Query 010952
Match_columns 497
No_of_seqs 270 out of 2954
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 06:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.2E-44 2E-48 378.2 21.0 437 49-494 116-576 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-43 2.7E-48 377.1 20.5 442 46-495 88-553 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.7E-35 8.1E-40 267.2 2.0 390 52-447 53-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-34 2.3E-39 264.3 1.7 395 73-473 49-449 (873)
5 KOG0472 Leucine-rich repeat pr 99.9 1.5E-29 3.3E-34 220.7 -9.6 413 50-480 67-545 (565)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-28 2.6E-33 227.0 -5.9 366 73-450 5-373 (1255)
7 KOG0618 Serine/threonine phosp 99.9 7.8E-28 1.7E-32 231.1 -2.6 414 52-483 46-496 (1081)
8 KOG0444 Cytoskeletal regulator 99.9 5.7E-28 1.2E-32 222.6 -4.2 367 50-428 6-376 (1255)
9 KOG0618 Serine/threonine phosp 99.9 8.6E-27 1.9E-31 224.0 -2.6 422 52-496 22-483 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 6.5E-28 1.4E-32 210.6 -13.2 387 50-453 90-542 (565)
11 PLN03210 Resistant to P. syrin 99.9 9.1E-22 2E-26 210.1 16.6 343 68-428 551-907 (1153)
12 PLN03210 Resistant to P. syrin 99.9 7.7E-21 1.7E-25 203.0 17.1 342 92-450 550-904 (1153)
13 cd00116 LRR_RI Leucine-rich re 99.8 7.3E-19 1.6E-23 163.9 23.9 209 266-475 77-319 (319)
14 cd00116 LRR_RI Leucine-rich re 99.8 5.6E-18 1.2E-22 157.9 23.8 259 170-450 19-318 (319)
15 KOG4237 Extracellular matrix p 99.8 3.6E-20 7.8E-25 162.2 -2.3 131 175-305 68-199 (498)
16 KOG4237 Extracellular matrix p 99.7 4.8E-19 1E-23 155.2 -1.2 276 199-475 68-358 (498)
17 PRK15387 E3 ubiquitin-protein 99.6 1E-15 2.3E-20 152.4 10.5 264 150-459 202-465 (788)
18 PRK15387 E3 ubiquitin-protein 99.6 6.8E-15 1.5E-19 146.6 12.6 263 127-435 203-465 (788)
19 KOG4341 F-box protein containi 99.6 5.9E-15 1.3E-19 130.9 9.3 339 2-377 75-437 (483)
20 KOG1909 Ran GTPase-activating 99.5 1.3E-13 2.8E-18 119.8 12.4 192 292-484 90-321 (382)
21 PRK15370 E3 ubiquitin-protein 99.5 3.8E-14 8.1E-19 142.3 10.5 248 175-453 179-429 (754)
22 KOG1909 Ran GTPase-activating 99.5 6.1E-13 1.3E-17 115.7 13.3 289 195-484 27-378 (382)
23 PRK15370 E3 ubiquitin-protein 99.4 4.2E-13 9.2E-18 134.8 11.4 227 174-428 199-428 (754)
24 KOG2120 SCF ubiquitin ligase, 99.4 1.2E-13 2.6E-18 117.3 6.1 264 1-280 100-373 (419)
25 KOG4341 F-box protein containi 99.4 4.1E-13 9E-18 119.4 8.0 153 340-493 292-456 (483)
26 KOG2120 SCF ubiquitin ligase, 99.4 5.6E-13 1.2E-17 113.3 7.4 197 295-493 186-391 (419)
27 KOG3207 Beta-tubulin folding c 99.3 4E-13 8.7E-18 120.1 2.3 209 267-476 118-339 (505)
28 KOG0617 Ras suppressor protein 99.3 3.2E-14 6.8E-19 110.8 -6.6 136 96-236 52-187 (264)
29 KOG3207 Beta-tubulin folding c 99.3 2.9E-12 6.3E-17 114.7 3.7 201 33-233 128-337 (505)
30 KOG0617 Ras suppressor protein 99.2 5.1E-14 1.1E-18 109.6 -7.9 163 49-220 31-194 (264)
31 PF14580 LRR_9: Leucine-rich r 99.1 4.3E-11 9.4E-16 97.7 2.8 128 341-473 18-150 (175)
32 PF14580 LRR_9: Leucine-rich r 99.1 4.9E-11 1.1E-15 97.4 2.2 129 362-495 15-146 (175)
33 KOG4658 Apoptotic ATPase [Sign 99.0 1.1E-10 2.4E-15 119.5 2.3 317 51-376 523-856 (889)
34 KOG1259 Nischarin, modulator o 99.0 7.1E-11 1.5E-15 100.8 0.1 130 341-477 283-413 (490)
35 KOG4658 Apoptotic ATPase [Sign 99.0 3.1E-10 6.8E-15 116.3 4.1 62 194-256 567-628 (889)
36 KOG1259 Nischarin, modulator o 99.0 2.7E-10 5.8E-15 97.4 2.4 127 198-330 284-411 (490)
37 COG5238 RNA1 Ran GTPase-activa 98.9 1.4E-08 3E-13 85.8 10.5 206 197-402 29-284 (388)
38 COG5238 RNA1 Ran GTPase-activa 98.9 1.8E-08 3.8E-13 85.2 10.6 92 215-306 23-132 (388)
39 KOG3665 ZYG-1-like serine/thre 98.6 1E-07 2.2E-12 95.6 9.0 149 342-494 122-280 (699)
40 PF13855 LRR_8: Leucine rich r 98.6 7.7E-09 1.7E-13 69.3 0.6 60 414-474 1-60 (61)
41 KOG1859 Leucine-rich repeat pr 98.6 1.2E-09 2.5E-14 104.5 -5.9 127 343-476 165-292 (1096)
42 PF13855 LRR_8: Leucine rich r 98.6 1.8E-08 3.8E-13 67.5 1.1 59 391-450 2-60 (61)
43 KOG2982 Uncharacterized conser 98.6 5.6E-08 1.2E-12 83.4 4.2 153 318-471 121-287 (418)
44 KOG2982 Uncharacterized conser 98.6 3.3E-08 7.2E-13 84.7 2.7 183 222-404 71-263 (418)
45 PLN03150 hypothetical protein; 98.6 9E-08 2E-12 96.3 6.1 106 368-474 420-526 (623)
46 KOG3665 ZYG-1-like serine/thre 98.5 3.6E-07 7.7E-12 91.7 8.5 154 317-472 121-284 (699)
47 COG4886 Leucine-rich repeat (L 98.5 1.5E-07 3.2E-12 90.5 5.4 195 250-454 97-292 (394)
48 PLN03150 hypothetical protein; 98.4 2.8E-07 6E-12 92.8 6.3 106 344-450 420-526 (623)
49 KOG0532 Leucine-rich repeat (L 98.3 1.3E-08 2.8E-13 94.9 -5.5 174 52-237 76-249 (722)
50 KOG1947 Leucine rich repeat pr 98.3 3.6E-06 7.9E-11 83.4 10.3 60 269-328 242-305 (482)
51 COG4886 Leucine-rich repeat (L 98.3 7.7E-07 1.7E-11 85.5 5.0 196 55-262 97-293 (394)
52 KOG0531 Protein phosphatase 1, 98.3 6.5E-08 1.4E-12 92.9 -3.1 243 220-477 70-319 (414)
53 KOG1947 Leucine rich repeat pr 98.2 5.8E-06 1.3E-10 82.0 10.5 110 244-353 186-306 (482)
54 KOG0531 Protein phosphatase 1, 98.2 9.5E-08 2.1E-12 91.8 -2.7 218 244-476 70-290 (414)
55 KOG1859 Leucine-rich repeat pr 98.1 9.1E-08 2E-12 92.0 -5.2 202 46-259 79-292 (1096)
56 KOG0532 Leucine-rich repeat (L 98.0 1.8E-07 3.9E-12 87.5 -5.6 191 273-473 78-270 (722)
57 KOG1644 U2-associated snRNP A' 97.9 1.1E-05 2.5E-10 65.6 3.7 104 367-473 43-150 (233)
58 KOG3864 Uncharacterized conser 97.7 2.8E-05 6E-10 63.4 3.5 82 392-473 103-186 (221)
59 KOG4579 Leucine-rich repeat (L 97.7 6.6E-06 1.4E-10 62.5 -0.0 110 343-455 28-139 (177)
60 PF12799 LRR_4: Leucine Rich r 97.6 6.7E-05 1.4E-09 45.7 3.4 36 440-476 2-37 (44)
61 KOG2123 Uncharacterized conser 97.5 1.7E-05 3.6E-10 67.9 -0.7 110 365-481 18-133 (388)
62 KOG4579 Leucine-rich repeat (L 97.5 2.5E-05 5.3E-10 59.5 0.1 83 340-424 51-133 (177)
63 KOG2123 Uncharacterized conser 97.5 2.3E-05 5E-10 67.1 -0.3 102 340-445 17-123 (388)
64 PF12799 LRR_4: Leucine Rich r 97.4 0.0002 4.3E-09 43.6 3.5 35 368-403 3-37 (44)
65 KOG1644 U2-associated snRNP A' 97.4 0.00018 3.8E-09 58.9 4.0 81 52-135 43-123 (233)
66 KOG3864 Uncharacterized conser 97.2 0.00027 5.9E-09 57.8 3.0 82 53-134 103-185 (221)
67 PF13306 LRR_5: Leucine rich r 97.1 0.0002 4.3E-09 56.5 1.7 8 414-421 81-88 (129)
68 KOG2739 Leucine-rich acidic nu 97.1 0.00022 4.9E-09 60.8 1.8 90 361-450 60-154 (260)
69 PF13306 LRR_5: Leucine rich r 97.1 0.00028 6E-09 55.7 1.9 121 314-441 8-128 (129)
70 PRK15386 type III secretion pr 97.1 0.0024 5.1E-08 59.6 7.9 57 266-328 48-104 (426)
71 KOG4308 LRR-containing protein 96.9 0.00026 5.7E-09 68.3 0.8 83 151-234 89-184 (478)
72 PRK15386 type III secretion pr 96.8 0.0025 5.4E-08 59.5 6.0 79 311-402 45-124 (426)
73 KOG2739 Leucine-rich acidic nu 96.6 0.00074 1.6E-08 57.8 1.2 15 173-187 90-104 (260)
74 KOG4308 LRR-containing protein 96.6 0.00042 9E-09 67.0 -0.5 182 272-454 89-305 (478)
75 PF13516 LRR_6: Leucine Rich r 94.7 0.021 4.5E-07 29.4 1.5 22 463-484 2-23 (24)
76 smart00367 LRR_CC Leucine-rich 94.3 0.057 1.2E-06 28.4 2.6 23 462-484 1-24 (26)
77 smart00367 LRR_CC Leucine-rich 93.4 0.091 2E-06 27.6 2.4 23 74-96 1-23 (26)
78 PF13516 LRR_6: Leucine Rich r 93.2 0.047 1E-06 28.0 1.1 21 439-459 2-22 (24)
79 PF00560 LRR_1: Leucine Rich R 92.1 0.059 1.3E-06 27.0 0.5 13 440-452 1-13 (22)
80 PF13504 LRR_7: Leucine rich r 90.6 0.19 4.1E-06 23.3 1.4 13 440-452 2-14 (17)
81 smart00368 LRR_RI Leucine rich 90.6 0.34 7.3E-06 26.0 2.6 22 463-484 2-23 (28)
82 PF12937 F-box-like: F-box-lik 87.4 1.1 2.3E-05 27.6 3.6 35 1-48 3-37 (47)
83 smart00369 LRR_TYP Leucine-ric 82.1 1.1 2.4E-05 23.3 1.6 17 439-455 2-18 (26)
84 smart00370 LRR Leucine-rich re 82.1 1.1 2.4E-05 23.3 1.6 17 439-455 2-18 (26)
85 KOG3763 mRNA export factor TAP 75.3 3.2 6.9E-05 40.4 3.5 66 387-453 215-284 (585)
86 PF00646 F-box: F-box domain; 73.3 5.9 0.00013 24.2 3.4 34 1-47 5-38 (48)
87 smart00256 FBOX A Receptor for 65.1 8.4 0.00018 22.4 2.7 13 2-14 1-13 (41)
88 smart00365 LRR_SD22 Leucine-ri 60.9 7 0.00015 20.5 1.5 15 463-477 2-16 (26)
89 KOG0473 Leucine-rich repeat pr 54.7 0.33 7.1E-06 41.3 -6.3 84 338-424 38-121 (326)
90 KOG3763 mRNA export factor TAP 48.2 33 0.00071 33.8 4.8 40 46-85 213-254 (585)
91 smart00364 LRR_BAC Leucine-ric 48.0 10 0.00022 19.9 0.9 15 439-453 2-16 (26)
92 KOG0473 Leucine-rich repeat pr 43.5 0.93 2E-05 38.7 -5.3 95 362-460 38-132 (326)
93 PF07723 LRR_2: Leucine Rich R 43.3 17 0.00037 19.0 1.3 24 465-489 2-26 (26)
94 KOG4242 Predicted myosin-I-bin 38.1 1.1E+02 0.0025 29.6 6.5 272 149-424 165-478 (553)
95 KOG3735 Tropomodulin and leiom 30.9 67 0.0014 29.5 3.7 18 437-454 253-270 (353)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.2e-44 Score=378.17 Aligned_cols=437 Identities=22% Similarity=0.229 Sum_probs=239.9
Q ss_pred cCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCC
Q 010952 49 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 128 (497)
Q Consensus 49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 128 (497)
.+++|++|+++++.+.+..+. +.+++|++|++++| .+....+..++.+++|++|++++|. +....|..++++++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLE 191 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCC
Confidence 566777777777666543332 34566666666665 4444455566666666666666665 3444555666666666
Q ss_pred EEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCC
Q 010952 129 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 208 (497)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 208 (497)
+|++++|......+..+.++++|++|++++|. +....+..+..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 66666654443445555666666666666533 33334455556666666666666555555555566666666666666
Q ss_pred CCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHH
Q 010952 209 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLV 288 (497)
Q Consensus 209 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~ 288 (497)
.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+.
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence 55554555555556666666666555554555555555555555555555544444455555555555555554444444
Q ss_pred HHhCCCCCCEeeccCcccch------------------------HHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCC
Q 010952 289 NLTGLCNLKCLELSDTQVGS------------------------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 344 (497)
Q Consensus 289 ~l~~~~~L~~L~l~~~~~~~------------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 344 (497)
.+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+....+..+.++++|
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 44445555555555444433 333334444555555555554443344444455555
Q ss_pred cEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 345 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 345 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
+.|++++|.++...+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|++.+..+..+..+++|+.|++++|
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 555555554444333333344455555555554443333222 2345555555555555555555555666666666666
Q ss_pred CCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccC
Q 010952 425 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 494 (497)
Q Consensus 425 ~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l 494 (497)
.+....|..+.++++|+.|++++|.+++..+..+..+++|+.|++++|.++......+. .+++|+.+
T Consensus 510 -~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~l 576 (968)
T PLN00113 510 -KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG--NVESLVQV 576 (968)
T ss_pred -cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh--cCcccCEE
Confidence 55555555566666666666666666665556666666666666666666554444443 34444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-43 Score=377.11 Aligned_cols=442 Identities=20% Similarity=0.194 Sum_probs=353.2
Q ss_pred HHhcCCceeEEEeeCCCCChHHHHHh-cCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCC
Q 010952 46 IASQGSSLLSVDLSGSDVTDSGLIHL-KDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 124 (497)
Q Consensus 46 ~~~~~~~l~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 124 (497)
....+++|++|+++++.+.+..|..+ ..+.+|++|++++| .+.+..+ ...+++|++|++++|. +....|..++++
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p--~~~l~~L~~L~Ls~n~-~~~~~p~~~~~l 163 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIP--RGSIPNLETLDLSNNM-LSGEIPNDIGSF 163 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccC--ccccCCCCEEECcCCc-ccccCChHHhcC
Confidence 34568999999999999887777665 49999999999998 4544332 2568999999999997 466778899999
Q ss_pred CCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEE
Q 010952 125 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 204 (497)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 204 (497)
++|++|++++|......+..+.++++|++|++++|. +....+..+..+++|+.|++++|.+....+..+.++++|++|+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 999999999986666677889999999999999865 4445678889999999999999999988888999999999999
Q ss_pred ccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH
Q 010952 205 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 284 (497)
Q Consensus 205 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 284 (497)
+++|.+.+..+..++++++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+..
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 99999988888899999999999999999887778888899999999999999887777788899999999999998887
Q ss_pred hHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcC
Q 010952 285 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 364 (497)
Q Consensus 285 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 364 (497)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+....+..+..
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 77788889999999999999988777778888899999999988776555555656666666666666665544555555
Q ss_pred CCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhh-----------------------cCCCCeecc
Q 010952 365 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-----------------------LSSLTLLNL 421 (497)
Q Consensus 365 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-----------------------l~~L~~L~l 421 (497)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+.. .++|+.|++
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l 482 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence 666666666666555544545555555555555555544433322222 356667777
Q ss_pred cCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccCC
Q 010952 422 SQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 495 (497)
Q Consensus 422 ~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~ 495 (497)
++| .+++..+..+..+++|+.|++++|.+.+..++.+..+++|+.|++++|.++......+. .+++|+.|.
T Consensus 483 s~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~ 553 (968)
T PLN00113 483 SRN-QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS--EMPVLSQLD 553 (968)
T ss_pred cCC-ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh--CcccCCEEE
Confidence 777 66666777788888899999999988888888888889999999999988877666665 677777764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-35 Score=267.17 Aligned_cols=390 Identities=24% Similarity=0.253 Sum_probs=302.2
Q ss_pred ceeEEEeeCCCCChHHHHHhcC--CCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 52 SLLSVDLSGSDVTDSGLIHLKD--CSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 52 ~l~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
+.+.|+.++..+.......+.. .+.-+.|++++| ++....+..|..+++|+.+++..|.. ..+|...+...+|+.
