Query 010949
Match_columns 497
No_of_seqs 165 out of 1575
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:39:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ots_A Voltage-gated CLC-type 100.0 5.1E-62 1.7E-66 520.1 41.4 385 85-497 30-426 (465)
2 3nd0_A SLL0855 protein; CLC fa 100.0 2.5E-61 8.4E-66 514.0 37.9 380 85-497 26-418 (466)
3 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 9.1E-61 3.1E-65 507.8 41.2 383 85-497 15-411 (446)
4 3org_A CMCLC; transporter, tra 100.0 4.1E-53 1.4E-57 467.5 36.4 386 83-497 3-412 (632)
5 1ots_A Voltage-gated CLC-type 99.5 8.8E-13 3E-17 140.4 17.6 188 88-300 249-446 (465)
6 4ene_A CLC-EC1, H(+)/CL(-) exc 99.5 1.3E-12 4.4E-17 138.4 17.8 187 89-300 235-431 (446)
7 3nd0_A SLL0855 protein; CLC fa 99.4 2.2E-12 7.6E-17 137.2 16.5 182 88-300 244-438 (466)
8 3org_A CMCLC; transporter, tra 99.1 4.9E-10 1.7E-14 123.6 17.0 170 309-489 8-187 (632)
9 2ksf_A Sensor protein KDPD; me 31.7 32 0.0011 28.3 3.2 45 278-323 53-97 (107)
10 2l2t_A Receptor tyrosine-prote 18.9 1E+02 0.0035 21.3 3.2 23 315-337 11-33 (44)
No 1
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=5.1e-62 Score=520.08 Aligned_cols=385 Identities=25% Similarity=0.375 Sum_probs=322.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHH-HHHHHHHHHHHHHHHHH-----
Q 010949 85 PPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWH-RILLIPVTGGVIVGMMH----- 158 (497)
Q Consensus 85 ~~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~llip~~ggllvgl~~----- 158 (497)
...++++++++++|+++|+++.+|+.++++++++++...+.. .....+|| .++++|++++++++++.
T Consensus 30 ~~~~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~p 102 (465)
T 1ots_A 30 KTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-------ADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP 102 (465)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccccccHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 455788899999999999999999999999999886532110 00012333 34577888887777652
Q ss_pred -----HHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhc-CHHHHH
Q 010949 159 -----GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEN-NRERKI 232 (497)
Q Consensus 159 -----g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~-~~~~r~ 232 (497)
|++++++.+++.. ++...+..+.|++++++++++|+|+|||||++|+|+++|+.++++++. ++++||
T Consensus 103 ~a~GsGip~v~~~l~~~~-------~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~~~l~~~~~~r 175 (465)
T 1ots_A 103 EAGGSGIPEIEGALEDQR-------PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARH 175 (465)
T ss_dssp GGSSCSHHHHHHHHTTCS-------CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred cccCCChHHHHHHHhCCC-------CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 4556666555421 122345678999999999999999999999999999999999999994 788888
Q ss_pred HHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhhH
Q 010949 233 ALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAEL 312 (497)
Q Consensus 233 ~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l 312 (497)
.+++||+|||++++||||++|++|++|++.++++.+.. ..+|+++++++++++++.+.|.++.|.++..+..++.++
T Consensus 176 ~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~---~~~~~~~as~~a~~v~~~~~G~~~~f~~~~~~~~~~~~l 252 (465)
T 1ots_A 176 TLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLI---SIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTL 252 (465)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCC---CHHHHHHHHHHHHHHHHHHSCSCCSSCCCCCCCCCGGGH
T ss_pred HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHH---HHHHHHHHHHHHHHHHHHHcCCCceeecCCCCCCCHHHH
Confidence 89999999999999999999999999999887765431 146789999999999999999999999988776678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCCC
Q 010949 313 PLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASA 392 (497)
Q Consensus 313 ~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~~ 392 (497)
++++++|++||++|.+|++.+.+.++++++++++.++++++++.++|++++++++++|+++++|++.++++++++
T Consensus 253 ~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~lG~G~~~i~~~~~~~----- 327 (465)
T 1ots_A 253 WLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN----- 327 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGGSSCSTTHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHcCC-----
Confidence 999999999999999999999999998877642211234578999999999999999999999999999998864
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHHH
Q 010949 393 PGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASV 472 (497)
