Query 010952
Match_columns 497
No_of_seqs 270 out of 2954
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.9E-46 1.7E-50 384.7 7.3 421 48-476 175-717 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-45 4.1E-50 381.7 7.2 421 49-473 198-737 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.4E-44 4.7E-49 366.1 14.6 421 51-477 33-537 (606)
4 3t6q_A CD180 antigen; protein- 100.0 2E-43 6.9E-48 357.6 14.7 424 48-477 54-561 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-41 7.7E-46 347.1 14.4 130 363-494 477-614 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 9.3E-42 3.2E-46 345.4 10.8 432 50-495 31-551 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-41 5E-46 348.5 12.4 191 301-494 388-589 (680)
8 2z63_A TOLL-like receptor 4, v 100.0 5.1E-42 1.8E-46 345.0 3.3 419 50-477 27-532 (570)
9 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-39 5.7E-44 325.0 21.3 416 50-478 25-512 (549)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-41 6.3E-46 343.2 4.8 417 48-477 53-559 (606)
11 3j0a_A TOLL-like receptor 5; m 100.0 6E-41 2E-45 350.2 5.4 163 49-212 22-188 (844)
12 4eco_A Uncharacterized protein 100.0 3.3E-41 1.1E-45 340.8 2.2 435 31-479 58-603 (636)
13 4ecn_A Leucine-rich repeat pro 100.0 9.6E-41 3.3E-45 342.4 2.4 435 31-479 300-843 (876)
14 2z63_A TOLL-like receptor 4, v 100.0 2.8E-40 9.7E-45 332.4 3.4 395 48-454 49-533 (570)
15 2p1m_B Transport inhibitor res 100.0 1.5E-35 5.2E-40 299.4 36.2 469 1-492 8-534 (594)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-38 8.8E-43 314.0 13.2 410 51-477 21-482 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-38 1.6E-42 314.6 14.3 424 55-496 9-504 (549)
18 3ogk_B Coronatine-insensitive 100.0 9.3E-36 3.2E-40 300.8 29.4 469 2-493 16-542 (592)
19 4eco_A Uncharacterized protein 100.0 1E-38 3.5E-43 322.5 6.1 407 75-495 81-593 (636)
20 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-38 8.8E-43 330.3 6.7 417 54-477 7-518 (844)
21 4ecn_A Leucine-rich repeat pro 100.0 9.7E-37 3.3E-41 312.8 9.2 405 75-495 323-833 (876)
22 1z7x_W Ribonuclease inhibitor; 100.0 3E-34 1E-38 280.7 26.1 391 75-494 3-460 (461)
23 2z7x_B TOLL-like receptor 1, v 100.0 8.3E-36 2.8E-40 296.0 14.4 392 47-453 41-482 (520)
24 3v47_A TOLL-like receptor 5B a 100.0 1.6E-35 5.5E-40 289.1 13.7 361 100-477 30-409 (455)
25 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-32 6E-37 268.1 35.0 353 50-405 2-413 (461)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-35 1.4E-39 293.2 13.7 412 51-477 31-511 (562)
27 3v47_A TOLL-like receptor 5B a 100.0 1.1E-34 3.8E-39 283.2 13.8 382 54-454 13-410 (455)
28 1o6v_A Internalin A; bacterial 100.0 6E-32 2E-36 263.8 25.7 345 50-453 45-389 (466)
29 1o6v_A Internalin A; bacterial 100.0 3.6E-32 1.2E-36 265.4 24.0 346 73-477 44-389 (466)
30 4g8a_A TOLL-like receptor 4; l 100.0 6E-34 2E-38 290.3 11.7 423 51-477 52-581 (635)
31 4fmz_A Internalin; leucine ric 100.0 4E-31 1.4E-35 248.3 24.5 285 170-476 62-346 (347)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-32 4.6E-37 275.1 13.4 389 50-453 51-511 (562)
33 2p1m_B Transport inhibitor res 100.0 1E-29 3.5E-34 256.8 34.1 425 45-474 60-542 (594)
34 2id5_A Lingo-1, leucine rich r 100.0 1.2E-32 4.3E-37 270.0 9.8 302 149-452 32-333 (477)
35 4fmz_A Internalin; leucine ric 100.0 3.2E-30 1.1E-34 242.1 25.2 305 98-452 42-346 (347)
36 3ogk_B Coronatine-insensitive 100.0 3E-30 1E-34 260.4 26.5 425 44-473 66-548 (592)
37 2id5_A Lingo-1, leucine rich r 100.0 8.5E-32 2.9E-36 264.1 12.4 320 103-428 14-333 (477)
38 3o6n_A APL1; leucine-rich repe 100.0 5.6E-31 1.9E-35 251.2 14.5 316 124-484 44-360 (390)
39 4g8a_A TOLL-like receptor 4; l 100.0 6.5E-31 2.2E-35 267.9 8.3 413 75-496 52-574 (635)
40 3o6n_A APL1; leucine-rich repe 100.0 1.5E-29 5E-34 241.4 16.6 314 98-456 43-356 (390)
41 3oja_B Anopheles plasmodium-re 100.0 4.1E-30 1.4E-34 258.4 12.9 315 124-483 50-365 (597)
42 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-29 8.7E-34 243.0 13.7 346 50-459 41-394 (457)
43 3bz5_A Internalin-J, INLJ; leu 100.0 2.6E-29 9E-34 242.9 13.8 321 49-433 62-392 (457)
44 1jl5_A Outer protein YOPM; leu 100.0 1.1E-29 3.9E-34 245.3 10.5 371 50-477 10-410 (454)
45 3oja_B Anopheles plasmodium-re 100.0 1.1E-28 3.8E-33 247.9 15.7 312 99-431 50-361 (597)
46 1xku_A Decorin; proteoglycan, 99.9 1.8E-27 6E-32 221.6 10.1 289 150-474 32-330 (330)
47 1jl5_A Outer protein YOPM; leu 99.9 1.2E-27 4.1E-32 231.1 8.5 372 49-479 32-432 (454)
48 1xku_A Decorin; proteoglycan, 99.9 6.2E-27 2.1E-31 217.9 12.9 288 126-449 32-329 (330)
49 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-27 4.1E-32 222.8 5.4 290 150-474 34-331 (332)
50 1ogq_A PGIP-2, polygalacturona 99.9 7.1E-28 2.4E-32 221.8 0.8 238 42-283 38-281 (313)
51 2ft3_A Biglycan; proteoglycan, 99.9 7.1E-27 2.4E-31 217.6 7.0 287 126-449 34-330 (332)
52 1ogq_A PGIP-2, polygalacturona 99.9 6.5E-28 2.2E-32 222.1 -0.5 249 198-474 50-302 (313)
53 2ast_B S-phase kinase-associat 99.9 3.9E-25 1.3E-29 206.6 17.2 260 1-280 11-282 (336)
54 2z80_A TOLL-like receptor 2, v 99.9 5.9E-26 2E-30 213.3 9.5 278 173-477 30-315 (353)
55 2z80_A TOLL-like receptor 2, v 99.9 4.6E-25 1.6E-29 207.2 8.4 274 147-424 29-311 (353)
56 3o53_A Protein LRIM1, AGAP0063 99.9 4.7E-25 1.6E-29 203.6 2.5 255 178-447 14-270 (317)
57 2ca6_A RAN GTPase-activating p 99.9 1.3E-22 4.5E-27 192.9 18.8 259 214-473 24-340 (386)
58 3zyi_A Leucine-rich repeat-con 99.9 6.5E-24 2.2E-28 206.2 8.5 246 200-451 56-302 (452)
59 2z66_A Variable lymphocyte rec 99.9 1.4E-24 4.7E-29 199.8 3.6 247 201-452 10-261 (306)
60 3zyj_A Leucine-rich repeat-con 99.9 6E-24 2.1E-28 205.7 8.3 246 200-451 45-291 (440)
61 3zyi_A Leucine-rich repeat-con 99.9 4.3E-24 1.5E-28 207.4 7.2 245 176-425 56-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 4.3E-24 1.5E-28 206.7 7.1 245 176-425 45-290 (440)
63 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-24 8.9E-29 195.7 5.1 205 174-402 32-237 (285)
64 2ca6_A RAN GTPase-activating p 99.9 5.4E-22 1.8E-26 188.7 21.1 257 192-449 26-340 (386)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-24 3.8E-29 201.0 1.5 259 200-473 12-272 (317)
66 2ast_B S-phase kinase-associat 99.9 6E-22 2.1E-26 184.9 19.8 223 200-449 49-282 (336)
67 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-23 4.5E-28 191.1 8.0 224 225-452 14-238 (285)
68 4fcg_A Uncharacterized protein 99.9 1.5E-23 5.2E-28 194.0 7.7 231 50-303 80-310 (328)
69 2z66_A Variable lymphocyte rec 99.9 2.1E-23 7E-28 192.0 8.4 247 54-306 10-260 (306)
70 3goz_A Leucine-rich repeat-con 99.9 2.5E-22 8.7E-27 188.9 15.1 222 203-424 3-263 (362)
71 1wwl_A Monocyte differentiatio 99.9 1.2E-24 4.2E-29 200.3 -3.9 254 195-478 40-311 (312)
72 3oja_A Leucine-rich immune mol 99.9 1.5E-22 5E-27 197.6 7.1 212 199-424 35-247 (487)
73 3goz_A Leucine-rich repeat-con 99.9 2.6E-21 9E-26 182.0 15.0 252 226-478 2-299 (362)
74 4fcg_A Uncharacterized protein 99.9 3.5E-22 1.2E-26 184.9 7.7 231 98-350 79-309 (328)
75 1wwl_A Monocyte differentiatio 99.9 7.4E-24 2.5E-28 195.1 -4.1 206 220-453 93-310 (312)
76 3g06_A SSPH2 (leucine-rich rep 99.9 3.8E-21 1.3E-25 191.3 14.7 266 149-460 40-305 (622)
77 3oja_A Leucine-rich immune mol 99.9 9.2E-23 3.1E-27 199.0 2.9 243 214-471 22-270 (487)
78 3g06_A SSPH2 (leucine-rich rep 99.9 5.6E-21 1.9E-25 190.1 15.0 268 125-438 40-307 (622)
79 2z62_A TOLL-like receptor 4, v 99.8 1.4E-21 4.7E-26 176.8 5.9 204 247-476 29-237 (276)
80 2o6q_A Variable lymphocyte rec 99.8 3.8E-21 1.3E-25 173.1 6.1 201 247-451 17-217 (270)
81 2z62_A TOLL-like receptor 4, v 99.8 3.1E-20 1E-24 168.0 9.5 203 52-282 29-236 (276)
82 2o6q_A Variable lymphocyte rec 99.8 2.1E-20 7.2E-25 168.3 8.1 212 41-258 6-217 (270)
83 4glp_A Monocyte differentiatio 99.8 2.2E-20 7.4E-25 171.8 5.3 231 222-478 64-309 (310)
84 3rfs_A Internalin B, repeat mo 99.8 2.6E-20 8.8E-25 167.8 5.5 211 242-464 37-247 (272)
85 3rfs_A Internalin B, repeat mo 99.8 1.9E-20 6.5E-25 168.6 4.5 207 219-437 38-244 (272)
86 1h6u_A Internalin H; cell adhe 99.8 2.3E-19 7.9E-24 164.4 11.6 196 242-454 37-232 (308)
87 1h6u_A Internalin H; cell adhe 99.8 7.6E-19 2.6E-23 161.0 13.1 194 219-429 38-231 (308)
88 1p9a_G Platelet glycoprotein I 99.8 9.2E-20 3.1E-24 165.3 5.3 203 242-452 6-208 (290)
89 4glp_A Monocyte differentiatio 99.8 4.6E-19 1.6E-23 162.9 8.5 202 222-429 91-308 (310)
90 1p9a_G Platelet glycoprotein I 99.8 2E-19 6.8E-24 163.1 5.0 201 218-425 6-206 (290)
91 3m19_A Variable lymphocyte rec 99.8 4.2E-19 1.4E-23 157.8 5.2 178 271-452 15-192 (251)
92 2xwt_C Thyrotropin receptor; s 99.8 8.8E-20 3E-24 161.1 0.7 197 271-473 32-236 (239)
93 2xwt_C Thyrotropin receptor; s 99.7 3.8E-19 1.3E-23 157.0 1.2 196 199-424 32-236 (239)
94 3m19_A Variable lymphocyte rec 99.7 2.9E-18 1E-22 152.4 5.1 179 247-429 15-193 (251)
95 1h6t_A Internalin B; cell adhe 99.7 5.7E-17 1.9E-21 147.1 10.3 173 268-455 44-216 (291)
96 1h6t_A Internalin B; cell adhe 99.7 8.4E-17 2.9E-21 146.0 9.2 173 242-429 42-214 (291)
97 4ezg_A Putative uncharacterize 99.7 7.1E-17 2.4E-21 137.6 7.7 152 318-477 44-195 (197)
98 4ezg_A Putative uncharacterize 99.6 3.9E-16 1.3E-20 133.0 8.8 152 293-453 43-195 (197)
99 1m9s_A Internalin B; cell inva 99.6 4.2E-16 1.4E-20 154.9 9.4 187 267-468 40-226 (605)
100 1m9s_A Internalin B; cell inva 99.6 3.2E-16 1.1E-20 155.8 8.5 173 242-429 39-211 (605)
101 2o6s_A Variable lymphocyte rec 99.6 5.6E-17 1.9E-21 139.7 0.6 161 295-463 29-189 (208)
102 2o6s_A Variable lymphocyte rec 99.6 2.5E-16 8.4E-21 135.7 4.1 173 297-480 10-182 (208)
103 2xot_A Amphoterin-induced prot 99.6 3.5E-16 1.2E-20 146.7 4.5 155 320-475 41-201 (361)
104 2v9t_B SLIT homolog 2 protein 99.6 3.1E-16 1.1E-20 136.0 3.5 133 318-451 32-164 (220)
105 3un9_A NLR family member X1; l 99.6 1.1E-14 3.9E-19 136.1 14.0 185 293-478 71-285 (372)
106 2v70_A SLIT-2, SLIT homolog 2 99.6 6.3E-16 2.1E-20 134.0 4.1 152 297-452 14-166 (220)
107 3sb4_A Hypothetical leucine ri 99.6 3.1E-16 1.1E-20 145.2 2.2 285 173-469 24-327 (329)
108 3sb4_A Hypothetical leucine ri 99.6 3.1E-16 1.1E-20 145.2 1.8 289 197-497 24-329 (329)
109 3e6j_A Variable lymphocyte rec 99.6 1.2E-15 4.1E-20 133.2 4.4 153 295-452 20-172 (229)
110 3un9_A NLR family member X1; l 99.6 3.4E-14 1.2E-18 132.9 14.4 185 269-454 71-285 (372)
111 2xot_A Amphoterin-induced prot 99.6 1.6E-15 5.4E-20 142.3 5.2 173 249-424 21-199 (361)
112 4ay9_X Follicle-stimulating ho 99.6 1.9E-15 6.4E-20 141.2 5.7 239 54-303 12-255 (350)
113 2v9t_B SLIT homolog 2 protein 99.6 1.2E-15 4E-20 132.3 3.8 131 294-424 32-162 (220)
114 1xeu_A Internalin C; cellular 99.6 1.1E-15 3.6E-20 136.4 3.3 169 270-454 19-187 (263)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 2.3E-15 7.9E-20 130.4 4.7 149 273-424 14-163 (220)
116 3cvr_A Invasion plasmid antige 99.5 5.7E-15 2E-19 145.1 7.2 188 246-462 59-253 (571)
117 1xeu_A Internalin C; cellular 99.5 3.6E-15 1.2E-19 133.0 4.7 169 245-429 18-186 (263)
118 3cvr_A Invasion plasmid antige 99.5 2.7E-15 9.4E-20 147.4 4.1 189 222-439 59-254 (571)
119 4ay9_X Follicle-stimulating ho 99.5 1.4E-15 4.9E-20 142.0 1.9 225 50-280 29-256 (350)
120 3e6j_A Variable lymphocyte rec 99.5 6.9E-15 2.3E-19 128.4 5.0 130 294-424 40-169 (229)
121 2je0_A Acidic leucine-rich nuc 99.5 2E-14 7E-19 116.4 5.9 127 342-471 17-148 (149)
122 2ell_A Acidic leucine-rich nuc 99.5 1.4E-14 5E-19 119.9 4.4 132 342-476 24-160 (168)
123 2je0_A Acidic leucine-rich nuc 99.5 5E-14 1.7E-18 114.0 5.7 127 318-447 17-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.4 3.3E-14 1.1E-18 117.8 3.4 134 317-453 23-161 (168)
125 1dce_A Protein (RAB geranylger 99.4 1.3E-15 4.3E-20 150.6 -6.2 104 368-477 443-547 (567)
126 1dce_A Protein (RAB geranylger 99.4 1.4E-15 4.7E-20 150.4 -6.8 197 267-470 346-567 (567)
127 1a9n_A U2A', U2A'; complex (nu 99.4 1.6E-13 5.6E-18 114.4 4.7 135 340-479 17-156 (176)
128 4fdw_A Leucine rich hypothetic 99.4 1.4E-13 4.9E-18 129.9 4.9 240 223-474 136-381 (401)
129 4fdw_A Leucine rich hypothetic 99.4 4.3E-13 1.5E-17 126.7 6.7 128 318-450 248-381 (401)
130 1w8a_A SLIT protein; signaling 99.4 1.1E-13 3.6E-18 117.2 2.3 128 321-452 11-139 (192)
131 4fs7_A Uncharacterized protein 99.4 1.6E-13 5.6E-18 130.3 3.8 237 193-444 157-393 (394)
132 4fs7_A Uncharacterized protein 99.4 5.4E-13 1.9E-17 126.7 7.1 335 88-468 59-393 (394)
133 1ds9_A Outer arm dynein; leuci 99.4 1.1E-14 3.9E-19 124.0 -4.1 133 337-477 43-186 (198)
134 2o6r_A Variable lymphocyte rec 99.3 7.2E-13 2.5E-17 110.6 5.5 129 321-453 10-138 (177)
135 2wfh_A SLIT homolog 2 protein 99.3 7.5E-13 2.6E-17 111.9 4.2 126 321-451 13-138 (193)
136 1a9n_A U2A', U2A'; complex (nu 99.3 1.2E-12 4.2E-17 109.0 4.9 133 316-453 17-154 (176)
137 3e4g_A ATP synthase subunit S, 99.3 1.1E-11 3.6E-16 100.5 7.9 101 391-492 62-170 (176)
138 2o6r_A Variable lymphocyte rec 99.3 3.7E-12 1.3E-16 106.3 5.2 107 318-424 28-134 (177)
139 2wfh_A SLIT homolog 2 protein 99.2 2.5E-12 8.7E-17 108.6 3.9 124 297-424 13-136 (193)
140 1w8a_A SLIT protein; signaling 99.2 1.5E-11 5.3E-16 103.8 8.7 89 170-258 50-138 (192)
141 1ds9_A Outer arm dynein; leuci 99.2 2E-13 6.8E-18 116.3 -3.8 129 361-495 43-180 (198)
142 4b8c_D Glucose-repressible alc 99.2 8.6E-13 2.9E-17 134.6 -0.3 115 266-384 220-334 (727)
143 4b8c_D Glucose-repressible alc 99.2 2.5E-12 8.4E-17 131.2 1.6 163 50-220 172-338 (727)
144 2ra8_A Uncharacterized protein 99.1 5.2E-10 1.8E-14 103.6 12.5 178 291-474 136-341 (362)
145 3e4g_A ATP synthase subunit S, 99.1 3.5E-10 1.2E-14 91.7 8.3 90 52-141 62-155 (176)
146 3g39_A Variable lymphocyte rec 99.1 4.5E-11 1.5E-15 98.6 3.1 105 344-452 11-115 (170)
147 4gt6_A Cell surface protein; l 99.1 1.9E-10 6.6E-15 109.0 7.9 130 288-424 259-388 (394)
148 2ra8_A Uncharacterized protein 99.1 2.5E-09 8.6E-14 99.0 14.5 160 241-424 167-340 (362)
149 2r9u_A Variable lymphocyte rec 99.0 8.1E-11 2.8E-15 97.4 3.1 104 345-452 15-118 (174)
150 4gt6_A Cell surface protein; l 99.0 3.2E-10 1.1E-14 107.5 7.6 131 336-474 259-389 (394)
151 1io0_A Tropomodulin; LRR prote 99.0 2.7E-09 9.3E-14 89.1 12.0 123 336-479 30-167 (185)
152 3g39_A Variable lymphocyte rec 99.0 1.1E-10 3.9E-15 96.2 2.8 105 320-428 11-115 (170)
153 1io0_A Tropomodulin; LRR prote 99.0 1.2E-08 4.1E-13 85.2 13.5 117 308-424 26-161 (185)
154 2r9u_A Variable lymphocyte rec 98.9 2.2E-10 7.7E-15 94.7 2.8 104 321-428 15-118 (174)
155 2ifg_A High affinity nerve gro 98.7 6E-09 2.1E-13 97.0 4.8 102 347-452 13-116 (347)
156 4h09_A Hypothetical leucine ri 98.7 1.2E-08 3.9E-13 96.4 5.6 120 315-439 237-356 (379)
157 4h09_A Hypothetical leucine ri 98.7 2.1E-08 7.1E-13 94.6 7.3 145 241-390 212-356 (379)
158 2ifg_A High affinity nerve gro 98.6 1.4E-08 4.9E-13 94.5 4.1 104 322-429 12-117 (347)
159 1pgv_A TMD-1, tropomodulin TMD 98.2 1.4E-05 4.9E-10 66.0 12.0 116 335-450 34-168 (197)
160 1pgv_A TMD-1, tropomodulin TMD 98.2 2.5E-05 8.4E-10 64.5 12.7 109 364-473 39-167 (197)
161 3rw6_A Nuclear RNA export fact 98.1 1.2E-06 4.2E-11 76.7 3.7 81 387-469 167-257 (267)
162 3rw6_A Nuclear RNA export fact 98.1 1.7E-06 5.8E-11 75.7 3.1 83 411-495 167-257 (267)
163 3rfe_A Platelet glycoprotein I 94.2 0.026 8.8E-07 43.2 2.8 52 370-424 12-65 (130)
164 3rfe_A Platelet glycoprotein I 93.4 0.038 1.3E-06 42.3 2.4 55 394-452 12-68 (130)
165 1fs1_A SKP2 F-BOX, cyclin A/CD 83.4 1.5 5.1E-05 26.8 3.9 34 1-47 11-44 (53)
166 2lz0_A Uncharacterized protein 59.4 2.7 9.2E-05 30.0 0.8 46 402-449 8-53 (100)
167 2lz0_A Uncharacterized protein 58.1 2.4 8.2E-05 30.3 0.3 40 93-134 13-52 (100)
168 2e31_A FBS1, F-box only protei 33.5 30 0.001 30.3 3.3 35 1-47 53-87 (297)
169 3l2o_B F-box only protein 4; s 22.0 86 0.003 27.4 4.1 15 2-16 8-22 (312)
170 3v7d_B Cell division control p 21.1 70 0.0024 29.7 3.8 33 2-47 18-50 (464)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.9e-46 Score=384.66 Aligned_cols=421 Identities=21% Similarity=0.201 Sum_probs=192.4
Q ss_pred hcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCC
Q 010952 48 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 127 (497)
Q Consensus 48 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 127 (497)
..+++|++|+++++.+.+..+ +..+++|++|++++| .+....+. ++.+++|++|++++|. +....|..++++++|
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAISTCTEL 249 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSS-CCCSCCCB-CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSC
T ss_pred ccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCC-cCCCCCcc-cccCCCCCEEECcCCc-CCCcccHHHhcCCCC
Confidence 446666666666665543221 255666666666665 34332222 5566666666666665 344556666666666
Q ss_pred CEEeccCccccccccccccCCCCCCEEeccCCC------------------------CCCccccccccCCCCCCEEEeec
Q 010952 128 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCN------------------------CITDSDMKPLSGLTNLKSLQISC 183 (497)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~------------------------~~~~~~~~~l~~l~~L~~L~l~~ 183 (497)
++|++++|......+. . .+++|++|++++|. .+.+..+..+..+++|++|++++
T Consensus 250 ~~L~Ls~n~l~~~~~~-~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPP-L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp CEEECCSSCCEESCCC-C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CEEECCCCcccCccCc-c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 6666666532211111 1 34444444444432 12222333444444444444444
Q ss_pred cccCchhHH-hhhcCCCCcEEEccCCCCChHHHHHhhCCC-CCcEE--------------------------EcCCCCCC
Q 010952 184 SKVTDSGIA-YLKGLQKLTLLNLEGCPVTAACLDSLSALG-SLFYL--------------------------NLNRCQLS 235 (497)
Q Consensus 184 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L--------------------------~l~~~~~~ 235 (497)
|.+.+..+. .+.++++|++|++++|.+.+..+..+..++ +|+.| ++++|.+.
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 444422222 244444444444444443322222222222 23333 33333222
Q ss_pred hhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhc
Q 010952 236 DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLS 315 (497)
Q Consensus 236 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 315 (497)
+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+.
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 22233333444444444444433333333334444444444444444333333344444444444444444433334444
Q ss_pred CCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHh---------
Q 010952 316 GLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL--------- 386 (497)
Q Consensus 316 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--------- 386 (497)
.+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..|..+
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~ 567 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhh
Confidence 44444444444444444344444444445555554444443333444444555555554444332222111
Q ss_pred -------------------------------------------------------------hccCCCCeeeecCCCCChh
Q 010952 387 -------------------------------------------------------------RNFKNLRSLEICGGGLTDA 405 (497)
Q Consensus 387 -------------------------------------------------------------~~~~~L~~L~l~~~~l~~~ 405 (497)
..+++|+.|++++|.+++.
