RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 010949
         (497 letters)



>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score =  173 bits (438), Expect = 3e-49
 Identities = 97/418 (23%), Positives = 162/418 (38%), Gaps = 32/418 (7%)

Query: 88  WALLLIGCLLGLASGLCVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIP 147
            A+L +  ++G   GL    F+KGV  +                 L   AD +  +L + 
Sbjct: 17  LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGA----------LVHTADNYPLLLTVA 66

Query: 148 VTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTI-------KAIQAAVTLGTG 200
                ++ M    L      +   S   +    +    P         K      TLG G
Sbjct: 67  FLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGG 126

Query: 201 CSLGPEGPSVDIGKSCANGFS-LMMENNRERKIALVAAGAASGIASGFNAAVAGCFFAIE 259
             LG EGP+V IG +       +      E +  L+A GAA+G+A+ FNA +AG  F IE
Sbjct: 127 MVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIE 186

Query: 260 TVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPSYDLKSAAELPLYLILG 319
            +    R       +   + +  ++S+ +  +     +   V          L LYLILG
Sbjct: 187 EMRPQFR---YTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILG 243

Query: 320 MLCGVVSVVFTRLVAWFTKSFDFIKEKFGLPPVVCPALGGLGAGIIALRYPGILYWGFTN 379
           ++ G+   +F + V         +        V+     G   G++    P     GF  
Sbjct: 244 IIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNL 303

Query: 380 VEEILHTGKTASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGS 439
           +        +        + +     V+ T LC  SG  GG++AP L +G  +G  FG  
Sbjct: 304 IPIATAGNFSMGMLVFIFVAR-----VITTLLCFSSGAPGGIFAPMLALGTVLGTAFG-- 356

Query: 440 AAEIINSAIPGNVAVAEPQAYALVGMAATLASVCSVPLTSVLLLFELTRDYRILLPLM 497
              +     P      E   +A+ GM A LA+    PLT ++L+ E+T +Y+++LP++
Sbjct: 357 --MVAVELFPQYHL--EAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMI 410


>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
           {Escherichia coli [TaxId: 562]}
          Length = 320

 Score = 26.6 bits (58), Expect = 7.7
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 8/33 (24%)

Query: 223 MMENNRERKIALVAAGAASGIASGFNAAVAGCF 255
           M+     +KI ++ +G   G A G NAA+ G  
Sbjct: 1   MI-----KKIGVLTSG---GDAPGMNAAIRGVV 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0384    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,799,319
Number of extensions: 83532
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 4
Length of query: 497
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 408
Effective length of database: 1,185,626
Effective search space: 483735408
Effective search space used: 483735408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.9 bits)