Q Consensus 393 ~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~v 472 (497)
...+.++.+++.|+++|.+|+|+|++||+|+|++++||++|+++|.+++. .+|+. ..+|..|+++||+|+++++
T Consensus 328 ~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~----~~p~~--~~~~~~~alvGmaa~~a~v 401 (465)
T 1ots_A 328 FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE----LFPQY--HLEAGTFAIAGMGALLAAS 401 (465)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHH----HCGGG--TCCHHHHHHHHHTHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHH----HCCcc--cccHHHHHHHHHHHHHHHH
Confidence 33566778889999999999999999999999999999999999987654 35652 3689999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCccchhcCC
Q 010949 473 CSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 473 ~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
+|+|+|++++++||||++++++|+|
T Consensus 402 ~raPlt~ivlv~Eltg~~~~llpl~ 426 (465)
T 1ots_A 402 IRAPLTGIILVLEMTDNYQLILPMI 426 (465)
T ss_dssp SCCHHHHHHHHHHHHCCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999976
No 2
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=2.5e-61 Score=513.97 Aligned_cols=380 Identities=24% Similarity=0.340 Sum_probs=315.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHH---HHHHHHHHHHHHHHHH----
Q 010949 85 PPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWH---RILLIPVTGGVIVGMM---- 157 (497)
Q Consensus 85 ~~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~llip~~ggllvgl~---- 157 (497)
..++++++.++++|+++|+++.+|+.++++++++++...... ...+|+ .+++++..++++++++
T Consensus 26 ~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~l~~~l~~~~ 96 (466)
T 3nd0_A 26 SLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQIL---------APIPPLAWLVTALISGGMVALSFWLMKRF 96 (466)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTSCTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999999999999999999999886532110 111222 1122333334444433
Q ss_pred ------HHHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHH
Q 010949 158 ------HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERK 231 (497)
Q Consensus 158 ------~g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r 231 (497)
++++|+...+++.. ++.+.+..+.|++++++++++|+|+|||||++|+|+++|++++++++.++++|
T Consensus 97 ~p~a~GsGIp~v~~~l~g~~-------~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~~~~~~~~~~ 169 (466)
T 3nd0_A 97 APDTSGSGIPQIEGHLEGKL-------PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKATQENQ 169 (466)
T ss_dssp CGGGSBCSHHHHHHHTTSSS-------CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCcCCCCHHHHHHHHcCCC-------CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHcCCChhHH
Confidence 14555555554321 23334667899999999999999999999999999999999999999888888
Q ss_pred HHHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchhh
Q 010949 232 IALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAE 311 (497)
Q Consensus 232 ~~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~ 311 (497)
|.+++||+|||++++||||++|++|++|++.++++++.. ..+|+++++++++++++.+.|+++.|.++..+..++.+
T Consensus 170 r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~---~~~~~~~as~~a~~v~~~~~g~~~~f~~~~~~~~~~~~ 246 (466)
T 3nd0_A 170 RILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTL---AYHSLLFGCVMATIILRMIRGQSAIISLTEFKRVPLDS 246 (466)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCT---THHHHHHHHHHHHHHHHHHTCSSCSSCCTTCCCCCGGG
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHH---HHHHHHHHHHHHHHHHHHHcCCCCceecCCCCCCCHHH
Confidence 899999999999999999999999999999877755432 24688999999999999999999999998776667889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCCC
Q 010949 312 LPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTAS 391 (497)
Q Consensus 312 l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~~ 391 (497)
+++++++|++||++|.+|++.+.+.+++++++++ .++++++.++|++++++++++|+++++|++.++++++++
T Consensus 247 l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~~---~~~~~~~~l~g~~~g~l~~~~p~~~G~G~~~i~~~~~~~---- 319 (466)
T 3nd0_A 247 LWMFIILGILFGVMGYTFNRGLFKVLDWFDRLPP---LATKWKGFLLGSIIGILSLFPLPLTDGGDNAVLWAFNSQ---- 319 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHHHHHHHHHTTSSSSCSSSSHHHHHHHTTSC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---ccHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHcCC----
Confidence 9999999999999999999999999888765431 345678889999999999999999999999999888654
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHHH