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ 647 (768)
T 3rgz_A 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647 (768)
T ss_dssp STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC
T ss_pred hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc
Confidence 1123444555555555544
Q ss_pred hHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCC
Q 010952 406 GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 476 (497)
Q Consensus 406 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 476 (497)
.+..++.+++|+.|+|++| .+++.+|..++++++|+.|++++|++++.++..+..+++|+.|++++|+++
T Consensus 648 ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 4445555555555555555 455445555555555555555555555555555555555555555555443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-45 Score=381.74 Aligned_cols=421 Identities=22% Similarity=0.202 Sum_probs=312.8
Q ss_pred cCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCC----------------
Q 010952 49 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA---------------- 112 (497)
Q Consensus 49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------- 112 (497)
.+++|++|+++++.+.+..+. ++++++|++|++++| .+.+..+..+..+++|++|++++|..
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 345555555555555433333 555555555555555 34444455555555555555555432
Q ss_pred -----CChHHHHHHhC-CCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeecccc
Q 010952 113 -----ITAQGMKAFAG-LINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKV 186 (497)
Q Consensus 113 -----~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 186 (497)
+...+|..+.. +++|++|++++|......+..++.+++|++|++++|..........+..+++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 11122333333 366666666665433344555667777777777765432222223355666666666666655
Q ss_pred CchhHH-------------------------hhhc--CCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHh
Q 010952 187 TDSGIA-------------------------YLKG--LQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC 239 (497)
Q Consensus 187 ~~~~~~-------------------------~l~~--l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 239 (497)
.+..+. .+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 433332 2222 5567788888887776677888999999999999999887788
Q ss_pred HhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCC
Q 010952 240 EKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 319 (497)
Q Consensus 240 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 319 (497)
..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 88999999999999999998777778889999999999999998777778889999999999999998877888999999
Q ss_pred CCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHH---------------------------------------
Q 010952 320 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA--------------------------------------- 360 (497)
Q Consensus 320 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--------------------------------------- 360 (497)
|++|++++|.+....+..+.++++|+.|++++|.++...+.
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 99999999999877888899999999999999876532221
Q ss_pred -------------------------------HhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHh
Q 010952 361 -------------------------------ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 409 (497)
Q Consensus 361 -------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 409 (497)
.+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 1223578999999999999988999999999999999999999988999
Q ss_pred hhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccC
Q 010952 410 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 473 (497)
Q Consensus 410 ~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 473 (497)
++.+++|+.|+|++| ++++.+|..+..+++|++|++++|++++.+|+. ..+.++....+.+|
T Consensus 676 l~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN 737 (768)
T 3rgz_A 676 VGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNN 737 (768)
T ss_dssp GGGCTTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSC
T ss_pred HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCC
Confidence 999999999999999 899889999999999999999999999876642 33444555555565
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-44 Score=366.12 Aligned_cols=421 Identities=21% Similarity=0.242 Sum_probs=232.3
Q ss_pred CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEE
Q 010952 51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 130 (497)
Q Consensus 51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 130 (497)
+++++|+++++.++...+..|+++++|++|++++| .+....+.+|.++++|++|++++|. +....|..++++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEe
Confidence 46788888888877655667788888888888887 5666667778888888888888886 455556677888888888
Q ss_pred eccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCc--EEEccCC
Q 010952 131 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLT--LLNLEGC 208 (497)
Q Consensus 131 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~ 208 (497)
++++|......+..++.+++|++|++++|. +.......+..+++|++|++++|.+....+..+..+++|+ .+++++|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 888765333335567778888888888754 3333334444477788888877777766666666666666 6666666
Q ss_pred CCChHHH-------------------------------------------------------------------------
Q 010952 209 PVTAACL------------------------------------------------------------------------- 215 (497)
Q Consensus 209 ~~~~~~~------------------------------------------------------------------------- 215 (497)
.+.+..+
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 5443222
Q ss_pred --HHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH-hHHHHHhC
Q 010952 216 --DSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD-EGLVNLTG 292 (497)
Q Consensus 216 --~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~ 292 (497)
..++.+++|++|++++|.+.. .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.. .....+..
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred CHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 113333444444444444432 22333444444444444444443333334444444444444443321 11122334
Q ss_pred CCCCCEeeccCcccchHH--HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH-HHhcCCCCCc
Q 010952 293 LCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALTSLTGLT 369 (497)
Q Consensus 293 ~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 369 (497)
+++|++|++++|.+.... +..+..+++|++|++++|.+....+..+.++++|+.|++++|.+....+ ..+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 444445554444443322 2234444555555555554443333444445555555555554433221 1234455555
Q ss_pred EEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhH---HhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEe
Q 010952 370 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV---KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 446 (497)
Q Consensus 370 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l 446 (497)
.|++++|.+....+..+..+++|++|++++|.+.+... ..+..+++|++|++++| .+++..+..+..+++|+.|++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEEC
Confidence 55555555544444444555555555555555543211 23444555555555555 455544455555555555555
Q ss_pred eCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952 447 SNSRITSAGLRHLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 447 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 477 (497)
++|++++..++.+..+++| .|++++|.++.
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 5555555555555555555 55555555543
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-43 Score=357.58 Aligned_cols=424 Identities=21% Similarity=0.193 Sum_probs=345.3
Q ss_pred hcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCC
Q 010952 48 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 127 (497)
Q Consensus 48 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 127 (497)
..+++|++|+++++.+....+..|+++++|++|++++| .+....+..|+.+++|++|++++|. +....+..++++++|
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTL 131 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTC
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeeccccC-cccCCcchhccCCcc
Confidence 45788999999998887766778888999999999887 6666667788888999999999887 454445667888889
Q ss_pred CEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCC--EEEeecc---------------------
Q 010952 128 VKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK--SLQISCS--------------------- 184 (497)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L~l~~~--------------------- 184 (497)
++|++++|.......+.+..+++|++|++++|. +....+..+..+++|+ .|+++++
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 210 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence 999988865333233444557888888887743 3333344455555555 4444443
Q ss_pred ------------------------------------------------------ccCchhHHhhhcCCCCcEEEccCCCC
Q 010952 185 ------------------------------------------------------KVTDSGIAYLKGLQKLTLLNLEGCPV 210 (497)
Q Consensus 185 ------------------------------------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~ 210 (497)
.+....+..+.++++|++|++++|.+
T Consensus 211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 290 (606)
T 3t6q_A 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290 (606)
T ss_dssp TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence 33333344467789999999999988
Q ss_pred ChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhH-HHHhhCCCCcCEEeCCCCCCCHhH--H
Q 010952 211 TAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC-LVHLKGLTNLESLNLDSCGIGDEG--L 287 (497)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~--~ 287 (497)
.. +|..+..+++|++|++++|.+....+..++.+++|+.|++++|.+.... ...+..+++|+.|++++|.+.... +
T Consensus 291 ~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 291 SE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp SC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred CC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 75 5667889999999999999999887888999999999999999876332 334778999999999999887655 5
Q ss_pred HHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCC
Q 010952 288 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLT 366 (497)
Q Consensus 288 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 366 (497)
..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.++...+..+..++
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 449 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence 567889999999999999887777788899999999999998765433 3477899999999999999887777788899
Q ss_pred CCcEEEecCCCcChHH---HHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcE
Q 010952 367 GLTHLDLFGARITDSG---AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVS 443 (497)
Q Consensus 367 ~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~ 443 (497)
+|+.|++++|.+.+.. +..+..+++|+.|++++|.+++..+..+..+++|++|++++| .++...+..+.+++.| .
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~ 527 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-Y 527 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-E
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-E
Confidence 9999999999987632 245788999999999999999988888999999999999999 8999899999999999 9
Q ss_pred EEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952 444 LNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 444 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 477 (497)
|++++|++++..+..+..+++|+.|++++|+++.
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred EECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 9999999998888888899999999999998864
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-41 Score=347.10 Aligned_cols=130 Identities=23% Similarity=0.317 Sum_probs=70.8
Q ss_pred cCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHH--------hhhhcCCCCeecccCCCCCChhHHHH
Q 010952 363 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVK--------HIKDLSSLTLLNLSQNCNLTDKTLEL 434 (497)
Q Consensus 363 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~--------~~~~l~~L~~L~l~~~~~l~~~~~~~ 434 (497)
..+++|+.|++++|.++...+..+..+++|+.|++++|.++..... .+..+++|++|++++| .++...+..
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~ 555 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV 555 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence 3445555555555555544444445555555555555555443211 1344556666666666 555433344
Q ss_pred hhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccC
Q 010952 435 ISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 494 (497)
Q Consensus 435 l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l 494 (497)
+.++++|+.|++++|.++......+..+++|+.|++++|.++......+. ..+++|+.+
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~l 614 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-PAFRNLTEL 614 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH-HHHTTCSEE
T ss_pred cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc-ccccccCEE
Confidence 56666666666666666655555556666677777777766655444332 234455544
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.3e-42 Score=345.36 Aligned_cols=432 Identities=22% Similarity=0.218 Sum_probs=297.7
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
.+++++|+++++.+++..+..++++++|++|++++| .+....+.+|.++++|++|++++|. +....|..|+++++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCE
Confidence 368999999999888766667889999999999988 6777667788899999999999987 55566788899999999
Q ss_pred EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCC----cEEEc
Q 010952 130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLNL 205 (497)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l 205 (497)
|++++|......+..++.+++|++|++++|.......+..+.++++|++|++++|.++...+..+..+++| .++++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 99998754444446688899999999998654433456778899999999999888876554444333222 24555
Q ss_pred cCCCCCh------------------------HHHHHhhCCCCCcEE----------------------------------
Q 010952 206 EGCPVTA------------------------ACLDSLSALGSLFYL---------------------------------- 227 (497)
Q Consensus 206 ~~~~~~~------------------------~~~~~l~~l~~L~~L---------------------------------- 227 (497)
++|.+.. ..+..+.++++|+.+
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 5444432 222333333333322
Q ss_pred ----------------------EcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHh
Q 010952 228 ----------------------NLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDE 285 (497)
Q Consensus 228 ----------------------~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 285 (497)
+++++.+.... .+..+++|+.|++++|.+.. .+ .+ .+++|+.|++++|.....
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~-lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQ-FP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSS-CC-CC-CCSSCCEEEEESCSSCEE
T ss_pred cccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCcc-cc-cC-CCCccceeeccCCcCccc
Confidence 22222221111 22333344444444444421 11 12 445555555554422211
Q ss_pred HHHHHhCCCCCCEeeccCcccchHH--HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH-HHh
Q 010952 286 GLVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AAL 362 (497)
Q Consensus 286 ~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~ 362 (497)
. .+..+++|++|++++|.+.... +..+..+++|++|++++|.+... +..+..+++|+.|++++|.+....+ ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhh
Confidence 1 3345667777777777665432 45566777888888887765542 2456677888888888887766544 466
Q ss_pred cCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChh-hHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCC
Q 010952 363 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA-GVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 441 (497)
Q Consensus 363 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L 441 (497)
..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++| .+++..+..+.++++|
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccC
Confidence 7788899999999888877777788889999999999988773 4667788899999999999 8888777888889999
Q ss_pred cEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCC-CCccCC
Q 010952 442 VSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLP-NLVSFR 495 (497)
Q Consensus 442 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p-~L~~l~ 495 (497)
+.|++++|++++..+..+..+++|+.|++++|.++..... + ..+| +|+.++
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~--~~l~~~L~~l~ 551 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-L--QHFPKSLAFFN 551 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-G--GGSCTTCCEEE
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-H--hhhcccCcEEE
Confidence 9999999999888788888899999999999988743322 3 2455 466654
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-41 Score=348.49 Aligned_cols=191 Identities=19% Similarity=0.275 Sum_probs=107.7
Q ss_pred ccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcC
Q 010952 301 LSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT 379 (497)
Q Consensus 301 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 379 (497)
+++|.+....+..+..+++|+.|++++|.+....+ ..+.++++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus 388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence 33333333333445566677777777766543222 34556666666666666655544455556666666666666543
Q ss_pred --hHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHH--------HHhhcCCCCcEEEeeCC
Q 010952 380 --DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL--------ELISGLTGLVSLNVSNS 449 (497)
Q Consensus 380 --~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--------~~l~~~~~L~~L~l~~~ 449 (497)
+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++| .++.... ..+.++++|+.|++++|
T Consensus 468 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp CTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred ccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 223444556666666666666666655555566666666666666 4544321 12455666666666666
Q ss_pred ccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccC
Q 010952 450 RITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSF 494 (497)
Q Consensus 450 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l 494 (497)
.++......+..+++|+.|++++|.++......+. .+++|+.|
T Consensus 547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~l~~L~~L 589 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN--NQVSLKSL 589 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEE
T ss_pred CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC--CCCCCCEE
Confidence 66654444566666666666666666543322222 44555544
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-42 Score=345.05 Aligned_cols=419 Identities=23% Similarity=0.250 Sum_probs=294.8
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
.+++++|+++++.++...+..+..+++|++|++++| .+....+.+|.++++|++|++++|. +....+..|+++++|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccc
Confidence 357999999999988766778899999999999998 6777667788999999999999997 55666678999999999
Q ss_pred EeccCcccccccc-ccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCC----cEEE
Q 010952 130 LDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL----TLLN 204 (497)
Q Consensus 130 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~ 204 (497)
|++++|. +...+ ..++.+++|++|++++|.......+..+.++++|++|+++++.+....+..+..+++| +.++
T Consensus 105 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 105 LVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 9999875 44333 3688999999999998654332456788899999999999999887666666666666 7888
Q ss_pred ccCCCCChHHHHHhhCCCCCcEEEcCCCCC--------------------------------------------------
Q 010952 205 LEGCPVTAACLDSLSALGSLFYLNLNRCQL-------------------------------------------------- 234 (497)
Q Consensus 205 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------------------------------------------------- 234 (497)
+++|.+....+..+... +|+.|+++++..
T Consensus 184 l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp CTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred cCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 88887665444333332 455554444311
Q ss_pred --------ChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhC--------------------CCCcCEEeCCCCCCCHhH
Q 010952 235 --------SDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG--------------------LTNLESLNLDSCGIGDEG 286 (497)
Q Consensus 235 --------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~--------------------~~~L~~L~l~~~~l~~~~ 286 (497)
....+..++.+++|+.|+++++.+.. .+..+.. +++|+.+++.++.+....
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccc
Confidence 11112233445556666665554442 2222223 344444444444332211
Q ss_pred HHHHhCCCCCCEeeccCcccchHH--HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH-HHhc
Q 010952 287 LVNLTGLCNLKCLELSDTQVGSSG--LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL-AALT 363 (497)
Q Consensus 287 ~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~ 363 (497)
+. ..+++|++|++++|.+.... +..+..+++|++|++++|.+...... +..+++|+.|++++|.+....+ ..+.
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 11 35667777777777665432 34556777788888877766543333 6677888888888877665433 3456
Q ss_pred CCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCC-hhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCc
Q 010952 364 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 442 (497)
Q Consensus 364 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 442 (497)
.+++|+.|++++|.+....+..+..+++|+.|++++|.+. +..+..+..+++|++|++++| .+++..+..+..+++|+
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCC
Confidence 7788888888888877766667777888888888888876 344566777888888888888 77777777788888888
Q ss_pred EEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952 443 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 443 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 477 (497)
.|++++|.+++..+..+..+++|+.|++++|+++.
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 88888888887776777888888888888887654
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-39 Score=325.03 Aligned_cols=416 Identities=20% Similarity=0.193 Sum_probs=302.6
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
.+++++|+++++.+++..+..++++++|++|++++| .+....+.+|..+++|++|++++|. +....+..++++++|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence 368999999999998766778999999999999998 6777777889999999999999998 56667778999999999
Q ss_pred EeccCccccc-cccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCC
Q 010952 130 LDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 208 (497)
Q Consensus 130 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 208 (497)
|++++|.... ..+..++.+++|++|++++|..........+..+++|++|+++++.+....+..+..+++|++|+++++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9999975333 345678999999999999977566555578889999999999999999888888999999999999999
Q ss_pred CCChHHHHHhhCCCCCcEEEcCCCCCChhH---hHhhhcCCCCCEEEccCCCCChhHHHHh----hC-------------
Q 010952 209 PVTAACLDSLSALGSLFYLNLNRCQLSDDG---CEKFSKIGSLKVLNLGFNEITDECLVHL----KG------------- 268 (497)
Q Consensus 209 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~------------- 268 (497)
.+.......+..+++|++|++++|.+.+.. ......+++|+.|+++++.+.+..+..+ ..
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 876644444567899999999998876531 1111234555666655555443222211 11
Q ss_pred ----------------------------------------------CCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeecc
Q 010952 269 ----------------------------------------------LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 302 (497)
Q Consensus 269 ----------------------------------------------~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 302 (497)
.++|+.+++++|.+...+...+..+++|++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 2345555555555443333333456777777777
Q ss_pred CcccchHHHH---hhcCCCCCCEEeccCCCCChHHH--HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCC
Q 010952 303 DTQVGSSGLR---HLSGLTNLESINLSFTGISDGSL--RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377 (497)
Q Consensus 303 ~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 377 (497)
+|.+....+. .++.+++|++|++++|.+..... ..+..+++|+.|++++|.++.. +..+..+++|+.|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCC
Confidence 7776654432 24566777777777777665432 4466677777777777766642 3344556777777777777
Q ss_pred cChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHH
Q 010952 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 457 (497)
Q Consensus 378 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~ 457 (497)
+.... .. ..++|+.|++++|.+++.. ..+++|++|++++| +++. +|. ...+++|+.|++++|++++..+.
T Consensus 422 l~~l~-~~--~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N-~l~~-ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 422 IRVVK-TC--IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRN-KLKT-LPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp CSCCC-TT--SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSS-CCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred ccccc-ch--hcCCceEEECCCCChhhhc----ccCChhcEEECCCC-ccCc-CCC-cccCccCCEEecCCCccCCcCHH
Confidence 65421 11 1357777888877777642 46789999999999 7774 333 45789999999999999988777
Q ss_pred hhcCCcccceeecccCCCCHH
Q 010952 458 HLKPLKNLRSLTLESCKVTAN 478 (497)
Q Consensus 458 ~l~~~~~L~~L~l~~~~~~~~ 478 (497)
.+..+++|+.|++++|+++..
T Consensus 492 ~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp GGGGCTTCCEEECCSSCBCCC
T ss_pred HHhcCcccCEEEecCCCccCC
Confidence 888999999999999987653
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-41 Score=343.21 Aligned_cols=417 Identities=20% Similarity=0.184 Sum_probs=332.7
Q ss_pred hcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCC
Q 010952 48 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 127 (497)
Q Consensus 48 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 127 (497)
..+++|++|+++++.+++..+..|+++++|++|++++| .+....+..|+++++|++|++++|.. ....+..++++++|
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITL 130 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCC-CCSSSSCCTTCTTC
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCcc-ccccccccCCCCCC
Confidence 45789999999999888766777899999999999988 57776678889999999999999873 44444568889999
Q ss_pred CEEeccCccccc-cccccccCCCCCCEEeccCCCCCCcccccccc---------------------------CCCCCCEE
Q 010952 128 VKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS---------------------------GLTNLKSL 179 (497)
Q Consensus 128 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~---------------------------~l~~L~~L 179 (497)
++|++++|.... ..+..++++++|++|++++|. +....+..+. ...+|+.|
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 999999875433 346778889999999998854 3222222221 12256677
Q ss_pred EeeccccCc-hhHH--------------------------------------------------------hhhcCCCCcE
Q 010952 180 QISCSKVTD-SGIA--------------------------------------------------------YLKGLQKLTL 202 (497)
Q Consensus 180 ~l~~~~~~~-~~~~--------------------------------------------------------~l~~l~~L~~ 202 (497)
+++++.+.. ..+. .+..+++|+.
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 289 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence 776665431 1111 1445577788
Q ss_pred EEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCC
Q 010952 203 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 282 (497)
Q Consensus 203 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 282 (497)
++++++.+... + .+..+++|+.|++++|.+.. .+ .+ .+++|+.|++++|...... .+..+++|+.|++++|.+
T Consensus 290 L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l~~-lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 290 MSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQLKQ-FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp EEEESCCCCCC-C-CCCTTCCCSEEEEESCCCSS-CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred EEecCccchhh-h-hccccccCCEEEcccccCcc-cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence 88888877552 3 67788999999999999843 44 44 8999999999999554322 466889999999999987
Q ss_pred CHhH--HHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhHH
Q 010952 283 GDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGL 359 (497)
Q Consensus 283 ~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~ 359 (497)
.... +..+..+++|++|++++|.+.... ..+..+++|++|++++|.+....+ ..+.++++|+.|++++|.++...+
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 6543 566788999999999999876643 667889999999999998776554 567889999999999999987767
Q ss_pred HHhcCCCCCcEEEecCCCcChH-HHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC
Q 010952 360 AALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 438 (497)
Q Consensus 360 ~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~ 438 (497)
..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+++..+..+..+++|++|++++| .+++..+..+..+
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 520 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQL 520 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTC
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCC
Confidence 7788999999999999998873 5667889999999999999999988888999999999999999 8998888999999
Q ss_pred CCCcEEEeeCCccChhHHHhhcCCc-ccceeecccCCCCH
Q 010952 439 TGLVSLNVSNSRITSAGLRHLKPLK-NLRSLTLESCKVTA 477 (497)
Q Consensus 439 ~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~~~ 477 (497)
++|+.|++++|+++.. +..+..++ +|+.|++++|++..
T Consensus 521 ~~L~~L~l~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 521 YSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTCCEEECTTSCCCCE-ESCGGGSCTTCCEEECCSCCCCC
T ss_pred CcCCEEECCCCcCccc-CHhHhhhcccCcEEEccCCCccc
Confidence 9999999999999854 44577887 59999999998864
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6e-41 Score=350.22 Aligned_cols=163 Identities=20% Similarity=0.155 Sum_probs=126.1
Q ss_pred cCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCC
Q 010952 49 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 128 (497)
Q Consensus 49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 128 (497)
..+++++|+|+++.++...+..++++++|++|++++|.......+.+|.++++|++|++++|. +....|..|+++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccC
Confidence 357899999999999877777899999999999999854444457789999999999999998 5666688899999999
Q ss_pred EEeccCccccccccc--cccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcC--CCCcEEE
Q 010952 129 KLDLERCTRIHGGLV--NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGL--QKLTLLN 204 (497)
Q Consensus 129 ~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~ 204 (497)
+|++++|......+. .+..+++|++|++++|..........+.++++|++|++++|.+....+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 999999754333333 388999999999999765443334678899999999999998876555555443 4555555
Q ss_pred ccCCCCCh
Q 010952 205 LEGCPVTA 212 (497)
Q Consensus 205 l~~~~~~~ 212 (497)
+++|.+..
T Consensus 181 L~~n~l~~ 188 (844)
T 3j0a_A 181 LAANSLYS 188 (844)
T ss_dssp ECCSBSCC
T ss_pred CCCCcccc
Confidence 55554433
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-41 Score=340.77 Aligned_cols=435 Identities=19% Similarity=0.188 Sum_probs=339.3
Q ss_pred hhcCCCCCchhH---HHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCcccc-----Ch------------
Q 010952 31 CALQYPGVNDKW---MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQI-----SD------------ 90 (497)
Q Consensus 31 ~~~~~~~~~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~------------ 90 (497)
+.|....-++.| .++.|....+++.|+|+++++.+..+..++++++|++|++++|... .+
T Consensus 58 ~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~ 137 (636)
T 4eco_A 58 ANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137 (636)
T ss_dssp CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH
T ss_pred CCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH
Confidence 345555566778 7777755579999999999999889999999999999999998320 00
Q ss_pred ---------------hHHHHhh-------------------CCCCCCEEEcC--CCCCCChHHHHHHhCCCCCCEEeccC
Q 010952 91 ---------------GGLEHLR-------------------GLSNLTSLSFR--RNNAITAQGMKAFAGLINLVKLDLER 134 (497)
Q Consensus 91 ---------------~~~~~~~-------------------~~~~L~~L~l~--~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (497)
..+..+. ....++.+.+. .|. ++. +|..++++++|++|++++
T Consensus 138 ~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~-l~~-ip~~l~~l~~L~~L~Ls~ 215 (636)
T 4eco_A 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITF-VSKAVMRLTKLRQFYMGN 215 (636)
T ss_dssp HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEES
T ss_pred HHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCC-Ccc-CCHHHhcccCCCEEECcC
Confidence 0000000 01122222222 233 344 688899999999999999
Q ss_pred cccccc------------------cccccc--CCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccc-cCc-hhHH
Q 010952 135 CTRIHG------------------GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIA 192 (497)
Q Consensus 135 ~~~~~~------------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~ 192 (497)
|. +.+ .+..++ ++++|++|++++|.. ....+..+..+++|++|++++|. +++ ..+.
T Consensus 216 n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 216 SP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp CC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred Cc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-CccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence 76 555 778888 999999999999654 44567889999999999999998 887 7777
Q ss_pred hhhcC------CCCcEEEccCCCCChHHHH--HhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHH
Q 010952 193 YLKGL------QKLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLV 264 (497)
Q Consensus 193 ~l~~l------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 264 (497)
.+..+ ++|++|++++|.+. .+|. .++.+++|++|++++|.+.+..+ .++.+++|+.|++++|.+. ..+.
