHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhh---CC--c
Q 010949 224 ME--NNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL---GT--Q 296 (497)
Q Consensus 224 ~~--~~~~~r~~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~---g~--~ 296 (497)
++ .++++||++++||+|||++++||||++|++|++||+.++++.+.. ++.++++++++.+++.+. +. .
T Consensus 178 ~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~-----~~~l~~s~ias~va~~~~~~~~~~~~ 252 (466)
T cd03685 178 FRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALT-----WRTFFSSMIVTFTLNFFLSGCNSGKC 252 (466)
T ss_pred hhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHH-----HHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 22 255667789999999999999999999999999999877665432 334444454444444321 11 1
Q ss_pred ccc--------cccc-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHH
Q 010949 297 SAF--------TVPS-YDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIAL 367 (497)
Q Consensus 297 ~~f--------~~~~-~~~~~~~~l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~ 367 (497)
+.| ..+. ...+++.++++++++|++||++|.+|++.+.++++++++.+++ +++.+. +.+++++++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~---~~~~~~-l~~~lv~~~~~ 328 (466)
T cd03685 253 GLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHK---GKLLKV-LEALLVSLVTS 328 (466)
T ss_pred cccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cchhHH-HHHHHHHHHHH
Confidence 222 2221 2235678999999999999999999999999998887654321 222232 33344333322
Q ss_pred HhccccccchHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhh
Q 010949 368 RYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSA 447 (497)
Q Consensus 368 ~~P~~lg~G~~~~~~~l~~~~~~~~~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~ 447 (497)
.++. ...+..+.+.|+++|.+|+++|++||+|+|++++|+++|+++|.++..+
T Consensus 329 ~~~~-----------------------~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~---- 381 (466)
T cd03685 329 VVAF-----------------------PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSY---- 381 (466)
T ss_pred HHHH-----------------------HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHH----
Confidence 2211 1234456678999999999999999999999999999999999877543
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchhcCC
Q 010949 448 IPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 448 ~p~~~~~~~p~~~alvGmaa~la~v~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
+|.. ..+|..|+++||+|++++++|+|+|++++++|+||++++++|+|
T Consensus 382 ~~~~--~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l~pl~ 429 (466)
T cd03685 382 FGFT--SIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIM 429 (466)
T ss_pred cccc--CCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhHHHHH
Confidence 3422 36889999999999999999999999999999999999999986
No 15
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=4.4e-50 Score=424.84 Aligned_cols=359 Identities=24% Similarity=0.332 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH----------HHH
Q 010949 92 LIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH----------GLL 161 (497)
Q Consensus 92 l~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~----------g~~ 161 (497)
++.+++|+++|+++..++..++++.++......+.. .+...+|..+++.|+.++++++++. |++
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp 76 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLT------GNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIP 76 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHH
Confidence 356789999999999999999988876532111000 0001123444677888787777762 344
Q ss_pred HHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhh------cCHHHHHHHH
Q 010949 162 EILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME------NNRERKIALV 235 (497)
Q Consensus 162 ~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~------~~~~~r~~l~ 235 (497)
|+...+++... .+....+..+.|++++++++++|+|+|||||++|+|+++++.++|+++ .++++|+.++
T Consensus 77 ~v~~~l~g~~~-----~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li 151 (426)
T cd03683 77 EMKTILRGVVL-----PEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGIYENESRRMEML 151 (426)
T ss_pred HHHHHHcCCCc-----cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccCHHHHHHHH
Confidence 55444443211 123335666889999999999999999999999999999999999874 3566777899
Q ss_pred HHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhh----CCccc---ccccc--CCC
Q 010949 236 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL----GTQSA---FTVPS--YDL 306 (497)
Q Consensus 236 ~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~----g~~~~---f~~~~--~~~ 306 (497)
+||+|||++++||||++|++|++|++.++++.+. .++++++|++++.+++.+. +.++. |..+. ...
T Consensus 152 ~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~-----~~~~~i~s~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (426)
T cd03683 152 AAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRN-----YWRGFFAATCGAFTFRLLAVFFSDQETITALFKTTFFVDFP 226 (426)
T ss_pred HhHhhhhhHHhcCCcceeeEEEeehhhhhccHHH-----HHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccCCCC
Confidence 9999999999999999999999999988776543 4678889999988877653 23332 32221 223
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h-cCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHH
Q 010949 307 KSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKE--K-FGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEI 383 (497)
Q Consensus 307 ~~~~~l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~--~-~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~ 383 (497)
++..++++++++|++||++|.+|++.+.++++++++.++ + .+.++++++.+++++++++. +|
T Consensus 227 ~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~--~p------------- 291 (426)
T cd03683 227 FDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLT--FP------------- 291 (426)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHH--HH-------------
Confidence 467899999999999999999999999999887665432 1 22355678888888777643 34
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCC-----CCCccchH
Q 010949 384 LHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPG-----NVAVAEPQ 458 (497)
Q Consensus 384 l~~~~~~~~~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~-----~~~~~~p~ 458 (497)
...+..+.+.|+++|.+|+++|++||+|+|++++|+++|+++|.+++.+ +|+ +....+|.
T Consensus 292 -----------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~----~p~~~~~~~~~~~~~~ 356 (426)
T cd03683 292 -----------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVL----FPEGIRGGISNPIGPG 356 (426)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHH----cCcccccCCCCCcCch
Confidence 1345567789999999999999999999999999999999999877543 451 01235789
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchhcCC
Q 010949 459 AYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 459 ~~alvGmaa~la~v~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
.|+++||+|++++++|+|.|+ ++++||||++++++|+|
T Consensus 357 ~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ 394 (426)
T cd03683 357 GYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVL 394 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHH
Confidence 999999999999999998876 59999999999999986
No 16
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-49 Score=410.74 Aligned_cols=324 Identities=28% Similarity=0.373 Sum_probs=266.4
Q ss_pred HHhhhcCccccccc-------ccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhh---cCHHHHHHH
Q 010949 165 NQIKQSSSLDRQGF-------DLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME---NNRERKIAL 234 (497)
Q Consensus 165 ~~i~~~~~~~~~g~-------~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~---~~~~~r~~l 234 (497)
+...++++++.+.+ .|+....+..|.++..+++++|.|+|+|||+||++.++|+.++++|+ .+...+|.+
T Consensus 153 P~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~rei 232 (696)
T KOG0475|consen 153 PYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREI 232 (696)
T ss_pred hhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHH
Confidence 44556666665432 24444567899999999999999999999999999999999999987 345566678
Q ss_pred HHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhh---hCCccc-cccccCCCCchh
Q 010949 235 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL---LGTQSA-FTVPSYDLKSAA 310 (497)
Q Consensus 235 ~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~---~g~~~~-f~~~~~~~~~~~ 310 (497)
.++.+|||++++||||++|++|++|++...+.. -+.|..+.++.+|..+.+.+ .+.++. |.+.....|+..
T Consensus 233 lsAaaAaGvavaFgAPIGGVlFslEev~~~fp~-----ktlw~sff~aLsAv~~L~~i~pf~~~~~vLf~V~Y~~~W~~~ 307 (696)
T KOG0475|consen 233 LSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPL-----KTLWRSFFCALSAVTALRSINPFGNSRLVLFYVDYDRPWSLF 307 (696)
T ss_pred HHHHhhccchhhcCCccceeeeehhhhhhcCCc-----cchHHHHHHHHHHHHHHeeecccCCCceEEEEEeccCCcccc
Confidence 889999999999999999999999998844432 24566777777777777755 233444 455555567899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCC
Q 010949 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTA 390 (497)
Q Consensus 311 ~l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~ 390 (497)
|++.|+++|++||+.|.+|.|++.++.+++|.. +...++++-+.+.+++++++++..|.+..+++..++++++.....
