RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010949
(497 letters)
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 260 bits (666), Expect = 9e-82
Identities = 100/450 (22%), Positives = 167/450 (37%), Gaps = 38/450 (8%)
Query: 59 PLSHSRSSSFDHHNYVDARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEW 118
+ L E A+L + ++G GL F+KGV +
Sbjct: 4 DTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQ 63
Query: 119 AWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMM----------HGLLEILNQIK 168
+ + L L + + G+ EI ++
Sbjct: 64 RMGALVHTADNYPLL------LTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALE 117
Query: 169 QSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFS-LMMENN 227
+ V K TLG G LG EGP+V IG + +
Sbjct: 118 DQRPVRWWRVLPV-------KFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKG 170
Query: 228 RERKIALVAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISST 287
E + L+A GAA+G+A+ FNA +AG F IE + R + + + ++S+
Sbjct: 171 DEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRY---TLISIKAVFIGVIMSTI 227
Query: 288 VSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKF 347
+ + + V L LYLILG++ G+ +F + V +
Sbjct: 228 MYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGN 287
Query: 348 GLPPVVCPALGGLGAGIIALRYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVV 407
V+ G G++ P GF + + +L + A+V+
Sbjct: 288 ITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATA-----GNFSMGMLVFIFVARVI 342
Query: 408 ATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAA 467
T LC SG GG++AP L +G +G FG A E+ E +A+ GM A
Sbjct: 343 TTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL------FPQYHLEAGTFAIAGMGA 396
Query: 468 TLASVCSVPLTSVLLLFELTRDYRILLPLM 497
LA+ PLT ++L+ E+T +Y+++LP++
Sbjct: 397 LLAASIRAPLTGIILVLEMTDNYQLILPMI 426
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 258 bits (660), Expect = 7e-81
Identities = 95/427 (22%), Positives = 174/427 (40%), Gaps = 32/427 (7%)
Query: 77 RDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRL 136
R+ + L+ ++GL +G+ A F V+ + +W + L
Sbjct: 18 RNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWR---------SQLAQILA 68
Query: 137 ADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLD------RQGFDLVAGVFPTIKA 190
L+ + G +V + L++ S + LV IK
Sbjct: 69 PIPPLAWLVTALISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKLPLVWQRVLPIKL 128
Query: 191 IQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIASGFNAA 250
+ ++LG G G EGP++ +G S + +E + L+A GA +G+A+ FNA
Sbjct: 129 VGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKATQENQRILIAVGAGAGLATAFNAP 188
Query: 251 VAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAA 310
+AG E + R++ + ++ V+++ + ++ G + ++ +
Sbjct: 189 LAGVALIGEEMHPRFRSQTLAYHS---LLFGCVMATIILRMIRGQSAIISLTEFKRVPLD 245
Query: 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYP 370
L +++ILG+L GV+ F R + FD + L L G GI++L
Sbjct: 246 SLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLP---PLATKWKGFLLGSIIGILSLFPL 302
Query: 371 GILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGA 430
+ G V + S L + + + T +C GSG +GG++AP L I +
Sbjct: 303 PLTDGGDNAVLWAFN-----SQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIAS 357
Query: 431 AVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDY 490
V + + EP A+ GM A +A+ PLT++LL E+T +Y
Sbjct: 358 IVSVAMARHFHLL------FPSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMTDNY 411
Query: 491 RILLPLM 497
++LPL+
Sbjct: 412 FVILPLL 418
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 211 bits (540), Expect = 9e-62
Identities = 93/430 (21%), Positives = 163/430 (37%), Gaps = 49/430 (11%)
Query: 90 LLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVT 149
L+ LLG+ + L + + VH + E + + ++ V
Sbjct: 10 LVCFLTLLGVTAALFIFAVDLAVHGLEEL-RMKISRLAGRFAG-------YILYVVSGVA 61