T Consensus 294 ~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~ 370 (636)
T 4eco_A 294 DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPA 370 (636)
T ss_dssp HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCT
T ss_pred HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccH
Confidence 77766 99999999999998 4666 89999999999999999885566 7888999999999999887 4455
Q ss_pred HhhCCCC-cCEEeCCCCCCCHhHHHHHhC--CCCCCEeeccCcccchHHHHhhc-------CCCCCCEEeccCCCCChHH
Q 010952 265 HLKGLTN-LESLNLDSCGIGDEGLVNLTG--LCNLKCLELSDTQVGSSGLRHLS-------GLTNLESINLSFTGISDGS 334 (497)
Q Consensus 265 ~l~~~~~-L~~L~l~~~~l~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~ 334 (497)
.+..+++ |+.|++++|.+.. .+..+.. +++|++|++++|.+....+..+. .+++|++|++++|.+....
T Consensus 371 ~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp 449 (636)
T 4eco_A 371 NFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449 (636)
T ss_dssp TSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC
T ss_pred hhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCC
Confidence 5778888 9999999998873 3444443 34899999999998876666666 6779999999999988655
Q ss_pred HHHhcCCCCCcEEEcCCCCCCHhHHHHhcCC-------CCCcEEEecCCCcChHHHHHhh--ccCCCCeeeecCCCCChh
Q 010952 335 LRKLAGLSSLKSLNLDARQITDTGLAALTSL-------TGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDA 405 (497)
Q Consensus 335 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~~ 405 (497)
...+..+++|+.|++++|.++......+... ++|+.|++++|.++.. |..+. .+++|+.|++++|.+.+
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCC-
Confidence 5666779999999999999885433333322 3899999999999854 55554 89999999999999998
Q ss_pred hHHhhhhcCCCCeecccC------CCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHH
Q 010952 406 GVKHIKDLSSLTLLNLSQ------NCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 479 (497)
Q Consensus 406 ~~~~~~~l~~L~~L~l~~------~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 479 (497)
.+..+..+++|++|++++ | .+....|..+..+++|+.|++++|.++. ++..+. ++|+.|++++|++....
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGN-RTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCC-BCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cChhhhcCCCCCEEECCCCcccccC-cccccChHHHhcCCCCCEEECCCCcCCc-cCHhHh--CcCCEEECcCCCCcccc
Confidence 467788899999999954 5 5676778889999999999999999954 444443 79999999999887643
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.6e-41 Score=342.39 Aligned_cols=435 Identities=17% Similarity=0.174 Sum_probs=323.5
Q ss_pred hhcCCCCCchhH---HHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChh----------------
Q 010952 31 CALQYPGVNDKW---MDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDG---------------- 91 (497)
Q Consensus 31 ~~~~~~~~~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------------- 91 (497)
|.|......+.| .++.|..-.+++.|+|+++++.+..+..++++++|++|+++.++.+.+.
T Consensus 300 C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~ 379 (876)
T 4ecn_A 300 LNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379 (876)
T ss_dssp CSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHH
T ss_pred cccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhH
Confidence 444444444445 5555544478999999999999899999999999999999433333221
Q ss_pred ------------------------HHHHhh-----------CCCCCCEEEcCC--CCCCChHHHHHHhCCCCCCEEeccC
Q 010952 92 ------------------------GLEHLR-----------GLSNLTSLSFRR--NNAITAQGMKAFAGLINLVKLDLER 134 (497)
Q Consensus 92 ------------------------~~~~~~-----------~~~~L~~L~l~~--~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (497)
....+. ....++.+.+.. |. +.. +|..++++++|++|++++
T Consensus 380 l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~-L~~-IP~~l~~L~~L~~L~Ls~ 457 (876)
T 4ecn_A 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR-ITF-ISKAIQRLTKLQIIYFAN 457 (876)
T ss_dssp HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE-EEE-ECGGGGGCTTCCEEEEES
T ss_pred HHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCc-ccc-hhHHHhcCCCCCEEECcC
Confidence 001111 111222222222 32 233 677899999999999999
Q ss_pred cccccc------------------cccccc--CCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccc-cCc-hhHH
Q 010952 135 CTRIHG------------------GLVNLK--GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTD-SGIA 192 (497)
Q Consensus 135 ~~~~~~------------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~ 192 (497)
|. +.+ .|..++ ++++|++|++++|.. ....+..+..+++|+.|++++|. ++. ..|.
T Consensus 458 N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 458 SP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp CC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred Cc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence 75 444 677776 999999999998654 34566888999999999999998 887 6676
Q ss_pred hhhcCC-------CCcEEEccCCCCChHHHH--HhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHH
Q 010952 193 YLKGLQ-------KLTLLNLEGCPVTAACLD--SLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL 263 (497)
Q Consensus 193 ~l~~l~-------~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 263 (497)
.+..++ +|+.|++++|.+. .+|. .++.+++|+.|++++|.+. ..+ .++.+++|+.|++++|.+. ..+
T Consensus 536 ~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp 611 (876)
T 4ecn_A 536 DWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIP 611 (876)
T ss_dssp HHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCC
T ss_pred HHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cch
Confidence 665554 9999999999988 4666 8899999999999999988 444 7888999999999999888 455
Q ss_pred HHhhCCCC-cCEEeCCCCCCCHhHHHHHhCC--CCCCEeeccCcccchHHHH---hhc--CCCCCCEEeccCCCCChHHH
Q 010952 264 VHLKGLTN-LESLNLDSCGIGDEGLVNLTGL--CNLKCLELSDTQVGSSGLR---HLS--GLTNLESINLSFTGISDGSL 335 (497)
Q Consensus 264 ~~l~~~~~-L~~L~l~~~~l~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~~~~~~~~~ 335 (497)
..+..+++ |+.|++++|.+.. .+..+... ++|+.|++++|.+....+. .+. ..++|+.|++++|.+.....
T Consensus 612 ~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~ 690 (876)
T 4ecn_A 612 EDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690 (876)
T ss_dssp TTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH
T ss_pred HHHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH
Confidence 55777888 9999999998873 33444433 3499999999988654322 112 34589999999998886555
Q ss_pred HHhcCCCCCcEEEcCCCCCCHhHHHHhc-------CCCCCcEEEecCCCcChHHHHHhh--ccCCCCeeeecCCCCChhh
Q 010952 336 RKLAGLSSLKSLNLDARQITDTGLAALT-------SLTGLTHLDLFGARITDSGAAYLR--NFKNLRSLEICGGGLTDAG 406 (497)
Q Consensus 336 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~~~ 406 (497)
..+..+++|+.|++++|.++......+. ++++|+.|++++|.++.. |..+. .+++|+.|++++|.+.+.
T Consensus 691 ~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~l- 768 (876)
T 4ecn_A 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSSF- 768 (876)
T ss_dssp HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSSC-
T ss_pred HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCcc-
Confidence 5556889999999999988854333322 223899999999998843 55555 889999999999999884
Q ss_pred HHhhhhcCCCCeecccCCC-----CCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHH
Q 010952 407 VKHIKDLSSLTLLNLSQNC-----NLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 479 (497)
Q Consensus 407 ~~~~~~l~~L~~L~l~~~~-----~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 479 (497)
+..+..+++|+.|+|++|+ .+....|..+..+++|+.|++++|++. .++..+. ++|+.|++++|++....
T Consensus 769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccC
Confidence 6677789999999997731 566677888999999999999999984 4444443 69999999999886643
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=332.36 Aligned_cols=395 Identities=21% Similarity=0.195 Sum_probs=300.8
Q ss_pred hcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCC
Q 010952 48 SQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINL 127 (497)
Q Consensus 48 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 127 (497)
..+++|++|+++++.+++..+..++++++|++|++++| .+....+..|.++++|++|++++|.. ....+..++++++|
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L 126 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTL 126 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCC-CCSTTCSCTTCTTC
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccccccccc-ccCCCccccccccc
Confidence 45789999999999888766677899999999999998 57766677899999999999999873 43333358899999
Q ss_pred CEEeccCccccc-cccccccCCCCCCEEeccCCCCCCccccccccCCCCC----CEEEeeccccCchhH-----------
Q 010952 128 VKLDLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL----KSLQISCSKVTDSGI----------- 191 (497)
Q Consensus 128 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~----------- 191 (497)
++|++++|.... ..+..++++++|++|++++|. +....+..+..+++| +.++++++.+....+
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 999999875333 246778899999999999854 333334444444444 455555554433222
Q ss_pred ----------------------------------------------------------------------HhhhcCCCCc
Q 010952 192 ----------------------------------------------------------------------AYLKGLQKLT 201 (497)
Q Consensus 192 ----------------------------------------------------------------------~~l~~l~~L~ 201 (497)
..+..+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 2233445566
Q ss_pred EEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCC
Q 010952 202 LLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCG 281 (497)
Q Consensus 202 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 281 (497)
.|+++++.+.. .+..+..+ +|++|++++|.+..... ..+++|+.|+++++......+. ..+++|+.|++++|.
T Consensus 286 ~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 286 SFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG 358 (570)
T ss_dssp EEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred EEEecCccchh-hhhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence 66666665543 33344445 66666666666553221 3567788888877766543222 578999999999998
Q ss_pred CCHhH--HHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhH
Q 010952 282 IGDEG--LVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTG 358 (497)
Q Consensus 282 l~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~ 358 (497)
+.... +..+..+++|++|++++|.+...... +..+++|++|++++|.+....+ ..+.++++|+.|++++|.+....
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 87543 56678899999999999987765444 7889999999999997765433 45678999999999999988766
Q ss_pred HHHhcCCCCCcEEEecCCCcC-hHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhc
Q 010952 359 LAALTSLTGLTHLDLFGARIT-DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 437 (497)
Q Consensus 359 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~ 437 (497)
+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..+..+..+++|++|++++| .+++..+..+..
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 516 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDR 516 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhc
Confidence 677888999999999999987 345667788999999999999999988888999999999999999 888877778899
Q ss_pred CCCCcEEEeeCCccChh
Q 010952 438 LTGLVSLNVSNSRITSA 454 (497)
Q Consensus 438 ~~~L~~L~l~~~~l~~~ 454 (497)
+++|+.|++++|+++..
T Consensus 517 l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 517 LTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CTTCCEEECCSSCBCCC
T ss_pred ccCCcEEEecCCcccCC
Confidence 99999999999998753
No 15
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.5e-35 Score=299.40 Aligned_cols=469 Identities=20% Similarity=0.220 Sum_probs=344.4
Q ss_pred CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEE
Q 010952 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSL 80 (497)
Q Consensus 1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L 80 (497)
.||+|++.+||+++.. .... ..+. .++..|..... ...+.+++.+.... .....+.++++|++|
T Consensus 8 ~LPdevL~~If~~L~~-----~~d~---~~~s----~vck~W~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L 71 (594)
T 2p1m_B 8 SFPEEVLEHVFSFIQL-----DKDR---NSVS----LVCKSWYEIER---WCRRKVFIGNCYAV-SPATVIRRFPKVRSV 71 (594)
T ss_dssp --CHHHHHHHHHTCCC-----HHHH---HHHH----TSCHHHHHHHH---HHCCEEEESSTTSS-CHHHHHHHCTTCCEE
T ss_pred hCCHHHHHHHHhhcCC-----chhH---HHHH----HHHHHHHHhhh---hhceEEeecccccc-CHHHHHhhCCCceEE
Confidence 3899999999999831 2111 2233 68889987733 24567777664332 233457889999999
Q ss_pred EccCccccChh--------------HHHHhhCCCCCCEEEcCCCCCCChHHHHHHh-CCCCCCEEeccCcccccc--ccc
Q 010952 81 DFNFCIQISDG--------------GLEHLRGLSNLTSLSFRRNNAITAQGMKAFA-GLINLVKLDLERCTRIHG--GLV 143 (497)
Q Consensus 81 ~l~~~~~~~~~--------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~--~~~ 143 (497)
++++|..+.+. ......++++|++|++++|. +++..+..+. .+++|++|++++|..+.. ...
T Consensus 72 ~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 150 (594)
T 2p1m_B 72 ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA 150 (594)
T ss_dssp EEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH
T ss_pred eccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH
Confidence 99998644322 12234578999999999997 6777777776 799999999999865544 233
Q ss_pred cccCCCCCCEEeccCCCCCCccccccc----cCCCCCCEEEeeccc--cCchhHHh-hhcCCCCcEEEccCCCCChHHHH
Q 010952 144 NLKGLMKLESLNIKWCNCITDSDMKPL----SGLTNLKSLQISCSK--VTDSGIAY-LKGLQKLTLLNLEGCPVTAACLD 216 (497)
Q Consensus 144 ~~~~l~~L~~L~l~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~--~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~ 216 (497)
....+++|++|++++|. +.+.....+ ..+++|+.|+++++. +....... ...+++|++|++++|......+.
T Consensus 151 ~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~ 229 (594)
T 2p1m_B 151 IAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT 229 (594)
T ss_dssp HHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH
T ss_pred HHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH
Confidence 44579999999999976 444333333 367899999999875 55444433 36689999999999954444778
Q ss_pred HhhCCCCCcEEEcCCCCC--C----hhHhHhhhcCCCCCEE-EccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952 217 SLSALGSLFYLNLNRCQL--S----DDGCEKFSKIGSLKVL-NLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 289 (497)
Q Consensus 217 ~l~~l~~L~~L~l~~~~~--~----~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 289 (497)
.+..+++|+.|+++.+.. . ...+..+..+++|+.+ .+..... ...+..+..+++|+.|++++|.+.+.....
T Consensus 230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~ 308 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVK 308 (594)
T ss_dssp HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHH
T ss_pred HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHH
Confidence 888999999999877642 1 1233467889999999 3433222 223333446789999999999887655443
Q ss_pred -HhCCCCCCEeeccCcccchHHHH-hhcCCCCCCEEecc---------CCCCChHHHHHhc-CCCCCcEEEcCCCCCCHh
Q 010952 290 -LTGLCNLKCLELSDTQVGSSGLR-HLSGLTNLESINLS---------FTGISDGSLRKLA-GLSSLKSLNLDARQITDT 357 (497)
Q Consensus 290 -l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~---------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~ 357 (497)
+..+++|++|++.++ +...... ....+++|++|++. .+.+++.....+. ++++|+.|.+..+.+++.
T Consensus 309 ~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~ 387 (594)
T 2p1m_B 309 LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA 387 (594)
T ss_dssp HHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH
T ss_pred HHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH
Confidence 567899999999988 4443333 33468999999993 3467766665554 589999999888999987
Q ss_pred HHHHhc-CCCCCcEEEec--C----CCcC----h-HHHHHhhccCCCCeeeecCCCCChhhHHhhhh-cCCCCeecccCC
Q 010952 358 GLAALT-SLTGLTHLDLF--G----ARIT----D-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-LSSLTLLNLSQN 424 (497)
Q Consensus 358 ~~~~~~-~~~~L~~L~l~--~----~~~~----~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-l~~L~~L~l~~~ 424 (497)
+...+. .+++|+.|+++ + +.++ + ..+..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|
T Consensus 388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC
Confidence 776665 58999999999 3 4555 2 2344467899999999987 888887777766 899999999999
Q ss_pred CCCChhHHHHh-hcCCCCcEEEeeCCccChhHHHhh-cCCcccceeecccCCCCHHHHHHHhhcCCCCCc
Q 010952 425 CNLTDKTLELI-SGLTGLVSLNVSNSRITSAGLRHL-KPLKNLRSLTLESCKVTANDIKRLQSRDLPNLV 492 (497)
Q Consensus 425 ~~l~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~ 492 (497)
.+++..+..+ .++++|+.|++++|++++.....+ ..+++|+.|++++|+++..+++.+. ..+|+++
T Consensus 467 -~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~lp~l~ 534 (594)
T 2p1m_B 467 -GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLN 534 (594)
T ss_dssp -CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHH-HHCTTEE
T ss_pred -CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH-HhCCCCE
Confidence 7888777766 679999999999999987766544 5689999999999999999999986 5778873
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=314.03 Aligned_cols=410 Identities=15% Similarity=0.123 Sum_probs=301.7
Q ss_pred CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEE
Q 010952 51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 130 (497)
Q Consensus 51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 130 (497)
+++++|+++++.+.+..+..+..+++|++|++++| .+....+..|.++++|++|++++|.. . .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKL-V-KISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCC-C-EEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCce-e-ecCcc--ccCCccEE
Confidence 68888888888887666677888888888888887 67766677888888888888888874 3 23333 78888888
Q ss_pred eccCccccc-cccccccCCCCCCEEeccCCCCCCccccccccCCCCC--CEEEeecccc--CchhHHhhhc---------
Q 010952 131 DLERCTRIH-GGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLKG--------- 196 (497)
Q Consensus 131 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~--------- 196 (497)
++++|.... ..+..++.+++|++|++++|. +.. ..+..+++| ++|+++++.+ ....+..+..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 888865333 245678888888888888754 332 345566666 8888888777 4444444433
Q ss_pred -----------------CCCCcEEEccCCC-------CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhh---cCCCCC
Q 010952 197 -----------------LQKLTLLNLEGCP-------VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFS---KIGSLK 249 (497)
Q Consensus 197 -----------------l~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~---~l~~L~ 249 (497)
+++|+.+++++|. +.+.. ..+..+++|+.|+++++.+.......+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 4556666666654 33323 3566777788888777766543332221 245788
Q ss_pred EEEccCCCCChhHHHHh-----hCCCCcCEEeCCCCCCCHhHHHHHhC---CCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952 250 VLNLGFNEITDECLVHL-----KGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLE 321 (497)
Q Consensus 250 ~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 321 (497)
.|++++|.+.+..+..+ ..+++|+.++++.+.+ ..+...+.. ..+++.|+++++.+.... ....+++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~ 327 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence 88888777664444444 5677777777777765 221122222 257899999888765432 125789999
Q ss_pred EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHh--HHHHhcCCCCCcEEEecCCCcCh-HHHHHhhccCCCCeeeec
Q 010952 322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEIC 398 (497)
Q Consensus 322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~ 398 (497)
+|++++|.+.+..+..+.++++|+.|++++|.++.. .+..+..+++|+.|++++|.+.+ .....+..+++|++|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 999999999887777888999999999999999863 34668899999999999999987 433346788999999999
Q ss_pred CCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952 399 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 399 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 477 (497)
+|.+++..+..+. ++|++|++++| .++ .+|..+..+++|+.|++++|++++.....+..+++|+.|++++|+++.
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSN-KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCC-ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 9999877655543 79999999999 788 456667799999999999999997554558889999999999998875
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.5e-38 Score=314.63 Aligned_cols=424 Identities=21% Similarity=0.174 Sum_probs=282.7
Q ss_pred EEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccC
Q 010952 55 SVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134 (497)
Q Consensus 55 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (497)
+.+.+++.++ .+|..+ .++|++|++++| .+....+..|.++++|++|++++|. +....+..|+++++|++|++++
T Consensus 9 ~c~~~~~~l~-~ip~~~--~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT
T ss_pred eEECCCCccc-cccccC--CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCC
Confidence 3456666654 334333 379999999998 6777667789999999999999998 5666678899999999999999
Q ss_pred ccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccc-cCchhHHhhhcCCCCcEEEccCCCCChH
Q 010952 135 CTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSK-VTDSGIAYLKGLQKLTLLNLEGCPVTAA 213 (497)
Q Consensus 135 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 213 (497)
|......+..++.+++|++|++++|.......+..+..+++|++|+++++. +....+..+.++++|++|++++|.+.+.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 754433444589999999999999764432345678899999999999987 4544456789999999999999999887
Q ss_pred HHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhH---HHHhhCCCCcCEEeCCCCCCCHhHHHHH
Q 010952 214 CLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC---LVHLKGLTNLESLNLDSCGIGDEGLVNL 290 (497)
Q Consensus 214 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~l~~~~~~~l 290 (497)
.+..++.+++|+.|+++++.........+..+++|+.|++++|.+.... ......+++|+.|++.++.+.+..+..+
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 8888999999999999999877655445567999999999999887531 1123357899999999887765544333
Q ss_pred ----hCCCCCCEeeccCcc-----------------------------------------------------------cc
Q 010952 291 ----TGLCNLKCLELSDTQ-----------------------------------------------------------VG 307 (497)
Q Consensus 291 ----~~~~~L~~L~l~~~~-----------------------------------------------------------~~ 307 (497)
..+++++.+++.+|. +.
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence 233445555444433 22
Q ss_pred hHHHHhhcCCCCCCEEeccCCCCChHHHHH---hcCCCCCcEEEcCCCCCCHhHH--HHhcCCCCCcEEEecCCCcChHH
Q 010952 308 SSGLRHLSGLTNLESINLSFTGISDGSLRK---LAGLSSLKSLNLDARQITDTGL--AALTSLTGLTHLDLFGARITDSG 382 (497)
Q Consensus 308 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~ 382 (497)
......+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.++.... ..+..+++|+.|++++|+++..
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l- 402 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM- 402 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-
Confidence 111111223455555555555554433221 3344555555555555544321 2344455555555555554422
Q ss_pred HHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCC
Q 010952 383 AAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 462 (497)
Q Consensus 383 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 462 (497)
|..+..+++|+.|++++|.+..... .+ .++|++|++++| .+++. ...+++|++|++++|+++... . ...+
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~~L~~L~Ls~N-~l~~~----~~~l~~L~~L~Ls~N~l~~ip-~-~~~l 472 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIRVVKT-CI--PQTLEVLDVSNN-NLDSF----SLFLPRLQELYISRNKLKTLP-D-ASLF 472 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCSCCCT-TS--CTTCSEEECCSS-CCSCC----CCCCTTCCEEECCSSCCSSCC-C-GGGC
T ss_pred ChhhcccccccEEECCCCCcccccc-hh--cCCceEEECCCC-Chhhh----cccCChhcEEECCCCccCcCC-C-cccC
Confidence 3333444555555555555443211 11 145666666666 55542 246788888999988887432 2 4567
Q ss_pred cccceeecccCCCCHHHHHHHhhcCCCCCccCCC
Q 010952 463 KNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRP 496 (497)
Q Consensus 463 ~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~~ 496 (497)
++|+.|++++|.++......+. .+++|+.|+.
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~l 504 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFD--RLTSLQKIWL 504 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGG--GCTTCCEEEC
T ss_pred ccCCEEecCCCccCCcCHHHHh--cCcccCEEEe
Confidence 8899999999988875555454 6777776643
No 18
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=9.3e-36 Score=300.77 Aligned_cols=469 Identities=17% Similarity=0.167 Sum_probs=345.1
Q ss_pred CchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEE
Q 010952 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLD 81 (497)
Q Consensus 2 lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 81 (497)
||+|++.+||+++. ... +...+. .++..|....... -+.+.+.+.. .......+.++++|++|+
T Consensus 16 LPdeil~~I~~~L~-----~~~---d~~~~s----~vck~W~~~~~~~---~~~l~~~~~~-~~~~~~~~~~~~~L~~L~ 79 (592)
T 3ogk_B 16 TVDDVIEQVMTYIT-----DPK---DRDSAS----LVCRRWFKIDSET---REHVTMALCY-TATPDRLSRRFPNLRSLK 79 (592)
T ss_dssp CGGGTHHHHHTTCC-----CHH---HHHHHT----TSCHHHHHHHHHH---CCEEEESCGG-GSCHHHHHHHCTTCSEEE
T ss_pred CCHHHHHHHHHhcC-----CHH---HHHHHH----HHhHHHHHhhhcc---ccEEEEeecc-ccChHHHHHhCCCCeEEE
Confidence 89999999999971 111 112232 6788998875432 2344444421 123345567899999999
Q ss_pred ccCccccCh--------------hHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhC-CCC-CCEEeccCcccccc--ccc
Q 010952 82 FNFCIQISD--------------GGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAG-LIN-LVKLDLERCTRIHG--GLV 143 (497)
Q Consensus 82 l~~~~~~~~--------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~~~~~--~~~ 143 (497)
+++|..+.. ........+++|++|++++|. +.+..+..++. +++ |++|++++|..... ...
T Consensus 80 L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~ 158 (592)
T 3ogk_B 80 LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS 158 (592)
T ss_dssp EECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH
T ss_pred ecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH
Confidence 988754321 112223478999999999996 67777777766 455 99999999864322 122
Q ss_pred cccCCCCCCEEeccCCCCCCccc----cccccCCCCCCEEEeeccccC----chhHHhhhcCCCCcEEEccCCCCChHHH
Q 010952 144 NLKGLMKLESLNIKWCNCITDSD----MKPLSGLTNLKSLQISCSKVT----DSGIAYLKGLQKLTLLNLEGCPVTAACL 215 (497)
Q Consensus 144 ~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 215 (497)
....+++|++|++++|.. .+.. ......+++|++|+++++.++ ...+..+.++++|+.|++++|.+.+ .+
T Consensus 159 ~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~ 236 (592)
T 3ogk_B 159 IVTHCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV 236 (592)
T ss_dssp HHHHCTTCSEEECTTCEE-ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH
T ss_pred HHhhCCCCCEEECccccc-cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH
Confidence 345789999999999753 3322 123457899999999998886 3444556789999999999998876 56
Q ss_pred HHhhCCCCCcEEEcCCCCCC---hhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHH-HHHh
Q 010952 216 DSLSALGSLFYLNLNRCQLS---DDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLT 291 (497)
Q Consensus 216 ~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~ 291 (497)
..+..+++|++|+++..... ......+..+++|+.++++..... ..+..+..+++|+.|++++|.+..... ..+.
T Consensus 237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~ 315 (592)
T 3ogk_B 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315 (592)
T ss_dssp HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence 78899999999999864322 122334567889999999875433 344556778999999999998876655 4467
Q ss_pred CCCCCCEeeccCcccchH-HHHhhcCCCCCCEEeccC-----------CCCChHHHHH-hcCCCCCcEEEcCCCCCCHhH
Q 010952 292 GLCNLKCLELSDTQVGSS-GLRHLSGLTNLESINLSF-----------TGISDGSLRK-LAGLSSLKSLNLDARQITDTG 358 (497)
Q Consensus 292 ~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~ 358 (497)
.+++|++|++. +.+... .......+++|++|++.+ +.+++..... ...+++|+.|++..+.+++..