T Consensus 308 EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~--~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~ 385 (696)
T KOG0475|consen 308 ELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS--KLGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPS 385 (696)
T ss_pred cchHHHHHHHhhhHHHHHHHHHHHHHHhccchh--hccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCc
Confidence 999999999999999999999999999877654 344556677888899999999999999999999999998874332
Q ss_pred CCch---------HHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCC----CCCccch
Q 010949 391 SAPG---------IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPG----NVAVAEP 457 (497)
Q Consensus 391 ~~~~---------~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~----~~~~~~p 457 (497)
+... .|.|+..+++|+++|..|+|++.|+|+|.||+++||..|+++|.+...++.. |+ ....+.|
T Consensus 386 ~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~--~~~~~fg~~ci~P 463 (696)
T KOG0475|consen 386 SSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQN--PDFNLFGLSCATP 463 (696)
T ss_pred ccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcC--CCccccchhhcCc
Confidence 2222 5788889999999999999999999999999999999999999766554431 21 1246799
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchhcCC
Q 010949 458 QAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 458 ~~~alvGmaa~la~v~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
+.|+++||||.++|+||.|+|.+||+||+||++++++|+|
T Consensus 464 g~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm 503 (696)
T KOG0475|consen 464 GAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLM 503 (696)
T ss_pred hHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHH
Confidence 9999999999999999999999999999999999999997
No 17
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-43 Score=366.58 Aligned_cols=382 Identities=24% Similarity=0.345 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHH---HH---HH-HHHHHHHHHHHHHHH
Q 010949 89 ALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHR---IL---LI-PVTGGVIVGMMHGLL 161 (497)
Q Consensus 89 ~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~l---li-p~~ggllvgl~~g~~ 161 (497)
.-|.+++++|+++|+++...+..++.+..+++...-+.... -+.++ ...|.. ++ ++ .+++.+++.
T Consensus 86 ~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~-~~s~~-g~~~~~~l~~~g~Nl~lv~~as~lv~------ 157 (762)
T KOG0474|consen 86 VKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEE-CRSQK-GCLALSLLVLLGFNLVLVFLASVLVA------ 157 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH-hhhcc-ccHHHHHHHHHHHhHHHHHHHHHHHH------
Confidence 34557899999999999999999988777654321100000 00000 001110 00 01 111222222
Q ss_pred HHHHHhhhcCccccc----ccc---cccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHh------------
Q 010949 162 EILNQIKQSSSLDRQ----GFD---LVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSL------------ 222 (497)
Q Consensus 162 ~i~~~i~~~~~~~~~----g~~---~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~------------ 222 (497)
.+.+...++++||.| |++ ....++++.|+++.+.++++|+.+|+|||++|.|+++|+.+++
T Consensus 158 ~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~ 237 (762)
T KOG0474|consen 158 YIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRW 237 (762)
T ss_pred eechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhh
Confidence 234556667777655 332 2345677899999999999999999999999999999999983
Q ss_pred --hhhcCHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhh-----hCC
Q 010949 223 --MMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL-----LGT 295 (497)
Q Consensus 223 --~~~~~~~~r~~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~-----~g~ 295 (497)
.|++|+|+|+ ++.||+|||++|+|+||++|++|++||...-|+. ..+|.++.++.++.++-+.+ .|.
T Consensus 238 fr~FrnDrdrRD-~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq-----~L~WR~fFss~i~~f~l~~~i~~~~~G~ 311 (762)
T KOG0474|consen 238 FRYFRNDRDRRD-LVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQ-----ALLWRTFFSSAIVAFVLRAFILSCLSGK 311 (762)
T ss_pred hhhhcccchhhh-hhhcchHHhHHHHhCCCccceEEEechhhHHHHh-----hHHHHHHHHhHHHHHhHHHHHHHHhcCc
Confidence 4667788777 8999999999999999999999999998876543 34788889988888877732 232
Q ss_pred cccc------ccccC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHH
Q 010949 296 QSAF------TVPSY---DLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIA 366 (497)
Q Consensus 296 ~~~f------~~~~~---~~~~~~~l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~ 366 (497)
-..| .+..+ ...+..|++.++++|++.|++|++|++++.+..+++++ .+|.+.-+++...+..++++.++
T Consensus 312 ~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~a 390 (762)
T KOG0474|consen 312 CGLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLA 390 (762)
T ss_pred hhccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHH
Confidence 2222 22222 13467899999999999999999999998777766554 22322223333333344444444
Q ss_pred HHhccc------------------c--ccchHHH------------HHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010949 367 LRYPGI------------------L--YWGFTNV------------EEILHTGKTASAPGIWLLTQLAAAKVVATALCKG 414 (497)
Q Consensus 367 ~~~P~~------------------l--g~G~~~~------------~~~l~~~~~~~~~~~~~l~~l~~~K~l~t~ls~g 414 (497)
+..|.. . -+-|+++ ++++|+.. .+.+...|+++++..+++++.|+|
T Consensus 391 f~l~~l~~C~P~~~~~~~~~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~--~ef~~~tL~iFfv~yf~L~~~TfG 468 (762)
T KOG0474|consen 391 FGLPFLADCQPCPPSITEGQCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPT--NEFGILTLAIFFVLYFFLACWTFG 468 (762)
T ss_pred hhhHHHhcCCCCCCCcccccCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCC--CccchhHHHHHHHHHHHHHHHHhc
Confidence 444311 0 0123333 34444331 345567788899999999999999
Q ss_pred cCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchh
Q 010949 415 SGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILL 494 (497)
Q Consensus 415 sG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v~r~Plt~vvl~~Eltg~~~~ll 494 (497)
...|.|+|.|++.+||+.|+++|..+.... ..+|+.||++|+||+++|++|++++.++|++|.| +..+.+
T Consensus 469 i~vpsGlFiP~iL~GAa~GRlvg~~l~~~~---------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~l 538 (762)
T KOG0474|consen 469 IAVPSGLFIPVILTGAAYGRLVGMLLGSYT---------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLL 538 (762)
T ss_pred ccccccchhHHHHhhHHHHHHHHHHHHHhh---------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhh
Confidence 999999999999999999999999887754 2689999999999999999999999999999999 777889
Q ss_pred cCC
Q 010949 495 PLM 497 (497)
Q Consensus 495 Plm 497 (497)
|+|
T Consensus 539 PiM 541 (762)
T KOG0474|consen 539 PIM 541 (762)
T ss_pred HHH
Confidence 987
No 18
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=360.38 Aligned_cols=389 Identities=23% Similarity=0.308 Sum_probs=280.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010949 91 LLIGCLLGLASGLCVAFFNKGVHIIHE---WAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQI 167 (497)
Q Consensus 91 ll~~il~Gv~~Gl~a~~f~~~i~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~~i 167 (497)
|.+.+++|++++++++.+.+.+...++ |++...-.. +.-..|..|...|+.--+..+.. ..-+.+|.
T Consensus 96 W~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~--------~~yl~yl~Wv~y~v~Li~fSA~f--~h~iapQA 165 (931)
T KOG0476|consen 96 WFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSS--------HSYLAYLSWVGYPVGLVLFSAGF--CHYIAPQA 165 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHHHHHHH--Hheecccc
Confidence 346789999999999999999987655 333321110 00011222222233211111111 23456788
Q ss_pred hhcCccccccc-------ccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhh-------cCHHHHHH
Q 010949 168 KQSSSLDRQGF-------DLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME-------NNRERKIA 233 (497)
Q Consensus 168 ~~~~~~~~~g~-------~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~-------~~~~~r~~ 233 (497)
.+|++|++|.+ +|++.++++.|.++-.+++|+|+++|+|||.+|+++.+++.+++... .|+.++..
T Consensus 166 vGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~~enesR~~E 245 (931)
T KOG0476|consen 166 VGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGFFENESRNME 245 (931)
T ss_pred ccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhccccccCcchHHH
Confidence 88999887742 78888999999999999999999999999999999999999988754 45666778
Q ss_pred HHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhh---C-Cc----cccc--ccc
Q 010949 234 LVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLL---G-TQ----SAFT--VPS 303 (497)
Q Consensus 234 l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~---g-~~----~~f~--~~~ 303 (497)
+.++|+|-|++..|.||++|++|.+|++..+|..+| .|+.+.|+..+.+++|.+. - .+ .+|+ ++.
