Query 010950
Match_columns 497
No_of_seqs 193 out of 778
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02435 probable UDP-N-acetyl 100.0 3E-128 7E-133 1020.7 44.9 493 1-497 1-493 (493)
2 PTZ00339 UDP-N-acetylglucosami 100.0 3E-114 7E-119 916.4 40.9 458 29-494 2-480 (482)
3 KOG2388 UDP-N-acetylglucosamin 100.0 3E-106 7E-111 832.2 25.7 461 24-496 2-470 (477)
4 PLN02830 UDP-sugar pyrophospho 100.0 3E-87 6.5E-92 726.2 39.5 425 19-457 21-485 (615)
5 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 1.1E-86 2.4E-91 679.7 29.0 314 106-427 2-323 (323)
6 cd00897 UGPase_euk Eukaryotic 100.0 3E-81 6.6E-86 630.3 27.7 285 118-428 2-289 (300)
7 PLN02474 UTP--glucose-1-phosph 100.0 6.8E-81 1.5E-85 656.7 30.4 379 65-483 27-410 (469)
8 cd06424 UGGPase UGGPase cataly 100.0 6.1E-81 1.3E-85 630.1 27.2 295 120-426 1-314 (315)
9 PF01704 UDPGP: UTP--glucose-1 100.0 2.2E-81 4.7E-86 658.5 14.9 362 64-454 2-381 (420)
10 COG4284 UDP-glucose pyrophosph 100.0 2.1E-77 4.5E-82 619.9 25.5 438 23-495 13-469 (472)
11 cd04180 UGPase_euk_like Eukary 100.0 1.6E-66 3.4E-71 519.1 27.3 261 120-425 1-266 (266)
12 KOG2638 UDP-glucose pyrophosph 100.0 2.3E-59 4.9E-64 472.7 26.1 343 63-444 53-401 (498)
13 COG1207 GlmU N-acetylglucosami 99.7 1.6E-15 3.5E-20 156.5 20.3 250 119-457 2-258 (460)
14 PRK14356 glmU bifunctional N-a 99.1 2.1E-08 4.5E-13 107.6 25.1 181 119-368 5-189 (456)
15 PRK15480 glucose-1-phosphate t 99.1 6.7E-09 1.4E-13 105.7 18.2 182 119-366 3-187 (292)
16 TIGR01105 galF UTP-glucose-1-p 99.0 1.1E-08 2.5E-13 104.2 17.7 189 119-366 3-225 (297)
17 PRK14359 glmU bifunctional N-a 99.0 7.5E-08 1.6E-12 102.4 24.2 243 119-456 2-248 (430)
18 TIGR02092 glgD glucose-1-phosp 99.0 7.5E-09 1.6E-13 108.2 15.8 193 118-368 1-203 (369)
19 TIGR01207 rmlA glucose-1-phosp 99.0 1.2E-08 2.7E-13 103.4 16.7 178 122-365 2-182 (286)
20 PRK14360 glmU bifunctional N-a 99.0 5.8E-08 1.3E-12 103.9 20.8 248 120-455 2-250 (450)
21 PF00483 NTP_transferase: Nucl 98.9 1.8E-08 3.9E-13 98.7 14.9 184 122-368 2-192 (248)
22 PRK14357 glmU bifunctional N-a 98.9 7.5E-08 1.6E-12 103.1 20.8 177 121-368 2-179 (448)
23 cd02538 G1P_TT_short G1P_TT_sh 98.9 3.7E-08 8E-13 96.6 16.1 179 121-365 2-183 (240)
24 PRK05293 glgC glucose-1-phosph 98.9 4.3E-08 9.2E-13 102.8 17.3 196 118-368 2-205 (380)
25 cd04197 eIF-2B_epsilon_N The N 98.9 4E-08 8.7E-13 95.1 15.2 159 122-332 3-177 (217)
26 PRK00844 glgC glucose-1-phosph 98.9 4.9E-08 1.1E-12 103.7 16.7 203 118-368 4-212 (407)
27 cd04189 G1P_TT_long G1P_TT_lon 98.9 1.1E-07 2.4E-12 92.7 17.5 177 121-366 2-181 (236)
28 cd06428 M1P_guanylylT_A_like_N 98.9 7.7E-08 1.7E-12 95.5 16.7 183 122-367 1-191 (257)
29 PRK10122 GalU regulator GalF; 98.9 1.2E-07 2.6E-12 96.8 18.2 187 119-366 3-225 (297)
30 cd06425 M1P_guanylylT_B_like_N 98.8 9.1E-08 2E-12 93.4 16.0 180 122-366 3-186 (233)
31 PRK14358 glmU bifunctional N-a 98.8 3.9E-07 8.5E-12 98.9 22.4 177 119-361 7-184 (481)
32 cd02540 GT2_GlmU_N_bac N-termi 98.8 5.3E-07 1.1E-11 87.2 20.8 181 122-368 1-182 (229)
33 COG1208 GCD1 Nucleoside-diphos 98.8 1.7E-07 3.6E-12 98.1 17.7 179 120-364 2-184 (358)
34 cd06422 NTP_transferase_like_1 98.8 1.3E-07 2.8E-12 91.4 15.6 174 122-366 2-180 (221)
35 TIGR02623 G1P_cyt_trans glucos 98.8 2E-07 4.2E-12 92.8 16.3 188 122-364 2-196 (254)
36 cd06915 NTP_transferase_WcbM_l 98.8 1.9E-07 4E-12 89.6 15.5 177 122-366 1-180 (223)
37 PRK14355 glmU bifunctional N-a 98.8 1.8E-06 3.9E-11 93.0 24.3 185 119-368 3-188 (459)
38 PRK14352 glmU bifunctional N-a 98.8 3.1E-07 6.6E-12 99.6 18.4 187 119-368 4-191 (482)
39 cd04181 NTP_transferase NTP_tr 98.7 2.7E-07 5.8E-12 88.2 15.4 175 122-364 1-178 (217)
40 cd06426 NTP_transferase_like_2 98.7 3.9E-07 8.5E-12 87.7 16.1 172 122-365 1-175 (220)
41 PLN02241 glucose-1-phosphate a 98.7 2.4E-07 5.1E-12 99.4 15.9 214 118-368 2-231 (436)
42 cd02509 GDP-M1P_Guanylyltransf 98.7 4.1E-07 8.9E-12 91.7 16.6 196 121-370 2-209 (274)
43 TIGR01208 rmlA_long glucose-1- 98.7 7.8E-07 1.7E-11 92.4 17.8 178 122-366 2-182 (353)
44 PLN02917 CMP-KDO synthetase 98.7 6.8E-07 1.5E-11 91.1 16.9 222 118-425 46-276 (293)
45 PRK00725 glgC glucose-1-phosph 98.7 7E-07 1.5E-11 95.5 17.6 200 119-368 15-224 (425)
46 PRK02862 glgC glucose-1-phosph 98.7 7.6E-07 1.6E-11 95.3 17.3 202 119-368 3-225 (429)
47 KOG1322 GDP-mannose pyrophosph 98.6 1.6E-06 3.4E-11 87.8 17.6 187 118-367 8-198 (371)
48 TIGR01099 galU UTP-glucose-1-p 98.6 7.4E-07 1.6E-11 88.4 14.9 200 121-367 2-214 (260)
49 PRK14353 glmU bifunctional N-a 98.6 1.4E-06 3.1E-11 93.2 17.3 185 118-368 4-189 (446)
50 PRK05450 3-deoxy-manno-octulos 98.6 8.6E-07 1.9E-11 87.0 14.3 186 119-368 2-194 (245)
51 PRK13389 UTP--glucose-1-phosph 98.6 1.8E-06 4E-11 88.3 16.6 201 120-364 9-226 (302)
52 PRK14354 glmU bifunctional N-a 98.6 1.1E-05 2.5E-10 86.5 23.4 183 119-368 2-185 (458)
53 cd02508 ADP_Glucose_PP ADP-glu 98.6 1.5E-06 3.3E-11 83.0 14.8 137 122-299 1-143 (200)
54 cd02524 G1P_cytidylyltransfera 98.6 1.5E-06 3.3E-11 86.1 15.3 187 122-366 1-199 (253)
55 TIGR01173 glmU UDP-N-acetylglu 98.5 1.5E-05 3.2E-10 85.2 23.3 179 121-368 2-181 (451)
56 COG1209 RfbA dTDP-glucose pyro 98.5 5.2E-06 1.1E-10 82.5 16.9 174 122-364 3-181 (286)
57 cd02523 PC_cytidylyltransferas 98.5 2.4E-06 5.2E-11 83.0 14.3 175 122-368 1-178 (229)
58 cd02541 UGPase_prokaryotic Pro 98.5 2.9E-06 6.3E-11 84.6 14.6 186 121-366 2-213 (267)
59 cd02517 CMP-KDO-Synthetase CMP 98.5 6.4E-06 1.4E-10 80.5 16.7 184 119-368 1-191 (239)
60 KOG1460 GDP-mannose pyrophosph 98.4 3.4E-06 7.5E-11 84.2 13.4 259 119-447 2-269 (407)
61 PRK09451 glmU bifunctional N-a 98.4 6.6E-06 1.4E-10 88.5 16.6 180 119-368 5-185 (456)
62 TIGR02091 glgC glucose-1-phosp 98.3 1.1E-05 2.3E-10 84.0 15.5 197 122-368 1-206 (361)
63 cd04198 eIF-2B_gamma_N The N-t 98.3 8.1E-06 1.8E-10 79.0 13.3 133 122-305 3-139 (214)
64 TIGR01479 GMP_PMI mannose-1-ph 98.3 1.5E-05 3.3E-10 86.4 16.7 195 122-369 3-210 (468)
65 cd02507 eIF-2B_gamma_N_like Th 98.0 7.3E-05 1.6E-09 72.5 13.1 164 122-334 3-180 (216)
66 cd04183 GT2_BcE_like GT2_BcbE_ 98.0 0.0002 4.3E-09 69.5 15.9 37 122-161 1-40 (231)
67 PRK13368 3-deoxy-manno-octulos 98.0 0.00036 7.8E-09 68.1 17.0 178 119-366 2-187 (238)
68 PF12804 NTP_transf_3: MobA-li 97.9 0.00011 2.5E-09 67.0 11.7 97 122-278 1-98 (160)
69 COG0448 GlgC ADP-glucose pyrop 97.9 0.00015 3.2E-09 75.8 12.8 201 118-371 4-212 (393)
70 TIGR00454 conserved hypothetic 97.9 0.00011 2.3E-09 69.9 10.8 61 121-202 2-62 (183)
71 cd02513 CMP-NeuAc_Synthase CMP 97.9 0.00071 1.5E-08 65.1 16.5 186 119-366 1-189 (223)
72 cd04182 GT_2_like_f GT_2_like_ 97.8 0.00016 3.4E-09 67.2 9.8 38 120-162 1-38 (186)
73 COG1213 Predicted sugar nucleo 97.7 7.5E-05 1.6E-09 73.0 6.7 67 120-205 4-70 (239)
74 TIGR03310 matur_ygfJ molybdenu 97.6 0.00038 8.2E-09 65.1 10.5 36 122-162 2-37 (188)
75 PRK13385 2-C-methyl-D-erythrit 97.6 0.00011 2.4E-09 71.9 6.5 66 119-202 2-67 (230)
76 PF01128 IspD: 2-C-methyl-D-er 97.6 0.00012 2.6E-09 71.7 6.6 65 120-202 1-65 (221)
77 PLN02728 2-C-methyl-D-erythrit 97.5 0.00024 5.2E-09 70.9 6.8 42 118-162 23-64 (252)
78 cd02516 CDP-ME_synthetase CDP- 97.5 0.0008 1.7E-08 64.6 10.2 40 120-162 1-40 (218)
79 TIGR00466 kdsB 3-deoxy-D-manno 97.5 0.005 1.1E-07 60.8 16.0 180 122-368 2-194 (238)
80 COG0746 MobA Molybdopterin-gua 97.4 0.0015 3.3E-08 62.6 11.0 37 119-161 4-40 (192)
81 TIGR03202 pucB xanthine dehydr 97.4 0.0011 2.4E-08 62.6 9.6 36 121-161 2-37 (190)
82 PRK14489 putative bifunctional 97.3 0.0017 3.7E-08 68.3 10.6 39 119-161 5-43 (366)
83 TIGR00453 ispD 2-C-methyl-D-er 97.2 0.00055 1.2E-08 66.0 5.5 39 121-162 1-39 (217)
84 COG2266 GTP:adenosylcobinamide 97.2 0.00086 1.9E-08 62.8 6.3 60 121-202 2-61 (177)
85 PRK09382 ispDF bifunctional 2- 97.1 0.01 2.2E-07 62.8 14.3 41 119-162 5-45 (378)
86 PRK00560 molybdopterin-guanine 97.1 0.00056 1.2E-08 65.5 4.4 40 117-161 6-46 (196)
87 COG1211 IspD 4-diphosphocytidy 97.1 0.0031 6.8E-08 62.1 9.6 66 118-201 3-68 (230)
88 PRK00155 ispD 2-C-methyl-D-ery 97.0 0.0014 3E-08 63.7 6.2 41 119-162 3-43 (227)
89 cd02518 GT2_SpsF SpsF is a gly 96.9 0.014 3E-07 56.9 12.8 60 122-202 2-62 (233)
90 cd02503 MobA MobA catalyzes th 96.9 0.00083 1.8E-08 62.7 3.5 37 121-162 2-38 (181)
91 PRK15460 cpsB mannose-1-phosph 96.9 0.03 6.6E-07 61.0 15.9 195 119-369 5-219 (478)
92 TIGR02665 molyb_mobA molybdopt 96.8 0.0011 2.3E-08 62.2 3.8 38 120-161 1-38 (186)
93 PRK02726 molybdopterin-guanine 96.8 0.0012 2.5E-08 63.4 4.0 38 119-161 7-44 (200)
94 PRK00317 mobA molybdopterin-gu 96.8 0.0014 3E-08 62.1 4.1 39 119-161 3-41 (193)
95 COG0836 {ManC} Mannose-1-phosp 96.7 0.047 1E-06 56.0 14.6 198 120-369 2-212 (333)
96 PRK14500 putative bifunctional 96.6 0.0021 4.5E-08 67.2 4.5 40 117-161 158-197 (346)
97 PRK14490 putative bifunctional 96.6 0.0039 8.4E-08 65.6 6.2 39 118-161 173-211 (369)
98 COG1210 GalU UDP-glucose pyrop 96.0 0.2 4.3E-06 50.4 14.6 161 121-333 6-194 (291)
99 COG4750 LicC CTP:phosphocholin 95.6 0.015 3.3E-07 55.4 4.5 60 122-202 3-65 (231)
100 TIGR03584 PseF pseudaminic aci 93.8 1.2 2.6E-05 43.5 13.1 181 122-365 2-185 (222)
101 COG2068 Uncharacterized MobA-r 93.3 0.11 2.4E-06 50.0 4.6 119 117-290 3-121 (199)
102 COG1212 KdsB CMP-2-keto-3-deox 82.3 5.1 0.00011 39.5 7.4 90 119-225 3-106 (247)
103 PF14134 DUF4301: Domain of un 81.6 8.6 0.00019 42.0 9.5 67 206-282 230-299 (513)
104 COG1861 SpsF Spore coat polysa 73.0 64 0.0014 31.9 11.9 118 118-298 2-125 (241)
105 PF14969 DUF4508: Domain of un 68.4 5 0.00011 34.3 2.9 37 37-73 59-96 (98)
106 KOG1462 Translation initiation 62.8 4.6 0.0001 42.7 2.0 64 120-202 10-76 (433)
107 PF02348 CTP_transf_3: Cytidyl 61.9 30 0.00066 32.8 7.4 35 122-162 2-36 (217)
108 TIGR03092 SASP_sspI small, aci 47.1 19 0.00041 28.5 2.6 40 22-61 12-62 (65)
109 TIGR02180 GRX_euk Glutaredoxin 46.0 69 0.0015 25.1 6.0 56 182-261 28-83 (84)
110 PF14098 SSPI: Small, acid-sol 41.5 29 0.00063 27.5 2.9 41 21-61 12-63 (65)
111 PRK02955 small acid-soluble sp 39.8 31 0.00067 27.6 2.8 40 22-61 15-65 (68)
112 PHA03050 glutaredoxin; Provisi 37.7 1.3E+02 0.0028 26.0 6.7 49 192-264 53-101 (108)
113 TIGR02189 GlrX-like_plant Glut 30.0 2.4E+02 0.0052 23.7 7.1 34 218-263 59-92 (99)
114 KOG0734 AAA+-type ATPase conta 27.1 53 0.0012 36.6 3.0 55 131-204 330-393 (752)
115 COG0641 AslB Arylsulfatase reg 26.4 1.2E+02 0.0025 32.4 5.5 119 134-278 120-240 (378)
116 CHL00195 ycf46 Ycf46; Provisio 26.1 4.5E+02 0.0098 29.0 10.1 50 23-76 142-191 (489)
117 PRK10834 vancomycin high tempe 23.5 43 0.00094 33.4 1.5 85 109-209 71-163 (239)
118 TIGR02664 nitr_red_assoc conse 23.3 2.3E+02 0.005 26.1 5.9 25 34-58 25-49 (145)
119 PF10662 PduV-EutP: Ethanolami 22.9 55 0.0012 30.0 1.9 30 442-483 108-137 (143)
120 PF11460 DUF3007: Protein of u 22.8 67 0.0014 27.9 2.3 29 32-60 75-103 (104)
121 PF09655 Nitr_red_assoc: Conse 22.6 1.3E+02 0.0029 27.6 4.3 28 31-58 22-49 (144)
122 KOG1752 Glutaredoxin and relat 21.7 4.2E+02 0.0091 22.9 7.0 56 185-264 44-99 (104)
123 PF13945 NST1: Salt tolerance 21.4 40 0.00086 32.4 0.7 32 36-71 103-134 (190)
No 1
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=3.2e-128 Score=1020.69 Aligned_cols=493 Identities=88% Similarity=1.401 Sum_probs=453.9
Q ss_pred CCCCceeeecccCCCCCCCCCCCCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 010950 1 MREPTVVGTESNGGSVGSIAQSPPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQGL 80 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gQ~Hll~~~~~l~~~ek~~l~~ql~~iD~~~~~~~~~~~l~~~~~ 80 (497)
|.||.|-. .++..-++|..- +.++|+++|.++||+|||+||++|+++||++|++||+++|++++..++++++..++.
T Consensus 1 ~~~~~~~~--~~~~~~~~~~~~-~~~~l~~~l~~~gQ~HLl~~w~~ls~~e~~~L~~qL~~iD~~~l~~~~~~~~~~~~~ 77 (493)
T PLN02435 1 MKEPVVEN--EAVTAPGPWGAA-PPQALLERLKDYGQEDAFALWDELSPEERDLLVRDIESLDLPRIDRIIRCSLRSQGL 77 (493)
T ss_pred CCcccccc--ccCCCCCCCCcc-cHHHHHHHHHHcChHHHHHhhhhCCHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Confidence 78886643 345555778764 456899999999999999999999999999999999999999999999888765555
Q ss_pred CCCCcccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHH
Q 010950 81 PVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERI 160 (497)
Q Consensus 81 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i 160 (497)
+++.++|+|++.+.++++.+.++.++|++.|+++|++||||||+||||||||||+++|||||+|++|++|||||++++||
T Consensus 78 ~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I 157 (493)
T PLN02435 78 PVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERI 157 (493)
T ss_pred chhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHH
Confidence 77889999988888887776667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCcccc
Q 010950 161 LCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAK 240 (497)
Q Consensus 161 ~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~ 240 (497)
+++|+++.+..+.. ..+++.||||||||+.||++|++||++|+|||+++++|+||+|+++||++.+|+++|+++++++|
T Consensus 158 ~~lq~la~~~~~~~-~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~ 236 (493)
T PLN02435 158 LCVQRLAAQASSEG-PGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAK 236 (493)
T ss_pred HHHHHHHHhhcccc-cCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCccccc
Confidence 99999998765311 12578999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCC
Q 010950 241 APDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKG 320 (497)
Q Consensus 241 ~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~ 320 (497)
+|+||||+|.+|+++|+|++|.++|++|+||+||||+|++++||.|||||+.++++|++||++|+.|+|+||+||+.+.+
T Consensus 237 ~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~ 316 (493)
T PLN02435 237 APDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG 316 (493)
T ss_pred CCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996568
Q ss_pred CCeEEEEeccCChhhhhhccccCCcccccccceeeEEEehHHHHHHhhccccCccceeeecccCccCCCcccchhhhhHh
Q 010950 321 GPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIF 400 (497)
Q Consensus 321 g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~~~~~~klE~fif 400 (497)
|+++||||+|+++++++.+++++|++.|++||||||||+++||+++++..+..+|||+|+|||||+|+.+||+|||+|||
T Consensus 317 g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H~A~Kkip~~~~~~ngiK~E~FiF 396 (493)
T PLN02435 317 GPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYHLAEKKIPSIHGYTMGLKLEQFIF 396 (493)
T ss_pred CCEEEEEeccCCHHHHhccCccccccccchhhHHHhhccHHHHHHHHHhhhhcCCceeeccccCccCCCcceEEeeeeee
Confidence 99999999999999988777667999999999999999999999998766667999999999999999999999999999
Q ss_pred hcCcCCCceeEEEEecCccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCceeccCCCCccCeEEecccCcccccch
Q 010950 401 DAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENL 480 (497)
Q Consensus 401 D~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~~~~~~l~~~G~~~~~~~~~~~~~ieispl~sy~Ge~l 480 (497)
|+|++++++.+++|+|++|||||||++|.+.|||+|||++|+++|+|||+++|+.+.++.+.....|||||++||+||||
T Consensus 397 Dvf~~a~~~~~~eV~R~~EFaPlKN~~g~~~Dsp~tar~~l~~~~~~wl~~aG~~~~~~~~~~~~~vEisP~~sY~gE~L 476 (493)
T PLN02435 397 DAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPESARLLVLRLHTRWVVAAGGFLTHSVPLYATGVEVSPLCSYAGENL 476 (493)
T ss_pred cchhhcCceEEEEEchhhccCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCEecCCccccCCcEEeCCceeeCCCCc
Confidence 99999999999999999999999999999899999999999999999999999987533321234699999999999999
Q ss_pred hhhhCCceecCCccccC
Q 010950 481 EAICRGRTFHAPCEIGF 497 (497)
Q Consensus 481 ~~~~~~~~~~~p~~i~~ 497 (497)
+.+++|++|+.|.+++|
T Consensus 477 ~~~~~~~~~~~~~~~~~ 493 (493)
T PLN02435 477 EAICRGRTFHAPCEISF 493 (493)
T ss_pred hhhcCCCeecCceeecC
Confidence 99999999999999876
No 2
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=3.3e-114 Score=916.42 Aligned_cols=458 Identities=37% Similarity=0.596 Sum_probs=413.8
Q ss_pred HHHHHHCCCchhccccccCCHHHHHHHHHHH-h---cCChHHHHHHHHHHHhcC---C--------CCCCCcccCCCCCc
Q 010950 29 LERLKDYGQEDAFALWDELSPDERDHLVKDI-E---SLDLPRVDRIIRCSLRSQ---G--------LPVAAIEPVPERSV 93 (497)
Q Consensus 29 ~~~l~~~gQ~Hll~~~~~l~~~ek~~l~~ql-~---~iD~~~~~~~~~~~l~~~---~--------~~~~~~~p~p~~~~ 93 (497)
+++|.++||+|||+||++|+++||++|.+|| + .+|++.++.+++.+.... . ...+.++|+|...+
T Consensus 2 ~~~l~~~gQ~hl~~~~~~l~~~e~~~l~~ql~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 81 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKRRSEGEFTPLATQILSSLTNVDFKHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEPPNNNTF 81 (482)
T ss_pred hhhhhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHhhhhhcccccccccccccccccCCCCcccc
Confidence 5789999999999999999999999999999 5 899999999998765321 1 12356899998777
Q ss_pred cccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcC
Q 010950 94 STVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSE 173 (497)
Q Consensus 94 ~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~ 173 (497)
.++.+ ..++..+|++.|+++|++||||+|+||||+|||||++.||||+||+++++|||||++++||++++.++.++++.
T Consensus 82 ~~~~~-~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~ 160 (482)
T PTZ00339 82 IDIYE-KEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGG 160 (482)
T ss_pred ccccc-CHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhccccc
Confidence 66665 35677899999999999999999999999999999999999999999999999999999999999998665431
Q ss_pred CCCCCCcceeEEEecCCCchHHHHHHHhhcCCCCCCCCcEEEEEcCCcceeec-CCceeecCCCccccccCCCchhhHhh
Q 010950 174 GGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK-DGRFIMETPYKVAKAPDGNGGVYSAL 252 (497)
Q Consensus 174 ~~~~~~~~ipl~IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~-~g~~~l~~~~~~~~~P~GhGgi~~aL 252 (497)
.+++.||||||||++||+.|++||++|+|||+++++|+||.|+++||++. +|+++++++++++|+|+||||+|.+|
T Consensus 161 ---~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL 237 (482)
T PTZ00339 161 ---GDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKAL 237 (482)
T ss_pred ---ccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHH
Confidence 24678999999999999999999999999999999999999999999985 59999999999999999999999999
Q ss_pred hhccHHHHHHHcCceEEEEEeCCcccccccCHHHHHHHhhcCC-cEEEEEeecCCCCCccceEEEecCCCCeEEEEeccC
Q 010950 253 KSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGV-SAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSEL 331 (497)
Q Consensus 253 ~~sg~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~-~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel 331 (497)
+++|+|++|.++|++|+||+||||+|++++||.||||++.+++ +++.+|+ |+.|+|+||+||+. +|+++||||+|+
T Consensus 238 ~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~--~g~~~vvEYsEi 314 (482)
T PTZ00339 238 AKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KREDDESVGVFCLK--DYEWQVVEYTEI 314 (482)
T ss_pred HHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeee-cCCCCCceeEEEEe--CCcccEEEEecc
Confidence 9999999999999999999999999999999999999999999 8889998 88999999999997 789999999999
Q ss_pred ChhhhhhccccCCcccccccceeeEEEehHHHHHHhh-ccccCccceeeecccCccC---CCcccchhhhhHhhcCcCCC
Q 010950 332 DPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN-GLEKDSVYHLAEKKIPSIH---GQTVGFKLEQFIFDAFPYAP 407 (497)
Q Consensus 332 ~~~~~~~~~~~~g~~~f~~gNi~~~~f~l~fL~~~~~-~~~~~lp~h~a~Kki~~~~---~~~~~~klE~fifD~~~~~~ 407 (497)
+++.++..+..+|.++|++||||||||+++||+++++ .....||||+|+|||||+| ..|||+|||+||||+|++++
T Consensus 315 ~~~~~~~~~~~~g~l~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~a~Kkip~~~~~~~~png~K~E~FiFDvf~~~~ 394 (482)
T PTZ00339 315 NERILNNDELLTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHAARKKIPYINGPTDKTMGIKLEAFIFDIFRYAK 394 (482)
T ss_pred ChhhhhcccccCCeecccccceEEEEEEHHHHHHHhhhhhhhcCCceeeccccCeeCCCCCCcceeeehhhhhhHHHhcc
Confidence 9998887665569999999999999999999999875 3445799999999999999 45799999999999999999
Q ss_pred ceeEEEEecCccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCceeccCCCCccCeEEecccCcccccchhhhhCCc
Q 010950 408 STALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGR 487 (497)
Q Consensus 408 ~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~~~~~~l~~~G~~~~~~~~~~~~~ieispl~sy~Ge~l~~~~~~~ 487 (497)
++.++||+|++|||||||++|.+.|||+|||++|+++|+|||+++|+.+..........|||||++||+||||+.+ +|+
T Consensus 395 ~~~~~ev~R~~eFsPlKNa~g~~~d~p~tar~~l~~~~~~wl~~ag~~~~~~~~~~~~~~Eisp~~sy~ge~l~~~-~~~ 473 (482)
T PTZ00339 395 NVLILEVDREDEFAPIKNADGAAADTILNAQKLLLSLHTRWLEAALETVAGNPREGLNLCEISPLVSYGGEGLFQY-PGK 473 (482)
T ss_pred ccceeeechhhccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCeeeccccCCCceEEecCcceeCCCCcccc-cCc
Confidence 9999999999999999999999999999999999999999999999976422111124699999999999999977 899
Q ss_pred eecCCcc
Q 010950 488 TFHAPCE 494 (497)
Q Consensus 488 ~~~~p~~ 494 (497)
+|...-+
T Consensus 474 ~~~~~~~ 480 (482)
T PTZ00339 474 KILGLPE 480 (482)
T ss_pred eecCCCC
Confidence 9885543
No 3
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.2e-106 Score=832.23 Aligned_cols=461 Identities=52% Similarity=0.859 Sum_probs=429.2
Q ss_pred CHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCcccCCCCCccccccCChHH
Q 010950 24 PPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQGLPVAAIEPVPERSVSTVEERTMDE 103 (497)
Q Consensus 24 ~~~~l~~~l~~~gQ~Hll~~~~~l~~~ek~~l~~ql~~iD~~~~~~~~~~~l~~~~~~~~~~~p~p~~~~~~~~~~~~~~ 103 (497)
++..+..+|.++||+|||++|++|++++|..|++|++.+|.+++..+++........+...+.|+|+..+..+.....++
T Consensus 2 ~~~~~~~~l~~~Gq~~l~~~w~eL~~~~~~~l~~~ie~l~l~~~~~~~~~~a~~~~~~~~~~~p~p~~~~~~~~~~~~~d 81 (477)
T KOG2388|consen 2 DRTKLHLILLEAGQSHLFTQWPELSEADKESLLDQIEVLNLSRIHGLQRISANEDSKPVGEIRPVPESKSWPLKERGLDD 81 (477)
T ss_pred chhHHHHHHHHcChHhHhhhchhcCHHHHHHHHHHHHhhcccccchhhhcChhhccCcccccCCCCccccceecccCchh
Confidence 45678899999999999999999999999999999999999999988873333333455778898887777777777778
Q ss_pred HHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCccee
Q 010950 104 RERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIH 183 (497)
Q Consensus 104 ~~~~~~~G~~~i~~gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ip 183 (497)
.++|+..|+++|++|++|+++||||||||||+++|||+||+|+++|+|+||+++|+|+++|.+|..... +++.||
T Consensus 82 ~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~-----~~~~I~ 156 (477)
T KOG2388|consen 82 VDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVS-----DGVDIP 156 (477)
T ss_pred hhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhc-----cCCceE
Confidence 888999999999999999999999999999999999999999999999999999999999999887765 568999
Q ss_pred EEEecCCCchHHHHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHH
Q 010950 184 WYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT 263 (497)
Q Consensus 184 l~IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~ 263 (497)
||||||+.|++.|++||+.|+|||+.++||+||+|+++||++.+|+++|+.+++++++|+||||+|.++.++ |++|.+
T Consensus 157 w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~ 234 (477)
T KOG2388|consen 157 WYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAA 234 (477)
T ss_pred EEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhh--hhHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred cCceEEEEEeCCcccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccC
Q 010950 264 RGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQET 343 (497)
Q Consensus 264 ~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~ 343 (497)
+|++|+|||||||+|++++||+||||++.+++++++|+|+|..|.|.||++|.... |.++||||+|++.+++....+++
T Consensus 235 rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~-G~~~vvEYsEi~~~~a~~~~~d~ 313 (477)
T KOG2388|consen 235 RGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQ-GTPLVVEYSELDAELAKAKAPDG 313 (477)
T ss_pred hcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEecCC-CceeEEEecccCHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999732 89999999999999998777656
Q ss_pred CcccccccceeeEEEehHHHHHHhhccccCccceeeecccCccCC--------CcccchhhhhHhhcCcCCCceeEEEEe
Q 010950 344 GRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHG--------QTVGFKLEQFIFDAFPYAPSTALFEVL 415 (497)
Q Consensus 344 g~~~f~~gNi~~~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~--------~~~~~klE~fifD~~~~~~~~~~~~V~ 415 (497)
|++.|++||||||+|+++||+++.......+|||+|.|||||++. .|||+|+|+||||+|++++++.+++|+
T Consensus 314 g~l~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H~a~kKip~~~~~g~~~kP~kpnGik~E~fifdvf~~~k~f~~meV~ 393 (477)
T KOG2388|consen 314 GRLLFNAGNICNHFFTLDFLKKVTRASVPLLPYHKAEKKIPYVDSTGKLVKPTKPNGIKLEQFIFDVFPSAKKFGLMEVP 393 (477)
T ss_pred CccccCCccHHHHHHhhHHHHHhhhcccccchhhhhhccccccccCCcccCCCCCCceeEEeeeeeecccccceeEEecc
Confidence 999999999999999999999999887778999999999999984 379999999999999999999999999
Q ss_pred cCccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCceeccCCCCccCeEEecccCcccccchhhhhCCceecCCccc
Q 010950 416 REEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEI 495 (497)
Q Consensus 416 R~~eFsPvKn~~g~~~dsp~ta~~~l~~~~~~~l~~~G~~~~~~~~~~~~~ieispl~sy~Ge~l~~~~~~~~~~~p~~i 495 (497)
|++||||+||+.++..|||+|||.+++++|++|+..+|+++.+. +..|||||++||+||+||++..|+.|+.|.++
T Consensus 394 Re~efSPlKng~~~~~D~p~T~~~~~l~~h~~wi~~~g~~f~~~----~~~~evs~~vsy~GE~lEs~~~g~~F~s~~~~ 469 (477)
T KOG2388|consen 394 REEEFSPLKNGGKSSTDNPSTARIALLRLHIRWIEKAGGIFSDA----EAVVEVSPLVSYAGENLESVPSGFEFNSPLYL 469 (477)
T ss_pred hhhhcCccccCCCCCCCChhHHHHHHHHhhhhehhccCcEEecC----cceEEecceeeecccchhhccccceecCceeE
Confidence 99999999999999999999999999999999999999988643 25799999999999999999889999999986
Q ss_pred c
Q 010950 496 G 496 (497)
Q Consensus 496 ~ 496 (497)
.
T Consensus 470 ~ 470 (477)
T KOG2388|consen 470 D 470 (477)
T ss_pred e
Confidence 3
No 4
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=3e-87 Score=726.25 Aligned_cols=425 Identities=28% Similarity=0.386 Sum_probs=364.4
Q ss_pred CCCCCCHHHHHHHHHHCCCchhccccccC--CHHHHHHHHHHHhcCChHH---HHHH---HHHHHhcC---CCCCCCccc
Q 010950 19 IAQSPPPQALLERLKDYGQEDAFALWDEL--SPDERDHLVKDIESLDLPR---VDRI---IRCSLRSQ---GLPVAAIEP 87 (497)
Q Consensus 19 ~~~~~~~~~l~~~l~~~gQ~Hll~~~~~l--~~~ek~~l~~ql~~iD~~~---~~~~---~~~~l~~~---~~~~~~~~p 87 (497)
-+-+++.++|+++|.++||+|||+||+++ +++||++|++||..+|..+ +..+ +.+++..+ ..+++.++|
T Consensus 21 ~~~~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~~~l~~s~~~~~~~~~i~P 100 (615)
T PLN02830 21 ALLSPDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNAKELLADSKEGVNPFEGWTP 100 (615)
T ss_pred ccCChhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccCCCchhhccc
Confidence 45577889999999999999999999998 8999999999999999984 2222 23333322 357888999
Q ss_pred -CCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHH
Q 010950 88 -VPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRL 166 (497)
Q Consensus 88 -~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l 166 (497)
+|++.+.++.+ .+..+|++.|+++| ||||||+||||||||||+++|||++|+++++|+||||++++||+++|++
T Consensus 101 ~vp~~~~~~~~~---~~~~~~~~~Gl~~l--~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~l 175 (615)
T PLN02830 101 SVPEGEVLEYGS---EEFVELEEAGLREA--GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQER 175 (615)
T ss_pred CCCccccccccc---hhhhHHHHHHHHHh--CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHH
Confidence 68777666654 34567999999999 6999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCCcceeEEEecCCCchHHHHHHHhhcCCCCCCCCcEEEEEcCCcceeec-CCceeecC--CCccccccC
Q 010950 167 AAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK-DGRFIMET--PYKVAKAPD 243 (497)
Q Consensus 167 ~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~-~g~~~l~~--~~~~~~~P~ 243 (497)
|.+..+ .+++.||||||||+.||++|++||++|+|||+++++|+||+|+++||++. +|++++++ +++++|+|+
T Consensus 176 a~~~~~----~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~ 251 (615)
T PLN02830 176 AKKRKA----KKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPH 251 (615)
T ss_pred HHHhcc----cCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCC
Confidence 977653 26789999999999999999999999999999999999999999999985 59999988 889999999
Q ss_pred CCchhhHhhhhccHHHHHHHcCceEEEEEeCCcccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEe-cCCCC
Q 010950 244 GNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR-GKGGP 322 (497)
Q Consensus 244 GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~-~~~g~ 322 (497)
||||+|.+|+++|+|++|.++|++|++|+||||+|++.+||.|||||+.++++|+++|++| .|.|++|+||+. +.||+
T Consensus 252 GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K-~~~E~vGvi~~~~~~dG~ 330 (615)
T PLN02830 252 GHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPR-KAKEAIGAIAKLTHKDGR 330 (615)
T ss_pred CccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEEC-CCCcccceEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 789999999984 23566
Q ss_pred --eEEEEeccCChhhhhhccc------cCCcccccccceeeEEEehHHHHHHhhccccCccceeeecccCccCCC----c
Q 010950 323 --LTVVEYSELDPSLASAINQ------ETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQ----T 390 (497)
Q Consensus 323 --~~vvEYsel~~~~~~~~~~------~~g~~~f~~gNi~~~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~~----~ 390 (497)
+++|||+|++++++...++ .+|...| +|||||+|++|+.++++++.....+|..++.|. .|+. .