Query: 150 GGVIVGMM----------HGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGT 199
++ GL ++ + + R +L KA+ +G
Sbjct: 62 LCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLF---AKALGLICAIGG 118
Query: 200 GCSLGPEGPSVDIGKSCANGFSLMME-----NNRERKIALVAAGAASGIASGFNAAVAGC 254
G +G EGP+V I A+ F + +R ++ +AA A G+AS F A + G
Sbjct: 119 GLPVGWEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGV 178
Query: 255 FFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQS--AFTVPSYDLK--SAA 310
++IET+ +L+++ + V +L T AF ++D S
Sbjct: 179 LYSIETIAS-----FYLVQAFWKGVLSALSGAIVYELLYTTPLVEAFEGTNFDASDVSRT 233
Query: 311 ELPLYLILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYP 370
+ LY ILG L GV+ +F R V + + G + L A +
Sbjct: 234 QTLLYAILGALMGVLGALFIRCVRSIYELRM--RHYPGTNRYFLVGVVALFASALQY-PF 290
Query: 371 GILYWGFTNVEEILHTGKTASAPGIWLLTQLAAA---KVVATALCKGSGLVGGLYAPSLM 427
+ L + T+L K + AL G L G++ PS +
Sbjct: 291 RLFALDPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFL 350
Query: 428 IGAAVGAVFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELT 487
IGA G ++G E++ + P +YA+VG AA A V + L+ +++FE+T
Sbjct: 351 IGAGFGRLYG----ELMRVVFGNAI---VPGSYAVVGAAAFTAGV-TRALSCAVIIFEVT 402
Query: 488 RDYRILLPLM 497
R L+P++
Sbjct: 403 GQIRHLVPVL 412
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 2e-07
Identities = 51/382 (13%), Positives = 116/382 (30%), Gaps = 67/382 (17%)
Query: 43 QLDRRFSDRRITFKD--PPLSHSRSSSFDHHNYVDA-RDSLT---------ESAPPEWAL 90
+D + + +KD + +FD + D + L+ L
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 91 LLIGCLLGLASGLCVAFFNKGVHIIHEW---AWAGTPNEGAAWLRL-----QRLADTWHR 142
L LL + F + + I +++ + + R+ RL +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 143 ILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCS 202
V+ + L + L +++ + ++ G V G T A+ ++ C
Sbjct: 126 FAKYNVS---RLQPYLKLRQALLELRPAKNVLIDG---VLGSGKTWVALDVCLSYKVQCK 179
Query: 203 LGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAASGIAS---GFNAAVAGCFFAIE 259
+ + +++ + L M +I + ++ + +I+
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--------SIQ 231
Query: 260 TVLRPLRAENSPPFTTAMIILASVISSTV-------STVLLGTQSAFTVPSYDLKSAAEL 312
LR L P+ +++L +V ++ +LL T+ + +
Sbjct: 232 AELRRLLKS--KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 313 PLYLILGMLCGVVSVVFTR--LVAWFTKSFDFIKEKFGLPPVVC---P-ALGGLGAGIIA 366
L S+ T + + K D + LP V P L + +
Sbjct: 290 SL--------DHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLSIIAE---S 336
Query: 367 LR-YPGIL-YWGFTNVEEILHT 386
+R W N +++
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTI 358
Score = 31.7 bits (71), Expect = 0.66
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 19/95 (20%)
Query: 39 DLFKQ--LDRRFSDRRITFKDPPLSHSRSSS---FDHHNYVDARDSLTESAPPEWALL-- 91
LF+ LD RF +++I + S S Y + + ++ P L+
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY---KPYICDNDPKYERLVNA 547
Query: 92 LIGCLLGLASGLC---------VAFFNKGVHIIHE 117
++ L + L +A + I E
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 31.4 bits (70), Expect = 0.99
Identities = 24/186 (12%), Positives = 45/186 (24%), Gaps = 65/186 (34%)
Query: 4 DERRPLRSSNQEDL------ESAPDSPSNRTST-PSAAGGIKDLFKQLDRRFSDRRITFK 56
L + L D P +T P I + R +K
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNWK 348
Query: 57 DP---PLSHSRSSSFDHHNYVDARDSLTESAPPEWALLLIGCLLGLASGLCVAFFNKGVH 113
L+ SS + + R L + F H
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDR--------LSV--------------FPPSAH 386
Query: 114 IIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSL 173
I P L + W ++ V + ++N++ + S +
Sbjct: 387 I---------PTI-----LLSLI---WFDVIKSDV------------MVVVNKLHKYSLV 417
Query: 174 DRQGFD 179
++Q +
Sbjct: 418 EKQPKE 423
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 6e-05
Identities = 91/550 (16%), Positives = 148/550 (26%), Gaps = 178/550 (32%)
Query: 8 PLRSSNQEDLESAPDSPS----------NRTSTPSAAGGIKDLFKQLDRRFSDRRITFKD 57