T Consensus 246 mLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrn-----YWRGFFAAtcsA~vFR~lavf~v~~~~tItA~yqT~F~~ 320 (931)
T KOG0476|consen 246 MLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRN-----YWRGFFAATCSAFVFRLLAVFFVEAEVTITALYQTSFRP 320 (931)
T ss_pred HHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHH-----HHHHHHHHHhHHHHHHHHHHHcccchhhhHHHHhccCCC
Confidence 899999999999999999999999999999998887 4778899999999988653 2 11 2332 333
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhcCCchhHHHHhHHHHHHHHHHHhcccccc---c-
Q 010949 304 YDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKS---FDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYW---G- 376 (497)
Q Consensus 304 ~~~~~~~~l~~~illG~~~Gl~g~~f~~~~~~~~~~---~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~---G- 376 (497)
...++.+|+|+|+++|++||++|++|+++.+.+.-+ .|..+.-+...+++.+++..++++. +.+|.-+|. |
T Consensus 321 d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ss--ltfP~GlG~f~aG~ 398 (931)
T KOG0476|consen 321 DFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSS--LTFPPGLGQFLAGR 398 (931)
T ss_pred CCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhh--eecCCccccccccc
Confidence 334678999999999999999999999886643211 1111111223345666665554443 446654442 1
Q ss_pred ---hHHHHHHHhcCC-------C-CCC--------------chHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHH
Q 010949 377 ---FTNVEEILHTGK-------T-ASA--------------PGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAA 431 (497)
Q Consensus 377 ---~~~~~~~l~~~~-------~-~~~--------------~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~ 431 (497)
.+++.+++++.. + ..+ ..+..|.++.+.||.++.+|...-.|.|.|+|.+++||+
T Consensus 399 l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~FmPvFViGAa 478 (931)
T KOG0476|consen 399 LSFRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVFMPVFVIGAA 478 (931)
T ss_pred ccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHHhccccCccceeeeeeechh
Confidence 134445554321 0 000 013457888899999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhhC--CCCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchhcCC
Q 010949 432 VGAVFGGSAAEIINSAI--PGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 432 ~G~~~g~~l~~~~~~~~--p~~~~~~~p~~~alvGmaa~la~v~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
.|+++|..+..++...+ +|....+.|+.||++|+|||-++|+++ ++..+|+||+|||..+++|+|
T Consensus 479 fGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsGaVTHT-vSvAVIifElTGQl~hiLPVm 545 (931)
T KOG0476|consen 479 FGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSGAVTHT-VSVAVIIFELTGQLCHILPVM 545 (931)
T ss_pred hhhhhhhhheeecccccccCCccCccccchhhhhhhhhhccceeee-eeEEEEEEeeccchHHHHHHH
Confidence 99999987765443322 122235789999999999999999996 999999999999999999987
No 19
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.73 E-value=2e-16 Score=166.48 Aligned_cols=183 Identities=17% Similarity=0.226 Sum_probs=132.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-------
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH------- 158 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~------- 158 (497)
..|..++..+++|+++|+++.+|.+.+.+.+++..... ++. ++.+.++.+.++|++++.+.
T Consensus 197 ~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~gl~~~~~~~~~~~~~ 264 (390)
T cd01034 197 PLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWV----------RRF--RRRRPVLFAALCGLALALIGLVSGGLT 264 (390)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hcc--cchhhHHHHHHHHHHHHHHHHhCCCcc
Confidence 45777889999999999999999999988887652210 000 11112233445555554431
Q ss_pred ---HHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 010949 159 ---GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALV 235 (497)
Q Consensus 159 ---g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~l~ 235 (497)
|..++.+..+++. + ......+.|++.+.+|+++|.++|+|+|++++|+.+|+.++++++. .++..++
T Consensus 265 ~G~G~~~i~~~~~~~~-------~-~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~~--~~~~~~a 334 (390)
T cd01034 265 FGTGYLQARAALEGGG-------G-LPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGS--VSQGALV 334 (390)
T ss_pred ccCcHHHHHHHHhCCC-------c-ccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhcC--CCchHHH
Confidence 2222222222110 1 1123457999999999999999999999999999999999998875 2344689
Q ss_pred HHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCcccc
Q 010949 236 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAF 299 (497)
Q Consensus 236 ~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f 299 (497)
.+||+|++++++|+|+++++|++|++... + ...|+++++++|+.+++.+ +.++.|
T Consensus 335 ~~G~aA~laa~~~aPlt~~vl~~Elt~~~---~-----~l~p~lia~~~A~~v~~~~-~~~~iY 389 (390)
T cd01034 335 LLGMAAFLAGVTQAPLTAFVIVMEMTGDQ---Q-----MLLPLLAAALLASGVSRLV-CPEPLY 389 (390)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhCCh---h-----hHHHHHHHHHHHHHHHHHh-CCCCCC
Confidence 99999999999999999999999998631 1 2567899999999999976 455665
No 20
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.68 E-value=8.1e-16 Score=161.67 Aligned_cols=177 Identities=18% Similarity=0.157 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 87 EWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQ 166 (497)
Q Consensus 87 ~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~~ 166 (497)
.|..+.+.+++|+++|+++.+|++.+++.++++.. . .+ .+..+.+++++++++.- ..++
T Consensus 201 ~~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~--------------~--~~--~~~~~~l~gl~~g~~~~---~~p~ 259 (388)
T cd01033 201 STPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPK--------------G--KR--ILWQMPLAFLVIGLLSI---FFPQ 259 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------c--cc--hHHHHHHHHHHHHHHHH---HHHH
Confidence 37778889999999999999999999988875411 1 11 12235567777776521 1223
Q ss_pred hhhcCccccc----c---cccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc--CHHHHHHHHHH
Q 010949 167 IKQSSSLDRQ----G---FDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN--NRERKIALVAA 237 (497)
Q Consensus 167 i~~~~~~~~~----g---~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~--~~~~r~~l~~~ 237 (497)
+.+++....+ + .... ......|++.+.+|+++|.++|.|+|++++|+.+|+.+++.++. ++.+...++.+
T Consensus 260 ~~G~G~~~i~~~~~~~~~~~~l-l~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~~~~~~~a~~ 338 (388)
T cd01033 260 ILGNGRALAQLAFSTTLTLSLL-LILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPPLSIAAFALI 338 (388)
T ss_pred HhCCcHHHHHHHHcCCchHHHH-HHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 3332221110 0 1111 23457899999999999999999999999999999999988653 22334468999
Q ss_pred hHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhh
Q 010949 238 GAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL 292 (497)
Q Consensus 238 G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~ 292 (497)
||+|.+++++|+|+++++|++|++..++ -.+.|+++++++|+.+++.+
T Consensus 339 GmaA~laa~~~aPlt~ivl~~Eltg~~~-------~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 339 GAAAFLAATQKAPLTALILVLEFTRQNP-------LFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999965222 13678999999999999865
No 21
>PRK05277 chloride channel protein; Provisional
Probab=99.65 E-value=5.6e-15 Score=157.73 Aligned_cols=189 Identities=16% Similarity=0.194 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 87 EWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQ 166 (497)
Q Consensus 87 ~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~~ 166 (497)
.+..+...+++|+++|+++.+|++.++..++++.... ..+++++++...++|++++++.- ..++
T Consensus 213 ~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~i~gl~~g~l~~---~~p~ 276 (438)
T PRK05277 213 PLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLH-------------GGNKKRWVLMGGAVGGLCGLLGL---LAPA 276 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------ccccHHHHHHHHHHHHHHHHHHH---Hhhh
Confidence 3556677899999999999999999999988752210 11222233344455555655411 1122
Q ss_pred hhhcCccccc----c-ccc-ccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhh----hcCHHHHHHHHH
Q 010949 167 IKQSSSLDRQ----G-FDL-VAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMM----ENNRERKIALVA 236 (497)
Q Consensus 167 i~~~~~~~~~----g-~~~-~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~----~~~~~~r~~l~~ 236 (497)
..+++..+.+ + .+. ........|++.+.+|+++|.++|.|+|++++|+++|..++..+ +....++..++.