Q 010949 392 APGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLAS 471 (497)
Q Consensus 392 ~~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la~ 471 (497)
..++.++.+++.|+++|.+|+|+|++||+|+|++++||++|+++|.+++. .+|+. ..+|..|+++||+|++++
T Consensus 320 -~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~----~~p~~--~~~~~~~a~vGmaa~~a~ 392 (466)
T 3nd0_A 320 -SHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHL----LFPSQ--IPEPAVMAIAGMGALVAA 392 (466)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHH----HCTTT--CSSTHHHHHHTTSHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHH----hCCcc--ccCHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999987654 46753 368999999999999999
Q ss_pred HhhhHHHHHHHHHHHhcCccchhcCC
Q 010949 472 VCSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 472 v~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
++|+|+|++++++||||++++++|+|
T Consensus 393 v~~aPlt~ivlv~Eltg~~~~~lpl~ 418 (466)
T 3nd0_A 393 TVRAPLTAILLTIEMTDNYFVILPLL 418 (466)
T ss_dssp HHSCHHHHHHHHHHTTCCCTTHHHHH
T ss_pred HHhhHHHHHHHHHHHHCChHHHHHHH
Confidence 99999999999999999999999976
No 3
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=9.1e-61 Score=507.75 Aligned_cols=383 Identities=25% Similarity=0.376 Sum_probs=309.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHH---HHHHHHHHHHHHHHH---
Q 010949 85 PPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRI---LLIPVTGGVIVGMMH--- 158 (497)
Q Consensus 85 ~~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---llip~~ggllvgl~~--- 158 (497)
...+++++.++++|+++|+++..|+.++++++++++...... ...+|+.+ ++++.+++++++++.
T Consensus 15 ~~~~~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (446)
T 4ene_A 15 KTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT---------ADNYPLLLTVAFLCSAVLAMFGYFLVRKY 85 (446)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------SSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455778889999999999999999999999999886532110 11233222 222333444555441
Q ss_pred -------HHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhhcCHHHH
Q 010949 159 -------GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERK 231 (497)
Q Consensus 159 -------g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~~r 231 (497)
|++|+...+++. .++.+.+..+.|++++++++++|+|+|||||++|+|+++|++++++++.++++|
T Consensus 86 ~p~a~GsGip~v~~~l~~~-------~~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~~~~~~~~~ 158 (446)
T 4ene_A 86 APEAGGSGIPEIEGALEDQ-------RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEA 158 (446)
T ss_dssp CGGGSSCSHHHHHHHHHTC-------SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHHTTCCSHHH
T ss_pred CcccCCCCHHHHHHHHhCC-------CccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHHHcCCCHHHH
Confidence 334444444321 123335567899999999999999999999999999999999999999665444
Q ss_pred -HHHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccccccCCCCchh
Q 010949 232 -IALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAA 310 (497)
Q Consensus 232 -~~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~ 310 (497)
+.+++||+|||++++||||++|++|++|++.++++++.. ...|+++++++++.+++.+.|+++.|.++.++..++.
T Consensus 159 r~~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~---~~~~~~~as~~a~~v~~~~~g~~~~~~~~~~~~~~~~ 235 (446)
T 4ene_A 159 RHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLI---SIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLN 235 (446)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCC---CHHHHHHHHHHHHHHHHHTTTTCCSCCCCCCCCCCGG
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHH---HHHHHHHHHHHHHHHHHHHcCCCceeecCCCCccCHH
Confidence 489999999999999999999999999999877665211 2567899999999999999999999999887766788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhccccccchHHHHHHHhcCCCC
Q 010949 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTA 390 (497)
Q Consensus 311 ~l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~G~~~~~~~l~~~~~~ 390 (497)
+++.++++|++||++|.+|++.+.+.++++++++++...++++...+.|++++++++.+|+.+++|++.+++.++++
T Consensus 236 ~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l~~~~p~~~G~G~~~i~~~~~~~--- 312 (446)
T 4ene_A 236 TLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGN--- 312 (446)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGGSSCCSTHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHhhcCCcHHHHHHHHcCC---
Confidence 99999999999999999999999999998877653221222333446677889999999999999999999888754
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchHHHHHHHHHHHHH
Q 010949 391 SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLA 470 (497)
Q Consensus 391 ~~~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~~~alvGmaa~la 470 (497)
..+..++.+++.|+++|.+|+|+|+|||+|+|++++||++|+++|.+++. .+|+. ..+|..|+++||+|+++
T Consensus 313 --~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~----~~p~~--~~~~~~~a~vGmaa~~a 384 (446)
T 4ene_A 313 --FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE----LFPQY--HLEAGTFAIAGMGALLA 384 (446)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHH----HCGGG--TCCHHHHHHHHHTHHHH
T ss_pred --chHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHH----hCCcc--ccCHHHHHHHHHHHHHH
Confidence 33567778889999999999999999999999999999999999987654 35642 26899999999999999
Q ss_pred HHhhhHHHHHHHHHHHhcCccchhcCC
Q 010949 471 SVCSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 471 ~v~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
+++|+|+|++++++||||++++++|+|
T Consensus 385 ~~~~aPlt~~vl~~Eltg~~~~~lpl~ 411 (446)
T 4ene_A 385 ASIRAPLTGIILVLEMTDNYQLILPMI 411 (446)
T ss_dssp HHTCCHHHHHHHHHHHHCCGGGHHHHH
T ss_pred HHHccHHHHHHHHHHHHCChhHHHHHH
Confidence 999999999999999999999999986
No 4
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=4.1e-53 Score=467.47 Aligned_cols=386 Identities=24% Similarity=0.296 Sum_probs=285.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH----
Q 010949 83 SAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH---- 158 (497)
Q Consensus 83 ~~~~~~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~---- 158 (497)
+.+..++++++++++|+++|+++++|+.++++.+++....+ .+ ... ..+|+.++++|++++++++++.
T Consensus 3 ~~~~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~-----~~--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (632)
T 3org_A 3 SLMYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKIS-----RL--AGR-FAGYILYVVSGVALCLLSTFWCAVLS 74 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--SCH-HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--hhh-hHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34667889999999999999999999999999887642100 00 001 1234445678888887777652
Q ss_pred ------HHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHh--hhh---cC
Q 010949 159 ------GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSL--MME---NN 227 (497)
Q Consensus 159 ------g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~--~~~---~~ 227 (497)
|++|+...+++... .. -++.+.+..+.|++++++++++|+|+|||||++|+|+++|+.+++ +|+ .+
T Consensus 75 p~a~GsGIp~v~~~l~g~~~-~~--~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~~ 151 (632)
T 3org_A 75 TEAEGSGLPQMKSILSGFYD-KM--RSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTD 151 (632)
T ss_dssp GGGCBCSHHHHHHHTTTTHH-HH--GGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHHHS
T ss_pred CccCCCCHHHHHHHHhCccc-cc--cccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhccccCC
Confidence 45555444432110 00 134556778899999999999999999999999999999999999 776 46
Q ss_pred HHHHHHHHHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCcc---cccc--c
Q 010949 228 RERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQS---AFTV--P 302 (497)
Q Consensus 228 ~~~r~~l~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~---~f~~--~ 302 (497)
+++|+.+++||+|||+||+||||++|++|++|+++++++.++ +++++++|++++++++.+.+..+ .|.. +
T Consensus 152 ~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~-----~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~ 226 (632)
T 3org_A 152 RALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQA-----FWKGVLSALSGAIVYELLYTTPLVEAFEGTNFD 226 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTH-----HHHHHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHhccCcccccccccccc
Confidence 667778999999999999999999999999999998776543 57789999999999887665433 2211 1
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHhHHHHHHHHHHHhcccccc--chHHH
Q 010949 303 SYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYW--GFTNV 380 (497)
Q Consensus 303 ~~~~~~~~~l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iggli~gll~~~~P~~lg~--G~~~~ 380 (497)
....+++.++ +++++|++||++|.+|++++.++.++ +.+++.+.++++++.+++++++. +.+|...+. +++.+
T Consensus 227 ~~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--l~~p~~~g~~~~~~~i 301 (632)
T 3org_A 227 ASDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYEL--RMRHYPGTNRYFLVGVVALFASA--LQYPFRLFALDPRATI 301 (632)
T ss_dssp --CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSTTCCTHHHHHHHHHHHHH--HTTTC------CHHHH