T Consensus 331 ~l~~vVEYse~~~ll~~a~~p~g~l~~~~~~s~F-PgNtN~L~v~L~a~~~~l~~~~~~lp~ivNpK~---~d~~~~v~q 406 (615)
T PLN02830 331 EMVINVEYNQLDPLLRATGHPDGDVNDETGYSPF-PGNINQLILKLGPYVKELAKTGGVIEEFVNPKY---KDATKTAFK 406 (615)
T ss_pred eeeEEEeecccCHHHHhccCCCcccccccccccC-CCCceeeEeeHHHHHHHHHhCCCccceeccCcc---cCCCCceee
Confidence 5889999999987765432 2344444 899999999999999999765556887666663 3533 4
Q ss_pred ccchhhhhHhhcCcCCC--ceeEEEE-ecCccccccccC-C--------CCCCCCHHHHHHHHHHHHHHHHHHcCceec
Q 010950 391 VGFKLEQFIFDAFPYAP--STALFEV-LREEEFAPVKNA-N--------GSNFDTPDSARLLVLRLHTRWVIAAGGFLT 457 (497)
Q Consensus 391 ~~~klE~fifD~~~~~~--~~~~~~V-~R~~eFsPvKn~-~--------g~~~dsp~ta~~~l~~~~~~~l~~~G~~~~ 457 (497)
...++||+|+|+..... .-++|.| +|+.+|+||||+ + |.+.+|+.+|+.|+|+.+..+|..+|+.+.
T Consensus 407 ~~trle~~mq~f~~~~~~~~~vg~~v~~~~~~f~PVKn~~s~a~~k~~~~~~~~~~~s~e~d~y~~~~llL~~s~~~~~ 485 (615)
T PLN02830 407 SPTRLECMMQDYPKTLPPSAKVGFTVFDNWLAYSPVKNSPADGAAKVPEGNPTHSATSGEMAIYGANCLILRKAGADVE 485 (615)
T ss_pred cchHHHHHHHHHhhhcCcccccCceecCchheeccccCChHHhhhhcccCCCccCcchhhHHHHHHHHHHHHhcCCccc
Confidence 57899999999876532 2235566 455799999999 4 667899999999999999999999998664
No 5
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=1.1e-86 Score=679.66 Aligned_cols=314 Identities=55% Similarity=0.913 Sum_probs=299.5
Q ss_pred HHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEE
Q 010950 106 RWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWY 185 (497)
Q Consensus 106 ~~~~~G~~~i~~gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~ 185 (497)
+|++.|+++|++|++|+|+||||+|||||+++||+|+||+++++||+||+++++|++++.++.+..+ ..+.|||+
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~-----~~~~ip~~ 76 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASG-----KKVPIPWY 76 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccC-----CCCCceEE
Confidence 5889999999999999999999999999999999999999999999999999999999998875543 46789999
Q ss_pred EecCCCchHHHHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcC
Q 010950 186 IMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG 265 (497)
Q Consensus 186 IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G 265 (497)
||||++||+.|++||++++|||+++++|++|.|+++||++.+|+++++++++++|+|+||||+|.+|.++|+|++|+++|
T Consensus 77 imtS~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G 156 (323)
T cd04193 77 IMTSEATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRG 156 (323)
T ss_pred EEcChhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCcccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCc
Q 010950 266 IKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGR 345 (497)
Q Consensus 266 ~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~ 345 (497)
+||++|+||||+|++++||.||||++.+++++++||++|+.|+|+||++|+. +|+++|+||+|+|++.++.++ ++|+
T Consensus 157 ~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~--~g~~~vvEysel~~~~~~~~~-~~g~ 233 (323)
T cd04193 157 IKYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV--DGKPQVVEYSEISDELAEKRD-ADGE 233 (323)
T ss_pred CEEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEE--CCeEEEEEeecCCHHHHhccC-cCCc
Confidence 9999999999999999999999999999999999999999999999999997 799999999999999988775 6799
Q ss_pred ccccccceeeEEEehHHHHHHhhccccCccceeeecccCccC--------CCcccchhhhhHhhcCcCCCceeEEEEecC
Q 010950 346 LRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIH--------GQTVGFKLEQFIFDAFPYAPSTALFEVLRE 417 (497)
Q Consensus 346 ~~f~~gNi~~~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~--------~~~~~~klE~fifD~~~~~~~~~~~~V~R~ 417 (497)
+.|++||||+|+|+++||+++++.....||||+|+||+||+| ..+|++|||+||||+|++++++.+++|+|+
T Consensus 234 l~f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h~a~Kki~~~d~~~~~~~p~~~n~~klE~fifd~~~~~~~~~~~eV~R~ 313 (323)
T cd04193 234 LQYNAGNIANHFFSLDFLEKAAEMEEPSLPYHIAKKKIPYVDLEGGLVKPDEPNGIKLELFIFDVFPFAKNFVCLEVDRE 313 (323)
T ss_pred EecccchHhhheeCHHHHHHHHhhccccCCceEeccccCcccCcCcEeccCCCcEEEeHHHHHHHHHhCCceEEEEEChh
Confidence 999999999999999999999876544699999999999988 568999999999999999999999999999
Q ss_pred ccccccccCC
Q 010950 418 EEFAPVKNAN 427 (497)
Q Consensus 418 ~eFsPvKn~~ 427 (497)
+||+||||++
T Consensus 314 ~~F~PvKn~~ 323 (323)
T cd04193 314 EEFSPLKNAD 323 (323)
T ss_pred hccccCcCCC
Confidence 9999999974
No 6
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=3e-81 Score=630.34 Aligned_cols=285 Identities=22% Similarity=0.303 Sum_probs=266.5
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
+|||||+||||||||||+++||||+|| ++|+||||++++||+++++. +++.|||+||||+.||++|+
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~~~-----------~~~~iPl~iMtS~~T~~~T~ 68 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLNKT-----------YGVDVPLVLMNSFNTDEDTK 68 (300)
T ss_pred CcEEEEEecCCcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCCcchHHHH
Confidence 599999999999999999999999887 79999999999999998875 57899999999999999999
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeec---CCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeC
Q 010950 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIME---TPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (497)
Q Consensus 198 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~---~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~v 274 (497)
+||++|++ ++++|++|+|+++||++.+|+++++ ++.+++|+|+||||+|.+|++||+|++|+++|+||++|+||
T Consensus 69 ~~l~~~~~---~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nv 145 (300)
T cd00897 69 KILKKYAG---VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNI 145 (300)
T ss_pred HHHHHcCC---CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEec
Confidence 99999775 6789999999999999999999987 68899999999999999999999999999999999999999
Q ss_pred CcccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCccccccccee
Q 010950 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (497)
Q Consensus 275 DN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~ 354 (497)
|| |++++||.|||||+.+++++++||++|+.|+|+||++|++ +|+++|+||+|+|++++++++ +...|.++|||
T Consensus 146 DN-L~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~--~g~~~vvEyse~p~e~~~~~~---~~~~~~~~nt~ 219 (300)
T cd00897 146 DN-LGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFK---SIKKFKIFNTN 219 (300)
T ss_pred cc-ccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEE--CCEEEEEEeccCCHHHHHhhc---CcccceEEEEe
Confidence 99 6999999999999999999999999999999999999997 799999999999999887654 45567788999
Q ss_pred eEEEehHHHHHHhhccccCccceeeecccCccCCCcccchhhhhHhhcCcCCCceeEEEEecCccccccccCCC
Q 010950 355 LHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG 428 (497)
Q Consensus 355 ~~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g 428 (497)
||||+++||+++++....+||+|+|+|+|+. .+|++|||+||||+|++++++.+++|+|+ ||+||||+++
T Consensus 220 n~~~~l~~L~~~~~~~~~~lp~h~~~K~v~p---~~~~~qlE~~i~da~~~~~~~~~~eV~R~-rF~PvKn~~d 289 (300)
T cd00897 220 NLWVNLKAVKRVVEENALDLEIIVNPKTVDG---GLNVIQLETAVGAAIKNFDNALGVNVPRS-RFLPVKTTSD 289 (300)
T ss_pred EEEEEHHHHHHHHHhccCCCCeeecccccCC---CCCEEEeHhHhhhHHHhCCCcEEEEEChh-hcCCCCChHH
Confidence 9999999999998765557999999999963 28999999999999999999999999998 7999999876
No 7
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=6.8e-81 Score=656.70 Aligned_cols=379 Identities=19% Similarity=0.227 Sum_probs=326.0
Q ss_pred HHHHHHHHHHHhcCC--CCCCCcccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccc
Q 010950 65 PRVDRIIRCSLRSQG--LPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCV 142 (497)
Q Consensus 65 ~~~~~~~~~~l~~~~--~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLG~~~PKg~~ 142 (497)
+.|.++|++++..+. .+|+.|+|++++.+..+++....... .....++| +|+|||+||||||||||+++|||++
T Consensus 27 ~~f~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~L--~k~avlkLnGGlGTrmG~~~PKs~i 102 (469)
T PLN02474 27 SGFISLVSRYLSGEAQHIEWSKIQTPTDEVVVPYDKLAPVPED--PEETKKLL--DKLVVLKLNGGLGTTMGCTGPKSVI 102 (469)
T ss_pred HHHHHHHHHHHhCCCCeecHHHccCCchhhCcChhhccccccc--hhHHHHHH--hcEEEEEecCCcccccCCCCCceeE
Confidence 346667777776543 67889999887776666655321100 11234577 5999999999999999999999997
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHHhhcCCCCCCCCcEEEEEcCCcc
Q 010950 143 NIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIP 222 (497)
Q Consensus 143 ~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P 222 (497)
+ +++|+||||++++||+++++. +++.|||+||||+.||++|++||++|++|+ .+|++|+|+++|
T Consensus 103 ~--v~~~~sfldl~~~qi~~l~~~-----------~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~---~~i~~F~Q~~~P 166 (469)
T PLN02474 103 E--VRNGLTFLDLIVIQIENLNKK-----------YGCNVPLLLMNSFNTHDDTQKIVEKYTNSN---IEIHTFNQSQYP 166 (469)
T ss_pred E--cCCCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCCchhHHHHHHHHHcCCCc---cceEEEecCcee
Confidence 7 589999999999999998765 678999999999999999999999999884 579999999999
Q ss_pred eeecCCceeecCCC---ccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcccccccCHHHHHHHhhcCCcEEE
Q 010950 223 CVSKDGRFIMETPY---KVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGA 299 (497)
Q Consensus 223 ~~~~~g~~~l~~~~---~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~ 299 (497)
|++.+|+++++.+. ..+|+|+||||+|.+|++||+|++|+++|+||++|+|+|| |++++||.|+|||+.+++++++
T Consensus 167 ~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp~~lg~~~~~~~e~~~ 245 (469)
T PLN02474 167 RVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKILNHLIQNKNEYCM 245 (469)
T ss_pred eEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCHHHHHHHHhcCCceEE
Confidence 99999999998765 5569999999999999999999999999999999999999 5999999999999999999999
Q ss_pred EEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEEehHHHHHHhhccccCccceee
Q 010950 300 KVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLA 379 (497)
Q Consensus 300 kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f~l~fL~~~~~~~~~~lp~h~a 379 (497)
||++|+.|++|||++|++ +|+++|+||+|+|++++++++ |.++|+++|||||||+++||+++++. ..+|+|+.
T Consensus 246 ev~~Kt~~d~kgG~l~~~--dgk~~lvEysqvp~e~~~~f~---~~~kf~~fNtnn~w~~L~~l~~~~~~--~~l~~~~I 318 (469)
T PLN02474 246 EVTPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFK---SIEKFKIFNTNNLWVNLKAIKRLVEA--DALKMEII 318 (469)
T ss_pred EEeecCCCCCCccEEEEE--CCEEEEEEEecCCHHHHHhhc---ccccceeeeeeeEEEEHHHHHHHhhc--CCCCceee
Confidence 999999999999999987 799999999999999987654 67788889999999999999999863 45888865
Q ss_pred ecccCccCCCcccchhhhhHhhcCcCCCceeEEEEecCccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCceeccC
Q 010950 380 EKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHS 459 (497)
Q Consensus 380 ~Kki~~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~~~~~~l~~~G~~~~~~ 459 (497)
.+ -..++ ..+-+|||+||||+|++++++.+++|+|+ ||+||||++ +|.++|.|+|.++++|+..+|+.....
T Consensus 319 ~n-~k~~~-g~kv~q~Et~ig~ai~~f~~~~~v~VpR~-rF~PVK~~~-----dll~~rsdly~l~~~~l~~~~~~~~~~ 390 (469)
T PLN02474 319 PN-PKEVD-GVKVLQLETAAGAAIRFFDNAIGINVPRS-RFLPVKATS-----DLLLVQSDLYTLVDGFVIRNKARTNPS 390 (469)
T ss_pred cC-CCCCC-CeeEEEeHHHHHHHHHhCCCceEEEEchh-hccCCCCCC-----CHHHHHHHHHHhccCeEEecCcccCCC
Confidence 22 22333 34568899999999999999999999998 699999987 499999999999999999999854322
Q ss_pred CCCccCeEEecccCcccccchhhh
Q 010950 460 VPLYATGVEVSPLCSYAGENLEAI 483 (497)
Q Consensus 460 ~~~~~~~ieispl~sy~Ge~l~~~ 483 (497)
.| .||++|.+++.++.++.+
T Consensus 391 ~p----~IeL~~~f~~v~~f~~rf 410 (469)
T PLN02474 391 NP----SIELGPEFKKVANFLSRF 410 (469)
T ss_pred CC----cEEECcccccHHhHHHhc
Confidence 22 489999999999999876
No 8
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=6.1e-81 Score=630.08 Aligned_cols=295 Identities=27% Similarity=0.344 Sum_probs=266.7
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHH
Q 010950 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (497)
Q Consensus 120 vavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~ 199 (497)
+|+|+||||||||||+++|||++||++++++||||++++||+++++++.+ .+++.||||||||+.||++|++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~-------~~~~~IPl~IMTS~~Th~~T~~~ 73 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKK-------GEKMEIPFVIMTSDDTHSKTLKL 73 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhc-------cCCCceeEEEECCCchhHHHHHH
Confidence 58999999999999999999999999999999999999999999998864 16789999999999999999999
Q ss_pred HhhcCCCCCCCCcEEEEEcCCcceee-cCCce--eecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCc
Q 010950 200 FEGHKYFGLESDQVTFFQQGTIPCVS-KDGRF--IMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (497)
Q Consensus 200 ~~~~~~FGl~~~~v~~f~Q~~~P~~~-~~g~~--~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN 276 (497)
|++|+|||+++++|+||+|+++||++ .+|++ .++++++++|+|+||||+|.+|+++|+||+|.++|+||++|+||||
T Consensus 74 fe~n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN 153 (315)
T cd06424 74 LEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTN 153 (315)
T ss_pred HHHCCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecch
Confidence 99999999999999999999999997 89998 5788999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEec-CCCCeEE--EEeccCChhhhhhccc------cCCccc
Q 010950 277 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG-KGGPLTV--VEYSELDPSLASAINQ------ETGRLR 347 (497)
Q Consensus 277 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~-~~g~~~v--vEYsel~~~~~~~~~~------~~g~~~ 347 (497)
+|++++||.|||+++.++++|+++||+ +.|.|+||++|+.. .||+++| |||+|+++++++..+. .+|.+.
T Consensus 154 ~L~~~adP~fiG~~~~~~~d~~~k~v~-~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~ 232 (315)
T cd06424 154 ALAFKAIPAVLGVSATKSLDMNSLTVP-RKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSP 232 (315)
T ss_pred hhhhccChhhEEEEecCCCceEeEEEe-CCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccccccccc
Confidence 999999999999999999999999998 58999999999842 4689988 9999999998775321 234556
Q ss_pred ccccceeeEEEehHHHHHHhhccccCccceeeecccCccCCC----cccchhhhhHhhc---CcCCCceeEEEEecCccc
Q 010950 348 FCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQ----TVGFKLEQFIFDA---FPYAPSTALFEVLREEEF 420 (497)
Q Consensus 348 f~~gNi~~~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~~----~~~~klE~fifD~---~~~~~~~~~~~V~R~~eF 420 (497)
| +||||+|+|++++|.+.++. .+++|...+++||.|++ ..++|||+||||+ |+.+.++.+++|+|++||
T Consensus 233 f-~gNi~~~~f~l~~~~~~l~~---~~~~~~~~~n~ky~d~~~~~~~~p~rlE~~m~D~~~~f~~~~~~~~~~~~r~~~f 308 (315)
T cd06424 233 F-PGNINQLVFSLGPYMDELEK---TKGAIPEFINPKYKDATKTAFKSPTRLECMMQDIPLLFEEDYRVGFTVLDRWLCF 308 (315)
T ss_pred C-CCeeeeEEEeHHHHHHHHhh---ccccCeeeecCCcccCCCCeecCchHHHHHHHHHHHhhcccceeEEEEEchhhcc
Confidence 6 99999999999999999874 34555556688898854 4568999999999 544889999999999999
Q ss_pred cccccC
Q 010950 421 APVKNA 426 (497)
Q Consensus 421 sPvKn~ 426 (497)
|||||+
T Consensus 309 sP~KN~ 314 (315)
T cd06424 309 SPVKNN 314 (315)
T ss_pred cccCCC
Confidence 999995
No 9
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=2.2e-81 Score=658.47 Aligned_cols=362 Identities=38% Similarity=0.560 Sum_probs=298.5
Q ss_pred hHHHHHHHHHHHhc-C--CCCCCCcccCCCCCccccccCChHHHHH--HHHHhhhhhcCCCEEEEEecCCCccccCCCCC
Q 010950 64 LPRVDRIIRCSLRS-Q--GLPVAAIEPVPERSVSTVEERTMDERER--WWKMGLKAISDGKLAVLLLSGGQGTRLGSSDP 138 (497)
Q Consensus 64 ~~~~~~~~~~~l~~-~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~--~~~~G~~~i~~gkvavvlLAGG~GTRLG~~~P 138 (497)
.+.+.++|++++.+ . ..+|+.+.|++++.+..+++ +.. | +.|..+++.||+|||+||||||||||+++|
T Consensus 2 ~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~~~~~~~~~-----l~~~~~-~~~~~~~~~~kvavl~LaGGlGTrlG~~~p 75 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKSHQIDWDKIMPPPPEEVVDYES-----LKEYEW-DEGLEAIALGKVAVLKLAGGLGTRLGCSGP 75 (420)
T ss_dssp HHHHHHHHHHHHHCCCCCS--GGGEEE-GTGCEEEHHH-----HHHSCH-HHHHHHHHTTCEEEEEEEESBSGCCTESSB
T ss_pred hHHHHHHHHHHHHhcccCCcccccCCCCChhhcCChhH-----hccccc-ccchhHHhhCCEEEEEEcCcccCccCCCCC
Confidence 34677889999876 2 25678888876666655543 333 4 689999999999999999999999999999
Q ss_pred CccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHHhhcCCCCCCCCcEEEEEc
Q 010950 139 KGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQ 218 (497)
Q Consensus 139 Kg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q 218 (497)
||++|| .+++||||++++||++++.. +++.|||+||||+.||++|++||++ |||++.+ |++|+|
T Consensus 76 K~~~~v--~~~~t~ldl~~~qi~~l~~~-----------~~~~iPl~iMtS~~T~~~T~~~l~k--yfg~~~~-v~~F~Q 139 (420)
T PF01704_consen 76 KGLIPV--REGKTFLDLIVEQIEALNKK-----------YGVDIPLYIMTSFNTHEDTRKFLEK--YFGLDVD-VFFFKQ 139 (420)
T ss_dssp GGGSEE--ETTEEHHHHHHHHHHHHHHH-----------HTTT-EEEEEEETTTHHHHHHHHHH--GCGSSCC-EEEEEE
T ss_pred Ccceec--CCcccHHHHHHHHHHHHhcc-----------ccccceEEEecCcccHHHHHHHHHH--hcCCCcc-eEEEee
Confidence 999887 88999999999999988765 4678999999999999999999999 9999876 999999
Q ss_pred CCcceeecCCceeecCCC-----ccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcccccccCHHHHHHHhhc
Q 010950 219 GTIPCVSKDGRFIMETPY-----KVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDK 293 (497)
Q Consensus 219 ~~~P~~~~~g~~~l~~~~-----~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~ 293 (497)
+++||++.+|+++++.+. ...|+|+||||+|.+|.+||+|++|+++|++|+||+|||| |++++||.||||++.+
T Consensus 140 ~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~ 218 (420)
T PF01704_consen 140 SKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDPVFLGYMIEK 218 (420)
T ss_dssp -EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-HHHHHHHHHT
T ss_pred cCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCHHHHHHHHhc
Confidence 999999999999998765 2468999999999999999999999999999999999999 8999999999999999
Q ss_pred CCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEEehHHHHHHhhccccC
Q 010950 294 GVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKD 373 (497)
Q Consensus 294 ~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f~l~fL~~~~~~~~~~ 373 (497)
+++|++||++|+.|+|+||++|+. +|+++|+||+|+|++..+++...++...| |+||+||+++||+++++.....
T Consensus 219 ~~~~~~evv~Kt~~dek~Gvl~~~--~G~~~vvEysqip~~~~~~~~~~~~~~~F---ntnNi~~~l~~l~~~~~~~~~~ 293 (420)
T PF01704_consen 219 NADFGMEVVPKTSPDEKGGVLCRY--DGKLQVVEYSQIPKEHMAEFKDIKGFLLF---NTNNIWFSLDFLKRLLERDELQ 293 (420)
T ss_dssp T-SEEEEEEE-CSTTTSSEEEEEE--TTEEEEEEGGGS-HHGHHHHTSTTTSBEE---EEEEEEEEHHHHHHHHHTTTCC
T ss_pred cchhheeeeecCCCCCceeEEEEe--CCccEEEEeccCCHHHHHhhhccccceEE---EeceeeEEHHHHHHHHHhcccc
Confidence 999999999999999999999997 79999999999999976665544555555 8888999999999999876678
Q ss_pred ccceeeecccCccCCCcccchhhhhHhhcCcCCCceeEEEEecCccccccccCCC--------CCCCCHHHHHHHHHHHH
Q 010950 374 SVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANG--------SNFDTPDSARLLVLRLH 445 (497)
Q Consensus 374 lp~h~a~Kki~~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g--------~~~dsp~ta~~~l~~~~ 445 (497)
||||+|+|||||.|+.++.+|||++|+|.+..+++..+++|+| +||+||||+++ -..+++.+++......+
T Consensus 294 Lp~h~a~Kki~~~d~~~~~~q~Et~i~~~i~~f~~~~~v~V~R-~rF~PvKn~~dLl~~~Sd~y~~~~~~~~~~~~~~~~ 372 (420)
T PF01704_consen 294 LPIHVAKKKIPYVDNGIKVIQFETAIGFAIFQFDNSFAVEVPR-DRFAPVKNTSDLLLVRSDLYDLDDGTLVRNPLRAFH 372 (420)
T ss_dssp S-EEEEEEESSEECTEEEEEEEECGGGGGGGGCTSEEEEEE-G-GG--B-SSHHHHHHHHSTTEEEETTEEEEHCCHCSS
T ss_pred CccEEcchhcccccCCccEEeehhhhhchHhhccCcEEEEEcH-HHcCCccccCcceeeccceeccccceeeecccccCC
Confidence 9999999999999999999999999999988888899999999 79999999866 12345666666666666
Q ss_pred HHHHHHcCc
Q 010950 446 TRWVIAAGG 454 (497)
Q Consensus 446 ~~~l~~~G~ 454 (497)
.+|+.++|.
T Consensus 373 ~~p~i~lg~ 381 (420)
T PF01704_consen 373 TRPLIKLGD 381 (420)
T ss_dssp CHHEEEECG
T ss_pred CCCeeccCc
Confidence 666665554
No 10
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-77 Score=619.93 Aligned_cols=438 Identities=32% Similarity=0.454 Sum_probs=376.8
Q ss_pred CCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCCCcccCCCCCcccccc
Q 010950 23 PPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQ----GLPVAAIEPVPERSVSTVEE 98 (497)
Q Consensus 23 ~~~~~l~~~l~~~gQ~Hll~~~~~l~~~ek~~l~~ql~~iD~~~~~~~~~~~l~~~----~~~~~~~~p~p~~~~~~~~~ 98 (497)
.........+.+..|.|++..|..+++.+..+...++..+| .+..+|++++... ...|+.++|+-++.+..+++
T Consensus 13 ~~f~~~~~~l~~~~~~h~l~~l~~~s~~~~~~~~~~~~~~d--~~f~l~~~~ll~~s~~s~~~~~ki~~~~~d~~~~~~~ 90 (472)
T COG4284 13 FKFNSDAVSLAASQQEHLLDKLKQSSEKQALKSFEKLLLLD--IFFFLFSRYLLNTSKASTQEWDKIRPPNPDDVVDYEK 90 (472)
T ss_pred hhhhcchhhhhHHHHHHHHHHhhhhchHHHHhhhhhhhhhH--HHHHHHHHHHhhcCcccceeecccCCCChhhhccchh
Confidence 34567788899999999999999999955555555654444 4455666665432 24566777765555555544
Q ss_pred CChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010950 99 RTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSG 178 (497)
Q Consensus 99 ~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~ 178 (497)
... + ..|+..+..||+|||+||||||||||+++|||+|+|+ .|+||||+++++|+.++++ +
T Consensus 91 ~~~----~--~~~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~--~gks~~dl~~~qIk~ln~~-----------~ 151 (472)
T COG4284 91 KIL----E--GWGLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQIKYLNRQ-----------Y 151 (472)
T ss_pred hcc----c--hhhhhhhhcCceEEEEecCCcccccccCCCceeEEec--CCCcHHHHHHHHHHHHHHH-----------h
Confidence 321 1 2288888889999999999999999999999999986 8999999999999999887 6
Q ss_pred CcceeEEEecCCCchHHHHHHHhhcCCCCCCCCcEEEEEcCCcc-eeecCCceeecCCCc-cccccCCCchhhHhhhhcc
Q 010950 179 SAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIP-CVSKDGRFIMETPYK-VAKAPDGNGGVYSALKSSK 256 (497)
Q Consensus 179 ~~~ipl~IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P-~~~~~g~~~l~~~~~-~~~~P~GhGgi~~aL~~sg 256 (497)
+++|||||||| .|++.|..||+.++|||+++.+|+||.|+.+| |++.+|+.+..+.+. ++|+|+||||+|.+|+.||
T Consensus 152 ~~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG 230 (472)
T COG4284 152 NVDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSG 230 (472)
T ss_pred CCCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcc
Confidence 78999999999 99999999999999999999999999999999 677889888766555 9999999999999999999
Q ss_pred HHHHHHHcCceEEEEEeCCcccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhh
Q 010950 257 LLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLA 336 (497)
Q Consensus 257 ~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~ 336 (497)
++++|.++|++|++|+|||| |++++||.|+|+++.+++++++|++.|+.|+|+||+++.. +|+++|+||+|+|.+++
T Consensus 231 ~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~--~g~~rllEysev~~~~~ 307 (472)
T COG4284 231 ILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTY--DGKLRLLEYSEVPNEHR 307 (472)
T ss_pred hHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEe--CCceEEEEEecCChhHh
Confidence 99999999999999999999 8999999999999999999999999999999999999987 68999999999999998
Q ss_pred hhccccCCcccccccc-eeeEEEehHHHHHHhhccccCccceeeecccCccC--C------Ccccchhhh-hH-hhcCcC
Q 010950 337 SAINQETGRLRFCWSN-VCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIH--G------QTVGFKLEQ-FI-FDAFPY 405 (497)
Q Consensus 337 ~~~~~~~g~~~f~~gN-i~~~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~--~------~~~~~klE~-fi-fD~~~~ 405 (497)
+++. +.|.++|+.+| |++|+++++||.+... ..||+|.|+||+|+.+ . .++++|||. || ||+|.+
T Consensus 308 ~~~~-s~~~~~~~n~Nni~l~~~~~~~l~~~~~---l~Lpi~~a~Kki~~~~~~~~~~t~i~~~i~kfe~~FI~fDlF~~ 383 (472)
T COG4284 308 EEFT-SDGKLKYFNTNNIWLHLFSVKFLKEAAY---LNLPIHKAIKKIPQLDNIIQLTTAIGKNISKFENEFIPFDLFLY 383 (472)
T ss_pred hhhc-cccceeeeccccceeehhHHHHHHhhhc---cCCcchhhhcccCccccceeeccccccchhhccccccceeeeEE
Confidence 8776 57889998888 9999999999987654 5799999999999885 1 368999996 99 999999
Q ss_pred C--CceeEEEEecCccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCceeccCCCCccCeEEecccCcccccchhhh
Q 010950 406 A--PSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAI 483 (497)
Q Consensus 406 ~--~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~~~~~~l~~~G~~~~~~~~~~~~~ieispl~sy~Ge~l~~~ 483 (497)
. +++.++.|||..||+|+||-.|...++++|+..++.+.-. |++-.|.++...+ .++.++..+|.||...-.
T Consensus 384 ~s~~~~~~~~vpR~~~f~Plkn~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~is~nv-----~~~~~~~lk~~~e~~~l~ 457 (472)
T COG4284 384 KSDENGGLLLVPRFGEFSPLKNLEGSHFDNVETFTCGIPRIPL-ILELEGLTISGNV-----LFGRNVTLKYASENTSLC 457 (472)
T ss_pred EecCCCceEeccccCCCCchhhccCCCCCcHHhhhcccccccc-hhhhccceecCce-----EeeecceeeecCCCceEe
Confidence 8 8999999999999999999999989999999999887644 9999999886332 368899999999999865
Q ss_pred hCCceecCCccc
Q 010950 484 CRGRTFHAPCEI 495 (497)
Q Consensus 484 ~~~~~~~~p~~i 495 (497)
++++.|--.++|
T Consensus 458 ~~~~s~~e~~ii 469 (472)
T COG4284 458 IPNKSFLENVII 469 (472)
T ss_pred ccCCeeeeeeeE
Confidence 688887665554
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=1.6e-66 Score=519.07 Aligned_cols=261 Identities=34% Similarity=0.479 Sum_probs=243.6
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHH
Q 010950 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (497)
Q Consensus 120 vavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~ 199 (497)
||+|+||||+|||||++.||+|+||++++|||+||+++++|++++.++. +++.|||+||||++||+.|++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~---------~~~~Ip~~imts~~t~~~t~~~ 71 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDL---------YSCKIPEQLMNSKYTHEKTQCY 71 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhh---------cCCCCCEEEEcCchhHHHHHHH
Confidence 6899999999999999999999999999999999999999999988752 3578999999999999999999
Q ss_pred HhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcccc
Q 010950 200 FEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 279 (497)
Q Consensus 200 ~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~ 279 (497)
|++|+ ++.++|++|+|+++||++.+|++.++++.+++|+|+||||+|.+|..+|+|++|+++|++|++|+|+||+|+
T Consensus 72 l~~~~---~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la 148 (266)
T cd04180 72 FEKIN---QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLV 148 (266)
T ss_pred HHHcC---CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCc
Confidence 99988 556899999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhcc-----ccCCccccccccee
Q 010950 280 RVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAIN-----QETGRLRFCWSNVC 354 (497)
Q Consensus 280 ~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~-----~~~g~~~f~~gNi~ 354 (497)
+++||.++||++.++++++++|++|+.++|+||++|..+ +|+++++||+|+++++++... ..+|.+.|+++|||
T Consensus 149 ~v~DP~~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~~-~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 227 (266)
T cd04180 149 KVADPLFIGIAIQNRKAINQKVVPKTRNEESGGYRIANI-NGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTN 227 (266)
T ss_pred cccCHHHHHHHHHcCCCEEEEEEECCCCCCeEEEEEEec-CCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEE
Confidence 999999999999999999999999999999999999872 399999999999999876531 13578899999999
Q ss_pred eEEEehHHHHHHhhccccCccceeeecccCccCCCcccchhhhhHhhcCcCCCceeEEEEecCcccccccc
Q 010950 355 LHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKN 425 (497)
Q Consensus 355 ~~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn 425 (497)
||||+++||+++++ |+|++++++.+++|+|++||+||||
T Consensus 228 ~~~~~l~~l~~~~~--------------------------------d~~~~~~~~~~~~v~r~~~F~PvKn 266 (266)
T cd04180 228 NLINFLVEFKDRVD--------------------------------DIIEFTDDIVGVMVHRAEEFAPVKN 266 (266)
T ss_pred EEEEEHHHHHHHHH--------------------------------HHHhccCceEEEEeCchhccccCCC
Confidence 99999999998873 9999999999999999999999998
No 12
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-59 Score=472.67 Aligned_cols=343 Identities=21% Similarity=0.275 Sum_probs=303.9
Q ss_pred ChHHHHHHHHHHHhcC--CCCCCCcccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCc
Q 010950 63 DLPRVDRIIRCSLRSQ--GLPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKG 140 (497)
Q Consensus 63 D~~~~~~~~~~~l~~~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLG~~~PKg 140 (497)
+++.|..+|++++..+ ..+|+.|+|+|++.+..+++... . ..+.+++. |+||++|+||+||.||+.+||+
T Consensus 53 e~~~F~~Lf~RyL~~~~~~~~wdkI~~p~~d~vv~y~~i~~-----~-~~~~~~L~--KLavlKLNGGlGttmGc~gPKS 124 (498)
T KOG2638|consen 53 ELSGFFNLFSRYLREKAPTIDWDKIRPPPEDAVVPYDDIKN-----V-ELSKSLLN--KLAVLKLNGGLGTTMGCKGPKS 124 (498)
T ss_pred hHHHHHHHHHHHHhccCCccchhhccCCChhhccccccccc-----h-hhHHHhhh--heEEEEecCCcCCccccCCCce
Confidence 3457888999998764 47899999999999888887753 2 45777887 9999999999999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHHhhcCCCCCCCCcEEEEEcCC
Q 010950 141 CVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGT 220 (497)
Q Consensus 141 ~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~ 220 (497)
+ |++..|.||+++.++||..|++. |++++|+++|+|++|+++|.++++++.++ +.+|++|.|+.
T Consensus 125 ~--ieVR~g~tFLDL~V~QIe~LN~~-----------Y~~dVPlvLMNSfnTdedT~kil~ky~~~---kv~i~TF~QS~ 188 (498)
T KOG2638|consen 125 V--IEVRDGLTFLDLTVRQIENLNKT-----------YNVDVPLVLMNSFNTDEDTQKILKKYAGS---KVDIKTFNQSK 188 (498)
T ss_pred e--EEEcCCCchhHHHHHHHHHHHhh-----------cCCCCCEEEecccccchHHHHHHHHhcCC---ceeEEEecccc
Confidence 9 77899999999999999988764 78999999999999999999999996654 46799999999
Q ss_pred cceeecCCceeecC----CCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcccccccCHHHHHHHhhcCCc
Q 010950 221 IPCVSKDGRFIMET----PYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVS 296 (497)
Q Consensus 221 ~P~~~~~g~~~l~~----~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~ 296 (497)
+|.++.|..++... ...-+|+|+|||++|.+|+.||+||+|+++|+||+||+|+||+ ++++|.-+|.+++.++++
T Consensus 189 ~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNL-GAtvDL~ILn~~i~~~~e 267 (498)
T KOG2638|consen 189 YPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNL-GATVDLNILNHVINNNIE 267 (498)
T ss_pred CCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccc-cceeeHHHHHHHhcCCCc
Confidence 99999999888653 2357999999999999999999999999999999999999997 899999999999999999
Q ss_pred EEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEEehHHHHHHhhccccCccc
Q 010950 297 AGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVY 376 (497)
Q Consensus 297 ~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f~l~fL~~~~~~~~~~lp~ 376 (497)
+.|+|+.||.++-|+|+++.+ +|+++++||.|+|+++.+++. +...++ ..||||+|+++++++++++...-.++.