T Consensus 316 ~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 316 KCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred hCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence 89999999998 444443 334446789999999993 5677655544 456899999999889999887
Q ss_pred HHHhcC-CCCCcEEEec----CCCcCh-----HHHHHhhccCCCCeeeecCCC--CChhhHHhhhh-cCCCCeecccCCC
Q 010952 359 LAALTS-LTGLTHLDLF----GARITD-----SGAAYLRNFKNLRSLEICGGG--LTDAGVKHIKD-LSSLTLLNLSQNC 425 (497)
Q Consensus 359 ~~~~~~-~~~L~~L~l~----~~~~~~-----~~~~~l~~~~~L~~L~l~~~~--l~~~~~~~~~~-l~~L~~L~l~~~~ 425 (497)
...+.. +++|+.|+++ .+.+++ ..+..+..+++|+.|+++.|. +++.....+.. +++|++|++++|
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n- 473 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV- 473 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-
Confidence 777765 8999999996 456664 245556789999999998653 78777776655 899999999999
Q ss_pred CCChhH-HHHhhcCCCCcEEEeeCCccChhHHHh-hcCCcccceeecccCCCCHHHHHHHhhcCCCCCcc
Q 010952 426 NLTDKT-LELISGLTGLVSLNVSNSRITSAGLRH-LKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVS 493 (497)
Q Consensus 426 ~l~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~ 493 (497)
.+++.. +..+.++++|+.|++++|++++..... ...+++|+.|++++|.+++.+++.+. ..+|.+..
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~~ 542 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWNI 542 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEEE
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcEE
Confidence 788754 445578999999999999988765544 36789999999999999999998887 67887654
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-38 Score=322.49 Aligned_cols=407 Identities=16% Similarity=0.187 Sum_probs=322.2
Q ss_pred CCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCC------CC---------hH-----------------HH----
Q 010952 75 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNA------IT---------AQ-----------------GM---- 118 (497)
Q Consensus 75 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~---------~~-----------------~~---- 118 (497)
.+++.|+++++ .+.+..+.+++.+++|++|++++|.. .. .. .+
T Consensus 81 ~~V~~L~L~~~-~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTS-CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCc-ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 58999999998 67777888999999999999999852 00 00 00
Q ss_pred ----HHH-----------hCCCCCCEEeccC-ccccccccccccCCCCCCEEeccCCCCCCcc-----------------
Q 010952 119 ----KAF-----------AGLINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITDS----------------- 165 (497)
Q Consensus 119 ----~~l-----------~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----------------- 165 (497)
... .....++.+.+.. +..+.+.+..++++++|++|++++|. +.+.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhccc
Confidence 000 0011222222322 23455577789999999999999966 5543
Q ss_pred cccccc--CCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC-CCh-HHHHHhhCC------CCCcEEEcCCCCCC
Q 010952 166 DMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA-ACLDSLSAL------GSLFYLNLNRCQLS 235 (497)
Q Consensus 166 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~ 235 (497)
.+..++ .+++|++|++++|.+....+..+.++++|++|++++|. +++ ..|..++.+ ++|++|++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 677888 99999999999999988888999999999999999998 887 788888876 99999999999998
Q ss_pred hhHhH--hhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCC-CCEeeccCcccchHHHH
Q 010952 236 DDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSGLR 312 (497)
Q Consensus 236 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~ 312 (497)
..+. .++.+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+. ..+.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 5565 78999999999999999885555 6788899999999999776 34455777888 999999999987 3344
Q ss_pred hhcCC--CCCCEEeccCCCCChHHHHHhc-------CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHH
Q 010952 313 HLSGL--TNLESINLSFTGISDGSLRKLA-------GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 383 (497)
Q Consensus 313 ~l~~~--~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 383 (497)
.+... ++|++|++++|.+....+..+. .+++|+.|++++|.++......+..+++|+.|++++|.++...+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 55544 4899999999999876666666 67899999999999987655667789999999999999885433
Q ss_pred HHhhcc-------CCCCeeeecCCCCChhhHHhhh--hcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEee------C
Q 010952 384 AYLRNF-------KNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS------N 448 (497)
Q Consensus 384 ~~l~~~-------~~L~~L~l~~~~l~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~------~ 448 (497)
..+... ++|+.|++++|.++.. +..+. .+++|++|++++| .++. +|..+..+++|+.|+++ +
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred HHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 333322 3999999999999965 45554 8899999999999 7887 67888899999999995 5
Q ss_pred CccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccCC
Q 010952 449 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 495 (497)
Q Consensus 449 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~ 495 (497)
|.+.+..+..+..+++|+.|++++|.++.. .....++|+.|+
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i-----p~~~~~~L~~L~ 593 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDIRKV-----NEKITPNISVLD 593 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCCBC-----CSCCCTTCCEEE
T ss_pred CcccccChHHHhcCCCCCEEECCCCcCCcc-----CHhHhCcCCEEE
Confidence 677777888899999999999999998442 212336676654
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=330.33 Aligned_cols=417 Identities=20% Similarity=0.226 Sum_probs=239.5
Q ss_pred eEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEecc
Q 010952 54 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 133 (497)
Q Consensus 54 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (497)
+..+.++++++ .+|. -.++|++|++++| .+....+..|.++++|++|++++|.......+..|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 45677777765 3443 4579999999998 67777778899999999999999965445457889999999999999
Q ss_pred CccccccccccccCCCCCCEEeccCCCCCCccccc--cccCCCCCCEEEeeccccCchhH-HhhhcCCCCcEEEccCCCC
Q 010952 134 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMK--PLSGLTNLKSLQISCSKVTDSGI-AYLKGLQKLTLLNLEGCPV 210 (497)
Q Consensus 134 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 210 (497)
+|......+..+.++++|++|++++|. +.+..+. .+..+++|++|++++|.+....+ ..++++++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 976555557889999999999999965 4433333 48899999999999999887654 5789999999999999988
Q ss_pred ChHHHHHhhCC--CCCcEEEcCCCCCChhHhHhhhcCCC------CCEEEccCCCCChhHHHH-----------------
Q 010952 211 TAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGS------LKVLNLGFNEITDECLVH----------------- 265 (497)
Q Consensus 211 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~----------------- 265 (497)
....+..+..+ ++|+.|++++|.+....+..++.+++ |+.|++++|.+....+..
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 66545555444 55666666555544433332222222 455555444322111100
Q ss_pred -------------------hhC--CCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEe
Q 010952 266 -------------------LKG--LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 324 (497)
Q Consensus 266 -------------------l~~--~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 324 (497)
+.. .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 000 13444444444444433333334444444444444444433333344444444444
Q ss_pred ccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChH-----------------------
Q 010952 325 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS----------------------- 381 (497)
Q Consensus 325 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------------------- 381 (497)
+++|.+....+..+.++++|+.|++++|.+.......+..+++|+.|++++|.++..
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~ 400 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccc
Confidence 444444333333344444444444444444333323333344444444444433221
Q ss_pred -----------------HHHHhhccCCCCeeeecCCCCChhhHH-hhhhcCCCCeecccCCCCCC-----hhHHHHhhcC
Q 010952 382 -----------------GAAYLRNFKNLRSLEICGGGLTDAGVK-HIKDLSSLTLLNLSQNCNLT-----DKTLELISGL 438 (497)
Q Consensus 382 -----------------~~~~l~~~~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~l~-----~~~~~~l~~~ 438 (497)
.+..+..+++|+.|++++|.+.+.... .+..+++|+.|++++| .++ +..+..+.++
T Consensus 401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGL 479 (844)
T ss_dssp TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCB
T ss_pred cccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC-ccccccccccchhhhcCc
Confidence 112233556666666666655533211 1222345555555555 332 1112234445
Q ss_pred CCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952 439 TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 439 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 477 (497)
++|+.|++++|.+++..+..+..+++|+.|++++|.++.
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 555555555555555544555555556666665555543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.7e-37 Score=312.80 Aligned_cols=405 Identities=16% Similarity=0.155 Sum_probs=314.0
Q ss_pred CCcCEEEccCccccChhHHHHhhCCCCCCEEEc-CCCCCCChH-------------------------------------
Q 010952 75 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQ------------------------------------- 116 (497)
Q Consensus 75 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~------------------------------------- 116 (497)
.++..|+|+++ .+.+..+..++.+++|++|++ ++|.. .+.
T Consensus 323 ~~V~~L~Ls~~-~L~G~ip~~l~~L~~L~~LdLss~N~l-sG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGF-GAKGRVPDAIGQLTELKVLSFGTHSET-VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTT-CCEEEECGGGGGCTTCCEEESCCTTHH-HHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccC-CCCCcCchHHhccccceEeeecccccc-cccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 58999999998 677778889999999999999 65531 111
Q ss_pred ---HHHHHhC-----------CCCCCEEeccC-ccccccccccccCCCCCCEEeccCCCCCCc-----------------
Q 010952 117 ---GMKAFAG-----------LINLVKLDLER-CTRIHGGLVNLKGLMKLESLNIKWCNCITD----------------- 164 (497)
Q Consensus 117 ---~~~~l~~-----------l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------- 164 (497)
.+..+.. ...++.+.+.. +..+.+.|..++++++|++|++++|. +.+
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccc
Confidence 1111211 11222222322 12344467789999999999999965 444
Q ss_pred ccccccc--CCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC-CCh-HHHHHhhCCC-------CCcEEEcCCCC
Q 010952 165 SDMKPLS--GLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP-VTA-ACLDSLSALG-------SLFYLNLNRCQ 233 (497)
Q Consensus 165 ~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~~l~-------~L~~L~l~~~~ 233 (497)
..+..++ .+++|++|++++|.+....+..+.++++|+.|++++|. +.+ .+|..++.++ +|+.|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 2567776 99999999999999888888999999999999999998 887 7888777665 99999999999
Q ss_pred CChhHhH--hhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCC-CCEeeccCcccchHH
Q 010952 234 LSDDGCE--KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN-LKCLELSDTQVGSSG 310 (497)
Q Consensus 234 ~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~ 310 (497)
+. ..+. .++.+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 98 5565 7899999999999999988 444 7888999999999999887 44555777888 999999999987 33
Q ss_pred HHhhcCCC--CCCEEeccCCCCChHHHH---Hhc--CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHH
Q 010952 311 LRHLSGLT--NLESINLSFTGISDGSLR---KLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 383 (497)
Q Consensus 311 ~~~l~~~~--~L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 383 (497)
+..+...+ +|+.|++++|.+....+. .+. ..++|+.|++++|.++......+..+++|+.|++++|.+.....
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 45555444 499999999988654321 122 34589999999999997666666789999999999999885433
Q ss_pred HHhh-------ccCCCCeeeecCCCCChhhHHhhh--hcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeC------
Q 010952 384 AYLR-------NFKNLRSLEICGGGLTDAGVKHIK--DLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN------ 448 (497)
Q Consensus 384 ~~l~-------~~~~L~~L~l~~~~l~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~------ 448 (497)
..+. .+++|+.|++++|.++.. +..+. .+++|+.|+|++| .++. +|..+..+++|+.|++++
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred HHhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 3322 234999999999999965 55555 7899999999999 7887 577888999999999987
Q ss_pred CccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccCC
Q 010952 449 SRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFR 495 (497)
Q Consensus 449 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~ 495 (497)
|.+.+..+..+..+++|+.|++++|.++. +...-.++|+.|+
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-----Ip~~l~~~L~~Ld 833 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDIRK-----VDEKLTPQLYILD 833 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCCB-----CCSCCCSSSCEEE
T ss_pred ccccccChHHHhcCCCCCEEECCCCCCCc-----cCHhhcCCCCEEE
Confidence 67777788889999999999999999843 2222335666654
No 22
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3e-34 Score=280.65 Aligned_cols=391 Identities=25% Similarity=0.283 Sum_probs=256.9
Q ss_pred CCcCEEEccCccccChhHHHH-hhCCCCCCEEEcCCCCCCCh----HHHHHHhCCCCCCEEeccCccccccccccc-cCC
Q 010952 75 SNLQSLDFNFCIQISDGGLEH-LRGLSNLTSLSFRRNNAITA----QGMKAFAGLINLVKLDLERCTRIHGGLVNL-KGL 148 (497)
Q Consensus 75 ~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l 148 (497)
++|++|+++++ .+....... +..+++|++|++++|.. .+ .++..+..+++|++|++++|......+..+ ..+
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCC-CHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 57888888877 566554444 67788899999988873 43 345667778888888888754222122111 122
Q ss_pred C----CCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCc----hhHHhhhcCCCCcEEEccCCCCChHHHHHhh-
Q 010952 149 M----KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTD----SGIAYLKGLQKLTLLNLEGCPVTAACLDSLS- 219 (497)
Q Consensus 149 ~----~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~- 219 (497)
+ +|++|++++ |.+++ ..+..+..+++|++|++++|.+....+..+.
T Consensus 81 ~~~~~~L~~L~L~~-------------------------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 81 QTPSCKIQKLSLQN-------------------------CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp CSTTCCCCEEECTT-------------------------SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred hhCCCceeEEEccC-------------------------CCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 2 455555554 44442 2234444555555555555554433232222
Q ss_pred ----CCCCCcEEEcCCCCCChhH----hHhhhcCCCCCEEEccCCCCChhHHHHhh-----CCCCcCEEeCCCCCCCHhH
Q 010952 220 ----ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNEITDECLVHLK-----GLTNLESLNLDSCGIGDEG 286 (497)
Q Consensus 220 ----~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~l~~~~ 286 (497)
..++|++|++++|.+.... +..+..+++|+.|++++|.+.......+. ..++|+.|++++|.+....
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 1345666666666555432 33344556666666666665543333222 3557777777777666532
Q ss_pred ----HHHHhCCCCCCEeeccCcccchHHHHh-----hcCCCCCCEEeccCCCCChHH----HHHhcCCCCCcEEEcCCCC
Q 010952 287 ----LVNLTGLCNLKCLELSDTQVGSSGLRH-----LSGLTNLESINLSFTGISDGS----LRKLAGLSSLKSLNLDARQ 353 (497)
Q Consensus 287 ----~~~l~~~~~L~~L~l~~~~~~~~~~~~-----l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~ 353 (497)
+..+..+++|++|++++|.++...... ...+++|++|++++|.++... +..+.++++|+.|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 344556777888888877766543222 235788888888888887653 4455668899999999988
Q ss_pred CCHhHHHHhc-----CCCCCcEEEecCCCcChH----HHHHhhccCCCCeeeecCCCCChhhHHhhhh-----cCCCCee
Q 010952 354 ITDTGLAALT-----SLTGLTHLDLFGARITDS----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKD-----LSSLTLL 419 (497)
Q Consensus 354 ~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-----l~~L~~L 419 (497)
+++.+...+. ..++|+.|++++|.++.. .+..+..+++|++|++++|.+++.++..+.. .++|++|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 8776554443 236899999999988865 4556678899999999999998877766654 5799999
Q ss_pred cccCCCCCCh----hHHHHhhcCCCCcEEEeeCCccChhHHHhhc-----CCcccceeecccCCCCHHH---HHHHhhcC
Q 010952 420 NLSQNCNLTD----KTLELISGLTGLVSLNVSNSRITSAGLRHLK-----PLKNLRSLTLESCKVTAND---IKRLQSRD 487 (497)
Q Consensus 420 ~l~~~~~l~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~---~~~l~~~~ 487 (497)
++++| .+++ ..+..+..+++|++|++++|++++.....+. ..++|+.|.+.++.+.... ++.+. ..
T Consensus 376 ~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~-~~ 453 (461)
T 1z7x_W 376 WLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE-KD 453 (461)
T ss_dssp ECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHH-HH
T ss_pred ECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHh-cc
Confidence 99999 8887 5677888899999999999999987655442 3457889998888777644 44444 66
Q ss_pred CCCCccC
Q 010952 488 LPNLVSF 494 (497)
Q Consensus 488 ~p~L~~l 494 (497)
.|+++.+
T Consensus 454 ~p~l~i~ 460 (461)
T 1z7x_W 454 KPSLRVI 460 (461)
T ss_dssp CTTSEEE
T ss_pred CCCcEee
Confidence 7887654
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.3e-36 Score=296.00 Aligned_cols=392 Identities=15% Similarity=0.149 Sum_probs=307.8
Q ss_pred HhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCC
Q 010952 47 ASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLIN 126 (497)
Q Consensus 47 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 126 (497)
...+++|++|+++++.+++..+..++++++|++|++++| .+... +.. .+++|++|++++|.......|..++++++
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeec-Ccc--ccCCccEEeccCCccccccchhhhccCCc
Confidence 346899999999999998777888999999999999998 56643 222 79999999999998543346788999999
Q ss_pred CCEEeccCccccccccccccCCCCC--CEEeccCCCCC-Ccccccc--------------------------ccCCCCCC
Q 010952 127 LVKLDLERCTRIHGGLVNLKGLMKL--ESLNIKWCNCI-TDSDMKP--------------------------LSGLTNLK 177 (497)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~-~~~~~~~--------------------------l~~l~~L~ 177 (497)
|++|++++|. +.. ..+..+++| ++|++++|... ....+.. +..+++|+
T Consensus 117 L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 117 LKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193 (520)
T ss_dssp CCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred ceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence 9999999965 332 456677788 99999986541 1222222 23477888
Q ss_pred EEEeeccc-------cCchhHHhhhcCCCCcEEEccCCCCChHHHHHhh---CCCCCcEEEcCCCCCChhHhHhh-----
Q 010952 178 SLQISCSK-------VTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLS---ALGSLFYLNLNRCQLSDDGCEKF----- 242 (497)
Q Consensus 178 ~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~l----- 242 (497)
.++++++. +.+.. ..+..+++|+.|+++++.+.+..+..+. ..++|++|++++|.+.+..+..+
T Consensus 194 ~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 272 (520)
T 2z7x_B 194 LSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272 (520)
T ss_dssp ECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCS
T ss_pred eccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccc
Confidence 88888775 44333 4788999999999999988764443332 25799999999998876666666
Q ss_pred hcCCCCCEEEccCCCCChhHHHHhh---CCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCC
Q 010952 243 SKIGSLKVLNLGFNEITDECLVHLK---GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTN 319 (497)
Q Consensus 243 ~~l~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 319 (497)
+.+++|+.++++++.+. .....+. ...+|+.|+++++.+..... ...+++|++|++++|.+....+..+..+++
T Consensus 273 ~~l~~L~~l~l~~n~~~-~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp CCCCEEEEEEEEECCCC-SCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred ccCceeEecccccccee-cchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 78899999999998772 2112222 23689999999997754321 257899999999999998877788899999
Q ss_pred CCEEeccCCCCCh--HHHHHhcCCCCCcEEEcCCCCCCH-hHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeee
Q 010952 320 LESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 396 (497)
Q Consensus 320 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 396 (497)
|++|++++|.+.. ..+..+.++++|+.|++++|.++. .....+..+++|+.|++++|.+++..+..+ .++|+.|+
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~~L~~L~ 427 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLD 427 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC--CTTCCEEE
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh--cccCCEEE
Confidence 9999999999986 445778999999999999999987 444457788999999999999987655443 27999999
Q ss_pred ecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccCh
Q 010952 397 ICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 453 (497)
Q Consensus 397 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~ 453 (497)
+++|+++.. +..+..+++|++|++++| .++......+..+++|++|++++|++..
T Consensus 428 Ls~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 428 LHSNKIKSI-PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccccc-chhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence 999999965 555558999999999999 7886444458889999999999999874
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-35 Score=289.06 Aligned_cols=361 Identities=17% Similarity=0.198 Sum_probs=237.0
Q ss_pred CCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCcccccc-ccccccCCCCCCEEeccCCCCCCccccccccCCCCCCE
Q 010952 100 SNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 178 (497)
Q Consensus 100 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 178 (497)
++|++|++++|. +....+..++++++|++|++++|..... .+..+..+++|++|++++|. +....+..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCE
Confidence 689999999987 4555677888899999999998754322 24567888899999998854 45555677888888999
Q ss_pred EEeeccccCchhHHh--hhcCCCCcEEEccCCCCChHHHHH-hhCCCCCcEEEcCCCCCChhHhHhhhcC--CCCCEEEc
Q 010952 179 LQISCSKVTDSGIAY--LKGLQKLTLLNLEGCPVTAACLDS-LSALGSLFYLNLNRCQLSDDGCEKFSKI--GSLKVLNL 253 (497)
Q Consensus 179 L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l 253 (497)
|++++|.+++..+.. +.++++|++|++++|.+.+..+.. +..+++|++|++++|.+....+..+..+ .+++.+++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 998888888755554 788888888888888887654544 6788888888888888777666666554 67888888
Q ss_pred cCCCCChhHHH--------HhhCCCCcCEEeCCCCCCCHhHHHHHhC---CCCCCEeeccCcccchHHHHhhcCCCCCCE
Q 010952 254 GFNEITDECLV--------HLKGLTNLESLNLDSCGIGDEGLVNLTG---LCNLKCLELSDTQVGSSGLRHLSGLTNLES 322 (497)
Q Consensus 254 ~~~~~~~~~~~--------~l~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 322 (497)
+++.+...... .+..+++|+.|++++|.+....+..+.. .++++.|+++++........ ...++.+
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~-- 264 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDP-- 264 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCC--
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccC--
Confidence 88776642211 1234577888888888877766655543 36778888777643321100 0000000
Q ss_pred EeccCCCCChHHHHHhc--CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCC
Q 010952 323 INLSFTGISDGSLRKLA--GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 400 (497)
Q Consensus 323 L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 400 (497)
....+. ..++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 265 -----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 265 -----------DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp -----------CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -----------cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 000001 2345666666666665554455556666666666666666555555566666666666666
Q ss_pred CCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952 401 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 401 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 477 (497)
.+++..+..+..+++|++|++++| .++...+..+..+++|++|++++|++++.....+..+++|+.|++++|+++.
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 666655555666666666666666 5665555566666666666666666665554555666666666666666544
No 25
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.7e-32 Score=268.13 Aligned_cols=353 Identities=24% Similarity=0.318 Sum_probs=203.9
Q ss_pred CCceeEEEeeCCCCChHHHHH-hcCCCCcCEEEccCccccChh----HHHHhhCCCCCCEEEcCCCCCCChHHHHHH-hC
Q 010952 50 GSSLLSVDLSGSDVTDSGLIH-LKDCSNLQSLDFNFCIQISDG----GLEHLRGLSNLTSLSFRRNNAITAQGMKAF-AG 123 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~ 123 (497)
.+++++|+++++.+++..... +..+++|++|++++| .+... .+..+..+++|++|++++|. +.+..+..+ ..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 468999999999998766555 789999999999998 56643 34567788999999999998 455545444 34
Q ss_pred CC----CCCEEeccCccccc----cccccccCCCCCCEEeccCCCCCCcccccccc-----CCCCCCEEEeeccccCchh
Q 010952 124 LI----NLVKLDLERCTRIH----GGLVNLKGLMKLESLNIKWCNCITDSDMKPLS-----GLTNLKSLQISCSKVTDSG 190 (497)
Q Consensus 124 l~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~ 190 (497)
++ +|++|++++|.... ..+..+..+++|++|++++|. +.+..+..+. ..++|++|+++++.+++..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 66 79999999985332 224567778888888888754 4333333222 2456777777777776543
Q ss_pred ----HHhhhcCCCCcEEEccCCCCChHHHHHhh-----CCCCCcEEEcCCCCCChhH----hHhhhcCCCCCEEEccCCC
Q 010952 191 ----IAYLKGLQKLTLLNLEGCPVTAACLDSLS-----ALGSLFYLNLNRCQLSDDG----CEKFSKIGSLKVLNLGFNE 257 (497)
Q Consensus 191 ----~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~ 257 (497)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.... +..+..+++|+.|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 34445567777777777776554343332 2456777777777665532 3444556666666666666
Q ss_pred CChhHHHH-----hhCCCCcCEEeCCCCCCCHhH----HHHHhCCCCCCEeeccCcccchHHHHhhc-----CCCCCCEE
Q 010952 258 ITDECLVH-----LKGLTNLESLNLDSCGIGDEG----LVNLTGLCNLKCLELSDTQVGSSGLRHLS-----GLTNLESI 323 (497)
Q Consensus 258 ~~~~~~~~-----l~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L 323 (497)
+....... ...+++|+.|++++|.++... +..+..+++|++|++++|.++......+. ..++|++|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 55432211 123566666666666665542 22333455666666665555443332221 12355555
Q ss_pred eccCCCCChHH----HHHhcCCCCCcEEEcCCCCCCHhHHHHhcC-----CCCCcEEEecCCCcCh----HHHHHhhccC
Q 010952 324 NLSFTGISDGS----LRKLAGLSSLKSLNLDARQITDTGLAALTS-----LTGLTHLDLFGARITD----SGAAYLRNFK 390 (497)
Q Consensus 324 ~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~l~~~~ 390 (497)
++++|.++... +..+..+++|+.|++++|.+++.++..+.. .++|+.|++++|.+++ ..+..+..++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 55555544331 222333444555555444444433322221 3344444444444443 2233333344
Q ss_pred CCCeeeecCCCCChh
Q 010952 391 NLRSLEICGGGLTDA 405 (497)
Q Consensus 391 ~L~~L~l~~~~l~~~ 405 (497)
+|++|++++|++++.