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEK 129 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeecccc-ccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeE
Confidence 4566677776664333333332 245667888887 77777888888889999999988863 445655556667899
Q ss_pred EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952 130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 209 (497)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 209 (497)
|++.+|...+.....++.++.||.||++. +.+.......+..-.++++|++++|.|+....+.|..+.+|..|.++.|+
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 99888654445556778888899999888 44555556667776788899999998888888888888888899999998
Q ss_pred CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952 210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 289 (497)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 289 (497)
++...+..|.++++|+.|++..|.+.......|.++++|+.+.+..|.+....-..|..+.+++.|++..|++.....+.
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 88877788888899999999888876654556788888888888888887655556778888889998888887766667
Q ss_pred HhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCc
Q 010952 290 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 369 (497)
Q Consensus 290 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 369 (497)
+-++.+|+.|+++.|.+.........-+++|+.|++++|.++......+..+..|++|.++.|+++.....+|..+.+|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 77788888888888887776666667788888888888888777777777788888888888888887777788888888
Q ss_pred EEEecCCCcCh---HHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEe
Q 010952 370 HLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 446 (497)
Q Consensus 370 ~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l 446 (497)
+|++++|.+.. .....+..+++|+.|++-||++..+..+.|..+++|+.|+|.+| -+....+.++..+ .|++|-+
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccccc-hhhhhhh
Confidence 88888887543 33555677888888888888888887788888888888888888 6777777777776 7777755
Q ss_pred e
Q 010952 447 S 447 (497)
Q Consensus 447 ~ 447 (497)
.
T Consensus 447 n 447 (873)
T KOG4194|consen 447 N 447 (873)
T ss_pred c
Confidence 4
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-34 Score=264.25 Aligned_cols=395 Identities=23% Similarity=0.311 Sum_probs=314.2
Q ss_pred CCCCc-CEEEccCccccChhHHHHhhCC--CCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCC
Q 010952 73 DCSNL-QSLDFNFCIQISDGGLEHLRGL--SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLM 149 (497)
Q Consensus 73 ~~~~L-~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 149 (497)
.|+.. +.|+.+.. .+....-..+.++ +.-+.|++++|. +....+..|.++++|+++++..| .+...|...+...
T Consensus 49 ~c~c~~~lldcs~~-~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDR-ELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESG 125 (873)
T ss_pred cCCCCceeeecCcc-ccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccc-hhhhccccccccc
Confidence 34433 44455553 4443322333332 345679999997 67777888999999999999984 4666666666667
Q ss_pred CCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 010952 150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 229 (497)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 229 (497)
+|+.|++.+ +.+.....+.+..++.|+.|+++.|.|+......+..-.++++|++++|.|+..-...|..+.+|..|.+
T Consensus 126 hl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 126 HLEKLDLRH-NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred ceeEEeeec-cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 799999988 5566666778888889999999988888766667777788999999999988877778888889999999
Q ss_pred CCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchH
Q 010952 230 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 309 (497)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 309 (497)
+.|.++......|.++++|+.|++..|.+.......|..+++|+.+.+..|.+.....+.|..+.++++|++..|++...
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 99998888888888899999999998888755455688889999999988887766667777888999999998888877
Q ss_pred HHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhcc
Q 010952 310 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 389 (497)
Q Consensus 310 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 389 (497)
...++-++..|+.|++++|.+.........-+++|+.|+++.|.++......+..+..|++|++++|.+.......+..+
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence 77788888899999999988877666777778899999999998888878888888889999999998888777778888
Q ss_pred CCCCeeeecCCCCCh---hhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccc
Q 010952 390 KNLRSLEICGGGLTD---AGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLR 466 (497)
Q Consensus 390 ~~L~~L~l~~~~l~~---~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 466 (497)
.+|++|+++.|.+.. .....+..+++|+.|.+.+| ++....-.++.+++.|+.|++-+|.+-..-+++|..+ .|+
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence 899999999887642 23455667889999999998 7877777788889999999999998888878888887 888
Q ss_pred eeecccC
Q 010952 467 SLTLESC 473 (497)
Q Consensus 467 ~L~l~~~ 473 (497)
+|.+..-
T Consensus 443 ~Lv~nSs 449 (873)
T KOG4194|consen 443 ELVMNSS 449 (873)
T ss_pred hhhhccc
Confidence 8877653
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.5e-29 Score=220.74 Aligned_cols=413 Identities=19% Similarity=0.210 Sum_probs=266.1
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
.+.+++|+++++.+. ..|.+++.+..++.++.+.+ ++. ..++.+.....|++|+++.+.. ...++.++.+-.|+.
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~ls-~lp~~i~s~~~l~~l~~s~n~~--~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KLS-ELPEQIGSLISLVKLDCSSNEL--KELPDSIGRLLDLED 141 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hHh-hccHHHhhhhhhhhhhccccce--eecCchHHHHhhhhh
Confidence 455666666666654 45666666666666666665 333 2456666667777777777653 334566666777777
Q ss_pred EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952 130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 209 (497)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 209 (497)
++..+| .+...+..+.++.+|..+++.++. +.... +....|+.|++++...|-+. ..|..++++..|+.|++..|+
T Consensus 142 l~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~-~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 142 LDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALP-ENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCC-HHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence 776663 466666667777777777776633 33223 33333777777777666555 456677788888888888887
Q ss_pred CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952 210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 289 (497)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 289 (497)
+.. .| .|.++..|.+++++.|++.....+....++++.+||++.|++. ..|+.++-+.+|+.|++++|.++..+ ..
T Consensus 218 i~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp-~s 293 (565)
T KOG0472|consen 218 IRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLP-YS 293 (565)
T ss_pred ccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCC-cc
Confidence 765 33 7788888888888888776655555668888999999988887 56677777888899999988776543 34
Q ss_pred HhCCCCCCEeeccCcccchHHHHhh-----------------------------------------cCCCCCCEEeccCC
Q 010952 290 LTGLCNLKCLELSDTQVGSSGLRHL-----------------------------------------SGLTNLESINLSFT 328 (497)
Q Consensus 290 l~~~~~L~~L~l~~~~~~~~~~~~l-----------------------------------------~~~~~L~~L~l~~~ 328 (497)
++++ .|+.|.+.+|.+...-...+ -...+.+.|++++-
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 5666 78888888775422111100 01123344455444
Q ss_pred CCChHHHHHhc--CCCCCcEEEcCCCCCCHhH-----------------------HHHhcCCCCCcEEEecCCCcChHHH
Q 010952 329 GISDGSLRKLA--GLSSLKSLNLDARQITDTG-----------------------LAALTSLTGLTHLDLFGARITDSGA 383 (497)
Q Consensus 329 ~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~~~~~~~~~ 383 (497)
.++....+.+. .-.-.+..+++.|++...+ +..+..+++|..|++++|.+.+. |
T Consensus 373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P 451 (565)
T KOG0472|consen 373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-P 451 (565)
T ss_pred ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-c
Confidence 44332222221 2223556666666554321 12233456666667666655543 4
Q ss_pred HHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCc
Q 010952 384 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLK 463 (497)
Q Consensus 384 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 463 (497)
..+..+..|+.|+++.|.+... |..++.+..++.+-.++| .+....+..+.++.+|.+|++.+|.+.. +|..++++.
T Consensus 452 ~e~~~lv~Lq~LnlS~NrFr~l-P~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~Lgnmt 528 (565)
T KOG0472|consen 452 EEMGSLVRLQTLNLSFNRFRML-PECLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMT 528 (565)
T ss_pred hhhhhhhhhheecccccccccc-hHHHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchhh-CChhhcccc
Confidence 4445555677777776665544 555555555666555556 6776667778899999999999999876 457889999
Q ss_pred ccceeecccCCCCHHHH
Q 010952 464 NLRSLTLESCKVTANDI 480 (497)
Q Consensus 464 ~L~~L~l~~~~~~~~~~ 480 (497)
+|++|++++|+|.-+.-
T Consensus 529 nL~hLeL~gNpfr~Pr~ 545 (565)
T KOG0472|consen 529 NLRHLELDGNPFRQPRH 545 (565)
T ss_pred ceeEEEecCCccCCCHH
Confidence 99999999999975433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.2e-28 Score=227.04 Aligned_cols=366 Identities=21% Similarity=0.204 Sum_probs=229.9
Q ss_pred CCCCcCEEEccCccccC-hhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCC
Q 010952 73 DCSNLQSLDFNFCIQIS-DGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKL 151 (497)
Q Consensus 73 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 151 (497)
-+|-.|-.++++| .++ +..|.....++.++-|.|..... ...|+.++++.+|++|.+.+| .+......+..+|+|
T Consensus 5 VLpFVrGvDfsgN-DFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGN-DFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRL 80 (1255)
T ss_pred ccceeecccccCC-cCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhh
Confidence 3566788889988 455 56778888899999999998764 668999999999999999985 455666677888999
Q ss_pred CEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCC
Q 010952 152 ESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR 231 (497)
Q Consensus 152 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 231 (497)
|.+.++.++-.....+..+-++..|+.|+++.|++. +.|..+...+++-.|++++|+|.......+.++..|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 999988866555556677788888888888888887 5567777788888888888888765445567778888888888
Q ss_pred CCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCC-HhHHHHHhCCCCCCEeeccCcccchHH
Q 010952 232 CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG-DEGLVNLTGLCNLKCLELSDTQVGSSG 310 (497)
Q Consensus 232 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~~ 310 (497)
|.+... |.....+..|++|++++|.+.......+..+++|+.|.+++.+-+ ...|..+..+.+|..++++.|++...
T Consensus 160 NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v- 237 (1255)
T KOG0444|consen 160 NRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV- 237 (1255)
T ss_pred chhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-
Confidence 877543 445667788888888888776554455556666777777665322 12233344555666666666655432
Q ss_pred HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChH-HHHHhhcc
Q 010952 311 LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNF 389 (497)
Q Consensus 311 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~ 389 (497)
+..+-.+++|+.|++++|.++... .....-.+|++|+++.|+++.. ++++..+++|+.|...+|+++.. +|..++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 344445555555666555544211 1111223455555555555542 34444555555555555544321 23334444
Q ss_pred CCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCc
Q 010952 390 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 450 (497)
Q Consensus 390 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 450 (497)
..|+.+...+|.+.-. |..+..|+.|+.|.|+.| ++-. .|+++.-++.|+.|++..|+
T Consensus 316 ~~Levf~aanN~LElV-PEglcRC~kL~kL~L~~N-rLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELV-PEGLCRCVKLQKLKLDHN-RLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhHHHHhhccccccC-chhhhhhHHHHHhccccc-ceee-chhhhhhcCCcceeeccCCc
Confidence 4455554444443322 444445555555555554 2221 24444445555555555554
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=7.8e-28 Score=231.07 Aligned_cols=414 Identities=24% Similarity=0.250 Sum_probs=244.2
Q ss_pred ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952 52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 131 (497)
Q Consensus 52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 131 (497)
+|++|+++++.+. ..|..+..+.+|+.|+++.+ .+.. .+...+.+.+|++|.|.++.. ...|..+..+.+|+.|+
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~~-vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIRS-VPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchh-hHhh-Cchhhhhhhcchhheeccchh--hcCchhHHhhhcccccc
Confidence 4999999998765 56777778889999999886 3333 456777888999999998863 66788888999999999
Q ss_pred ccCccccccccccccCCCCCCEEeccCC------------------CCCCccccccccCCCCCCEEEeeccccCchhHHh
Q 010952 132 LERCTRIHGGLVNLKGLMKLESLNIKWC------------------NCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAY 193 (497)
Q Consensus 132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~------------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 193 (497)
++.|. +...|..+..+..+..+..+++ +.+.+.....+..+.+ .|+++.|.+....
T Consensus 121 lS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d--- 194 (1081)
T KOG0618|consen 121 LSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD--- 194 (1081)
T ss_pred cchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhh---
Confidence 99853 3344444444444444444432 1111122222233333 3556555544222
Q ss_pred hhcCCCCcEEEccCCCCChHH------------------HHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC
Q 010952 194 LKGLQKLTLLNLEGCPVTAAC------------------LDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 255 (497)
Q Consensus 194 l~~l~~L~~L~l~~~~~~~~~------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 255 (497)
+..+.+|+.+....+++.... ...-..-.+|++++++++.+.... +++..+.+|+.++...
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANH 273 (1081)
T ss_pred hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccc
Confidence 222333333333333221100 000011124444444444443322 4444444444444444
Q ss_pred CCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCC-CCEEeccCCCCChHH
Q 010952 256 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN-LESINLSFTGISDGS 334 (497)
Q Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~ 334 (497)
|.+. ..+..+...++|+.+.+..|.+...+ ....++..|++|++..|++.......+..... ++.+..+.+.+....
T Consensus 274 N~l~-~lp~ri~~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 274 NRLV-ALPLRISRITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred hhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC-CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 4443 22233333444444444444332211 12233445555555555444332222222211 333333333222111
Q ss_pred HHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcC
Q 010952 335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414 (497)
Q Consensus 335 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~ 414 (497)
.-.=..++.|+.|++.+|.+++.....+.++++|+.|++++|++.......+.+++.|++|+++||.++.. +..+..++
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~ 430 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLG 430 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhh
Confidence 00001245678888888999888778888899999999999998887778888999999999999999988 47778889
Q ss_pred CCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHH
Q 010952 415 SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 483 (497)
Q Consensus 415 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 483 (497)
.|++|...+| .+.. .| .+..++.|+.+|++.|.++......-...++|++|+++||.-.....+.+
T Consensus 431 ~L~tL~ahsN-~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l 496 (1081)
T KOG0618|consen 431 RLHTLRAHSN-QLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTL 496 (1081)
T ss_pred hhHHHhhcCC-ceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhh
Confidence 9999999888 5554 23 67889999999999999887766555455899999999996433333333
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=5.7e-28 Score=222.61 Aligned_cols=367 Identities=21% Similarity=0.203 Sum_probs=302.4
Q ss_pred CCceeEEEeeCCCCC-hHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCC
Q 010952 50 GSSLLSVDLSGSDVT-DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 128 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 128 (497)
+|-+|-+++++|.++ +..|....++.+++.|.+... ++. ..|+.++++.+|++|.+.+|+. ......++.+|.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~-~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLE-QVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhh-hChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhH
Confidence 678899999999987 556777889999999999875 454 3688999999999999999985 44557788999999
Q ss_pred EEeccCcc-ccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccC
Q 010952 129 KLDLERCT-RIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 207 (497)
Q Consensus 129 ~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 207 (497)
.+.+..|+ +..+.|..+-.+..|.+|+++++. +. ..+..+..-+++-.|++++|+|....-..+.++..|-.|++++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhh-hh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 99999765 344667888899999999999844 43 3567777778889999999999877767778899999999999
Q ss_pred CCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCCh-hHHHHhhCCCCcCEEeCCCCCCCHhH
Q 010952 208 CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSCGIGDEG 286 (497)
Q Consensus 208 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~ 286 (497)
|++.. .|..++.+..|+.|.+++|.+.......+..+.+|++|.+++.+.+. ..|..+..+.+|+.++++.|++.. .
T Consensus 160 NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-v 237 (1255)
T KOG0444|consen 160 NRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-V 237 (1255)
T ss_pred chhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-c
Confidence 99866 56678999999999999998776666666777889999999876552 345556678899999999998874 4
Q ss_pred HHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhH-HHHhcCC
Q 010952 287 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG-LAALTSL 365 (497)
Q Consensus 287 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 365 (497)
|..+..+++|+.|++++|.++... ...+.+.+|++|+++.|.++. .+.++.++++|+.|.+.+|+++-.+ +..++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 556778999999999999987653 334567899999999998764 5678889999999999999887554 4567788
Q ss_pred CCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCC
Q 010952 366 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLT 428 (497)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~ 428 (497)
..|+.+...+|.+. ..|..+..|+.|+.|.++.|.+... |..+.-++.|+.|++..|+++.
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcCcc
Confidence 89999998888764 4578889999999999999998776 7788889999999999997654
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=8.6e-27 Score=223.96 Aligned_cols=422 Identities=23% Similarity=0.245 Sum_probs=276.6
Q ss_pred ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952 52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 131 (497)
Q Consensus 52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 131 (497)
.++.|+++.|-+.+...+....+-+|+.|+++++ .+.. .+..+..+.+|+.|+++.|.+ ...|....++.+|+++.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~-fp~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISS-FPIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLN 97 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeecccc-cccc-CCchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhhe
Confidence 3677777776554333555556666999999887 3332 466777788899999998854 44567788888999999
Q ss_pred ccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCC-------------------CCEEEeeccccCchhHH
Q 010952 132 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN-------------------LKSLQISCSKVTDSGIA 192 (497)
Q Consensus 132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-------------------L~~L~l~~~~~~~~~~~ 192 (497)
+.+ +.....|..+..+.+|+.|+++.+.... .+..+..+.. ++.+++..+.+....+.
T Consensus 98 L~~-n~l~~lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 98 LKN-NRLQSLPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred ecc-chhhcCchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence 987 5678888888888999999998754332 2222222222 33344444444444444
Q ss_pred hhhcCCCCcEEEccCCCCChHHHHHhhCC--------------------CCCcEEEcCCCCCChhHhHhhhcCCCCCEEE
Q 010952 193 YLKGLQKLTLLNLEGCPVTAACLDSLSAL--------------------GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 252 (497)
Q Consensus 193 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 252 (497)
.+..+.. .+++.+|.+... .+..+ ++|+.|..++|.+..... -....++++++
T Consensus 175 ~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~d 247 (1081)
T KOG0618|consen 175 DIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLD 247 (1081)
T ss_pred chhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeee
Confidence 4444444 466666655421 11222 233333333333221110 11224566666
Q ss_pred ccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCCh
Q 010952 253 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 332 (497)
Q Consensus 253 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 332 (497)
++.+.+... +.++..+.+|+.+....|.+. ..+..+....+|+.+.+..|.+... +......++|++|++..|++..