T Consensus 268 y~MEvTdKT~aDvKgGtLi~y--~G~lrlLEiaQVP~ehv~eFk-S~kkFk--ifNTNNlWinLkavKrlve~~~l~meI 342 (498)
T KOG2638|consen 268 YLMEVTDKTRADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFK-SIKKFK--IFNTNNLWINLKAVKKLVEENALNMEI 342 (498)
T ss_pred eEEEecccchhhcccceEEee--cCEEEEEEeccCChhHhhhhc-cceeEE--EeccCCeEEehHHHHHHhhcCccccee
Confidence 999999999999999999998 799999999999999887765 344444 459999999999999999876678899
Q ss_pred eeeecccCccCCCcccchhhhhHhhcCcCCCceeEEEEecCccccccccCCCCCCCCHHHHHHHHHHH
Q 010950 377 HLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRL 444 (497)
Q Consensus 377 h~a~Kki~~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~~~l~~~ 444 (497)
+.++|++.+ ..+.+|||+.+.+++++++++.++.|+|+ ||.|||++++ ....+.+||.+
T Consensus 343 i~N~kti~~---~~~viQleTa~GaaIk~F~na~gv~VpRs-RFlPVKt~sD-----LlLv~S~Ly~l 401 (498)
T KOG2638|consen 343 IVNPKTIDR---GIEVIQLETAAGAAIKFFDNAIGVNVPRS-RFLPVKTCSD-----LLLVMSNLYDL 401 (498)
T ss_pred ecChhhccC---CceEEEEhhhhhHHHHhCCCceeeecccc-cccccccccc-----ceeeecceeec
Confidence 999998743 56789999999999999999999999997 9999999976 44555556654
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=1.6e-15 Score=156.47 Aligned_cols=250 Identities=18% Similarity=0.150 Sum_probs=198.7
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
.+.+|+||.|+||||.++.||.++++ +|||++++.++....+. .-.+-+++ ++-.+..++
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~v---aGkpMl~hVi~~a~~l~--------------~~~i~vVv---Gh~ae~V~~ 61 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPV---AGKPMLEHVIDAARALG--------------PDDIVVVV---GHGAEQVRE 61 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhc---cCccHHHHHHHHHhhcC--------------cceEEEEE---cCCHHHHHH
Confidence 46799999999999999999999999 99999999999876532 12354566 899999999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCce-EEEEEeCCcc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIK-YIDCYGVDNA 277 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~-yi~v~~vDN~ 277 (497)
-+.+.. ++.|+.|.. |.|+|....+... .+..+.+ .+.|.+.|-|
T Consensus 62 ~~~~~~-------~v~~v~Q~e---------------------qlGTgHAV~~a~~------~l~~~~~g~vLVl~GD~P 107 (460)
T COG1207 62 ALAERD-------DVEFVLQEE---------------------QLGTGHAVLQALP------ALADDYDGDVLVLYGDVP 107 (460)
T ss_pred Hhcccc-------CceEEEecc---------------------cCChHHHHHhhhh------hhhcCCCCcEEEEeCCcc
Confidence 998632 578999885 6699988887543 3555666 8999999999
Q ss_pred cccccCHH-HHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCC-eEEEEeccCChhhhhhccccCCcccccccceee
Q 010950 278 LVRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGP-LTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (497)
Q Consensus 278 L~~~~Dp~-~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~-~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~ 355 (497)
|...--.. ++.++...++.++.-...-.+|..++.+++.. +|+ ..|||..+.+++.+.- .--|+++
T Consensus 108 Lit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~--~g~V~~IVE~KDA~~eek~I----------~eiNtGi 175 (460)
T COG1207 108 LITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDG--NGEVTAIVEEKDASEEEKQI----------KEINTGI 175 (460)
T ss_pred cCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcC--CCcEEEEEEcCCCCHHHhcC----------cEEeeeE
Confidence 96443333 77888888899988888888999997666653 454 6889999999876532 1349999
Q ss_pred EEEehHHHHHHhhccccCccceeeecccCccCCCcccchhhhhHhhcCcCCC----ceeEEEEecCccccccccCCCCCC
Q 010950 356 HMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAP----STALFEVLREEEFAPVKNANGSNF 431 (497)
Q Consensus 356 ~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~~~~~~klE~fifD~~~~~~----~~~~~~V~R~~eFsPvKn~~g~~~ 431 (497)
+.|+-++|.+.+..+. .|..|=|+++.|++.++. .+..+.++..+|+..|+|.-
T Consensus 176 y~f~~~~L~~~L~~l~------------------nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~---- 233 (460)
T COG1207 176 YAFDGAALLRALPKLS------------------NNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV---- 233 (460)
T ss_pred EEEcHHHHHHHHHHhc------------------cccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH----
Confidence 9999999999886431 236888999999999964 56788888888999998843
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCceec
Q 010950 432 DTPDSARLLVLRLHTRWVIAAGGFLT 457 (497)
Q Consensus 432 dsp~ta~~~l~~~~~~~l~~~G~~~~ 457 (497)
....+++.|-++.++-++.+|+.+.
T Consensus 234 -qLa~~e~~~q~r~~~~~m~~GVtl~ 258 (460)
T COG1207 234 -QLAEAERIMQRRIAEKLMLAGVTLI 258 (460)
T ss_pred -HHHHHHHHHHHHHHHHHHHcCcEEe
Confidence 4788888999999999999999875
No 14
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.11 E-value=2.1e-08 Score=107.60 Aligned_cols=181 Identities=20% Similarity=0.260 Sum_probs=110.0
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
.+.+|+||||.||||+.+.||.|+|+ .||+++++.++.+.+ .+.. .++|.|+ +..+.+.+
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i---~gkpli~~~l~~l~~---------------~~~~-~iivv~~-~~~~~i~~ 64 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTL---LGEPMLRFVYRALRP---------------LFGD-NVWTVVG-HRADMVRA 64 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceeccc---CCCcHHHHHHHHHHh---------------cCCC-cEEEEEC-CCHHHHHH
Confidence 57899999999999998899999998 899999999997743 1111 2244444 55666766
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++... ++.+..|+. |.|.|+..... ++.|...+.+++++.+.|+++
T Consensus 65 ~~~~~--------~~~~v~~~~---------------------~~Gt~~al~~a-----~~~l~~~~~d~vlv~~gD~P~ 110 (456)
T PRK14356 65 AFPDE--------DARFVLQEQ---------------------QLGTGHALQCA-----WPSLTAAGLDRVLVVNGDTPL 110 (456)
T ss_pred hcccc--------CceEEEcCC---------------------CCCcHHHHHHH-----HHHHhhcCCCcEEEEeCCccc
Confidence 66431 233433321 44666543332 334444467899999999986
Q ss_pred ccccCH-HHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCCh---hhhhhccccCCccccccccee
Q 010950 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDP---SLASAINQETGRLRFCWSNVC 354 (497)
Q Consensus 279 ~~~~Dp-~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~---~~~~~~~~~~g~~~f~~gNi~ 354 (497)
....+. .++..+ .+.++++-+.+-.+|.+. |++... +|+ |.++.|-++ .... + .....|++
T Consensus 111 i~~~~i~~li~~~--~~~~~~l~~~~~~~~~~~-g~v~~~--~g~--V~~~~ek~~~~~~~~~---~-----~~~~~~~G 175 (456)
T PRK14356 111 VTTDTIDDFLKEA--AGADLAFMTLTLPDPGAY-GRVVRR--NGH--VAAIVEAKDYDEALHG---P-----ETGEVNAG 175 (456)
T ss_pred CCHHHHHHHHHHH--hcCCEEEEEEEcCCCCCc-eEEEEc--CCe--EEEEEECCCCChHHhh---h-----hcCeEEEE
Confidence 433222 133332 255665555555556554 766552 563 444444322 2110 0 01245889
Q ss_pred eEEEehHHHHHHhh
Q 010950 355 LHMFTLDFLNQVAN 368 (497)
Q Consensus 355 ~~~f~l~fL~~~~~ 368 (497)
+++|+.++++++++
T Consensus 176 iY~f~~~~l~~ll~ 189 (456)
T PRK14356 176 IYYLRLDAVESLLP 189 (456)
T ss_pred EEEEEHHHHHHHHH
Confidence 99999999887765
No 15
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.07 E-value=6.7e-09 Score=105.68 Aligned_cols=182 Identities=18% Similarity=0.232 Sum_probs=123.4
Q ss_pred CEEEEEecCCCccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHH
Q 010950 119 KLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (497)
.+.+|+||||.||||.. ..||.|+|| .||+++++.++.+.. .++. -++|++.....+.
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv---~gkPmI~~~l~~l~~---------------aGi~-~I~ii~~~~~~~~ 63 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPI---YDKPMIYYPLSTLML---------------AGIR-DILIISTPQDTPR 63 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEE---CCEEHHHHHHHHHHH---------------CCCC-EEEEEecCCchHH
Confidence 46789999999999974 789999999 899999999998753 1222 2355666666778
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCC
Q 010950 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (497)
Q Consensus 196 t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vD 275 (497)
+.++|.+...||++ +.+..|.. |.|.|+.+..... +.. +-+ +.++..|
T Consensus 64 ~~~~l~~g~~~g~~---i~y~~q~~---------------------~~Gta~Al~~a~~------~i~-~~~-~~lv~gD 111 (292)
T PRK15480 64 FQQLLGDGSQWGLN---LQYKVQPS---------------------PDGLAQAFIIGEE------FIG-GDD-CALVLGD 111 (292)
T ss_pred HHHHHcCccccCce---eEEEECCC---------------------CCCHHHHHHHHHH------HhC-CCC-EEEEECC
Confidence 89999877778864 55666543 7799998776432 232 223 5666799
Q ss_pred cccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceee
Q 010950 276 NALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (497)
Q Consensus 276 N~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~ 355 (497)
|++....-..++-.|..++.++++-+.+..+|.. -|++... .+| .|+++.|-|.. + .-+.+|+++
T Consensus 112 ~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~-yGvv~~d-~~g--~v~~i~EKP~~------p-----~s~~a~~Gi 176 (292)
T PRK15480 112 NIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER-YGVVEFD-QNG--TAISLEEKPLQ------P-----KSNYAVTGL 176 (292)
T ss_pred eeeeccCHHHHHHHHHhCCCCeEEEEEEcCCccc-CcEEEEC-CCC--cEEEEEECCCC------C-----CCCEEEEEE
Confidence 9874333345777787777777665555555644 4887664 345 35566565421 1 112469999
Q ss_pred EEEehHHHHHH
Q 010950 356 HMFTLDFLNQV 366 (497)
Q Consensus 356 ~~f~l~fL~~~ 366 (497)
++|+-+.++.+
T Consensus 177 Y~~~~~v~~~~ 187 (292)
T PRK15480 177 YFYDNDVVEMA 187 (292)
T ss_pred EEEChHHHHHH
Confidence 99998876543
No 16
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.02 E-value=1.1e-08 Score=104.21 Aligned_cols=189 Identities=15% Similarity=0.163 Sum_probs=114.3
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHH
Q 010950 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (497)
Q Consensus 119 kvavvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (497)
.+.+|+||||.||||. ...||.|+|| .||+++++.++.+.. .++ --++....+..+.
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV---~gkPiI~~vl~~l~~---------------~Gi--~~ivivv~~~~~~ 62 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA---------------AGI--KEIVLVTHASKNA 62 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CCC--CEEEEEecCChHH
Confidence 4578999999999998 5779999999 899999999998753 122 2234444568889
Q ss_pred HHHHHhhcCCC------------------CCC-CCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhcc
Q 010950 196 TRKYFEGHKYF------------------GLE-SDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSK 256 (497)
Q Consensus 196 t~~~~~~~~~F------------------Gl~-~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg 256 (497)
+.+||.....+ +.+ .-+|.+..|. .|-|+||.......
T Consensus 63 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~---------------------~~lGtg~Av~~a~~-- 119 (297)
T TIGR01105 63 VENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQA---------------------QPLGLGHSILCARP-- 119 (297)
T ss_pred HHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEeeCC---------------------CcCchHHHHHHHHH--
Confidence 99999652100 000 0124444443 37799997655432
Q ss_pred HHHHHHHcCceEEEEEeCCcccccc-------cC-HHHHHHHhhcCCcEEEEEeecCCCCCccceEEEe---cCCCCe-E
Q 010950 257 LLEDMATRGIKYIDCYGVDNALVRV-------AD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR---GKGGPL-T 324 (497)
Q Consensus 257 ~l~~l~~~G~~yi~v~~vDN~L~~~-------~D-p~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~---~~~g~~-~ 324 (497)
+. +-+-+.+.+.|++. .. .| -.++-++.+.+..+.+-+.....+... |++... +.+|+. .
T Consensus 120 ----~l--~~~~flvv~gD~l~-~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~y-Gvv~~~~~~d~~g~v~~ 191 (297)
T TIGR01105 120 ----VV--GDNPFVVVLPDIII-DDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEY-SVIQTKEPLDREGKVSR 191 (297)
T ss_pred ----Hh--CCCCEEEEECCeec-cccccccchhHHHHHHHHHHHhCCcEEEEEEcCCCCccc-eEEEecccccCCCCeee
Confidence 22 22445677799863 21 11 135666665666553322222345444 777652 124543 6
Q ss_pred EEEeccCChhhhhhccccCCcccccccceeeEEEehHHHHHH
Q 010950 325 VVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 366 (497)
Q Consensus 325 vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f~l~fL~~~ 366 (497)
|+++.|-|..-.. ..-+..|+++++|+.+.++.+
T Consensus 192 I~~~~EKP~~~~~--------~~s~~~~~GiYi~~~~i~~~l 225 (297)
T TIGR01105 192 IVEFIEKPDQPQT--------LDSDLMAVGRYVLSADIWAEL 225 (297)
T ss_pred EeEEEECCCCccc--------CCcCEEEEEEEEECHHHHHHH
Confidence 7888876632110 011356999999999877644
No 17
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.01 E-value=7.5e-08 Score=102.41 Aligned_cols=243 Identities=19% Similarity=0.233 Sum_probs=145.7
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
++.+|+||||.||||+...||.|+|+ .|++++++.++.+++. ...| +|+++ +..+.+.+
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi---~gkPli~~~i~~l~~~---------------~~~i--~Ivv~-~~~~~i~~ 60 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTI---CGKPMLFYILKEAFAI---------------SDDV--HVVLH-HQKERIKE 60 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEE---CCccHHHHHHHHHHHc---------------CCcE--EEEEC-CCHHHHHH
Confidence 45689999999999999899999999 8999999999988641 0123 55554 56788888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.+. ++ .+.+..|+. ..+.|+|+.+..+. ...+++++.+.|+++
T Consensus 61 ~~~~~--~~----~v~~~~~~~-------------------~~~~gt~~al~~~~----------~~~d~vlv~~gD~p~ 105 (430)
T PRK14359 61 AVLEY--FP----GVIFHTQDL-------------------ENYPGTGGALMGIE----------PKHERVLILNGDMPL 105 (430)
T ss_pred HHHhc--CC----ceEEEEecC-------------------ccCCCcHHHHhhcc----------cCCCeEEEEECCccC
Confidence 88752 21 355555431 22457777665421 125789999999986
Q ss_pred ccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEE
Q 010950 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (497)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f 358 (497)
.++..+-.+.+.+.++.+-+.+..+|... |++... +| .++++.|-+....+ .......|+++++|
T Consensus 106 ---~~~~~l~~l~~~~~~~~v~~~~~~~~~~~-g~v~~d--~g--~v~~i~e~~~~~~~-------~~~~~~~~~Giyif 170 (430)
T PRK14359 106 ---VEKDELEKLLENDADIVMSVFHLADPKGY-GRVVIE--NG--QVKKIVEQKDANEE-------ELKIKSVNAGVYLF 170 (430)
T ss_pred ---CCHHHHHHHHhCCCCEEEEEEEcCCCccC-cEEEEc--CC--eEEEEEECCCCCcc-------cccceEEEeEEEEE
Confidence 35667777777777776666655555543 665442 45 34444332211100 01112468899999
Q ss_pred ehHHHHHHhhccccCccceeeecccCccCCCcccchhhhhHhhcCcC----CCceeEEEEecCccccccccCCCCCCCCH
Q 010950 359 TLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPY----APSTALFEVLREEEFAPVKNANGSNFDTP 434 (497)
Q Consensus 359 ~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~~~~~~klE~fifD~~~~----~~~~~~~~V~R~~eFsPvKn~~g~~~dsp 434 (497)
+.+++.++.+..... ..+-|.++.|+++. -.+..+++++. ..+.-|.+ .++.
T Consensus 171 ~~~~l~~~~~~~~~~------------------~~~~e~~l~d~i~~l~~~g~~v~~~~~~~-~~w~dI~t-----~~dl 226 (430)
T PRK14359 171 DRKLLEEYLPLLKNQ------------------NAQKEYYLTDIIALAIEKGETIKAVFVDE-ENFMGVNS-----KFEL 226 (430)
T ss_pred EHHHHHHHHHhcCcc------------------cccCceehhhHHHHHHHcCCeEEEEEcCC-CEEeCCCC-----HHHH
Confidence 999998776432110 11223344455433 12455666552 24444422 2335
Q ss_pred HHHHHHHHHHHHHHHHHcCcee
Q 010950 435 DSARLLVLRLHTRWVIAAGGFL 456 (497)
Q Consensus 435 ~ta~~~l~~~~~~~l~~~G~~~ 456 (497)
..|+..+....++-+...|+..
T Consensus 227 ~~a~~~l~~~~~~~~~~~g~~~ 248 (430)
T PRK14359 227 AKAEEIMQERIKKNAMKQGVIM 248 (430)
T ss_pred HHHHHHHHHHHHHHHHHcCCEE
Confidence 5666555555444445667543
No 18
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.00 E-value=7.5e-09 Score=108.15 Aligned_cols=193 Identities=10% Similarity=0.104 Sum_probs=118.3
Q ss_pred CCEEEEEecCCCccccC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCch
Q 010950 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG---~~~PKg~~~i~l~sgk-sllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~ 193 (497)
+++.+|+||||.||||. .+.||.|+|| .|| +++++.++.+.+ .++ -=+++...+.+
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV---~gk~PlIe~~l~~L~~---------------~Gi--~~I~iv~~~~~ 60 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPF---GGRYRLIDFPLSNMVN---------------AGI--RNVFIFFKNKE 60 (369)
T ss_pred CcEEEEEECCCCCccccccccCCccccccc---CCeeeEEEEEhhhhhc---------------cCC--CEEEEEeCCCc
Confidence 46788999999999997 5789999999 899 899999998854 122 22444445555
Q ss_pred H-HHHHHHhhcCCCCCCCCc---EEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEE
Q 010950 194 D-ATRKYFEGHKYFGLESDQ---VTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYI 269 (497)
Q Consensus 194 ~-~t~~~~~~~~~FGl~~~~---v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi 269 (497)
+ .+++||.+...||++..+ +.++.|+ ..|-|.|+.+..... .+.+...+-+++
T Consensus 61 ~~~I~~~l~~~~~~~~~~~~~~~~~~~~~e--------------------~~~l~tg~~~a~~~a---~~~l~~~~~~~~ 117 (369)
T TIGR02092 61 RQSLFDHLGSGREWDLHRKRDGLFVFPYND--------------------RDDLSEGGKRYFSQN---LEFLKRSTSEYT 117 (369)
T ss_pred HHHHHHHHhCCCCCCcccccCcEEEEeccC--------------------CCCcccChHHHHHHH---HHHHHhCCCCEE
Confidence 5 999999876677765321 1222222 123466665433222 122322234789
Q ss_pred EEEeCCcccccccCHHHHHHHhhcCCcEEEEEeecC--CCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCccc
Q 010950 270 DCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKA--YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLR 347 (497)
Q Consensus 270 ~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~--~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~ 347 (497)
++.+.|++ ....--.++-+|.++++++++-+.+-. .+...+|++... .+|+ +.++.+-++. . . .
T Consensus 118 lvlnGD~l-~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~-~~g~--v~~~~~~~~~-----~---~--~ 183 (369)
T TIGR02092 118 VVLNSHMV-CNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFD-ESGK--VKSIGQNLNP-----E---E--E 183 (369)
T ss_pred EEECCCEE-EecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEc-CCCC--EEeccccCCC-----C---C--c
Confidence 99999996 333333477888888888866554432 455565665543 2453 3333221110 0 0 1
Q ss_pred ccccceeeEEEehHHHHHHhh
Q 010950 348 FCWSNVCLHMFTLDFLNQVAN 368 (497)
Q Consensus 348 f~~gNi~~~~f~l~fL~~~~~ 368 (497)
. ..|+++++|+-+.+.++++
T Consensus 184 ~-~~~~Giyi~~~~~l~~~l~ 203 (369)
T TIGR02092 184 E-NISLDIYIVSTDLLIELLY 203 (369)
T ss_pred c-eeeeeEEEEEHHHHHHHHH
Confidence 1 2478999999987766654
No 19
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.00 E-value=1.2e-08 Score=103.42 Aligned_cols=178 Identities=16% Similarity=0.202 Sum_probs=119.1
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||.. ..||.|+|| .||+++++.++.+.. .++. .++|.|..+..+.+++
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv---~gkPmI~~~L~~l~~---------------aGi~-~I~iv~~~~~~~~~~~ 62 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLML---------------AGIR-DILIISTPQDTPRFQQ 62 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEE---CCEEhHHHHHHHHHH---------------CCCC-EEEEEecCCcHHHHHH
Confidence 58999999999974 789999999 899999999998753 1221 2356777777888999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
+|.....||++ +.+..|+ .|.|.|+.+..... +. +-+.+.+++.||++
T Consensus 63 ~lg~g~~~g~~---i~~~~q~---------------------~~~Gta~al~~a~~------~l--~~~~~~li~gD~i~ 110 (286)
T TIGR01207 63 LLGDGSQWGVN---LSYAVQP---------------------SPDGLAQAFIIGED------FI--GGDPSALVLGDNIF 110 (286)
T ss_pred HhccccccCce---EEEEEcc---------------------CCCCHHHHHHHHHH------Hh--CCCCEEEEECCEec
Confidence 99876677763 5555554 26788887765432 22 22445566799986
Q ss_pred ccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEE
Q 010950 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (497)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f 358 (497)
....-..++-.+...+.++++-+.+..+|.. -|++... .+| .|+++.|-|.. + .+ +..|+++++|
T Consensus 111 ~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~-yGvv~~d-~~g--~V~~i~EKp~~------~---~s--~~~~~GiYi~ 175 (286)
T TIGR01207 111 YGHDLSDLLKRAAARESGATVFAYQVSDPER-YGVVEFD-SNG--RAISIEEKPAQ------P---KS--NYAVTGLYFY 175 (286)
T ss_pred cccCHHHHHHHHHhcCCCcEEEEEEccCHHH-CceEEEC-CCC--eEEEEEECCCC------C---CC--CEEEEEEEEE
Confidence 3322245677777777777655555455644 4887664 345 46666664421 1 11 2469999999
Q ss_pred ehHHHHH
Q 010950 359 TLDFLNQ 365 (497)
Q Consensus 359 ~l~fL~~ 365 (497)
+-+.++.
T Consensus 176 ~~~i~~~ 182 (286)
T TIGR01207 176 DNRVVEI 182 (286)
T ss_pred chHHHHH
Confidence 9887543
No 20
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.95 E-value=5.8e-08 Score=103.93 Aligned_cols=248 Identities=17% Similarity=0.119 Sum_probs=139.1
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHH
Q 010950 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (497)
Q Consensus 120 vavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~ 199 (497)
+++|+||||.||||+.+.||.|+|+ .|++++++.++++.+ .+. ...+|.+. +..+.+.++
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~---------------~g~-~~iivvv~-~~~~~i~~~ 61 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPL---GGKSLVERVLDSCEE---------------LKP-DRRLVIVG-HQAEEVEQS 61 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEE---CChhHHHHHHHHHHh---------------CCC-CeEEEEEC-CCHHHHHHH
Confidence 5789999999999998889999998 899999999998753 111 13345454 445667777
Q ss_pred HhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcccc
Q 010950 200 FEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 279 (497)
Q Consensus 200 ~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~ 279 (497)
+.++. .+.+..|. .+.|.++.+.... +.+. ..-++++|...|.++.
T Consensus 62 ~~~~~-------~i~~v~~~---------------------~~~G~~~sv~~~~-----~~l~-~~~~~vlV~~~D~P~i 107 (450)
T PRK14360 62 LAHLP-------GLEFVEQQ---------------------PQLGTGHAVQQLL-----PVLK-GFEGDLLVLNGDVPLL 107 (450)
T ss_pred hcccC-------CeEEEEeC---------------------CcCCcHHHHHHHH-----HHhh-ccCCcEEEEeCCcccc
Confidence 76421 24444332 1456665554332 2222 2235689999999864
Q ss_pred cccCH-HHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEE
Q 010950 280 RVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (497)
Q Consensus 280 ~~~Dp-~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f 358 (497)
...+. .++-.+...++++.+-+.+..+|... |.+... ++|+ |++..|-+....... .+ +..|+++++|
T Consensus 108 ~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~-g~~~~d-~~g~--v~~~~ek~~~~~~~~---~~----~~~~~Giy~f 176 (450)
T PRK14360 108 RPETLEALLNTHRSSNADVTLLTARLPNPKGY-GRVFCD-GNNL--VEQIVEDRDCTPAQR---QN----NRINAGIYCF 176 (450)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEEecCCCCCc-cEEEEC-CCCC--EEEEEECCCCChhHh---cC----cEEEEEEEEE
Confidence 33222 24555666677776544454455543 665443 3453 555544432111110 01 2458899999
Q ss_pred ehHHHHHHhhccccCccceeeecccCccCCCcccchhhhhHhhcCcCCCceeEEEEecCccccccccCCCCCCCCHHHHH
Q 010950 359 TLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSAR 438 (497)
Q Consensus 359 ~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~~~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~~~dsp~ta~ 438 (497)
+.+.+.++++.... .+.+-|.++.|.++...+...+.+.-..+..-+.+ .+..+.|+
T Consensus 177 ~~~~l~~~~~~~~~------------------~~~~~e~~~td~i~~~~~~~~~~v~~~~~~~~i~~-----~~dl~~~~ 233 (450)
T PRK14360 177 NWPALAEVLPKLSS------------------NNDQKEYYLTDTVSLLDPVMAVEVEDYQEINGIND-----RKQLAQCE 233 (450)
T ss_pred EHHHHHHHHhhccc------------------cccCCceeHHHHHHHHhhceEEecCCHHHhhcCCC-----HHHHHHHH
Confidence 99888877642210 01234455666655544444455432112211211 23345666
Q ss_pred HHHHHHHHHHHHHcCce
Q 010950 439 LLVLRLHTRWVIAAGGF 455 (497)
Q Consensus 439 ~~l~~~~~~~l~~~G~~ 455 (497)
..+.....+++...|..
T Consensus 234 ~~l~~~~~~~~~d~~~~ 250 (450)
T PRK14360 234 EILQNRIKEKWMLAGVT 250 (450)
T ss_pred HHHHHHHHHHHHhcCcE
Confidence 66655555555566665
No 21
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=98.94 E-value=1.8e-08 Score=98.67 Aligned_cols=184 Identities=17% Similarity=0.260 Sum_probs=127.0
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgk-sllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
.|+||||.||||. .+.||.|+|+ .|+ +++++.++++.. .+.. -.++.++.+..+.+.
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i---~g~~pli~~~l~~l~~---------------~g~~-~ii~V~~~~~~~~i~ 62 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPI---GGKYPLIDYVLENLAN---------------AGIK-EIIVVVNGYKEEQIE 62 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEE---TTEEEHHHHHHHHHHH---------------TTCS-EEEEEEETTTHHHHH
T ss_pred EEEECCCCCccCchhhhcccccccee---cCCCcchhhhhhhhcc---------------cCCc-eEEEEEeeccccccc
Confidence 4788999999997 6789999998 788 999999998854 1222 126667777888999
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcC-ceEEEEEeCCc
Q 010950 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG-IKYIDCYGVDN 276 (497)
Q Consensus 198 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G-~~yi~v~~vDN 276 (497)
+++++...+++ +|.+..|+. |.|.|+....... .+.... -+++.+.+.|+
T Consensus 63 ~~~~~~~~~~~---~i~~i~~~~---------------------~~Gta~al~~a~~-----~i~~~~~~~~~lv~~gD~ 113 (248)
T PF00483_consen 63 EHLGSGYKFGV---KIEYIVQPE---------------------PLGTAGALLQALD-----FIEEEDDDEDFLVLNGDI 113 (248)
T ss_dssp HHHTTSGGGTE---EEEEEEESS---------------------SSCHHHHHHHTHH-----HHTTSEE-SEEEEETTEE
T ss_pred ccccccccccc---cceeeeccc---------------------ccchhHHHHHHHH-----HhhhccccceEEEEeccc
Confidence 99998765652 466776654 4488887776543 222222 24699999999
Q ss_pred ccccccCHHHHHHHhhcCCc--EEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCccccccccee
Q 010950 277 ALVRVADPTFLGYFIDKGVS--AGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (497)
Q Consensus 277 ~L~~~~Dp~~lG~~~~~~~~--~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~ 354 (497)
+. ...-..++-.|...+.+ +++...+...+ .+-|++... .+| .|+++-|-|..... ....|++
T Consensus 114 i~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d-~~~--~V~~~~EKP~~~~~----------~~~~~~G 178 (248)
T PF00483_consen 114 IF-DDDLQDMLEFHRESNADGTVTLLVVPVEDP-SRYGVVEVD-EDG--RVIRIVEKPDNPNA----------SNLINTG 178 (248)
T ss_dssp EE-STTHHHHHHHHHHHSSCESEEEEEEESSGG-GGSEEEEEE-TTS--EEEEEEESCSSHSH----------SSEEEEE
T ss_pred cc-cchhhhHHHhhhcccccccccccccccccc-ccceeeeec-cce--eEEEEeccCccccc----------ceeccCc
Confidence 85 44335588899988884 44555554443 444776665 234 67777776643210 1356899
Q ss_pred eEEEehHHHHHHhh
Q 010950 355 LHMFTLDFLNQVAN 368 (497)
Q Consensus 355 ~~~f~l~fL~~~~~ 368 (497)
+++|+-+.+..+++
T Consensus 179 ~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 179 IYIFKPEIFDFLLE 192 (248)
T ss_dssp EEEEETHHHHHHHH
T ss_pred eEEEcchHHHHHhh
Confidence 99999999987754
No 22
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.94 E-value=7.5e-08 Score=103.11 Aligned_cols=177 Identities=21% Similarity=0.230 Sum_probs=113.3
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHH
Q 010950 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200 (497)
Q Consensus 121 avvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~ 200 (497)
.+|+||||.||||+...||.++|+ .||+++++.++.+... ...| +|.|+ +..+.+.+++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v---~gkpli~~~l~~l~~~---------------~~~i--~vv~~-~~~~~i~~~~ 60 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKI---SGKPMINWVIDTAKKV---------------AQKV--GVVLG-HEAELVKKLL 60 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEE---CCeeHHHHHHHHHHhc---------------CCcE--EEEeC-CCHHHHHHhc
Confidence 468999999999998889999998 8999999999977531 1122 55454 4456666665
Q ss_pred hhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccccc
Q 010950 201 EGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 280 (497)
Q Consensus 201 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~~ 280 (497)
.+ .+.++.|+ .|.|.++....... .+ . .-+++++.+.|+++..
T Consensus 61 ~~---------~~~~~~~~---------------------~~~g~~~ai~~a~~-----~l-~-~~~~vlv~~gD~p~i~ 103 (448)
T PRK14357 61 PE---------WVKIFLQE---------------------EQLGTAHAVMCARD-----FI-E-PGDDLLILYGDVPLIS 103 (448)
T ss_pred cc---------ccEEEecC---------------------CCCChHHHHHHHHH-----hc-C-cCCeEEEEeCCcccCC
Confidence 42 23344443 14466665544322 22 1 2478999999998654
Q ss_pred ccC-HHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEEe
Q 010950 281 VAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFT 359 (497)
Q Consensus 281 ~~D-p~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f~ 359 (497)
..| -.++-++.+.++++++-+.+..+|... |++... +|+..++|...-+.... ..+..|+++++|+
T Consensus 104 ~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~-g~v~~d--~g~v~~~e~~~~~~~~~----------~~~~~~~GiYv~~ 170 (448)
T PRK14357 104 ENTLKRLIEEHNRKGADVTILVADLEDPTGY-GRIIRD--GGKYRIVEDKDAPEEEK----------KIKEINTGIYVFS 170 (448)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEcCCCCCc-EEEEEc--CCeEEEEECCCCChHHh----------cCcEEEeEEEEEE
Confidence 444 236677777788887766665556554 666543 56555566543221110 1124699999999
Q ss_pred hHHHHHHhh
Q 010950 360 LDFLNQVAN 368 (497)
Q Consensus 360 l~fL~~~~~ 368 (497)
.+.|.++++
T Consensus 171 ~~~l~~~~~ 179 (448)
T PRK14357 171 GDFLLEVLP 179 (448)
T ss_pred HHHHHHHHH
Confidence 998877664
No 23
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=98.91 E-value=3.7e-08 Score=96.63 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=112.1
Q ss_pred EEEEecCCCccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 121 AVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 121 avvlLAGG~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
.+|+||||.||||+. ..||.++|+ .|++++++.++.+.+ .++. ..++.++....+.+.
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv---~~~pli~~~l~~l~~---------------~gi~-~i~vv~~~~~~~~~~ 62 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPV---YDKPMIYYPLSTLML---------------AGIR-EILIISTPEDLPLFK 62 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEE---CCEEhHHHHHHHHHH---------------CCCC-EEEEEeCcchHHHHH
Confidence 479999999999975 789999999 599999999998743 1221 346666666668889
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcc
Q 010950 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (497)
Q Consensus 198 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~ 277 (497)
++|.....+|+. |.+-.|. .|.|.|+.+.+... +.. -+.+++.+.|++
T Consensus 63 ~~l~~~~~~~~~---i~~~~~~---------------------~~~G~~~al~~a~~------~~~--~~~~lv~~gD~~ 110 (240)
T cd02538 63 ELLGDGSDLGIR---ITYAVQP---------------------KPGGLAQAFIIGEE------FIG--DDPVCLILGDNI 110 (240)
T ss_pred HHHhcccccCce---EEEeeCC---------------------CCCCHHHHHHHHHH------hcC--CCCEEEEECCEE
Confidence 999865555542 3332221 25577766543322 121 245677789998
Q ss_pred cccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEE
Q 010950 278 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (497)
Q Consensus 278 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~ 357 (497)
+....--.++-++..++.++++-+.+..+|. .-|++... .+| .|+++.|-|... .. ...|+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~~d-~~g--~v~~~~ekp~~~---------~~--~~~~~Giyi 175 (240)
T cd02538 111 FYGQGLSPILQRAAAQKEGATVFGYEVNDPE-RYGVVEFD-ENG--RVLSIEEKPKKP---------KS--NYAVTGLYF 175 (240)
T ss_pred EccHHHHHHHHHHHhcCCCcEEEEEECCchh-cCceEEec-CCC--cEEEEEECCCCC---------CC--CeEEEEEEE
Confidence 5332122356667667777765555444443 34776654 345 466666543211 01 245899999
Q ss_pred EehHHHHH
Q 010950 358 FTLDFLNQ 365 (497)
Q Consensus 358 f~l~fL~~ 365 (497)
|+-++++.
T Consensus 176 ~~~~~l~~ 183 (240)
T cd02538 176 YDNDVFEI 183 (240)
T ss_pred ECHHHHHH
Confidence 99987743
No 24
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.91 E-value=4.3e-08 Score=102.83 Aligned_cols=196 Identities=16% Similarity=0.220 Sum_probs=122.3
Q ss_pred CCEEEEEecCCCccccCC---CCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCch
Q 010950 118 GKLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG~---~~PKg~~~i~l~sgk-sllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~ 193 (497)
+++-+|+||||.||||.. +.||.|+|| .|| +++++.++.+.+ .++. .++|.| .+..
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv---~gk~pli~~~l~~l~~---------------~Gi~-~i~iv~-~~~~ 61 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPF---GGKYRIIDFTLSNCAN---------------SGID-TVGVLT-QYQP 61 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeee---CCceeehhHHHHHHHh---------------CCCC-EEEEEe-cCCH
Confidence 468899999999999985 789999999 899 899999998753 1222 224555 6788
Q ss_pred HHHHHHHhhcCCCCCCCC--cEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEE
Q 010950 194 DATRKYFEGHKYFGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDC 271 (497)
Q Consensus 194 ~~t~~~~~~~~~FGl~~~--~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v 271 (497)
+.+.++|++...|+++.. .+.+. |.. ...+. ...|.|+|+.+..... .+....-++++|
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~~~i~-~~~---~~~~~----------~~~~~Gta~al~~a~~-----~l~~~~~~~~lV 122 (380)
T PRK05293 62 LELNNHIGIGSPWDLDRINGGVTIL-PPY---SESEG----------GKWYKGTAHAIYQNID-----YIDQYDPEYVLI 122 (380)
T ss_pred HHHHHHHhCCCcccccCCCCCEEEe-CCc---ccCCC----------CcccCCcHHHHHHHHH-----HHHhCCCCEEEE
Confidence 999999987666776532 12221 100 00000 0124688776554322 232223478999
Q ss_pred EeCCcccccccCHHHHHHHhhcCCcEEEEEeec--CCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCccccc
Q 010950 272 YGVDNALVRVADPTFLGYFIDKGVSAGAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFC 349 (497)
Q Consensus 272 ~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k--~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~ 349 (497)
.+.|++. ...--.++-.|...++++++-+.+. .+| .+-|++... .+| .|.++.|-|... .. .
T Consensus 123 ~~gD~l~-~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~-~~yG~v~~d-~~g--~V~~~~eKp~~~---------~~--~ 186 (380)
T PRK05293 123 LSGDHIY-KMDYDKMLDYHKEKEADVTIAVIEVPWEEA-SRFGIMNTD-ENM--RIVEFEEKPKNP---------KS--N 186 (380)
T ss_pred ecCCEEE-cCCHHHHHHHHHhcCCCEEEEEEEcchhhc-cccCEEEEC-CCC--cEEEEEeCCCCC---------Cc--c
Confidence 9999974 3322346777777788765443222 233 344777654 244 466666654211 01 2
Q ss_pred ccceeeEEEehHHHHHHhh
Q 010950 350 WSNVCLHMFTLDFLNQVAN 368 (497)
Q Consensus 350 ~gNi~~~~f~l~fL~~~~~ 368 (497)
..|+++++|+.+.|.+++.