T Consensus 399 ~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 399 SLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCEEECCSSSCCHH
T ss_pred CccEEECCCCCCCHH
Confidence 444444444444433
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.2e-35 Score=293.20 Aligned_cols=412 Identities=19% Similarity=0.184 Sum_probs=266.4
Q ss_pred CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEE
Q 010952 51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 130 (497)
Q Consensus 51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 130 (497)
...+++++++++++. +|..+. ++|++|++++| .+....+..|.++++|++|++++|. +....|..|+++++|++|
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEE
Confidence 344777777776653 443332 67777777776 5655555667777777777777776 445556667777777777
Q ss_pred eccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCC
Q 010952 131 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPV 210 (497)
Q Consensus 131 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 210 (497)
++++|. +...+.. .+++|++|++++|....-..+..+..+++|++|+++++.+.......+..+ +|+.|++++|.+
T Consensus 106 ~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 106 DVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp ECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred ECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence 777754 3333333 677777777777543322234566777777777777777665332222222 237777776655
Q ss_pred --ChHHHHHhh--------------------------CCCCCcEEEcCCCCCC----hhHhHhhhcCCCCCEEEccCCCC
Q 010952 211 --TAACLDSLS--------------------------ALGSLFYLNLNRCQLS----DDGCEKFSKIGSLKVLNLGFNEI 258 (497)
Q Consensus 211 --~~~~~~~l~--------------------------~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~ 258 (497)
....+..+. .+++|+.+++++|... ......+..+++++.+++..+.+
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 322222222 2345555555554311 11122344455555555554444
Q ss_pred ChhHHHH---hhCCCCcCEEeCCCCCCCH-------------------------------hHHHHHhCCCCCCEeeccCc
Q 010952 259 TDECLVH---LKGLTNLESLNLDSCGIGD-------------------------------EGLVNLTGLCNLKCLELSDT 304 (497)
Q Consensus 259 ~~~~~~~---l~~~~~L~~L~l~~~~l~~-------------------------------~~~~~l~~~~~L~~L~l~~~ 304 (497)
....... ....++|+.|++++|.+.+ .....+....++++|+++++
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 3211111 1122345555544443321 11111112356888888887
Q ss_pred ccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHh--HHHHhcCCCCCcEEEecCCCcCh-H
Q 010952 305 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT--GLAALTSLTGLTHLDLFGARITD-S 381 (497)
Q Consensus 305 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~ 381 (497)
.+.... ....+++|++|++++|.+.+..+..+.++++|+.|++++|.++.. .+..+..+++|+.|++++|.+.+ .
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 764321 125788999999999999887777888999999999999999863 34567889999999999999887 4
Q ss_pred HHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcC
Q 010952 382 GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKP 461 (497)
Q Consensus 382 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~ 461 (497)
.+..+..+++|+.|++++|.+++..+..++ ++|++|++++| .++. +|..+..+++|+.|++++|++++.....+..
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 334467789999999999999876554443 79999999999 7885 5555668999999999999999755445889
Q ss_pred CcccceeecccCCCCH
Q 010952 462 LKNLRSLTLESCKVTA 477 (497)
Q Consensus 462 ~~~L~~L~l~~~~~~~ 477 (497)
+++|+.|++++|+++.
T Consensus 496 l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTCCCEECCSCCBCC
T ss_pred CCCCCEEEecCCCcCC
Confidence 9999999999998874
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-34 Score=283.17 Aligned_cols=382 Identities=18% Similarity=0.180 Sum_probs=286.7
Q ss_pred eEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEecc
Q 010952 54 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 133 (497)
Q Consensus 54 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (497)
+.++.++.+++ .+|. -.++|++|++++| .+....+..|.++++|++|++++|.......+..|.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~---l~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE---LPAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC---CCTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC---CCCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35666666554 2332 2278999999998 67777788899999999999999975334446779999999999999
Q ss_pred CccccccccccccCCCCCCEEeccCCCCCCcccc--ccccCCCCCCEEEeeccccCchhHHh-hhcCCCCcEEEccCCCC
Q 010952 134 RCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM--KPLSGLTNLKSLQISCSKVTDSGIAY-LKGLQKLTLLNLEGCPV 210 (497)
Q Consensus 134 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 210 (497)
+|......+..++.+++|++|++++|. +.+..+ ..+..+++|++|++++|.+....+.. +.++++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 976555557789999999999999965 433223 33889999999999999998776654 78999999999999998
Q ss_pred ChHHHHHhhCC--CCCcEEEcCCCCCChhHhHh--------hhcCCCCCEEEccCCCCChhHHHHhhC---CCCcCEEeC
Q 010952 211 TAACLDSLSAL--GSLFYLNLNRCQLSDDGCEK--------FSKIGSLKVLNLGFNEITDECLVHLKG---LTNLESLNL 277 (497)
Q Consensus 211 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l 277 (497)
.+..+..+..+ .+|+.++++++.+....+.. +..+++|+.|++++|.+....+..+.. .++|+.+++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 87666666665 78999999999877643322 235688999999999998766665543 489999999
Q ss_pred CCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHh
Q 010952 278 DSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDT 357 (497)
Q Consensus 278 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 357 (497)
+++........ ...++.+. ... .. -...++|+++++++|.+....+..+..+++|+.|++++|.++..
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~-----~~~-----~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 247 SNSYNMGSSFG-HTNFKDPD-----NFT-----FK-GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp TTCTTTSCCTT-CCSSCCCC-----TTT-----TG-GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccc-hhhhccCc-----ccc-----cc-cccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 98854332110 00111100 000 00 01246788888888877766666677788888888888888776
Q ss_pred HHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhc
Q 010952 358 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 437 (497)
Q Consensus 358 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~ 437 (497)
.+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++..+..+..
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 393 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDR 393 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhcc
Confidence 6667777888888888888887776777778888888888888888877777788888888888888 777766666778
Q ss_pred CCCCcEEEeeCCccChh
Q 010952 438 LTGLVSLNVSNSRITSA 454 (497)
Q Consensus 438 ~~~L~~L~l~~~~l~~~ 454 (497)
+++|++|++++|+++..
T Consensus 394 l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CTTCCEEECCSSCBCCC
T ss_pred CCcccEEEccCCCcccC
Confidence 88888888888887653
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6e-32 Score=263.84 Aligned_cols=345 Identities=28% Similarity=0.359 Sum_probs=190.4
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
++++++|+++++.+.. . ..+..+++|++|++++| .+....+ +..+++|++|++++|.. ....+ ++++++|++
T Consensus 45 l~~l~~L~l~~~~i~~-l-~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQI-ADITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCcc-C-cchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCcc-ccChh--hcCCCCCCE
Confidence 3577888887776643 2 23667778888888776 4554333 67777777777777763 33322 677777777
Q ss_pred EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952 130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 209 (497)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 209 (497)
|++++|. +...+. +..+++|++|++++|. +.+ ...+..+++|++|++.+ .+... ..+.++++|++|++++|.
T Consensus 117 L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~--~~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECC--CGGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCC--ChhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCc
Confidence 7777753 333322 6666777777776643 221 23455666666666642 22221 125556666666666665
Q ss_pred CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952 210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 289 (497)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 289 (497)
+... ..+..+++|++|++++|.+....+ ++.+++|+.|++++|.+... ..+..+++|
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L----------------- 245 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL----------------- 245 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTC-----------------
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCC-----------------
Confidence 5442 234555556666655555544322 34455555555555544432 123344444
Q ss_pred HhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCc
Q 010952 290 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLT 369 (497)
Q Consensus 290 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 369 (497)
++|++++|.+....+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.++...+ +..+++|+
T Consensus 246 -------~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 246 -------TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp -------SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred -------CEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 444444444433221 3444555555555554443222 4455555555555555554322 44556666
Q ss_pred EEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCC
Q 010952 370 HLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 449 (497)
Q Consensus 370 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 449 (497)
.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++| .+++..+ +..+++|+.|++++|
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCE
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCC
Confidence 66666666555433 45566666666666666554 24555666666666666 5555444 556666666666666
Q ss_pred ccCh
Q 010952 450 RITS 453 (497)
Q Consensus 450 ~l~~ 453 (497)
++++
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 6554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.6e-32 Score=265.40 Aligned_cols=346 Identities=30% Similarity=0.372 Sum_probs=246.4
Q ss_pred CCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCC
Q 010952 73 DCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLE 152 (497)
Q Consensus 73 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 152 (497)
.+++++.|++.++ .+... ..+..+++|++|++++|.. ....+ +.++++|++|++++|. +...+. +..+++|+
T Consensus 44 ~l~~l~~L~l~~~-~i~~l--~~~~~l~~L~~L~Ls~n~l-~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSI--DGVEYLNNLTQINFSNNQL-TDITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSS-CCCCC--TTGGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred HhccccEEecCCC-CCccC--cchhhhcCCCEEECCCCcc-CCchh--hhccccCCEEECCCCc-cccChh-hcCCCCCC
Confidence 3467888888877 44432 2467788888888888863 33333 7788888888888754 333333 77777777
Q ss_pred EEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCC
Q 010952 153 SLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRC 232 (497)
Q Consensus 153 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 232 (497)
+|++++|. +.+. ..+..+++|++|+++++.+.+. ..+.++++|+.|++.++ +... ..+..+++|+.|++++|
T Consensus 116 ~L~L~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~~-~~~~--~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQ-ITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQ-VTDL--KPLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSC-CCCC--GGGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEES-CCCC--GGGTTCTTCCEEECCSS
T ss_pred EEECCCCC-CCCC--hHHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCCc-ccCc--hhhccCCCCCEEECcCC
Confidence 77777754 3322 2266777777777777666542 23556666666666432 2221 12444555555555555
Q ss_pred CCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHH
Q 010952 233 QLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLR 312 (497)
Q Consensus 233 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 312 (497)
.+... . .+..+++|+.|++++|.+....+ +..+++|++|++++|.+... .
T Consensus 188 ~l~~~--~------------------------~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 237 (466)
T 1o6v_A 188 KVSDI--S------------------------VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--G 237 (466)
T ss_dssp CCCCC--G------------------------GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--G
T ss_pred cCCCC--h------------------------hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--h
Confidence 44321 1 24445556666665555544332 44566777777777766543 3
Q ss_pred hhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCC
Q 010952 313 HLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 392 (497)
Q Consensus 313 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 392 (497)
.+..+++|++|++++|.+....+ +..+++|+.|++++|.++...+ +..+++|+.|++++|.+.+..+ +..+++|
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 46778999999999998876544 7889999999999999987543 7889999999999999887544 7889999
Q ss_pred CeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeeccc
Q 010952 393 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLES 472 (497)
Q Consensus 393 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 472 (497)
+.|++++|.+.+..+ +..+++|++|++++| .+++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNN-KVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCC-ccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence 999999999998755 678999999999999 78775 468899999999999999988765 88999999999999
Q ss_pred CCCCH
Q 010952 473 CKVTA 477 (497)
Q Consensus 473 ~~~~~ 477 (497)
|+++.
T Consensus 385 n~~~~ 389 (466)
T 1o6v_A 385 QAWTN 389 (466)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 98765
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6e-34 Score=290.35 Aligned_cols=423 Identities=22% Similarity=0.209 Sum_probs=293.4
Q ss_pred CceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEE
Q 010952 51 SSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKL 130 (497)
Q Consensus 51 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 130 (497)
+++++|+|++|.++...+..|.++++|++|++++| .+....+.+|.++++|++|+|++|. +....+..|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEE
Confidence 47999999999998666678999999999999998 7877777889999999999999998 566666789999999999
Q ss_pred eccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCC----CcEEEcc
Q 010952 131 DLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQK----LTLLNLE 206 (497)
Q Consensus 131 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~----L~~L~l~ 206 (497)
++++|......+..++++++|++|++++|.......+..+..+++|++|++++|.++...+..+..+.+ ...++++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 999975333333568999999999999976544445677889999999999999988665555433322 2234444
Q ss_pred CCCCC------------------------hHHHHHhhCCCCCcEEEcCCCC------CChh-------------------
Q 010952 207 GCPVT------------------------AACLDSLSALGSLFYLNLNRCQ------LSDD------------------- 237 (497)
Q Consensus 207 ~~~~~------------------------~~~~~~l~~l~~L~~L~l~~~~------~~~~------------------- 237 (497)
.+.+. ......+..+..++...+.... +...
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 44332 1122334444444443331100 0000
Q ss_pred --------H----------------------hHhhhcCCCCCEEEccCCCCChhHHH-------------------HhhC
Q 010952 238 --------G----------------------CEKFSKIGSLKVLNLGFNEITDECLV-------------------HLKG 268 (497)
Q Consensus 238 --------~----------------------~~~l~~l~~L~~L~l~~~~~~~~~~~-------------------~l~~ 268 (497)
. ...+.....++.|++.++.+...... ....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 369 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 369 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc
Confidence 0 00112223444444444332211000 0112
Q ss_pred CCCcCEEeCCCCCCCHh--HHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChH-HHHHhcCCCCCc
Q 010952 269 LTNLESLNLDSCGIGDE--GLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLK 345 (497)
Q Consensus 269 ~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~ 345 (497)
+++|+.++++.+.+... .+.......+++.+++..+..... ...+..+++|+.+++..+..... ....+..+++++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccc
Confidence 34555555555543221 122233455556665555543322 22345567777777776643222 223456788899
Q ss_pred EEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcCh-HHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 346 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITD-SGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 346 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
.++++.|.+....+..+..+++++.|++++|.+.. ..+..+..+++|+.|++++|++.+..+..+..+++|++|+|++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence 99999988877666677788999999999997443 34566788999999999999999998888999999999999999
Q ss_pred CCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCC-cccceeecccCCCCH
Q 010952 425 CNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL-KNLRSLTLESCKVTA 477 (497)
Q Consensus 425 ~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~~~ 477 (497)
+++...+..+.++++|+.|++++|++++..++.+..+ ++|+.|++++|+++-
T Consensus 529 -~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 529 -NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp -CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred -cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 8988878889999999999999999999888888887 689999999998864
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=4e-31 Score=248.32 Aligned_cols=285 Identities=28% Similarity=0.375 Sum_probs=187.6
Q ss_pred ccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCC
Q 010952 170 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 249 (497)
Q Consensus 170 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 249 (497)
+..+++|++|+++++.+++..+ +.++++|++|++++|.+... ..+..+++|++|++++|.+....+ +..+++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~ 135 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMY 135 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCC
T ss_pred hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCcee
Confidence 4445555555555555443322 45555555555555555442 235555566666666555544322 45556666
Q ss_pred EEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCC
Q 010952 250 VLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG 329 (497)
Q Consensus 250 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 329 (497)
.|++++|...... ..+..+++|+.|++++|.+..... +..+++|++|++++|.+..... +..+++|+.+++++|.
T Consensus 136 ~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 136 SLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp EEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCC
Confidence 6666655332211 125566666666666665544333 5566677777777766654322 5667777777777776
Q ss_pred CChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHh
Q 010952 330 ISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKH 409 (497)
Q Consensus 330 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 409 (497)
+..... +..+++|+.|++++|.++.... +..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+. ..
T Consensus 211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~ 282 (347)
T 4fmz_A 211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SV 282 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hh
Confidence 665433 5677788888888877776443 67788888888888877764 3467788888888888888776 34
Q ss_pred hhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCC
Q 010952 410 IKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 476 (497)
Q Consensus 410 ~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 476 (497)
+..+++|++|++++| .+++..+..+..+++|+.|++++|++++..+ +..+++|++|++++|+++
T Consensus 283 ~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 677889999999998 7888888888889999999999999887654 778899999999999875
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=1.3e-32 Score=275.06 Aligned_cols=389 Identities=16% Similarity=0.140 Sum_probs=280.5
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
.+++++|+++++.+.+..+..++.+++|++|++++| .+....+.+|..+++|++|++++|.. . .+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRL-Q-NISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCC-C-EECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcC-C-ccCcc--ccccCCE
Confidence 378999999999998766778999999999999998 78777788899999999999999984 4 34443 8999999
Q ss_pred EeccCcccccc-ccccccCCCCCCEEeccCCCCCCccccccccCCCCC--CEEEeecccc--CchhHHhhh---------
Q 010952 130 LDLERCTRIHG-GLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNL--KSLQISCSKV--TDSGIAYLK--------- 195 (497)
Q Consensus 130 L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~--------- 195 (497)
|++++|..... .+..++++++|++|+++++. +... .+..+++| ++|+++++.+ +...+..+.
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCc-cccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 99999754332 24689999999999999854 4433 34444455 9999988877 433333333
Q ss_pred -----------------cCCCCcEEEccCCCCC----hHHHHHhhCCCCCcEEEcCCCCCChhHhHhh---hcCCCCCEE
Q 010952 196 -----------------GLQKLTLLNLEGCPVT----AACLDSLSALGSLFYLNLNRCQLSDDGCEKF---SKIGSLKVL 251 (497)
Q Consensus 196 -----------------~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L 251 (497)
.+++|+.++++++... ......+..+++|+.+++.++.+.......+ ...++|+.|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 2346666777666421 1122334455555555554444332211110 112344444
Q ss_pred EccCCCCCh-------------------------------hHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEee
Q 010952 252 NLGFNEITD-------------------------------ECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLE 300 (497)
Q Consensus 252 ~l~~~~~~~-------------------------------~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 300 (497)
++++|.+.+ .....+....+|+.|+++++.+.... ....+++|++|+
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 359 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence 444443321 11111112367999999998775422 125788999999
Q ss_pred ccCcccchHHHHhhcCCCCCCEEeccCCCCCh--HHHHHhcCCCCCcEEEcCCCCCCH-hHHHHhcCCCCCcEEEecCCC
Q 010952 301 LSDTQVGSSGLRHLSGLTNLESINLSFTGISD--GSLRKLAGLSSLKSLNLDARQITD-TGLAALTSLTGLTHLDLFGAR 377 (497)
Q Consensus 301 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 377 (497)
+++|.+....+..+..+++|++|++++|.+.. ..+..+.++++|+.|++++|.++. .....+..+++|+.|++++|.
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 99999988777788899999999999999886 445668899999999999999886 333456788999999999999
Q ss_pred cChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccCh
Q 010952 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 453 (497)
Q Consensus 378 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~ 453 (497)
+++..+..+. ++|+.|++++|.++.+ +..+..+++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 9875544332 7999999999999966 444448899999999999 7886444448899999999999999874
No 33
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.98 E-value=1e-29 Score=256.77 Aligned_cols=425 Identities=22% Similarity=0.223 Sum_probs=308.8
Q ss_pred HHHhcCCceeEEEeeCCCCCh---------------HHHHHhcCCCCcCEEEccCccccChhHHHHhh-CCCCCCEEEcC
Q 010952 45 VIASQGSSLLSVDLSGSDVTD---------------SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLR-GLSNLTSLSFR 108 (497)
Q Consensus 45 ~~~~~~~~l~~L~l~~~~~~~---------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~ 108 (497)
.+...++++++|+++++.... ........+++|++|++++| .+.+..+..+. .+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCC
Confidence 345568999999999854211 11223467899999999998 57777777776 79999999999
Q ss_pred CCCCCChH-HHHHHhCCCCCCEEeccCcccccccc----ccccCCCCCCEEeccCCC-CCCccccccc-cCCCCCCEEEe
Q 010952 109 RNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGGL----VNLKGLMKLESLNIKWCN-CITDSDMKPL-SGLTNLKSLQI 181 (497)
Q Consensus 109 ~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~-~~~~~~~~~l-~~l~~L~~L~l 181 (497)
+|..+... .+....++++|++|++++|....... .....+++|++|++++|. .+.......+ ..+++|+.|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 99545554 34445589999999999986322222 223477899999999875 2332223332 46799999999
Q ss_pred eccccCchhHHhhhcCCCCcEEEccCCCC--C----hHHHHHhhCCCCCcEE-EcCCCCCChhHhHhhhcCCCCCEEEcc
Q 010952 182 SCSKVTDSGIAYLKGLQKLTLLNLEGCPV--T----AACLDSLSALGSLFYL-NLNRCQLSDDGCEKFSKIGSLKVLNLG 254 (497)
Q Consensus 182 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~----~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~ 254 (497)
.++......+..+..+++|+.|.+..+.. . ...+..+.++++|+.+ .+.+.. ....+..+..+++|+.|+++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECT
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEcc
Confidence 98743334667778899999999876632 1 2245577899999999 444332 12334444578999999999
Q ss_pred CCCCChhHHH-HhhCCCCcCEEeCCCCCCCHhHHHHH-hCCCCCCEeecc---------CcccchHHHHhhc-CCCCCCE
Q 010952 255 FNEITDECLV-HLKGLTNLESLNLDSCGIGDEGLVNL-TGLCNLKCLELS---------DTQVGSSGLRHLS-GLTNLES 322 (497)
Q Consensus 255 ~~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~L~l~---------~~~~~~~~~~~l~-~~~~L~~ 322 (497)
+|.+...... .+..+++|+.|++.+| +.+.....+ ..+++|++|++. .+.++......+. .+++|++
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 9987754433 3568899999999987 444433333 358999999983 3455555444443 5899999
Q ss_pred EeccCCCCChHHHHHhc-CCCCCcEEEcC--C----CCCC----HhHH-HHhcCCCCCcEEEecCCCcChHHHHHhhc-c
Q 010952 323 INLSFTGISDGSLRKLA-GLSSLKSLNLD--A----RQIT----DTGL-AALTSLTGLTHLDLFGARITDSGAAYLRN-F 389 (497)
Q Consensus 323 L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~----~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~ 389 (497)
|.+..+.+++.....+. .+++|+.|++. + +.++ +.+. ..+..+++|+.|++++ .+++..+..+.. +
T Consensus 377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA 455 (594)
T ss_dssp EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence 98888888887776665 58999999998 3 4566 3333 2356789999999987 788777777655 8
Q ss_pred CCCCeeeecCCCCChhhHHhh-hhcCCCCeecccCCCCCChhHHHH-hhcCCCCcEEEeeCCccChhHHHhh-cCCcccc
Q 010952 390 KNLRSLEICGGGLTDAGVKHI-KDLSSLTLLNLSQNCNLTDKTLEL-ISGLTGLVSLNVSNSRITSAGLRHL-KPLKNLR 466 (497)
Q Consensus 390 ~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~ 466 (497)
++|+.|++++|.+++.+...+ ..+++|++|+|++| .+++..+.. ...+++|+.|++++|+++......+ ..+|+|+
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 999999999999988877766 66899999999999 677766653 4468999999999999987777766 5678887
Q ss_pred eeecccCC
Q 010952 467 SLTLESCK 474 (497)
Q Consensus 467 ~L~l~~~~ 474 (497)
...+..+.
T Consensus 535 i~~~~~~~ 542 (594)
T 2p1m_B 535 VEVIDERG 542 (594)
T ss_dssp EEEECSSS
T ss_pred EEEecCCC
Confidence 77776653
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.2e-32 Score=270.01 Aligned_cols=302 Identities=20% Similarity=0.226 Sum_probs=177.9
Q ss_pred CCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEE
Q 010952 149 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228 (497)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 228 (497)
+++++|+++++ .+....+..+..+++|++|+++++.+....+..+.++++|++|++++|.+....+..+.++++|++|+
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 46777777763 34444455666777777777777776666666667777777777777766654444456667777777
Q ss_pred cCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccch
Q 010952 229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 308 (497)
Q Consensus 229 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 308 (497)
+++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 77776666555566666677777777666655444455666666666666666655555556666666666666666555
Q ss_pred HHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhc
Q 010952 309 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 388 (497)
Q Consensus 309 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 388 (497)
.....+..+++|++|++++|......+.......+|+.|++++|.++......+..+++|+.|++++|.+....+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 44445555666666666665433322222223345555555555555544444555555555555555555444444455
Q ss_pred cCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 389 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 389 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
+++|+.|++++|.+.+..+..+..+++|+.|+|++| .++...+..+..+++|+.|++++|++.
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 555555555555555554455555555555555555 455444444455555555555555543
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.2e-30 Score=242.13 Aligned_cols=305 Identities=30% Similarity=0.363 Sum_probs=167.5
Q ss_pred CCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCC
Q 010952 98 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 177 (497)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 177 (497)
.+++|++|+++++.. ... +.+..+++|++|++++|. +...+. +..+++|++|++++|. +.+ .+.+..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i-~~~--~~~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~--~~~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKV-ASI--QGIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITD--ISALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCC-CCC--TTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCC--CGGGTTCTTCS
T ss_pred hcccccEEEEeCCcc-ccc--hhhhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccC--chHHcCCCcCC
Confidence 456677777777653 221 236667777777777653 333333 6666666666666643 222 23455666666
Q ss_pred EEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCC
Q 010952 178 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 257 (497)
Q Consensus 178 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 257 (497)
+|+++++.+..... +..+++|++|++++|...... ..+..+++|++|++++|.+....+ ++.+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 66666665554322 555556666666555332211 224555555555555555443222 4444555555555544
Q ss_pred CChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHH
Q 010952 258 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 337 (497)
Q Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 337 (497)
+.. ... +..+++|+.+++++|.+..... +..+++|++|++++|.+.....