T Consensus 248 is~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 248 ISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred cchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccc
Confidence 666665533 255566666666666666553 2333444455566666655554432 3344556777777777776654
Q ss_pred HHHHHhcCCC-CCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhh
Q 010952 333 GSLRKLAGLS-SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK 411 (497)
Q Consensus 333 ~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~ 411 (497)
.....+.... +++.+..+.+.+.......-...+.|+.|++.+|.+++.....+.++++|+.|++++|++.......+.
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~ 404 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR 404 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh
Confidence 4433333222 245555554444332211112356788999999999998888889999999999999999988888889
Q ss_pred hcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCC
Q 010952 412 DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491 (497)
Q Consensus 412 ~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L 491 (497)
+++.|++|+++|| +++. ++..+..++.|++|...+|++.... .+..++.|+.+|++.|.++...+.+-. .+|+|
T Consensus 405 kle~LeeL~LSGN-kL~~-Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~--p~p~L 478 (1081)
T KOG0618|consen 405 KLEELEELNLSGN-KLTT-LPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEAL--PSPNL 478 (1081)
T ss_pred chHHhHHHhcccc-hhhh-hhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhC--CCccc
Confidence 9999999999999 7776 5688999999999999999988744 778899999999999999999888875 67999
Q ss_pred ccCCC
Q 010952 492 VSFRP 496 (497)
Q Consensus 492 ~~l~~ 496 (497)
++|..
T Consensus 479 kyLdl 483 (1081)
T KOG0618|consen 479 KYLDL 483 (1081)
T ss_pred ceeec
Confidence 98853
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=6.5e-28 Score=210.63 Aligned_cols=387 Identities=21% Similarity=0.232 Sum_probs=296.5
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
...+.+++.+++.+. ..|+.+....+|+.++.+.+ .+.. .++.++++-.|..|+..+|.+ ...|+.+.++.+|..
T Consensus 90 l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n-~~~e-l~~~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~ 164 (565)
T KOG0472|consen 90 LEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSN-ELKE-LPDSIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSK 164 (565)
T ss_pred HHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccc-ceee-cCchHHHHhhhhhhhcccccc--ccCchHHHHHHHHHH
Confidence 457788999998875 78889999999999999987 4443 577888899999999999975 456889999999999
Q ss_pred EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952 130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 209 (497)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 209 (497)
+++.++ .....++..-.++.|++++..++ .-+..++.++.+.+|..|++..|.+.... .|.++..|+.+.+..|+
T Consensus 165 l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 165 LDLEGN-KLKALPENHIAMKRLKHLDCNSN--LLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQ 239 (565)
T ss_pred hhcccc-chhhCCHHHHHHHHHHhcccchh--hhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccH
Confidence 999985 56666666666999999998763 44568899999999999999999988533 78999999999999998
Q ss_pred CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952 210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 289 (497)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 289 (497)
+.....+....++++..|++.+|++.+ .|+.+..+.+|+.||+++|.++. .+..++++ .|+.|.+.+|.+.......
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred HHhhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHH
Confidence 876444445589999999999999876 46667788999999999999984 45567888 8999999988543211110
Q ss_pred -----------Hh------------------------------CCCCCCEeeccCcccchHHHHhhcCC--CCCCEEecc
Q 010952 290 -----------LT------------------------------GLCNLKCLELSDTQVGSSGLRHLSGL--TNLESINLS 326 (497)
Q Consensus 290 -----------l~------------------------------~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~ 326 (497)
+. ...+.+.|++++-+++....+.+... .-++.++++
T Consensus 317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs 396 (565)
T KOG0472|consen 317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS 396 (565)
T ss_pred HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc
Confidence 00 01234455555554444333333221 124555555
Q ss_pred CCCCC-----------------------hHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHH
Q 010952 327 FTGIS-----------------------DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 383 (497)
Q Consensus 327 ~~~~~-----------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 383 (497)
.|.+. +.++..++.+++|..|++++|-+.+. +..++.+..|+.|+++.|++... |
T Consensus 397 kNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~l-P 474 (565)
T KOG0472|consen 397 KNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRML-P 474 (565)
T ss_pred cchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheecccccccccc-h
Confidence 54432 23344566789999999999877664 44556678899999999987654 7
Q ss_pred HHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccCh
Q 010952 384 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 453 (497)
Q Consensus 384 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~ 453 (497)
..+.....++.+-.++|++....+..+..+++|++|++.+| .+.. +|+.++++++|+.|++.+|+|..
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~-IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQ-IPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chhh-CChhhccccceeEEEecCCccCC
Confidence 77777778888888889999988888999999999999999 5554 68889999999999999999884
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9.1e-22 Score=210.09 Aligned_cols=343 Identities=22% Similarity=0.193 Sum_probs=209.0
Q ss_pred HHHhcCCCCcCEEEccCcc-----ccChhHHHHhhCCC-CCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccc
Q 010952 68 LIHLKDCSNLQSLDFNFCI-----QISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGG 141 (497)
Q Consensus 68 ~~~l~~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 141 (497)
..+|..+++|+.|.+.... ......+..+..++ +|+.|.+.+++. ...|..+ .+.+|++|++.++ .+...
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-~~~~L~~L~L~~s-~l~~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-RPENLVKLQMQGS-KLEKL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-CccCCcEEECcCc-ccccc
Confidence 4457788889888886531 11122344455554 688888888763 3344444 4678888888885 46666
Q ss_pred cccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCC
Q 010952 142 LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSAL 221 (497)
Q Consensus 142 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 221 (497)
+..+..+++|+.|+++++..+.. .+.+..+++|+.|++.++......+..+..+++|+.|++++|.....+|..+ ++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~--ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKE--IPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCc--CCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 66777888888888887665542 2356778888888888776555666777888888888888875444344433 67
Q ss_pred CCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH-------hHHHHHhCCC
Q 010952 222 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-------EGLVNLTGLC 294 (497)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-------~~~~~l~~~~ 294 (497)
++|+.|++++|......+. ...+|+.|+++++.+.. .+..+ .+++|+.|.+..+.... ..+......+
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 7888888888764433332 24577888888777653 22222 45677777776532110 1111122345
Q ss_pred CCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEec
Q 010952 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 374 (497)
Q Consensus 295 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 374 (497)
+|+.|++++|......+..+..+++|+.|++++|......+..+ ++++|+.|++++|......+ ....+|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p---~~~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP---DISTNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc---ccccccCEeECC
Confidence 67777777765544455566677777777777663322222222 46677777777653322111 123567777777
Q ss_pred CCCcChHHHHHhhccCCCCeeeecCCC-CChhhHHhhhhcCCCCeecccCCCCCC
Q 010952 375 GARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLT 428 (497)
Q Consensus 375 ~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~l~ 428 (497)
+|.+... |..+..+++|+.|++++|+ +... +..+..+++|+.+++++|..++
T Consensus 855 ~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 855 RTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCCccC-hHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCCcccc
Confidence 7766543 5556667777777777653 3332 3344556667777777765444
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=7.7e-21 Score=203.00 Aligned_cols=342 Identities=21% Similarity=0.175 Sum_probs=234.3
Q ss_pred HHHHhhCCCCCCEEEcCCCCC-----CChHHHHHHhCCC-CCCEEeccCccccccccccccCCCCCCEEeccCCCCCCcc
Q 010952 92 GLEHLRGLSNLTSLSFRRNNA-----ITAQGMKAFAGLI-NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDS 165 (497)
Q Consensus 92 ~~~~~~~~~~L~~L~l~~~~~-----~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 165 (497)
...+|.++++|+.|++..+.. .....|+.+..++ +|+.|.+.++ .+...|..+ ...+|+.|++.++. +. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~-l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSK-LE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcc-cc-c
Confidence 346788899999999865421 1223455566654 6999999885 355555555 46789999998854 32 2
Q ss_pred ccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcC
Q 010952 166 DMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKI 245 (497)
Q Consensus 166 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 245 (497)
.+..+..+++|+.|+++++......+ .+..+++|++|++++|......|..+..+++|+.|++++|......+..+ .+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 44566788999999998764332333 47778899999999986666678888899999999999876544444433 67
Q ss_pred CCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccch-------HHHHhhcCCC
Q 010952 246 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-------SGLRHLSGLT 318 (497)
Q Consensus 246 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~ 318 (497)
++|+.|++++|......+. ..++|+.|++.++.+...+ ..+ .+++|++|.+.++.... ........++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP-~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP-SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccc-ccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 8899999988854433322 2467888999888765432 222 46778888776643211 1111122356
Q ss_pred CCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeec
Q 010952 319 NLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 398 (497)
Q Consensus 319 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 398 (497)
+|+.|++++|......+..+.++++|+.|++.+|......+... .+++|+.|++++|......|. ..++|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECC
Confidence 88889998886555566778888899999998864332222222 578889999988865433332 24678888888
Q ss_pred CCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCc
Q 010952 399 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 450 (497)
Q Consensus 399 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 450 (497)
+|.+... |..+..+++|+.|++++|..+.. ++..+..+++|+.+++++|.
T Consensus 855 ~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCccC-hHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCc
Confidence 8888765 56677788899999988866665 44456678888888888885
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=7.3e-19 Score=163.88 Aligned_cols=209 Identities=29% Similarity=0.407 Sum_probs=111.0
Q ss_pred hhCCCCcCEEeCCCCCCCHhHHHHHhCC---CCCCEeeccCcccchHH----HHhhcCC-CCCCEEeccCCCCChH----
Q 010952 266 LKGLTNLESLNLDSCGIGDEGLVNLTGL---CNLKCLELSDTQVGSSG----LRHLSGL-TNLESINLSFTGISDG---- 333 (497)
Q Consensus 266 l~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~~~~~----~~~l~~~-~~L~~L~l~~~~~~~~---- 333 (497)
+..+++|+.|+++++.+....+..+..+ ++|++|++++|.+.... ...+..+ ++|+.+++++|.++..
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3344555555555554443222222222 23555555555544211 1223344 5666666666655522
Q ss_pred HHHHhcCCCCCcEEEcCCCCCCHhHH----HHhcCCCCCcEEEecCCCcChHHHH----HhhccCCCCeeeecCCCCChh
Q 010952 334 SLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAA----YLRNFKNLRSLEICGGGLTDA 405 (497)
Q Consensus 334 ~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~ 405 (497)
....+..+++|+.|++++|.+++.+. ..+..+++|+.|++++|.+.+.... .+..+++|++|++++|.+++.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 22334455666666666666664322 2233445677777777766544332 234566677777777776654
Q ss_pred hHHhhhh-----cCCCCeecccCCCCCChh----HHHHhhcCCCCcEEEeeCCccChhHH----HhhcCC-cccceeecc
Q 010952 406 GVKHIKD-----LSSLTLLNLSQNCNLTDK----TLELISGLTGLVSLNVSNSRITSAGL----RHLKPL-KNLRSLTLE 471 (497)
Q Consensus 406 ~~~~~~~-----l~~L~~L~l~~~~~l~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~----~~l~~~-~~L~~L~l~ 471 (497)
....+.. .+.|++|++++| .+++. ....+..+++|+.+++++|.+++... ..+... +.|+.+++.
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 4443322 257777777777 56522 23344455677777777777765432 233334 567777777
Q ss_pred cCCC
Q 010952 472 SCKV 475 (497)
Q Consensus 472 ~~~~ 475 (497)
++++
T Consensus 316 ~~~~ 319 (319)
T cd00116 316 DDSF 319 (319)
T ss_pred CCCC
Confidence 7653
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=5.6e-18 Score=157.92 Aligned_cols=259 Identities=27% Similarity=0.363 Sum_probs=128.9
Q ss_pred ccCCCCCCEEEeeccccCchh----HHhhhcCCCCcEEEccCCCCC------hHHHHHhhCCCCCcEEEcCCCCCChhHh
Q 010952 170 LSGLTNLKSLQISCSKVTDSG----IAYLKGLQKLTLLNLEGCPVT------AACLDSLSALGSLFYLNLNRCQLSDDGC 239 (497)
Q Consensus 170 l~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~------~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 239 (497)
+..++.|+.+++.++.+++.. ...+...+.+++++++++.+. ...+..+..+++|+.|++++|.+....+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 344455666666666554332 222334455555555555443 1122334444555555555554443333
Q ss_pred HhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHH----HHHhCC-CCCCEeeccCcccch----HH
Q 010952 240 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL----VNLTGL-CNLKCLELSDTQVGS----SG 310 (497)
Q Consensus 240 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~----~~l~~~-~~L~~L~l~~~~~~~----~~ 310 (497)
..+..+.+ . ++|+.|++++|.+.+... ..+..+ ++|+.|++++|.+.. ..
T Consensus 99 ~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 99 GVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 33322222 1 225555554444432111 122233 455555555555442 11
Q ss_pred HHhhcCCCCCCEEeccCCCCChHH----HHHhcCCCCCcEEEcCCCCCCHhHHH----HhcCCCCCcEEEecCCCcChHH
Q 010952 311 LRHLSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSG 382 (497)
Q Consensus 311 ~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~ 382 (497)
...+..+++|++|++++|.+.+.. ...+..+++|+.|++++|.+++.+.. .+..+++|+.|++++|.+++..
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 223344455666666666555322 12233445666666666666544332 2335666777777777666543
Q ss_pred HHHhh-c----cCCCCeeeecCCCCChhhH----HhhhhcCCCCeecccCCCCCChh----HHHHhhcC-CCCcEEEeeC
Q 010952 383 AAYLR-N----FKNLRSLEICGGGLTDAGV----KHIKDLSSLTLLNLSQNCNLTDK----TLELISGL-TGLVSLNVSN 448 (497)
Q Consensus 383 ~~~l~-~----~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~l~~~----~~~~l~~~-~~L~~L~l~~ 448 (497)
...+. . .+.|++|++++|.+++.+. ..+..+++|+.+++++| .+++. ....+... +.|+++++.+
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 33332 1 2577777777777663332 23344567777777777 66654 23333344 5777777776
Q ss_pred Cc
Q 010952 449 SR 450 (497)
Q Consensus 449 ~~ 450 (497)
++
T Consensus 317 ~~ 318 (319)
T cd00116 317 DS 318 (319)
T ss_pred CC
Confidence 65
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=3.6e-20 Score=162.19 Aligned_cols=131 Identities=23% Similarity=0.253 Sum_probs=96.0
Q ss_pred CCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCC-CCCChhHhHhhhcCCCCCEEEc
Q 010952 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNL 253 (497)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l 253 (497)
.-.++++..|+|+..++..|+.+++|+.|++++|.|+...+.+|.+++++..|-+.+ |.+.+.....|+.+..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456677778888877778888888888888888888777777888777777766655 7777766677777888888887
Q ss_pred cCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcc
Q 010952 254 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ 305 (497)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 305 (497)
..+++.......+..++++..|.+.++.+.......+.....++.+++..+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 7777776666777777888888877776655554556666677777766554
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=4.8e-19 Score=155.21 Aligned_cols=276 Identities=22% Similarity=0.235 Sum_probs=181.5
Q ss_pred CCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC-CCCChhHHHHhhCCCCcCEEeC
Q 010952 199 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLNL 277 (497)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l 277 (497)
.-..+++..|.|+...+.+|..+++|+.|++++|.+....+.+|..++++..|-+.+ |.++......|..+..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456789999999998889999999999999999999999999999999888887776 8888777778899999999999
Q ss_pred CCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCC-h--------H---HHHHhcCCCCCc
Q 010952 278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS-D--------G---SLRKLAGLSSLK 345 (497)
Q Consensus 278 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~--------~---~~~~l~~~~~L~ 345 (497)
.-+.+.-.....+..++++..|.+.+|.+.......+..+..++++.+..+.+. + . .+...+.+....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 888887777788889999999999988765554445566667777766554311 0 0 011111222222
Q ss_pred EEEcCCCCCCHhHHHHhc-CCCCCcEEEecCCCc-ChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccC
Q 010952 346 SLNLDARQITDTGLAALT-SLTGLTHLDLFGARI-TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 423 (497)
Q Consensus 346 ~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 423 (497)
...+.+.++..+....+. ....+.+-.-+.|.. ..-+...|..+++|++|++++|.++.+...+|.....+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 222222111111111111 111111111122222 222334466677777777777777776666666677777777777
Q ss_pred CCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCC
Q 010952 424 NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKV 475 (497)
Q Consensus 424 ~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 475 (497)
| ++....-.++.++..|+.|++++|+++...+.+|....+|.+|.+-.|++
T Consensus 308 N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 308 N-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred c-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 7 56655556666677777777777777766666677777777777766655
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1e-15 Score=152.38 Aligned_cols=264 Identities=21% Similarity=0.128 Sum_probs=129.8
Q ss_pred CCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 010952 150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 229 (497)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 229 (497)
.-..|+++.+. +. ..+..+. ++|+.|.+..|.++... . ..++|++|++++|.++.. |. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~-Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESG-LT-TLPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCC-CC-cCCcchh--cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 34556666542 32 1233332 35666666666665321 1 235666666666666542 21 2345666666
Q ss_pred CCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchH
Q 010952 230 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 309 (497)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 309 (497)
++|.+... +. ..+.|+.|++++|.+... +. ..++|+.|++++|.+...+. ...+|+.|++.+|.+...
T Consensus 270 s~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 270 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL 337 (788)
T ss_pred cCCchhhh-hh---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC----CcccccccccccCccccc
Confidence 66655432 11 124556666666655532 11 23456666666665543211 123455566666555431
Q ss_pred HHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhcc
Q 010952 310 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 389 (497)
Q Consensus 310 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 389 (497)
. . ..++|+.|++++|.+.... . ..++|+.|++.+|+++... . ...+|+.|++++|.++.. |. ..