T ss_pred ccCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcchhHHHHHHHHHHHHHH--HHHHHHhcCCcHHHHH
Confidence 1112456788 99999999999999999999988765 12222234567788888776653 567877554 46677
Q ss_pred HHHHhcCCCC--CCchHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHHHHHHHHhhhCCCCCCccchH
Q 010949 381 EEILHTGKTA--SAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQ 458 (497)
Q Consensus 381 ~~~l~~~~~~--~~~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~l~~~~~~~~p~~~~~~~p~ 458 (497)
++++++.... ....+..++.++++|+++|.+|+|+|+|||+|+|+|++||++|+++|.+++. .+|+. .+|+
T Consensus 302 ~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~----~~p~~---~~p~ 374 (632)
T 3org_A 302 NDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRV----VFGNA---IVPG 374 (632)
T ss_dssp HHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHH----HHCTT---SCHH
T ss_pred HHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHH----hCCcc---cchH
Confidence 7777543200 0111224566788999999999999999999999999999999999987654 34642 5789
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccchhcCC
Q 010949 459 AYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497 (497)
Q Consensus 459 ~~alvGmaa~la~v~r~Plt~vvl~~Eltg~~~~llPlm 497 (497)
.|+++||+|++++++|+|+|++ +++||||++++++|+|
T Consensus 375 ~~a~vGmaa~~~~v~~ap~t~v-i~~E~tg~~~~~lpl~ 412 (632)
T 3org_A 375 SYAVVGAAAFTAGVTRALSCAV-IIFEVTGQIRHLVPVL 412 (632)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHH-HHHHHTCCCSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhCChhHHHHHH
Confidence 9999999999999999999986 8999999999999986
No 5
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.46 E-value=8.8e-13 Score=140.37 Aligned_cols=188 Identities=14% Similarity=0.215 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010949 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQI 167 (497)
Q Consensus 88 ~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~~i 167 (497)
+..+...+++|+++|+++.+|.+...+.++++.. . ...+.++.++.+.++|++++.+-- ..+++
T Consensus 249 ~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~i~gl~~g~l~~---~~P~~ 312 (465)
T 1ots_A 249 LNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHR-----------V--HGGNITKWVLMGGAIGGLCGLLGF---VAPAT 312 (465)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HTTCHHHHHHHHHHHHHHHHHHHH---HCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------c--ccCCchhHHHHHHHHHHHHHHHHH---HhHhh
Confidence 3445667999999999999999999988876521 0 011222345667788888887621 11233
Q ss_pred hhcCccccc----c-ccc-ccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhh----cCHHHHHHHHHH
Q 010949 168 KQSSSLDRQ----G-FDL-VAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME----NNRERKIALVAA 237 (497)
Q Consensus 168 ~~~~~~~~~----g-~~~-~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~----~~~~~r~~l~~~ 237 (497)
.+++....+ + ... ........|++.+.+|+++|.++|...|++.+|+++|..++..++ ....+...++.+
T Consensus 313 lG~G~~~i~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alv 392 (465)
T 1ots_A 313 SGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIA 392 (465)
T ss_dssp SSCSTTHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHH
T ss_pred cCChHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHCCcccccHHHHHHH
Confidence 333322111 0 010 111235689999999999999999999999999999999887643 211223358899
Q ss_pred hHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc
Q 010949 238 GAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 238 G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~ 300 (497)
||+|-++++.|+|++++++++|++.. ++ ...|.++++++|+.+++. +++++.|+
T Consensus 393 Gmaa~~a~v~raPlt~ivlv~Eltg~-~~-------~llpl~ia~~iA~~v~~~-~~~~~iY~ 446 (465)
T 1ots_A 393 GMGALLAASIRAPLTGIILVLEMTDN-YQ-------LILPMIITGLGATLLAQF-TGGKPLYS 446 (465)
T ss_dssp HHTHHHHHTSCCHHHHHHHHHHHHCC-GG-------GHHHHHHHHHHHHHHHHT-TTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-HH-------HHHHHHHHHHHHHHHHHH-hCCCChHH
Confidence 99999999999999999999999853 21 246789999999999986 44556654
No 6
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.45 E-value=1.3e-12 Score=138.35 Aligned_cols=187 Identities=13% Similarity=0.162 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010949 89 ALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIK 168 (497)
Q Consensus 89 ~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~g~~~i~~~i~ 168 (497)
..+...+++|+++|+++.+|.+.+.+.++++.. ....++.++++.+.++|++++++-- ..++..