T Consensus 187 ~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 187 LASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred eeeeEEEEEcHHHHHHHHH
Confidence 4599999999998877654
No 25
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.89 E-value=4e-08 Score=95.14 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=100.3
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||+ ...||+|+|| .|++++++.++.+.+ .++. .++|.|. +..+.+.+
T Consensus 3 aiIla~G~g~Rl~plt~~~pK~llpi---~g~piI~~~l~~l~~---------------~Gi~-~I~iv~~-~~~~~i~~ 62 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKPRCLLPL---ANVPLIDYTLEFLAL---------------NGVE-EVFVFCC-SHSDQIKE 62 (217)
T ss_pred EEEEcCCCcccccccccCCCceeeEE---CCEehHHHHHHHHHH---------------CCCC-eEEEEeC-CCHHHHHH
Confidence 6899999999998 5789999999 899999999998754 1221 2356665 57889999
Q ss_pred HHhhcCCCCCCC--CcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCc
Q 010950 199 YFEGHKYFGLES--DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (497)
Q Consensus 199 ~~~~~~~FGl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN 276 (497)
+|++..++++.. ..+.+..|. .+.|.|+++..+...+.+ .+.+.+.+.|+
T Consensus 63 ~l~~~~~~~~~~~~~~i~~~~~~---------------------~~~~~~~al~~~~~~~~~-------~~~flv~~gD~ 114 (217)
T cd04197 63 YIEKSKWSKPKSSLMIVIIIMSE---------------------DCRSLGDALRDLDAKGLI-------RGDFILVSGDV 114 (217)
T ss_pred HHhhccccccccCcceEEEEeCC---------------------CcCccchHHHHHhhcccc-------CCCEEEEeCCe
Confidence 999865555432 123322221 145678877665443221 35677999999
Q ss_pred ccccccCH-HHHHHHhhc-----CCcEEEEEeecCCCCC-----ccceEEEecCCCCeEEEEeccCC
Q 010950 277 ALVRVADP-TFLGYFIDK-----GVSAGAKVVRKAYPQE-----KVGVFVRRGKGGPLTVVEYSELD 332 (497)
Q Consensus 277 ~L~~~~Dp-~~lG~~~~~-----~~~~~~kvv~k~~p~e-----~vGvi~~~~~~g~~~vvEYsel~ 332 (497)
+. ..|. .++.+|.+. ++++++-+.+-..+.. .-|++....++| +|+.+.|-|
T Consensus 115 i~--~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~--~v~~~~ekp 177 (217)
T cd04197 115 VS--NIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTS--RLLHYEELP 177 (217)
T ss_pred ee--ccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCC--cEEEEeccc
Confidence 74 3444 477888773 6777654444333321 135665542224 465666544
No 26
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.88 E-value=4.9e-08 Score=103.65 Aligned_cols=203 Identities=14% Similarity=0.243 Sum_probs=123.4
Q ss_pred CCEEEEEecCCCccccC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCch
Q 010950 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG---~~~PKg~~~i~l~sgk-sllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~ 193 (497)
+++.+|+||||.||||. .+.||.|+|| .|| +++++.++.+.. .+ |-=+++...+..
T Consensus 4 ~~~~avILAaG~GtRl~PLT~~~PK~llPv---~gk~plI~~~L~~l~~---------------~G--i~~i~iv~~~~~ 63 (407)
T PRK00844 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPF---GGSYRLIDFVLSNLVN---------------SG--YLRIYVLTQYKS 63 (407)
T ss_pred CceEEEEECCCCCCccchhhcCCcccceee---CCcceEhHHHHHHHHH---------------CC--CCEEEEEeccCH
Confidence 58899999999999998 8899999999 898 999999988753 12 222444556889
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEe
Q 010950 194 DATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (497)
Q Consensus 194 ~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~ 273 (497)
+.+.++|.+. +++....+.++.. .|.-...+ ...|.|+||.+.... +.+....-+++++.+
T Consensus 64 ~~i~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~----------~~~~lGta~al~~a~-----~~i~~~~~~~~lv~~ 124 (407)
T PRK00844 64 HSLDRHISQT--WRLSGLLGNYITP--VPAQQRLG----------KRWYLGSADAIYQSL-----NLIEDEDPDYVVVFG 124 (407)
T ss_pred HHHHHHHHhC--cCccccCCCeEEE--CCcccCCC----------CCcccCCHHHHHHHH-----HHHHhcCCCEEEEec
Confidence 9999999742 3322112222210 00000000 122569988765432 233333447899999
Q ss_pred CCcccccccCHHHHHHHhhcCCcEEEEEe--ecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCccccccc
Q 010950 274 VDNALVRVADPTFLGYFIDKGVSAGAKVV--RKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWS 351 (497)
Q Consensus 274 vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv--~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~g 351 (497)
.|++. ...--.++-+|..+++++.+-+. +...+.. -|++... .+| .|.++.|-|........ .......
T Consensus 125 gD~v~-~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~-~Gvv~~d-~~g--~v~~~~eKp~~~~~~~~----~~~~~~~ 195 (407)
T PRK00844 125 ADHVY-RMDPRQMVDFHIESGAGVTVAAIRVPREEASA-FGVIEVD-PDG--RIRGFLEKPADPPGLPD----DPDEALA 195 (407)
T ss_pred CCEEE-cCCHHHHHHHHHhcCCcEEEEEEecchHHccc-CCEEEEC-CCC--CEEEEEECCCCcccccC----CCCCcEE
Confidence 99973 33323578888888888654443 2234444 4777654 245 35566655532110000 0011246
Q ss_pred ceeeEEEehHHHHHHhh
Q 010950 352 NVCLHMFTLDFLNQVAN 368 (497)
Q Consensus 352 Ni~~~~f~l~fL~~~~~ 368 (497)
|++++.|+.++|.++++
T Consensus 196 ~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 196 SMGNYVFTTDALVDALR 212 (407)
T ss_pred EeEEEEEeHHHHHHHHH
Confidence 99999999999876654
No 27
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=98.87 E-value=1.1e-07 Score=92.65 Aligned_cols=177 Identities=22% Similarity=0.317 Sum_probs=112.9
Q ss_pred EEEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 121 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 121 avvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
.+|+||||.||||+ ...||.++|| .|++++++.++.+.+ .++. .++|.|+. ..+.+.
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l~~i---~g~~li~~~l~~l~~---------------~~~~-~i~vv~~~-~~~~~~ 61 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQLIPV---AGKPIIQYAIEDLRE---------------AGIE-DIGIVVGP-TGEEIK 61 (236)
T ss_pred eEEEECCCccccccccccCCCceeeEE---CCcchHHHHHHHHHH---------------CCCC-EEEEEcCC-CHHHHH
Confidence 57899999999996 5789999999 799999999988753 1221 33666666 788899
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcc
Q 010950 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (497)
Q Consensus 198 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~ 277 (497)
+++++...++++ +.+..|. .|.|.|+....-.. .+ . + ..+.+.+.|.+
T Consensus 62 ~~~~~~~~~~~~---i~~~~~~---------------------~~~g~~~sl~~a~~-----~i-~-~-~~~li~~~D~~ 109 (236)
T cd04189 62 EALGDGSRFGVR---ITYILQE---------------------EPLGLAHAVLAARD-----FL-G-D-EPFVVYLGDNL 109 (236)
T ss_pred HHhcchhhcCCe---EEEEECC---------------------CCCChHHHHHHHHH-----hc-C-C-CCEEEEECCee
Confidence 999875555543 4444332 24577665554322 12 1 2 33556778987
Q ss_pred cccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEE
Q 010950 278 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (497)
Q Consensus 278 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~ 357 (497)
. ...--.++-.+...+.++++-+.+..++.. -|++... +| .|.++.|-|... . ....|+++++
T Consensus 110 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~d--~~--~v~~~~ek~~~~---------~--~~~~~~Giy~ 172 (236)
T cd04189 110 I-QEGISPLVRDFLEEDADASILLAEVEDPRR-FGVAVVD--DG--RIVRLVEKPKEP---------P--SNLALVGVYA 172 (236)
T ss_pred c-CcCHHHHHHHHHhcCCceEEEEEECCCccc-ceEEEEc--CC--eEEEEEECCCCC---------C--CCEEEEEEEE
Confidence 5 332223556677788888777766554433 4766543 34 566766544210 0 1245899999
Q ss_pred EehHHHHHH
Q 010950 358 FTLDFLNQV 366 (497)
Q Consensus 358 f~l~fL~~~ 366 (497)
|+.++++.+
T Consensus 173 ~~~~~~~~l 181 (236)
T cd04189 173 FTPAIFDAI 181 (236)
T ss_pred eCHHHHHHH
Confidence 998877544
No 28
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=98.87 E-value=7.7e-08 Score=95.51 Aligned_cols=183 Identities=16% Similarity=0.278 Sum_probs=115.1
Q ss_pred EEEecCC--CccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHH
Q 010950 122 VLLLSGG--QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (497)
Q Consensus 122 vvlLAGG--~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t 196 (497)
+|+|||| .||||.. ..||.|+|+ .|++++++.++.+..+ .+ +.-+++...+..+.+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv---~g~plI~~~l~~l~~~--------------~g--i~~i~iv~~~~~~~i 61 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPV---AGKPMIHHHIEACAKV--------------PD--LKEVLLIGFYPESVF 61 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeE---CCeeHHHHHHHHHHhc--------------CC--CcEEEEEecCCHHHH
Confidence 3788999 8999985 789999999 8999999999887431 02 222444455688889
Q ss_pred HHHHhhcC-CCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCC
Q 010950 197 RKYFEGHK-YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (497)
Q Consensus 197 ~~~~~~~~-~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vD 275 (497)
.+++.+.. .+|+ .|.+..|. .|-|.|+....... .+....-++++|.+.|
T Consensus 62 ~~~l~~~~~~~~~---~i~~~~~~---------------------~~~Gt~~al~~a~~-----~l~~~~~~~~lv~~gD 112 (257)
T cd06428 62 SDFISDAQQEFNV---PIRYLQEY---------------------KPLGTAGGLYHFRD-----QILAGNPSAFFVLNAD 112 (257)
T ss_pred HHHHHhcccccCc---eEEEecCC---------------------ccCCcHHHHHHHHH-----HhhccCCCCEEEEcCC
Confidence 99997632 2333 23333322 25588887655332 2222234689999999
Q ss_pred cccccccCHHHHHHHhhcCCcEEEEEeec--CCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccce
Q 010950 276 NALVRVADPTFLGYFIDKGVSAGAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNV 353 (497)
Q Consensus 276 N~L~~~~Dp~~lG~~~~~~~~~~~kvv~k--~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi 353 (497)
++. ...--.++.+|..+++++++-+.+. ..+... |++.....+| .|.++.|-|.... . ...|+
T Consensus 113 ~~~-~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~y-g~v~~d~~~g--~v~~~~Ekp~~~~---------~--~~~~~ 177 (257)
T cd06428 113 VCC-DFPLQELLEFHKKHGASGTILGTEASREQASNY-GCIVEDPSTG--EVLHYVEKPETFV---------S--DLINC 177 (257)
T ss_pred eec-CCCHHHHHHHHHHcCCCEEEEEEEccccccccc-cEEEEeCCCC--eEEEEEeCCCCcc---------c--ceEEE
Confidence 983 3322347888888888876554432 233333 7765531234 4556665443110 1 24699
Q ss_pred eeEEEehHHHHHHh
Q 010950 354 CLHMFTLDFLNQVA 367 (497)
Q Consensus 354 ~~~~f~l~fL~~~~ 367 (497)
++++|+.+.++.+.
T Consensus 178 Giyi~~~~~~~~i~ 191 (257)
T cd06428 178 GVYLFSPEIFDTIK 191 (257)
T ss_pred EEEEECHHHHHHHh
Confidence 99999999886543
No 29
>PRK10122 GalU regulator GalF; Provisional
Probab=98.86 E-value=1.2e-07 Score=96.78 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=114.7
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHH
Q 010950 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (497)
Q Consensus 119 kvavvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (497)
++.+|+||||.||||. ...||.|+|| .||+++++.++.+.. .++. .++|+ ..+..+.
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi---~gkpiI~~~l~~l~~---------------~Gi~-~i~iv-~~~~~~~ 62 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA---------------AGIK-EIVLV-THASKNA 62 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CCCC-EEEEE-cCCChHH
Confidence 6778999999999998 5779999999 899999999998754 1222 22444 4578899
Q ss_pred HHHHHhhcCCCCCC---------------------CCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhh
Q 010950 196 TRKYFEGHKYFGLE---------------------SDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKS 254 (497)
Q Consensus 196 t~~~~~~~~~FGl~---------------------~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~ 254 (497)
+.+||.. + ++++ ..++.+..|. .|-|+|+.+.....
T Consensus 63 i~~~~~~-~-~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~q~---------------------~~lGtg~al~~a~~ 119 (297)
T PRK10122 63 VENHFDT-S-YELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQG---------------------QPLGLGHSILCARP 119 (297)
T ss_pred HHHHHhc-c-hhHHHHHhhcchhhhHHhhhhccCCCceEEEeecC---------------------CcCchHHHHHHHHH
Confidence 9999963 2 2111 0134444443 26789887665433
Q ss_pred ccHHHHHHHcCceEEEEEeCCcccccc-------cC-HHHHHHHhhcCCcEEEEEeecCCCCCccceEEEec---CCCCe
Q 010950 255 SKLLEDMATRGIKYIDCYGVDNALVRV-------AD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG---KGGPL 323 (497)
Q Consensus 255 sg~l~~l~~~G~~yi~v~~vDN~L~~~-------~D-p~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~---~~g~~ 323 (497)
.+ +-+-..+.+.|++ ... .| -.++-+|...++++.+-......+.. -|++.... .+|..
T Consensus 120 -----~l---~~~~fvvi~gD~l-~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~~~-yGvv~~d~~~~~~g~v 189 (297)
T PRK10122 120 -----AI---GDNPFVVVLPDVV-IDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSE-YSVIQTKEPLDREGKV 189 (297)
T ss_pred -----Hc---CCCCEEEEECCee-ccCccccccchhHHHHHHHHHHhCCcEEEEEECCCCCCC-ceEEEecCcccCCCCe
Confidence 22 2233455668886 331 12 23667777777775433222234444 48776631 24443
Q ss_pred -EEEEeccCChhhhhhccccCCcccccccceeeEEEehHHHHHH
Q 010950 324 -TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 366 (497)
Q Consensus 324 -~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f~l~fL~~~ 366 (497)
+|+++.|-|...... .-+..|+++++|+-+.++.+
T Consensus 190 ~~I~~~~EKp~~~~~~--------~s~~~~~GiYi~~~~i~~~l 225 (297)
T PRK10122 190 SRIVEFIEKPDQPQTL--------DSDLMAVGRYVLSADIWPEL 225 (297)
T ss_pred eeEEEEEECCCCcccC--------CccEEEEEEEEECHHHHHHH
Confidence 677877765321100 11246999999999877655
No 30
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=98.84 E-value=9.1e-08 Score=93.42 Aligned_cols=180 Identities=18% Similarity=0.275 Sum_probs=115.3
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||+. +.||.++|+ .|++++++.++.+... +.. ..+|.| .+.++.+.+
T Consensus 3 ~iIlAaG~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~~---------------g~~-~v~iv~-~~~~~~~~~ 62 (233)
T cd06425 3 ALILVGGYGTRLRPLTLTVPKPLVEF---CNKPMIEHQIEALAKA---------------GVK-EIILAV-NYRPEDMVP 62 (233)
T ss_pred EEEecCCCccccCccccCCCCccCeE---CCcchHHHHHHHHHHC---------------CCc-EEEEEe-eeCHHHHHH
Confidence 68999999999974 689999999 7999999999987541 111 224555 456788889
Q ss_pred HHhhcC-CCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcc
Q 010950 199 YFEGHK-YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (497)
Q Consensus 199 ~~~~~~-~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~ 277 (497)
++.+.. .+|+ .+.+.. ...|.|.|+.+..... .+ ...-+-+.+.+.|++
T Consensus 63 ~l~~~~~~~~~---~i~~~~---------------------~~~~~G~~~al~~a~~-----~~-~~~~~~~lv~~~D~~ 112 (233)
T cd06425 63 FLKEYEKKLGI---KITFSI---------------------ETEPLGTAGPLALARD-----LL-GDDDEPFFVLNSDVI 112 (233)
T ss_pred HHhcccccCCe---EEEecc---------------------CCCCCccHHHHHHHHH-----Hh-ccCCCCEEEEeCCEe
Confidence 987531 1332 122111 1125687776554332 22 221234677789987
Q ss_pred cccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEE
Q 010950 278 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (497)
Q Consensus 278 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~ 357 (497)
. ...-..++.++..+++++++-+.+...+ .+-|++.....+| .|+++.|-|.... . +..|+++++
T Consensus 113 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~--~v~~~~ekp~~~~---------~--~~~~~Giyi 177 (233)
T cd06425 113 C-DFPLAELLDFHKKHGAEGTILVTKVEDP-SKYGVVVHDENTG--RIERFVEKPKVFV---------G--NKINAGIYI 177 (233)
T ss_pred e-CCCHHHHHHHHHHcCCCEEEEEEEcCCc-cccCeEEEcCCCC--EEEEEEECCCCCC---------C--CEEEEEEEE
Confidence 4 3333568888988999988777765544 4458876542124 6778876543211 1 245899999
Q ss_pred EehHHHHHH
Q 010950 358 FTLDFLNQV 366 (497)
Q Consensus 358 f~l~fL~~~ 366 (497)
|+.+.++.+
T Consensus 178 ~~~~~l~~l 186 (233)
T cd06425 178 LNPSVLDRI 186 (233)
T ss_pred ECHHHHHhc
Confidence 999988654
No 31
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.84 E-value=3.9e-07 Score=98.91 Aligned_cols=177 Identities=20% Similarity=0.197 Sum_probs=108.9
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
++.+|+||||.||||+...||.|+|+ .|++++++.++++.+ .++. .++|.| .+..+.+.+
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi---~gkpli~~~l~~l~~---------------~gi~-~ivvv~-~~~~~~i~~ 66 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPV---AGRPMVAWAVKAARD---------------LGAR-KIVVVT-GHGAEQVEA 66 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEE---CCeeHHHHHHHHHHh---------------CCCC-eEEEEe-CCCHHHHHH
Confidence 67889999999999998889999998 899999999998753 1111 224444 456777888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
+|+. . .+.+..|+ .|.|.|+.+.... +.+ ...-+.++|.+.|+++
T Consensus 67 ~~~~---~-----~i~~v~~~---------------------~~~Gt~~al~~~~-----~~l-~~~~~~~lV~~gD~P~ 111 (481)
T PRK14358 67 ALQG---S-----GVAFARQE---------------------QQLGTGDAFLSGA-----SAL-TEGDADILVLYGDTPL 111 (481)
T ss_pred Hhcc---C-----CcEEecCC---------------------CcCCcHHHHHHHH-----HHh-hCCCCcEEEEeCCeec
Confidence 8752 1 24444332 2557777655432 222 2222347889999986
Q ss_pred ccccCH-HHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEE
Q 010950 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (497)
Q Consensus 279 ~~~~Dp-~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~ 357 (497)
....+. .++..+..+++++++-+.+...+.. -|++... .+| .|.++.|-++...... .-+..|+++++
T Consensus 112 i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~-yG~v~~d-~~g--~v~~~~Ek~~~~~~~~-------~~~~~n~Giyi 180 (481)
T PRK14358 112 LRPDTLRALVADHRAQGSAMTILTGELPDATG-YGRIVRG-ADG--AVERIVEQKDATDAEK-------AIGEFNSGVYV 180 (481)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCC-ceEEEEC-CCC--CEEEEEECCCCChhHh-------hCCeEEEEEEE
Confidence 544433 3566677777777655544444444 4887664 345 3555555443211000 00135899999
Q ss_pred EehH
Q 010950 358 FTLD 361 (497)
Q Consensus 358 f~l~ 361 (497)
|+.+
T Consensus 181 ~~~~ 184 (481)
T PRK14358 181 FDAR 184 (481)
T ss_pred EchH
Confidence 9954
No 32
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=98.83 E-value=5.3e-07 Score=87.23 Aligned_cols=181 Identities=17% Similarity=0.163 Sum_probs=109.4
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHHh
Q 010950 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (497)
Q Consensus 122 vvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~~ 201 (497)
+|+||||.||||+...||.+.|+ .|++++++.++.+.. .++ -..+|.|+.. ++.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v---~gkpli~~~i~~l~~---------------~~i-~~i~iv~~~~-~~~i~~~~~ 60 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVLDAARA---------------LGP-DRIVVVVGHG-AEQVKKALA 60 (229)
T ss_pred CEEEeCCCCccCCCCCChhccee---CCccHHHHHHHHHHh---------------CCC-CeEEEEECCC-HHHHHHHhC
Confidence 48999999999998889999998 899999999888753 121 1335555544 788888876
Q ss_pred hcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcccccc
Q 010950 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 281 (497)
Q Consensus 202 ~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~~~ 281 (497)
+ ++ +.++.|.. +.|.++...... +.+ .++.+++++.+.|+++...
T Consensus 61 ~---~~-----~~~~~~~~---------------------~~g~~~ai~~a~-----~~~-~~~~~~vli~~~D~p~~~~ 105 (229)
T cd02540 61 N---PN-----VEFVLQEE---------------------QLGTGHAVKQAL-----PAL-KDFEGDVLVLYGDVPLITP 105 (229)
T ss_pred C---CC-----cEEEECCC---------------------CCCCHHHHHHHH-----Hhh-ccCCCeEEEEeCCccccCH
Confidence 5 22 34444321 346565444322 222 2246889999999985332
Q ss_pred cCH-HHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEEeh
Q 010950 282 ADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTL 360 (497)
Q Consensus 282 ~Dp-~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f~l 360 (497)
.+- .++-.+.+.++++++-+.+..+|. .-|.+... .+|+ |+++.+-+..... . ......|+++++|+.
T Consensus 106 ~~i~~l~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~-~~~~--v~~~~ek~~~~~~--~-----~~~~~~~~giy~~~~ 174 (229)
T cd02540 106 ETLQRLLEAHREAGADVTVLTAELEDPT-GYGRIIRD-GNGK--VLRIVEEKDATEE--E-----KAIREVNAGIYAFDA 174 (229)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEcCCCC-CccEEEEc-CCCC--EEEEEECCCCChH--H-----HhhceEEeEEEEEEH
Confidence 221 134445555677776666666664 34655443 2453 5555443321000 0 001246889999998
Q ss_pred HHHHHHhh
Q 010950 361 DFLNQVAN 368 (497)
Q Consensus 361 ~fL~~~~~ 368 (497)
+.+.+.++
T Consensus 175 ~~~~~~l~ 182 (229)
T cd02540 175 EFLFEALP 182 (229)
T ss_pred HHHHHHHH
Confidence 87766554
No 33
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.7e-07 Score=98.14 Aligned_cols=179 Identities=22% Similarity=0.357 Sum_probs=127.7
Q ss_pred EEEEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHH
Q 010950 120 LAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (497)
Q Consensus 120 vavvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t 196 (497)
+-+|+||||.||||. .+.||.|+|| .||++++++++.+.+ .+ +--++++..+..+.+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI---~gkPii~~~l~~L~~---------------~G--v~eivi~~~y~~~~i 61 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPI---AGKPLIEYVLEALAA---------------AG--VEEIVLVVGYLGEQI 61 (358)
T ss_pred ceEEEEeCCccccccccccCCCccccee---CCccHHHHHHHHHHH---------------CC--CcEEEEEeccchHHH
Confidence 357899999999996 6789999999 799999999998753 12 334677789999999
Q ss_pred HHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCc
Q 010950 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (497)
Q Consensus 197 ~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN 276 (497)
.++|.+...+|. +|.+..|.. |-|+||.++...+. + +.+-+++.+.|+
T Consensus 62 ~~~~~d~~~~~~---~I~y~~e~~---------------------~lGTag~l~~a~~~-----l---~~~~f~v~~GDv 109 (358)
T COG1208 62 EEYFGDGEGLGV---RITYVVEKE---------------------PLGTAGALKNALDL-----L---GGDDFLVLNGDV 109 (358)
T ss_pred HHHHhcccccCC---ceEEEecCC---------------------cCccHHHHHHHHHh-----c---CCCcEEEEECCe
Confidence 999998756664 466665442 77898888775432 2 228899999999
Q ss_pred ccccccC-HHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceee
Q 010950 277 ALVRVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (497)
Q Consensus 277 ~L~~~~D-p~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~ 355 (497)
+. ..| -.++.++..++....+-.++...+.+ -|++.... ++ -.|.++.|-|.. ..... +..|+++
T Consensus 110 ~~--~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~-~Gvv~~~~-~~-~~v~~f~ekp~~-~~~~~--------~~in~Gi 175 (358)
T COG1208 110 LT--DLDLSELLEFHKKKGALATIALTRVLDPSE-FGVVETDD-GD-GRVVEFREKPGP-EEPPS--------NLINAGI 175 (358)
T ss_pred ee--ccCHHHHHHHHHhccCccEEEEEecCCCCc-CceEEecC-CC-ceEEEEEecCCC-CCCCC--------ceEEeEE
Confidence 83 444 34788888886666666666666633 46666541 22 467888887642 11100 2569999
Q ss_pred EEEehHHHH
Q 010950 356 HMFTLDFLN 364 (497)
Q Consensus 356 ~~f~l~fL~ 364 (497)
++|+-+.++
T Consensus 176 yi~~~~v~~ 184 (358)
T COG1208 176 YIFDPEVFD 184 (358)
T ss_pred EEECHHHhh
Confidence 999999886
No 34
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.81 E-value=1.3e-07 Score=91.41 Aligned_cols=174 Identities=16% Similarity=0.192 Sum_probs=110.5
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||+. +.||.|+|+ .|++++++.++.+.+ .+ +.-+++...+..+.+.+
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi---~g~~li~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~~ 61 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPV---AGKPLIDHALDRLAA---------------AG--IRRIVVNTHHLADQIEA 61 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEccCCHHHHHH
Confidence 58999999999974 689999999 799999999998854 12 33345556788999999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.+ .++|+ +|.+..|. ..+-|.|+.+..... .+ +-++++|.+.|++.
T Consensus 62 ~~~~-~~~~~---~i~~~~~~--------------------~~~~g~~~~l~~~~~-----~~---~~~~~lv~~~D~i~ 109 (221)
T cd06422 62 HLGD-SRFGL---RITISDEP--------------------DELLETGGGIKKALP-----LL---GDEPFLVVNGDILW 109 (221)
T ss_pred HHhc-ccCCc---eEEEecCC--------------------CcccccHHHHHHHHH-----hc---CCCCEEEEeCCeee
Confidence 9987 44554 23332221 024477665443222 12 22789999999974
Q ss_pred ccccCHHHHHHHh--hcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeE
Q 010950 279 VRVADPTFLGYFI--DKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 356 (497)
Q Consensus 279 ~~~~Dp~~lG~~~--~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~ 356 (497)
...--.++-.|. ..++.+++.+++...+... |++... .+| .|.++.+-++ . ...|++++
T Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~v~~d-~~~--~v~~~~~~~~---------~-----~~~~~Giy 170 (221)
T cd06422 110 -DGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGV-GDFSLD-ADG--RLRRGGGGAV---------A-----PFTFTGIQ 170 (221)
T ss_pred -CCCHHHHHHHHHhccCCCceEEEEEEcCCCCCc-ceEEEC-CCC--cEeecccCCC---------C-----ceEEEEEE
Confidence 332233555565 4566666666665444433 776654 244 3555544321 0 24589999
Q ss_pred EEehHHHHHH
Q 010950 357 MFTLDFLNQV 366 (497)
Q Consensus 357 ~f~l~fL~~~ 366 (497)
+|+.+.+..+
T Consensus 171 i~~~~~l~~l 180 (221)
T cd06422 171 ILSPELFAGI 180 (221)
T ss_pred EEcHHHHhhC
Confidence 9998887654
No 35
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=98.78 E-value=2e-07 Score=92.83 Aligned_cols=188 Identities=19% Similarity=0.262 Sum_probs=114.9
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||+. +.||.|+|| .|++++++.++.+.+ . .|.-+++...+..+.+.+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv---~g~pii~~~l~~l~~---------------~--gi~~i~iv~~~~~~~i~~ 61 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEI---GGKPILWHIMKIYSH---------------H--GINDFIICCGYKGYVIKE 61 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEE---CCEEHHHHHHHHHHH---------------C--CCCEEEEEcCCCHHHHHH
Confidence 57899999999964 479999999 899999888877643 1 244455566678899999
Q ss_pred HHhhcCCCCCCCCcEEEE-EcCCcceeecCCc---eeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeC
Q 010950 199 YFEGHKYFGLESDQVTFF-QQGTIPCVSKDGR---FIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f-~Q~~~P~~~~~g~---~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~v 274 (497)
+|.+...+|. ++.+. +++.+.......+ +... ....|.|+||.+..... .. +-+.+++.+.
T Consensus 62 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~gt~~al~~~~~------~i--~~e~flv~~g 126 (254)
T TIGR02623 62 YFANYFLHMS---DVTFHMADNTMEVHHKRVEPWRVTLV----DTGESTQTGGRLKRVRE------YL--DDEAFCFTYG 126 (254)
T ss_pred HHHhhhhccc---CeeEEecccccccccccCCccceeee----ecCCcCCcHHHHHHHHH------hc--CCCeEEEEeC
Confidence 9986433221 22222 2222222111110 0000 11246799887765433 12 2467889999
Q ss_pred CcccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCccccccccee
Q 010950 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (497)
Q Consensus 275 DN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~ 354 (497)
|++. ...--.++-+|...++++++-++. .+. .-|++... ++ .|.++.|-|.. . -...|++
T Consensus 127 D~i~-~~dl~~~~~~h~~~~~d~tl~~~~--~~~-~yG~v~~d--~~--~V~~~~Ekp~~---------~---~~~i~~G 186 (254)
T TIGR02623 127 DGVA-DIDIKALIAFHRKHGKKATVTAVQ--PPG-RFGALDLE--GE--QVTSFQEKPLG---------D---GGWINGG 186 (254)
T ss_pred CeEe-cCCHHHHHHHHHHcCCCEEEEEec--CCC-cccEEEEC--CC--eEEEEEeCCCC---------C---CCeEEEE
Confidence 9973 333334777888888888755443 333 34777653 34 46666664321 0 0246999
Q ss_pred eEEEehHHHH
Q 010950 355 LHMFTLDFLN 364 (497)
Q Consensus 355 ~~~f~l~fL~ 364 (497)
+++|+.+.++
T Consensus 187 iyi~~~~il~ 196 (254)
T TIGR02623 187 FFVLNPSVLD 196 (254)
T ss_pred EEEEcHHHHh
Confidence 9999998773
No 36
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=98.78 E-value=1.9e-07 Score=89.58 Aligned_cols=177 Identities=19% Similarity=0.289 Sum_probs=109.1
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||+||||+. ..||.++|+ .|++++++.++.+.+ .+ +.-+++...+..+.+.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i---~g~pli~~~l~~l~~---------------~g--~~~v~vv~~~~~~~i~~ 60 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPV---AGRPFLEYLLEYLAR---------------QG--ISRIVLSVGYLAEQIEE 60 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEE---CCcchHHHHHHHHHH---------------CC--CCEEEEEcccCHHHHHH
Confidence 48999999999974 579999999 799999999998753 12 22244445567788888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.....+|. .+.+..| ..+.|+++......+ .+ +-+++.+.+.|+++
T Consensus 61 ~~~~~~~~~~---~~~~~~~---------------------~~~~G~~~~l~~a~~-----~~---~~~~~lv~~~D~~~ 108 (223)
T cd06915 61 YFGDGYRGGI---RIYYVIE---------------------PEPLGTGGAIKNALP-----KL---PEDQFLVLNGDTYF 108 (223)
T ss_pred HHcCccccCc---eEEEEEC---------------------CCCCcchHHHHHHHh-----hc---CCCCEEEEECCccc
Confidence 8875332332 2322221 124577654433221 22 24789999999975
Q ss_pred ccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEE
Q 010950 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (497)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f 358 (497)
...--.++-.+.+.+.++++-+.+...+. .-|++... .+| .|+++.+-+... .....|+++++|
T Consensus 109 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d-~~~--~v~~~~ek~~~~-----------~~~~~~~Giy~~ 172 (223)
T cd06915 109 -DVDLLALLAALRASGADATMALRRVPDAS-RYGNVTVD-GDG--RVIAFVEKGPGA-----------APGLINGGVYLL 172 (223)
T ss_pred -CCCHHHHHHHHHhCCCcEEEEEEECCCCC-cceeEEEC-CCC--eEEEEEeCCCCC-----------CCCcEEEEEEEE
Confidence 22212345556667788877776654443 34655432 244 466666533211 012458999999
Q ss_pred ehHHHHHH
Q 010950 359 TLDFLNQV 366 (497)
Q Consensus 359 ~l~fL~~~ 366 (497)
+.++++++
T Consensus 173 ~~~~l~~~ 180 (223)
T cd06915 173 RKEILAEI 180 (223)
T ss_pred CHHHHhhC
Confidence 99998754
No 37
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.76 E-value=1.8e-06 Score=92.98 Aligned_cols=185 Identities=19% Similarity=0.206 Sum_probs=116.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
++..|+||||.||||+...||.|+|+ .|++++++.++++.+ .++ -++++.|+ +..+.+.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi---~g~pli~~~l~~l~~---------------~gi-~~iiiv~~-~~~~~i~~ 62 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPL---AGRPMVSWPVAAARE---------------AGA-GRIVLVVG-HQAEKVRE 62 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceecee---CCccHHHHHHHHHHh---------------cCC-CeEEEEEC-CCHHHHHH
Confidence 56789999999999998899999998 799999999888753 111 13355555 55677888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
+|.+.. .+.+..|.. |.|.|+.+.... +.+ +..-+++++.+.|+++
T Consensus 63 ~~~~~~-------~i~~~~~~~---------------------~~Gt~~al~~a~-----~~l-~~~~~~vlv~~gD~p~ 108 (459)
T PRK14355 63 HFAGDG-------DVSFALQEE---------------------QLGTGHAVACAA-----PAL-DGFSGTVLILCGDVPL 108 (459)
T ss_pred HhccCC-------ceEEEecCC---------------------CCCHHHHHHHHH-----HHh-hccCCcEEEEECCccC
Confidence 886421 344444331 447776554432 222 2224789999999986
Q ss_pred ccccC-HHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEE
Q 010950 279 VRVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (497)
Q Consensus 279 ~~~~D-p~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~ 357 (497)
....| -.++-.+...++++++-+.+..+|.. -|++... .+|+ |+++.|-++..... . .....|+++++
T Consensus 109 ~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~-~g~v~~d-~~g~--v~~~~ek~~~~~~~---~----~~~~~~~Giy~ 177 (459)
T PRK14355 109 LRAETLQGMLAAHRATGAAVTVLTARLENPFG-YGRIVRD-ADGR--VLRIVEEKDATPEE---R----SIREVNSGIYC 177 (459)
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCc-CCEEEEc-CCCC--EEEEEEcCCCChhH---h----hccEEEEEEEE
Confidence 44444 34666676677777766655556644 3665543 2453 55555433211100 0 11245899999
Q ss_pred EehHHHHHHhh
Q 010950 358 FTLDFLNQVAN 368 (497)
Q Consensus 358 f~l~fL~~~~~ 368 (497)
|+.+++.+.+.
T Consensus 178 ~~~~~l~~~l~ 188 (459)
T PRK14355 178 VEAAFLFDAIG 188 (459)
T ss_pred EeHHHHHHHHH
Confidence 99998766554
No 38
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.76 E-value=3.1e-07 Score=99.63 Aligned_cols=187 Identities=17% Similarity=0.167 Sum_probs=113.5
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
.+++|+||||.||||+.+.||.++|+ .||+++++.++++.+. +. -.++|.++ +..+.+.+
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi---~gkpli~~~l~~l~~~---------------g~-~~iivvv~-~~~~~i~~ 63 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTL---AGRSMLGHVLHAAAGL---------------AP-QHLVVVVG-HDRERVAP 63 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceecee---CCccHHHHHHHHHHhc---------------CC-CcEEEEEC-CCHHHHHH
Confidence 56789999999999998889999998 7999999999988541 11 13455555 45677888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
+++.. +. .+.+..|+ .|.|.|+...+.. +.+....-++++|.+.|+++
T Consensus 64 ~~~~~---~~---~~~~~~~~---------------------~~~Gt~~si~~al-----~~l~~~~~~~vlV~~gD~P~ 111 (482)
T PRK14352 64 AVAEL---AP---EVDIAVQD---------------------EQPGTGHAVQCAL-----EALPADFDGTVVVTAGDVPL 111 (482)
T ss_pred Hhhcc---CC---ccEEEeCC---------------------CCCCcHHHHHHHH-----HHhccCCCCeEEEEeCCeec
Confidence 87642 11 23333332 2456666433222 12322235789999999986
Q ss_pred ccccCH-HHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEE
Q 010950 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (497)
Q Consensus 279 ~~~~Dp-~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~ 357 (497)
....+. .++-.+...+.++.+-+.+..+|... |.+... .+|+ |.++-|-+...... ......|++.++
T Consensus 112 ~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~y-g~~~~~-~~g~--V~~~~EKp~~~~~~-------~~~~~~~~Giy~ 180 (482)
T PRK14352 112 LDGETLADLVATHTAEGNAVTVLTTTLDDPTGY-GRILRD-QDGE--VTAIVEQKDATPSQ-------RAIREVNSGVYA 180 (482)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCC-CEEEEC-CCCC--EEEEEECCCCCHHH-------hhcceEEEEEEE
Confidence 443332 24555555666665544444455443 665553 3554 44554433211110 111245899999
Q ss_pred EehHHHHHHhh
Q 010950 358 FTLDFLNQVAN 368 (497)
Q Consensus 358 f~l~fL~~~~~ 368 (497)
|+.+.|.+++.