T Consensus 338 P-~---lp~~Lq~LdLS~N~Ls~LP-~---lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~L-P~---l~ 401 (788)
T PRK15387 338 P-T---LPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSL-PV---LP 401 (788)
T ss_pred c-c---cccccceEecCCCccCCCC-C---CCcccceehhhccccccCc-c---cccccceEEecCCcccCC-CC---cc
Confidence 1 1 1135666666666554321 1 1235555666665555321 1 123566666666655532 11 13
Q ss_pred CCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhh
Q 010952 390 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHL 459 (497)
Q Consensus 390 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l 459 (497)
++|+.|++++|.+..+. .. ..+|+.|++++| .++. +|..+.++++|+.|++++|++++..+..+
T Consensus 402 s~L~~LdLS~N~LssIP-~l---~~~L~~L~Ls~N-qLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTSLP-ML---PSGLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCCCC-cc---hhhhhhhhhccC-cccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 45666666666655431 11 234555666665 4543 34455556666666666666655444433
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=6.8e-15 Score=146.64 Aligned_cols=263 Identities=21% Similarity=0.109 Sum_probs=121.0
Q ss_pred CCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEcc
Q 010952 127 LVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLE 206 (497)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 206 (497)
-..|+++++ .+...|..+. ++|+.|++.+|. ++.. +. ..++|++|++++|.++.. +. ..++|+.|+++
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~L-P~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF 270 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCc-CCCC-CC---CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence 445555553 2333443332 255566655532 2211 11 235566666665555532 11 12455556666
Q ss_pred CCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhH
Q 010952 207 GCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEG 286 (497)
Q Consensus 207 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 286 (497)
+|.+.. ++.. ..+|+.|++++|.+... +. ..++|+.|++++|.+... +. ...+|+.|++++|.+...+
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP 338 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CC---CcccccccccccCcccccc
Confidence 555543 2221 23455556665555432 11 134566666665555431 11 1234555555555544321
Q ss_pred HHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCC
Q 010952 287 LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLT 366 (497)
Q Consensus 287 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 366 (497)
. ...+|++|++++|.+.... . ..++|+.|++.+|.+... +. ...+|+.|++++|.++.... ..+
T Consensus 339 ~----lp~~Lq~LdLS~N~Ls~LP-~---lp~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt~LP~----l~s 402 (788)
T PRK15387 339 T----LPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSLPV----LPS 402 (788)
T ss_pred c----cccccceEecCCCccCCCC-C---CCcccceehhhccccccC-cc---cccccceEEecCCcccCCCC----ccc
Confidence 1 1134566666655554321 1 123455555555554421 11 12345566666655553211 124
Q ss_pred CCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHh
Q 010952 367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI 435 (497)
Q Consensus 367 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l 435 (497)
+|+.|++++|.+... |.. +.+|+.|++++|+++.+ |..+..+++|+.|++++| .+++..+..+
T Consensus 403 ~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N-~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCC-CCCchHHHHH
Confidence 556666666655542 211 23455556666655543 344555556666666666 4555444443
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.58 E-value=5.9e-15 Score=130.90 Aligned_cols=339 Identities=26% Similarity=0.402 Sum_probs=175.8
Q ss_pred CchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHhcCCceeEEEeeCCCCC--hHHHH-HhcCC-CCc
Q 010952 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT--DSGLI-HLKDC-SNL 77 (497)
Q Consensus 2 lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~--~~~~~-~l~~~-~~L 77 (497)
||+|+...||+.+ +..++.. |. +.+..|-..+. .....+++++...... +.+.. .+.+| ..|
T Consensus 75 LPpEl~lkvFS~L------Dtksl~r---~a----~~c~~~n~~Al-D~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~l 140 (483)
T KOG4341|consen 75 LPPELLLKVFSML------DTKSLCR---AA----QCCTMWNKLAL-DGSCWQHIDLFTFQRDVDGGVVENMISRCGGFL 140 (483)
T ss_pred CCHHHHHHHHHHH------hHHHHHH---HH----HHHHHhhhhhh-ccccceeeehhcchhcCCCcceehHhhhhcccc
Confidence 7999999999997 4444433 22 45666654443 4678888888775432 22222 23444 478
Q ss_pred CEEEccCccccChhHHHHh-hCCCCCCEEEcCCCCCCChHHHHHHh-CCCCCCEEeccCcccccccc--ccccCCCCCCE
Q 010952 78 QSLDFNFCIQISDGGLEHL-RGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHGGL--VNLKGLMKLES 153 (497)
Q Consensus 78 ~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~ 153 (497)
+.|.+++|..+.......+ ..++++++|.+.+|..+++.....++ .|++|++|++..|..++... .....|++|++
T Consensus 141 k~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~ 220 (483)
T KOG4341|consen 141 KELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKY 220 (483)
T ss_pred ccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHH
Confidence 8888888876655555544 36788888888888777776666665 47777777777766555433 12345667777
Q ss_pred EeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCCh-H-HHHHhhCCCCCcEEEcCC
Q 010952 154 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTA-A-CLDSLSALGSLFYLNLNR 231 (497)
Q Consensus 154 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~-~~~~l~~l~~L~~L~l~~ 231 (497)
|++++|+.+.+...+. ..++++.++.+...||.-.+ . +...-+.+..+..+++.+
T Consensus 221 lNlSwc~qi~~~gv~~-----------------------~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 221 LNLSWCPQISGNGVQA-----------------------LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred hhhccCchhhcCcchH-----------------------HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence 7777766555422221 12334444444444542211 1 111112334444555444
Q ss_pred CCC-ChhHhHhh-hcCCCCCEEEccCCC-CChhHHHHh-hCCCCcCEEeCCCC-CCCHhHHHHHh-CCCCCCEeeccCcc
Q 010952 232 CQL-SDDGCEKF-SKIGSLKVLNLGFNE-ITDECLVHL-KGLTNLESLNLDSC-GIGDEGLVNLT-GLCNLKCLELSDTQ 305 (497)
Q Consensus 232 ~~~-~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~-~l~~~~~~~l~-~~~~L~~L~l~~~~ 305 (497)
|.. ++...-.+ ..+..|+.++.+++. +++.....+ .++++|+.+-+..| ++++.....++ +++.|+.+++..+.
T Consensus 278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 432 21111111 234556666665543 222222222 34566666666666 33333333333 34556666665554
Q ss_pred cchHH-HHhh-cCCCCCCEEeccCC-CCChHHHHHhc----CCCCCcEEEcCCCCC-CHhHHHHhcCCCCCcEEEecCCC
Q 010952 306 VGSSG-LRHL-SGLTNLESINLSFT-GISDGSLRKLA----GLSSLKSLNLDARQI-TDTGLAALTSLTGLTHLDLFGAR 377 (497)
Q Consensus 306 ~~~~~-~~~l-~~~~~L~~L~l~~~-~~~~~~~~~l~----~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 377 (497)
..... ...+ .+++.|+.+.++.| .+++.+...+. ....++.+.++++.. ++.....+..+++|+.+++.+|+
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 32221 2222 34566666666655 23333222222 234455555555432 33333444555555555555553
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.53 E-value=1.3e-13 Score=119.81 Aligned_cols=192 Identities=23% Similarity=0.307 Sum_probs=113.4
Q ss_pred CCCCCCEeeccCcccchHHHH----hhcCCCCCCEEeccCCCCChHHHHH-------------hcCCCCCcEEEcCCCCC
Q 010952 292 GLCNLKCLELSDTQVGSSGLR----HLSGLTNLESINLSFTGISDGSLRK-------------LAGLSSLKSLNLDARQI 354 (497)
Q Consensus 292 ~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~ 354 (497)
.+|+|+.++|++|-++...+. .+..+..|++|.+.+|.++...... .+.-+.|+.+....|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 344555555555544433222 2234555555555555554322222 22346677777777766
Q ss_pred CHhHH----HHhcCCCCCcEEEecCCCcChHH----HHHhhccCCCCeeeecCCCCChhhHHhh----hhcCCCCeeccc
Q 010952 355 TDTGL----AALTSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLS 422 (497)
Q Consensus 355 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~~~~----~~l~~L~~L~l~ 422 (497)
.+.+. ..+...+.|+.+.++.|.+.... ...+.+|++|+.|++..|-++..+...+ +..++|++++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 55433 33445677777777777665433 2345677777777777777766554433 345777788888
Q ss_pred CCCCCChhHHHHh----h-cCCCCcEEEeeCCccChhHH----HhhcCCcccceeecccCCC--CHHHHHHHh
Q 010952 423 QNCNLTDKTLELI----S-GLTGLVSLNVSNSRITSAGL----RHLKPLKNLRSLTLESCKV--TANDIKRLQ 484 (497)
Q Consensus 423 ~~~~l~~~~~~~l----~-~~~~L~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~--~~~~~~~l~ 484 (497)
+| .+.......+ . ..|+|+.|.+.+|.++.... .++...|.|+.|++++|.+ .+.++..+.
T Consensus 250 dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~ 321 (382)
T KOG1909|consen 250 DC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA 321 (382)
T ss_pred cc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence 87 5655443332 2 46788888888887765433 2335577888888888887 555665554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=3.8e-14 Score=142.26 Aligned_cols=248 Identities=21% Similarity=0.234 Sum_probs=112.4
Q ss_pred CCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEcc
Q 010952 175 NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLG 254 (497)
Q Consensus 175 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 254 (497)
+...|++.+..++.. |..+. +.++.|++++|.+.. +|..+. ++|+.|++++|.+... +..+ .++|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSI-PATL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccC-Chhh--hccccEEECc
Confidence 345566665555532 22221 356666666666654 233222 3666666666665532 2222 2356666666
Q ss_pred CCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHH
Q 010952 255 FNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGS 334 (497)
Q Consensus 255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 334 (497)
+|.+... +..+. .+|+.|++++|.+... +..+ .++|+.|++++|.+.... ..+ .++|+.|++++|.+....
T Consensus 250 ~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 250 INRITEL-PERLP--SALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTALP 320 (754)
T ss_pred CCccCcC-ChhHh--CCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccccCC
Confidence 6665532 22221 3566666666555432 2111 135666666665544321 111 124555555555444211
Q ss_pred HHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcC
Q 010952 335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414 (497)
Q Consensus 335 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~ 414 (497)
.. -.++|+.|.+++|.++... ..+ .++|+.|++++|+++.. |..+ .++|+.|++++|.+.... ..+. .
T Consensus 321 -~~--l~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP-~~l~--~ 388 (754)
T PRK15370 321 -ET--LPPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLP-ENLP--A 388 (754)
T ss_pred -cc--ccccceeccccCCccccCC-hhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCC-HhHH--H
Confidence 11 1245555555555544321 111 24555555555555432 2222 245555555555555432 2221 2
Q ss_pred CCCeecccCCCCCChh---HHHHhhcCCCCcEEEeeCCccCh
Q 010952 415 SLTLLNLSQNCNLTDK---TLELISGLTGLVSLNVSNSRITS 453 (497)
Q Consensus 415 ~L~~L~l~~~~~l~~~---~~~~l~~~~~L~~L~l~~~~l~~ 453 (497)
+|+.|++++| ++... ++.....++.+..|++.+|++..
T Consensus 389 sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 389 ALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 4555555555 33321 12222233445555555555443
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.48 E-value=6.1e-13 Score=115.69 Aligned_cols=289 Identities=23% Similarity=0.296 Sum_probs=157.8
Q ss_pred hcCCCCcEEEccCCCCChHHH----HHhhCCCCCcEEEcCCCC---CChhHh-------HhhhcCCCCCEEEccCCCCCh
Q 010952 195 KGLQKLTLLNLEGCPVTAACL----DSLSALGSLFYLNLNRCQ---LSDDGC-------EKFSKIGSLKVLNLGFNEITD 260 (497)
Q Consensus 195 ~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~---~~~~~~-------~~l~~l~~L~~L~l~~~~~~~ 260 (497)
.....++++++++|.+..... ..+.+.++|+..++++-. .....+ ..+..+++|++++++.|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344455555555555433222 223344555555554422 111112 223345567777777665543
Q ss_pred h----HHHHhhCCCCcCEEeCCCCCCCHhHHHHHh-------------CCCCCCEeeccCcccchH----HHHhhcCCCC
Q 010952 261 E----CLVHLKGLTNLESLNLDSCGIGDEGLVNLT-------------GLCNLKCLELSDTQVGSS----GLRHLSGLTN 319 (497)
Q Consensus 261 ~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-------------~~~~L~~L~l~~~~~~~~----~~~~l~~~~~ 319 (497)
. ....+.++..|+.|++.+|.+.......++ .-++|+.+....|.+... ....+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 2 223455677788888877776554433321 235677777777765442 2234455677
Q ss_pred CCEEeccCCCCChHH----HHHhcCCCCCcEEEcCCCCCCHhHH----HHhcCCCCCcEEEecCCCcChHHHHHh-----
Q 010952 320 LESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLDLFGARITDSGAAYL----- 386 (497)
Q Consensus 320 L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l----- 386 (497)
|+.+.+..|.+.... ...+..++.|+.|++.+|.++..+. .+++.+++|+.|++++|.+...+..++
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 777777777654322 2445567778888887777766544 334466778888888887665544433
Q ss_pred hccCCCCeeeecCCCCChhhHHhh----hhcCCCCeecccCCCCC--ChhHHH-HhhcC----CCCcEEEeeCCccChhH
Q 010952 387 RNFKNLRSLEICGGGLTDAGVKHI----KDLSSLTLLNLSQNCNL--TDKTLE-LISGL----TGLVSLNVSNSRITSAG 455 (497)
Q Consensus 387 ~~~~~L~~L~l~~~~l~~~~~~~~----~~l~~L~~L~l~~~~~l--~~~~~~-~l~~~----~~L~~L~l~~~~l~~~~ 455 (497)
...|+|+++.+.+|.|+......+ ...+.|+.|+|++| ++ .+.... ....+ ..+.+.+-+.+.+.+..
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg 345 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELEREG 345 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHHHHhcccccccchhhchhHHHHHhhh
Confidence 346788888888887776544332 33577888888888 55 222222 22222 22334444444444332
Q ss_pred HH----hhcCCcccceeecccCCCCHHHHHHHh
Q 010952 456 LR----HLKPLKNLRSLTLESCKVTANDIKRLQ 484 (497)
Q Consensus 456 ~~----~l~~~~~L~~L~l~~~~~~~~~~~~l~ 484 (497)
-+ .......=+.+++.++.+++...+++.
T Consensus 346 ~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~~ 378 (382)
T KOG1909|consen 346 EEDEEEEVEKKETFKELNEDGEVIEEEGIEELK 378 (382)
T ss_pred hhHHHHHHHhcCcchhhcccccccchhHHHHhh
Confidence 21 122334445566666666666666553
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=4.2e-13 Score=134.77 Aligned_cols=227 Identities=15% Similarity=0.154 Sum_probs=111.8
Q ss_pred CCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEc
Q 010952 174 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNL 253 (497)
Q Consensus 174 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 253 (497)
++|+.|++++|.++.. +..+. ++|++|++++|.+.. +|..+. .+|+.|++++|.+... +..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~~L-P~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRITEL-PERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccCcC-ChhHh--CCCCEEEC
Confidence 3566666666666532 22221 356666666666553 233222 3566666666665532 22222 35666666
Q ss_pred cCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChH
Q 010952 254 GFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG 333 (497)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 333 (497)
++|.+.. .+..+ .++|+.|++++|.+...+. .+ .++|+.|++++|.+.... .. ..++|+.|++++|.++..
T Consensus 270 s~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~Lt~LP-~~--l~~sL~~L~Ls~N~Lt~L 340 (754)
T PRK15370 270 FHNKISC-LPENL--PEELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSLTALP-ET--LPPGLKTLEAGENALTSL 340 (754)
T ss_pred cCCccCc-ccccc--CCCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCccccCC-cc--ccccceeccccCCccccC
Confidence 6665553 22222 1356666666665543221 11 134566666666554321 11 124566666666655432
Q ss_pred HHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhh---HHhh
Q 010952 334 SLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG---VKHI 410 (497)
Q Consensus 334 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~---~~~~ 410 (497)
+..+ .++|+.|++++|.++.. +..+ .++|+.|++++|.++..++ .+ ...|+.|++++|++.... +...
T Consensus 341 -P~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP~-~l--~~sL~~LdLs~N~L~~LP~sl~~~~ 411 (754)
T PRK15370 341 -PASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLPE-NL--PAALQIMQASRNNLVRLPESLPHFR 411 (754)
T ss_pred -Chhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCCH-hH--HHHHHHHhhccCCcccCchhHHHHh
Confidence 2222 24666666666665532 2222 2466666666666654322 22 124666666666665431 1112
Q ss_pred hhcCCCCeecccCCCCCC
Q 010952 411 KDLSSLTLLNLSQNCNLT 428 (497)
Q Consensus 411 ~~l~~L~~L~l~~~~~l~ 428 (497)
..++++..+++.+| .++
T Consensus 412 ~~~~~l~~L~L~~N-pls 428 (754)
T PRK15370 412 GEGPQPTRIIVEYN-PFS 428 (754)
T ss_pred hcCCCccEEEeeCC-Ccc
Confidence 22355666666666 444
No 24
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.2e-13 Score=117.33 Aligned_cols=264 Identities=21% Similarity=0.228 Sum_probs=141.4
Q ss_pred CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEE
Q 010952 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL 80 (497)
Q Consensus 1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L 80 (497)
.||+|++..||+-|-+... .+.. .+|.+|-+.. .+-...+.+|+.+.++.......+.+ ....++
T Consensus 100 slpDEill~IFs~L~kk~L------L~~~-------~VC~Rfyr~~-~de~lW~~lDl~~r~i~p~~l~~l~~-rgV~v~ 164 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKEL------LKVS-------GVCKRFYRLA-SDESLWQTLDLTGRNIHPDVLGRLLS-RGVIVF 164 (419)
T ss_pred cCCHHHHHHHHHhccHHHH------HHHH-------HHHHHHhhcc-ccccceeeeccCCCccChhHHHHHHh-CCeEEE
Confidence 4899999999999844333 2222 3344443322 23356777777776665444443321 122233
Q ss_pred EccCccccChh-HHHHhhCC-CCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccC
Q 010952 81 DFNFCIQISDG-GLEHLRGL-SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKW 158 (497)
Q Consensus 81 ~l~~~~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 158 (497)
.+... ...+. ..+.+.-+ ..|++|+|+...+.....-..++.|.+|+.|.+.+..--......+++-.+|+.|+++.