T Consensus 235 ~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~g~~~g~l~~---~~p~~~ 298 (446)
T 4ene_A 235 NTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHR-------------VHGGNITKWVLMGGAIGGLCGLLGF---VAPATS 298 (446)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHHHHHHHHHH---HCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------ccccchhHHHHHHHHHHHHHHHHHH---HhHhhc
Confidence 334456899999999999999999988876521 0112334444444455555555411 122333
Q ss_pred hcCcccccc---ccccc---chhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhh----cCHHHHHHHHHHh
Q 010949 169 QSSSLDRQG---FDLVA---GVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME----NNRERKIALVAAG 238 (497)
Q Consensus 169 ~~~~~~~~g---~~~~~---~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~----~~~~~r~~l~~~G 238 (497)
+++....+. -++.. ......|++.+.+|+++|.++|...|++.+|+.+|..++..++ ....+...+..+|
T Consensus 299 G~G~~~i~~~~~~~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vG 378 (446)
T 4ene_A 299 GGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAG 378 (446)
T ss_dssp SCCSTHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHH
T ss_pred CCcHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHH
Confidence 333221110 01110 1235689999999999999999999999999999998886543 2112233578899
Q ss_pred HHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc
Q 010949 239 AASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 239 ~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~ 300 (497)
|+|-++++.|+|++++++++|++... + ...|.++++++|+.+++. .++++.|+
T Consensus 379 maa~~a~~~~aPlt~~vl~~Eltg~~-~-------~~lpl~ia~~ia~~v~~~-~~~~~iY~ 431 (446)
T 4ene_A 379 MGALLAASIRAPLTGIILVLEMTDNY-Q-------LILPMIITGLGATLLAQF-TGGKPLYS 431 (446)
T ss_dssp HTHHHHHHTCCHHHHHHHHHHHHCCG-G-------GHHHHHHHHHHHHHHHHH-TTCCCHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHCCh-h-------HHHHHHHHHHHHHHHHHH-hCCCChHH
Confidence 99999999999999999999998631 1 256789999999999987 45567664
No 7
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.41 E-value=2.2e-12 Score=137.17 Aligned_cols=182 Identities=17% Similarity=0.239 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---------
Q 010949 88 WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMH--------- 158 (497)
Q Consensus 88 ~~lll~~il~Gv~~Gl~a~~f~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~llip~~ggllvgl~~--------- 158 (497)
+..+...+++|+++|+++.+|.+.+.+.++++.. .. .+ +.++.|.++|++++++-
T Consensus 244 ~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~--------------~~-~~-~~~~~~~l~g~~~g~l~~~~p~~~G~ 307 (466)
T 3nd0_A 244 LDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDR--------------LP-PL-ATKWKGFLLGSIIGILSLFPLPLTDG 307 (466)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------CC-HH-HHHHHHHHHHHHHHHHTTSSSSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------cc-cc-cHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344557899999999999999999988876521 11 11 12345677787777751
Q ss_pred HHHHHHHHhhhcCcccccccccccchhhHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHhhhh----cCHHHHHHH
Q 010949 159 GLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMME----NNRERKIAL 234 (497)
Q Consensus 159 g~~~i~~~i~~~~~~~~~g~~~~~~~~~~~K~l~~~~tl~sG~s~G~EgP~v~iGa~ig~~l~~~~~----~~~~~r~~l 234 (497)
|...+.+..+++ .....+ ......|++.+.+|+++|.++|...|++.+|+.+|..++..++ ....+...+
T Consensus 308 G~~~i~~~~~~~-----~~~~~L-~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~ 381 (466)
T 3nd0_A 308 GDNAVLWAFNSQ-----SHFSTL-ILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVM 381 (466)
T ss_dssp SHHHHHHHTTSC-----CCHHHH-HHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTCSSTHHH
T ss_pred cHHHHHHHHcCC-----ccHHHH-HHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCccccCHHHH
Confidence 222222212111 000001 1345789999999999999999999999999999999887643 111122357
Q ss_pred HHHhHHHHHHhhhcchhhHHHHHHHHhcccccccCCCchHHHHHHHHHHHHHHHHHhhhCCccccc
Q 010949 235 VAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFT 300 (497)