P +D P +P+ + PS G + F + + D
Sbjct: 44 PTEGFAADD---EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 58 PPLSHSRSSSFDHH-------------NYVDARDSLTESAP-PEWALLLIGCLLGLASGL 103
H+ ++ NY+ AR + L G A
Sbjct: 101 I---HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ-- 155
Query: 104 CVAFFNKGVHIIHEWAWAGTPNEGAAWLR-LQRLADTWHRILLIPVTGGVIVGMMHGLLE 162
VA F G G ++ + L+ L T+H + G +I L E
Sbjct: 156 LVAIFG-G---------QGNTDD---YFEELRDLYQTYH-----VLVGDLIKFSAETLSE 197
Query: 163 ILNQIKQSSSLDRQGFDLV-----------------AGV-FPTIKAIQAA---VTLGTGC 201
++ + + QG +++ + P I IQ A VT
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT----A 253
Query: 202 SLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAG--AASGIASGFNAAVAGCF---F 256
L G + +S G + + LV A A + F +V F
Sbjct: 254 KLL--GFTPGELRSYLKGATGHSQ-------GLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 257 AIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSY-----DLKSA-- 309
I +R + P T+ + S++ ++ ++ VPS +L
Sbjct: 305 FI-----GVRCYEAYPNTS---LPPSILEDSL-------ENNEGVPSPMLSISNLTQEQV 349
Query: 310 --------AELP------LYLILGMLCGVVS---VVFTRLVAWFTKS------------F 340
+ LP + L+ G VVS L K+ F
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 341 DFIKEKFG---LP---PVVCPALGGLGAGIIA-LRYPGILYWGFTNVEE----ILHT--G 387
K KF LP P L I L + + ++ + T G
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA----KDIQIPVYDTFDG 465
Query: 388 K---TASAPGIWLLTQL---------AAAKVVAT-ALCKGSGLVGGLYAPSLMIGAAVGA 434
S + + AT L G G GL G
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL-------GVLTHR 518
Query: 435 VFGGSAAEII 444
G+ +I
Sbjct: 519 NKDGTGVRVI 528
Score = 40.8 bits (95), Expect = 0.001
Identities = 48/281 (17%), Positives = 82/281 (29%), Gaps = 94/281 (33%)
Query: 219 GFSL--MMENNRERKIALVAAGAASG--IASGFNAAVAGCFFAIETVLRPLRAENSPPFT 274
GFS+ ++ NN + G G I ++A ET++ + + F
Sbjct: 1658 GFSILDIVINNPVNLT--IHFGGEKGKRIRENYSA------MIFETIVDG-KLKTEKIFK 1708
Query: 275 TAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILGMLCGVVSVVFTRLVA 334
S + +L TQ FT P A + ++
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQ--FTQP-------A------LT-----LMEKAAFED-- 1746
Query: 335 WFTKSFDFIKEKFGLPPVVCPALGG--LG--------AGIIAL-------RYPGILYWGF 377
+K K +P A G LG A ++++ Y G+
Sbjct: 1747 --------LKSKGLIPADATFA--GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 378 TNVEEILHT--GKTASAPG-IWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGA 434
+E+ + G A PG + A + V + K +G +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL---------------- 1840
Query: 435 VFGGSAAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSV 475
EI+N + Q Y G L +V +V
Sbjct: 1841 ------VEIVNYNVEN-------QQYVAAGDLRALDTVTNV 1868
Score = 34.3 bits (78), Expect = 0.10
Identities = 47/317 (14%), Positives = 82/317 (25%), Gaps = 150/317 (47%)
Query: 27 RTSTPSAAGGIKDLFKQLDRR------FSDRRITFKDPPLS------------HSRSSSF 68
++ +A +D++ + D FS I +P S+
Sbjct: 1636 YKTSKAA----QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 69 DHHNYVDARD-------------------------SLTESAPPEWALLLIGCLLGLASGL 103
VD + S T+ P AL L+
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP--ALTLME--------- 1740
Query: 104 CVAFF----NKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHG 159
A F +KG+ I + +AG H
Sbjct: 1741 -KAAFEDLKSKGL-IPADATFAG------------------H------------------ 1762
Query: 160 LLEILNQIKQSSSLDRQG-FD-LV--AGVFP---TIK-------AIQAAVTLGTGCSLGP 205
SL G + L A V ++ +Q AV
Sbjct: 1763 ------------SL---GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 206 EGPSVDIGKSCANGFSLMMENNRERKIALVA-AGAASG----IASGFNAA-----VAGCF 255
+++ G+ A+ ++E +V G +G I +N AG
Sbjct: 1808 GMIAINPGRVAASF-------SQEALQYVVERVGKRTGWLVEIV-NYNVENQQYVAAGDL 1859
Query: 256 FAIET---VLRPLRAEN 269
A++T VL ++ +
Sbjct: 1860 RALDTVTNVLNFIKLQK 1876
Score = 30.0 bits (67), Expect = 2.0
Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 54/194 (27%)