T Consensus 277 ~~g~G~~~i~~~~~~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~a~ 356 (438)
T PRK05277 277 AVGGGFNLIPIALAGNFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQYHIEPGTFAI 356 (438)
T ss_pred hcCChHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHH
Confidence 2222221111 0 111 11224578999999999999999999999999999998888664 333334456889
Q ss_pred HhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc
Q 010949 237 AGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 237 ~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~ 300 (497)
+||+|++++++|+|+++++|++|++.+ + + ...|+++++++|+.+++. .+.++.|+
T Consensus 357 ~G~aA~la~~~~aPlt~~v~~~Eltg~-~--~-----~l~p~lia~~~A~~v~~~-~~~~~iy~ 411 (438)
T PRK05277 357 AGMGALFAATVRAPLTGIVLVLEMTDN-Y--Q-----LILPLIITCLGATLLAQF-LGGKPIYS 411 (438)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCC-h--h-----hHHHHHHHHHHHHHHHHH-hCCCChHH
Confidence 999999999999999999999998652 2 1 256789999999999997 45556664
No 22
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.63 E-value=9.8e-15 Score=154.76 Aligned_cols=186 Identities=17% Similarity=0.147 Sum_probs=132.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILN 165 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~ 165 (497)
..+..+.+.+++|+++|+++..|.+.+++.++++... + ..+| +.+.++|+++|++--+ .+
T Consensus 216 ~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~------------~-~~~~----~~~~lggli~g~l~~~---~p 275 (418)
T PRK01610 216 VQARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSL------------K-LAPP----WQLALGGLIVGLLSLF---TP 275 (418)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc------------c-cchh----HHHHHHHHHHHHHHHH---hh
Confidence 4466677889999999999999999999888765210 0 1122 3457788888876211 13
Q ss_pred HhhhcCcccccc---ccccc---chhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc----CHHHHHHHH
Q 010949 166 QIKQSSSLDRQG---FDLVA---GVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN----NRERKIALV 235 (497)
Q Consensus 166 ~i~~~~~~~~~g---~~~~~---~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~----~~~~r~~l~ 235 (497)
++.+++.+..+. .++.. ......|++.+.+|+++|.++|.+.|++++|+++|+.+++.++. .++.+..+.
T Consensus 276 ~~~G~G~~~i~~~~~~~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a 355 (418)
T PRK01610 276 AVWGNGYSVVQSFLTAPPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPDGEEITLLLG 355 (418)
T ss_pred HHhCCcHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 333333221110 01110 11246899999999999999999999999999999999987752 222234566
Q ss_pred HHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc
Q 010949 236 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 236 ~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~ 300 (497)
.+||+|.+++++|+|++++++++|++.. + + ...|.++++++|+.+++.+ .+++.|+
T Consensus 356 ~vGmaA~laa~~~aPltaivl~~Eltg~-~--~-----~~~p~~ia~~ia~~vs~~~-~~~siy~ 411 (418)
T PRK01610 356 LTGMATLLAATTHAPIMSTLMICEMTGE-Y--Q-----LLPGLLIACVIASVISRTL-RRDSIYR 411 (418)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhCC-H--h-----HHHHHHHHHHHHHHHHHHh-CCCCchH
Confidence 7999999999999999999999999643 1 1 2456789999999999975 4556664
No 23
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.61 E-value=1.7e-14 Score=158.99 Aligned_cols=187 Identities=18% Similarity=0.200 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILN 165 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~ 165 (497)
..+..+.+.+++|+++|+++.+|.+.+.+.++++.. ...++ ++.+.++|+++|++-- ..+
T Consensus 234 ~~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~--------------~~~~~---~~~~~~~gl~~g~l~~---~~p 293 (574)
T PRK01862 234 VTGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKR--------------LPVPL---PVRLALGGLLVGVISV---WVP 293 (574)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------cCCch---hHHHHHHHHHHHHHHH---HHH
Confidence 445666778999999999999999999998876421 11111 2234667777777521 122
Q ss_pred HhhhcCccccc----c-cc-cccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc----CHHHHHHHH
Q 010949 166 QIKQSSSLDRQ----G-FD-LVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN----NRERKIALV 235 (497)
Q Consensus 166 ~i~~~~~~~~~----g-~~-~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~----~~~~r~~l~ 235 (497)
++.+++....+ + .. .........|++.+.+|+++|.++|.|+|++++|+++|+.++..++. .......++
T Consensus 294 ~~~g~G~~~i~~~~~~~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a 373 (574)
T PRK01862 294 EVWGNGYSVVNTILHAPWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHTSAPFAYA 373 (574)
T ss_pred HHhcCCHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 23333221111 0 00 01122346899999999999999999999999999999999986642 222223477
Q ss_pred HHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCcccccc
Q 010949 236 AAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTV 301 (497)
Q Consensus 236 ~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~ 301 (497)
.+||+|.+++++|+|+++++|++|++.. ++ ...|+++++++|+.+++. .+.++.|+.
T Consensus 374 ~vGmaa~~aa~~~aPlt~i~l~~Elt~~---~~-----~~~P~~ia~~~a~~v~~~-~~~~~iy~~ 430 (574)
T PRK01862 374 MVGMGAFLAGATQAPLMAILMIFEMTLS---YQ-----VVLPLMVSCVVAYFTARA-LGTTSMYEI 430 (574)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhCC---Hh-----HHHHHHHHHHHHHHHHHH-hCCCChHHH
Confidence 8999999999999999999999999632 11 367889999999999987 445677753
No 24
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.60 E-value=4.4e-14 Score=148.14 Aligned_cols=174 Identities=21% Similarity=0.206 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILN 165 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~ 165 (497)
.+|..+.+.+++|+++|+++.+|++.+.+.++++... ...+ ++.|+++|++++++..+. -.+
T Consensus 195 ~~~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~-------------~~~~----~~~~~iggl~~g~~~~~~-~~~ 256 (378)
T cd03682 195 LDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR-------------IKNP----YLRPFVGGLLIILLVYLL-GSR 256 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------cCCc----HHHHHHHHHHHHHHHHHh-cCC
Confidence 3466777889999999999999999999998875321 1112 235677888777752110 000
Q ss_pred HhhhcCcccc----cccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHHHHHHhHHH
Q 010949 166 QIKQSSSLDR----QGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAAS 241 (497)
Q Consensus 166 ~i~~~~~~~~----~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~l~~~G~aA 241 (497)
+..+.+.... .+-+. .......|++.+.+|+++|.++|.|.|++.+|+.+|+.+++.++.+.+ .++.+||+|
T Consensus 257 ~~~G~g~~~i~~~~~~~~~-~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~~~~~---~~~~~Gmaa 332 (378)
T cd03682 257 RYLGLGTPLIEDSFFGGTV-YPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILGLPVS---LLAALGFVA 332 (378)
T ss_pred ccccCCHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHH
Confidence 0111100000 00011 122347899999999999999999999999999999999999876543 588999999
Q ss_pred HHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHH
Q 010949 242 GIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVST 290 (497)
Q Consensus 242 glaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~ 290 (497)
.+++++|+|++++++++|++..+ . ..|.++++++|+.+++
T Consensus 333 ~laa~~raPlt~ivl~~Eltg~~----~-----~~p~~ia~~ia~~~~~ 372 (378)
T cd03682 333 VFAGATNTPLACIIMGIELFGAE----N-----APYFFIACLVAYLFSG 372 (378)
T ss_pred HHHHHhcchHHHHHHHHHHhCcc----c-----hHHHHHHHHHHHHHhC
Confidence 99999999999999999998622 1 3467889999888763
No 25
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.58 E-value=3.7e-14 Score=148.89 Aligned_cols=175 Identities=25% Similarity=0.288 Sum_probs=125.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 84 APPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEI 163 (497)
Q Consensus 84 ~~~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i 163 (497)
.+.++..+...+++|+++|+++..|++...+.+++... ...+ +++.+++++++++++.- .
T Consensus 199 ~~~~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~--------------~~~~---~~~~~~i~gll~~~~~~---~ 258 (383)
T cd00400 199 DPLSLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRR--------------LPIP---PWLRPALGGLLLGLLGL---F 258 (383)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------cCCc---HHHHHHHHHHHHHHHHH---H
Confidence 35667888899999999999999999999999876522 1111 13345667777766521 1
Q ss_pred HHHhhhcCccccc----c-ccc-ccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc----CHHHHHH
Q 010949 164 LNQIKQSSSLDRQ----G-FDL-VAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN----NRERKIA 233 (497)
Q Consensus 164 ~~~i~~~~~~~~~----g-~~~-~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~----~~~~r~~ 233 (497)
.++..+++.++.+ + .+. ......+.|++.+.+++++|.++|+|+|++++|+.+|..+++.++. ++.+...