Q Consensus 235 ~~~G~aAglaa~F~APl~g~lf~~E~~~~~~~~~~~~~~~~~~~liasvia~~v~~~~~g~~~~f~ 300 (497)
+.+||+|-++++.|+|++++++++|++... + ...|.++++++|+.+++. +++++.|+
T Consensus 382 a~vGmaa~~a~v~~aPlt~ivlv~Eltg~~---~-----~~lpl~ia~~iA~~v~~~-~~~~~iY~ 438 (466)
T 3nd0_A 382 AIAGMGALVAATVRAPLTAILLTIEMTDNY---F-----VILPLLVTCLVASVVAEA-LGGKPIYT 438 (466)
T ss_dssp HHHTTSHHHHHHHSCHHHHHHHHHHTTCCC---T-----THHHHHHHHHHHHHHHTT-SCCCCHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHCCh---H-----HHHHHHHHHHHHHHHHHH-hCCCChHH
Confidence 889999999999999999999999997632 1 246789999999999986 55667664
No 8
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.15 E-value=4.9e-10 Score=123.59 Aligned_cols=170 Identities=19% Similarity=0.107 Sum_probs=126.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C-CchhHHHHhHHHHHHHHH-HHhccccccchHHHHH
Q 010949 309 AAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKF----G-LPPVVCPALGGLGAGIIA-LRYPGILYWGFTNVEE 382 (497)
Q Consensus 309 ~~~l~~~illG~~~Gl~g~~f~~~~~~~~~~~~~~~~~~----~-~~~~~~~~iggli~gll~-~~~P~~lg~G~~~~~~ 382 (497)
.+.+.+.+++|++.|+++.+|.+.+.++.++++.+.+.. + ..+++.+++++++.+.+. .+.|..-|+|-.+++.
T Consensus 8 ~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~ 87 (632)
T 3org_A 8 LRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKS 87 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHH
Confidence 355677889999999999999999998887654332211 1 123345566666666665 5679999999999988
Q ss_pred HHhcCC--CCCCchHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHhHHHHH--HHHHHHhhhCCCCCCccchH
Q 010949 383 ILHTGK--TASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGG--SAAEIINSAIPGNVAVAEPQ 458 (497)
Q Consensus 383 ~l~~~~--~~~~~~~~~l~~l~~~K~l~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~--~l~~~~~~~~p~~~~~~~p~ 458 (497)
.+++.. .....++ -..+.|++.+.+++++|.+.|...|+..+|+++|..+++ .+.... . +..+..
T Consensus 88 ~l~g~~~~~~~~~~~----~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~----~---~~~~~r 156 (632)
T 3org_A 88 ILSGFYDKMRSALEL----RVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELC----T---DRALRL 156 (632)
T ss_dssp HTTTTHHHHGGGGSH----HHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHH----H---SHHHHH
T ss_pred HHhCccccccccccH----HHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhcccc----C---CHHHHH
Confidence 776431 0011122 245689999999999999999999999999999997776 443211 0 012456
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 010949 459 AYALVGMAATLASVCSVPLTSVLLLFELTRD 489 (497)
Q Consensus 459 ~~alvGmaa~la~v~r~Plt~vvl~~Eltg~ 489 (497)
.+..+|+||-++++.++|++++++.+|....
T Consensus 157 ~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~ 187 (632)
T 3org_A 157 QTLAAACAVGLASSFGAPLGGVLYSIETIAS 187 (632)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhCCccHhHHHHHHHHHH
Confidence 7899999999999999999999999998753
No 9
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=31.66 E-value=32 Score=28.31 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhhCCccccccccCCCCchhhHHHHHHHHHHHH
Q 010949 278 IILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCG 323 (497)
Q Consensus 278 ~liasvia~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illG~~~G 323 (497)
.+++++.+.+..+.++ .+|.|++...+..++..+..+++.|++.+
T Consensus 53 a~~aa~ls~l~~nffF-~~P~~sf~i~~~~~~vt~~v~l~val~~s 97 (107)
T 2ksf_A 53 SVVATVINVVSFDLFF-IAPRGTLAVSDVQYLLTFAVMLTVGLVIG 97 (107)
T ss_dssp CSHHHHHHHHHHHHTT-SCSSCTTCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-cCCCccccccCHhHHHHHHHHHHHHHHHH
Confidence 3568888888888766 45888777555444445555556665544
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=18.92 E-value=1e+02 Score=21.31 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010949 315 YLILGMLCGVVSVVFTRLVAWFT 337 (497)
Q Consensus 315 ~illG~~~Gl~g~~f~~~~~~~~ 337 (497)
.|..|++.|++..+..-+..++-
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~ 33 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVY 33 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHHHHHHHH
Confidence 47788888888877666655543
Done!