T Consensus 189 l~~------------------------~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IED------------------------ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCC------------------------CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred ccc------------------------ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 443 222 3344455555555544433221 4445555555555555543322
Q ss_pred hcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCC
Q 010952 338 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 417 (497)
Q Consensus 338 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 417 (497)
+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 45556666666666655543 3455666666666666666553 2355667777777777777766666666677777
Q ss_pred eecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 418 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 418 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
+|++++| .+++..+ +..+++|+.|++++|+++
T Consensus 315 ~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQN-HITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSS-SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCC-ccccccC--hhhhhccceeehhhhccc
Confidence 7777777 5665444 666777777777777654
No 36
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=3e-30 Score=260.45 Aligned_cols=425 Identities=19% Similarity=0.182 Sum_probs=303.1
Q ss_pred HHHHhcCCceeEEEeeCCCC--------------ChHHHH-HhcCCCCcCEEEccCccccChhHHHHhhC-CCC-CCEEE
Q 010952 44 DVIASQGSSLLSVDLSGSDV--------------TDSGLI-HLKDCSNLQSLDFNFCIQISDGGLEHLRG-LSN-LTSLS 106 (497)
Q Consensus 44 ~~~~~~~~~l~~L~l~~~~~--------------~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~-L~~L~ 106 (497)
..+...++++++|+++++.. ...... ....+++|++|++++| .+.+..+..+.. ++. |++|+
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEE
Confidence 34556678899999976321 111222 2348899999999988 677766777765 444 99999
Q ss_pred cCCCCCCChH-HHHHHhCCCCCCEEeccCcccccc----ccccccCCCCCCEEeccCCCCC--C-ccccccccCCCCCCE
Q 010952 107 FRRNNAITAQ-GMKAFAGLINLVKLDLERCTRIHG----GLVNLKGLMKLESLNIKWCNCI--T-DSDMKPLSGLTNLKS 178 (497)
Q Consensus 107 l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~--~-~~~~~~l~~l~~L~~ 178 (497)
+++|..+... .+....++++|++|++++|..... .......+++|++|+++++... . ......+..+++|+.
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 9988644433 334445889999999998753222 1223467889999999875542 1 122234457899999
Q ss_pred EEeeccccCchhHHhhhcCCCCcEEEccCCCCC---hHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC
Q 010952 179 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT---AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 255 (497)
Q Consensus 179 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 255 (497)
|++.++.+.. .+..+.++++|+.|.++..... ......+..+++|+.++++++.. ...+..+..+++|+.|++++
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~ 302 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLY 302 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETT
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCC
Confidence 9999888775 5577888999999999754222 11233456778999999987543 33455667789999999999
Q ss_pred CCCChhHH-HHhhCCCCcCEEeCCCCCCCHhHHH-HHhCCCCCCEeeccC-----------cccchHHHHh-hcCCCCCC
Q 010952 256 NEITDECL-VHLKGLTNLESLNLDSCGIGDEGLV-NLTGLCNLKCLELSD-----------TQVGSSGLRH-LSGLTNLE 321 (497)
Q Consensus 256 ~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~-----------~~~~~~~~~~-l~~~~~L~ 321 (497)
|.+..... ..+..+++|+.|++. +.+.+.... ....+++|++|++.+ +.++...... ...+++|+
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 98775444 346789999999998 434443333 335688999999983 4555543333 45689999
Q ss_pred EEeccCCCCChHHHHHhcC-CCCCcEEEcC----CCCCCHh-----HHHHhcCCCCCcEEEecCCC--cChHHHHHhh-c
Q 010952 322 SINLSFTGISDGSLRKLAG-LSSLKSLNLD----ARQITDT-----GLAALTSLTGLTHLDLFGAR--ITDSGAAYLR-N 388 (497)
Q Consensus 322 ~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~-~ 388 (497)
+|++..+.+++..+..+.. +++|+.|++. .+.+++. ....+..+++|+.|+++.|. +++.....+. .
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence 9999888888887777765 8999999996 5566642 23345578999999998765 7776666664 4
Q ss_pred cCCCCeeeecCCCCChhhHHh-hhhcCCCCeecccCCCCCChhHHH-HhhcCCCCcEEEeeCCccChhHHHhh-cCCccc
Q 010952 389 FKNLRSLEICGGGLTDAGVKH-IKDLSSLTLLNLSQNCNLTDKTLE-LISGLTGLVSLNVSNSRITSAGLRHL-KPLKNL 465 (497)
Q Consensus 389 ~~~L~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L 465 (497)
+++|+.|++++|++++.+... +..+++|++|+|++| .+++.... ....+++|+.|++++|++++.....+ ..+|.+
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW 540 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTE
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCc
Confidence 899999999999998865544 467899999999999 58776544 44579999999999999988766555 467877
Q ss_pred ceeecccC
Q 010952 466 RSLTLESC 473 (497)
Q Consensus 466 ~~L~l~~~ 473 (497)
+...+..+
T Consensus 541 ~~~~~~~~ 548 (592)
T 3ogk_B 541 NIELIPSR 548 (592)
T ss_dssp EEEEECCC
T ss_pred EEEEecCc
Confidence 77776654
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=8.5e-32 Score=264.09 Aligned_cols=320 Identities=20% Similarity=0.190 Sum_probs=250.0
Q ss_pred CEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEee
Q 010952 103 TSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQIS 182 (497)
Q Consensus 103 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 182 (497)
+.++.++... . .+|..+ .+++++|++++|......+..+..+++|++|++++| .+....+..+..+++|++|+++
T Consensus 14 ~~v~c~~~~l-~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRF-V-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCC-S-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCc-C-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECC
Confidence 4566665542 2 123222 358889999886533334567888899999999885 4555566778888899999998
Q ss_pred ccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhH
Q 010952 183 CSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC 262 (497)
Q Consensus 183 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 262 (497)
+|.++......+.++++|++|++++|.+....+..+..+++|++|++++|.+....+..|+.+++|+.|++++|.+....
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 88888766667788889999999998887766777888889999999988887777777888889999999988888766
Q ss_pred HHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCC
Q 010952 263 LVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS 342 (497)
Q Consensus 263 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 342 (497)
+..+..+++|+.|++.++.+.......+..+++|++|+++++......+.......+|++|++++|.+.......+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 67788888999999988887766666677788899999988765544444444455899999998888776667788888
Q ss_pred CCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeeccc
Q 010952 343 SLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLS 422 (497)
Q Consensus 343 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 422 (497)
+|+.|++++|.++......+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..+++|++|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 99999999888887666667788899999999998888777778888899999999998888777777788889999998
Q ss_pred CCCCCC
Q 010952 423 QNCNLT 428 (497)
Q Consensus 423 ~~~~l~ 428 (497)
+| .+.
T Consensus 329 ~N-~l~ 333 (477)
T 2id5_A 329 SN-PLA 333 (477)
T ss_dssp SS-CEE
T ss_pred CC-Ccc
Confidence 88 444
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5.6e-31 Score=251.17 Aligned_cols=316 Identities=20% Similarity=0.185 Sum_probs=167.6
Q ss_pred CCCCCEEeccCccccccccc-cccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcE
Q 010952 124 LINLVKLDLERCTRIHGGLV-NLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 202 (497)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 202 (497)
++++++++++++. +...+. .+..+++|++|++++|. +.+..+..+..+++|++|+++++.+....+..+.++++|++
T Consensus 44 l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4566666666543 332322 24555666666665532 33333345555556666666555555544455555555555
Q ss_pred EEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCC
Q 010952 203 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 282 (497)
Q Consensus 203 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 282 (497)
|++++|.+....+..+..+++|++|++++|.+....+..++.+++|+.|++++|.+... .+..
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~-------------- 184 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL-------------- 184 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGG--------------
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccc--------------
Confidence 55555555443222334555555555555555444444445555555555555544432 1233
Q ss_pred CHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHh
Q 010952 283 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 362 (497)
Q Consensus 283 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 362 (497)
+++|+.+++++|.+.. +...++|+.|++++|.+.... ....++|+.|++++|.++.. ..+
T Consensus 185 ----------l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 185 ----------IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVR---GPVNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp ----------CTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEE---CCCCSSCCEEECCSSCCCCC--GGG
T ss_pred ----------ccccceeecccccccc-----cCCCCcceEEECCCCeeeecc---ccccccccEEECCCCCCccc--HHH
Confidence 4444444444444322 122344555555555444321 11234566666666655543 344
Q ss_pred cCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCc
Q 010952 363 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 442 (497)
Q Consensus 363 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 442 (497)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. +..+..+++|++|++++| .++. .+..+..+++|+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~l~~L~ 321 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLH-VERNQPQFDRLE 321 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS-CCCC-CGGGHHHHTTCS
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC-ccee-cCccccccCcCC
Confidence 5566666666666666655555556666666666666666554 223344566666666666 5553 233455566666
Q ss_pred EEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHh
Q 010952 443 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQ 484 (497)
Q Consensus 443 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 484 (497)
.|++++|+++... +..+++|+.|++++|+++......+.
T Consensus 322 ~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~ 360 (390)
T 3o6n_A 322 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALF 360 (390)
T ss_dssp EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred EEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHHH
Confidence 7777666665532 45566677777777777666665554
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=6.5e-31 Score=267.91 Aligned_cols=413 Identities=21% Similarity=0.245 Sum_probs=273.8
Q ss_pred CCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCcccccccc-ccccCCCCCCE
Q 010952 75 SNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGL-VNLKGLMKLES 153 (497)
Q Consensus 75 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~ 153 (497)
+++++|++++| .++...+.+|.++++|++|++++|. +....+.+|.++++|++|++++|. +...+ ..+.++++|++
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence 38999999998 7887777889999999999999998 566667789999999999999975 54444 56899999999
Q ss_pred EeccCCCCCCccccccccCCCCCCEEEeeccccCch-hHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCC----CcEEE
Q 010952 154 LNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGS----LFYLN 228 (497)
Q Consensus 154 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~----L~~L~ 228 (497)
|++++|. +.......++++++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+..+.+ ...++
T Consensus 129 L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 129 LVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 9999964 5555556789999999999999998753 4567889999999999999987755555544322 33566
Q ss_pred cCCCCCChhHh------------------------HhhhcCCCCCEEEccCCCCC------hh-----------------
Q 010952 229 LNRCQLSDDGC------------------------EKFSKIGSLKVLNLGFNEIT------DE----------------- 261 (497)
Q Consensus 229 l~~~~~~~~~~------------------------~~l~~l~~L~~L~l~~~~~~------~~----------------- 261 (497)
++.+.+....+ ..+..+..++...+..+... ..
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 66655443222 12223333333322110000 00
Q ss_pred ----------HHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHH-------------------HH
Q 010952 262 ----------CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-------------------LR 312 (497)
Q Consensus 262 ----------~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-------------------~~ 312 (497)
....+....+++.+.+..+.+... ..+.....++.|++.++.+.... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 000000111222222221111000 01122233444444333221110 00
Q ss_pred hhcCCCCCCEEeccCCCCChH--HHH-----------------------HhcCCCCCcEEEcCCCCCCHh-HHHHhcCCC
Q 010952 313 HLSGLTNLESINLSFTGISDG--SLR-----------------------KLAGLSSLKSLNLDARQITDT-GLAALTSLT 366 (497)
Q Consensus 313 ~l~~~~~L~~L~l~~~~~~~~--~~~-----------------------~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~ 366 (497)
....+++|+.++++.|.+... .+. .+..+++|+.+++..+..... ....+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 112345566666655544211 111 223455666666665433222 123455678
Q ss_pred CCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCC-hhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEE
Q 010952 367 GLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLT-DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLN 445 (497)
Q Consensus 367 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~ 445 (497)
+++.++++.|.+....+..+..+++|+.|++++|.+. ...+..+..+++|++|+|++| .+++..+..+.++++|++|+
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEE
Confidence 8889999998887776777788999999999999744 445567788999999999999 89998888999999999999
Q ss_pred eeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCC-CCCccCCC
Q 010952 446 VSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDL-PNLVSFRP 496 (497)
Q Consensus 446 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-p~L~~l~~ 496 (497)
+++|.+++..+..+..+++|+.|++++|.++......+. .+ ++|+.|+.
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L 574 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNL 574 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEEC
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEe
Confidence 999999998888899999999999999999887666664 44 56776643
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-29 Score=241.40 Aligned_cols=314 Identities=17% Similarity=0.182 Sum_probs=216.5
Q ss_pred CCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCC
Q 010952 98 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 177 (497)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 177 (497)
.++++++|+++++. +....+..+..+++|++|++++|......+..+..+++|++|++++|. +....+..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCC
Confidence 36899999999987 455556678999999999999975443344578999999999999965 5556667789999999
Q ss_pred EEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCC
Q 010952 178 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 257 (497)
Q Consensus 178 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 257 (497)
+|+++++.+.......+.++++|++|++++|.+....+..+..+++|++|++++|.+... .++.+++|+.+++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999999976666678999999999999999887677789999999999999998764 35678999999999998
Q ss_pred CChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHH
Q 010952 258 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 337 (497)
Q Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 337 (497)
+.. +...++|+.|++++|.+..... ...++|+.|++++|.+... ..+..+++|++|++++|.+....+.
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~- 266 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH- 266 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG-
T ss_pred ccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh-
Confidence 764 2345678888888877654321 1234566666666655432 2344455555555555544443333
Q ss_pred hcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCC
Q 010952 338 LAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLT 417 (497)
Q Consensus 338 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 417 (497)
.+..+++|+.|++++|.++.. +..+..+++|+.|++++|.+... +..+..+++|+
T Consensus 267 -----------------------~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~ 321 (390)
T 3o6n_A 267 -----------------------PFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLE 321 (390)
T ss_dssp -----------------------GGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCS
T ss_pred -----------------------HccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCC
Confidence 444445555555555544432 12223455666666666665544 33345556666
Q ss_pred eecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHH
Q 010952 418 LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 456 (497)
Q Consensus 418 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 456 (497)
+|++++| .++... +..+++|+.|++++|++.....
T Consensus 322 ~L~L~~N-~i~~~~---~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 322 NLYLDHN-SIVTLK---LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp EEECCSS-CCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred EEECCCC-ccceeC---chhhccCCEEEcCCCCccchhH
Confidence 6666666 454432 4556667777777776665433
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=4.1e-30 Score=258.36 Aligned_cols=315 Identities=20% Similarity=0.182 Sum_probs=161.1
Q ss_pred CCCCCEEeccCcccccccc-ccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcE
Q 010952 124 LINLVKLDLERCTRIHGGL-VNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTL 202 (497)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 202 (497)
+.+++.++++++. +...+ ..+..+++|++|++++|. +.+..+..+..+++|++|++++|.++...+..+.++++|++
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4566677766643 33332 234566666666666643 44444445666666666666666666655555666666666
Q ss_pred EEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCC
Q 010952 203 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 282 (497)
Q Consensus 203 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 282 (497)
|++++|.+....+..++.+++|++|++++|.+....+..++.+++|+.|++++|.+.... +..+++|+.+++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 666666665433334456666666666666665555555566666666666666555321 33445555666555544
Q ss_pred CHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHh
Q 010952 283 GDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAAL 362 (497)
Q Consensus 283 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 362 (497)
.. +...++|+.|++++|.+..... ...++|+.|++++|.+ +.. ..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l------------------------~~~--~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNL------------------------TDT--AWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCC------------------------CCC--GGG
T ss_pred cc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCC------------------------CCC--hhh
Confidence 32 1233445555555554433211 1123455555555544 431 233
Q ss_pred cCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCc
Q 010952 363 TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLV 442 (497)
Q Consensus 363 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 442 (497)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. +..+..+++|+.|+|++| .++. +|..+..+++|+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N-~l~~-i~~~~~~l~~L~ 327 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN-HLLH-VERNQPQFDRLE 327 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSS-CCCC-CGGGHHHHTTCS
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCC-CCCc-cCcccccCCCCC
Confidence 4444555555555544444444444445555555555544443 222233455555555555 3442 233344445555
Q ss_pred EEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHH
Q 010952 443 SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRL 483 (497)
Q Consensus 443 ~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 483 (497)
.|++++|+++... +..+++|+.|++++|+++......+
T Consensus 328 ~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 328 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred EEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHH
Confidence 5555555544321 3444555555555555554444433
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.5e-29 Score=243.04 Aligned_cols=346 Identities=20% Similarity=0.136 Sum_probs=238.5
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
+++|++|+++++.+++. + .++.+++|++|++++| .+.+. .++.+++|++|++++|.. ... + ++++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l-~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKL-TNL-D--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCC-SCC-C--CTTCTTCCE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCC-cee-e--cCCCCcCCE
Confidence 67999999999888753 3 6888999999999998 56653 278889999999999884 332 2 788999999
Q ss_pred EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952 130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 209 (497)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 209 (497)
|++++|. +...+ ++.+++|++|++++|. +... .+..+++|++|++++|...... .+..+++|++|++++|.
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCCc-ccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 9999864 44432 7888999999999865 3332 3778889999999888433222 46778889999999998
Q ss_pred CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952 210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 289 (497)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 289 (497)
+.+. + +..+++|+.|++++|.+... .++.+++|+.|++++|.+.+. + +..+++|+.|++++|.+....
T Consensus 182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---
Confidence 8773 2 77888999999999888764 367788999999999888863 2 677888999999888776643
Q ss_pred HhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH--------HH
Q 010952 290 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL--------AA 361 (497)
Q Consensus 290 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------~~ 361 (497)
...+++|+.|+++.+ +|+.+++++|......+ ...+++|+.|++++|......+ -.
T Consensus 250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 345666666665543 23334444443222111 2334455555554443221110 01
Q ss_pred hcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCC
Q 010952 362 LTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGL 441 (497)
Q Consensus 362 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L 441 (497)
+..+++|+.|++++|++++. .+..+++|+.|++++|++.+. +.|..|.+++| .+... ..+..|
T Consensus 314 l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n-~l~g~-----~~~~~l 376 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNN-NFEAE-----GQTITM 376 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGT-SEEEE-----EEEEEC
T ss_pred hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------cccccccccCC-cEEec-----ceeeec
Confidence 23446777777777777764 266777778888877777752 45666667666 45442 345667
Q ss_pred cEEEeeCCccChhHHHhh
Q 010952 442 VSLNVSNSRITSAGLRHL 459 (497)
Q Consensus 442 ~~L~l~~~~l~~~~~~~l 459 (497)
..+++++|.+++.++..+
T Consensus 377 ~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCBCCBTTBEEEECCTTC
T ss_pred CccccccCcEEEEcChhH
Confidence 778888888877665443
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.6e-29 Score=242.92 Aligned_cols=321 Identities=18% Similarity=0.176 Sum_probs=175.1
Q ss_pred cCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCC
Q 010952 49 QGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLV 128 (497)
Q Consensus 49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 128 (497)
.+++|++|+++++.+++. .++.+++|++|++++| .+.+. .++.+++|++|++++|.. ... + ++++++|+
T Consensus 62 ~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~~L~L~~N~l-~~l-~--~~~l~~L~ 130 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLTYLNCDTNKL-TKL-D--VSQNPLLT 130 (457)
T ss_dssp GCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCCEEECCSSCC-SCC-C--CTTCTTCC
T ss_pred ccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCCEEECCCCcC-Cee-c--CCCCCcCC
Confidence 456677777777666542 2566667777777666 44442 256666777777776653 222 2 56666777
Q ss_pred EEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCC
Q 010952 129 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGC 208 (497)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 208 (497)
+|++++|. +... .+..+++|++|++++|..+... .+..+++|++|+++++.++... +..+++|+.|++++|
T Consensus 131 ~L~l~~N~-l~~l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 131 YLNCARNT-LTEI--DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN 201 (457)
T ss_dssp EEECTTSC-CSCC--CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSS
T ss_pred EEECCCCc-ccee--ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCC
Confidence 77776653 3332 2566666777777665444322 3556666777777666666532 556666777777766
Q ss_pred CCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCC-----
Q 010952 209 PVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIG----- 283 (497)
Q Consensus 209 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~----- 283 (497)
.+... .++.+++|+.|++++|.+.+. + ++.+++|+.|++++|.+.... +..+++|+.++++.+.+.
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~ 272 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLT 272 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCT
T ss_pred cCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECC
Confidence 66553 356666777777777666652 2 556666777777766665432 334455555544433211
Q ss_pred -----HhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhH
Q 010952 284 -----DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTG 358 (497)
Q Consensus 284 -----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 358 (497)
...+ +..+++|+.|++++|......+ ...++|+.+++ .++++|+.|++++|.++..
T Consensus 273 ~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~---~~~~~L~~L~l-------------~~~~~L~~L~L~~N~l~~l- 333 (457)
T 3bz5_A 273 HNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD---CQAAGITELDL-------------SQNPKLVYLYLNNTELTEL- 333 (457)
T ss_dssp TCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE---CTTCCCSCCCC-------------TTCTTCCEEECTTCCCSCC-
T ss_pred CCccCCccc--ccccccCCEEECCCCcccceec---cCCCcceEech-------------hhcccCCEEECCCCccccc-
Confidence 1000 1123333333333332211111 01122222222 2335666666666666653
Q ss_pred HHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHH
Q 010952 359 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 433 (497)
Q Consensus 359 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 433 (497)
.+..+++|+.|++++|++.+ ++.|..|++++|.+.+. +.+..|..+++++| +++..+|.
T Consensus 334 --~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N-~l~g~ip~ 392 (457)
T 3bz5_A 334 --DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN-SLTIAVSP 392 (457)
T ss_dssp --CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT-BEEEECCT
T ss_pred --ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC-cEEEEcCh
Confidence 25566667777777766654 34555556666655544 23455666666666 55554443
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.1e-29 Score=245.26 Aligned_cols=371 Identities=15% Similarity=0.082 Sum_probs=233.9
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCC-------------CCEEEcCCCCCCChH
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSN-------------LTSLSFRRNNAITAQ 116 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~ 116 (497)
..+|++|+++++.+ +..|..++++++|++|++++| .+.+..+..++.+++ +++|++++|.. ..
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~- 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SS- 85 (454)
T ss_dssp -------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SC-
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-cc-
Confidence 46899999999988 678888999999999999987 555555666666554 59999999874 32
Q ss_pred HHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCC-CCCCEEEeeccccCchhHHhhh
Q 010952 117 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGL-TNLKSLQISCSKVTDSGIAYLK 195 (497)
Q Consensus 117 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~ 195 (497)
.|. -.++|++|++++|. +...+. .+++|++|++++|. +.. +... ++|++|++++|.++. .+ .+.
T Consensus 86 lp~---~~~~L~~L~l~~n~-l~~lp~---~~~~L~~L~l~~n~-l~~-----l~~~~~~L~~L~L~~n~l~~-lp-~~~ 150 (454)
T 1jl5_A 86 LPE---LPPHLESLVASCNS-LTELPE---LPQSLKSLLVDNNN-LKA-----LSDLPPLLEYLGVSNNQLEK-LP-ELQ 150 (454)
T ss_dssp CCS---CCTTCSEEECCSSC-CSSCCC---CCTTCCEEECCSSC-CSC-----CCSCCTTCCEEECCSSCCSS-CC-CCT
T ss_pred CCC---CcCCCCEEEccCCc-CCcccc---ccCCCcEEECCCCc-cCc-----ccCCCCCCCEEECcCCCCCC-Cc-ccC
Confidence 121 24689999998864 444433 24789999998854 322 2222 689999999888886 33 588
Q ss_pred cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEE
Q 010952 196 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 275 (497)
Q Consensus 196 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 275 (497)
++++|++|++++|.+.+ .+. ...+|++|++++|.+... + .++.+++|+.|++++|.+.... ...++|+.|
T Consensus 151 ~l~~L~~L~l~~N~l~~-lp~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L 220 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP----DLPLSLESI 220 (454)
T ss_dssp TCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC----CCCTTCCEE
T ss_pred CCCCCCEEECCCCcCcc-cCC---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC----CCcCcccEE
Confidence 88999999999998765 232 235899999999888763 3 5788899999999988877421 123588999
Q ss_pred eCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCC
Q 010952 276 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 355 (497)
Q Consensus 276 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 355 (497)
++++|.+.... .+..+++|++|++++|.+.... ...++|++|++++|.+.... ...++|+.|++++|.++
T Consensus 221 ~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~----~~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 221 VAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFS 290 (454)
T ss_dssp ECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ECcCCcCCccc--ccCCCCCCCEEECCCCcCCccc----ccccccCEEECCCCcccccC----cccCcCCEEECcCCccC
Confidence 99988776432 3677888999999888776421 13478899999888776421 12478889999888877
Q ss_pred HhHHHHhcCCCCCcEEEecCCCcChHHHHHhhcc-CCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHH
Q 010952 356 DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLEL 434 (497)
Q Consensus 356 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 434 (497)
... ...++|+.|++++|.+++. ... ++|+.|++++|.+.+.. . .+++|++|++++| .++.. +.
T Consensus 291 ~l~----~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp-~---~~~~L~~L~L~~N-~l~~l-p~- 354 (454)
T 1jl5_A 291 GLS----ELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELP-A---LPPRLERLIASFN-HLAEV-PE- 354 (454)
T ss_dssp EES----CCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSS-CCSCC-CC-
T ss_pred ccc----CcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccccc-c---cCCcCCEEECCCC-ccccc-cc-
Confidence 621 1236888888888887752 223 58888888888887642 2 2578888888888 66642 22
Q ss_pred hhcCCCCcEEEeeCCccCh--hHHHhhcCC-------------cccceeecccCCCCH
Q 010952 435 ISGLTGLVSLNVSNSRITS--AGLRHLKPL-------------KNLRSLTLESCKVTA 477 (497)
Q Consensus 435 l~~~~~L~~L~l~~~~l~~--~~~~~l~~~-------------~~L~~L~l~~~~~~~ 477 (497)
.+++|++|++++|++++ .++..+..+ ++|+.|++++|+++.