T Consensus 259 ~p~~~g~G~~~~~~~~~~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~~~~~~~~ 338 (383)
T cd00400 259 LPQVLGSGYGAILLALAGELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPGLVASPGA 338 (383)
T ss_pred HHHHHcCcHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCcccCChHH
Confidence 1233333322111 0 111 0123457899999999999999999999999999999999988764 3445567
Q ss_pred HHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHH
Q 010949 234 LVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISS 286 (497)
Q Consensus 234 l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~ 286 (497)
++.+||+|.+++++|+|+++++|++|++.+ .+ ...|+++++++||
T Consensus 339 ~~~~G~aa~la~~~~aPlt~~vl~~Eltg~---~~-----~l~p~~ia~~ia~ 383 (383)
T cd00400 339 YALVGMAALLAAVLRAPLTAILLVLELTGD---YS-----LLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHhCC---hh-----hHHHHHHHHHhcC
Confidence 899999999999999999999999999762 11 2456777877764
No 26
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.52 E-value=3.4e-13 Score=142.59 Aligned_cols=186 Identities=16% Similarity=0.156 Sum_probs=132.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH-GLLEIL 164 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~-g~~~i~ 164 (497)
.++..+...+++|+++|+++.+|.+.+++.++++.... ...++ +.+.+++++++.+. ..++
T Consensus 202 ~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~------------~~~~~----~~~~l~gl~~~~~~~~~p~-- 263 (402)
T cd01031 202 LPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK------------KLPRE----LRVLLPGLLIGPLGLLLPE-- 263 (402)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------cCChh----HHHHHHHHHHHHHHHHHHH--
Confidence 45667778899999999999999999999888753210 11122 23455666666642 1222
Q ss_pred HHhhhcCcccc----cc-cccc-cchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhh----cCHHHHHHH
Q 010949 165 NQIKQSSSLDR----QG-FDLV-AGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME----NNRERKIAL 234 (497)
Q Consensus 165 ~~i~~~~~~~~----~g-~~~~-~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~----~~~~~r~~l 234 (497)
..+++.... ++ .+.. .......|++.+.+++++|.++|.+.|++++|+++|..+++.++ .+..++..+
T Consensus 264 --~~g~G~~~i~~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~~~~ 341 (402)
T cd01031 264 --ALGGGHGLILSLAGGNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPIPISAPATF 341 (402)
T ss_pred --HhCCHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 222221100 00 1111 01234689999999999999999999999999999999998765 233445578
Q ss_pred HHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc
Q 010949 235 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 235 ~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~ 300 (497)
+.+||+|.+++++|+|++++++++|++.+ + + ...|+++++++|+.+++.+. .++.|+
T Consensus 342 a~~G~aa~~a~~~~aPlta~vl~~Eltg~-~--~-----~l~p~~ia~~ia~~v~~~~~-~~siY~ 398 (402)
T cd01031 342 AIAGMAAFFAAVVRAPITAIILVTEMTGN-F--N-----LLLPLMVVCLVAYLVADLLG-GKPIYE 398 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhCC-H--h-----HHHHHHHHHHHHHHHHHHhC-CCChhH
Confidence 99999999999999999999999998753 1 1 25678999999999998744 656664
No 27
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.6e-11 Score=131.10 Aligned_cols=185 Identities=22% Similarity=0.245 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHG-LLEIL 164 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g-~~~i~ 164 (497)
.++..+...+++|+++|+++.+|.+++...+++.. +...+ ..+.|.+++++++.... .|++.
T Consensus 230 ~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~~--------------~~~~~---~~~~~~~~g~l~g~~~l~~P~~l 292 (443)
T COG0038 230 MSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFFR--------------RLPLP---PLLRPALGGLLVGALGLLFPEVL 292 (443)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCcch---HHHHHHHHHHHHHHHHHhchhhh
Confidence 33556667799999999999999998876655431 11112 23456777777777632 23333
Q ss_pred HHhhhcCcccc----cc-cccc-cchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcC----HHHHHHH
Q 010949 165 NQIKQSSSLDR----QG-FDLV-AGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENN----RERKIAL 234 (497)
Q Consensus 165 ~~i~~~~~~~~----~g-~~~~-~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~----~~~r~~l 234 (497)
+++.... .+ .... .......|.+.+.+++++|.++|...|++.+|+.+|..++..++.. ..+...+
T Consensus 293 ----g~G~~~~~~~~~~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~~~~~~~~~ 368 (443)
T COG0038 293 ----GNGYGLIQLALAGEGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPPSILEPGLF 368 (443)
T ss_pred ----CCCccHHHHHHccCccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCccccchHHH
Confidence 2221110 00 1111 1234578999999999999999999999999999999999776532 2333358
Q ss_pred HHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc
Q 010949 235 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 235 ~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~ 300 (497)
+.+||+|.+++..|+|++++++++|++... + ...|.+++|+++|.+++...+ .+.|+
T Consensus 369 al~Gm~a~la~~~~aPlta~vlv~EmTg~~---~-----~~l~ll~a~~ia~~~~~~~~~-~~~~~ 425 (443)
T COG0038 369 ALLGMAAFLAATTRAPLTAIVLVLEMTGNY---Q-----LLLPLLIACLIAYLVSRLLGG-RPIYT 425 (443)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCCc---c-----hHHHHHHHHHHHHHHHHHhCC-CcHHH
Confidence 889999999999999999999999997643 1 246688999999999998655 56654
No 28
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.34 E-value=2.4e-11 Score=129.03 Aligned_cols=175 Identities=18% Similarity=0.191 Sum_probs=130.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 85 PPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEIL 164 (497)
Q Consensus 85 ~~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~ 164 (497)
+.++..+.+.+++|+++|+++.+|.+..++.+++.... .+...+++ .++.|.+++++++.+. + .
T Consensus 230 ~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~i~~~~~-~---~ 293 (416)
T cd01036 230 PLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRL-----------LFRKTARY-RVLEPVLFTLIYSTIH-Y---A 293 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhccccch-hHHHHHHHHHHHHHHH-H---H
Confidence 34556677889999999999999999999888765210 00001222 3556777777776652 1 0
Q ss_pred HHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc------------CHHHHH
Q 010949 165 NQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN------------NRERKI 232 (497)
Q Consensus 165 ~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~------------~~~~r~ 232 (497)
... ......|++.+.+|+++|.++|...|++.+|+.+|..++..+.. ...+..
T Consensus 294 --------------~~l-~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 358 (416)
T cd01036 294 --------------PTL-LLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLWADPG 358 (416)
T ss_pred --------------HHH-HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccccccccccCCccChH
Confidence 001 12346899999999999999999999999999999999876531 012233
Q ss_pred HHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc
Q 010949 233 ALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 233 ~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~ 300 (497)
.++.+||+|-++++.|+|++++++++|++... + ...|.++++++|+.+++.+. ++.|+
T Consensus 359 ~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~---~-----~l~pl~ia~~ia~~v~~~~~--~siY~ 416 (416)
T cd01036 359 VYALIGAAAFLGGTTRLTFSICVIMMELTGDL---H-----HLLPLMVAILIAKAVADAFC--ESLYH 416 (416)
T ss_pred HHHHHHHHHHhhhhhcchHhhhhheeeccCCh---h-----hHHHHHHHHHHHHHHHHhhC--CCCCC
Confidence 58899999999999999999999999997641 1 25678999999999999865 46653
No 29
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.32 E-value=3.8e-11 Score=129.22 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILN 165 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~ 165 (497)
.++..+.+.+++|+++|+++.+|.+..++.+++.... +...++++ ++.+++.+++.+++. +
T Consensus 272 ~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~------------~~~~~~~~-~l~~~lv~~~~~~~~-~----- 332 (466)
T cd03685 272 YTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRI------------NHKGKLLK-VLEALLVSLVTSVVA-F----- 332 (466)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccccchhH-HHHHHHHHHHHHHHH-H-----
Confidence 4566777899999999999999999999988765210 00112222 233333333333331 1
Q ss_pred HhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc----CHHHHHHHHHHhHHH
Q 010949 166 QIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN----NRERKIALVAAGAAS 241 (497)
Q Consensus 166 ~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~----~~~~r~~l~~~G~aA 241 (497)
. .....+...|++.+.+|+++|.++|...|++.+|+++|..++..+.. ...+...++.+||+|
T Consensus 333 -~------------~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa 399 (466)
T cd03685 333 -P------------QTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAA 399 (466)
T ss_pred -H------------HHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHH
Confidence 0 00112336799999999999999999999999999999999876542 222333588899999
Q ss_pred HHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc
Q 010949 242 GIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 242 glaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~ 300 (497)
-++++.|+|++++++++|++... + .+.|.++++++|+.+++.+ + ++.|+
T Consensus 400 ~lag~~raPlt~iviv~ElTg~~---~-----~l~pl~ia~~iA~~va~~~-~-~siY~ 448 (466)
T cd03685 400 FLGGVMRMTVSLTVILLELTNNL---T-----YLPPIMLVLMIAKWVGDYF-N-EGIYD 448 (466)
T ss_pred HHhHHhhhhHHHHHHhhhhcCCh---h-----hHHHHHHHHHHHHHHHHHh-C-CCHHH
Confidence 99999999999999999998752 1 2567899999999999975 3 57775
No 30
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.31 E-value=3.5e-11 Score=125.28 Aligned_cols=182 Identities=23% Similarity=0.260 Sum_probs=125.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 85 PPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEIL 164 (497)
Q Consensus 85 ~~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~ 164 (497)
+.+|..+.+.+++|+++|+++.+|.+...+.++++... .+.. .+ + ++.++++|++++++.-. .