T Consensus 181 f~~~~l~~~~~ 191 (482)
T PRK14352 181 FDAAVLRSALA 191 (482)
T ss_pred EEHHHHHHHHH
Confidence 99999887764
No 39
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=98.74 E-value=2.7e-07 Score=88.20 Aligned_cols=175 Identities=21% Similarity=0.316 Sum_probs=114.1
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||+ ...||.++|+ .|++++++.++.+.. .++ -..+|.|.. ..+.+.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v---~g~pli~~~l~~l~~---------------~g~-~~i~vv~~~-~~~~i~~ 60 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI---AGKPILEYIIERLAR---------------AGI-DEIILVVGY-LGEQIEE 60 (217)
T ss_pred CEEecCCccccccccccCCCccccEE---CCeeHHHHHHHHHHH---------------CCC-CEEEEEecc-CHHHHHH
Confidence 4789999999997 4679999999 899999999998754 111 123555554 5678888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.+...+|. .|.+..|. .|.|.++.+..... .+ .-+++.|.+.|++.
T Consensus 61 ~~~~~~~~~~---~i~~~~~~---------------------~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~~ 108 (217)
T cd04181 61 YFGDGSKFGV---NIEYVVQE---------------------EPLGTAGAVRNAED-----FL---GDDDFLVVNGDVLT 108 (217)
T ss_pred HHcChhhcCc---eEEEEeCC---------------------CCCccHHHHHHhhh-----hc---CCCCEEEEECCeec
Confidence 8876543443 34443322 14577766655432 22 46789999999974
Q ss_pred ccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEE
Q 010950 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (497)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f 358 (497)
....-.++.++..+++++++-+.+... ...-|++... .+| .|+++.|-++.. . . ...|+++++|
T Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~d-~~~--~v~~~~ek~~~~-------~--~--~~~~~Giy~~ 172 (217)
T cd04181 109 -DLDLSELLRFHREKGADATIAVKEVED-PSRYGVVELD-DDG--RVTRFVEKPTLP-------E--S--NLANAGIYIF 172 (217)
T ss_pred -CcCHHHHHHHHHhcCCCEEEEEEEcCC-CCcceEEEEc-CCC--cEEEEEECCCCC-------C--C--CEEEEEEEEE
Confidence 444444677788888888776665543 3344766553 234 466666644211 0 0 1458999999
Q ss_pred ehHHHH
Q 010950 359 TLDFLN 364 (497)
Q Consensus 359 ~l~fL~ 364 (497)
+.++++
T Consensus 173 ~~~~~~ 178 (217)
T cd04181 173 EPEILD 178 (217)
T ss_pred CHHHHH
Confidence 998874
No 40
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.73 E-value=3.9e-07 Score=87.70 Aligned_cols=172 Identities=19% Similarity=0.364 Sum_probs=108.2
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||+ ...||.++|+ .|++++++.++++.. .+ +.-+++...+..+.+.+
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~---~g~pli~~~l~~l~~---------------~~--~~~iivv~~~~~~~i~~ 60 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKV---GGKPILETIIDRFIA---------------QG--FRNFYISVNYLAEMIED 60 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeE---CCcchHHHHHHHHHH---------------CC--CcEEEEECccCHHHHHH
Confidence 5899999999997 4679999999 899999999998753 12 22233444556778888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.+...+|+ ++.+..|+ .|.|.|+.+..+.. ..-+.++|.+.|++.
T Consensus 61 ~~~~~~~~~~---~i~~~~~~---------------------~~~g~~~~l~~~~~---------~~~~~~lv~~~D~i~ 107 (220)
T cd06426 61 YFGDGSKFGV---NISYVRED---------------------KPLGTAGALSLLPE---------KPTDPFLVMNGDILT 107 (220)
T ss_pred HHCCccccCc---cEEEEECC---------------------CCCcchHHHHHHHh---------hCCCCEEEEcCCEee
Confidence 8876433443 24433322 24577777654432 225778999999753
Q ss_pred ccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEE
Q 010950 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (497)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f 358 (497)
...--.++-.+...+.++++-+.+.. +...-|++... +| .|+++.|-+. .. ...|+++++|
T Consensus 108 -~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~d--~~--~v~~~~ek~~---------~~----~~~~~Giy~~ 168 (220)
T cd06426 108 -NLNYEHLLDFHKENNADATVCVREYE-VQVPYGVVETE--GG--RITSIEEKPT---------HS----FLVNAGIYVL 168 (220)
T ss_pred -ccCHHHHHHHHHhcCCCEEEEEEEcC-CCCcceEEEEC--CC--EEEEEEECCC---------CC----CeEEEEEEEE
Confidence 33323466667777778776655533 33344554432 33 5666655221 11 1347899999
Q ss_pred ehHHHHH
Q 010950 359 TLDFLNQ 365 (497)
Q Consensus 359 ~l~fL~~ 365 (497)
+.++++.
T Consensus 169 ~~~~~~~ 175 (220)
T cd06426 169 EPEVLDL 175 (220)
T ss_pred cHHHHhh
Confidence 9988754
No 41
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.73 E-value=2.4e-07 Score=99.37 Aligned_cols=214 Identities=17% Similarity=0.257 Sum_probs=126.1
Q ss_pred CCEEEEEecCCCccccC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCch
Q 010950 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG---~~~PKg~~~i~l~sgk-sllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~ 193 (497)
.++.+|+||||.||||. ...||.|+|+ .|+ +++++.++.+.. .+ |.-+++...+..
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv---~g~~plId~~L~~l~~---------------~G--i~~i~iv~~~~~ 61 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPI---GGNYRLIDIPMSNCIN---------------SG--INKIYVLTQFNS 61 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEe---CCcceEehHHHHHHHh---------------CC--CCEEEEEeccCH
Confidence 36889999999999997 6889999998 776 999999988753 12 222444456788
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEe
Q 010950 194 DATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (497)
Q Consensus 194 ~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~ 273 (497)
+.+.++|++...|+.... +.++.+..+.. .+. ..-...|.|+||.+..... .+++...++-+++++.+
T Consensus 62 ~~i~~~l~~~~~~~~~~~----~~~~~~~i~~~-----~q~-~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~ 129 (436)
T PLN02241 62 ASLNRHLSRAYNFGNGGN----FGDGFVEVLAA-----TQT-PGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILS 129 (436)
T ss_pred HHHHHHHhccCCCCCCcc----cCCCCEEEcCC-----ccc-CCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEec
Confidence 999999986433442210 01110000000 000 0001247899988765432 22222112358999999
Q ss_pred CCcccccccCHHHHHHHhhcCCcEEEEEeec--CCCCCccceEEEecCCCCeEEEEeccCChhhhh---hc-------cc
Q 010950 274 VDNALVRVADPTFLGYFIDKGVSAGAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLAS---AI-------NQ 341 (497)
Q Consensus 274 vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k--~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~---~~-------~~ 341 (497)
.|++ ....--.++-+|.++++++++-+.+. ..+ +.-|++... .++ +|+++.|.|..... +. ++
T Consensus 130 gD~v-~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~-~~ygvv~~d-~~~--~v~~~~Ekp~~~~~~~~~~~~~~~~~~~ 204 (436)
T PLN02241 130 GDHL-YRMDYMDFVQKHRESGADITIACLPVDESRA-SDFGLMKID-DTG--RIIEFSEKPKGDELKAMQVDTTVLGLSP 204 (436)
T ss_pred CCeE-EccCHHHHHHHHHHcCCCEEEEEEecchhhc-CcceEEEEC-CCC--CEEEEEECCCCccccccccccccccccc
Confidence 9997 34333357888888888876544332 233 344887663 244 57777776642110 00 00
Q ss_pred cCCcccccccceeeEEEehHHHHHHhh
Q 010950 342 ETGRLRFCWSNVCLHMFTLDFLNQVAN 368 (497)
Q Consensus 342 ~~g~~~f~~gNi~~~~f~l~fL~~~~~ 368 (497)
+.-.......|+++++|+.+.|..+++
T Consensus 205 ~~~~~~~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 205 EEAKEKPYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred ccccccceEEEeEEEEEEHHHHHHHHH
Confidence 000001135699999999999977764
No 42
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=98.72 E-value=4.1e-07 Score=91.68 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=118.3
Q ss_pred EEEEecCCCccccC----CCCCCccccccCCCC-CChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHH
Q 010950 121 AVLLLSGGQGTRLG----SSDPKGCVNIGLPSG-KSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (497)
Q Consensus 121 avvlLAGG~GTRLG----~~~PKg~~~i~l~sg-ksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (497)
-+|+||||.||||. ...||.++|+ .| +|++|+.++++..+. ++ -.++|.|+....+.
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l---~g~~~li~~~l~~l~~~~--------------~~-~~i~vvt~~~~~~~ 63 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKL---FGDKSLLQQTLDRLKGLV--------------PP-DRILVVTNEEYRFL 63 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEc---CCCCcHHHHHHHHHhcCC--------------CC-CcEEEEechHHHHH
Confidence 46899999999995 5689999887 56 999999999875310 11 14588888766777
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHH-cCceEEEEEeC
Q 010950 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT-RGIKYIDCYGV 274 (497)
Q Consensus 196 t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~-~G~~yi~v~~v 274 (497)
+.+++++ .+ ..+.+..|+. +.|+|+....... .+.+ .+-+++.|.+.
T Consensus 64 v~~~l~~---~~---~~~~ii~ep~---------------------~~gTa~ai~~a~~-----~~~~~~~~~~vlVl~~ 111 (274)
T cd02509 64 VREQLPE---GL---PEENIILEPE---------------------GRNTAPAIALAAL-----YLAKRDPDAVLLVLPS 111 (274)
T ss_pred HHHHHhh---cC---CCceEEECCC---------------------CCCcHHHHHHHHH-----HHHhcCCCCeEEEecc
Confidence 8888865 11 1233443321 4477775544221 1222 24578999999
Q ss_pred CcccccccCH-HHHHHH---hhcCCcEEEEEeecCCCCCccceEEEecCC--CCeEEEEeccCChhhhhhccccCCcccc
Q 010950 275 DNALVRVADP-TFLGYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGKG--GPLTVVEYSELDPSLASAINQETGRLRF 348 (497)
Q Consensus 275 DN~L~~~~Dp-~~lG~~---~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~--g~~~vvEYsel~~~~~~~~~~~~g~~~f 348 (497)
|.++....+- ..+-.+ ...+..+++-+.+. .|...-|.|...... +...|..+.|-|+.......-+.|. |
T Consensus 112 D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~-~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~--~ 188 (274)
T cd02509 112 DHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT-RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGN--Y 188 (274)
T ss_pred hhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec-CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCC--e
Confidence 9985311111 122222 22566676666664 455555887664211 1236777777776422111101122 1
Q ss_pred cccceeeEEEehHHHHHHhhcc
Q 010950 349 CWSNVCLHMFTLDFLNQVANGL 370 (497)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~~~ 370 (497)
.-|.++++|+.+.+.+.++.+
T Consensus 189 -~wNsGiyi~~~~~l~~~l~~~ 209 (274)
T cd02509 189 -LWNSGIFLFRAKTFLEELKKH 209 (274)
T ss_pred -EEECceeeeeHHHHHHHHHHH
Confidence 349999999999888877643
No 43
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.68 E-value=7.8e-07 Score=92.44 Aligned_cols=178 Identities=22% Similarity=0.285 Sum_probs=115.2
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||+ ...||.++|+ .|++++++.++.+.+ .+. -.++++|+....+.+.+
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv---~g~pli~~~l~~l~~---------------~gi-~~i~vv~~~~~~~~i~~ 62 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPV---ANKPILQYAIEDLAE---------------AGI-TDIGIVVGPVTGEEIKE 62 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEE---CCEeHHHHHHHHHHH---------------CCC-CEEEEEeCCCCHHHHHH
Confidence 5899999999997 4789999999 799999999988753 121 13467777768899999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.+...|++ ++.+..|. .|.|.++.+.+... .+ . .+-+++.+.|+++
T Consensus 63 ~~~~~~~~~~---~~~~~~~~---------------------~~~G~~~al~~a~~-----~l-~--~~~~li~~gD~~~ 110 (353)
T TIGR01208 63 IVGEGERFGA---KITYIVQG---------------------EPLGLAHAVYTARD-----FL-G--DDDFVVYLGDNLI 110 (353)
T ss_pred HHhcccccCc---eEEEEECC---------------------CCCCHHHHHHHHHH-----hc-C--CCCEEEEECCeec
Confidence 9987555664 34444432 25688776665332 22 1 2346677889986
Q ss_pred ccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEE
Q 010950 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (497)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f 358 (497)
...--.++-.|..+++++++-+.+..+|... |++... .++ .|.++.|-|.... . ...|+++++|
T Consensus 111 -~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~-g~~~~~-~~~--~v~~~~ekp~~~~---------~--~~~~~Giy~~ 174 (353)
T TIGR01208 111 -QDGISRFVKSFEEKDYDALILLTKVRDPTAF-GVAVLE-DGK--RILKLVEKPKEPP---------S--NLAVVGLYMF 174 (353)
T ss_pred -CccHHHHHHHHHhcCCCcEEEEEECCChhhC-eEEEEc-CCC--cEEEEEECCCCCC---------c--cceEEEEEEE
Confidence 3322347777888888877666665555443 665553 233 4555554432110 0 2458999999
Q ss_pred ehHHHHHH
Q 010950 359 TLDFLNQV 366 (497)
Q Consensus 359 ~l~fL~~~ 366 (497)
+..+++.+
T Consensus 175 ~~~l~~~l 182 (353)
T TIGR01208 175 RPLIFEAI 182 (353)
T ss_pred CHHHHHHH
Confidence 98666543
No 44
>PLN02917 CMP-KDO synthetase
Probab=98.68 E-value=6.8e-07 Score=91.06 Aligned_cols=222 Identities=14% Similarity=0.142 Sum_probs=123.3
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
.++.+|++|+|.++||+ +|-++++ .||+++++.++++... .. +..++.. ..++.+.
T Consensus 46 ~~i~aIIpA~G~SsR~~---~K~L~~i---~GkPLL~~vi~~a~~~--------------~~--~~~VVV~--~~~e~I~ 101 (293)
T PLN02917 46 SRVVGIIPARFASSRFE---GKPLVHI---LGKPMIQRTWERAKLA--------------TT--LDHIVVA--TDDERIA 101 (293)
T ss_pred CcEEEEEecCCCCCCCC---CCCeeeE---CCEEHHHHHHHHHHcC--------------CC--CCEEEEE--CChHHHH
Confidence 37889999999999996 5999998 8999999999987531 11 2223333 3467888
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcc
Q 010950 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (497)
Q Consensus 198 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~ 277 (497)
+++.+ +|. .+..|.. ..+.|.|.+..++. .+ ....+++.+.+.|.|
T Consensus 102 ~~~~~---~~v-----~vi~~~~-------------------~~~~GT~~~~~a~~------~l-~~~~d~Vlil~gD~P 147 (293)
T PLN02917 102 ECCRG---FGA-----DVIMTSE-------------------SCRNGTERCNEALK------KL-EKKYDIVVNIQGDEP 147 (293)
T ss_pred HHHHH---cCC-----EEEeCCc-------------------ccCCchHHHHHHHH------hc-cCCCCEEEEecCCcC
Confidence 88864 232 2232221 12557777755432 23 234679999999999
Q ss_pred cccccCHH-HHHHHhhcCCcE--EEEEe--ecCCCCCccceEEEecCCCCeEEEEec-c-CChhhhhhccccCCcccccc
Q 010950 278 LVRVADPT-FLGYFIDKGVSA--GAKVV--RKAYPQEKVGVFVRRGKGGPLTVVEYS-E-LDPSLASAINQETGRLRFCW 350 (497)
Q Consensus 278 L~~~~Dp~-~lG~~~~~~~~~--~~kvv--~k~~p~e~vGvi~~~~~~g~~~vvEYs-e-l~~~~~~~~~~~~g~~~f~~ 350 (497)
|...-+-. ++-.+. .+.++ ++-+. ...+|...+.++|..+++|+ +++++ . ++.+ ++. ++...... .
T Consensus 148 lI~~~tI~~li~~~~-~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~--alyfsr~~Ipe~-kd~-~~~~~~i~--~ 220 (293)
T PLN02917 148 LIEPEIIDGVVKALQ-AAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGY--AIYFSRGLIPYN-KSG-KVNPQFPY--L 220 (293)
T ss_pred CCCHHHHHHHHHHHH-hcCCceEEEEeeecCHHHhcCCCceEEEECCCCe--EEEeecCcCCcC-CCc-ccccccce--E
Confidence 75443322 223232 33333 22222 33456666666544433563 23333 2 2211 111 00011112 4
Q ss_pred cceeeEEEehHHHHHHhhccccCccceeeecccCccCCCcccchhhhhHhhcCcCCC--ceeEEEEecCcccccccc
Q 010950 351 SNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTVGFKLEQFIFDAFPYAP--STALFEVLREEEFAPVKN 425 (497)
Q Consensus 351 gNi~~~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~~~~~~klE~fifD~~~~~~--~~~~~~V~R~~eFsPvKn 425 (497)
.|++++.|+.++|..+ .. ++ ++..+-|.++.|+.-+.+ ++.++.++ +++..|.+
T Consensus 221 ~n~Giy~f~~~~L~~l-~~----l~--------------~~n~e~e~yLtdl~~le~G~~i~~~~~~--~~~~GVnt 276 (293)
T PLN02917 221 LHLGIQSYDAKFLKIY-PE----LP--------------PTPLQLEEDLEQLKVLENGYKMKVIKVD--HEAHGVDT 276 (293)
T ss_pred EEEEEEEeCHHHHHHH-Hc----CC--------------CCcccchhccHHHHHHhCCCceEEEEeC--CCCCCCCC
Confidence 5999999999999844 32 21 123455666666663333 34445444 35555533
No 45
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.67 E-value=7e-07 Score=95.47 Aligned_cols=200 Identities=13% Similarity=0.196 Sum_probs=122.2
Q ss_pred CEEEEEecCCCccccCC---CCCCccccccCCCCCC-hHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchH
Q 010950 119 KLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKS-LFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~---~~PKg~~~i~l~sgks-llq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~ 194 (497)
++.+|+||||.||||.. ..||.|+|+ .|++ ++++.++.+.+ .++. ..+|.| .+..+
T Consensus 15 ~~~aVILAaG~GtRl~pLT~~~PK~llpv---~gkp~lI~~~l~~l~~---------------~Gi~-~i~vv~-~~~~~ 74 (425)
T PRK00725 15 DTLALILAGGRGSRLKELTDKRAKPAVYF---GGKFRIIDFALSNCIN---------------SGIR-RIGVLT-QYKAH 74 (425)
T ss_pred ceEEEEECCCCCCcchhhhCCCcceeEEE---CCEEEEhHHHHHHHHH---------------CCCC-eEEEEe-cCCHH
Confidence 78999999999999985 789999999 8996 99999998753 1221 224555 57889
Q ss_pred HHHHHHhhcCCCCCCC----CcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEE
Q 010950 195 ATRKYFEGHKYFGLES----DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYID 270 (497)
Q Consensus 195 ~t~~~~~~~~~FGl~~----~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~ 270 (497)
.+.++|.+. +++.+ ..+.++.+.. .......|-|+|+.+..... .+....-++++
T Consensus 75 ~i~~~~~~~--~~~~~~~~~~~i~i~~~~~--------------~~~~e~~~lGTa~al~~a~~-----~l~~~~~d~~l 133 (425)
T PRK00725 75 SLIRHIQRG--WSFFREELGEFVDLLPAQQ--------------RVDEENWYRGTADAVYQNLD-----IIRRYDPKYVV 133 (425)
T ss_pred HHHHHHHhh--hcccccCCCCeEEEeCCcc--------------cCCCCccccCcHHHHHHHHH-----HHHhcCCCEEE
Confidence 999999753 33211 1122111110 00012236799887665432 33333347899
Q ss_pred EEeCCcccccccCHHHHHHHhhcCCcEEEEEeec--CCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccc
Q 010950 271 CYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRF 348 (497)
Q Consensus 271 v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k--~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f 348 (497)
|.+.|++. ...--.++-+|..+++++.+-+.+. ..+... |++... .+| .|.++.|-|........ ....
T Consensus 134 Vl~gD~l~-~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~y-G~v~~d-~~~--~V~~~~EKp~~~~~~~~----~~~~ 204 (425)
T PRK00725 134 ILAGDHIY-KMDYSRMLADHVESGADCTVACLEVPREEASAF-GVMAVD-END--RITAFVEKPANPPAMPG----DPDK 204 (425)
T ss_pred EecCCeEe-ccCHHHHHHHHHHcCCCEEEEEEecchhhcccc-eEEEEC-CCC--CEEEEEECCCCcccccc----Cccc
Confidence 99999964 3332347788888888876554332 334443 777664 234 35566664422110000 0011
Q ss_pred cccceeeEEEehHHHHHHhh
Q 010950 349 CWSNVCLHMFTLDFLNQVAN 368 (497)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~ 368 (497)
+..|+++++|+.++|.+++.
T Consensus 205 ~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 205 SLASMGIYVFNADYLYELLE 224 (425)
T ss_pred eEEEeeEEEEeHHHHHHHHH
Confidence 35699999999999877664
No 46
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.66 E-value=7.6e-07 Score=95.34 Aligned_cols=202 Identities=18% Similarity=0.248 Sum_probs=120.1
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchH
Q 010950 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (497)
Q Consensus 119 kvavvlLAGG~GTRLG---~~~PKg~~~i~l~sgk-sllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~ 194 (497)
++.+|+||||.||||. .+.||.|+|+ .|+ +++++.++++.. .++. .++|.| .+..+
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi---~gk~plI~~~L~~l~~---------------~Gi~-~vivv~-~~~~~ 62 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPL---AGKYRLIDIPISNCIN---------------SGIN-KIYVLT-QFNSA 62 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEE---CCeeEEeHHHHHHHHH---------------CCCC-EEEEEe-cCCHH
Confidence 6789999999999997 4889999999 898 999999998753 1221 224544 46889
Q ss_pred HHHHHHhhcCCCCCCCCc-EEEEE--cCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEE
Q 010950 195 ATRKYFEGHKYFGLESDQ-VTFFQ--QGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDC 271 (497)
Q Consensus 195 ~t~~~~~~~~~FGl~~~~-v~~f~--Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v 271 (497)
.++++|.+..+++..... +.+.. |.. .-...+.|+||....... .+....-++++|
T Consensus 63 ~i~~~l~~~~~~~~~~~g~~~i~~~~~~~----------------~~~~~~lGTa~al~~a~~-----~l~~~~~~~~lV 121 (429)
T PRK02862 63 SLNRHISQTYNFDGFSGGFVEVLAAQQTP----------------ENPSWFQGTADAVRKYLW-----HFQEWDVDEYLI 121 (429)
T ss_pred HHHHHHhcCcCccccCCCEEEEeCCcccC----------------CCCccccCcHHHHHHHHH-----HHHhcCCCEEEE
Confidence 999999864323211001 11110 100 000112588887765432 233333468999
Q ss_pred EeCCcccccccCHHHHHHHhhcCCcEEEEEeec--CCCCCccceEEEecCCCCeEEEEeccCChhhh-hh--c-------
Q 010950 272 YGVDNALVRVADPTFLGYFIDKGVSAGAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLA-SA--I------- 339 (497)
Q Consensus 272 ~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k--~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~-~~--~------- 339 (497)
.+.|++. ...--.++-+|...++++++-+.+. ..+... |++... .+| .|.++.|-|.... +. .
T Consensus 122 l~gD~l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~y-G~i~~d-~~g--~V~~~~Ekp~~~~~~~~~~~~s~~~~ 196 (429)
T PRK02862 122 LSGDQLY-RMDYRLFVQHHRETGADITLAVLPVDEKDASGF-GLMKTD-DDG--RITEFSEKPKGDELKAMAVDTSRLGL 196 (429)
T ss_pred ecCCEEE-eCCHHHHHHHHHHcCCCEEEEEEecChhhcccc-eEEEEC-CCC--cEEEEEECCCccccchhccccccccc
Confidence 9999963 3222347788888888876655332 233333 776654 234 4555555553210 00 0
Q ss_pred c--ccCCcccccccceeeEEEehHHHHHHhh
Q 010950 340 N--QETGRLRFCWSNVCLHMFTLDFLNQVAN 368 (497)
Q Consensus 340 ~--~~~g~~~f~~gNi~~~~f~l~fL~~~~~ 368 (497)
+ +.... . ...|+++++|+.++|.+++.
T Consensus 197 ~~~~~~~~-~-~~~n~Giyi~~~~vl~~~l~ 225 (429)
T PRK02862 197 SPEEAKGK-P-YLASMGIYVFSRDVLFDLLN 225 (429)
T ss_pred ccccCCCC-c-eEEEEEEEEEcHHHHHHHHH
Confidence 0 00001 1 24589999999999987764
No 47
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.64 E-value=1.6e-06 Score=87.78 Aligned_cols=187 Identities=19% Similarity=0.233 Sum_probs=134.4
Q ss_pred CCEEEEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchH
Q 010950 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~ 194 (497)
..|+.|+|.||-||||- ...||.+.|+ ..|.++.++++.+.. .++. .+|+.|+..-..
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpf---gn~pmI~hqieal~n---------------sGi~-~I~la~~y~s~s 68 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPF---GNKPMILHQIEALIN---------------SGIT-KIVLATQYNSES 68 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCccccc---CcchhhHHHHHHHHh---------------CCCc-EEEEEEecCcHH
Confidence 37889999999999985 7889999888 489999999987753 2332 447777776665
Q ss_pred HHHHHHhhcC-CCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEe
Q 010950 195 ATRKYFEGHK-YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (497)
Q Consensus 195 ~t~~~~~~~~-~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~ 273 (497)
-.+.+.+.+. .|| ..|. |.|.+ -|.|..|-..+.++. |.... +- -++|.|
T Consensus 69 l~~~~~k~y~~~lg---Vei~-~s~et--------------------eplgtaGpl~laR~~--L~~~~--~~-~ffVLn 119 (371)
T KOG1322|consen 69 LNRHLSKAYGKELG---VEIL-ASTET--------------------EPLGTAGPLALARDF--LWVFE--DA-PFFVLN 119 (371)
T ss_pred HHHHHHHHhhhccc---eEEE-EEecc--------------------CCCcccchHHHHHHH--hhhcC--CC-cEEEec
Confidence 6666666542 355 2344 33332 177888887775542 21111 11 689999
Q ss_pred CCcccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccce
Q 010950 274 VDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNV 353 (497)
Q Consensus 274 vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi 353 (497)
.|=+ ++..--.|+-+|..++++.+..|++-..|... |+++-+. +.-+|..++|-|++... +..|.
T Consensus 120 sDvi-~~~p~~~~vqfH~~~gae~TI~~t~vdepSky-Gvv~~d~--~~grV~~F~EKPkd~vs-----------nkina 184 (371)
T KOG1322|consen 120 SDVI-CRMPYKEMVQFHRAHGAEITIVVTKVDEPSKY-GVVVIDE--DTGRVIRFVEKPKDLVS-----------NKINA 184 (371)
T ss_pred CCee-ecCCHHHHHHHHHhcCCceEEEEEeccCcccc-ceEEEec--CCCceeEehhCchhhhh-----------ccccc
Confidence 9987 78877889999999999999888877666555 8877652 23368899999986542 24589
Q ss_pred eeEEEehHHHHHHh
Q 010950 354 CLHMFTLDFLNQVA 367 (497)
Q Consensus 354 ~~~~f~l~fL~~~~ 367 (497)
++++|+.+.|.++.
T Consensus 185 GiYi~~~~vL~ri~ 198 (371)
T KOG1322|consen 185 GIYILNPEVLDRIL 198 (371)
T ss_pred eEEEECHHHHhHhh
Confidence 99999999999886
No 48
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=98.62 E-value=7.4e-07 Score=88.39 Aligned_cols=200 Identities=18% Similarity=0.165 Sum_probs=109.5
Q ss_pred EEEEecCCCccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 121 AVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 121 avvlLAGG~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
.+|+||||.||||+. ..||.++|+ .|++++++.++.+.. .++. ..+|+|. +..+.+.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi---~g~pli~~~l~~l~~---------------~gi~-~v~iv~~-~~~~~i~ 61 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYVVEEAVE---------------AGIE-DILIVTG-RGKRAIE 61 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEE---CCEEHHHHHHHHHHh---------------CCCC-EEEEEeC-CcHHHHH
Confidence 369999999999974 789999999 799999999987743 1221 2355555 5577899
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCcceeec----C--CceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEE
Q 010950 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSK----D--GRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDC 271 (497)
Q Consensus 198 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~----~--g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v 271 (497)
++|.+...++.. + -.++.+..++. . -.+... ....|.|.|+.+..... .+ +-+.+.|
T Consensus 62 ~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~G~~~al~~~~~-----~~---~~~~~lv 124 (260)
T TIGR01099 62 DHFDTSYELEHQ---L--EKRGKEELLKEVRSISPLATIFYV----RQKEQKGLGHAVLCAEP-----FV---GDEPFAV 124 (260)
T ss_pred HHhcccHHHHHH---H--HhhhhHHHHHHhhhccccceEEEE----ecCCCCCHHHHHHHHHH-----hh---CCCCEEE
Confidence 998742111000 0 00000000000 0 000000 01236688886654432 22 3466888
Q ss_pred EeCCcccccc--cCHHHHHHHhhcCCcEE-EEEeecCCCCCccceEEEecC-CCCeEEEEeccCChhhhhhccccCCccc
Q 010950 272 YGVDNALVRV--ADPTFLGYFIDKGVSAG-AKVVRKAYPQEKVGVFVRRGK-GGPLTVVEYSELDPSLASAINQETGRLR 347 (497)
Q Consensus 272 ~~vDN~L~~~--~Dp~~lG~~~~~~~~~~-~kvv~k~~p~e~vGvi~~~~~-~g~~~vvEYsel~~~~~~~~~~~~g~~~ 347 (497)
.+.|+++... .--.++-+|.++++++. ...++...+ ..-|++..... ++.-.|+++.|-|.... . ..
T Consensus 125 ~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~-~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~----~-~~--- 195 (260)
T TIGR01099 125 ILGDDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKEEV-SKYGVIDGEGVEEGLYEIKDMVEKPKPEE----A-PS--- 195 (260)
T ss_pred EeccceecCCcHHHHHHHHHHHHhCCCEEEEEECChhhc-ccCceEEeccccCCceeEEEEEECCCCCC----C-CC---
Confidence 8999986432 12346777777788752 222222233 33477655310 11125666666552100 0 00
Q ss_pred ccccceeeEEEehHHHHHHh
Q 010950 348 FCWSNVCLHMFTLDFLNQVA 367 (497)
Q Consensus 348 f~~gNi~~~~f~l~fL~~~~ 367 (497)
...|+++++|+.+.+..+.
T Consensus 196 -~~~~~Giyi~~~~~~~~l~ 214 (260)
T TIGR01099 196 -NLAIVGRYVLTPDIFDLLE 214 (260)
T ss_pred -ceEEEEEEECCHHHHHHHH
Confidence 2468999999998776653
No 49
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.60 E-value=1.4e-06 Score=93.23 Aligned_cols=185 Identities=16% Similarity=0.145 Sum_probs=109.7
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
.++.+|+||||.||||+...||.++|+ .||+++++.++.+.+ .++. ..+|.++ +.++.+.
T Consensus 4 ~~~~aiILAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~---------------~gi~-~ivvv~~-~~~~~i~ 63 (446)
T PRK14353 4 RTCLAIILAAGEGTRMKSSLPKVLHPV---AGRPMLAHVLAAAAS---------------LGPS-RVAVVVG-PGAEAVA 63 (446)
T ss_pred ccceEEEEcCCCCCccCCCCCcccCEE---CCchHHHHHHHHHHh---------------CCCC-cEEEEEC-CCHHHHH
Confidence 367899999999999998889999998 899999999998753 1211 2245444 4667788
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcc
Q 010950 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (497)
Q Consensus 198 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~ 277 (497)
+++.+ ++. .+.++.|. .|.|.++...+-. +.+ ..+.+++++.+.|.+
T Consensus 64 ~~~~~---~~~---~~~~~~~~---------------------~~~G~~~sl~~a~-----~~l-~~~~~~~lv~~~D~P 110 (446)
T PRK14353 64 AAAAK---IAP---DAEIFVQK---------------------ERLGTAHAVLAAR-----EAL-AGGYGDVLVLYGDTP 110 (446)
T ss_pred HHhhc---cCC---CceEEEcC---------------------CCCCcHHHHHHHH-----HHH-hccCCCEEEEeCCcc
Confidence 88754 221 23333332 1446655444322 222 234578899999998
Q ss_pred cccccCHH-HHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeE
Q 010950 278 LVRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 356 (497)
Q Consensus 278 L~~~~Dp~-~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~ 356 (497)
+....+.. ++- +...+.++.+-+.+...+ .+.|++... +| .|+++.|-++..... ... ...|++++
T Consensus 111 ~i~~~~l~~l~~-~~~~~~~~~i~~~~~~~~-~~~g~~~~~--~g--~v~~~~ek~~~~~~~-----~~~--~~~~~Giy 177 (446)
T PRK14353 111 LITAETLARLRE-RLADGADVVVLGFRAADP-TGYGRLIVK--GG--RLVAIVEEKDASDEE-----RAI--TLCNSGVM 177 (446)
T ss_pred cCCHHHHHHHHH-hHhcCCcEEEEEEEeCCC-CcceEEEEC--CC--eEEEEEECCCCChHH-----hhc--eEEEEEEE
Confidence 64332221 222 234556666655555444 344665542 45 466666544221110 001 24588999
Q ss_pred EEehHHHHHHhh
Q 010950 357 MFTLDFLNQVAN 368 (497)
Q Consensus 357 ~f~l~fL~~~~~ 368 (497)
+|+.+.+.++++
T Consensus 178 ~~~~~~l~~~l~ 189 (446)
T PRK14353 178 AADGADALALLD 189 (446)
T ss_pred EEEHHHHHHHHH
Confidence 999887766554
No 50
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.59 E-value=8.6e-07 Score=87.05 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=108.7
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
++++|+||||.++||+ +|.++|+ .|++++++.++.+.+. + +.-+++.+. ++.+.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i---~Gkpll~~~l~~l~~~---------------~--i~~ivvv~~--~~~i~~ 56 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADI---GGKPMIVRVYERASKA---------------G--ADRVVVATD--DERIAD 56 (245)
T ss_pred ceEEEEecCCCCCCCC---CCccccc---CCcCHHHHHHHHHHhc---------------C--CCeEEEECC--cHHHHH
Confidence 5789999999999995 7999998 8999999999987541 1 222333332 577888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.+ +|. .+.+..|. .+.|.+++..++.. +...+-+++++.+.|+|+
T Consensus 57 ~~~~---~~~---~v~~~~~~---------------------~~~gt~~~~~~~~~------~~~~~~~~vlv~~~D~Pl 103 (245)
T PRK05450 57 AVEA---FGG---EVVMTSPD---------------------HPSGTDRIAEAAAK------LGLADDDIVVNVQGDEPL 103 (245)
T ss_pred HHHH---cCC---EEEECCCc---------------------CCCchHHHHHHHHh------cCCCCCCEEEEecCCCCC
Confidence 8864 342 23221111 14466665544322 211235789999999987
Q ss_pred ccccCH-HHHHHHhhcCCcEEEEEeecCC-----CCCccceEEEecCCCCeEEEEeccCCh-hhhhhccccCCccccccc
Q 010950 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAY-----PQEKVGVFVRRGKGGPLTVVEYSELDP-SLASAINQETGRLRFCWS 351 (497)
Q Consensus 279 ~~~~Dp-~~lG~~~~~~~~~~~kvv~k~~-----p~e~vGvi~~~~~~g~~~vvEYsel~~-~~~~~~~~~~g~~~f~~g 351 (497)
....+- .++-.+..++.++.+-+++..+ ..+.+|++ .. .+| .|+++.+.+. +.....+ .....-...
T Consensus 104 i~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d-~~g--~v~~~~e~~~~~~~~~~~--~~~~~~~~~ 177 (245)
T PRK05450 104 IPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LD-ADG--RALYFSRAPIPYGRDAFA--DSAPTPVYR 177 (245)
T ss_pred CCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eC-CCC--cEEEecCCCCCCCCCccc--cccCccccE
Confidence 533333 2444444455666655554421 22335655 33 345 4566676552 1110000 000011356
Q ss_pred ceeeEEEehHHHHHHhh
Q 010950 352 NVCLHMFTLDFLNQVAN 368 (497)
Q Consensus 352 Ni~~~~f~l~fL~~~~~ 368 (497)
|++++.|+.+.++.+.+
T Consensus 178 ~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 178 HIGIYAYRRGFLRRFVS 194 (245)
T ss_pred EEEEEecCHHHHHHHHh
Confidence 99999999999988764
No 51
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=98.57 E-value=1.8e-06 Score=88.28 Aligned_cols=201 Identities=16% Similarity=0.139 Sum_probs=110.7
Q ss_pred EEEEEecCCCccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHH
Q 010950 120 LAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (497)
Q Consensus 120 vavvlLAGG~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t 196 (497)
..+|+||||.||||.. ..||.++|+ .|++++++.++.+.+ .+ |--++....+..+.+
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv---~g~pii~~~l~~l~~---------------~g--i~~i~vv~~~~~~~i 68 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIA---------------AG--ITEIVLVTHSSKNSI 68 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEeCCCHHHH
Confidence 4579999999999974 689999999 899999999998754 11 222344555678889
Q ss_pred HHHHhhcCCCC--CCCC-cEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEe
Q 010950 197 RKYFEGHKYFG--LESD-QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (497)
Q Consensus 197 ~~~~~~~~~FG--l~~~-~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~ 273 (497)
.++|.....++ +++. +..+ .++--... ..|..+. ......|.|.|+.+..-.. +. +-+-++|.+
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~-~~e~~~i~-~~~~~i~---~~~q~~~~Gtg~Av~~a~~------~~--~~~~~lVl~ 135 (302)
T PRK13389 69 ENHFDTSFELEAMLEKRVKRQL-LDEVQSIC-PPHVTIM---QVRQGLAKGLGHAVLCAHP------VV--GDEPVAVIL 135 (302)
T ss_pred HHHHccchhhhhhhhhhhhhHH-HHhhhhcc-ccCceEE---EeecCCCCChHHHHHHHHH------Hc--CCCCEEEEe
Confidence 99997432222 1100 0000 00000000 0000000 0001246788887665332 22 235578889
Q ss_pred CCcccc------cccC-HHHHHHHhhcCCcEEEEEeecCCCCCccceEEEec---CCC-CeEEEEeccCChhhhhhcccc
Q 010950 274 VDNALV------RVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG---KGG-PLTVVEYSELDPSLASAINQE 342 (497)
Q Consensus 274 vDN~L~------~~~D-p~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~---~~g-~~~vvEYsel~~~~~~~~~~~ 342 (497)
.||++- ...| -.++-+|.+.+++. +-+.+...+... |++.... .+| .-.|+++-|-|....