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 46788888888888877 455555544 788888888888775
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-28 Score=247.92 Aligned_cols=312 Identities=16% Similarity=0.164 Sum_probs=250.1
Q ss_pred CCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCE
Q 010952 99 LSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKS 178 (497)
Q Consensus 99 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 178 (497)
+.+++.|+++++. +....+..++++++|++|++++|......+..+..+++|++|++++|. +....+..++.+++|++
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCE
Confidence 6789999999987 455666778999999999999976444344588999999999999965 66666677899999999
Q ss_pred EEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCC
Q 010952 179 LQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 258 (497)
Q Consensus 179 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 258 (497)
|++++|.++...+..+.++++|++|++++|.+.+..+..++.+++|+.|++++|.+.... ++.+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 999999999776677899999999999999998877778999999999999999987653 56689999999999988
Q ss_pred ChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHh
Q 010952 259 TDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKL 338 (497)
Q Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 338 (497)
.. +...++|+.|++++|.+..... ...++|+.|++++|.+... ..+..+++|+.|++++|.+....+..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----ccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 74 3456789999999998865432 1346899999999988763 567788999999999998887777778
Q ss_pred cCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCe
Q 010952 339 AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 418 (497)
Q Consensus 339 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 418 (497)
..+++|+.|++++|.++.. +..+..+++|+.|++++|.+... |..+..+++|+.|++++|.+.... +..+++|+.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp TTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred cCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 8888999999988888764 23334578888888888877753 444566778888888888777652 445677777
Q ss_pred ecccCCCCCChhH
Q 010952 419 LNLSQNCNLTDKT 431 (497)
Q Consensus 419 L~l~~~~~l~~~~ 431 (497)
|++++| .+....
T Consensus 350 L~l~~N-~~~~~~ 361 (597)
T 3oja_B 350 LTLSHN-DWDCNS 361 (597)
T ss_dssp EECCSS-CEEHHH
T ss_pred EEeeCC-CCCChh
Confidence 777777 555443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.8e-27 Score=221.60 Aligned_cols=289 Identities=20% Similarity=0.187 Sum_probs=165.7
Q ss_pred CCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 010952 150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 229 (497)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 229 (497)
+++.++++++. +.. .+..+ .++++.|+++++.++...+..+.++++|++|++++|.+....+..++.+++|++|++
T Consensus 32 ~l~~l~~~~~~-l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLG-LEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSC-CCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCC-ccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 57777777633 221 22222 256777777777777665556677777777777777766655566666777777777
Q ss_pred CCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH--hHHHHHhCCCCCCEeeccCcccc
Q 010952 230 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD--EGLVNLTGLCNLKCLELSDTQVG 307 (497)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~~~~~ 307 (497)
++|.+..... .+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|++|++
T Consensus 108 s~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l------ 178 (330)
T 1xku_A 108 SKNQLKELPE-KM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI------ 178 (330)
T ss_dssp CSSCCSBCCS-SC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC------
T ss_pred CCCcCCccCh-hh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC------
Confidence 7766553221 11 1456666666665555444445555555666555554432 12233344444444444
Q ss_pred hHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhh
Q 010952 308 SSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLR 387 (497)
Q Consensus 308 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 387 (497)
++|.+..... . -.++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+.
T Consensus 179 ------------------~~n~l~~l~~-~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 179 ------------------ADTNITTIPQ-G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp ------------------CSSCCCSCCS-S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred ------------------CCCccccCCc-c--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 4444332110 0 124566666666655554445555666666666666666655444556
Q ss_pred ccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhh------cCCCCcEEEeeCCccCh--hHHHhh
Q 010952 388 NFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS------GLTGLVSLNVSNSRITS--AGLRHL 459 (497)
Q Consensus 388 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~------~~~~L~~L~l~~~~l~~--~~~~~l 459 (497)
.+++|+.|++++|.++.. +..+..+++|++|++++| .++...+..+. ..+.++.|++++|++.. ..+..+
T Consensus 238 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 238 NTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp GSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 666666666666666643 344556667777777776 56554444443 23677888888887654 344567
Q ss_pred cCCcccceeecccCC
Q 010952 460 KPLKNLRSLTLESCK 474 (497)
Q Consensus 460 ~~~~~L~~L~l~~~~ 474 (497)
..+++++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 778888888888763
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.2e-27 Score=231.13 Aligned_cols=372 Identities=17% Similarity=0.070 Sum_probs=186.8
Q ss_pred cCCceeEEEeeCCCCChHHHHHhcCCCC-------------cCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCCh
Q 010952 49 QGSSLLSVDLSGSDVTDSGLIHLKDCSN-------------LQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITA 115 (497)
Q Consensus 49 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~-------------L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 115 (497)
++++|++|+++++.+.+..|..++.+.+ +++|++++| .+.+.. . -.++|++|++++|.. ..
T Consensus 32 ~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp-~---~~~~L~~L~l~~n~l-~~ 105 (454)
T 1jl5_A 32 NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLP-E---LPPHLESLVASCNSL-TE 105 (454)
T ss_dssp --CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCC-S---CCTTCSEEECCSSCC-SS
T ss_pred cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCC-C---CcCCCCEEEccCCcC-Cc
Confidence 4566666666666555455555555544 366666666 343311 1 125677777776653 22
Q ss_pred HHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhh
Q 010952 116 QGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLK 195 (497)
Q Consensus 116 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 195 (497)
+|. .+++|++|++++|. +...+.. .++|++|++++|. +.. . +.+..+++|++|++++|.++.. +.
T Consensus 106 -lp~---~~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~-l~~-l-p~~~~l~~L~~L~l~~N~l~~l-p~--- 170 (454)
T 1jl5_A 106 -LPE---LPQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQ-LEK-L-PELQNSSFLKIIDVDNNSLKKL-PD--- 170 (454)
T ss_dssp -CCC---CCTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSC-CSS-C-CCCTTCTTCCEEECCSSCCSCC-CC---
T ss_pred -ccc---ccCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCC-CCC-C-cccCCCCCCCEEECCCCcCccc-CC---
Confidence 221 23567777776643 2222111 1467777777643 222 2 2466677777777776666541 11
Q ss_pred cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEE
Q 010952 196 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 275 (497)
Q Consensus 196 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 275 (497)
...+|++|++++|.+.+ .+ .++.+++|+.|++++|.+.+. +. ..++|+.|++++|.+... + .+..+++|+.|
T Consensus 171 ~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L 242 (454)
T 1jl5_A 171 LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILEEL-P-ELQNLPFLTTI 242 (454)
T ss_dssp CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEE
T ss_pred CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC---CcCcccEEECcCCcCCcc-c-ccCCCCCCCEE
Confidence 12467777777776655 23 466667777777777766542 11 124677777777766532 2 25566777777
Q ss_pred eCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCC
Q 010952 276 NLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT 355 (497)
Q Consensus 276 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 355 (497)
++++|.+..... ..++|++|++++|.+.... ...++|++|++++|.+.... .-.++|+.|++++|.++
T Consensus 243 ~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~----~~~~~L~~L~ls~N~l~~l~----~~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 243 YADNNLLKTLPD----LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIR 310 (454)
T ss_dssp ECCSSCCSSCCS----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCS
T ss_pred ECCCCcCCcccc----cccccCEEECCCCcccccC----cccCcCCEEECcCCccCccc----CcCCcCCEEECcCCcCC
Confidence 777766553211 2356777777776655421 12356777777777665411 01256777777777666
Q ss_pred HhHHHHhcCC-CCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCCh--hHH
Q 010952 356 DTGLAALTSL-TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD--KTL 432 (497)
Q Consensus 356 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~ 432 (497)
. +..+ ++|+.|++++|++++. +. .+++|+.|++++|.++.... .+++|++|++++| .++. ..|
T Consensus 311 ~-----i~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip 376 (454)
T 1jl5_A 311 S-----LCDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIP 376 (454)
T ss_dssp E-----ECCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCCCCC
T ss_pred c-----ccCCcCcCCEEECCCCccccc-cc---cCCcCCEEECCCCccccccc----hhhhccEEECCCC-CCCcCCCCh
Confidence 4 2223 4677777777766652 21 24677777777777665432 3567777777777 5555 344
Q ss_pred HHhhcC-------------CCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHHH
Q 010952 433 ELISGL-------------TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAND 479 (497)
Q Consensus 433 ~~l~~~-------------~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 479 (497)
..+..+ ++|+.|++++|++++.. .+ -++++.|.+.+|.+....
T Consensus 377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~--~i--P~sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP--DI--PESVEDLRMNSERVVDPY 432 (454)
T ss_dssp TTCCEEECCC--------------------------------------------------
T ss_pred HHHHhhhhcccccccccccCcCCEEECCCCcCCccc--cc--hhhHhheeCcCcccCCcc
Confidence 444444 78999999999988631 11 135788888888776653
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=6.2e-27 Score=217.89 Aligned_cols=288 Identities=17% Similarity=0.191 Sum_probs=191.6
Q ss_pred CCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEc
Q 010952 126 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 205 (497)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 205 (497)
+++.++++++. +...+..+. +.+++|+++++. +.......+..+++|++|+++++.++...+..+.++++|++|++
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCC-ccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 78999998853 444554443 689999999954 55556667899999999999999999887888999999999999
Q ss_pred cCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCCh--hHHHHhhCCCCcCEEeCCCCCCC
Q 010952 206 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG 283 (497)
Q Consensus 206 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~ 283 (497)
++|.+.. .+..+ .++|++|++++|.+....+..++.+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 108 s~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCc-cChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 9998875 33322 2799999999999998888889999999999999998864 34456788999999999999876
Q ss_pred HhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhc
Q 010952 284 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 363 (497)
Q Consensus 284 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 363 (497)
..... ..++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.
T Consensus 185 ~l~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------- 254 (330)
T 1xku_A 185 TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK------- 254 (330)
T ss_dssp SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-------
T ss_pred cCCcc---ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-------
Confidence 43211 12566666666666555444455555566666666555544333344444555555555554442
Q ss_pred CCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhh------hcCCCCeecccCCCCCCh--hHHHHh
Q 010952 364 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIK------DLSSLTLLNLSQNCNLTD--KTLELI 435 (497)
Q Consensus 364 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~------~l~~L~~L~l~~~~~l~~--~~~~~l 435 (497)
. |..+..+++|+.|++++|+++......+. ..++++.+++++| .+.. ..+..+
T Consensus 255 -----------------l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N-~~~~~~i~~~~f 315 (330)
T 1xku_A 255 -----------------V-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQPSTF 315 (330)
T ss_dssp -----------------C-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCGGGSCGGGG
T ss_pred -----------------C-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC-cccccccCcccc
Confidence 1 22334445555555555555444333332 1255666666666 3332 234455
Q ss_pred hcCCCCcEEEeeCC
Q 010952 436 SGLTGLVSLNVSNS 449 (497)
Q Consensus 436 ~~~~~L~~L~l~~~ 449 (497)
..+.+++.+++++|
T Consensus 316 ~~~~~l~~l~L~~N 329 (330)
T 1xku_A 316 RCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCCCGGGEEC---
T ss_pred ccccceeEEEeccc
Confidence 56666666666665
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.2e-27 Score=222.80 Aligned_cols=290 Identities=18% Similarity=0.191 Sum_probs=156.7
Q ss_pred CCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 010952 150 KLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNL 229 (497)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 229 (497)
+++.++++++. +.. .+..+ .++++.|+++++.+....+..+.++++|++|++++|.+....+..++.+++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 46666666533 221 12222 245666666666666554555566666666666666655544555555566666666
Q ss_pred CCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchH
Q 010952 230 NRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSS 309 (497)
Q Consensus 230 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 309 (497)
++|.+...... + .++|++|++++|.+....+..+..+++|+.|++++|.+... ..
T Consensus 110 ~~n~l~~l~~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 164 (332)
T 2ft3_A 110 SKNHLVEIPPN-L--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF 164 (332)
T ss_dssp CSSCCCSCCSS-C--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred CCCcCCccCcc-c--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence 65555432111 1 14455555555544433333344444444444444443210 01
Q ss_pred HHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhcc
Q 010952 310 GLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNF 389 (497)
Q Consensus 310 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 389 (497)
.+..+..+ +|++|++++|.+.... .. -.++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~l~-~~--~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTGIP-KD--LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSSCC-SS--SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCccC-cc--ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 12222333 4555555555443311 11 12456666666666655444455566666667776666666555556666
Q ss_pred CCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhc------CCCCcEEEeeCCccC--hhHHHhhcC
Q 010952 390 KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG------LTGLVSLNVSNSRIT--SAGLRHLKP 461 (497)
Q Consensus 390 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~------~~~L~~L~l~~~~l~--~~~~~~l~~ 461 (497)
++|+.|++++|.+... +..+..+++|++|++++| .++...+..+.. .+.|+.|++++|++. +..+..+..
T Consensus 241 ~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp TTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCEEECCCCcCeec-ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 7777777777766644 344566677777777777 566554444433 356788888888766 445566777
Q ss_pred CcccceeecccCC
Q 010952 462 LKNLRSLTLESCK 474 (497)
Q Consensus 462 ~~~L~~L~l~~~~ 474 (497)
+++|+.+++++|.
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 8888888888764
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=7.1e-28 Score=221.80 Aligned_cols=238 Identities=17% Similarity=0.142 Sum_probs=158.1
Q ss_pred HHHHHHhcC---CceeEEEeeCCCCCh--HHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChH
Q 010952 42 WMDVIASQG---SSLLSVDLSGSDVTD--SGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ 116 (497)
Q Consensus 42 ~~~~~~~~~---~~l~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 116 (497)
|.++.|... .++++|+++++.+.+ ..+..++++++|++|++++++.+.+..+..|..+++|++|++++|. +...
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~ 116 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGA 116 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEE
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCc
Confidence 877766543 689999999999887 7788899999999999996336666667778888999999998887 4555
Q ss_pred HHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCC-CCCEEEeeccccCchhHHhhh
Q 010952 117 GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLK 195 (497)
Q Consensus 117 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~ 195 (497)
.|..+.++++|++|++++|......+..+..+++|++|++++|. +.+..+..+..++ +|++|++++|.++...+..+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 67778888888888888865443556667777777777777743 3334555666665 777777777766655555666
Q ss_pred cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEE
Q 010952 196 GLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESL 275 (497)
Q Consensus 196 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 275 (497)
.++ |++|++++|.+.+..+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 555 66666666666554555555666666666666655433322 4444555555555555543333444444555555
Q ss_pred eCCCCCCC
Q 010952 276 NLDSCGIG 283 (497)
Q Consensus 276 ~l~~~~l~ 283 (497)
++++|.+.
T Consensus 274 ~Ls~N~l~ 281 (313)
T 1ogq_A 274 NVSFNNLC 281 (313)
T ss_dssp ECCSSEEE
T ss_pred ECcCCccc
Confidence 55544443
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=7.1e-27 Score=217.61 Aligned_cols=287 Identities=17% Similarity=0.177 Sum_probs=185.3
Q ss_pred CCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEc
Q 010952 126 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 205 (497)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 205 (497)
+++.++++++. +...+..+ .++|+.|++++|. +....+..+..+++|++|+++++.++...+..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 68999999854 55555544 3799999999955 55555678899999999999999999888889999999999999
Q ss_pred cCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCCh--hHHHHhhCCCCcCEEeCCCCCCC
Q 010952 206 EGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITD--ECLVHLKGLTNLESLNLDSCGIG 283 (497)
Q Consensus 206 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~ 283 (497)
++|.+.. ++..+. ++|++|++++|.+....+..++.+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.+.
T Consensus 110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 9998875 333332 799999999999988777778999999999999998863 223334444 7788888777665
Q ss_pred HhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhc
Q 010952 284 DEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT 363 (497)
Q Consensus 284 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 363 (497)
..+.. ..++|++|++++|.+....+..+..+++|++|++++|.+....+ ..+.
T Consensus 186 ~l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~------------------------~~~~ 238 (332)
T 2ft3_A 186 GIPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN------------------------GSLS 238 (332)
T ss_dssp SCCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT------------------------TGGG
T ss_pred ccCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh------------------------hHhh
Confidence 42211 12456666666655554433444445555555555554443333 3344
Q ss_pred CCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhh------cCCCCeecccCCCCCC--hhHHHHh
Q 010952 364 SLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKD------LSSLTLLNLSQNCNLT--DKTLELI 435 (497)
Q Consensus 364 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~------l~~L~~L~l~~~~~l~--~~~~~~l 435 (497)
.+++|+.|++++|.++.. |..+..+++|+.|++++|.++...+..+.. .++|+.|++++| .+. +..+..+
T Consensus 239 ~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~ 316 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATF 316 (332)
T ss_dssp GCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGG
T ss_pred CCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC-cccccccCcccc
Confidence 445555555555544422 333445555555555555555444333322 245566666666 333 3334455
Q ss_pred hcCCCCcEEEeeCC
Q 010952 436 SGLTGLVSLNVSNS 449 (497)
Q Consensus 436 ~~~~~L~~L~l~~~ 449 (497)
..+++|+.+++++|
T Consensus 317 ~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 317 RCVTDRLAIQFGNY 330 (332)
T ss_dssp TTBCCSTTEEC---
T ss_pred cccchhhhhhcccc
Confidence 56666666666655
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=6.5e-28 Score=222.06 Aligned_cols=249 Identities=17% Similarity=0.185 Sum_probs=158.6
Q ss_pred CCCcEEEccCCCCCh--HHHHHhhCCCCCcEEEcCC-CCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCE
Q 010952 198 QKLTLLNLEGCPVTA--ACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLES 274 (497)
Q Consensus 198 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 274 (497)
.+++.|+++++.+.+ ..+..+..+++|++|++++ +.+.+..+..++.+++|++|++++|.+....+..+..+++|+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467778888877765 5666777777777777774 6665555666677777777777777665444445555666666
Q ss_pred EeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCC-CCcEEEcCCCC
Q 010952 275 LNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLS-SLKSLNLDARQ 353 (497)
Q Consensus 275 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~ 353 (497)
|++++|.+....+..+..+++|++|++++|.+.. ..+..+..++ +|+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------------------~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG------------------------AIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE------------------------ECCGGGGCCCTTCCEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC------------------------cCCHHHhhhhhcCcEEECcCCe
Confidence 6666655443333344445555555555554443 3333444444 55555555555
Q ss_pred CCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHH
Q 010952 354 ITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLE 433 (497)
Q Consensus 354 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 433 (497)
++...+..+..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++| .+++..|.
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~ 262 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQ 262 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS-CCEECCCG
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC-cccCcCCh
Confidence 5443344444444 66666666666655555666677777777777776654333 555677888888887 67766677
Q ss_pred HhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCC
Q 010952 434 LISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474 (497)
Q Consensus 434 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 474 (497)
.+..+++|+.|++++|++++.++.. ..+++|+.+++.+|+
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 7778888888888888877655543 677888888888875
No 53
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=3.9e-25 Score=206.57 Aligned_cols=260 Identities=18% Similarity=0.207 Sum_probs=175.9
Q ss_pred CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHHhcCCceeEEEeeCCCCChHHHHHhcCC--CCcC
Q 010952 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDC--SNLQ 78 (497)
Q Consensus 1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~--~~L~ 78 (497)
.||+|++.+||+++.. . ++..|. .++..|...... ...+++++++++.+.+ ..+..+ ++++
T Consensus 11 ~LP~eil~~If~~L~~------~---d~~~~~----~vc~~W~~~~~~-~~~~~~l~l~~~~~~~---~~~~~~~~~~l~ 73 (336)
T 2ast_B 11 SLPDELLLGIFSCLCL------P---ELLKVS----GVCKRWYRLASD-ESLWQTLDLTGKNLHP---DVTGRLLSQGVI 73 (336)
T ss_dssp SSCHHHHHHHHTTSCH------H---HHHHTT----SSCHHHHHHHTC-STTSSEEECTTCBCCH---HHHHHHHHTTCS
T ss_pred hCCHHHHHHHHHhCCH------H---HHHHHH----HHHHHHHHHhcC-chhheeeccccccCCH---HHHHhhhhccce
Confidence 4899999999999832 2 222233 889999988764 5679999999988763 345555 7999
Q ss_pred EEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChH-HHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEecc
Q 010952 79 SLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ-GMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIK 157 (497)
Q Consensus 79 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 157 (497)
.|+++++ .+.+..+ .+..+++|++|++++|. +... .+..+..+++|++|++++|......+..++.+++|++|+++
T Consensus 74 ~L~l~~n-~l~~~~~-~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 74 AFRCPRS-FMDQPLA-EHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp EEECTTC-EECSCCC-SCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred EEEcCCc-cccccch-hhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 9999997 5554333 35578999999999998 4544 78888999999999999975333455667778888888888
Q ss_pred CCCCCCcc-ccccccCCCCCCEEEeecc-ccCch-hHHhhhcCC-CCcEEEccCC--CCC-hHHHHHhhCCCCCcEEEcC
Q 010952 158 WCNCITDS-DMKPLSGLTNLKSLQISCS-KVTDS-GIAYLKGLQ-KLTLLNLEGC--PVT-AACLDSLSALGSLFYLNLN 230 (497)
Q Consensus 158 ~~~~~~~~-~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~--~~~-~~~~~~l~~l~~L~~L~l~ 230 (497)
+|..+.+. .+..+..+++|++|+++++ .+++. .+..+..++ +|++|++++| .++ ...+..+..+++|+.|+++
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 87555543 2333556777777777777 66654 344556666 7777777776 444 3345555666777777777
Q ss_pred CCC-CChhHhHhhhcCCCCCEEEccCCC-CChhHHHHhhCCCCcCEEeCCCC
Q 010952 231 RCQ-LSDDGCEKFSKIGSLKVLNLGFNE-ITDECLVHLKGLTNLESLNLDSC 280 (497)
Q Consensus 231 ~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~ 280 (497)
+|. +.+..+..++.+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 666 444455556666666666666662 33222223455666666666655
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=5.9e-26 Score=213.31 Aligned_cols=278 Identities=19% Similarity=0.230 Sum_probs=147.1
Q ss_pred CCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEE
Q 010952 173 LTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLN 252 (497)
Q Consensus 173 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 252 (497)
|+.....+.+++.++... ..+. ++|++|++++|.+....+..+..+++|++|++++|.+....+..++.+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~iP-~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIP-SGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSCC-TTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccccc-cccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344444555555555322 2221 3566666666666554444566666666666666666555455556666666666
Q ss_pred ccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHH-HHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCC
Q 010952 253 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGL-VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGIS 331 (497)
Q Consensus 253 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 331 (497)
+++|.+....+..+..+++|+.|++++|.+..... ..+..+++|++|++++|. .+.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-----------------------~~~ 163 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-----------------------TFT 163 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-----------------------SCC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-----------------------ccc
Confidence 66666554444445555666666666555543222 233444555555554442 233
Q ss_pred hHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhh-
Q 010952 332 DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHI- 410 (497)
Q Consensus 332 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~- 410 (497)
...+..+.++++|+.|++++|.++...+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+.+..+..+
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence 3223334444555555555555544434444555555555555555554444444445555555555555554322221
Q ss_pred --hhcCCCCeecccCCCCCChh----HHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952 411 --KDLSSLTLLNLSQNCNLTDK----TLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 411 --~~l~~L~~L~l~~~~~l~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 477 (497)
...+.++.++++++ .+++. ++..+..+++|+.|++++|+++......+..+++|++|++++|+++.
T Consensus 244 ~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 244 TGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ---CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 12355556666666 45542 34455666677777777776665443334666777777777776654
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=4.6e-25 Score=207.22 Aligned_cols=274 Identities=21% Similarity=0.160 Sum_probs=196.2
Q ss_pred CCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcE
Q 010952 147 GLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFY 226 (497)
Q Consensus 147 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 226 (497)
.|+.....+.+++ .+.. .+..+. ++|++|+++++.++......+.++++|++|++++|.+.+..+..+.++++|++
T Consensus 29 ~C~~~~~c~~~~~-~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCST-TCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCC-Cccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3455555666653 2332 223332 58999999999999877778999999999999999998876778999999999
Q ss_pred EEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHH-HHhhCCCCcCEEeCCCC-CCCHhHHHHHhCCCCCCEeeccCc
Q 010952 227 LNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL-VHLKGLTNLESLNLDSC-GIGDEGLVNLTGLCNLKCLELSDT 304 (497)
Q Consensus 227 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~~ 304 (497)
|++++|.+....+..++.+++|++|++++|.+..... ..+..+++|+.|++++| .+....+..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 9999999988777778999999999999998885443 35778999999999988 466555566778888999999888
Q ss_pred ccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHH---HhcCCCCCcEEEecCCCcChH
Q 010952 305 QVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA---ALTSLTGLTHLDLFGARITDS 381 (497)
Q Consensus 305 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~ 381 (497)
.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.++..... .....+.++.+++.++.+.+.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 87776666777788888888888877665555555677888888888776653221 122345566666666666542
Q ss_pred ----HHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 382 ----GAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 382 ----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
.+..+..+++|+.|++++|.++......+..+++|++|++++|
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence 2344455566666666666555443333345555555555555
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=4.7e-25 Score=203.60 Aligned_cols=255 Identities=16% Similarity=0.178 Sum_probs=135.7
Q ss_pred EEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCC
Q 010952 178 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 257 (497)
Q Consensus 178 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 257 (497)
..++..+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 33444444444444444555677777777777766666667777777777777777654332 5666777777777766
Q ss_pred CChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHH
Q 010952 258 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 337 (497)
Q Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 337 (497)
+... ...++|+.|++++|.+....+ ..+++|++|++++|.+.......+..+++|++|++++|.+....+..
T Consensus 92 l~~l-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 92 VQEL-----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEE-----EECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cccc-----cCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 5532 233666666666666554332 12455666666666555544444445555666666555555433333
Q ss_pred h-cCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCC
Q 010952 338 L-AGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 416 (497)
Q Consensus 338 l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L 416 (497)
+ ..+++|+.|++++|.++.. .....+++|+.|++++|.++...+. +..+++|+.|++++|.++.. +..+..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTC
T ss_pred HhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCC
Confidence 3 2445555555555555443 1122345555555555555443222 44455555555555555433 2233444555
Q ss_pred CeecccCCCCCC-hhHHHHhhcCCCCcEEEee
Q 010952 417 TLLNLSQNCNLT-DKTLELISGLTGLVSLNVS 447 (497)
Q Consensus 417 ~~L~l~~~~~l~-~~~~~~l~~~~~L~~L~l~ 447 (497)
+.|++++| .+. +..+..+..+++|+.|++.