Query: 262 LRPL-----RAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYL 316
RPL E+ TA +AS + + +L F + + AEL +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFA-ADDEPTTPAEL-VGK 63
Query: 317 ILGMLCGVVS----VVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGI 372
LG + +V F +++ F+ + L G
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFE---NCY---------LEG------------- 98
Query: 373 LYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVAT--ALCKGSGLVGGLYAPSLMIGA 430
+I H A T + +++ + + S + A
Sbjct: 99 --------NDI-HA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 431 A------VGAVFGG 438
+ A+FGG
Sbjct: 149 VGEGNAQLVAIFGG 162
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.042
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 18/39 (46%)
Query: 5 ERRPLRSSNQEDLES-----APDSPSNRTSTPSAAGGIK 38
E++ L+ L++ A D S P+ A IK
Sbjct: 18 EKQALKK-----LQASLKLYADD------SAPALA--IK 43
Score = 30.7 bits (68), Expect = 0.66
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 4/16 (25%)
Query: 421 LY----APSLMIGAAV 432
LY AP+L I A +
Sbjct: 31 LYADDSAPALAIKATM 46
Score = 30.3 bits (67), Expect = 0.88
Identities = 5/26 (19%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 258 IETVLRPLRAENSPPFTTAMIILASV 283
++ L+ +++P A+ I A++
Sbjct: 25 LQASLKLYADDSAP----ALAIKATM 46
Score = 28.0 bits (61), Expect = 5.2
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 229 ERKIALVAAGAASGIASGFNAAV 251
+ + L A +A +A A +
Sbjct: 26 QASLKLYADDSAPALA--IKATM 46
>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A
{Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A
2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A*
2zly_A* 2zm9_A* 2zm2_A*
Length = 392
Score = 29.8 bits (67), Expect = 2.2
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 368 RYPGILYWGFTNVEEILHTGKTASAPGIWLLTQLAAAKVVATAL 411
+ P W F ++ E++ + + P LA +A L
Sbjct: 27 QEPPHNRWAFAHLGEMVPSAAVSRRPVNAPGHALARLGAIAAQL 70
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein,
transporter, enzyme IIC, phosphoenolpyruva
phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A
{Bacillus cereus}
Length = 442
Score = 29.2 bits (66), Expect = 3.6
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 5/117 (4%)
Query: 266 RAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLY--LILGMLCG 323
+ + L + + +T V D A L L + M+
Sbjct: 94 EYYKVDALASGALSLVTFLLATPFQVAYIMPGTKESILVDGVIPAALMGSQGLFVAMIIA 153
Query: 324 VVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTNV 380
++S + + + IK +PP V + L G I + I+ F +
Sbjct: 154 IIST---EIYRFLVQKKMIIKMPETVPPAVTRSFAALIPGFIVVTVVWIIRLIFEHT 207
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 29.0 bits (64), Expect = 4.0
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 112 VHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSS 171
+++++EWA G ++ + ++ G +V ++ L EI ++K +S
Sbjct: 922 MNVVYEWA------RGLSFKEIMEMSP---------EAEGTVVRVITWLDEICREVKTAS 966
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 28.1 bits (63), Expect = 7.7
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 12/83 (14%)
Query: 316 LILGMLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYW 375
L + + + L DF G+ GL II +
Sbjct: 380 LWTAAIVFFSAHLVMFLNKSLD-EMDFWAGTIGVV------FFGLTELIIFFWI-----F 427
Query: 376 GFTNVEEILHTGKTASAPGIWLL 398
G E ++ G P I+
Sbjct: 428 GADKAWEEINRGGIIKVPRIYYY 450
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,705,864
Number of extensions: 490912
Number of successful extensions: 1073
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1024
Number of HSP's successfully gapped: 33
Length of query: 497
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 399
Effective length of database: 3,965,535
Effective search space: 1582248465
Effective search space used: 1582248465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.1 bits)