T Consensus 158 ~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~-----------~~~~-~~-~-~l~~~i~gl~~g~l~~~---~ 220 (355)
T PF00654_consen 158 PFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKL-----------KRLK-IP-P-ILRPVIGGLVIGLLAFF---F 220 (355)
T ss_dssp ---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HTTC-HH-H-HHHHHHHHHHHHHHHHS---S
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cccc-cc-h-HHHHHHHHHHHHHHHHH---H
Confidence 56677788899999999999999999999998865220 0011 11 1 23677788888876321 1
Q ss_pred HH--hhhcCccccc----c----cccc-cchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHH----
Q 010949 165 NQ--IKQSSSLDRQ----G----FDLV-AGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRE---- 229 (497)
Q Consensus 165 ~~--i~~~~~~~~~----g----~~~~-~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~---- 229 (497)
++ +-+++..+.+ + .... .......|++.+.+++++|.++|...|++.+|+.+|..++..++....
T Consensus 221 p~~~~~g~G~~~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~ 300 (355)
T PF00654_consen 221 PEGSVLGSGYELIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISS 300 (355)
T ss_dssp GG-SGSSSSTTHHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T
T ss_pred hhhcccCCcHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCC
Confidence 22 2222221110 0 0000 012356899999999999999999999999999999999988764311
Q ss_pred -HHHHHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHh
Q 010949 230 -RKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTV 291 (497)
Q Consensus 230 -~r~~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~ 291 (497)
+...+..+||+|.++++.|+|++++++.+|++.. ++ ...|+++++++|+.++++
T Consensus 301 ~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~-~~-------~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 301 VDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGD-FQ-------LLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp -SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH---GG-------GHHHHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC-HH-------HHHHHHHHHHHHHHHhCC
Confidence 2446889999999999999999999999999872 22 256789999999998873
No 31
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.27 E-value=7.9e-11 Score=126.08 Aligned_cols=191 Identities=17% Similarity=0.109 Sum_probs=129.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHH-
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH-GLLEI- 163 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~-g~~~i- 163 (497)
..+..+.+.+++|+++|+++.+|.+..++.++++.. ... ..+.++.+.+++++++.+- ..++.
T Consensus 202 ~~~~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~--------------~~~-~~~~~~~~~l~~l~~~~l~~~~p~~~ 266 (445)
T cd03684 202 WHYFELIPFILLGIFGGLYGAFFIKANIKWARFRKK--------------SLL-KRYPVLEVLLVALITALISFPNPYTR 266 (445)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hcc-chhHHHHHHHHHHHHHHHHhChHHHc
Confidence 334557788999999999999999999988886522 110 0112334455666665541 11211
Q ss_pred ------HHHhhhcCcccc-----------cc-cccc----cchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 010949 164 ------LNQIKQSSSLDR-----------QG-FDLV----AGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFS 221 (497)
Q Consensus 164 ------~~~i~~~~~~~~-----------~g-~~~~----~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~ 221 (497)
.++.-....+.. .+ ..+. .......|++.+.+++++|.++|...|++.+|+.+|..++
T Consensus 267 ~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g 346 (445)
T cd03684 267 LDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVG 346 (445)
T ss_pred cchhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHH
Confidence 111111100000 00 0010 0123578999999999999999999999999999999998
Q ss_pred hhhhc------------------CHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHH
Q 010949 222 LMMEN------------------NRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASV 283 (497)
Q Consensus 222 ~~~~~------------------~~~~r~~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasv 283 (497)
..++. ...+...++.+||+|-++++.|+|++++++++|++.. + + ...|.+++++
T Consensus 347 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~-~--~-----~l~pl~ia~~ 418 (445)
T cd03684 347 ILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA-L--N-----YILPLMIAVM 418 (445)
T ss_pred HHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC-c--c-----cHHHHHHHHH
Confidence 76641 0112235788999999999999999999999999863 1 1 2567899999
Q ss_pred HHHHHHHhhhCCccccc
Q 010949 284 ISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 284 ia~~v~~~~~g~~~~f~ 300 (497)
+|+.+++. .+.++.|+
T Consensus 419 iA~~vs~~-~~~~siY~ 434 (445)
T cd03684 419 VSKWVADA-IGKEGIYD 434 (445)
T ss_pred HHHHHHHH-hCCCCHHH
Confidence 99999996 44557775
No 32
>PRK03655 putative ion channel protein; Provisional
Probab=99.16 E-value=1.2e-09 Score=115.69 Aligned_cols=172 Identities=14% Similarity=0.123 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH--------
Q 010949 87 EWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH-------- 158 (497)
Q Consensus 87 ~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~-------- 158 (497)
.+..+...+++|+++|+++.+|.+.....++++.. ...|++ .+.++|++++.+-
T Consensus 219 ~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~--------------~~~p~~----~~~lgGl~vg~l~l~~~~~~~ 280 (414)
T PRK03655 219 EMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMHR--------------LKNPVL----VLGIGGFILGILGVIGGPLTL 280 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------cccchH----HHHHHHHHHHHHHHHhCCccc
Confidence 34455677889999999999999998888776521 122322 3466777777752
Q ss_pred --HHHHHHHHhhhcCcccccccccccc---hhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHHHH
Q 010949 159 --GLLEILNQIKQSSSLDRQGFDLVAG---VFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIA 233 (497)
Q Consensus 159 --g~~~i~~~i~~~~~~~~~g~~~~~~---~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r~~ 233 (497)
|+.++.+..++. ++... .....|++++.+|+++|.++|...|++.+|+.+|+.++.+++..+ ...
T Consensus 281 g~Gy~~i~~~~~~~--------~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~p~~~--~~~ 350 (414)
T PRK03655 281 FKGLDEMQQMAANQ--------AFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHVPAVP--AAI 350 (414)
T ss_pred cCCHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHhccCCC--hHH
Confidence 112222222110 11111 134689999999999999999999999999999999999986332 224
Q ss_pred HHHHhHHHHHHhhhc----chhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccc
Q 010949 234 LVAAGAASGIASGFN----AAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVP 302 (497)
Q Consensus 234 l~~~G~aAglaa~F~----APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~ 302 (497)
.++++|+|.++++.+ +|++++++++|++ ..|.+.++.++.++. .-.+|...+.