T Consensus 165 Rlar~-~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 165 RLARS-FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred Ecchh-hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 33221 11111 11122111 24677777765544444455566677777777766432222224456666677777777
Q ss_pred CCCCCccccc-cccCCCCCCEEEeeccccCchhHHhh-h-cCCCCcEEEccCCC--CC-hHHHHHhhCCCCCcEEEcCCC
Q 010952 159 CNCITDSDMK-PLSGLTNLKSLQISCSKVTDSGIAYL-K-GLQKLTLLNLEGCP--VT-AACLDSLSALGSLFYLNLNRC 232 (497)
Q Consensus 159 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l-~-~l~~L~~L~l~~~~--~~-~~~~~~l~~l~~L~~L~l~~~ 232 (497)
|+.++..... -+.+|+.|.+|+++++.........+ . --++|..|+++|+. +. ..+....+.+++|..|++++|
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 6666544433 23466777777777666554333322 1 12466677777762 11 112223356777777777776
Q ss_pred CC-ChhHhHhhhcCCCCCEEEccCCCCCh-hHHHHhhCCCCcCEEeCCCC
Q 010952 233 QL-SDDGCEKFSKIGSLKVLNLGFNEITD-ECLVHLKGLTNLESLNLDSC 280 (497)
Q Consensus 233 ~~-~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 280 (497)
.. .......|.+++.|+++.++.|.... ...-.+...|.|.+|++.++
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 53 33334455667777777777764331 12223456677888887766
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.42 E-value=4.1e-13 Score=119.39 Aligned_cols=153 Identities=34% Similarity=0.494 Sum_probs=90.5
Q ss_pred CCCCCcEEEcCCC-CCCHhHHHHhc-CCCCCcEEEecCCC-cChHHHHHh-hccCCCCeeeecCCCCChhh-HHhh-hhc
Q 010952 340 GLSSLKSLNLDAR-QITDTGLAALT-SLTGLTHLDLFGAR-ITDSGAAYL-RNFKNLRSLEICGGGLTDAG-VKHI-KDL 413 (497)
Q Consensus 340 ~~~~L~~L~l~~~-~~~~~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~-~~~~-~~l 413 (497)
.+..|+.+..+++ .+++.....++ ++++|+.+.+..|+ +++.....+ .+++.|+.+++..+...... ..++ ..+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 3455555555553 34444343333 45666666666654 333333333 34566666666665433222 2222 345
Q ss_pred CCCCeecccCCCCCChhHHHHhh----cCCCCcEEEeeCCc-cChhHHHhhcCCcccceeecccC-CCCHHHHHHHhhcC
Q 010952 414 SSLTLLNLSQNCNLTDKTLELIS----GLTGLVSLNVSNSR-ITSAGLRHLKPLKNLRSLTLESC-KVTANDIKRLQSRD 487 (497)
Q Consensus 414 ~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~ 487 (497)
+.|+++.++.|..+++.....+. ....|+.+.+++|+ +++...+.+..+++|+.+++.+| .++...++.+. .+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~-~~ 450 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA-TH 450 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH-hh
Confidence 77777777777666665444443 34567777777776 45556677777888888888888 77778888877 77
Q ss_pred CCCCcc
Q 010952 488 LPNLVS 493 (497)
Q Consensus 488 ~p~L~~ 493 (497)
+|+++.
T Consensus 451 lp~i~v 456 (483)
T KOG4341|consen 451 LPNIKV 456 (483)
T ss_pred Ccccee
Confidence 787765
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.6e-13 Score=113.27 Aligned_cols=197 Identities=22% Similarity=0.250 Sum_probs=149.9
Q ss_pred CCCEeeccCcccchHH-HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCC-CCCHhHHH-HhcCCCCCcEE
Q 010952 295 NLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR-QITDTGLA-ALTSLTGLTHL 371 (497)
Q Consensus 295 ~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~-~~~~~~~L~~L 371 (497)
.+++++++...++... ...+..|.+|+.|.+.++.+.+.+...+++..+|+.++++.+ .++..+.. .+..|..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888888888777643 345677889999999999999888888999999999999885 66766553 45689999999
Q ss_pred EecCCCcChHHHHHh--hccCCCCeeeecCCC--CChhh-HHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEe
Q 010952 372 DLFGARITDSGAAYL--RNFKNLRSLEICGGG--LTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 446 (497)
Q Consensus 372 ~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~--l~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l 446 (497)
+++.|.........+ .--++|+.|+++|+. +.... ......+|+|..|+|++|-.++......+-+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999998665443322 345789999999863 22222 3344678999999999997788888888999999999999
Q ss_pred eCCc-cChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCcc
Q 010952 447 SNSR-ITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493 (497)
Q Consensus 447 ~~~~-l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~ 493 (497)
+.|. +.....-.+...|+|.+|++.+|- ++..++-+. ..+|+|+.
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v-sdt~mel~~-e~~~~lki 391 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCV-SDTTMELLK-EMLSHLKI 391 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecccc-CchHHHHHH-HhCccccc
Confidence 9996 333333456889999999999984 344455554 67888764
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4e-13 Score=120.14 Aligned_cols=209 Identities=25% Similarity=0.280 Sum_probs=99.4
Q ss_pred hCCCCcCEEeCCCCCCCHhHH-HHHhCCCCCCEeeccCcccch--HHHHhhcCCCCCCEEeccCCCCChHHHH-HhcCCC
Q 010952 267 KGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGS--SGLRHLSGLTNLESINLSFTGISDGSLR-KLAGLS 342 (497)
Q Consensus 267 ~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~ 342 (497)
.++.+|+.+.+.++.....+. .....+++++.|+++.|-+.. .....+..+|+|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345666777776664432221 233456666777776664433 2333445566666666666644321110 011345
Q ss_pred CCcEEEcCCCCCCHhHH-HHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhh-HHhhhhcCCCCeec
Q 010952 343 SLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLN 420 (497)
Q Consensus 343 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~ 420 (497)
.|+.|.++.|.++-... .....+|+|+.|++..|............+..|+.|++++|++.+.. ....+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 55666666665553322 22234566666666555311111111233445555666655544331 12234455555556
Q ss_pred ccCCCCCChhHHHH------hhcCCCCcEEEeeCCccChh-HHHhhcCCcccceeecccCCCC
Q 010952 421 LSQNCNLTDKTLEL------ISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVT 476 (497)
Q Consensus 421 l~~~~~l~~~~~~~------l~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~ 476 (497)
++.| ++++..... ...+++|++|++..|++.+. ....+..+++|+.+.+..+.++
T Consensus 278 ls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6555 444432111 13455556666655555332 1233444555555555555443
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=3.2e-14 Score=110.79 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=83.3
Q ss_pred hhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCC
Q 010952 96 LRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTN 175 (497)
Q Consensus 96 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 175 (497)
+..+.+|+.|++++|++ ...|..++.+++|+.|+++- ..+...+..++.+|.|++|++.+++--....+..+-.|..
T Consensus 52 ia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~t 128 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT 128 (264)
T ss_pred HHHhhhhhhhhcccchh--hhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHH
Confidence 34444555555555442 33455555555555555553 3455556666666777777776655444455556666677
Q ss_pred CCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCCh
Q 010952 176 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD 236 (497)
Q Consensus 176 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 236 (497)
|+.|.++++.+. ..|..++++++|+.|.+..|.+.. .|..++.+..|++|+|.+|.+..
T Consensus 129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeee
Confidence 777777777666 345556777777777777776654 56667777777777777776654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.9e-12 Score=114.72 Aligned_cols=201 Identities=18% Similarity=0.083 Sum_probs=93.8
Q ss_pred cCCCCCchhHHHHHHhcCCceeEEEeeCCCCC--hHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCC
Q 010952 33 LQYPGVNDKWMDVIASQGSSLLSVDLSGSDVT--DSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRN 110 (497)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 110 (497)
++..++.+.........+++++.|++++|-+. ..+.....++|+|+.|+++.|.-........-..+++|+.|.++.|
T Consensus 128 Ldn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C 207 (505)
T KOG3207|consen 128 LDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC 207 (505)
T ss_pred ecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccC
Confidence 33334444333223344566666666665333 1223334566666666666653111111111124455666666666
Q ss_pred CCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchh
Q 010952 111 NAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSG 190 (497)
Q Consensus 111 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 190 (497)
.............+|+|+.|.+..|...........-+..|+.|++++++.+........+.++.|+.|+++.+++.+..
T Consensus 208 Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~ 287 (505)
T KOG3207|consen 208 GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIA 287 (505)
T ss_pred CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhc
Confidence 54444444444556666666666553222222333444556666666655555444455555666666666555554322
Q ss_pred HH------hhhcCCCCcEEEccCCCCChH-HHHHhhCCCCCcEEEcCCCC
Q 010952 191 IA------YLKGLQKLTLLNLEGCPVTAA-CLDSLSALGSLFYLNLNRCQ 233 (497)
Q Consensus 191 ~~------~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 233 (497)
.. -...+++|++|.+..|++.+. ....+..+++|+.|.+..+.
T Consensus 288 ~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 288 EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 11 123345555555555544221 11223334444444444433
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.23 E-value=5.1e-14 Score=109.65 Aligned_cols=163 Identities=20% Similarity=0.148 Sum_probs=134.0
Q ss_pred cCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCC
Q 010952 49 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 128 (497)
Q Consensus 49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 128 (497)
.++++++|.+|++.++ .++..+..+.+|++|++.++ ++.. .+..++.++.|++|++.-|.. ...|..|+.+|.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nn-qie~-lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNN-QIEE-LPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccc-hhhh-cChhhhhchhhhheecchhhh--hcCccccCCCchhh
Confidence 3679999999999986 67778899999999999997 5654 688899999999999998874 56789999999999
Q ss_pred EEeccCccc-cccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccC
Q 010952 129 KLDLERCTR-IHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 207 (497)
Q Consensus 129 ~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 207 (497)
+|++.-+.. -...+..+-.+..|+.|.++.+... ..+..++++++|+.|.+.++.+- ..|..++.+..|+.|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 999986542 2345667777889999999986533 46788999999999999988866 4678888999999999999
Q ss_pred CCCChHHHHHhhC
Q 010952 208 CPVTAACLDSLSA 220 (497)
Q Consensus 208 ~~~~~~~~~~l~~ 220 (497)
|+++. .|..+++
T Consensus 183 nrl~v-lppel~~ 194 (264)
T KOG0617|consen 183 NRLTV-LPPELAN 194 (264)
T ss_pred ceeee-cChhhhh
Confidence 99876 3444444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=4.3e-11 Score=97.74 Aligned_cols=128 Identities=27% Similarity=0.322 Sum_probs=43.6
Q ss_pred CCCCcEEEcCCCCCCHhHHHHhc-CCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCee
Q 010952 341 LSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 419 (497)
Q Consensus 341 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 419 (497)
..++++|++.++.++.. +.++ .+.+|+.|++++|.++.. ..+..++.|++|++++|.|+.........+|+|++|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34566666666666552 3343 356677777777766653 234556777777777777766533222346777777
Q ss_pred cccCCCCCChh-HHHHhhcCCCCcEEEeeCCccChhHH---HhhcCCcccceeecccC
Q 010952 420 NLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESC 473 (497)
Q Consensus 420 ~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l~~~ 473 (497)
++++| ++.+. ....++.+++|+.|++.+||+.+..- ..+..+|+|+.||-..-
T Consensus 94 ~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 94 YLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 77777 55442 23456677778888888777764321 23456778887776543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=4.9e-11 Score=97.41 Aligned_cols=129 Identities=26% Similarity=0.378 Sum_probs=55.3
Q ss_pred hcCCCCCcEEEecCCCcChHHHHHhh-ccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCC
Q 010952 362 LTSLTGLTHLDLFGARITDSGAAYLR-NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 440 (497)
Q Consensus 362 ~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~ 440 (497)
+.+..++++|++.+|.+... +.+. .+.+|+.|++++|.|... ..+..++.|++|++++| .++.........+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNN-RISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCC-CCCccccchHHhCCc
Confidence 44566899999999998764 2344 578999999999999976 36777899999999999 888753322246899
Q ss_pred CcEEEeeCCccChh-HHHhhcCCcccceeecccCCCCH-HHHHHHhhcCCCCCccCC
Q 010952 441 LVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA-NDIKRLQSRDLPNLVSFR 495 (497)
Q Consensus 441 L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~p~L~~l~ 495 (497)
|+.|++++|.+.+. ....+..+++|+.|++.+|+++. ...+......+|+|+.|+
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 99999999998763 23667889999999999999875 455666667899999875
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=1.1e-10 Score=119.49 Aligned_cols=317 Identities=21% Similarity=0.225 Sum_probs=183.7
Q ss_pred CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccc-cChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQ-ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
..+|++.+-++.+. ....-..++.|++|-+..+.. +.....+.|.+++.|++|++++|. .-...|..++.+.+||+
T Consensus 523 ~~~rr~s~~~~~~~--~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE--HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh--hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhc
Confidence 45677777776542 222225677899998888642 444455667889999999999886 34567889999999999
Q ss_pred EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccc--cCchhHHhhhcCCCCcEEEccC
Q 010952 130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK--VTDSGIAYLKGLQKLTLLNLEG 207 (497)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~l~~l~~L~~L~l~~ 207 (497)
|++++ +.+...|..++++..|.+|++..+...... +.....+++|++|.+.... ........+..+.+|+.+.+..
T Consensus 600 L~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccC-CCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 99998 567788888999999999999876655432 3444568999999886543 2333445556666666666644
Q ss_pred CCCChHHHHHhhCCCCCc----EEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhh------CCCCcCEEeC
Q 010952 208 CPVTAACLDSLSALGSLF----YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLK------GLTNLESLNL 277 (497)
Q Consensus 208 ~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~------~~~~L~~L~l 277 (497)
... .....+..+..|+ .+.+.++.. ...+..++.+.+|+.|.+..+.+......... .++++..+.+
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 332 1222333333333 233222222 12234456778888888888776532221111 1233444444
Q ss_pred CCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChH-HHHHhcCCCCCcEEEcCCCCCCH
Q 010952 278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDARQITD 356 (497)
Q Consensus 278 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~ 356 (497)
..+.... .+...-..++|+.+.+..+...............+..+.+..+.+... .....+.++.+..+.+..-.+.+
T Consensus 755 ~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~ 833 (889)
T KOG4658|consen 755 LNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEE 833 (889)
T ss_pred hcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhh
Confidence 4442211 111123467888888888766555555555555555555555544332 22333445555555554433222
Q ss_pred hHHH---HhcCCCCCcEEEecCC
Q 010952 357 TGLA---ALTSLTGLTHLDLFGA 376 (497)
Q Consensus 357 ~~~~---~~~~~~~L~~L~l~~~ 376 (497)
.... ....+|.+.++.+.+|
T Consensus 834 ~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 834 LIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred eehhcCcccccCccccccceecc
Confidence 1111 1223555656666665
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=7.1e-11 Score=100.83 Aligned_cols=130 Identities=25% Similarity=0.323 Sum_probs=79.7
Q ss_pred CCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeec
Q 010952 341 LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 420 (497)
Q Consensus 341 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 420 (497)
...|+++++++|.++.. ...+.-.|.++.|+++.|.+.... .++.+++|+.|++++|.++... .+-.++.++++|.
T Consensus 283 Wq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhh-hhHhhhcCEeeee
Confidence 34566777777766653 233445677777777777766532 2556777777777777665441 1223456777777
Q ss_pred ccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh-HHHhhcCCcccceeecccCCCCH
Q 010952 421 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 421 l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~ 477 (497)
+++| .+.+ ...+..+-+|..|++++|++... ..+.++++|.|+.+.+.+|++..