T Consensus 136 gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~t-l~~~~~~~~~~y-Gvv~~~~~~~~~~~~~~V~~~~EKp~~~~------ 207 (302)
T PRK13389 136 PDVILDEYESDLSQDNLAEMIRRFDETGHSQ-IMVEPVADVTAY-GVVDCKGVELAPGESVPMVGVVEKPKADV------ 207 (302)
T ss_pred CcceecccccccccccHHHHHHHHHhcCCCE-EEEEEcccCCcc-eEEEecCcccccCCcceEEEEEECCCCCC------
Confidence 999852 1233 34777777777763 333333344444 8776531 011 124666666553211
Q ss_pred CCcccccccceeeEEEehHHHH
Q 010950 343 TGRLRFCWSNVCLHMFTLDFLN 364 (497)
Q Consensus 343 ~g~~~f~~gNi~~~~f~l~fL~ 364 (497)
... +..|+++++|+.+.++
T Consensus 208 -~~s--~~~~~GiYi~~~~il~ 226 (302)
T PRK13389 208 -APS--NLAIVGRYVLSADIWP 226 (302)
T ss_pred -CCc--cEEEEEEEEECHHHHH
Confidence 001 2469999999988774
No 52
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.57 E-value=1.1e-05 Score=86.52 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=105.7
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
++.+|+||||.||||+...||.++|+ .||+++++.++++.+ .++. .+++.++ +..+.+.+
T Consensus 2 ~~~avIlAaG~g~Rl~~~~pK~ll~i---~Gkpli~~~l~~l~~---------------~gi~-~iivvv~-~~~~~i~~ 61 (458)
T PRK14354 2 NRYAIILAAGKGTRMKSKLPKVLHKV---CGKPMVEHVVDSVKK---------------AGID-KIVTVVG-HGAEEVKE 61 (458)
T ss_pred CceEEEEeCCCCcccCCCCChhhCEe---CCccHHHHHHHHHHh---------------CCCC-eEEEEeC-CCHHHHHH
Confidence 35689999999999998889999998 799999999998753 1211 2244444 55666776
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.+. +.+..|. .+.|+++.+..... .+ +..-+++++++.|+++
T Consensus 62 ~~~~~---------~~~~~~~---------------------~~~g~~~al~~a~~-----~l-~~~~d~vlv~~~D~p~ 105 (458)
T PRK14354 62 VLGDR---------SEFALQE---------------------EQLGTGHAVMQAEE-----FL-ADKEGTTLVICGDTPL 105 (458)
T ss_pred HhcCC---------cEEEEcC---------------------CCCCHHHHHHHHHH-----Hh-cccCCeEEEEECCccc
Confidence 66431 2221111 13466554443222 22 2223689999999986
Q ss_pred ccccCH-HHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEE
Q 010950 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (497)
Q Consensus 279 ~~~~Dp-~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~ 357 (497)
....|. .++-++...+++.++-+.+..+|.. -|++... .+|+ |+++-|-++.... .......|+++++
T Consensus 106 i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~-~g~v~~d-~~~~--V~~~~ek~~~~~~-------~~~~~~~~~Giy~ 174 (458)
T PRK14354 106 ITAETLKNLIDFHEEHKAAATILTAIAENPTG-YGRIIRN-ENGE--VEKIVEQKDATEE-------EKQIKEINTGTYC 174 (458)
T ss_pred cCHHHHHHHHHHHHhcCCceEEEEEEcCCCCC-ceEEEEc-CCCC--EEEEEECCCCChH-------HhcCcEEEEEEEE
Confidence 444432 2455555556666544444334433 3655443 2443 4444433221000 0012346899999
Q ss_pred EehHHHHHHhh
Q 010950 358 FTLDFLNQVAN 368 (497)
Q Consensus 358 f~l~fL~~~~~ 368 (497)
|+.++|.+.++
T Consensus 175 f~~~~l~~~l~ 185 (458)
T PRK14354 175 FDNKALFEALK 185 (458)
T ss_pred EEHHHHHHHHH
Confidence 99987766554
No 53
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=98.57 E-value=1.5e-06 Score=82.97 Aligned_cols=137 Identities=15% Similarity=0.256 Sum_probs=87.3
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgk-sllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
+|+||||.||||. .+.||.|+|+ .|+ +++++.++.+.. .++. ..+|.|+ +..+.+.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~---------------~gi~-~iivv~~-~~~~~i~ 60 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPF---GGRYRLIDFPLSNMVN---------------SGIR-NVGVLTQ-YKSRSLN 60 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEE---CCeeeeHHHHHHHHHH---------------CCCC-EEEEEeC-CChHHHH
Confidence 3889999999996 4789999999 788 999999998754 1221 2356666 4578899
Q ss_pred HHHhhcCCCCCCC--CcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCC
Q 010950 198 KYFEGHKYFGLES--DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (497)
Q Consensus 198 ~~~~~~~~FGl~~--~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vD 275 (497)
++|.+...+|++. ..+.+..... ......|.|+|+....... .+....-+.++|.+.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~gD 120 (200)
T cd02508 61 DHLGSGKEWDLDRKNGGLFILPPQQ---------------RKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSGD 120 (200)
T ss_pred HHHhCCCcccCCCCCCCEEEeCccc---------------CCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecCC
Confidence 9998766666541 1232221000 0012347798887766433 2333334788999999
Q ss_pred cccccccCHHHHHHHhhcCCcEEE
Q 010950 276 NALVRVADPTFLGYFIDKGVSAGA 299 (497)
Q Consensus 276 N~L~~~~Dp~~lG~~~~~~~~~~~ 299 (497)
++ ....--.++-++..++.++++
T Consensus 121 ~v-~~~~~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 121 HI-YNMDYREMLDFHIESGADITV 143 (200)
T ss_pred EE-EecCHHHHHHHHHHcCCCEEE
Confidence 96 333333466667666655543
No 54
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=98.57 E-value=1.5e-06 Score=86.13 Aligned_cols=187 Identities=18% Similarity=0.239 Sum_probs=112.7
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||. .+.||.|+|+ .|++++++.++.+.+ .+ |.-++....+..+.+.+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv---~~~p~i~~~~~~~~~---------------~g--i~~i~iv~~~~~~~i~~ 60 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEI---GGRPILWHIMKIYSH---------------YG--HNDFILCLGYKGHVIKE 60 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEE---CCEEHHHHHHHHHHh---------------CC--CceEEEECCCCHHHHHH
Confidence 4899999999997 4689999998 899999887776643 12 33345555678899999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeec----CCCcc----ccccCCCchhhHhhhhccHHHHHHHcCc-eEE
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIME----TPYKV----AKAPDGNGGVYSALKSSKLLEDMATRGI-KYI 269 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~----~~~~~----~~~P~GhGgi~~aL~~sg~l~~l~~~G~-~yi 269 (497)
|+++...+|. ++.+-.|. |++... +++.+ ...|.|+||.+....+ .+ +. +++
T Consensus 61 ~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~-----~~---~~~~~~ 121 (253)
T cd02524 61 YFLNYFLHNS---DVTIDLGT--------NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRR-----YL---GDDETF 121 (253)
T ss_pred HHHhhhhhcC---ceeEeecc--------cceeeecccccccceeecccCcccccHHHHHHHHH-----hc---CCCCeE
Confidence 9987544442 22222111 000000 01110 1225677776544322 12 22 799
Q ss_pred EEEeCCcccccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCccccc
Q 010950 270 DCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFC 349 (497)
Q Consensus 270 ~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~ 349 (497)
.+.+.|++.-... -.++-+|...++++.+.++. . ...-|++... .+| .|.++.+-+.. . . .
T Consensus 122 lv~~gD~i~~~dl-~~ll~~h~~~~~~~tl~~~~--~-~~~~g~v~~d-~~g--~V~~~~ekp~~---------~-~--~ 182 (253)
T cd02524 122 MLTYGDGVSDVNI-NALIEFHRSHGKLATVTAVH--P-PGRFGELDLD-DDG--QVTSFTEKPQG---------D-G--G 182 (253)
T ss_pred EEEcCCEEECCCH-HHHHHHHHHcCCCEEEEEec--C-CCcccEEEEC-CCC--CEEEEEECCCC---------C-C--c
Confidence 9999999853333 45667777888888765553 2 3344776554 245 45555553321 0 0 1
Q ss_pred ccceeeEEEehHHHHHH
Q 010950 350 WSNVCLHMFTLDFLNQV 366 (497)
Q Consensus 350 ~gNi~~~~f~l~fL~~~ 366 (497)
..|+++++|+.+.++.+
T Consensus 183 ~i~~Giyi~~~~l~~~l 199 (253)
T cd02524 183 WINGGFFVLEPEVFDYI 199 (253)
T ss_pred eEEEEEEEECHHHHHhh
Confidence 35788999998876443
No 55
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.54 E-value=1.5e-05 Score=85.23 Aligned_cols=179 Identities=17% Similarity=0.153 Sum_probs=102.3
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHH
Q 010950 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200 (497)
Q Consensus 121 avvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~ 200 (497)
.+|+||||.||||+.+.||.++|+ .|++++++.++++.+ .+. -..+|.++. ..+.+.+++
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~---------------~g~-~~iiiv~~~-~~~~i~~~~ 61 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVIDAARA---------------LGP-QKIHVVYGH-GAEQVRKAL 61 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhcee---CCccHHHHHHHHHHh---------------CCC-CeEEEEECC-CHHHHHHHh
Confidence 368999999999998889999998 899999999988753 121 133566664 467788887
Q ss_pred hhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccccc
Q 010950 201 EGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 280 (497)
Q Consensus 201 ~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~~ 280 (497)
.+. ++.++.|. .|.|.++...... +.+ . .-+++++.+.|.++..
T Consensus 62 ~~~--------~i~~~~~~---------------------~~~G~~~ai~~a~-----~~l-~-~~~~~lv~~~D~p~i~ 105 (451)
T TIGR01173 62 ANR--------DVNWVLQA---------------------EQLGTGHAVLQAL-----PFL-P-DDGDVLVLYGDVPLIS 105 (451)
T ss_pred cCC--------CcEEEEcC---------------------CCCchHHHHHHHH-----Hhc-C-CCCcEEEEECCcCCcC
Confidence 652 23344332 1336655333322 122 1 2268999999998532
Q ss_pred ccCHH-HHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEEe
Q 010950 281 VADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFT 359 (497)
Q Consensus 281 ~~Dp~-~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f~ 359 (497)
..+-. ++-.+.+. .+++-+.+...|.. .|.+... ++|+ |.++.|-++..... . .....|++.++|+
T Consensus 106 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~~-~g~v~~d-~~g~--v~~~~ek~~~~~~~---~----~~~~~~~G~y~~~ 172 (451)
T TIGR01173 106 AETLERLLEAHRQN--GITLLTAKLPDPTG-YGRIIRE-NDGK--VTAIVEDKDANAEQ---K----AIKEINTGVYVFD 172 (451)
T ss_pred HHHHHHHHHHHhhC--CEEEEEEecCCCCC-CCEEEEc-CCCC--EEEEEEcCCCChHH---h----cCcEEEEEEEEEe
Confidence 22211 22223222 23333333333333 4766543 3453 55555433211100 0 0124588899999
Q ss_pred hHHHHHHhh
Q 010950 360 LDFLNQVAN 368 (497)
Q Consensus 360 l~fL~~~~~ 368 (497)
.++|.+.++
T Consensus 173 ~~~l~~~l~ 181 (451)
T TIGR01173 173 GAALKRWLP 181 (451)
T ss_pred HHHHHHHHH
Confidence 999866654
No 56
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=5.2e-06 Score=82.49 Aligned_cols=174 Identities=22% Similarity=0.285 Sum_probs=120.0
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
-|+||||.||||. ...||.++|| .+|+++++-++++.. | +.. -+.|.++..+-...++
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV---~~KPmi~y~l~~L~~----a-----------GI~-dI~II~~~~~~~~~~~ 63 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPV---YDKPMIYYPLETLML----A-----------GIR-DILIVVGPEDKPTFKE 63 (286)
T ss_pred cEEecCcCccccccccccCCccccee---cCcchhHhHHHHHHH----c-----------CCc-eEEEEecCCchhhhhh
Confidence 4899999999996 8889999999 899999999999853 1 221 2377788888899999
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.+-..||+ ++++-.|++ |.|=+..+..- +++. |-+-+.++-.||++
T Consensus 64 llGdgs~~gv---~itY~~Q~~---------------------p~GlA~Av~~a------~~fv--~~~~f~l~LGDNi~ 111 (286)
T COG1209 64 LLGDGSDFGV---DITYAVQPE---------------------PDGLAHAVLIA------EDFV--GDDDFVLYLGDNIF 111 (286)
T ss_pred hhcCccccCc---ceEEEecCC---------------------CCcHHHHHHHH------Hhhc--CCCceEEEecCcee
Confidence 9999889997 588999886 88888887732 3343 56778899999998
Q ss_pred ccccCHHHHHHHhh--cCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeE
Q 010950 279 VRVADPTFLGYFID--KGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 356 (497)
Q Consensus 279 ~~~~Dp~~lG~~~~--~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~ 356 (497)
-. .-..++-.+.+ .++.+.+.-|+ +|.. -||+... .+| +++.--|-|++- +-+.+-++.+
T Consensus 112 ~~-~l~~~~~~~~~~~~ga~i~~~~V~--dP~r-fGV~e~d-~~~--~v~~l~EKP~~P-----------~SNlAvtGlY 173 (286)
T COG1209 112 QD-GLSELLEHFAEEGSGATILLYEVD--DPSR-YGVVEFD-EDG--KVIGLEEKPKEP-----------KSNLAVTGLY 173 (286)
T ss_pred cc-ChHHHHHHHhccCCCcEEEEEEcC--Cccc-ceEEEEc-CCC--cEEEeEECCCCC-----------CCceeEEEEE
Confidence 66 33445655555 34444444343 5644 4776654 345 444443433221 1135567788
Q ss_pred EEehHHHH
Q 010950 357 MFTLDFLN 364 (497)
Q Consensus 357 ~f~l~fL~ 364 (497)
+|+-+-.+
T Consensus 174 ~~d~~Vf~ 181 (286)
T COG1209 174 FYDPSVFE 181 (286)
T ss_pred EeChHHHH
Confidence 88875543
No 57
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=98.49 E-value=2.4e-06 Score=83.02 Aligned_cols=175 Identities=16% Similarity=0.178 Sum_probs=104.2
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG~---~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||+. ..||.++|+ .|++++++.++.+.. .++. ..+|.|. +..+.+.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~---~g~~li~~~l~~l~~---------------~gi~-~i~vv~~-~~~~~~~~ 60 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEI---NGKPLLERQIETLKE---------------AGID-DIVIVTG-YKKEQIEE 60 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeE---CCEEHHHHHHHHHHH---------------CCCc-eEEEEec-cCHHHHHH
Confidence 47999999999974 569999998 789999999988753 1111 2244444 57788888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.+. + .+.+..++. +.+.|.++.+.+.. +.+ -+++++.+.|++.
T Consensus 61 ~~~~~--~-----~~~~~~~~~-------------------~~~~g~~~s~~~~~-----~~~----~~~~lv~~~D~~~ 105 (229)
T cd02523 61 LLKKY--P-----NIKFVYNPD-------------------YAETNNIYSLYLAR-----DFL----DEDFLLLEGDVVF 105 (229)
T ss_pred HHhcc--C-----CeEEEeCcc-------------------hhhhCcHHHHHHHH-----HHc----CCCEEEEeCCEec
Confidence 88753 2 233333221 12457765544432 222 3789999999973
Q ss_pred ccccCHHHHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEE
Q 010950 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (497)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f 358 (497)
++.++-.+.+.+.++++-+.+... ....+..+... ++ -.+++..+.+.... . ....|++++.|
T Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~v~~~~~k~~~~~------~----~~~~~~Giy~~ 168 (229)
T cd02523 106 ----DPSILERLLSSPADNAILVDKKTK-EWEDEYVKDLD-DA-GVLLGIISKAKNLE------E----IQGEYVGISKF 168 (229)
T ss_pred ----CHHHHHHHHcCCCCCeEEEccCcc-cccccceeeec-Cc-cceEeecccCCCcc------h----hceEEEeEEEE
Confidence 456777788888887665554221 22222222211 21 12333333321110 0 12458889999
Q ss_pred ehHHHHHHhh
Q 010950 359 TLDFLNQVAN 368 (497)
Q Consensus 359 ~l~fL~~~~~ 368 (497)
+-++++++.+
T Consensus 169 ~~~~~~~l~~ 178 (229)
T cd02523 169 SPEDADRLAE 178 (229)
T ss_pred CHHHHHHHHH
Confidence 9999877654
No 58
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=98.48 E-value=2.9e-06 Score=84.55 Aligned_cols=186 Identities=17% Similarity=0.164 Sum_probs=107.3
Q ss_pred EEEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 121 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 121 avvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
-+|+||||.||||. ...||.++|+ .|++++++.++.+.+ .++. ..+|. ..+..+.+.
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv---~gkpli~~~l~~l~~---------------~gi~-~i~iv-~~~~~~~i~ 61 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPVIQYIVEEAVA---------------AGIE-DIIIV-TGRGKRAIE 61 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEE---CCEEHHHHHHHHHHH---------------CCCC-EEEEE-eCCchHHHH
Confidence 36899999999997 3679999999 799999999998753 1221 22444 456778898
Q ss_pred HHHhhcCCCCC-----------------C-CCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHH
Q 010950 198 KYFEGHKYFGL-----------------E-SDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLE 259 (497)
Q Consensus 198 ~~~~~~~~FGl-----------------~-~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~ 259 (497)
++|.....+.. + ...+.+..| ..|-|.|+.+.....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------------------~~~~Gt~~al~~~~~----- 115 (267)
T cd02541 62 DHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQ---------------------KEPLGLGHAVLCAKP----- 115 (267)
T ss_pred HHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEEc---------------------CCCCChHHHHHHHHH-----
Confidence 88864211100 0 012222222 235688777655432
Q ss_pred HHHHcCceEEEEEeCCcccccccC---HHHHHHHhhcCCcEE-EEEeecCCCCCccceEEEecCCC-CeEEEEeccCChh
Q 010950 260 DMATRGIKYIDCYGVDNALVRVAD---PTFLGYFIDKGVSAG-AKVVRKAYPQEKVGVFVRRGKGG-PLTVVEYSELDPS 334 (497)
Q Consensus 260 ~l~~~G~~yi~v~~vDN~L~~~~D---p~~lG~~~~~~~~~~-~kvv~k~~p~e~vGvi~~~~~~g-~~~vvEYsel~~~ 334 (497)
... .+.+.|.+.|+++ ...| -.++-.|...+.++. ..-++...+ ..-|++.....+| ...|.++.|-|..
T Consensus 116 -~i~--~~~~lv~~gD~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~~~~~v~~~~Ekp~~ 190 (267)
T cd02541 116 -FIG--DEPFAVLLGDDLI-DSKEPCLKQLIEAYEKTGASVIAVEEVPPEDV-SKYGIVKGEKIDGDVFKVKGLVEKPKP 190 (267)
T ss_pred -HhC--CCceEEEECCeEE-eCCchHHHHHHHHHHHhCCCEEEEEEcChhcC-ccceEEEeecCCCCceEEeEEEECCCC
Confidence 122 2667888899985 3332 246676766666642 222221122 3347765531111 2356666664431
Q ss_pred hhhhccccCCcccccccceeeEEEehHHHHHH
Q 010950 335 LASAINQETGRLRFCWSNVCLHMFTLDFLNQV 366 (497)
Q Consensus 335 ~~~~~~~~~g~~~f~~gNi~~~~f~l~fL~~~ 366 (497)
.. .. . ...|+++++|+-+++..+
T Consensus 191 ~~-------~~-~-~~~~~Giyi~~~~~~~~l 213 (267)
T cd02541 191 EE-------AP-S-NLAIVGRYVLTPDIFDIL 213 (267)
T ss_pred CC-------CC-C-ceEEEEEEEcCHHHHHHH
Confidence 10 00 0 245889999999887655
No 59
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=98.47 E-value=6.4e-06 Score=80.55 Aligned_cols=184 Identities=17% Similarity=0.194 Sum_probs=105.5
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
++.+|+||||.|+||+ ||.++++ .||+++++.++++.+. .+ +.-+++.+. ++.+.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i---~gkpll~~~l~~l~~~--------------~~--i~~ivvv~~--~~~i~~ 56 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADI---AGKPMIQHVYERAKKA--------------KG--LDEVVVATD--DERIAD 56 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCccc---CCcCHHHHHHHHHHhC--------------CC--CCEEEEECC--cHHHHH
Confidence 4678999999999996 7999998 8999999999988541 01 222333333 478888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++.+ +| +.+..+.. ..+.|.|++..++.. + ....+++++.+.|+++
T Consensus 57 ~~~~---~~-----~~~~~~~~-------------------~~~~gt~~~~~~~~~------~-~~~~d~vlv~~gD~Pl 102 (239)
T cd02517 57 AVES---FG-----GKVVMTSP-------------------DHPSGTDRIAEVAEK------L-DADDDIVVNVQGDEPL 102 (239)
T ss_pred HHHH---cC-----CEEEEcCc-------------------ccCchhHHHHHHHHh------c-CCCCCEEEEecCCCCC
Confidence 8864 33 22222211 114577766655422 2 1124789999999987
Q ss_pred ccccCH-HHHHHHhhc-CCcEEEEEeecCCCC--Cccce--EEEecCCCCeEEEEeccCCh-hhhhhccccCCccccccc
Q 010950 279 VRVADP-TFLGYFIDK-GVSAGAKVVRKAYPQ--EKVGV--FVRRGKGGPLTVVEYSELDP-SLASAINQETGRLRFCWS 351 (497)
Q Consensus 279 ~~~~Dp-~~lG~~~~~-~~~~~~kvv~k~~p~--e~vGv--i~~~~~~g~~~vvEYsel~~-~~~~~~~~~~g~~~f~~g 351 (497)
....+. .++-.+... +.++++-+++..+|. ...|. ++.. .+| .|.++.+-+. +.... ++ -.. ...
T Consensus 103 i~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~--~v~~~~~~~~~~~~~~-~~--~~~--~~~ 174 (239)
T cd02517 103 IPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD-KDG--YALYFSRSPIPYPRDS-SE--DFP--YYK 174 (239)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC-CCC--CEEEecCCCCCCCCCC-CC--CCc--eeE
Confidence 544332 234434334 566655455443333 01233 3332 245 3556654321 11100 00 011 246
Q ss_pred ceeeEEEehHHHHHHhh
Q 010950 352 NVCLHMFTLDFLNQVAN 368 (497)
Q Consensus 352 Ni~~~~f~l~fL~~~~~ 368 (497)
|++++.|+.+.++.+..
T Consensus 175 ~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 175 HIGIYAYRRDFLLRFAA 191 (239)
T ss_pred EEEEEEECHHHHHHHHh
Confidence 99999999999987654
No 60
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.4e-06 Score=84.23 Aligned_cols=259 Identities=18% Similarity=0.245 Sum_probs=160.0
Q ss_pred CEEEEEecCC--Ccccc---CCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCch
Q 010950 119 KLAVLLLSGG--QGTRL---GSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (497)
Q Consensus 119 kvavvlLAGG--~GTRL---G~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~ 193 (497)
++..|+|.|| .|||. .++.||.+||| .|.++.++.++...++..++ -+++.-++..
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpi---aG~pmI~Hhi~ac~qi~~l~----------------eI~LvGFy~e 62 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPI---AGVPMIHHHISACKQISGLA----------------EILLVGFYEE 62 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCcccc---CCcchhhhhHHHHhcccchh----------------heeEEecccc
Confidence 3455666677 79996 59999999999 99999999988776544332 2456667888
Q ss_pred HHHHHHHhhcC-CCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEE
Q 010950 194 DATRKYFEGHK-YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCY 272 (497)
Q Consensus 194 ~~t~~~~~~~~-~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~ 272 (497)
+....|+..-. .|-++ |++.. +-+|.|.||-+..+++ +..+-.-..+|+.
T Consensus 63 ~~f~~fis~~~~e~~~p---vrYL~---------------------E~~plGtaGgLyhFrd-----qIl~g~ps~vFvl 113 (407)
T KOG1460|consen 63 RVFTDFISAIQQEFKVP---VRYLR---------------------EDNPLGTAGGLYHFRD-----QILAGSPSAVFVL 113 (407)
T ss_pred hHHHHHHHHHHhhcccc---hhhhc---------------------cCCCCCcccceeehhh-----HHhcCCCceEEEE
Confidence 88888887622 23221 33222 4469999988777665 3556678899999
Q ss_pred eCCcccccccCHHHHHHHhhcCCcEEEEEee--cCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccc
Q 010950 273 GVDNALVRVADPTFLGYFIDKGVSAGAKVVR--KAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCW 350 (497)
Q Consensus 273 ~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~--k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~ 350 (497)
|.|=. +...-+.++..|...+..+.+-++. |.. ...-|.++.....| .|+-|.|-|..... ..
T Consensus 114 naDVC-csfPl~~ml~ahr~~g~~~tll~tkvs~e~-asnfG~lV~dP~t~--evlHYveKPsTfvS-----------d~ 178 (407)
T KOG1460|consen 114 NADVC-CSFPLQDMLEAHRRYGGIGTLLVTKVSREQ-ASNFGCLVEDPSTG--EVLHYVEKPSTFVS-----------DI 178 (407)
T ss_pred eccee-cCCcHHHHHHHHhhcCCceEEEEEEecHhH-hhccCeeeecCCcC--ceEEeecCcchhhh-----------cc
Confidence 99987 5666678999998888877643332 222 33447777752233 58889998864331 24
Q ss_pred cceeeEEEehHHHHHHhhccccCccceeeecccCccCCC-cccchhhhhHhhcCcCCCceeEEEEecCccccccccCCCC
Q 010950 351 SNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQ-TVGFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGS 429 (497)
Q Consensus 351 gNi~~~~f~l~fL~~~~~~~~~~lp~h~a~Kki~~~~~~-~~~~klE~fifD~~~~~~~~~~~~V~R~~eFsPvKn~~g~ 429 (497)
-|.+++.|+-+.++.+.+..+...-..-..|..|.++.. ..-++||+=++--+.-.+...+++.++ =++-+|.+--
T Consensus 179 InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~--fW~QiKtags- 255 (407)
T KOG1460|consen 179 INCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTD--FWSQIKTAGS- 255 (407)
T ss_pred cceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEeccc--HHHHhccccc-
Confidence 588899999887766544321100000111223333322 223788865543322233455666664 4788888532
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 010950 430 NFDTPDSARLLVLRLHTR 447 (497)
Q Consensus 430 ~~dsp~ta~~~l~~~~~~ 447 (497)
..-|-..++.+.++
T Consensus 256 ----al~as~lYLs~yk~ 269 (407)
T KOG1460|consen 256 ----ALYASRLYLSQYKR 269 (407)
T ss_pred ----eeehhhhHHHHHhh
Confidence 33444455555444
No 61
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.42 E-value=6.6e-06 Score=88.50 Aligned_cols=180 Identities=19% Similarity=0.168 Sum_probs=106.9
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
++.+|+||||.||||+...||.++|+ .|++++++.++.+.+ .++. ..++.++ +..+.+.+
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i---~gkpli~~~i~~l~~---------------~gi~-~i~vv~~-~~~~~i~~ 64 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTL---AGKPMVQHVIDAANE---------------LGAQ-HVHLVYG-HGGDLLKQ 64 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhccee---CChhHHHHHHHHHHh---------------cCCC-cEEEEEC-CCHHHHHH
Confidence 57899999999999998889999998 899999999998743 1111 2355555 45667777
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++... ++.+..|+ .+.|.|+....... .+ . .-+++++.+.|+++
T Consensus 65 ~~~~~--------~~~~i~~~---------------------~~~Gt~~al~~a~~-----~l-~-~~~~vlV~~gD~P~ 108 (456)
T PRK09451 65 TLADE--------PLNWVLQA---------------------EQLGTGHAMQQAAP-----FF-A-DDEDILMLYGDVPL 108 (456)
T ss_pred hhccC--------CcEEEECC---------------------CCCCcHHHHHHHHH-----hh-c-cCCcEEEEeCCccc
Confidence 76531 23333332 25577765544322 12 1 24689999999986
Q ss_pred ccccCHH-HHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEE
Q 010950 279 VRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (497)
Q Consensus 279 ~~~~Dp~-~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~ 357 (497)
....+.. ++..+...+ ..+-+++-.+|.+ -|++. . .+| .|+++.|-|...... ...+..|+++++
T Consensus 109 i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~-yG~v~-~-~~g--~V~~~~EKp~~~~~~-------~~~~~~~~GiYi 174 (456)
T PRK09451 109 ISVETLQRLRDAKPQGG--IGLLTVKLDNPTG-YGRIT-R-ENG--KVVGIVEQKDATDEQ-------RQIQEINTGILV 174 (456)
T ss_pred CCHHHHHHHHHHhhcCC--EEEEEEEcCCCCC-ceEEE-e-cCC--eEEEEEECCCCChHH-------hhccEEEEEEEE
Confidence 4332221 233332233 3333344445544 47753 3 245 455665544211000 011246999999
Q ss_pred EehHHHHHHhh
Q 010950 358 FTLDFLNQVAN 368 (497)
Q Consensus 358 f~l~fL~~~~~ 368 (497)
|+.+.|.+.++
T Consensus 175 ~~~~~l~~~l~ 185 (456)
T PRK09451 175 ANGADLKRWLA 185 (456)
T ss_pred EEHHHHHHHHH
Confidence 99988877665
No 62
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.34 E-value=1.1e-05 Score=84.04 Aligned_cols=197 Identities=16% Similarity=0.287 Sum_probs=111.8
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCC-ChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgk-sllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
+|+||||.||||+ .+.||.|+|+ .|+ +++++.++.+.. .+ |.-++....+..+.+.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~ 60 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPF---GGKYRIIDFPLSNCIN---------------SG--IRRIGVLTQYKSHSLN 60 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccccee---cceeeEeeehhhhhhh---------------cC--CceEEEEeccChHHHH
Confidence 3899999999997 4689999999 889 799999988754 12 2223444456667899
Q ss_pred HHHhhcCCCCCCC---CcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeC
Q 010950 198 KYFEGHKYFGLES---DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (497)
Q Consensus 198 ~~~~~~~~FGl~~---~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~v 274 (497)
++|.+. +++.. ..+.++.... + ..-...|.|.|+...... +.+....-+++.+.+.
T Consensus 61 ~~~~~~--~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~Gt~~al~~a~-----~~~~~~~~~~~lv~~g 119 (361)
T TIGR02091 61 RHIQRG--WDFDGFIDGFVTLLPAQQ-R-------------ESGTDWYQGTADAVYQNL-----DLIEDYDPEYVLILSG 119 (361)
T ss_pred HHHHhc--cCccCccCCCEEEeCCcc-c-------------CCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecC
Confidence 998752 33321 1222221000 0 000123568877665322 1222223468999999
Q ss_pred CcccccccCHHHHHHHhhcCCcEEEEEeec--CCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccc
Q 010950 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSN 352 (497)
Q Consensus 275 DN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k--~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gN 352 (497)
|++. ...-..++-.+..++.++.+-+.+. ..+ ...|++... .+| .|.++.|-|..-... .+.......|
T Consensus 120 D~l~-~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~-~~~g~v~~d-~~~--~v~~~~ekp~~~~~~----~~~~~~~~~~ 190 (361)
T TIGR02091 120 DHIY-KMDYEKMLDYHIESGADVTIACIPVPRKEA-SRFGVMQVD-EDG--RIVDFEEKPANPPSI----PGMPDFALAS 190 (361)
T ss_pred CEEE-cCCHHHHHHHHHHcCCCEEEEEEecChHhc-ccccEEEEC-CCC--CEEEEEECCCCcccc----cccccccEEe
Confidence 9963 3322345666666676655433332 223 344777664 234 366666644211000 0000112469
Q ss_pred eeeEEEehHHHHHHhh
Q 010950 353 VCLHMFTLDFLNQVAN 368 (497)
Q Consensus 353 i~~~~f~l~fL~~~~~ 368 (497)
++++.|+.+.|.+.+.
T Consensus 191 ~Giyi~~~~~l~~~l~ 206 (361)
T TIGR02091 191 MGIYIFDKDVLKELLE 206 (361)
T ss_pred eeEEEEcHHHHHHHHH
Confidence 9999999999866654
No 63
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.33 E-value=8.1e-06 Score=78.99 Aligned_cols=133 Identities=11% Similarity=0.136 Sum_probs=85.6
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.||||+ .+.||.++|+ .|++++++.++.+.+ .++. .++|.++....+.+++
T Consensus 3 aVILAgG~g~R~~plt~~~pK~Llpv---~g~pli~~~l~~l~~---------------~g~~-~iivv~~~~~~~~i~~ 63 (214)
T cd04198 3 AVILAGGGGSRLYPLTDNIPKALLPV---ANKPMIWYPLDWLEK---------------AGFE-DVIVVVPEEEQAEIST 63 (214)
T ss_pred EEEEeCCCCCcCCccccCCCcccCEE---CCeeHHHHHHHHHHH---------------CCCC-eEEEEECHHHHHHHHH
Confidence 5779999999997 4789999999 799999999998754 1111 2366666555567888
Q ss_pred HHhhcCCCCCCC-CcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcc
Q 010950 199 YFEGHKYFGLES-DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (497)
Q Consensus 199 ~~~~~~~FGl~~-~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~ 277 (497)
++++..+ .... ..+.+.. ...+.|.|+..+..... + .+.+.|.+.|.+
T Consensus 64 ~l~~~~~-~~~~~~~~~~~~---------------------~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~i 112 (214)
T cd04198 64 YLRSFPL-NLKQKLDEVTIV---------------------LDEDMGTADSLRHIRKK-----I----KKDFLVLSCDLI 112 (214)
T ss_pred HHHhccc-ccCcceeEEEec---------------------CCCCcChHHHHHHHHhh-----c----CCCEEEEeCccc
Confidence 8876321 1110 1111111 12366999988876552 1 356888889965
Q ss_pred cccccCHHHHHHHhhcCCcEEEEEeecC
Q 010950 278 LVRVADPTFLGYFIDKGVSAGAKVVRKA 305 (497)
Q Consensus 278 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~ 305 (497)
. ...--.++-.+..+++.+++-+.+..
T Consensus 113 ~-~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 113 T-DLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred c-ccCHHHHHHHHhccCCcEEEEEeccC
Confidence 3 33323466777778888876555443
No 64
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.33 E-value=1.5e-05 Score=86.37 Aligned_cols=195 Identities=13% Similarity=0.130 Sum_probs=108.0
Q ss_pred EEEecCCCccccC----CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 122 VLLLSGGQGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 122 vvlLAGG~GTRLG----~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
.|+||||.||||+ .+.||.++|+ ..++|++|+.++++..+ ++. ..+|.|+..-...+.
T Consensus 3 ~vILAgG~GtRl~PlS~~~~PK~~l~l--~g~~~ll~~tl~~l~~~---------------~~~-~iviv~~~~~~~~~~ 64 (468)
T TIGR01479 3 PVILAGGSGTRLWPLSRELYPKQFLAL--VGDLTMLQQTLKRLAGL---------------PCS-SPLVICNEEHRFIVA 64 (468)
T ss_pred EEEecCcccccCCccccCCCCCceeEc--CCCCcHHHHHHHHHhcC---------------CCc-CcEEecCHHHHHHHH
Confidence 6899999999997 3579999887 23389999999987531 111 235666654444566
Q ss_pred HHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHH--cCceEEEEEeCC
Q 010950 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT--RGIKYIDCYGVD 275 (497)
Q Consensus 198 ~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~--~G~~yi~v~~vD 275 (497)
+.+++ +|++. ..+..|+ .+.|+|+...... ..+.+ .+-.+++|.+.|
T Consensus 65 ~~l~~---~~~~~--~~~i~Ep---------------------~~~gTa~ai~~aa-----~~~~~~~~~~~~vlVl~~D 113 (468)
T TIGR01479 65 EQLRE---IGKLA--SNIILEP---------------------VGRNTAPAIALAA-----LLAARRNGEDPLLLVLAAD 113 (468)
T ss_pred HHHHH---cCCCc--ceEEecc---------------------cccCchHHHHHHH-----HHHHHHHCCCcEEEEecCc
Confidence 66664 34332 1233433 2446766543311 11222 234679999999
Q ss_pred cccccccC-HHHHHHH---hhcCCcEEEEEeecCCCCCccceEEEecC--C-CCeEEEEeccCChhhhhhccccCCcccc
Q 010950 276 NALVRVAD-PTFLGYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGK--G-GPLTVVEYSELDPSLASAINQETGRLRF 348 (497)
Q Consensus 276 N~L~~~~D-p~~lG~~---~~~~~~~~~kvv~k~~p~e~vGvi~~~~~--~-g~~~vvEYsel~~~~~~~~~~~~g~~~f 348 (497)
+++....+ -.++-.+ .+.+..+++-+.+ +.|...-|.|..... + +...|..+.|-|+.......-..|.. +
T Consensus 114 ~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p-~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~-~ 191 (468)
T TIGR01479 114 HVITDEDAFQAAVKLAMPAAAEGKLVTFGIVP-THPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDY-Y 191 (468)
T ss_pred eeecCHHHHHHHHHHHHHHHhcCCEEEEEecC-CCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCe-E
Confidence 98532111 1122222 2345444454544 445555588765310 1 22356566666653111101112321 3
Q ss_pred cccceeeEEEehHHHHHHhhc
Q 010950 349 CWSNVCLHMFTLDFLNQVANG 369 (497)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~~ 369 (497)
-|.++++|+.+.|.+.+..