T Consensus 351 ~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-------------~~~l~~~~~~~~~~~---~~~~~~~~~~ 407 (414)
T PRK03655 351 TVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-------------LLPLLCIVMLPAWLL---LAGKPMMMVN 407 (414)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHhcch-------------HHHHHHHHHHHHHHH---HcCChhhhhc
Confidence 678999999999999 6999999999995 245666766655532 2244555544
No 33
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.15 E-value=5.7e-10 Score=118.90 Aligned_cols=176 Identities=18% Similarity=0.142 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILN 165 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~ 165 (497)
.++..+...+++|+++|+++.+|.+...+.+++...... ..+. .....++.+.+++++++.+. ++
T Consensus 227 ~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~--------~~~~--~~~~~~l~~~~~g~~~~~l~-~p---- 291 (426)
T cd03683 227 FDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRL--------FSKF--LKRSPLLYPAIVALLTAVLT-FP---- 291 (426)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhh--cccchHHHHHHHHHHHHHHH-HH----
Confidence 345566788999999999999999999888876522100 0000 11113456677777777542 22
Q ss_pred HhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc-----------CHHHHHHH
Q 010949 166 QIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-----------NRERKIAL 234 (497)
Q Consensus 166 ~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~-----------~~~~r~~l 234 (497)
. .. .......|++.+.+|+++|.++|...|++.+|+.+|..++..+.. ...+...+
T Consensus 292 -~-----------~~-l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~ 358 (426)
T cd03683 292 -F-----------LT-LFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGY 358 (426)
T ss_pred -H-----------HH-HHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHH
Confidence 0 00 112347899999999999999999999999999999998765431 11233458
Q ss_pred HHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc
Q 010949 235 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 235 ~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~ 300 (497)
+.+||+|-++++.|+|.+. ++++|++... + ...|.++++++|+.+++.+. ++.|+
T Consensus 359 alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~---~-----~llpl~ia~~ia~~v~~~~~--~~iY~ 413 (426)
T cd03683 359 AVVGAAAFSGAVTHTVSVA-VIIFELTGQI---S-----HLLPVLIAVLISNAVAQFLQ--PSIYD 413 (426)
T ss_pred HHHHHHHHHHHHHhHHHHH-heeeeecCCc---c-----hHHHHHHHHHHHHHHHHhhC--CCHHH
Confidence 8899999999999999976 5899997542 1 25678999999999999763 47775
No 34
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.77 E-value=9.8e-05 Score=79.83 Aligned_cols=184 Identities=19% Similarity=0.168 Sum_probs=117.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-------
Q 010949 86 PEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH------- 158 (497)
Q Consensus 86 ~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~------- 158 (497)
.+..-++..+++|+.+|+.+.+|.++-....+..... + ...|. .+-++..+++.+++.
T Consensus 304 W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~------------~-lg~~p--v~ev~~vt~iTaiIs~~np~~r 368 (696)
T KOG0475|consen 304 WSLFELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS------------K-LGKFP--VLEVVFVTLVTAIISLFNPETR 368 (696)
T ss_pred cccccchHHHHHHHhhhHHHHHHHHHHHHHHhccchh------------h-ccCCc--chhHHHHHHHHHHHHhcCHHHH
Confidence 3445566779999999999999988866555543111 0 11121 223344455555541
Q ss_pred -HHHHHHHHhhhcCccccc-ccccc--------cchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhh---
Q 010949 159 -GLLEILNQIKQSSSLDRQ-GFDLV--------AGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME--- 225 (497)
Q Consensus 159 -g~~~i~~~i~~~~~~~~~-g~~~~--------~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~--- 225 (497)
...|.++++-.+-.+... .++-. .......|++.++.|.+++.+.|..-|++.+||+.|..++-..+
T Consensus 369 ~~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~ 448 (696)
T KOG0475|consen 369 FNMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLA 448 (696)
T ss_pred hhHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHh
Confidence 112333333322111111 01000 01234689999999999999999999999999999998883211
Q ss_pred c---------CHHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhh
Q 010949 226 N---------NRERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVL 292 (497)
Q Consensus 226 ~---------~~~~r~~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~ 292 (497)
. +-.-...+...||||.++.+.|-|++-++..+|++.. ++ +..|.++|..++..+...+
T Consensus 449 ~~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~-l~-------~IlPlm~av~~SkwI~d~~ 516 (696)
T KOG0475|consen 449 QNPDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA-LN-------YILPLMLAVMISKWIGDGL 516 (696)
T ss_pred cCCCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc-ce-------eHHHHHHHHHHHHHHHhcc
Confidence 1 0001224677899999999999999999999999764 22 2577888888888887753
No 35
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0037 Score=69.15 Aligned_cols=174 Identities=22% Similarity=0.238 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----Cch-hHHHHhHHHHH---HHHHHHhccccccchHHH
Q 010949 310 AELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFG-----LPP-VVCPALGGLGA---GIIALRYPGILYWGFTNV 380 (497)
Q Consensus 310 ~~l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~iggli~---gll~~~~P~~lg~G~~~~ 380 (497)
.+|.+..++|++.++++...-+.+..+.+..+.+.+... +.. .|..-..+++. +..-+.-|+..|+|-.++
T Consensus 94 eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEm 173 (931)
T KOG0476|consen 94 EDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEM 173 (931)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHheeccccccCCChhH
Confidence 466778899999999998887777766665444333211 111 11111222221 111134588899999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHH
Q 010949 381 EEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAY 460 (497)
Q Consensus 381 ~~~l~~~~~~~~~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~ 460 (497)
..++++-. ..-.+-.--+++|++...+++|||.|=|--.|-.-|++.+...+..+.+-.+.. ++.|.... .-.
T Consensus 174 KtIlrGv~----LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g-~~enesR~--~Em 246 (931)
T KOG0476|consen 174 KTILRGVI----LKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGG-FFENESRN--MEM 246 (931)
T ss_pred HHHHHhhh----HHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhccc-cccCcchH--HHH
Confidence 98887531 111222345679999999999999999999999999999988887765422222 22222111 112
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Q 010949 461 ALVGMAATLASVCSVPLTSVLLLFELTRDY 490 (497)
Q Consensus 461 alvGmaa~la~v~r~Plt~vvl~~Eltg~~ 490 (497)
-.+|.|--.+.+..+|+.++++-+|.|-.|
T Consensus 247 LaaaCAVGVactFsAPiGgVLfSIEvTS~y 276 (931)
T KOG0476|consen 247 LAAACAVGVACTFSAPIGGVLFSIEVTSTY 276 (931)
T ss_pred HHHHhhhhheeeecCccceeEEEEEEeeee
Confidence 233344444555668999999999988543
No 36
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.0019 Score=70.16 Aligned_cols=175 Identities=18% Similarity=0.192 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhh-cCCchhHHHH---hHH-----HHHH-HHHHHhcccccc
Q 010949 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSF-----DFIKEK-FGLPPVVCPA---LGG-----LGAG-IIALRYPGILYW 375 (497)
Q Consensus 311 ~l~~~illG~~~Gl~g~~f~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~---igg-----li~g-ll~~~~P~~lg~ 375 (497)
-|..+.++|++.|++|.+..-.+..+..+. ..+.++ ....-++... +|. ++.. ++.++-|..-|+
T Consensus 87 kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGS 166 (762)
T KOG0474|consen 87 KWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGS 166 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCC
Confidence 456688999999999988877766554321 111111 0000011111 110 0112 223556888899
Q ss_pred chHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHH--Hh-hhCCCCC
Q 010949 376 GFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEI--IN-SAIPGNV 452 (497)
Q Consensus 376 G~~~~~~~l~~~~~~~~~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~--~~-~~~p~~~ 452 (497)
|-.+++..+++-+.+..... --++.|++....+.+.|...|--.|++-.|+++++.+++--..- .. ..++-..
T Consensus 167 GIPevK~YLNGV~iP~ivrl----~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~Fr 242 (762)
T KOG0474|consen 167 GIPEVKCYLNGVKIPGIVRL----RTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFR 242 (762)
T ss_pred CCchhhhhhcCccCcceeeh----hhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhc
Confidence 99999888877554322222 24468999999999999999999999999999999887531100 00 0011111
Q ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 010949 453 AVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRD 489 (497)
Q Consensus 453 ~~~~p~~~alvGmaa~la~v~r~Plt~vvl~~Eltg~ 489 (497)
+.-+..-+..+|+||-.++..|+|+..+++.+|-.-+
T Consensus 243 nDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS 279 (762)
T KOG0474|consen 243 NDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGAS 279 (762)
T ss_pred ccchhhhhhhcchHHhHHHHhCCCccceEEEechhhH
Confidence 2236677899999999999999999999999985443
No 37
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=68.59 E-value=2.1e+02 Score=32.49 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHhHHHHHHhhhcchhh-HHH-HHHHH
Q 010949 227 NRERKIALVAAGAASGIASGFNAAVA-GCF-FAIET 260 (497)
Q Consensus 227 ~~~~r~~l~~~G~aAglaa~F~APl~-g~l-f~~E~ 260 (497)
++++|. .|.+|.+.+.++ ++ +++ |++..
T Consensus 521 ~~~~k~----~~~~a~i~g~~g--ITEpaIPfgv~~ 550 (631)
T PRK09765 521 KEFEIE----TGKSTWLLGLAG--ITEGAIPMAIED 550 (631)
T ss_pred CHHHHH----HHHHHHHHHHHh--cCcccHHHHHhc
Confidence 455553 467777777775 44 555 66665
No 38
>PRK10490 sensor protein KdpD; Provisional
Probab=66.74 E-value=40 Score=39.83 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 010949 276 AMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVF 329 (497)
Q Consensus 276 ~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illG~~~Gl~g~~f 329 (497)
.|.++|++++.+++++|+ ..|.|++...+...+..+..+++++++.|.+..-.