T Consensus 359 La~N-~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQN-KIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhh-hHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777 4433 33455666777777777776543 33566777777777777776643
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=3.1e-10 Score=116.25 Aligned_cols=62 Identities=26% Similarity=0.331 Sum_probs=28.5
Q ss_pred hhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCC
Q 010952 194 LKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFN 256 (497)
Q Consensus 194 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 256 (497)
|..++.|++|++++|.-....|..++.+-+||+|+++++.+. ..|..++++..|.+|++..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccc
Confidence 444455555555544333334444444445555555444443 23344444444444444443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=2.7e-10 Score=97.37 Aligned_cols=127 Identities=26% Similarity=0.319 Sum_probs=63.4
Q ss_pred CCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeC
Q 010952 198 QKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNL 277 (497)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 277 (497)
+.|+.+++++|.++. +.+++.-.|+++.|++++|.+.... .++.+++|+.|++++|.++... ..=..+-++++|.+
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhh-hhHhhhcCEeeeeh
Confidence 345666666665544 3344455566666666666554322 2555566666666666554211 11123455555665
Q ss_pred CCCCCCHhHHHHHhCCCCCCEeeccCcccch-HHHHhhcCCCCCCEEeccCCCC
Q 010952 278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGI 330 (497)
Q Consensus 278 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~ 330 (497)
+.|.+. ....+.++-+|..|++++|++.. +....++++|.|+++.+.+|.+
T Consensus 360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 555432 12233344455555555555443 2234445555555555555543
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.90 E-value=1.4e-08 Score=85.82 Aligned_cols=206 Identities=19% Similarity=0.214 Sum_probs=107.2
Q ss_pred CCCCcEEEccCCCCChHHHHH----hhCCCCCcEEEcCCCCCC---hhH-------hHhhhcCCCCCEEEccCCCCChh-
Q 010952 197 LQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDG-------CEKFSKIGSLKVLNLGFNEITDE- 261 (497)
Q Consensus 197 l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~-------~~~l~~l~~L~~L~l~~~~~~~~- 261 (497)
+..+..+++++|.+......+ +++-.+|+..++++-... +.. ...+.++|+|+..+++.|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 445555555555554333322 233345555555442211 111 22344567777777776655432
Q ss_pred ---HHHHhhCCCCcCEEeCCCCCCCHhHHHHH-------------hCCCCCCEeeccCcccchH----HHHhhcCCCCCC
Q 010952 262 ---CLVHLKGLTNLESLNLDSCGIGDEGLVNL-------------TGLCNLKCLELSDTQVGSS----GLRHLSGLTNLE 321 (497)
Q Consensus 262 ---~~~~l~~~~~L~~L~l~~~~l~~~~~~~l-------------~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~ 321 (497)
..+.++..+.|.+|.+++|.+.......+ +.-|.|+.+....|.+... ....+.....|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 23445667778888888776543322222 1245677777766654321 122233345677
Q ss_pred EEeccCCCCChHHHH-----HhcCCCCCcEEEcCCCCCCHhHHH----HhcCCCCCcEEEecCCCcChHHHHHh------
Q 010952 322 SINLSFTGISDGSLR-----KLAGLSSLKSLNLDARQITDTGLA----ALTSLTGLTHLDLFGARITDSGAAYL------ 386 (497)
Q Consensus 322 ~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l------ 386 (497)
.+.+..|.+...+.. .+..+.+|+.|++.+|.++..+.. ++...+.|++|.+.+|-++..+...+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 777777666533222 223456777777777766655432 33345667777777776554433322
Q ss_pred hccCCCCeeeecCCCC
Q 010952 387 RNFKNLRSLEICGGGL 402 (497)
Q Consensus 387 ~~~~~L~~L~l~~~~l 402 (497)
...|+|..|...+|.+
T Consensus 269 ~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 269 KFVPNLMPLPGDYNER 284 (388)
T ss_pred hcCCCccccccchhhh
Confidence 2346666666665543
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.89 E-value=1.8e-08 Score=85.22 Aligned_cols=92 Identities=20% Similarity=0.296 Sum_probs=45.7
Q ss_pred HHHhhCCCCCcEEEcCCCCCChhHhHhhh----cCCCCCEEEccCCCCC---hh-------HHHHhhCCCCcCEEeCCCC
Q 010952 215 LDSLSALGSLFYLNLNRCQLSDDGCEKFS----KIGSLKVLNLGFNEIT---DE-------CLVHLKGLTNLESLNLDSC 280 (497)
Q Consensus 215 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~~~~~---~~-------~~~~l~~~~~L~~L~l~~~ 280 (497)
.+.+..+..+..+++++|.+......+++ .-.+|+..+++.-... +. ....+..||.|+..+++.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 34445567778888888887766665553 3345555554432111 11 1122334556666666555
Q ss_pred CCCHhHH----HHHhCCCCCCEeeccCccc
Q 010952 281 GIGDEGL----VNLTGLCNLKCLELSDTQV 306 (497)
Q Consensus 281 ~l~~~~~----~~l~~~~~L~~L~l~~~~~ 306 (497)
.+....+ ..++....|++|.+.+|.+
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 4432222 2233444555555555543
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.64 E-value=1e-07 Score=95.58 Aligned_cols=149 Identities=21% Similarity=0.306 Sum_probs=100.2
Q ss_pred CCCcEEEcCCCCC-CHhHHHHhc-CCCCCcEEEecCCCcC-hHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCe
Q 010952 342 SSLKSLNLDARQI-TDTGLAALT-SLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 418 (497)
Q Consensus 342 ~~L~~L~l~~~~~-~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 418 (497)
.+|+.|+++|... ....+..++ -+|+|++|.+.+-.+. +.+.....++|+|..||+++++++.. .+++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5677777776432 222222333 4788888888775543 33344457788888888888887776 56677888888
Q ss_pred ecccCCCCCC-hhHHHHhhcCCCCcEEEeeCCccChh--HH----HhhcCCcccceeecccCCCCHHHHHHHhhcCCCCC
Q 010952 419 LNLSQNCNLT-DKTLELISGLTGLVSLNVSNSRITSA--GL----RHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNL 491 (497)
Q Consensus 419 L~l~~~~~l~-~~~~~~l~~~~~L~~L~l~~~~l~~~--~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L 491 (497)
|.+.+- .+. ......+.++++|+.||+|+...... ++ +.-..+|.|+.||.+++.+++..++.+. ..-|+|
T Consensus 200 L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll-~sH~~L 277 (699)
T KOG3665|consen 200 LSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL-NSHPNL 277 (699)
T ss_pred HhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH-HhCccH
Confidence 888776 343 34556677888888888887643221 12 3335688999999999998888888887 566766
Q ss_pred ccC
Q 010952 492 VSF 494 (497)
Q Consensus 492 ~~l 494 (497)
..+
T Consensus 278 ~~i 280 (699)
T KOG3665|consen 278 QQI 280 (699)
T ss_pred hhh
Confidence 654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=7.7e-09 Score=69.30 Aligned_cols=60 Identities=35% Similarity=0.435 Sum_probs=37.2
Q ss_pred CCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCC
Q 010952 414 SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474 (497)
Q Consensus 414 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 474 (497)
|+|++|++++| +++...+..+.++++|+.|++++|.++...+..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35566666666 5555555555666666666666666666555666666666666666665
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=1.2e-09 Score=104.52 Aligned_cols=127 Identities=26% Similarity=0.297 Sum_probs=94.9
Q ss_pred CCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeeccc
Q 010952 343 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 422 (497)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 422 (497)
.|...++++|.+... ...+.-++.++.|++++|++++. +.+..+++|++||++.|.+....-.....|. |..|++.
T Consensus 165 ~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 455666677766543 24556678899999999998874 4778899999999999988776444444455 8999999
Q ss_pred CCCCCChhHHHHhhcCCCCcEEEeeCCccChh-HHHhhcCCcccceeecccCCCC
Q 010952 423 QNCNLTDKTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVT 476 (497)
Q Consensus 423 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~ 476 (497)
+| .++. ...+.++.+|+.||+++|-+.+. -..-+..+..|+.|++.||++-
T Consensus 241 nN-~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NN-ALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cc-HHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99 6665 45577889999999999976653 2244567888999999999873
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=1.8e-08 Score=67.53 Aligned_cols=59 Identities=36% Similarity=0.478 Sum_probs=32.8
Q ss_pred CCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCc
Q 010952 391 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSR 450 (497)
Q Consensus 391 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 450 (497)
+|++|++++|.+.......+..+++|++|++++| .++...+..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555554445555555555555555 5555445555555556666655554
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=5.6e-08 Score=83.37 Aligned_cols=153 Identities=24% Similarity=0.282 Sum_probs=90.6
Q ss_pred CCCCEEeccCCCCCh-HHHHHhcCCCCCcEEEcCCCCCCHhHH--H-HhcCCCCCcEEEecCCCcCh--HHHHHhhccCC
Q 010952 318 TNLESINLSFTGISD-GSLRKLAGLSSLKSLNLDARQITDTGL--A-ALTSLTGLTHLDLFGARITD--SGAAYLRNFKN 391 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~ 391 (497)
.+|++|.+.+..+.- .....+..+|.+++|.++.|.+..... . .-..-+.++++++..|...- .....-+.+|+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 455555555544331 112233455555666555552211100 0 00123466777777764221 01112245899
Q ss_pred CCeeeecCCCCChhhH-HhhhhcCCCCeecccCCCCCC-hhHHHHhhcCCCCcEEEeeCCccChhHHHh------hcCCc
Q 010952 392 LRSLEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLT-DKTLELISGLTGLVSLNVSNSRITSAGLRH------LKPLK 463 (497)
Q Consensus 392 L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~l~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~------l~~~~ 463 (497)
+..+.++.|++..... .....+|.+.-|+++.+ ++. ....+.+.+++.|..|.++++++.+..-.. ++.++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 9999999998876543 34556788889999998 554 446788999999999999999988754321 24567
Q ss_pred ccceeecc
Q 010952 464 NLRSLTLE 471 (497)
Q Consensus 464 ~L~~L~l~ 471 (497)
+++.|+=+
T Consensus 280 ~v~vLNGs 287 (418)
T KOG2982|consen 280 KVQVLNGS 287 (418)
T ss_pred ceEEecCc
Confidence 77766533
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=3.3e-08 Score=84.74 Aligned_cols=183 Identities=18% Similarity=0.169 Sum_probs=83.7
Q ss_pred CCCcEEEcCCCCCCh--hHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH-HhCCCCCCE
Q 010952 222 GSLFYLNLNRCQLSD--DGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN-LTGLCNLKC 298 (497)
Q Consensus 222 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-l~~~~~L~~ 298 (497)
+.++.+++.+|.+.+ +....+.++|.|++|+++.|++............+|+.+.+.+..+....... +..+|+++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 445555555554432 11223345555555555555554322111124455566666555444333222 234556666
Q ss_pred eeccCcccchHHH--Hhh-cCCCCCCEEeccCCCCChH--HHHHhcCCCCCcEEEcCCCCCCHhHH-HHhcCCCCCcEEE
Q 010952 299 LELSDTQVGSSGL--RHL-SGLTNLESINLSFTGISDG--SLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLD 372 (497)
Q Consensus 299 L~l~~~~~~~~~~--~~l-~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 372 (497)
|+++.|.+..... ... ..-+.++++....|..... ....-.-+|++..+.++.|.+..... .....+|.+.-|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 6666553221100 001 1122444444444422111 11112235666666666665543221 2333455555666
Q ss_pred ecCCCcCh-HHHHHhhccCCCCeeeecCCCCCh
Q 010952 373 LFGARITD-SGAAYLRNFKNLRSLEICGGGLTD 404 (497)
Q Consensus 373 l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~ 404 (497)
+..+++.. ...+++..++.|..|.++++++.+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 66666543 223445666667666666666543
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=9e-08 Score=96.27 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=68.1
Q ss_pred CcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEee
Q 010952 368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 447 (497)
Q Consensus 368 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~ 447 (497)
++.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++| .++..+|..++++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence 556666666666666666666667777777776666655656666677777777776 6666666666667777777777
Q ss_pred CCccChhHHHhhcC-CcccceeecccCC
Q 010952 448 NSRITSAGLRHLKP-LKNLRSLTLESCK 474 (497)
Q Consensus 448 ~~~l~~~~~~~l~~-~~~L~~L~l~~~~ 474 (497)
+|.+++..+..+.. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 77666655555543 2345566666653
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.50 E-value=3.6e-07 Score=91.74 Aligned_cols=154 Identities=25% Similarity=0.340 Sum_probs=93.3
Q ss_pred CCCCCEEeccCCCC-ChHHHHHhc-CCCCCcEEEcCCCCCCHhH-HHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCC
Q 010952 317 LTNLESINLSFTGI-SDGSLRKLA-GLSSLKSLNLDARQITDTG-LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 393 (497)
Q Consensus 317 ~~~L~~L~l~~~~~-~~~~~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 393 (497)
..+|++|+++|... ....+..++ -+|+|++|.+.+-.+.... .....++|+|..|+++++.++.. ..+..+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 35677777776532 222233333 4677777777776554432 23345677777777777777654 4456677777
Q ss_pred eeeecCCCCCh-hhHHhhhhcCCCCeecccCCCCCChh--HHHHhh---cCCCCcEEEeeCCccChhHHHhh-cCCcccc
Q 010952 394 SLEICGGGLTD-AGVKHIKDLSSLTLLNLSQNCNLTDK--TLELIS---GLTGLVSLNVSNSRITSAGLRHL-KPLKNLR 466 (497)
Q Consensus 394 ~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~l~---~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~ 466 (497)
.|.+.+=.+.. .....+-.+.+|+.||+|......+. +-..+. .+|+|+.||.+++.+.+...+.+ ...|+|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 77777655543 22334455778888888776433322 222222 47888888888888877666554 4566777
Q ss_pred eeeccc
Q 010952 467 SLTLES 472 (497)
Q Consensus 467 ~L~l~~ 472 (497)
.+.+-+
T Consensus 279 ~i~~~~ 284 (699)
T KOG3665|consen 279 QIAALD 284 (699)
T ss_pred hhhhhh
Confidence 666554
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=1.5e-07 Score=90.45 Aligned_cols=195 Identities=35% Similarity=0.481 Sum_probs=95.7
Q ss_pred EEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCC-CCCCEeeccCcccchHHHHhhcCCCCCCEEeccCC
Q 010952 250 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGL-CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 328 (497)
Q Consensus 250 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 328 (497)
.++...+.+... ...+...+.++.+.+.++.+....+ ..... ++|+.|+++++.+... +..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 455555554211 1223344566777776665554332 12233 2666666666665443 133455666666666666
Q ss_pred CCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHH
Q 010952 329 GISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK 408 (497)
Q Consensus 329 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~ 408 (497)
.+.+... .....+.|+.|+++++++...... ......|+++.+++|.+... +..+..+.++..+.+.+|++... +.
T Consensus 174 ~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDLPK-LLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhhh-hhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeec-cc
Confidence 5554322 122455666666666655553221 12233456666666532211 22334455555555555554432 23
Q ss_pred hhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh
Q 010952 409 HIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 454 (497)
Q Consensus 409 ~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~ 454 (497)
.++.+++++.|++++| .+++... ++...+++.|+++++.+...
T Consensus 250 ~~~~l~~l~~L~~s~n-~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 250 SIGNLSNLETLDLSNN-QISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hhccccccceeccccc-ccccccc--ccccCccCEEeccCcccccc
Confidence 3444455555555555 4444222 45555555555555554443
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=2.8e-07 Score=92.83 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=66.4
Q ss_pred CcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccC
Q 010952 344 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 423 (497)
Q Consensus 344 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 423 (497)
++.|+++++.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666555555566666666666666666665566666666666666666666666566666666666666666
Q ss_pred CCCCChhHHHHhhc-CCCCcEEEeeCCc
Q 010952 424 NCNLTDKTLELISG-LTGLVSLNVSNSR 450 (497)
Q Consensus 424 ~~~l~~~~~~~l~~-~~~L~~L~l~~~~ 450 (497)
| .++...|..+.. ..++..+++.+|+
T Consensus 500 N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 N-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred C-cccccCChHHhhccccCceEEecCCc
Confidence 6 566555555543 2345566666654
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.34 E-value=1.3e-08 Score=94.87 Aligned_cols=174 Identities=19% Similarity=0.121 Sum_probs=129.6
Q ss_pred ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952 52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 131 (497)
Q Consensus 52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 131 (497)
-....+++.|.+. .+|.....|..|+.+.++.| .+. ..+.++..+..|.+|+++.|+. ...|..+..|+ |+.|-
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n-~~r-~ip~~i~~L~~lt~l~ls~Nql--S~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHN-CIR-TIPEAICNLEALTFLDLSSNQL--SHLPDGLCDLP-LKVLI 149 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhc-cce-ecchhhhhhhHHHHhhhccchh--hcCChhhhcCc-ceeEE
Confidence 3455567776654 56666777788888888775 233 3577788888889999998874 45566666665 78888
Q ss_pred ccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCC
Q 010952 132 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 211 (497)
Q Consensus 132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 211 (497)
+++ +++...+..++..+.|..|+.+.|...+ .+..++.+.+|+.|.+..|.+... +..+..++ |.+|+++.|++.
T Consensus 150 ~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~~l-p~El~~Lp-Li~lDfScNkis 224 (722)
T KOG0532|consen 150 VSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLEDL-PEELCSLP-LIRLDFSCNKIS 224 (722)
T ss_pred Eec-CccccCCcccccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhhhC-CHHHhCCc-eeeeecccCcee
Confidence 887 4677788888888889999988866544 667788888888888888877743 44444444 788999999887
Q ss_pred hHHHHHhhCCCCCcEEEcCCCCCChh
Q 010952 212 AACLDSLSALGSLFYLNLNRCQLSDD 237 (497)
Q Consensus 212 ~~~~~~l~~l~~L~~L~l~~~~~~~~ 237 (497)
. +|..|.+|++|++|-|.+|.+..-
T Consensus 225 ~-iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 225 Y-LPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred e-cchhhhhhhhheeeeeccCCCCCC
Confidence 7 678889999999999998887653
No 50
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.30 E-value=3.6e-06 Score=83.43 Aligned_cols=60 Identities=33% Similarity=0.488 Sum_probs=26.0
Q ss_pred CCCcCEEeCCCCC-CCHhHHHHHhC-CCCCCEeeccCcc-cchHHHHh-hcCCCCCCEEeccCC
Q 010952 269 LTNLESLNLDSCG-IGDEGLVNLTG-LCNLKCLELSDTQ-VGSSGLRH-LSGLTNLESINLSFT 328 (497)
Q Consensus 269 ~~~L~~L~l~~~~-l~~~~~~~l~~-~~~L~~L~l~~~~-~~~~~~~~-l~~~~~L~~L~l~~~ 328 (497)
+.+|+.+++.++. +++.....++. +++|+.|.+..+. +++..... ...++.|++|++++|
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 3445555555443 33333333332 4455555544443 23322222 223455555555554
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=7.7e-07 Score=85.47 Aligned_cols=196 Identities=25% Similarity=0.287 Sum_probs=135.2
Q ss_pred EEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCC-CCCEEEcCCCCCCChHHHHHHhCCCCCCEEecc
Q 010952 55 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLS-NLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 133 (497)
Q Consensus 55 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (497)
.++...+.+. .....+.....++.|.+.++ .+.. .+....... +|++|+++++.. ..++..+..+++|+.|+++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n-~i~~-i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNN-NITD-IPPLIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCc-cccc-Cccccccchhhcccccccccch--hhhhhhhhccccccccccC
Confidence 4666665542 22333455678899999886 4443 233344453 899999999874 3445678889999999999
Q ss_pred CccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChH
Q 010952 134 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAA 213 (497)
Q Consensus 134 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 213 (497)
+| .+...+......+.|+.|+++++. +.+ .+..+.....|+++.++.+.+. ..+..+.++..+..+.+.++++..