T Consensus 192 --wNsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 192 --WNSGMFLFRASRYLAELKK 210 (468)
T ss_pred --EEeeEEEEEHHHHHHHHHH
Confidence 4999999998888766654
No 65
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.03 E-value=7.3e-05 Score=72.50 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=91.2
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||||.|+||+ ...||.++|+ .|++++++.++.+.+ .++. ..+|++... .+.+.+
T Consensus 3 avIlagg~g~rl~plt~~~pK~llpv---~g~pli~~~l~~l~~---------------~gi~-~i~vv~~~~-~~~~~~ 62 (216)
T cd02507 3 AVVLADGFGSRFLPLTSDIPKALLPV---ANVPLIDYTLEWLEK---------------AGVE-EVFVVCCEH-SQAIIE 62 (216)
T ss_pred EEEEeCCCccccCccccCCCcccceE---CCEEHHHHHHHHHHH---------------CCCC-eEEEEeCCc-HHHHHH
Confidence 5779999999997 4789999999 899999998887743 1221 235666644 556666
Q ss_pred HHhhcCCCCCCC-CcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcc
Q 010950 199 YFEGHKYFGLES-DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (497)
Q Consensus 199 ~~~~~~~FGl~~-~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~ 277 (497)
++.+..+..... ..+.+.. .. ...+.|.++....... . + .+.+.+.+.|.+
T Consensus 63 ~~~~~~~~~~~~~~~v~~~~---------------~~----~~~~~Gta~~l~~~~~--~---i----~~dflv~~gD~i 114 (216)
T cd02507 63 HLLKSKWSSLSSKMIVDVIT---------------SD----LCESAGDALRLRDIRG--L---I----RSDFLLLSCDLV 114 (216)
T ss_pred HHHhcccccccCCceEEEEE---------------cc----CCCCCccHHHHHHHhh--c---C----CCCEEEEeCCEe
Confidence 776543210000 0111110 00 1125577766554322 1 1 356888999986
Q ss_pred cccccCHHHHHH--HhhcCCcEEEEEeecCCC--------CCccceEEEecCCCCeEEEEeccCChh
Q 010950 278 LVRVADPTFLGY--FIDKGVSAGAKVVRKAYP--------QEKVGVFVRRGKGGPLTVVEYSELDPS 334 (497)
Q Consensus 278 L~~~~Dp~~lG~--~~~~~~~~~~kvv~k~~p--------~e~vGvi~~~~~~g~~~vvEYsel~~~ 334 (497)
. ...-..++-. ....+.++.+.+.....+ .+.-++++...+.++..++.|.+-+++
T Consensus 115 ~-~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 180 (216)
T cd02507 115 S-NIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE 180 (216)
T ss_pred e-cCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCc
Confidence 3 3322334522 333444544333332211 122367766544456788888876544
No 66
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.02 E-value=0.0002 Score=69.54 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=32.6
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERIL 161 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~ 161 (497)
+|+||||.||||+ .+.||.|+|+ .|++++++.++.+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i---~g~pli~~~l~~l~ 40 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEV---DGKPMIEWVIESLA 40 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEE---CCEEHHHHHHHhhh
Confidence 5899999999995 4679999998 89999999988774
No 67
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=97.98 E-value=0.00036 Score=68.12 Aligned_cols=178 Identities=20% Similarity=0.223 Sum_probs=99.3
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
++++|+||||.++||+ +|-+.++ .||+++++.++++.+. .++. .++|-| . ++.+.+
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i---~GkPli~~~i~~l~~~--------------~~~~-~ivv~t-~--~~~i~~ 57 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDI---LGKPMIQHVYERAAQA--------------AGVE-EVYVAT-D--DQRIED 57 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCcc---CCcCHHHHHHHHHHhc--------------CCCC-eEEEEC-C--hHHHHH
Confidence 5788999999999995 4999888 8999999999987541 0111 224433 2 478888
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
++++ +|. .+ +.+. ...+.|.+++..++. .+ +.+++++.+.|+++
T Consensus 58 ~~~~---~~~---~v--~~~~-------------------~~~~~g~~~~~~a~~------~~---~~d~~lv~~~D~P~ 101 (238)
T PRK13368 58 AVEA---FGG---KV--VMTS-------------------DDHLSGTDRLAEVML------KI---EADIYINVQGDEPM 101 (238)
T ss_pred HHHH---cCC---eE--EecC-------------------ccCCCccHHHHHHHH------hC---CCCEEEEEcCCcCc
Confidence 8875 342 12 2211 011346665544432 22 56889999999997
Q ss_pred ccccCHH-HHHHHhhcCC-cEEEEEeecC------CCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccc
Q 010950 279 VRVADPT-FLGYFIDKGV-SAGAKVVRKA------YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCW 350 (497)
Q Consensus 279 ~~~~Dp~-~lG~~~~~~~-~~~~kvv~k~------~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~ 350 (497)
....+-. ++..+...+. ++.+-+.+.. +|... |++.. ++|+ +..+.+-+.... .+ .......
T Consensus 102 i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~--~~g~--v~~~~~~~~~~~--~~---~~~~~~~ 171 (238)
T PRK13368 102 IRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVV-KVVVD--KNGD--ALYFSRSPIPSR--RD---GESARYL 171 (238)
T ss_pred CCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCC-EEEEC--CCCC--EEEeeCCCCCCC--CC---CCCCcee
Confidence 5433332 3444433443 3333333221 23222 33332 3564 334443211000 00 0111125
Q ss_pred cceeeEEEehHHHHHH
Q 010950 351 SNVCLHMFTLDFLNQV 366 (497)
Q Consensus 351 gNi~~~~f~l~fL~~~ 366 (497)
.|++++.|+.+++...
T Consensus 172 ~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 172 KHVGIYAFRRDVLQQF 187 (238)
T ss_pred EEEEEEEeCHHHHHHH
Confidence 6999999999999864
No 68
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=97.93 E-value=0.00011 Score=67.02 Aligned_cols=97 Identities=19% Similarity=0.323 Sum_probs=63.9
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHHh
Q 010950 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (497)
Q Consensus 122 vvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~~ 201 (497)
+|+||||.|+|||. ||.+.++ .|+|++++.++.+... ++ =+++|.+.. +++.+++.
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i---~g~~li~~~l~~l~~~---------------~~-~~Ivvv~~~---~~~~~~~~ 56 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPI---GGKPLIERVLEALREA---------------GV-DDIVVVTGE---EEIYEYLE 56 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEE---TTEEHHHHHHHHHHHH---------------TE-SEEEEEEST---HHHHHHHT
T ss_pred CEEECCcCcccCCC--CccceeE---CCccHHHHHHHHhhcc---------------CC-ceEEEecCh---HHHHHHHh
Confidence 58999999999985 9999888 9999999999988642 11 144666665 45666664
Q ss_pred hcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHc-CceEEEEEeCCccc
Q 010950 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR-GIKYIDCYGVDNAL 278 (497)
Q Consensus 202 ~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~-G~~yi~v~~vDN~L 278 (497)
.. .+.++... +.+ .|...+|.. -+..- +.++++|..+|-++
T Consensus 57 ~~--------~~~~v~~~----------------------~~~-~G~~~sl~~-----a~~~~~~~~~vlv~~~D~p~ 98 (160)
T PF12804_consen 57 RY--------GIKVVVDP----------------------EPG-QGPLASLLA-----ALSQLPSSEPVLVLPCDQPF 98 (160)
T ss_dssp TT--------TSEEEE-S----------------------TSS-CSHHHHHHH-----HHHTSTTSSEEEEEETTETT
T ss_pred cc--------CceEEEec----------------------ccc-CChHHHHHH-----HHHhcccCCCcEEEeCCccc
Confidence 32 23344321 112 344444332 12222 78999999999986
No 69
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.00015 Score=75.84 Aligned_cols=201 Identities=15% Similarity=0.233 Sum_probs=125.7
Q ss_pred CCEEEEEecCCCccccC---CCCCCccccccCCCCCC-hHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCch
Q 010950 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKS-LFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG---~~~PKg~~~i~l~sgks-llq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~ 193 (497)
.++-.++||||+|+||+ ...+|...|+ .||- +.++.+-.... .+.. -+++.|-...|
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpF---gGkYRiIDF~LSN~vN---------------SGi~-~I~VltQy~~~ 64 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPF---GGKYRIIDFALSNCVN---------------SGIR-RIGVLTQYKSH 64 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccccccc---CceeEEEeEEcccccc---------------cCCC-eEEEEeccchh
Confidence 46778999999999997 5557776655 3431 22322222210 1221 33777877777
Q ss_pred HHHHHHHhhcCCCCCCCC--cEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEE
Q 010950 194 DATRKYFEGHKYFGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDC 271 (497)
Q Consensus 194 ~~t~~~~~~~~~FGl~~~--~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v 271 (497)
...+++.....|++++. .|+++....- .++. .| --|+.+.... + +..+.+-+-+|+.|
T Consensus 65 -SL~~Hi~~G~~w~l~~~~~~v~ilp~~~~----~~~~---------~w-y~Gtadai~Q---n--l~~i~~~~~eyvlI 124 (393)
T COG0448 65 -SLNDHIGRGWPWDLDRKNGGVFILPAQQR----EGGE---------RW-YEGTADAIYQ---N--LLIIRRSDPEYVLI 124 (393)
T ss_pred -HHHHHhhCCCccccccccCcEEEeCchhc----cCCC---------cc-eeccHHHHHH---h--HHHHHhcCCCEEEE
Confidence 78888888777877653 3444432110 1111 12 1244444332 1 33455779999999
Q ss_pred EeCCcccccccCHHHHHHHhhcCCcEEEEEe--ecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCccccc
Q 010950 272 YGVDNALVRVADPTFLGYFIDKGVSAGAKVV--RKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFC 349 (497)
Q Consensus 272 ~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv--~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~ 349 (497)
.+.|-+ .+..--.+|-+|.+.++++++-|. ++..+.+- |++-.. ++| +|+|+.|-|.+.. .+ ..
T Consensus 125 lsgDhI-YkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~f-Gim~~D-~~~--~i~~F~eKp~~~~--~~-------~~ 190 (393)
T COG0448 125 LSGDHI-YKMDYSDMLDFHIESGADVTVAVKEVPREEASRF-GVMNVD-ENG--RIIEFVEKPADGP--PS-------NS 190 (393)
T ss_pred ecCCEE-EecCHHHHHHHHHHcCCCEEEEEEECChHhhhhc-CceEEC-CCC--CEEeeeeccCcCC--cc-------cc
Confidence 999998 566666799999999999975443 33344443 655443 445 6899999886611 00 01
Q ss_pred ccceeeEEEehHHHHHHhhccc
Q 010950 350 WSNVCLHMFTLDFLNQVANGLE 371 (497)
Q Consensus 350 ~gNi~~~~f~l~fL~~~~~~~~ 371 (497)
.+..+++.|+.++|.+++.+..
T Consensus 191 laSMgiYIf~~~~L~~~L~~~~ 212 (393)
T COG0448 191 LASMGIYIFNTDLLKELLEEDA 212 (393)
T ss_pred eeeeeeEEEcHHHHHHHHHHHh
Confidence 4678999999999999987543
No 70
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=97.88 E-value=0.00011 Score=69.86 Aligned_cols=61 Identities=30% Similarity=0.500 Sum_probs=46.8
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHH
Q 010950 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200 (497)
Q Consensus 121 avvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~ 200 (497)
..|+||||.|||||. .||.++++ .|++++++.++.+... ++ =.+++.||. .++.+..++
T Consensus 2 ~aIILAgG~gsRmg~-~~K~Ll~i---~GkplI~~vi~~l~~~---------------~i-~~I~Vv~~~-~~~~~~~~l 60 (183)
T TIGR00454 2 DALIMAGGKGTRLGG-VEKPLIEV---CGRCLIDHVLSPLLKS---------------KV-NNIIIATSP-HTPKTEEYI 60 (183)
T ss_pred eEEEECCccCccCCC-CCceEeEE---CCEEHHHHHHHHHHhC---------------CC-CEEEEEeCC-CHHHHHHHH
Confidence 468999999999975 79999998 7999999999987531 11 133666665 567788888
Q ss_pred hh
Q 010950 201 EG 202 (497)
Q Consensus 201 ~~ 202 (497)
++
T Consensus 61 ~~ 62 (183)
T TIGR00454 61 NS 62 (183)
T ss_pred hh
Confidence 65
No 71
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=97.87 E-value=0.00071 Score=65.07 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=98.7
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
++++|+||||.|+||+ .|.+.++ .||+++++.++.+++.. . +.-++.++ .++.+.+
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l---~Gkpll~~~l~~l~~~~--------------~--~~~IvV~~--~~~~i~~ 56 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL---GGKPLIAWTIEAALESK--------------L--FDRVVVST--DDEEIAE 56 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh---CCccHHHHHHHHHHhCC--------------C--CCEEEEEC--CcHHHHH
Confidence 5789999999999996 4989888 89999999999886411 0 11133333 3566777
Q ss_pred HHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHc--CceEEEEEeCCc
Q 010950 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR--GIKYIDCYGVDN 276 (497)
Q Consensus 199 ~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~--G~~yi~v~~vDN 276 (497)
++.+ +|.. ..+..+. .......|.++..... ++.+... +.+++++++.|+
T Consensus 57 ~~~~---~~~~----~~~~~~~----------------~~~~~~~~~~~~i~~~-----l~~l~~~~~~~d~vlv~~~D~ 108 (223)
T cd02513 57 VARK---YGAE----VPFLRPA----------------ELATDTASSIDVILHA-----LDQLEELGRDFDIVVLLQPTS 108 (223)
T ss_pred HHHH---hCCC----ceeeCCh----------------HHCCCCCCcHHHHHHH-----HHHHHHhCCCCCEEEEeCCCC
Confidence 7764 3321 1121110 0001011222322221 2333332 368999999999
Q ss_pred ccccccCHH-HHHHHhhcCCcEEEEEeecCCCCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceee
Q 010950 277 ALVRVADPT-FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (497)
Q Consensus 277 ~L~~~~Dp~-~lG~~~~~~~~~~~kvv~k~~p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~ 355 (497)
|+....+-. ++..+...+.++.+.+.+.... -..+.... .+| ..++-|.+-... + .++... .| .-|.+.
T Consensus 109 P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~-~~~~~~~~~~~~-~---~q~~~~-~~-~~n~~~ 178 (223)
T cd02513 109 PLRSAEDIDEAIELLLSEGADSVFSVTEFHRF-PWRALGLD--DNG-LEPVNYPEDKRT-R---RQDLPP-AY-HENGAI 178 (223)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEEEEecCcC-cHHheeec--cCC-ceeccCcccccC-C---cCCChh-He-eECCEE
Confidence 975443332 4444545667777666654322 22222221 133 333333221111 1 111111 22 457888
Q ss_pred EEEehHHHHHH
Q 010950 356 HMFTLDFLNQV 366 (497)
Q Consensus 356 ~~f~l~fL~~~ 366 (497)
++++.+++.+.
T Consensus 179 y~~~~~~~~~~ 189 (223)
T cd02513 179 YIAKREALLES 189 (223)
T ss_pred EEEEHHHHHhc
Confidence 99999988653
No 72
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.76 E-value=0.00016 Score=67.23 Aligned_cols=38 Identities=26% Similarity=0.543 Sum_probs=33.9
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHH
Q 010950 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (497)
Q Consensus 120 vavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~ 162 (497)
+++|+||||.|+|||. ||.++++ .||+++++.++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~---~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPL---DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCee---CCeeHHHHHHHHHHh
Confidence 4689999999999986 9999998 899999999998754
No 73
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.70 E-value=7.5e-05 Score=72.98 Aligned_cols=67 Identities=19% Similarity=0.470 Sum_probs=56.2
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHH
Q 010950 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (497)
Q Consensus 120 vavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~ 199 (497)
...|+||+|.|||||-+.||++..+ .|++++.+++++|.. .++ --.+|.|+++..+...+|
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev---~gr~ii~~~i~~L~~---------------~gi-~e~vvV~~g~~~~lve~~ 64 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEV---GGREIIYRTIENLAK---------------AGI-TEFVVVTNGYRADLVEEF 64 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhc---CCeEeHHHHHHHHHH---------------cCC-ceEEEEeccchHHHHHHH
Confidence 3579999999999999999999777 699999999998753 122 234899999999999999
Q ss_pred HhhcCC
Q 010950 200 FEGHKY 205 (497)
Q Consensus 200 ~~~~~~ 205 (497)
+.++++
T Consensus 65 l~~~~~ 70 (239)
T COG1213 65 LKKYPF 70 (239)
T ss_pred HhcCCc
Confidence 998763
No 74
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=97.65 E-value=0.00038 Score=65.14 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=32.2
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHH
Q 010950 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (497)
Q Consensus 122 vvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~ 162 (497)
+|+||||.|+||| .||.++++ .|++++++.++++++
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~---~g~pll~~~i~~l~~ 37 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY---KGKTILEHVVDNALR 37 (188)
T ss_pred eEEECCCCcccCC--CCceeccc---CCeeHHHHHHHHHHH
Confidence 6899999999998 58999888 799999999988753
No 75
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=97.61 E-value=0.00011 Score=71.85 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=49.8
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
.+++|+||||.|+|||.+.||.++++ .|++++++.++++... ..+ -.++|.|+........+
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~l~~l---~gkpll~~~i~~~~~~--------------~~~-~~ivVv~~~~~~~~~~~ 63 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKMWLDL---VGEPIFIHALRPFLAD--------------NRC-SKIIIVTQAQERKHVQD 63 (230)
T ss_pred ceEEEEECCeeccccCCCCCcceeEE---CCeEHHHHHHHHHHcC--------------CCC-CEEEEEeChhhHHHHHH
Confidence 36899999999999998889999998 8999999999987531 011 13466676655566666
Q ss_pred HHhh
Q 010950 199 YFEG 202 (497)
Q Consensus 199 ~~~~ 202 (497)
++++
T Consensus 64 ~~~~ 67 (230)
T PRK13385 64 LMKQ 67 (230)
T ss_pred HHHh
Confidence 6665
No 76
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.60 E-value=0.00012 Score=71.73 Aligned_cols=65 Identities=23% Similarity=0.439 Sum_probs=49.3
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHH
Q 010950 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (497)
Q Consensus 120 vavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~ 199 (497)
|++|+||||.|+|||.+.||-.+++ .||+++++.++.+.+. ..+. .+++.++....+.++++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l---~Gkpvl~~tl~~f~~~--------------~~i~-~Ivvv~~~~~~~~~~~~ 62 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLEL---GGKPVLEYTLEAFLAS--------------PEID-EIVVVVPPEDIDYVEEL 62 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEE---TTEEHHHHHHHHHHTT--------------TTES-EEEEEESGGGHHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEE---CCeEeHHHHHHHHhcC--------------CCCC-eEEEEecchhHHHHHHh
Confidence 6899999999999999999999988 8999999999987531 1111 23666666667888887
Q ss_pred Hhh
Q 010950 200 FEG 202 (497)
Q Consensus 200 ~~~ 202 (497)
+.+
T Consensus 63 ~~~ 65 (221)
T PF01128_consen 63 LSK 65 (221)
T ss_dssp HHH
T ss_pred hcC
Confidence 776
No 77
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=97.46 E-value=0.00024 Score=70.94 Aligned_cols=42 Identities=26% Similarity=0.483 Sum_probs=37.8
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHH
Q 010950 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~ 162 (497)
.++++|+||||.|||||.+.||.++++ .|++++++.++.+..
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l---~Gkpll~~tl~~~~~ 64 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPL---LGQPIALYSLYTFAR 64 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEE---CCeEHHHHHHHHHHh
Confidence 368999999999999999899999998 899999999987753
No 78
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=97.46 E-value=0.0008 Score=64.63 Aligned_cols=40 Identities=30% Similarity=0.653 Sum_probs=35.7
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHH
Q 010950 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (497)
Q Consensus 120 vavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~ 162 (497)
+++|+||||.|+|||...||.++++ .|+|++++.++++..
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i---~Gkpll~~~i~~l~~ 40 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL---GGKPVLEHTLEAFLA 40 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE---CCeEHHHHHHHHHhc
Confidence 4679999999999998789999998 899999999998753
No 79
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=97.45 E-value=0.005 Score=60.84 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=98.7
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHHh
Q 010950 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (497)
Q Consensus 122 vvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~~ 201 (497)
+|++|+|.||||+ +|.++++ .||+++++.++++.+. ++. .++|-|. ++.+.+.++
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l---~GkPli~~~le~~~~~---------------~~d-~VvVvt~---~~~i~~~~~ 56 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI---FGKPMIVHVAENANES---------------GAD-RCIVATD---DESVAQTCQ 56 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc---CCcCHHHHHHHHHHhC---------------CCC-eEEEEeC---HHHHHHHHH
Confidence 6899999999994 7999888 8999999999986431 111 2245443 355777776
Q ss_pred hcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCcccccc
Q 010950 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 281 (497)
Q Consensus 202 ~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~~~ 281 (497)
+ ||.. +. +. . ...+.|...+..++.. +.....+++.+++.|.+|+
T Consensus 57 ~---~g~~---~v-~~-~-------------------~~~~~Gt~r~~~~~~~------l~~~~~d~Vli~~gD~Pli-- 101 (238)
T TIGR00466 57 K---FGIE---VC-MT-S-------------------KHHNSGTERLAEVVEK------LALKDDERIVNLQGDEPFI-- 101 (238)
T ss_pred H---cCCE---EE-Ee-C-------------------CCCCChhHHHHHHHHH------hCCCCCCEEEEEcCCcCcC--
Confidence 4 4432 11 11 0 0113344444444321 1112357899999999975
Q ss_pred cCHHHHHHHh----hcCCcEEEEEeecCCCCC-----ccceEEEecCCCCeEEEEeccC--Chhhhhhcc-ccCCcc-cc
Q 010950 282 ADPTFLGYFI----DKGVSAGAKVVRKAYPQE-----KVGVFVRRGKGGPLTVVEYSEL--DPSLASAIN-QETGRL-RF 348 (497)
Q Consensus 282 ~Dp~~lG~~~----~~~~~~~~kvv~k~~p~e-----~vGvi~~~~~~g~~~vvEYsel--~~~~~~~~~-~~~g~~-~f 348 (497)
+|..|--++ ..+.++++-+++..++.+ .+-+++ . .+|+ ..-++.- |- .+.... ..+... .|
T Consensus 102 -~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~-~-~~g~--alyfsr~~ip~-~R~~~~~~~tpq~~~~ 175 (238)
T TIGR00466 102 -PKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVL-D-SQGY--ALYFSRSLIPF-DRDFFAKRQTPVGDNL 175 (238)
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEe-C-CCCe--EEEecCCCCCC-CCCcccccccccccce
Confidence 444444333 344677766666555333 222222 2 2453 2112221 10 011000 001111 12
Q ss_pred cccceeeEEEehHHHHHHhh
Q 010950 349 CWSNVCLHMFTLDFLNQVAN 368 (497)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~ 368 (497)
..|++++-|+.++|++...
T Consensus 176 -~~h~Giy~~~~~~L~~~~~ 194 (238)
T TIGR00466 176 -LRHIGIYGYRAGFIEEYVA 194 (238)
T ss_pred -eEEEEEEeCCHHHHHHHHh
Confidence 4599999999999999874
No 80
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=97.39 E-value=0.0015 Score=62.62 Aligned_cols=37 Identities=22% Similarity=0.520 Sum_probs=34.1
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~ 161 (497)
....|+||||+|+|| .+|+++++ .|++++++.++++.
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~---~g~~lie~v~~~L~ 40 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPL---NGRPLIEHVIDRLR 40 (192)
T ss_pred CceEEEecCCccccc---ccccccee---CCeEHHHHHHHHhc
Confidence 567899999999999 78999998 99999999999985
No 81
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=97.36 E-value=0.0011 Score=62.64 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=31.8
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHH
Q 010950 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (497)
Q Consensus 121 avvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~ 161 (497)
++|+||||.|+|||. +|.++++ .|++++++.++.++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~~~ 37 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL---GETTLGSASLKTAL 37 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee---CCccHHHHHHHHHH
Confidence 479999999999986 7999888 89999999998764
No 82
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.26 E-value=0.0017 Score=68.34 Aligned_cols=39 Identities=26% Similarity=0.505 Sum_probs=35.1
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~ 161 (497)
++++|+||||+||||| ..||.++++ .|+|++++.++++.
T Consensus 5 ~i~~VILAgG~s~Rmg-g~~K~ll~i---~Gkpll~~~i~~l~ 43 (366)
T PRK14489 5 QIAGVILAGGLSRRMN-GRDKALILL---GGKPLIERVVDRLR 43 (366)
T ss_pred CceEEEEcCCcccCCC-CCCCceeEE---CCeeHHHHHHHHHH
Confidence 6889999999999996 369999988 79999999999874
No 83
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=97.18 E-value=0.00055 Score=65.96 Aligned_cols=39 Identities=28% Similarity=0.619 Sum_probs=34.9
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHH
Q 010950 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (497)
Q Consensus 121 avvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~ 162 (497)
++|+||||.|||||.+.||.++++ .|++++++.++++..
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l---~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLEL---GGRPLLEHTLDAFLA 39 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEE---CCeEHHHHHHHHHhc
Confidence 368999999999998889999998 799999999998753
No 84
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.16 E-value=0.00086 Score=62.81 Aligned_cols=60 Identities=30% Similarity=0.569 Sum_probs=46.7
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHH
Q 010950 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200 (497)
Q Consensus 121 avvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~ 200 (497)
.+|+||||+|||||. .=|.++++ +||+++.+.++.+.. .+ -.| ++-||.+| ..|++|+
T Consensus 2 ~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~---~~------------d~i--~v~isp~t-p~t~~~~ 59 (177)
T COG2266 2 MAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRK---IV------------DEI--IVAISPHT-PKTKEYL 59 (177)
T ss_pred ceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHh---hc------------CcE--EEEeCCCC-HhHHHHH
Confidence 479999999999997 56888888 999999999887754 21 124 66677655 7788998
Q ss_pred hh
Q 010950 201 EG 202 (497)
Q Consensus 201 ~~ 202 (497)
.+
T Consensus 60 ~~ 61 (177)
T COG2266 60 ES 61 (177)
T ss_pred Hh
Confidence 87
No 85
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=97.08 E-value=0.01 Score=62.76 Aligned_cols=41 Identities=22% Similarity=0.441 Sum_probs=37.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~ 162 (497)
++++|+||||.|||||...||.++++ .|++++++.++.+.+
T Consensus 5 ~v~aIILAAG~GsRmg~~~pKqll~l---~GkPll~~tl~~l~~ 45 (378)
T PRK09382 5 DISLVIVAAGRSTRFSAEVKKQWLRI---GGKPLWLHVLENLSS 45 (378)
T ss_pred cceEEEECCCCCccCCCCCCeeEEEE---CCeeHHHHHHHHHhc
Confidence 67899999999999998899999998 899999999988753
No 86
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.07 E-value=0.00056 Score=65.45 Aligned_cols=40 Identities=28% Similarity=0.577 Sum_probs=35.3
Q ss_pred CCCEEEEEecCCCccccCCCCCCccccccCCCC-CChHHHHHHHHH
Q 010950 117 DGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSG-KSLFQLQAERIL 161 (497)
Q Consensus 117 ~gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sg-ksllq~~~e~i~ 161 (497)
..++++|+||||+|+||| .+|.++++ .| +|++++.++++.
T Consensus 6 ~~~i~~vILAgG~s~RmG--~~K~ll~~---~g~~~ll~~~i~~l~ 46 (196)
T PRK00560 6 IDNIPCVILAGGKSSRMG--ENKALLPF---GSYSSLLEYQYTRLL 46 (196)
T ss_pred ccCceEEEECCcccccCC--CCceEEEe---CCCCcHHHHHHHHHH
Confidence 357899999999999997 48999888 78 999999999875
No 87
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=97.07 E-value=0.0031 Score=62.05 Aligned_cols=66 Identities=24% Similarity=0.368 Sum_probs=52.5
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
.++.+|++|+|.|||||.+.||-.+++ .|+++|++.++.++... .-=.++|.++...+....
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~l~l---~g~pll~~tl~~f~~~~---------------~i~~Ivvv~~~~~~~~~~ 64 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQYLEL---GGRPLLEHTLEAFLESP---------------AIDEIVVVVSPEDDPYFE 64 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceEEEE---CCEEehHHHHHHHHhCc---------------CCCeEEEEEChhhhHHHH
Confidence 478899999999999999999999998 99999999998875411 111347777776777777
Q ss_pred HHHh
Q 010950 198 KYFE 201 (497)
Q Consensus 198 ~~~~ 201 (497)
++..
T Consensus 65 ~~~~ 68 (230)
T COG1211 65 KLPK 68 (230)
T ss_pred Hhhh
Confidence 7775
No 88
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=96.97 E-value=0.0014 Score=63.72 Aligned_cols=41 Identities=24% Similarity=0.572 Sum_probs=37.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~ 162 (497)
++++|+||||.|||||...||.++++ .|++++++.++++.+
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~---~g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPL---GGKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEE---CCEEHHHHHHHHHHc
Confidence 67899999999999998889999998 799999999998753
No 89
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=96.93 E-value=0.014 Score=56.94 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=42.0
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCc-hHHHHHHH
Q 010950 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFT-DDATRKYF 200 (497)
Q Consensus 122 vvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t-~~~t~~~~ 200 (497)
+|+||||.++||| +|.+.++ .|++++++.++.+... ..+. .++|-|+..- ++.+.+++
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l---~Gkpli~~~i~~l~~~--------------~~~~-~ivVv~~~~~~~~~i~~~~ 60 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPL---GGKPLLEHLLDRLKRS--------------KLID-EIVIATSTNEEDDPLEALA 60 (233)
T ss_pred EEEeeCCCCCCCC---CCccccc---CCccHHHHHHHHHHhC--------------CCCC-eEEEECCCCcccHHHHHHH
Confidence 4889999999995 5999888 8999999999887531 0011 3355555443 26677776
Q ss_pred hh
Q 010950 201 EG 202 (497)
Q Consensus 201 ~~ 202 (497)
..
T Consensus 61 ~~ 62 (233)
T cd02518 61 KK 62 (233)
T ss_pred HH
Confidence 53
No 90
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=96.87 E-value=0.00083 Score=62.68 Aligned_cols=37 Identities=30% Similarity=0.568 Sum_probs=33.2
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHH
Q 010950 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (497)
Q Consensus 121 avvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~ 162 (497)
+.|+||||.|+|||. ||.++++ .|++++++.++++..
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~ 38 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLEL---GGKPLLEHVLERLKP 38 (181)
T ss_pred cEEEECCCccccCCC--CceeeEE---CCEEHHHHHHHHHHh
Confidence 579999999999986 9999988 799999999998754
No 91
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=96.86 E-value=0.03 Score=60.98 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=109.1
Q ss_pred CEEEEEecCCCccccC----CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchH
Q 010950 119 KLAVLLLSGGQGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (497)
Q Consensus 119 kvavvlLAGG~GTRLG----~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~ 194 (497)
++-.|+||||.||||- ...||.+.|+ -.++|+||..++|+..+ +..=++ |.|+..-.+
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l--~~~~sllq~t~~r~~~~---------------~~~~~i-ivt~~~~~~ 66 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCL--KGDLTMLQTTICRLNGV---------------ECESPV-VICNEQHRF 66 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeEC--CCCCCHHHHHHHHHHhC---------------CCCCcE-EEeCHHHHH
Confidence 4678999999999995 3359999776 23589999999987542 112233 558877777
Q ss_pred HHHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHc--C-ceEEEE
Q 010950 195 ATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR--G-IKYIDC 271 (497)
Q Consensus 195 ~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~--G-~~yi~v 271 (497)
.+++-+.+.+. ... +++++ |..--++|. -.+.+++ +.++ + -.-+.|
T Consensus 67 ~v~~ql~~~~~---~~~-----------------~ii~E-P~~rnTApa---ialaa~~-------~~~~~~~~~~~v~v 115 (478)
T PRK15460 67 IVAEQLRQLNK---LTE-----------------NIILE-PAGRNTAPA---IALAALA-------AKRHSPESDPLMLV 115 (478)
T ss_pred HHHHHHHhcCC---ccc-----------------cEEec-CCCCChHHH---HHHHHHH-------HHHhcCCCCCeEEE
Confidence 77777765221 011 22222 111112222 1222221 1222 2 256888
Q ss_pred EeCCcccccccCHHHHH-----HH-hhcCCcEEEEEeecCCCCCccceEEEecC------CCCeEEEEeccCChh-hhhh
Q 010950 272 YGVDNALVRVADPTFLG-----YF-IDKGVSAGAKVVRKAYPQEKVGVFVRRGK------GGPLTVVEYSELDPS-LASA 338 (497)
Q Consensus 272 ~~vDN~L~~~~Dp~~lG-----~~-~~~~~~~~~kvv~k~~p~e~vGvi~~~~~------~g~~~vvEYsel~~~-~~~~ 338 (497)
...|... ... ..|.. .. ++.+.-+++-+.+ +.|...=|-|-.-.. .+-..|..+.|-|+. .+..
T Consensus 116 lPaDH~I-~d~-~~F~~~i~~A~~~A~~~~lvt~GI~P-t~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~ 192 (478)
T PRK15460 116 LAADHVI-ADE-DAFRAAVRNAMPYAEAGKLVTFGIVP-DLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQA 192 (478)
T ss_pred ecccccc-CCH-HHHHHHHHHHHHHHhcCCEEEEecCC-CCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHH
Confidence 9999863 221 22332 21 2234434444444 556666676654211 033567788888885 3333
Q ss_pred ccccCCcccccccceeeEEEehHHHHHHhhc
Q 010950 339 INQETGRLRFCWSNVCLHMFTLDFLNQVANG 369 (497)
Q Consensus 339 ~~~~~g~~~f~~gNi~~~~f~l~fL~~~~~~ 369 (497)
.- ++|. -|| |.++++|+.+.+-+.++.
T Consensus 193 yl-~~G~-y~W--NsGiF~~~a~~~l~~~~~ 219 (478)
T PRK15460 193 YV-ASGE-YYW--NSGMFLFRAGRYLEELKK 219 (478)
T ss_pred HH-HcCC-EEE--ecceeheeHHHHHHHHHH
Confidence 22 3453 235 999999999888666654
No 92
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=96.81 E-value=0.0011 Score=62.17 Aligned_cols=38 Identities=32% Similarity=0.634 Sum_probs=33.5
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHH
Q 010950 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (497)
Q Consensus 120 vavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~ 161 (497)
+++|+||||.|||||. .||.++++ .|+|++++.++++.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i---~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL---GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE---CCEEHHHHHHHHHH
Confidence 3689999999999984 39999998 89999999999874
No 93
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.80 E-value=0.0012 Score=63.44 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=34.4
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~ 161 (497)
+++.|+||||+|+|||. +|.++++ .|+|++++.++.+.
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~ 44 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPW---QGVPLLQRVARIAA 44 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEE---CCEeHHHHHHHHHH
Confidence 67899999999999985 7999998 79999999999874
No 94
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=96.76 E-value=0.0014 Score=62.09 Aligned_cols=39 Identities=33% Similarity=0.599 Sum_probs=34.7
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHH
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~ 161 (497)
++.+|+||||.|+|||. .||.++++ .|+|++++.++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~~-~~K~ll~~---~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMGG-VDKGLQEL---NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCCC-CCCceeEE---CCEEHHHHHHHHHh
Confidence 67899999999999962 58999998 89999999999874
No 95
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.69 E-value=0.047 Score=55.97 Aligned_cols=198 Identities=18% Similarity=0.214 Sum_probs=110.3
Q ss_pred EEEEEecCCCcccc----CCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHH
Q 010950 120 LAVLLLSGGQGTRL----GSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (497)
Q Consensus 120 vavvlLAGG~GTRL----G~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~ 195 (497)
+.-|+||||.|||| ....||-.++ |..++|+||..++|+..+.. . -.+++.|+..-...