T Consensus 446 ~pai~aavls~l~~nfFF-~~P~~Tf~v~~~~~~~t~~v~l~va~v~~~l~~r~ 498 (895)
T PRK10490 446 WPSVVATVINVASFDLFF-VAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGV 498 (895)
T ss_pred HHHHHHHHHHHHHHHhee-CCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999998888766 55888877666556667777778888876555443
No 39
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=65.91 E-value=53 Score=38.02 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=52.7
Q ss_pred hhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHHHHHHHHHH
Q 010949 246 GFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVV 325 (497)
Q Consensus 246 ~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illG~~~Gl~ 325 (497)
.|+..--.++|.+-++.-.... . .+|.+++|+++.+++++|+ ..|-|++..++...+-.+..++..|++.|-+
T Consensus 419 ~~~~~ni~mvFllgVlv~av~~-g-----~~pa~~aailsvl~fNyFF-~ePryTf~v~d~~y~vTf~vml~vai~t~~L 491 (890)
T COG2205 419 FFDLANIVMLFLLGVLVVAVLT-G-----RWPAVLAALLSVLVFNYFF-TEPRYTFAVSDPQYLVTFAVMLAVALLTGNL 491 (890)
T ss_pred hccchhHHHHHHHHHHHHHHHh-c-----hHHHHHHHHHHHHHHhhee-cCCceEEEEecCchHHHHHHHHHHHHHHHHH
Confidence 4778888888888876543222 1 3678899999999999877 5588887766665556666677777775544
Q ss_pred H
Q 010949 326 S 326 (497)
Q Consensus 326 g 326 (497)
.
T Consensus 492 t 492 (890)
T COG2205 492 T 492 (890)
T ss_pred H
Confidence 4
No 40
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=45.54 E-value=32 Score=30.49 Aligned_cols=17 Identities=24% Similarity=0.749 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010949 313 PLYLILGMLCGVVSVVF 329 (497)
Q Consensus 313 ~~~illG~~~Gl~g~~f 329 (497)
...|++|+++|++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 46789999999999775
No 41
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=43.18 E-value=6e+02 Score=29.62 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010949 309 AAELPLYLILGMLCGVVSVVFTRLVAWFTK 338 (497)
Q Consensus 309 ~~~l~~~illG~~~Gl~g~~f~~~~~~~~~ 338 (497)
+.++...++=+++++.+.++|.+.+..+..
T Consensus 112 ~y~~~~~~~e~~l~~~l~~if~~~~~~~~~ 141 (764)
T TIGR02865 112 PLDFILSIVEASLSFVLYYIFNYSIPCLKN 141 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777778888999999999999887653
No 42
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.37 E-value=82 Score=27.35 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHhHHHHHHhhh
Q 010949 210 VDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGF 247 (497)
Q Consensus 210 v~iGa~ig~~l~~~~~~~~~~r~~l~~~G~aAglaa~F 247 (497)
+.+|+.+|..+-++++..+--.+.+...|++||+=-+.
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 56788999888888887777778888999999875443
No 43
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=29.99 E-value=66 Score=24.82 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcchhHHHhhhhhhhc
Q 010949 12 SNQEDLESAPDSPSNRTSTPSAAGGIKDLFKQLDRRFS 49 (497)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (497)
|.+++.+.|-|.++..+++|| ..|.|-|-+..||-+.
T Consensus 8 sgdad~e~d~e~ese~gagpr-s~gwralrrlwdrvl~ 44 (71)
T PF15451_consen 8 SGDADGEADEEEESEKGAGPR-SAGWRALRRLWDRVLA 44 (71)
T ss_pred ccccccccccccccccCCCCc-cccHHHHHHHHHHHHh
Confidence 344455566666677788999 7888888887777775
No 44
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=28.77 E-value=94 Score=25.82 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhCCcccc--ccccCCCCchhhHHHHHHHHHHHHHHH
Q 010949 278 IILASVISSTVSTVLLGTQSAF--TVPSYDLKSAAELPLYLILGMLCGVVS 326 (497)
Q Consensus 278 ~liasvia~~v~~~~~g~~~~f--~~~~~~~~~~~~l~~~illG~~~Gl~g 326 (497)
.+++++.+.......+=.++.+ +...++..++..+..++++|+++|.+.
T Consensus 49 gl~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~va~v~g~l~ 99 (105)
T PF13493_consen 49 GLFAALLSSLLLNFFFFPPPFYDLTFLVYDPQDWITFAVFLVVALVTGYLA 99 (105)
T ss_dssp -SHHHHHHHHHHHHTTS-SS----TT-SS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccccchhhcChhHHHHHHHHHHHHHHHHHHH
Confidence 3456666554433323233443 222233334455666777777766554
No 45
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=23.44 E-value=1.4e+02 Score=23.98 Aligned_cols=27 Identities=33% Similarity=0.627 Sum_probs=22.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH
Q 010949 83 SAPPEWALLLIGCLLGLASGLCVAFFN 109 (497)
Q Consensus 83 ~~~~~~~lll~~il~Gv~~Gl~a~~f~ 109 (497)
..|.+...++++.++|++.|+..++++
T Consensus 54 ~~P~~~lil~l~~~~Gl~lgi~~~~~r 80 (82)
T PF13807_consen 54 VSPKRALILALGLFLGLILGIGLAFLR 80 (82)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447778888999999999999888765
No 46
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=21.52 E-value=6.6e+02 Score=26.09 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 010949 278 IILASVISSTVS 289 (497)
Q Consensus 278 ~liasvia~~v~ 289 (497)
.++.++.++.+.
T Consensus 11 ~i~g~~lG~~~~ 22 (356)
T COG4956 11 IIIGAVLGFAVI 22 (356)
T ss_pred HHHHhhhhHhhH
Confidence 456666666655
No 47
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=20.79 E-value=1.1e+03 Score=25.62 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=23.3
Q ss_pred HHHHhhcccccCCchhHHHHHHHHHHHHHh
Q 010949 193 AAVTLGTGCSLGPEGPSVDIGKSCANGFSL 222 (497)
Q Consensus 193 ~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~ 222 (497)
..+.=+.|.-+|.-++.+.+|+.+|..+-+
T Consensus 49 ~~i~~G~ggtlg~i~~Vi~lGam~GkLle~ 78 (442)
T COG2610 49 GTIMKGFGGTLGSLALVIGLGAMLGKLLED 78 (442)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888888888888877663
No 48
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=20.16 E-value=3e+02 Score=19.43 Aligned_cols=29 Identities=31% Similarity=0.671 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 010949 143 ILLIPVTGGVIVGMMHGLLEILNQIKQSS 171 (497)
Q Consensus 143 ~llip~~ggllvgl~~g~~~i~~~i~~~~ 171 (497)
.+.+|+.-.++.|+++|+.++.+-+..-+
T Consensus 9 ~iMVPVvma~ilglIyGlGevfN~iS~~G 37 (41)
T PF10766_consen 9 VIMVPVVMALILGLIYGLGEVFNLISKIG 37 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788888899999999998888776543
No 49
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=20.01 E-value=3.8e+02 Score=22.10 Aligned_cols=60 Identities=23% Similarity=0.404 Sum_probs=35.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhCC-ccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 010949 269 NSPPFTTAMIILASVISSTVSTVLLGT-QSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRL 332 (497)
Q Consensus 269 ~~~~~~~~~~liasvia~~v~~~~~g~-~~~f~~~~~~~~~~~~l~~~illG~~~Gl~g~~f~~~ 332 (497)
+...|..+.+.+..+++..++|.-+|. ..-|++|. +-|..-.+++-|...-+-+..|.-+
T Consensus 11 ~~kkFl~~l~~vfiia~~Vv~rAt~gGVi~qYniP~----s~WttsMf~~Q~ami~vYS~VFT~L 71 (85)
T PF10749_consen 11 EGKKFLLALAIVFIIAATVVGRATIGGVIEQYNIPF----SEWTTSMFILQGAMILVYSIVFTIL 71 (85)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCh----hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333455554555556667788866554 35677773 2245566777777766666666544
Done!