T Consensus 172 ~N-~l~~l~~~~~~~~~L~~L~ls~N~-i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~- 246 (394)
T COG4886 172 FN-DLSDLPKLLSNLSNLNNLDLSGNK-ISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED- 246 (394)
T ss_pred Cc-hhhhhhhhhhhhhhhhheeccCCc-ccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-
Confidence 85 355566555578899999998844 332 2233334556888888888533 234556777788888888887654
Q ss_pred HHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhH
Q 010952 214 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 262 (497)
Q Consensus 214 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 262 (497)
.+..+..++.++.|++++|.+..... ++.+.+++.++++++.+....
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 24567788889999999998876544 778899999999988776433
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=6.5e-08 Score=92.93 Aligned_cols=243 Identities=28% Similarity=0.356 Sum_probs=134.5
Q ss_pred CCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEe
Q 010952 220 ALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCL 299 (497)
Q Consensus 220 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 299 (497)
.+..++.+.+..+.+.. ....+..+.+++.+++..|.+.... ..+..+++|+.|++++|.+.... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhh
Confidence 34455555555555443 1222456677777777777766422 11556777777777777665432 23445557777
Q ss_pred eccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCc
Q 010952 300 ELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 378 (497)
Q Consensus 300 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 378 (497)
++.+|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.... .+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 7777776542 334446677777777776654433 2 355667777777776655422 122223333335555554
Q ss_pred ChHHHHHhhccC--CCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh--
Q 010952 379 TDSGAAYLRNFK--NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA-- 454 (497)
Q Consensus 379 ~~~~~~~l~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~-- 454 (497)
+...+ +...+ +|+.+.+++|++.... ..+..+..+..+++.++ ++.. ...+...+.+..+....+.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSN-RISN--LEGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhc-cccc--cccccccchHHHhccCcchhcchhh
Confidence 43211 11122 2677777777766542 34445567777777776 4433 12233445555556666654421
Q ss_pred HHHh--hcCCcccceeecccCCCCH
Q 010952 455 GLRH--LKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 455 ~~~~--l~~~~~L~~L~l~~~~~~~ 477 (497)
..+. ....+.++.+.+..+++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhccccccccccccccccccCcccc
Confidence 1111 3556777788887776544
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.25 E-value=5.8e-06 Score=81.97 Aligned_cols=110 Identities=30% Similarity=0.302 Sum_probs=54.2
Q ss_pred cCCCCCEEEccCCCCChh--HHHHhhCCCCcCEEeCCCC--CCCHh---HHHHHhCCCCCCEeeccCcc-cchHHHHhhc
Q 010952 244 KIGSLKVLNLGFNEITDE--CLVHLKGLTNLESLNLDSC--GIGDE---GLVNLTGLCNLKCLELSDTQ-VGSSGLRHLS 315 (497)
Q Consensus 244 ~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~--~l~~~---~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~ 315 (497)
..+.|+.+.+..+..... .......++.|+.|+++++ ..... .......+++|+.++++.+. +++.....++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666665532221 2233445666777766652 11111 11122334566666666655 4444444443
Q ss_pred C-CCCCCEEeccCCC-CChHHHHHh-cCCCCCcEEEcCCCC
Q 010952 316 G-LTNLESINLSFTG-ISDGSLRKL-AGLSSLKSLNLDARQ 353 (497)
Q Consensus 316 ~-~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~ 353 (497)
. +++|+.|.+.+|. +++.+...+ ..++.|++|++++|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2 5666666655554 444444333 245666666666553
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=9.5e-08 Score=91.81 Aligned_cols=218 Identities=34% Similarity=0.371 Sum_probs=138.8
Q ss_pred cCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEE
Q 010952 244 KIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESI 323 (497)
Q Consensus 244 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 323 (497)
.+..++.+.++.+.+.. ....+..+.+++.+++.++.+..... .+..+++|++|++++|.+++. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhh
Confidence 44556666666666553 22335667888888888887754322 156678888888888887664 345556668888
Q ss_pred eccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH-HHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCC
Q 010952 324 NLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 402 (497)
Q Consensus 324 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 402 (497)
++.+|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.... .+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 8888877643 223346778888888887776443 2 456778888888888765422 222233344446666665
Q ss_pred ChhhHHhhhhcC--CCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCC
Q 010952 403 TDAGVKHIKDLS--SLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 476 (497)
Q Consensus 403 ~~~~~~~~~~l~--~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 476 (497)
+.... +..+. .|+.+++++| .+... +..+..+..+..|++.++.+... +.+...+.+..++...+.+.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n-~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGN-RISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred eeccC--cccchhHHHHHHhcccC-ccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 54321 11222 3788888888 55542 14566778888888888876652 34556667777777777655
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=9.1e-08 Score=91.96 Aligned_cols=202 Identities=27% Similarity=0.272 Sum_probs=114.0
Q ss_pred HHhcCCceeEEEeeCCCCChHH-HHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCC
Q 010952 46 IASQGSSLLSVDLSGSDVTDSG-LIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGL 124 (497)
Q Consensus 46 ~~~~~~~l~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l 124 (497)
+..-.+++++|.+-...-.+.. |-.|.-|.+||+|.+++|+--...+...+.+ .|++|-.+.. .+..-..|+.+
T Consensus 79 i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~--qLe~LIC~~S---l~Al~~v~asc 153 (1096)
T KOG1859|consen 79 ILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRH--QLEKLICHNS---LDALRHVFASC 153 (1096)
T ss_pred HHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHH--hhhhhhhhcc---HHHHHHHHHHh
Confidence 3344567777777664333333 6667888999999999995323333333322 3455543332 12222222211
Q ss_pred --------C--CCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhh
Q 010952 125 --------I--NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL 194 (497)
Q Consensus 125 --------~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 194 (497)
+ .|...+++- +.+...-.++.-++.|+.|++++|. +. ....+..+++|++|+|+.|.+....-...
T Consensus 154 ggd~~ns~~Wn~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk-~~--~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~ 229 (1096)
T KOG1859|consen 154 GGDISNSPVWNKLATASFSY-NRLVLMDESLQLLPALESLNLSHNK-FT--KVDNLRRLPKLKHLDLSYNCLRHVPQLSM 229 (1096)
T ss_pred ccccccchhhhhHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhh-hh--hhHHHHhcccccccccccchhccccccch
Confidence 0 344444443 2344444556666777788887743 32 23466777788888887777664433333
Q ss_pred hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChh-HhHhhhcCCCCCEEEccCCCCC
Q 010952 195 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDD-GCEKFSKIGSLKVLNLGFNEIT 259 (497)
Q Consensus 195 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 259 (497)
.+++ |..|.+.+|.++. ...+.++.+|+.|++++|-+.+. ....+..+..|..|.+.||.+.
T Consensus 230 ~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 230 VGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4444 7777777776654 34567777777788777654321 1223344566677777776553
No 56
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.99 E-value=1.8e-07 Score=87.48 Aligned_cols=191 Identities=19% Similarity=0.209 Sum_probs=119.4
Q ss_pred CEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCC
Q 010952 273 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 352 (497)
Q Consensus 273 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 352 (497)
...+++.|.+.. .+..++.+..|+.+.++.|.+... +..+.++..|+.++++.|.++.. +..+..+| |+.|.+++|
T Consensus 78 ~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhcccccccc-CchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecC
Confidence 345566665543 233344455666677766655433 45566677788888887766532 22333333 777777777
Q ss_pred CCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHH
Q 010952 353 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 432 (497)
Q Consensus 353 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 432 (497)
+++.. +..++..++|..|+.+.|.+... +..+.++.+|+.|.++.|++... +..+. .-.|..|+++.| +++. +|
T Consensus 154 kl~~l-p~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~l-p~El~-~LpLi~lDfScN-kis~-iP 227 (722)
T KOG0532|consen 154 KLTSL-PEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDL-PEELC-SLPLIRLDFSCN-KISY-LP 227 (722)
T ss_pred ccccC-CcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhC-CHHHh-CCceeeeecccC-ceee-cc
Confidence 77653 34455667788888888876654 45566777788888887777766 33444 345677788777 6665 46
Q ss_pred HHhhcCCCCcEEEeeCCccChhHHHhh--cCCcccceeecccC
Q 010952 433 ELISGLTGLVSLNVSNSRITSAGLRHL--KPLKNLRSLTLESC 473 (497)
Q Consensus 433 ~~l~~~~~L~~L~l~~~~l~~~~~~~l--~~~~~L~~L~l~~~ 473 (497)
..+.++..|++|-|.+|++.....+.. +...--++|+.+-|
T Consensus 228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 667778888888888888776443322 23344556666666
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=1.1e-05 Score=65.57 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=57.1
Q ss_pred CCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhH-HHHhhcCCCCcEEE
Q 010952 367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLN 445 (497)
Q Consensus 367 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~ 445 (497)
....+++++|.+... ..+..++.|.+|.+.+|+|+.+.+..-..+++|+.|.+.+| .+.+.. ...+..||.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 344455555544331 22344555666666666666554444344566666666666 444332 33455667777777
Q ss_pred eeCCccChhHH---HhhcCCcccceeecccC
Q 010952 446 VSNSRITSAGL---RHLKPLKNLRSLTLESC 473 (497)
Q Consensus 446 l~~~~l~~~~~---~~l~~~~~L~~L~l~~~ 473 (497)
+-+|+.+...- ..+..+|+|+.||+++=
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77776654322 22356777777777654
No 58
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=2.8e-05 Score=63.45 Aligned_cols=82 Identities=33% Similarity=0.498 Sum_probs=44.0
Q ss_pred CCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhc-CCCCcEEEeeCC-ccChhHHHhhcCCcccceee
Q 010952 392 LRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG-LTGLVSLNVSNS-RITSAGLRHLKPLKNLRSLT 469 (497)
Q Consensus 392 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~-~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~ 469 (497)
++.++.+++.|..++.+.+..+++++.|.+.+|..+.+...+.+++ .++|+.|+|++| ++++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 3444445555555555555555555555555555455544444442 355555555555 35555555555555566555
Q ss_pred cccC
Q 010952 470 LESC 473 (497)
Q Consensus 470 l~~~ 473 (497)
+.+=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 5554
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=6.6e-06 Score=62.49 Aligned_cols=110 Identities=19% Similarity=0.242 Sum_probs=62.5
Q ss_pred CCcEEEcCCCCCCHh--HHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeec
Q 010952 343 SLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 420 (497)
Q Consensus 343 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 420 (497)
.+..++++.|++... ....+.....|+..++++|.+.+..+..-..+|.++.|++.+|.+.+. |..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcc
Confidence 345556666654421 122333445566667777766655444445566677777777777666 33366667777777
Q ss_pred ccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhH
Q 010952 421 LSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAG 455 (497)
Q Consensus 421 l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 455 (497)
++.| .+... |+.+..+.++..|+.-+|.+....
T Consensus 107 l~~N-~l~~~-p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFN-PLNAE-PRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccC-ccccc-hHHHHHHHhHHHhcCCCCccccCc
Confidence 7776 34332 344444566666666666554433
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=6.7e-05 Score=45.75 Aligned_cols=36 Identities=33% Similarity=0.472 Sum_probs=16.5
Q ss_pred CCcEEEeeCCccChhHHHhhcCCcccceeecccCCCC
Q 010952 440 GLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 476 (497)
Q Consensus 440 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 476 (497)
+|++|++++|++++.. ..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCC
Confidence 4455555555555422 23455555555555555544
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=1.7e-05 Score=67.91 Aligned_cols=110 Identities=20% Similarity=0.321 Sum_probs=80.3
Q ss_pred CCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhH-HHHhhcCCCCcE
Q 010952 365 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVS 443 (497)
Q Consensus 365 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~ 443 (497)
+.+.++|++++|.+++. .....++.|+.|.++-|.|+... .+..|..|++|+|..| .|.+.. ...+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 56788899999998874 34578899999999999988753 4567899999999988 666542 567778888999
Q ss_pred EEeeCCccChhHH-----HhhcCCcccceeecccCCCCHHHHH
Q 010952 444 LNVSNSRITSAGL-----RHLKPLKNLRSLTLESCKVTANDIK 481 (497)
Q Consensus 444 L~l~~~~l~~~~~-----~~l~~~~~L~~L~l~~~~~~~~~~~ 481 (497)
|.|..|+=.+... ..+..+|+|+.|| +=.+++..++
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle 133 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELE 133 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHH
Confidence 9888887443322 2345678888775 2266666655
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=2.5e-05 Score=59.46 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=39.1
Q ss_pred CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCee
Q 010952 340 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLL 419 (497)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 419 (497)
+...|+..++++|.+.+.....-..+|.++.+++.+|.+.+. |..+..++.|+.++++.|.+... ++.+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHh
Confidence 334444445555544444333333444555555555555443 22245555555555555555444 3333334444445
Q ss_pred cccCC
Q 010952 420 NLSQN 424 (497)
Q Consensus 420 ~l~~~ 424 (497)
+..+|
T Consensus 129 ds~~n 133 (177)
T KOG4579|consen 129 DSPEN 133 (177)
T ss_pred cCCCC
Confidence 54444
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=2.3e-05 Score=67.11 Aligned_cols=102 Identities=22% Similarity=0.243 Sum_probs=76.2
Q ss_pred CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhh-HHhhhhcCCCCe
Q 010952 340 GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTL 418 (497)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~ 418 (497)
.+.+.+.|++++|.+++ +.....++.|+.|.++-|+|+... .+..|.+|++|.+..|.|.+.. ...+.++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 35678889999999988 455678999999999999988753 4578999999999999887652 234567899999
Q ss_pred ecccCCCCCChhHH----HHhhcCCCCcEEE
Q 010952 419 LNLSQNCNLTDKTL----ELISGLTGLVSLN 445 (497)
Q Consensus 419 L~l~~~~~l~~~~~----~~l~~~~~L~~L~ 445 (497)
|.|..|+--...+. ..+.-+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99988853333222 2345678888774
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.42 E-value=0.0002 Score=43.65 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=13.0
Q ss_pred CcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCC
Q 010952 368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT 403 (497)
Q Consensus 368 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 403 (497)
|+.|++++|+++.. +..+..+++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 44444444444432 112334444444444444433
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00018 Score=58.87 Aligned_cols=81 Identities=22% Similarity=0.198 Sum_probs=39.4
Q ss_pred ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952 52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 131 (497)
Q Consensus 52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 131 (497)
....++|+++++. ....|..++.|..|.+.+| .+....+.--..+++|+.|.+.+|.+..-....-+..||.|++|.
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3445555555442 2333555566666666555 444433333334455666666665532222223344555555555
Q ss_pred ccCc
Q 010952 132 LERC 135 (497)
Q Consensus 132 l~~~ 135 (497)
+-+|
T Consensus 120 ll~N 123 (233)
T KOG1644|consen 120 LLGN 123 (233)
T ss_pred ecCC
Confidence 5554
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.00027 Score=57.82 Aligned_cols=82 Identities=33% Similarity=0.446 Sum_probs=55.5
Q ss_pred eeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhC-CCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952 53 LLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 131 (497)
Q Consensus 53 l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 131 (497)
++.++=+++.+.......+.+++.++.|.+.+|..+.+...+.+++ .++|+.|++++|+-+++.....+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4566666666666667777777777777777776666666666653 457777777777666666666677777777776
Q ss_pred ccC
Q 010952 132 LER 134 (497)
Q Consensus 132 l~~ 134 (497)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 665
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.15 E-value=0.0002 Score=56.54 Aligned_cols=8 Identities=13% Similarity=0.472 Sum_probs=3.0
Q ss_pred CCCCeecc
Q 010952 414 SSLTLLNL 421 (497)
Q Consensus 414 ~~L~~L~l 421 (497)
++|+.+.+
T Consensus 81 ~~l~~i~~ 88 (129)
T PF13306_consen 81 TNLKNIDI 88 (129)
T ss_dssp TTECEEEE
T ss_pred cccccccc
Confidence 33333333
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.00022 Score=60.85 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=48.9
Q ss_pred HhcCCCCCcEEEecCC--CcChHHHHHhhccCCCCeeeecCCCCChhh-HHhhhhcCCCCeecccCCCC--CChhHHHHh
Q 010952 361 ALTSLTGLTHLDLFGA--RITDSGAAYLRNFKNLRSLEICGGGLTDAG-VKHIKDLSSLTLLNLSQNCN--LTDKTLELI 435 (497)
Q Consensus 361 ~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~--l~~~~~~~l 435 (497)
.+..+|+|+.|.++.| .+..........+|+|+++++++|++.... ...+..+.+|..|++.+|.. +.+---..+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 3445666677777666 444333333345577777777777665421 23345566677777777732 122222334
Q ss_pred hcCCCCcEEEeeCCc
Q 010952 436 SGLTGLVSLNVSNSR 450 (497)
Q Consensus 436 ~~~~~L~~L~l~~~~ 450 (497)
.-+++|++|+-.+..