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~--L~~~~Sllq~T~~R~~~l~~--------------~-~~~~vVtne~~~f~ 64 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLK--LFGDLSLLQQTVKRLAFLGD--------------I-EEPLVVTNEKYRFI 64 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCcccee--eCCCCcHHHHHHHHHhhcCC--------------c-cCeEEEeCHHHHHH
Confidence 35689999999999 4677999854 56699999999999865321 1 23366677666666
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCC
Q 010950 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (497)
Q Consensus 196 t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vD 275 (497)
+++=|.+-+.- + ..+ ++++.-.+ -++|. =.+.++. -....|-.-+.|+-.|
T Consensus 65 v~eql~e~~~~-----~-------------~~~-illEP~gR-nTApA---IA~aa~~------~~~~~~d~~~lVlpsD 115 (333)
T COG0836 65 VKEQLPEIDIE-----N-------------AAG-IILEPEGR-NTAPA---IALAALS------ATAEGGDALVLVLPSD 115 (333)
T ss_pred HHHHHhhhhhc-----c-------------ccc-eEeccCCC-CcHHH---HHHHHHH------HHHhCCCcEEEEecCc
Confidence 66666541110 0 011 22221110 12221 1122221 1233444457888888
Q ss_pred cccccccCHHHHHH------HhhcCCcEEEEEeecCCCCCccceEEEec---CCCCeEEEEeccCChhhhhhccccCCcc
Q 010950 276 NALVRVADPTFLGY------FIDKGVSAGAKVVRKAYPQEKVGVFVRRG---KGGPLTVVEYSELDPSLASAINQETGRL 346 (497)
Q Consensus 276 N~L~~~~Dp~~lG~------~~~~~~~~~~kvv~k~~p~e~vGvi~~~~---~~g~~~vvEYsel~~~~~~~~~~~~g~~ 346 (497)
-.. . ....|.-- .++++.-+.+-+++.+ |.-.=|-|-.-. ..+-+.|-.+-|-|+.......-+.|++
T Consensus 116 H~I-~-d~~af~~av~~A~~~A~~g~lVTfGI~Pt~-PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y 192 (333)
T COG0836 116 HVI-A-DEEAFLNAVKKAEKAAEEGGIVTFGIPPTR-PETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEY 192 (333)
T ss_pred cee-c-cHHHHHHHHHHHHHHHHcCCEEEEecCCCC-CccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCce
Confidence 763 2 22233331 2335555556666654 544446554411 0146778889999985433222245654
Q ss_pred cccccceeeEEEehHHHHHHhhc
Q 010950 347 RFCWSNVCLHMFTLDFLNQVANG 369 (497)
Q Consensus 347 ~f~~gNi~~~~f~l~fL~~~~~~ 369 (497)
. | |.++++|+.+.+-+.++.
T Consensus 193 ~-W--NSGmF~Fra~~~l~e~~~ 212 (333)
T COG0836 193 L-W--NSGMFLFRASVFLEELKK 212 (333)
T ss_pred E-e--eccceEEEHHHHHHHHHh
Confidence 3 3 888899998776555543
No 96
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=96.60 E-value=0.0021 Score=67.18 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=34.9
Q ss_pred CCCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHH
Q 010950 117 DGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (497)
Q Consensus 117 ~gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~ 161 (497)
++.+..|+||||+|+||| .+|.++++ .|++++++.++++.
T Consensus 158 ~~~i~~IILAGGkSsRMG--~dKaLL~~---~GkpLl~~~ie~l~ 197 (346)
T PRK14500 158 QTPLYGLVLTGGKSRRMG--KDKALLNY---QGQPHAQYLYDLLA 197 (346)
T ss_pred CCCceEEEEeccccccCC--CCccccee---CCccHHHHHHHHHH
Confidence 346789999999999998 59999988 79999999888764
No 97
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.55 E-value=0.0039 Score=65.64 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=34.8
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHH
Q 010950 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~ 161 (497)
-+++.|+||||+|+|||. +|.++++ .|++++++.++++.
T Consensus 173 ~~i~~iILAGG~SsRmG~--~K~ll~~---~Gk~ll~~~l~~l~ 211 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMGS--DKALLSY---HESNQLVHTAALLR 211 (369)
T ss_pred CCceEEEEcCCccccCCC--CcEEEEE---CCccHHHHHHHHHH
Confidence 467899999999999984 8999998 79999999988874
No 98
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=96.04 E-value=0.2 Score=50.45 Aligned_cols=161 Identities=20% Similarity=0.226 Sum_probs=93.6
Q ss_pred EEEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHH
Q 010950 121 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (497)
Q Consensus 121 avvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~ 197 (497)
-+|+.|.|+|||+= -..||=|+|| -+|+..|+.++...+ .+.. -++|.|+. +...+.
T Consensus 6 KAViPaAGlGTRfLPATKaiPKEMLPI---vdKP~IqYiVeEa~~---------------aGIe-~i~iVTgr-~K~~Ie 65 (291)
T COG1210 6 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYIVEEAVA---------------AGIE-EILIVTGR-GKRAIE 65 (291)
T ss_pred EEEEEccCcccccccccccCchhhccc---cCchhHHHHHHHHHH---------------cCCC-EEEEEecC-CcchHH
Confidence 36889999999984 4569999999 889999999997643 1222 23555554 344666
Q ss_pred HHHhh----------cC---------CCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHH
Q 010950 198 KYFEG----------HK---------YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLL 258 (497)
Q Consensus 198 ~~~~~----------~~---------~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l 258 (497)
++|.. .+ .. -+..+++|..|.. |.|-|+.-..-+
T Consensus 66 DhFD~s~ELE~~L~~~~K~~~L~~v~~i-~~~~~i~~vRQ~e---------------------~~GLGhAVl~A~----- 118 (291)
T COG1210 66 DHFDTSYELENTLEKRGKRELLEEVRSI-PPLVTISFVRQKE---------------------PLGLGHAVLCAK----- 118 (291)
T ss_pred HhCcCcHHHHHHHHHhCHHHHHHHHHhc-ccCceEEEEecCC---------------------CCcchhHHHhhh-----
Confidence 66633 11 11 1123455555553 778888776533
Q ss_pred HHHHHcCceEEEEEeCCcccccccCHH---HHHHHhhcCC-cEEEEEeecCCCCCccceEEEe--cCCCCeEEEEeccCC
Q 010950 259 EDMATRGIKYIDCYGVDNALVRVADPT---FLGYFIDKGV-SAGAKVVRKAYPQEKVGVFVRR--GKGGPLTVVEYSELD 332 (497)
Q Consensus 259 ~~l~~~G~~yi~v~~vDN~L~~~~Dp~---~lG~~~~~~~-~~~~kvv~k~~p~e~vGvi~~~--~~~g~~~vvEYsel~ 332 (497)
.|. |-+-+.|.--|-++ ...-|. ++-...+.+. -++.+-|++.....+ ||+..- ..++-++|...-|-|
T Consensus 119 -~~v--g~EpFaVlL~Ddl~-~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~v~kY-Gvi~~g~~~~~~~~~v~~~VEKP 193 (291)
T COG1210 119 -PFV--GDEPFAVLLPDDLV-DSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKY-GVIDPGEPVEKGVYKVKGMVEKP 193 (291)
T ss_pred -hhc--CCCceEEEeCCeee-cCCchHHHHHHHHHHHhCCcEEEEEECCHHHCccc-ceEecCccccCCeEEEEEEEECC
Confidence 233 66755555555553 222333 3333344444 446666665555544 887621 113446777777766
Q ss_pred h
Q 010950 333 P 333 (497)
Q Consensus 333 ~ 333 (497)
+
T Consensus 194 ~ 194 (291)
T COG1210 194 K 194 (291)
T ss_pred C
Confidence 3
No 99
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=95.60 E-value=0.015 Score=55.36 Aligned_cols=60 Identities=22% Similarity=0.443 Sum_probs=45.2
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHH
Q 010950 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (497)
Q Consensus 122 vvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~ 198 (497)
+|+||.|+|||+- .+.||+++.| .|+++++.++++++. . .|-=++...++-++.. +
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~e---------------~--gI~dI~IVvGYlkE~F-e 61 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLRE---------------A--GIDDITIVVGYLKEQF-E 61 (231)
T ss_pred eEEEecccccccccccccCChHHHHh---cCcccHHHHHHHHHH---------------C--CCceEEEEeeehHHHH-H
Confidence 6899999999974 8889999998 999999999999853 1 1222344447777766 4
Q ss_pred HHhh
Q 010950 199 YFEG 202 (497)
Q Consensus 199 ~~~~ 202 (497)
||++
T Consensus 62 YLkd 65 (231)
T COG4750 62 YLKD 65 (231)
T ss_pred HHHH
Confidence 5554
No 100
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=93.84 E-value=1.2 Score=43.46 Aligned_cols=181 Identities=12% Similarity=0.128 Sum_probs=97.5
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHHh
Q 010950 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (497)
Q Consensus 122 vvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~~ 201 (497)
+|++|.|.++||+ .|-+.++ .|++++++.++.+++. +. +-.++.+++ ++++.++.+
T Consensus 2 aiIpArG~Skr~~---~Knl~~l---~GkpLi~~ti~~a~~s---------------~~-~d~IvVstd--~~~i~~~a~ 57 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPF---CGKPMIAYSIEAALNS---------------GL-FDKVVVSTD--DEEIAEVAK 57 (222)
T ss_pred EEEccCCCCCCCC---Cccchhc---CCcCHHHHHHHHHHhC---------------CC-CCEEEEeCC--CHHHHHHHH
Confidence 5788999999995 4888777 8999999999987541 11 122333443 367777777
Q ss_pred hcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHH-cCceEEEEEeCCccccc
Q 010950 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT-RGIKYIDCYGVDNALVR 280 (497)
Q Consensus 202 ~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~-~G~~yi~v~~vDN~L~~ 280 (497)
+ +|. .|. |.- | ..++..-.|..++.... ++.+.. ...+++.+.+.|.||..
T Consensus 58 ~---~g~---~v~-~~r---~-------------~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl~~ 109 (222)
T TIGR03584 58 S---YGA---SVP-FLR---P-------------KELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPFLQ 109 (222)
T ss_pred H---cCC---EeE-EeC---h-------------HHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCcCC
Confidence 5 343 121 210 1 11111111223333322 233322 34688999999999865
Q ss_pred ccCHH-HHHHHhhcCCcEEEEEeecCC-CCCccceEEEecCCCCeEEEEeccCChhhhhhccccCCcccccccceeeEEE
Q 010950 281 VADPT-FLGYFIDKGVSAGAKVVRKAY-PQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (497)
Q Consensus 281 ~~Dp~-~lG~~~~~~~~~~~kvv~k~~-p~e~vGvi~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~~~f~~gNi~~~~f 358 (497)
..|-. .+....+.+++....|++... |... . .. .++|++...-...... ..++- .+...-|-+.+++
T Consensus 110 ~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~--~-~~-~~~g~~~~~~~~~~~~-----~rQd~--~~~y~~nga~y~~ 178 (222)
T TIGR03584 110 AKILKEAFELLKQPNAHFVFSVTSFAFPIQRA--F-KL-KENGGVEMFFPEHFNT-----RSQDL--EEAYHDAGQFYWG 178 (222)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeccCCChHHh--e-EE-CCCCcEEecCCCcccC-----CCCCC--chheeeCCeEEEE
Confidence 54443 344445567899988887542 3221 1 11 1245443322111110 11111 1222457788999
Q ss_pred ehHHHHH
Q 010950 359 TLDFLNQ 365 (497)
Q Consensus 359 ~l~fL~~ 365 (497)
+.+.+.+
T Consensus 179 ~~~~~~~ 185 (222)
T TIGR03584 179 KSQAWLE 185 (222)
T ss_pred EHHHHHh
Confidence 9988753
No 101
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=93.32 E-value=0.11 Score=49.99 Aligned_cols=119 Identities=24% Similarity=0.278 Sum_probs=74.5
Q ss_pred CCCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHH
Q 010950 117 DGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (497)
Q Consensus 117 ~gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t 196 (497)
...++.|+||.|.||||| .+|-++|+ .|+++..+.+++.+. .+.. .+++.|+....+..
T Consensus 3 ~~~v~~VvLAAGrssRmG--~~KlLap~---~g~plv~~~~~~a~~---------------a~~~-~vivV~g~~~~~~~ 61 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG--QPKLLAPL---DGKPLVRASAETALS---------------AGLD-RVIVVTGHRVAEAV 61 (199)
T ss_pred CcceEEEEEcccccccCC--Ccceeccc---CCCcHHHHHHHHHHh---------------cCCC-eEEEEeCcchhhHH
Confidence 358999999999999999 68999998 999999999998743 1111 23677776644444
Q ss_pred HHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCc
Q 010950 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (497)
Q Consensus 197 ~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN 276 (497)
...... . .+++.. .|+=.=|+-.+|+. | +......+ ..+++...|.
T Consensus 62 ~a~~~~-----~---~~~~v~-----------------------npd~~~Gls~Sl~a-g-~~a~~~~~-~~v~~~lgDm 107 (199)
T COG2068 62 EALLAQ-----L---GVTVVV-----------------------NPDYAQGLSTSLKA-G-LRAADAEG-DGVVLMLGDM 107 (199)
T ss_pred Hhhhcc-----C---CeEEEe-----------------------CcchhhhHhHHHHH-H-HHhcccCC-CeEEEEeCCC
Confidence 444432 1 222221 12111223333322 1 22233333 6999999999
Q ss_pred ccccccCHHHHHHH
Q 010950 277 ALVRVADPTFLGYF 290 (497)
Q Consensus 277 ~L~~~~Dp~~lG~~ 290 (497)
+.+...+..-|...
T Consensus 108 P~V~~~t~~rl~~~ 121 (199)
T COG2068 108 PQVTPATVRRLIAA 121 (199)
T ss_pred CCCCHHHHHHHHHh
Confidence 98888887655544
No 102
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=82.27 E-value=5.1 Score=39.53 Aligned_cols=90 Identities=30% Similarity=0.365 Sum_probs=62.0
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHH-----------HHHHHhhhcCCCCCCCcceeEEEe
Q 010950 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCV-----------QRLAAQVTSEGGGSGSAAIHWYIM 187 (497)
Q Consensus 119 kvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l-----------~~l~~~~~~~~~~~~~~~ipl~IM 187 (497)
+..+||.|-=..|||-- |.+-+| .|++++++.++|..+- ++.+..... .+.. ++|
T Consensus 3 ~~~viIPAR~~STRLpg---KPLadI---~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~-----~G~~---avm 68 (247)
T COG1212 3 KFVVIIPARLASTRLPG---KPLADI---GGKPMIVRVAERALKSGADRVVVATDDERIAEAVQA-----FGGE---AVM 68 (247)
T ss_pred ceEEEEecchhcccCCC---Cchhhh---CCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-----hCCE---EEe
Confidence 67899999888999832 556666 9999999999998632 111111111 2222 799
Q ss_pred cCCCc---hHHHHHHHhhcCCCCCCCCcEEEEEcCCcceee
Q 010950 188 TSPFT---DDATRKYFEGHKYFGLESDQVTFFQQGTIPCVS 225 (497)
Q Consensus 188 TS~~t---~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~ 225 (497)
||.+- .+.+.+.+++ .+++.+.+.+-.|+..|++.
T Consensus 69 T~~~h~SGTdR~~Ev~~~---l~~~~~~iIVNvQGDeP~i~ 106 (247)
T COG1212 69 TSKDHQSGTDRLAEVVEK---LGLPDDEIIVNVQGDEPFIE 106 (247)
T ss_pred cCCCCCCccHHHHHHHHh---cCCCcceEEEEccCCCCCCC
Confidence 99964 4555566665 55566789999999999775
No 103
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=81.56 E-value=8.6 Score=41.97 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=47.7
Q ss_pred CCCCCCcEEEEEcCC---cceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccccccc
Q 010950 206 FGLESDQVTFFQQGT---IPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVA 282 (497)
Q Consensus 206 FGl~~~~v~~f~Q~~---~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L~~~~ 282 (497)
||.. =+|.|=.|.. -.++|.++.....+.+++.--|.|||.+..-|. +..-.-|+|=||||+.....
T Consensus 230 ~~v~-f~IsfS~Qk~sTDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNLN---------~ldaDiIFIKNIDNVvpd~~ 299 (513)
T PF14134_consen 230 YGVK-FEISFSEQKPSTDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENLN---------DLDADIIFIKNIDNVVPDRL 299 (513)
T ss_pred hCce-EEEEecccCCCCCeeEECCCCCccCCCCCCEEeCCCcchHHHhhhc---------cccCCEEEEeCccccCCccc
Confidence 5543 2566666653 235677777777777888888999998776653 44678899999999954333
No 104
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=72.95 E-value=64 Score=31.93 Aligned_cols=118 Identities=21% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCC-chHHH
Q 010950 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF-TDDAT 196 (497)
Q Consensus 118 gkvavvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~-t~~~t 196 (497)
+++++|+=|-=-.|||-- |.+.|+ -+.++++++++++++-..+ =.++|-||.. +++.+
T Consensus 2 ~~I~~IiQARmgStRLpg---KvLlpL---~~~pmI~~~lervrks~~~---------------d~ivvATS~~~~d~~l 60 (241)
T COG1861 2 SMILVIIQARMGSTRLPG---KVLLPL---GGEPMIEYQLERVRKSKDL---------------DKIVVATSDKEEDDAL 60 (241)
T ss_pred CcEEEEeeecccCccCCc---chhhhc---CCCchHHHHHHHHhccccc---------------cceEEEecCCcchhHH
Confidence 467777776544555522 778888 8899999999998753222 1348899985 67778
Q ss_pred HHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCc-hhhHhhhhccHHHHHHHcCceEEEEEeCC
Q 010950 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNG-GVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (497)
Q Consensus 197 ~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG-gi~~aL~~sg~l~~l~~~G~~yi~v~~vD 275 (497)
.++..++.+ .+|. + .+ ++..-. ..-..+.+...|.=.-.|
T Consensus 61 ~~~~~~~G~--------~vfr-G-------------------------s~~dVL~Rf-----~~a~~a~~~~~VVRvTGD 101 (241)
T COG1861 61 EEVCRSHGF--------YVFR-G-------------------------SEEDVLQRF-----IIAIKAYSADVVVRVTGD 101 (241)
T ss_pred HHHHHHcCe--------eEec-C-------------------------CHHHHHHHH-----HHHHHhcCCCeEEEeeCC
Confidence 888887653 3454 2 22 222222 222334455567777889
Q ss_pred cccccccCHHHHH----HHhhcCCcEE
Q 010950 276 NALVRVADPTFLG----YFIDKGVSAG 298 (497)
Q Consensus 276 N~L~~~~Dp~~lG----~~~~~~~~~~ 298 (497)
|++ +||.++- .+.++|+|+.
T Consensus 102 ~P~---~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 102 NPF---LDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred CCC---CCHHHHHHHHHHHHhcCCccc
Confidence 996 6787665 4556777774
No 105
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=68.44 E-value=5 Score=34.34 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=30.6
Q ss_pred Cchhcccc-ccCCHHHHHHHHHHHhcCChHHHHHHHHH
Q 010950 37 QEDAFALW-DELSPDERDHLVKDIESLDLPRVDRIIRC 73 (497)
Q Consensus 37 Q~Hll~~~-~~l~~~ek~~l~~ql~~iD~~~~~~~~~~ 73 (497)
|-+||+-| +.=+++||+.|+++|+.+|.....++|+.
T Consensus 59 qlkLf~qWf~~W~~~ern~fl~~Lee~D~~f~~k~~~~ 96 (98)
T PF14969_consen 59 QLKLFRQWFPKWSEEERNKFLEQLEEIDPDFVAKFYQE 96 (98)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 55778544 45689999999999999999998888875
No 106
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=62.78 E-value=4.6 Score=42.67 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=46.9
Q ss_pred EEEEEecCCCccccC---CCCCCccccccCCCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHH
Q 010950 120 LAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (497)
Q Consensus 120 vavvlLAGG~GTRLG---~~~PKg~~~i~l~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t 196 (497)
.-.|++|||-||||- ...||.++|| -+++++.+-+.-+.+. + -..+ ++.+-..-.+++
T Consensus 10 fqavV~a~~ggt~~p~~~~~~pKaLLPI---gn~PMi~YpL~~L~~~--------g------ftei--iVv~~e~e~~~i 70 (433)
T KOG1462|consen 10 FQAVVLAGGGGTRMPEVTSRLPKALLPI---GNKPMILYPLNSLEQA--------G------FTEI--IVVVNEDEKLDI 70 (433)
T ss_pred hhhheeecCCceechhhhhhcchhhccc---CCcceeeeehhHHHhc--------C------CeEE--EEEecHHHHHHH
Confidence 346889999999984 6779999999 7899998887765321 1 1123 555566677888
Q ss_pred HHHHhh
Q 010950 197 RKYFEG 202 (497)
Q Consensus 197 ~~~~~~ 202 (497)
++.|.+
T Consensus 71 ~~al~~ 76 (433)
T KOG1462|consen 71 ESALGS 76 (433)
T ss_pred HHHHhc
Confidence 999976
No 107
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=61.93 E-value=30 Score=32.77 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=24.9
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCChHHHHHHHHHH
Q 010950 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (497)
Q Consensus 122 vvlLAGG~GTRLG~~~PKg~~~i~l~sgksllq~~~e~i~~ 162 (497)
+|+.|-|-.+||-- |-+.++ .||||+++.++++++
T Consensus 2 aiIpAR~gS~rlp~---Knl~~l---~gkpLi~~~i~~a~~ 36 (217)
T PF02348_consen 2 AIIPARGGSKRLPG---KNLKPL---GGKPLIEYVIERAKQ 36 (217)
T ss_dssp EEEEE-SSSSSSTT---GGGSEE---TTEEHHHHHHHHHHH
T ss_pred EEEecCCCCCCCCc---chhhHh---CCccHHHHHHHHHHh
Confidence 56777555566522 556666 999999999999875
No 108
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=47.09 E-value=19 Score=28.47 Aligned_cols=40 Identities=23% Similarity=0.538 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHH---HCCCch-------hc-cccccCCHHHHHHHHHHHhc
Q 010950 22 SPPPQALLERLK---DYGQED-------AF-ALWDELSPDERDHLVKDIES 61 (497)
Q Consensus 22 ~~~~~~l~~~l~---~~gQ~H-------ll-~~~~~l~~~ek~~l~~ql~~ 61 (497)
..++++|..... ..|+++ || .+|..++++||+.++..|.+
T Consensus 12 ~~s~~elk~~I~daI~sgEEk~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~ 62 (65)
T TIGR03092 12 NNTKEQLEATIVDAIQSGEEKMLPGLGVLFEAIWKHANEQEKDEMLETLEQ 62 (65)
T ss_pred CCCHHHHHHHHHHHHhccchhcCCccHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445566666555 346665 55 78999999999999998864
No 109
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=46.00 E-value=69 Score=25.09 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=38.1
Q ss_pred eeEEEecCCCchHHHHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHH
Q 010950 182 IHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDM 261 (497)
Q Consensus 182 ipl~IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l 261 (497)
.+++-.+...+.+.+++++.+. +.+..+|.+-.+|+.+ |+-+-..+|.++|-|..+
T Consensus 28 ~~~~~v~~~~~~~~~~~~l~~~------------~g~~~vP~v~i~g~~i------------gg~~~~~~~~~~g~l~~~ 83 (84)
T TIGR02180 28 YEVVELDQLSNGSEIQDYLEEI------------TGQRTVPNIFINGKFI------------GGCSDLLALYKSGKLAEL 83 (84)
T ss_pred CEEEEeeCCCChHHHHHHHHHH------------hCCCCCCeEEECCEEE------------cCHHHHHHHHHcCChhhh
Confidence 4456666666677888888762 2345677776677633 666778888888888765
No 110
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=41.47 E-value=29 Score=27.54 Aligned_cols=41 Identities=22% Similarity=0.580 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHH---CCCch-------hc-cccccCCHHHHHHHHHHHhc
Q 010950 21 QSPPPQALLERLKD---YGQED-------AF-ALWDELSPDERDHLVKDIES 61 (497)
Q Consensus 21 ~~~~~~~l~~~l~~---~gQ~H-------ll-~~~~~l~~~ek~~l~~ql~~ 61 (497)
...+.++|.+.... .|+++ || ..|...++++|++++..|.+
T Consensus 12 ~g~s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~ 63 (65)
T PF14098_consen 12 KGSSKEELKDTIEDAIQSGEEKALPGLGVLFEVIWKNSDESEKQEMVNTLEQ 63 (65)
T ss_pred cCCCHHHHHHHHHHHHhccchhcCCchHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34556666666653 35555 45 78999999999999988863
No 111
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=39.78 E-value=31 Score=27.57 Aligned_cols=40 Identities=20% Similarity=0.524 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHH---HCCCch-------hc-cccccCCHHHHHHHHHHHhc
Q 010950 22 SPPPQALLERLK---DYGQED-------AF-ALWDELSPDERDHLVKDIES 61 (497)
Q Consensus 22 ~~~~~~l~~~l~---~~gQ~H-------ll-~~~~~l~~~ek~~l~~ql~~ 61 (497)
..++++|..... ..|+++ || .+|...+++||+.+++.|.+
T Consensus 15 g~s~eel~~~I~daIqsgEEk~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~ 65 (68)
T PRK02955 15 GNSKEELEGTIVDAIQSGEEKMLPGLGVLFEVIWKNADENEKDEMLETLEQ 65 (68)
T ss_pred CCCHHHHHHHHHHHHhccchhcCCcchhHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445566666555 345554 55 78999999999999998864
No 112
>PHA03050 glutaredoxin; Provisional
Probab=37.71 E-value=1.3e+02 Score=25.96 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=36.4
Q ss_pred chHHHHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHc
Q 010950 192 TDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR 264 (497)
Q Consensus 192 t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~ 264 (497)
....+++.|++.. .|.++|.+-.+|+.+ |..+-+.+|+++|-|+.+++.
T Consensus 53 ~~~~~~~~l~~~t------------G~~tVP~IfI~g~~i------------GG~ddl~~l~~~g~L~~~l~~ 101 (108)
T PHA03050 53 PENELRDYFEQIT------------GGRTVPRIFFGKTSI------------GGYSDLLEIDNMDALGDILSS 101 (108)
T ss_pred CCHHHHHHHHHHc------------CCCCcCEEEECCEEE------------eChHHHHHHHHcCCHHHHHHH
Confidence 3557777777632 256789887788765 777778889999998887765
No 113
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=29.97 E-value=2.4e+02 Score=23.70 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=25.4
Q ss_pred cCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHH
Q 010950 218 QGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT 263 (497)
Q Consensus 218 Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~ 263 (497)
+.++|.+-.+|+.+ |.-+-..+|.++|-|+.+++
T Consensus 59 ~~tvP~Vfi~g~~i------------GG~ddl~~l~~~G~L~~~l~ 92 (99)
T TIGR02189 59 SPAVPAVFVGGKLV------------GGLENVMALHISGSLVPMLK 92 (99)
T ss_pred CCCcCeEEECCEEE------------cCHHHHHHHHHcCCHHHHHH
Confidence 66788877777644 55666788899998888774
No 114
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.10 E-value=53 Score=36.64 Aligned_cols=55 Identities=33% Similarity=0.590 Sum_probs=38.4
Q ss_pred cccCCCCCCccccccCC-CCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCc--------hHHHHHHHh
Q 010950 131 TRLGSSDPKGCVNIGLP-SGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFT--------DDATRKYFE 201 (497)
Q Consensus 131 TRLG~~~PKg~~~i~l~-sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t--------~~~t~~~~~ 201 (497)
||||-..|||.+=+|+| .|||+|- + ..| -...+|+|.|.-..= ...+++.|.
T Consensus 330 trLGGKLPKGVLLvGPPGTGKTlLA---R------AvA----------GEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~ 390 (752)
T KOG0734|consen 330 TRLGGKLPKGVLLVGPPGTGKTLLA---R------AVA----------GEAGVPFFYASGSEFDEMFVGVGARRVRDLFA 390 (752)
T ss_pred hhccCcCCCceEEeCCCCCchhHHH---H------Hhh----------cccCCCeEeccccchhhhhhcccHHHHHHHHH
Confidence 89999999999989988 6999872 1 122 134578888766543 345677776
Q ss_pred hcC
Q 010950 202 GHK 204 (497)
Q Consensus 202 ~~~ 204 (497)
.-+
T Consensus 391 aAk 393 (752)
T KOG0734|consen 391 AAK 393 (752)
T ss_pred HHH
Confidence 643
No 115
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=26.44 E-value=1.2e+02 Score=32.36 Aligned_cols=119 Identities=16% Similarity=0.143 Sum_probs=72.1
Q ss_pred CCCCCCccccccC--CCCCChHHHHHHHHHHHHHHHHhhhcCCCCCCCcceeEEEecCCCchHHHHHHHhhcCCCCCCCC
Q 010950 134 GSSDPKGCVNIGL--PSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESD 211 (497)
Q Consensus 134 G~~~PKg~~~i~l--~sgksllq~~~e~i~~l~~l~~~~~~~~~~~~~~~ipl~IMTS~~t~~~t~~~~~~~~~FGl~~~ 211 (497)
..||||-..+--- .+|+.-|+-.++-|..|+. +++.+-..+++...+-+...+++.-..-+|. .
T Consensus 120 SiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~------------~~v~~~~~~vv~~~n~~~~~ei~~~l~~~g~--~ 185 (378)
T COG0641 120 SIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQA------------HGVDFNTLTVVNRQNVLHPEEIYHFLKSEGS--K 185 (378)
T ss_pred eccCchHhccccccCCCCCccHHHHHHHHHHHHH------------cCCcEEEEEEEchhHhhCHHHHHHHHHHccc--c
Confidence 5799998877542 3699999999999988776 3455555666666665555555544333562 2
Q ss_pred cEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHcCceEEEEEeCCccc
Q 010950 212 QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (497)
Q Consensus 212 ~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~G~~yi~v~~vDN~L 278 (497)
.+.| .|++...+.-. .-..-...|-+-|..... +++.|...++.-+++...|+++
T Consensus 186 ~i~f-----ip~~~~~~~~~--~~~~~~~~~~~~~~fl~~-----~~~~~~~~~~~~i~i~~f~~~~ 240 (378)
T COG0641 186 FIQF-----IPLVESDNRGD--SLLEFSVTAEEYGQFLIA-----IFDEWVRHDVGRIFIQNFDQLL 240 (378)
T ss_pred eEEE-----EecccCCCCCc--cccccccCHHHHHHHHHH-----HHHHHHHhcCCeeeehhHHHHH
Confidence 3444 56664332210 000011223333444443 5677888888889998888876
No 116
>CHL00195 ycf46 Ycf46; Provisional
Probab=26.09 E-value=4.5e+02 Score=28.98 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010950 23 PPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLR 76 (497)
Q Consensus 23 ~~~~~l~~~l~~~gQ~Hll~~~~~l~~~ek~~l~~ql~~iD~~~~~~~~~~~l~ 76 (497)
|+.+++.+.|...-+.. =-.++++..++|++.++.+....+..+++..+.
T Consensus 142 P~~~ei~~~l~~~~~~~----~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~ 191 (489)
T CHL00195 142 PTESEIKKELTRLIKSL----NIKIDSELLENLTRACQGLSLERIRRVLSKIIA 191 (489)
T ss_pred cCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 55566666554433211 114678888889888888888888777765543
No 117
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=23.51 E-value=43 Score=33.35 Aligned_cols=85 Identities=18% Similarity=0.309 Sum_probs=52.0
Q ss_pred HHhhhhhcCCCEEEEEecCCCccccCCCCCCcccc----ccCCCCCChHHHH----HHHHHHHHHHHHhhhcCCCCCCCc
Q 010950 109 KMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVN----IGLPSGKSLFQLQ----AERILCVQRLAAQVTSEGGGSGSA 180 (497)
Q Consensus 109 ~~G~~~i~~gkvavvlLAGG~GTRLG~~~PKg~~~----i~l~sgksllq~~----~e~i~~l~~l~~~~~~~~~~~~~~ 180 (497)
..++++.++|++..|++.||.++. +++-|..|-. .|+|...=+++.. .+.+.+..++ .+ .
T Consensus 71 ~~A~~LYk~gk~~~ilvSGg~~~~-~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i----~~-------~ 138 (239)
T PRK10834 71 QGAINAYNSGKVNYLLLSGDNALQ-SYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKV----FD-------T 138 (239)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCC-CCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHH----hC-------C
Confidence 469999999999999999998754 6777765532 2344322122211 1222221122 11 1
Q ss_pred ceeEEEecCCCchHHHHHHHhhcCCCCCC
Q 010950 181 AIHWYIMTSPFTDDATRKYFEGHKYFGLE 209 (497)
Q Consensus 181 ~ipl~IMTS~~t~~~t~~~~~~~~~FGl~ 209 (497)
-+++|.||...-....-.+++ +|++
T Consensus 139 -~~~iIVTq~fHm~RA~~ia~~---~Gi~ 163 (239)
T PRK10834 139 -NDFIIITQRFHCERALFIALH---MGIQ 163 (239)
T ss_pred -CCEEEECCHHHHHHHHHHHHH---cCCc
Confidence 146888998888888888875 6764
No 118
>TIGR02664 nitr_red_assoc conserved hypothetical protein. Most members of this protein family are found in the Cyanobacteria, and these mostly near nitrate reductase genes and molybdopterin biosynthesis genes. We note that molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. This protein is sometimes annotated as nitrate reductase-associated protein. Its function is unknown.
Probab=23.30 E-value=2.3e+02 Score=26.13 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=18.7
Q ss_pred HCCCchhccccccCCHHHHHHHHHH
Q 010950 34 DYGQEDAFALWDELSPDERDHLVKD 58 (497)
Q Consensus 34 ~~gQ~Hll~~~~~l~~~ek~~l~~q 58 (497)
..|=.-=|.+|..|+.+||+.|++-
T Consensus 25 ~cGvKLkL~hW~~ls~~eRq~Lv~~ 49 (145)
T TIGR02664 25 LCGVKLKLEHWQQLTQAEREELVRL 49 (145)
T ss_pred hhhhhccHHHHhhCCHHHHHHHHhC
Confidence 3333334789999999999998765
No 119
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=22.90 E-value=55 Score=30.03 Aligned_cols=30 Identities=23% Similarity=0.498 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCceeccCCCCccCeEEecccCcccccchhhh
Q 010950 442 LRLHTRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAI 483 (497)
Q Consensus 442 ~~~~~~~l~~~G~~~~~~~~~~~~~ieispl~sy~Ge~l~~~ 483 (497)
..+.++||+.||+. +|-+.-++.|||++++
T Consensus 108 i~~a~~~L~~aG~~------------~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 108 IERAKKWLKNAGVK------------EIFEVSAVTGEGIEEL 137 (143)
T ss_pred HHHHHHHHHHcCCC------------CeEEEECCCCcCHHHH
Confidence 44668999999982 1333447889999987
No 120
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=22.80 E-value=67 Score=27.88 Aligned_cols=29 Identities=31% Similarity=0.467 Sum_probs=23.0
Q ss_pred HHHCCCchhccccccCCHHHHHHHHHHHh
Q 010950 32 LKDYGQEDAFALWDELSPDERDHLVKDIE 60 (497)
Q Consensus 32 l~~~gQ~Hll~~~~~l~~~ek~~l~~ql~ 60 (497)
..+.-++.+-+-+++|+++|+++|+++++
T Consensus 75 ~~~~~~~~lqkRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 75 VDQLTNEELQKRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 33445566778889999999999999986
No 121
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=22.59 E-value=1.3e+02 Score=27.62 Aligned_cols=28 Identities=32% Similarity=0.586 Sum_probs=19.9
Q ss_pred HHHHCCCchhccccccCCHHHHHHHHHH
Q 010950 31 RLKDYGQEDAFALWDELSPDERDHLVKD 58 (497)
Q Consensus 31 ~l~~~gQ~Hll~~~~~l~~~ek~~l~~q 58 (497)
+|--.|=.-=|++|..|+.+||+.|++-
T Consensus 22 KLD~cGiKLkL~~W~~l~~~eRq~Lv~~ 49 (144)
T PF09655_consen 22 KLDTCGIKLKLSHWQQLSQEERQQLVDL 49 (144)
T ss_pred ccchhheeeeHHHHhcCCHHHHHHHHcC
Confidence 3334444444789999999999998753
No 122
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=4.2e+02 Score=22.87 Aligned_cols=56 Identities=23% Similarity=0.255 Sum_probs=40.6
Q ss_pred EEecCCCchHHHHHHHhhcCCCCCCCCcEEEEEcCCcceeecCCceeecCCCccccccCCCchhhHhhhhccHHHHHHHc
Q 010950 185 YIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR 264 (497)
Q Consensus 185 ~IMTS~~t~~~t~~~~~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhGgi~~aL~~sg~l~~l~~~ 264 (497)
+=.+-...-.++++++.+ .-.|.++|.+=.+|+.+ |-..=..+|+.+|-|..++++
T Consensus 44 vELD~~~~g~eiq~~l~~------------~tg~~tvP~vFI~Gk~i------------GG~~dl~~lh~~G~L~~~l~~ 99 (104)
T KOG1752|consen 44 VELDEDEDGSEIQKALKK------------LTGQRTVPNVFIGGKFI------------GGASDLMALHKSGELVPLLKE 99 (104)
T ss_pred EEccCCCCcHHHHHHHHH------------hcCCCCCCEEEECCEEE------------cCHHHHHHHHHcCCHHHHHHH
Confidence 333334455588888875 23466999998899865 777778888999988888754
No 123
>PF13945 NST1: Salt tolerance down-regulator
Probab=21.42 E-value=40 Score=32.43 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=22.2
Q ss_pred CCchhccccccCCHHHHHHHHHHHhcCChHHHHHHH
Q 010950 36 GQEDAFALWDELSPDERDHLVKDIESLDLPRVDRII 71 (497)
Q Consensus 36 gQ~Hll~~~~~l~~~ek~~l~~ql~~iD~~~~~~~~ 71 (497)
.++-|=.||..|+++||..|+ .||-+.+...+
T Consensus 103 Ere~LkeFW~SL~eeERr~LV----kIEKe~VLkkm 134 (190)
T PF13945_consen 103 EREKLKEFWESLSEEERRSLV----KIEKEAVLKKM 134 (190)
T ss_pred HHHHHHHHHHccCHHHHHHHH----HhhHHHHHHHH
Confidence 344566899999999998765 46665554433
Done!