T Consensus 140 ~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVD 154 (260)
T ss_pred HHhhhhccccccccC
Confidence 455666666655443
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.07 E-value=0.00028 Score=55.69 Aligned_cols=121 Identities=23% Similarity=0.336 Sum_probs=45.5
Q ss_pred hcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCC
Q 010952 314 LSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLR 393 (497)
Q Consensus 314 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 393 (497)
+..+++|+.+.+.. .+.......+.++++|+.+.+..+ +...+...+..+++++.+.+.+ .+.......+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33445555555543 233333334455555666666543 3333334455565666666654 23222333455566666
Q ss_pred eeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCC
Q 010952 394 SLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 441 (497)
Q Consensus 394 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L 441 (497)
.+++..+ +.......+..+ .|+.+.+.++ +.......+.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 6666543 444444445554 6666655542 333333444444443
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.05 E-value=0.0024 Score=59.64 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=27.4
Q ss_pred hhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCC
Q 010952 266 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT 328 (497)
Q Consensus 266 l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 328 (497)
+..+.+++.|+++.|.+...+ .-.++|++|.+++|..-...+..+ .++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 344566677777766554322 112346666666543222212211 235566666555
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.94 E-value=0.00026 Score=68.30 Aligned_cols=83 Identities=24% Similarity=0.209 Sum_probs=38.8
Q ss_pred CCEEeccCCCCCCcccc----ccccCCCCCCEEEeeccccCchhHHhhh----cC-CCCcEEEccCCCCChH----HHHH
Q 010952 151 LESLNIKWCNCITDSDM----KPLSGLTNLKSLQISCSKVTDSGIAYLK----GL-QKLTLLNLEGCPVTAA----CLDS 217 (497)
Q Consensus 151 L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~~~~----~~~~ 217 (497)
+.++.+.+|.... ... ..+..+++|..|+++++.+.+.....+. .. +.+++|++..|.++.. +...
T Consensus 89 l~~L~L~~~~l~~-~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGD-RGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCcccc-chHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 5566666644222 222 3334556666666666666654443331 11 3344455555544321 2233
Q ss_pred hhCCCCCcEEEcCCCCC
Q 010952 218 LSALGSLFYLNLNRCQL 234 (497)
Q Consensus 218 l~~l~~L~~L~l~~~~~ 234 (497)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 33344555555555443
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.82 E-value=0.0025 Score=59.50 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=51.4
Q ss_pred HHhhcCCCCCCEEeccCCCCChHHHHHhcCC-CCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhcc
Q 010952 311 LRHLSGLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 389 (497)
Q Consensus 311 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 389 (497)
...+..+.+++.|++++|.+.... .+ ++|+.|.+.+|.--...+..+ .++|+.|.+++|...... .
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P 111 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------P 111 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------c
Confidence 334556799999999999765432 33 469999998854322223333 368999999998422211 3
Q ss_pred CCCCeeeecCCCC
Q 010952 390 KNLRSLEICGGGL 402 (497)
Q Consensus 390 ~~L~~L~l~~~~l 402 (497)
++|+.|++.++..
T Consensus 112 ~sLe~L~L~~n~~ 124 (426)
T PRK15386 112 ESVRSLEIKGSAT 124 (426)
T ss_pred cccceEEeCCCCC
Confidence 5677888776554
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.00074 Score=57.79 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=7.8
Q ss_pred CCCCCEEEeeccccC
Q 010952 173 LTNLKSLQISCSKVT 187 (497)
Q Consensus 173 l~~L~~L~l~~~~~~ 187 (497)
+|+|+++++++|++.
T Consensus 90 ~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIK 104 (260)
T ss_pred CCceeEEeecCCccc
Confidence 355555555555544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.62 E-value=0.00042 Score=66.97 Aligned_cols=182 Identities=30% Similarity=0.413 Sum_probs=91.6
Q ss_pred cCEEeCCCCCCCHhHH----HHHhCCCCCCEeeccCcccchHHHHhhc----CC-CCCCEEeccCCCCChHH----HHHh
Q 010952 272 LESLNLDSCGIGDEGL----VNLTGLCNLKCLELSDTQVGSSGLRHLS----GL-TNLESINLSFTGISDGS----LRKL 338 (497)
Q Consensus 272 L~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~----~~~l 338 (497)
+..+.+..|.+..... ..+...+.|+.|++++|.++......+. .. ..+++|.+..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5666666665544333 3344567777788887777654433332 11 34556666666554332 2333
Q ss_pred cCCCCCcEEEcCCCCCCHhHH----HHhc----CCCCCcEEEecCCCcChHHHH----HhhccCC-CCeeeecCCCCChh
Q 010952 339 AGLSSLKSLNLDARQITDTGL----AALT----SLTGLTHLDLFGARITDSGAA----YLRNFKN-LRSLEICGGGLTDA 405 (497)
Q Consensus 339 ~~~~~L~~L~l~~~~~~~~~~----~~~~----~~~~L~~L~l~~~~~~~~~~~----~l~~~~~-L~~L~l~~~~l~~~ 405 (497)
.....++.+++..|.+...+. ..+. ...++++|++.+|.++..... .+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445666666666665533221 1111 234566666666665533221 2233333 55566666665554
Q ss_pred hHHhhh----hc-CCCCeecccCCCCCChhHHH----HhhcCCCCcEEEeeCCccChh
Q 010952 406 GVKHIK----DL-SSLTLLNLSQNCNLTDKTLE----LISGLTGLVSLNVSNSRITSA 454 (497)
Q Consensus 406 ~~~~~~----~l-~~L~~L~l~~~~~l~~~~~~----~l~~~~~L~~L~l~~~~l~~~ 454 (497)
+...+. .+ +.+++++++.| .+++.... .+..++.++++.+++|++.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 333221 12 34456666666 44443322 233445556666666655543
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.71 E-value=0.021 Score=29.42 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=13.1
Q ss_pred cccceeecccCCCCHHHHHHHh
Q 010952 463 KNLRSLTLESCKVTANDIKRLQ 484 (497)
Q Consensus 463 ~~L~~L~l~~~~~~~~~~~~l~ 484 (497)
++|++|++++|.+++.+++.+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5666777777777766666653
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.26 E-value=0.057 Score=28.43 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=18.2
Q ss_pred CcccceeecccC-CCCHHHHHHHh
Q 010952 462 LKNLRSLTLESC-KVTANDIKRLQ 484 (497)
Q Consensus 462 ~~~L~~L~l~~~-~~~~~~~~~l~ 484 (497)
+++|+.|++++| .+++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 467888888888 68888887775
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.44 E-value=0.091 Score=27.62 Aligned_cols=23 Identities=48% Similarity=0.931 Sum_probs=12.3
Q ss_pred CCCcCEEEccCccccChhHHHHh
Q 010952 74 CSNLQSLDFNFCIQISDGGLEHL 96 (497)
Q Consensus 74 ~~~L~~L~l~~~~~~~~~~~~~~ 96 (497)
|++|++|++++|..+++.....+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 35556666666555555444443
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.21 E-value=0.047 Score=28.04 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=12.0
Q ss_pred CCCcEEEeeCCccChhHHHhh
Q 010952 439 TGLVSLNVSNSRITSAGLRHL 459 (497)
Q Consensus 439 ~~L~~L~l~~~~l~~~~~~~l 459 (497)
++|++|+|++|++++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566777777777666655544
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.05 E-value=0.059 Score=27.00 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=8.2
Q ss_pred CCcEEEeeCCccC
Q 010952 440 GLVSLNVSNSRIT 452 (497)
Q Consensus 440 ~L~~L~l~~~~l~ 452 (497)
+|++|++++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3566666666666
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.62 E-value=0.19 Score=23.30 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=5.0
Q ss_pred CCcEEEeeCCccC
Q 010952 440 GLVSLNVSNSRIT 452 (497)
Q Consensus 440 ~L~~L~l~~~~l~ 452 (497)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.62 E-value=0.34 Score=26.00 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.1
Q ss_pred cccceeecccCCCCHHHHHHHh
Q 010952 463 KNLRSLTLESCKVTANDIKRLQ 484 (497)
Q Consensus 463 ~~L~~L~l~~~~~~~~~~~~l~ 484 (497)
++|+.|++++|.+.+.+...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5788888888888888887775
No 82
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=87.38 E-value=1.1 Score=27.64 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHh
Q 010952 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIAS 48 (497)
Q Consensus 1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (497)
.||+|++.+||+++ ++..... +. .++..|...+..
T Consensus 3 ~LP~Eil~~If~~L------~~~dl~~---~~----~vcr~w~~~~~~ 37 (47)
T PF12937_consen 3 SLPDEILLEIFSYL------DPRDLLR---LS----LVCRRWRRIAND 37 (47)
T ss_dssp CS-HHHHHHHHTTS-------HHHHHH---HT----TSSHHHHHHHTC
T ss_pred HhHHHHHHHHHhcC------CHHHHHH---HH----HHHHHHHHHHCC
Confidence 48999999999986 3333322 33 778888777643
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.12 E-value=1.1 Score=23.34 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=8.6
Q ss_pred CCCcEEEeeCCccChhH
Q 010952 439 TGLVSLNVSNSRITSAG 455 (497)
Q Consensus 439 ~~L~~L~l~~~~l~~~~ 455 (497)
++|+.|++++|.+....
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 34555555555554443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.12 E-value=1.1 Score=23.34 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=8.6
Q ss_pred CCCcEEEeeCCccChhH
Q 010952 439 TGLVSLNVSNSRITSAG 455 (497)
Q Consensus 439 ~~L~~L~l~~~~l~~~~ 455 (497)
++|+.|++++|.+....
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 34555555555554443
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.32 E-value=3.2 Score=40.36 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=37.0
Q ss_pred hccCCCCeeeecCCCCChhhH--HhhhhcCCCCeecccCCCCCChhHHHHhh--cCCCCcEEEeeCCccCh
Q 010952 387 RNFKNLRSLEICGGGLTDAGV--KHIKDLSSLTLLNLSQNCNLTDKTLELIS--GLTGLVSLNVSNSRITS 453 (497)
Q Consensus 387 ~~~~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~l~--~~~~L~~L~l~~~~l~~ 453 (497)
.+.|.+..+.+++|++..... ......|.|+.|+|++|...... ...+. +..-|++|-+.+|++.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCcccc
Confidence 456777788888887654321 11123478888888887222111 11222 23456777777777654
No 86
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=73.33 E-value=5.9 Score=24.23 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=20.3
Q ss_pred CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHH
Q 010952 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIA 47 (497)
Q Consensus 1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (497)
.||.|++.+||+++ +......++ .++..|...+.
T Consensus 5 ~LP~~il~~Il~~l------~~~~~~~l~-------~vsk~~~~~~~ 38 (48)
T PF00646_consen 5 DLPDEILQEILSYL------DPKDLLRLS-------LVSKRWRSLVD 38 (48)
T ss_dssp HS-HHHHHHHHHTS-------HHHHHHHC-------TT-HHHHHHHT
T ss_pred HCCHHHHHHHHHHC------cHHHHHHHH-------HHhhHHHHHHc
Confidence 38999999999997 333333322 55666665543
No 87
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=65.12 E-value=8.4 Score=22.36 Aligned_cols=13 Identities=38% Similarity=0.805 Sum_probs=12.1
Q ss_pred CchHHHHHHHHhh
Q 010952 2 LPRDISQQIFNEL 14 (497)
Q Consensus 2 lp~~~~~~~~~~l 14 (497)
||+|++..||.++
T Consensus 1 lP~~ll~~I~~~l 13 (41)
T smart00256 1 LPDEILEEILSKL 13 (41)
T ss_pred CCHHHHHHHHHcC
Confidence 7999999999987
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.87 E-value=7 Score=20.50 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=10.6
Q ss_pred cccceeecccCCCCH
Q 010952 463 KNLRSLTLESCKVTA 477 (497)
Q Consensus 463 ~~L~~L~l~~~~~~~ 477 (497)
.+|+.|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 567778888877643
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=54.73 E-value=0.33 Score=41.29 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=42.8
Q ss_pred hcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCC
Q 010952 338 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 417 (497)
Q Consensus 338 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 417 (497)
+..+...+.|+++.+++...+ ..++.+..+.+++++.+.+... |..+.....+..++...|..... |..+++.|+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhC-CccccccCCcc
Confidence 344555556666555444322 1223345556666666654432 33333444444555555544443 45556666666
Q ss_pred eecccCC
Q 010952 418 LLNLSQN 424 (497)
Q Consensus 418 ~L~l~~~ 424 (497)
++++.++
T Consensus 115 ~~e~k~~ 121 (326)
T KOG0473|consen 115 KNEQKKT 121 (326)
T ss_pred hhhhccC
Confidence 6666666
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.16 E-value=33 Score=33.77 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=19.8
Q ss_pred HHhcCCceeEEEeeCCCCChH-HHHHh-cCCCCcCEEEccCc
Q 010952 46 IASQGSSLLSVDLSGSDVTDS-GLIHL-KDCSNLQSLDFNFC 85 (497)
Q Consensus 46 ~~~~~~~l~~L~l~~~~~~~~-~~~~l-~~~~~L~~L~l~~~ 85 (497)
+..+.+.+..+++++|.+-.. ....+ ...|+|..|+|++|
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 334556666666666554211 11112 34566666666665
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=48.04 E-value=10 Score=19.87 Aligned_cols=15 Identities=53% Similarity=0.669 Sum_probs=10.1
Q ss_pred CCCcEEEeeCCccCh
Q 010952 439 TGLVSLNVSNSRITS 453 (497)
Q Consensus 439 ~~L~~L~l~~~~l~~ 453 (497)
++|+.|++++|+++.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 356777777777665
No 92
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=43.50 E-value=0.93 Score=38.68 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=66.5
Q ss_pred hcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCC
Q 010952 362 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 441 (497)
Q Consensus 362 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L 441 (497)
+..+...+.|+++.+++...... +..+..+..|+++.|.+... +..+++...+..+++..| ..+ ..|......+.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n-~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKN-NHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhcc-chh-hCCccccccCCc
Confidence 44567788889888876554322 34566778888888877655 566677777777887777 333 356777888999
Q ss_pred cEEEeeCCccChhHHHhhc
Q 010952 442 VSLNVSNSRITSAGLRHLK 460 (497)
Q Consensus 442 ~~L~l~~~~l~~~~~~~l~ 460 (497)
++++...+++.......+.
T Consensus 114 k~~e~k~~~~~~~~~~~v~ 132 (326)
T KOG0473|consen 114 KKNEQKKTEFFRKLFGFVW 132 (326)
T ss_pred chhhhccCcchHHHHhHhh
Confidence 9999999987765543333
No 93
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=43.29 E-value=17 Score=18.97 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=11.8
Q ss_pred cceeecccCCCCHH-HHHHHhhcCCC
Q 010952 465 LRSLTLESCKVTAN-DIKRLQSRDLP 489 (497)
Q Consensus 465 L~~L~l~~~~~~~~-~~~~l~~~~~p 489 (497)
|++|.+....+.++ .++.+. .+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~Ll-S~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLL-SGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhh-ccCc
Confidence 55555555544333 455554 4443
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=38.08 E-value=1.1e+02 Score=29.63 Aligned_cols=272 Identities=17% Similarity=0.059 Sum_probs=121.7
Q ss_pred CCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhh---hcCCCCcEEEccCCCCChHHHHHhhC---CC
Q 010952 149 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYL---KGLQKLTLLNLEGCPVTAACLDSLSA---LG 222 (497)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~l~~---l~ 222 (497)
+.+++++++.+. ..+..+-.+..-. --+.++.+..++..+..+ +.-..+.+++++.+.....++..+.. -.
T Consensus 165 pr~r~~dls~np-i~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPNP-IGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCCc-ccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 456667776633 3333332222110 003344444444333322 12235667777777655444443322 23
Q ss_pred CCcEEEcCCCCCChhH---hHhhhcCCCCCEEEccCCCCCh--------hHHHHhhCCCCcCEEeCCCCCCCHhHHHHHh
Q 010952 223 SLFYLNLNRCQLSDDG---CEKFSKIGSLKVLNLGFNEITD--------ECLVHLKGLTNLESLNLDSCGIGDEGLVNLT 291 (497)
Q Consensus 223 ~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~--------~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~ 291 (497)
-++.++.+...+.-+. +-..+.-++++..+++.+.... ...+.+..-+++ +|++..+....+.+..+-
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~L 320 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSML 320 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhh
Confidence 4555555554332111 1112233456666665543321 111223344556 666666654433322210
Q ss_pred -C-CCC----CCEeeccCcccch-HHHHhhcCCCCCCEEeccCCCCChHHH--HHhcCCCCCcEEEcCCCCC---CHh--
Q 010952 292 -G-LCN----LKCLELSDTQVGS-SGLRHLSGLTNLESINLSFTGISDGSL--RKLAGLSSLKSLNLDARQI---TDT-- 357 (497)
Q Consensus 292 -~-~~~----L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~---~~~-- 357 (497)
. -++ =-++++..|.... ........-.+++++.+..+....... ..+..-++.+.+.+.+... ...
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~ 400 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSST 400 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccc
Confidence 0 000 1233444443222 122222233458888887775543222 1333456777777655211 110
Q ss_pred HHHHh----cCCCCCcEEEecCCCcChHH---HHHhhccCCCCeeeecCCCCChhhHHhhh----hcCCCCeecccCC
Q 010952 358 GLAAL----TSLTGLTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTLLNLSQN 424 (497)
Q Consensus 358 ~~~~~----~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~l~~~~~~~~~----~l~~L~~L~l~~~ 424 (497)
..... ...--++.+.++.|...... ...+..-+.+..|++++|...+.+...+. ....++.+..+.|
T Consensus 401 ~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 401 EAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred cchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC
Confidence 00001 12234667777777655332 22334567788888888876654433322 2245555555555
No 95
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=30.91 E-value=67 Score=29.52 Aligned_cols=18 Identities=39% Similarity=0.346 Sum_probs=9.1
Q ss_pred cCCCCcEEEeeCCccChh
Q 010952 437 GLTGLVSLNVSNSRITSA 454 (497)
Q Consensus 437 ~~~~L~~L~l~~~~l~~~ 454 (497)
-+..|+.|++.+|.|++.
T Consensus 253 ~n~sl~slnvesnFItg~ 270 (353)
T KOG3735|consen 253 ENKSLTSLNVESNFITGL 270 (353)
T ss_pred hcchhhheeccccccccH
Confidence 344555555555555543
Done!