T Consensus 240 ~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 240 EHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CEEECTTC-CCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CEEEccCC-CccCcCHHHHHhccccceEEECC
Confidence 55555555 343 3344444444445544444
No 57
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.3e-22 Score=192.91 Aligned_cols=259 Identities=18% Similarity=0.198 Sum_probs=175.2
Q ss_pred HHHHhhCCCCCcEEEcCCCCCChhHhHh----hhcCCCCCEEEccCCCCC---hhHHH-------HhhCCCCcCEEeCCC
Q 010952 214 CLDSLSALGSLFYLNLNRCQLSDDGCEK----FSKIGSLKVLNLGFNEIT---DECLV-------HLKGLTNLESLNLDS 279 (497)
Q Consensus 214 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~~~-------~l~~~~~L~~L~l~~ 279 (497)
++..+..+++|+.|++++|.+....+.. +..+++|+.|++++|.+. +..+. .+..+++|+.|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3455677888999999999887765544 557888999999886433 22222 246788888888888
Q ss_pred CCCCH----hHHHHHhCCCCCCEeeccCcccchHHHHhhc----CC---------CCCCEEeccCCCCChHHH----HHh
Q 010952 280 CGIGD----EGLVNLTGLCNLKCLELSDTQVGSSGLRHLS----GL---------TNLESINLSFTGISDGSL----RKL 338 (497)
Q Consensus 280 ~~l~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~----~~---------~~L~~L~l~~~~~~~~~~----~~l 338 (497)
|.+.. ..+..+..+++|++|++++|.++......+. .+ ++|++|++++|.++.... ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 88776 3455667788888888888887654443333 23 788888888887763322 345
Q ss_pred cCCCCCcEEEcCCCCCCHhHH----H-HhcCCCCCcEEEecCCCcC----hHHHHHhhccCCCCeeeecCCCCChhhHHh
Q 010952 339 AGLSSLKSLNLDARQITDTGL----A-ALTSLTGLTHLDLFGARIT----DSGAAYLRNFKNLRSLEICGGGLTDAGVKH 409 (497)
Q Consensus 339 ~~~~~L~~L~l~~~~~~~~~~----~-~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 409 (497)
..+++|+.|++++|.++..+. . .+..+++|+.|++++|.++ ...+..+..+++|+.|++++|.+++.+...
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 567788888888888875432 2 4556788888888888875 344556677788888888888877764433
Q ss_pred ----hhh--cCCCCeecccCCCCCCh----hHHHHh-hcCCCCcEEEeeCCccChhHH--Hhh-cCCcccceeecccC
Q 010952 410 ----IKD--LSSLTLLNLSQNCNLTD----KTLELI-SGLTGLVSLNVSNSRITSAGL--RHL-KPLKNLRSLTLESC 473 (497)
Q Consensus 410 ----~~~--l~~L~~L~l~~~~~l~~----~~~~~l-~~~~~L~~L~l~~~~l~~~~~--~~l-~~~~~L~~L~l~~~ 473 (497)
+.. +++|++|+|++| .++. .++..+ .++++|+.|++++|++++..+ ..+ ..+++++.+++...
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 222 677888888887 6776 355555 457788888888887776542 332 33455555555544
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=6.5e-24 Score=206.19 Aligned_cols=246 Identities=23% Similarity=0.266 Sum_probs=161.2
Q ss_pred CcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCC
Q 010952 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279 (497)
Q Consensus 200 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 279 (497)
...++.++..+.. +|..+ .+++++|++++|.+....+..|+.+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4556666665544 23222 25788888888888777677778888888888888887766556677778888888888
Q ss_pred CCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCC-CCChHHHHHhcCCCCCcEEEcCCCCCCHhH
Q 010952 280 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG 358 (497)
Q Consensus 280 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 358 (497)
|.+....+..+..+++|++|++++|.+.......+..+++|++|+++++ .+.......+.++++|+.|++++|.++..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 8777665555667777888888777776655556667777777777764 33333334455667777777777666653
Q ss_pred HHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC
Q 010952 359 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 438 (497)
Q Consensus 359 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~ 438 (497)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|+|++| .++...+..+..+
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL 289 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence 23455666666666666666655555666666666666666666655555556666666666666 5555444455556
Q ss_pred CCCcEEEeeCCcc
Q 010952 439 TGLVSLNVSNSRI 451 (497)
Q Consensus 439 ~~L~~L~l~~~~l 451 (497)
++|+.|++++|++
T Consensus 290 ~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 290 RYLVELHLHHNPW 302 (452)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEccCCCc
Confidence 6666666666654
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1.4e-24 Score=199.81 Aligned_cols=247 Identities=21% Similarity=0.225 Sum_probs=154.0
Q ss_pred cEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhH--HHHhhCCCCcCEEeCC
Q 010952 201 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDEC--LVHLKGLTNLESLNLD 278 (497)
Q Consensus 201 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~ 278 (497)
+.++.+++.++. +|.. -.++|++|++++|.+.......++.+++|+.|++++|.+.... +..+..+++|+.|+++
T Consensus 10 ~~l~c~~~~l~~-ip~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 356666665544 2222 2257888888888777655555677788888888887776321 2344567778888887
Q ss_pred CCCCCHhHHHHHhCCCCCCEeeccCcccchHHH-HhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCH-
Q 010952 279 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGL-RHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITD- 356 (497)
Q Consensus 279 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~- 356 (497)
+|.+... +..+..+++|++|++++|.+..... ..+..+++|++|++++|.+....+..+.++++|+.|++++|.++.
T Consensus 87 ~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccC-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 7766532 2235567777777777776655432 345666777777777776655444555666677777777666654
Q ss_pred hHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhh
Q 010952 357 TGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELIS 436 (497)
Q Consensus 357 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~ 436 (497)
..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .+++..+..+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCcccCHHHHH
Confidence 22344555666666666666666655555566666666666666666655545555666666666666 55555555555
Q ss_pred cCC-CCcEEEeeCCccC
Q 010952 437 GLT-GLVSLNVSNSRIT 452 (497)
Q Consensus 437 ~~~-~L~~L~l~~~~l~ 452 (497)
.++ +|+.|++++|+++
T Consensus 245 ~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCTTCCEEECTTCCEE
T ss_pred hhhccCCEEEccCCCee
Confidence 553 6666666666654
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=6e-24 Score=205.66 Aligned_cols=246 Identities=23% Similarity=0.248 Sum_probs=169.2
Q ss_pred CcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCC
Q 010952 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279 (497)
Q Consensus 200 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 279 (497)
...++..+..+.. +|..+ .++++.|++++|.+....+..|+.+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 45 ~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSS-CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCc-CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4566666665554 33322 25788888888888777777788888888888888887766666677888888888888
Q ss_pred CCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCC-CCChHHHHHhcCCCCCcEEEcCCCCCCHhH
Q 010952 280 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFT-GISDGSLRKLAGLSSLKSLNLDARQITDTG 358 (497)
Q Consensus 280 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 358 (497)
|.+.......+..+++|++|++++|.+.......+..+++|++|+++++ .+.......+.++++|+.|++++|.++..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 8777665556677788888888888777655556677778888888774 34433334566677777777777766653
Q ss_pred HHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC
Q 010952 359 LAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 438 (497)
Q Consensus 359 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~ 438 (497)
..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|+|++| .++...+..+..+
T Consensus 201 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 -PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPL 278 (440)
T ss_dssp -CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred -cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence 23556667777777777666665666666677777777777766666666666667777777766 5665555555666
Q ss_pred CCCcEEEeeCCcc
Q 010952 439 TGLVSLNVSNSRI 451 (497)
Q Consensus 439 ~~L~~L~l~~~~l 451 (497)
++|+.|++++|++
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 6666666666664
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=4.3e-24 Score=207.44 Aligned_cols=245 Identities=19% Similarity=0.197 Sum_probs=207.2
Q ss_pred CCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC
Q 010952 176 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 255 (497)
Q Consensus 176 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 255 (497)
...++..+..++.. |..+ .+++++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-PQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCcc-CCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34555555555532 2222 26899999999999887778899999999999999999888778899999999999999
Q ss_pred CCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCc-ccchHHHHhhcCCCCCCEEeccCCCCChHH
Q 010952 256 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT-QVGSSGLRHLSGLTNLESINLSFTGISDGS 334 (497)
Q Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 334 (497)
|.+....+..+..+++|+.|++++|.+.......+..+++|++|+++++ .+.......+..+++|++|++++|.+...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 9988766666888999999999999988777777888999999999984 44444445678899999999999988754
Q ss_pred HHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcC
Q 010952 335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414 (497)
Q Consensus 335 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~ 414 (497)
..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..++
T Consensus 212 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 -PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3467889999999999999988778889999999999999999988788888999999999999999988777788899
Q ss_pred CCCeecccCCC
Q 010952 415 SLTLLNLSQNC 425 (497)
Q Consensus 415 ~L~~L~l~~~~ 425 (497)
+|+.|+|++|+
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 99999999994
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=4.3e-24 Score=206.65 Aligned_cols=245 Identities=19% Similarity=0.216 Sum_probs=207.5
Q ss_pred CCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccC
Q 010952 176 LKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGF 255 (497)
Q Consensus 176 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 255 (497)
...++..+..++.. |..+ .++++.|++++|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++
T Consensus 45 ~~~v~c~~~~l~~i-P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREV-PDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSC-CSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcC-CCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34555555555532 2222 26899999999999887778899999999999999999888788899999999999999
Q ss_pred CCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcc-cchHHHHhhcCCCCCCEEeccCCCCChHH
Q 010952 256 NEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSFTGISDGS 334 (497)
Q Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 334 (497)
|.+.......+..+++|+.|++++|.+.......+..+++|++|++++++ +.......+..+++|++|++++|.+....
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 99887666668889999999999999887777778889999999999854 44444456788999999999999887532
Q ss_pred HHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcC
Q 010952 335 LRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLS 414 (497)
Q Consensus 335 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~ 414 (497)
.+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++......+..++
T Consensus 202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 --NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp --CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred --ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 467889999999999999987778888999999999999999988888888999999999999999988777788899
Q ss_pred CCCeecccCCC
Q 010952 415 SLTLLNLSQNC 425 (497)
Q Consensus 415 ~L~~L~l~~~~ 425 (497)
+|+.|+|++|+
T Consensus 280 ~L~~L~L~~Np 290 (440)
T 3zyj_A 280 HLERIHLHHNP 290 (440)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEcCCCC
Confidence 99999999994
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.6e-24 Score=195.75 Aligned_cols=205 Identities=21% Similarity=0.251 Sum_probs=90.0
Q ss_pred CCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCC-CChhHhHhhhcCCCCCEEE
Q 010952 174 TNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLN 252 (497)
Q Consensus 174 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~ 252 (497)
++|++|+++++.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..++.+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455555555555554444445555555555555555444334444445555555555543 3333333344444444444
Q ss_pred ccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCCh
Q 010952 253 LGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISD 332 (497)
Q Consensus 253 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 332 (497)
+++|.+.. ..+..+..+++|++|++++|.+.......+..+++|++|++++|.+..
T Consensus 112 l~~n~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 112 LDRCGLQE------------------------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCE------------------------ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 44444433 222233333444444444443333222233334444444444444433
Q ss_pred HHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCC
Q 010952 333 GSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGL 402 (497)
Q Consensus 333 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 402 (497)
.....+.++++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 2222333444444444444444433333344444444444444444443333344444444444444443
No 64
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=5.4e-22 Score=188.67 Aligned_cols=257 Identities=18% Similarity=0.174 Sum_probs=179.2
Q ss_pred HhhhcCCCCcEEEccCCCCChHHHHH----hhCCCCCcEEEcCCCCCC---hhHhH-------hhhcCCCCCEEEccCCC
Q 010952 192 AYLKGLQKLTLLNLEGCPVTAACLDS----LSALGSLFYLNLNRCQLS---DDGCE-------KFSKIGSLKVLNLGFNE 257 (497)
Q Consensus 192 ~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~---~~~~~-------~l~~l~~L~~L~l~~~~ 257 (497)
..+..+++|++|++++|.+....+.. +..+++|++|++++|.+. ...+. .+..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 45567788889999988887654444 557888899988886433 22222 23677888999998888
Q ss_pred CCh----hHHHHhhCCCCcCEEeCCCCCCCHhHHHHHh----CC---------CCCCEeeccCcccchH-HH---HhhcC
Q 010952 258 ITD----ECLVHLKGLTNLESLNLDSCGIGDEGLVNLT----GL---------CNLKCLELSDTQVGSS-GL---RHLSG 316 (497)
Q Consensus 258 ~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~----~~---------~~L~~L~l~~~~~~~~-~~---~~l~~ 316 (497)
+.. ..+..+..+++|+.|++++|.+....+..+. .+ ++|++|++++|.++.. .+ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 876 3555677788899999988888655444333 23 7888999988887632 22 35567
Q ss_pred CCCCCEEeccCCCCChHH----HH-HhcCCCCCcEEEcCCCCCCHh----HHHHhcCCCCCcEEEecCCCcChHH----H
Q 010952 317 LTNLESINLSFTGISDGS----LR-KLAGLSSLKSLNLDARQITDT----GLAALTSLTGLTHLDLFGARITDSG----A 383 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~----~~-~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~ 383 (497)
+++|++|++++|.++... .. .+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+++.. +
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 788999999888887542 22 566788899999988888633 3455667888999999988888763 3
Q ss_pred HHhhc--cCCCCeeeecCCCCChh----hHHhh-hhcCCCCeecccCCCCCChhHH--HHhh-cCCCCcEEEeeCC
Q 010952 384 AYLRN--FKNLRSLEICGGGLTDA----GVKHI-KDLSSLTLLNLSQNCNLTDKTL--ELIS-GLTGLVSLNVSNS 449 (497)
Q Consensus 384 ~~l~~--~~~L~~L~l~~~~l~~~----~~~~~-~~l~~L~~L~l~~~~~l~~~~~--~~l~-~~~~L~~L~l~~~ 449 (497)
..+.. +++|+.|++++|.++.. .+..+ ..+++|++|++++| .+++..+ ..+. .++.++.+++...
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 44433 78899999998888873 34444 55788999999888 6765542 3332 3445555555443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-24 Score=201.03 Aligned_cols=259 Identities=17% Similarity=0.159 Sum_probs=177.1
Q ss_pred CcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCC
Q 010952 200 LTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDS 279 (497)
Q Consensus 200 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 279 (497)
++..+++.+.+.......+..+++|++|++++|.+....+..++.+++|+.|++++|.+....+ +..+++|+.|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445555555555444555566778888888887777666777777888888888777764332 66777888888877
Q ss_pred CCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH
Q 010952 280 CGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL 359 (497)
Q Consensus 280 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 359 (497)
|.+.... ..++|++|++++|.+..... ..+++|++|++++|.+....+..+..+++|+.|++++|.++...+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 7654322 34678888887777665432 235678888888887776655566667778888888877776544
Q ss_pred HHh-cCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC
Q 010952 360 AAL-TSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 438 (497)
Q Consensus 360 ~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~ 438 (497)
..+ ..+++|+.|++++|.++... ....+++|+.|++++|.+++..+ .+..+++|++|++++| .++. ++..+..+
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N-~l~~-l~~~~~~l 236 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVL-IEKALRFS 236 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCE-ECTTCCCC
T ss_pred HHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCC-cccc-hhhHhhcC
Confidence 444 35677888888888776541 12347778888888887776643 3666778888888887 6664 45556677
Q ss_pred CCCcEEEeeCCccC-hhHHHhhcCCcccceeecccC
Q 010952 439 TGLVSLNVSNSRIT-SAGLRHLKPLKNLRSLTLESC 473 (497)
Q Consensus 439 ~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~~ 473 (497)
++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 78888888888777 555566677777777777643
No 66
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=6e-22 Score=184.88 Aligned_cols=223 Identities=22% Similarity=0.234 Sum_probs=102.4
Q ss_pred CcEEEccCCCCChHHHHHhhCC--CCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChh-HHHHhhCCCCcCEEe
Q 010952 200 LTLLNLEGCPVTAACLDSLSAL--GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDE-CLVHLKGLTNLESLN 276 (497)
Q Consensus 200 L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~ 276 (497)
++.++++++.+.. ..+..+ ++++.++++++.+.+..+. +..+++|+.|++++|.+... .+..+..+++|+.|+
T Consensus 49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 5556666555542 223333 4555555555554433222 22345555555555544432 333444455555555
Q ss_pred CCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChH-HHHHhcCCCCCcEEEcCCC-CC
Q 010952 277 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDG-SLRKLAGLSSLKSLNLDAR-QI 354 (497)
Q Consensus 277 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~-~~ 354 (497)
+++|.+.+..+..++.+++|++|++++|. .+++. .+..+.++++|+.|++++| .+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~-----------------------~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCS-----------------------GFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCB-----------------------SCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCC-----------------------CCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 55554444444444444455555554441 33332 2222344444444444444 44
Q ss_pred CHhH-HHHhcCCC-CCcEEEecCC--CcC-hHHHHHhhccCCCCeeeecCCC-CChhhHHhhhhcCCCCeecccCCCCCC
Q 010952 355 TDTG-LAALTSLT-GLTHLDLFGA--RIT-DSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLT 428 (497)
Q Consensus 355 ~~~~-~~~~~~~~-~L~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~l~ 428 (497)
++.+ +..+..++ +|++|++++| .++ ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|..+.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 4332 22233444 5555555554 233 2223333445555555555554 444444444445555555555553333
Q ss_pred hhHHHHhhcCCCCcEEEeeCC
Q 010952 429 DKTLELISGLTGLVSLNVSNS 449 (497)
Q Consensus 429 ~~~~~~l~~~~~L~~L~l~~~ 449 (497)
+.....+.++++|+.|++++|
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHHHhcCCCCCEEeccCc
Confidence 333334444555555555555
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1.3e-23 Score=191.08 Aligned_cols=224 Identities=23% Similarity=0.252 Sum_probs=165.8
Q ss_pred cEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCc
Q 010952 225 FYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDT 304 (497)
Q Consensus 225 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 304 (497)
+.++.+++.+.... . +..++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip-~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP-V--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCC-T--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCC-c--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 46667666665432 2 23468888888888887665556777888888888888777666666777888888888888
Q ss_pred c-cchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHH
Q 010952 305 Q-VGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGA 383 (497)
Q Consensus 305 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 383 (497)
. +....+..+..+++|++|++++|.+....+..+.++++|+.|++++|.++......+..+++|+.|++++|.++...+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 655555667777888888888887776555667777888888888887776555556677888888888887776655
Q ss_pred HHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 384 AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 384 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .+++..+..+..+++|+.|++++|++.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 56677788888888888877776677777778888888887 677766667777788888888887765
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.5e-23 Score=193.99 Aligned_cols=231 Identities=20% Similarity=0.182 Sum_probs=125.7
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCE
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVK 129 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 129 (497)
.++++.|+++++.+. ..+..+.++++|++|++++| .+. ..+..+..+++|++|++++|.. . .+|..++++++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l-~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPL-R-ALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCC-C-CCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCcc-c-cCcHHHhcCcCCCE
Confidence 477888888888776 55666777888888888877 455 4456677788888888888764 3 45667777888888
Q ss_pred EeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCC
Q 010952 130 LDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCP 209 (497)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 209 (497)
|++++|......+..+.. .. ....+..+++|++|++++|.++ ..+..+.++++|++|++++|.
T Consensus 155 L~L~~n~~~~~~p~~~~~------~~----------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 155 LSIRACPELTELPEPLAS------TD----------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EEEEEETTCCCCCSCSEE------EC-----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred EECCCCCCccccChhHhh------cc----------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence 888776655544444332 00 0011223444444444444444 223334444444444444444
Q ss_pred CChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952 210 VTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 289 (497)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 289 (497)
+.+ .+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus 218 l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 218 LSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 443 2223444444555555444444444444444455555555544444333333444555555555554444444444
Q ss_pred HhCCCCCCEeeccC
Q 010952 290 LTGLCNLKCLELSD 303 (497)
Q Consensus 290 l~~~~~L~~L~l~~ 303 (497)
+..+++++.+.+..
T Consensus 297 l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 297 IAQLPANCIILVPP 310 (328)
T ss_dssp GGGSCTTCEEECCG
T ss_pred HhhccCceEEeCCH
Confidence 45555555555543
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=2.1e-23 Score=191.97 Aligned_cols=247 Identities=23% Similarity=0.249 Sum_probs=157.5
Q ss_pred eEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChH--HHHHHhCCCCCCEEe
Q 010952 54 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQ--GMKAFAGLINLVKLD 131 (497)
Q Consensus 54 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~ 131 (497)
+.++.++.+++ .+|.. -.++|++|++++| .+.......|..+++|++|++++|.. ... .+..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~--~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTG--IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSC--CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCC--CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEE
Confidence 46677776654 23322 2368888888887 56655455577888888888888863 321 145566788888888
Q ss_pred ccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCC
Q 010952 132 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVT 211 (497)
Q Consensus 132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 211 (497)
+++|. +...+..+..+++|++|+++++..........+..+++|++|+++++.+....+..+.++++|++|++++|.+.
T Consensus 85 Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 88864 44555567778888888888754332222245667777777777777776666666677777777777777665
Q ss_pred h-HHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHH
Q 010952 212 A-ACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNL 290 (497)
Q Consensus 212 ~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l 290 (497)
+ ..+..+..+++|++|++++|.+....+..++.+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 4 344556666777777777777666555566666667777776666654433345556666666666665554444444
Q ss_pred hCCC-CCCEeeccCccc
Q 010952 291 TGLC-NLKCLELSDTQV 306 (497)
Q Consensus 291 ~~~~-~L~~L~l~~~~~ 306 (497)
..++ +|++|++++|.+
T Consensus 244 ~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCCTTCCEEECTTCCE
T ss_pred HhhhccCCEEEccCCCe
Confidence 4442 555555555544
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.5e-22 Score=188.91 Aligned_cols=222 Identities=22% Similarity=0.238 Sum_probs=123.8
Q ss_pred EEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHh----HhhhcCC-CCCEEEccCCCCChhHHHHhhCC-----CCc
Q 010952 203 LNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGC----EKFSKIG-SLKVLNLGFNEITDECLVHLKGL-----TNL 272 (497)
Q Consensus 203 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L 272 (497)
..++.+.+++..+..+...++|++|++++|.+....+ ..+..++ +|+.|++++|.+....+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677777777666665666668888888887766555 5566666 77888887777765444333332 777
Q ss_pred CEEeCCCCCCCHhHHHH----HhCC-CCCCEeeccCcccchHHHHh----hcC-CCCCCEEeccCCCCChHH----HHHh
Q 010952 273 ESLNLDSCGIGDEGLVN----LTGL-CNLKCLELSDTQVGSSGLRH----LSG-LTNLESINLSFTGISDGS----LRKL 338 (497)
Q Consensus 273 ~~L~l~~~~l~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~----~~~l 338 (497)
+.|++++|.+.+..+.. +..+ ++|++|++++|.++...... +.. .++|++|++++|.+++.. ...+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 77777777665444332 3333 66777777777665543332 222 246666666666655322 2333
Q ss_pred cCCC-CCcEEEcCCCCCCHhHHH----HhcCC-CCCcEEEecCCCcChH----HHHHhhc-cCCCCeeeecCCCCChhhH
Q 010952 339 AGLS-SLKSLNLDARQITDTGLA----ALTSL-TGLTHLDLFGARITDS----GAAYLRN-FKNLRSLEICGGGLTDAGV 407 (497)
Q Consensus 339 ~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~l~~-~~~L~~L~l~~~~l~~~~~ 407 (497)
...+ +|+.|++++|.+++.+.. .+..+ ++|+.|++++|.+++. .+..+.. .++|++|++++|.+++.++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3443 666666666655544332 22233 3566666666655542 2222333 3355555555555555433
Q ss_pred Hhh----hhcCCCCeecccCC
Q 010952 408 KHI----KDLSSLTLLNLSQN 424 (497)
Q Consensus 408 ~~~----~~l~~L~~L~l~~~ 424 (497)
..+ ..+++|++|++++|
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHhcCCCccEEEeccC
Confidence 222 23355555555555
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.2e-24 Score=200.27 Aligned_cols=254 Identities=20% Similarity=0.162 Sum_probs=148.6
Q ss_pred hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCCh-hHhHhh-------hcCCCCCEEEccCCCCChhHHHHh
Q 010952 195 KGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSD-DGCEKF-------SKIGSLKVLNLGFNEITDECLVHL 266 (497)
Q Consensus 195 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l-------~~l~~L~~L~l~~~~~~~~~~~~l 266 (497)
...++|+.++++++.+ ..|..+... |+.|+++++.+.. ..+..+ ..+++|++|++++|.+.+..+..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3345667777777766 234433332 5566666655422 111111 145666666666665554333322
Q ss_pred --hCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCC
Q 010952 267 --KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSL 344 (497)
Q Consensus 267 --~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 344 (497)
..+++|+.|++++|.+... +..+..+ .....++|++|++++|.+....+..+.++++|
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l-------------------~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAEL-------------------QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHH-------------------HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHH-------------------HHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4455555555555544433 2222221 00012555555555555554444455566666
Q ss_pred cEEEcCCCCCCHh--HHHHh--cCCCCCcEEEecCCCcCh---HHHHHhhccCCCCeeeecCCCCChhhH-HhhhhcCCC
Q 010952 345 KSLNLDARQITDT--GLAAL--TSLTGLTHLDLFGARITD---SGAAYLRNFKNLRSLEICGGGLTDAGV-KHIKDLSSL 416 (497)
Q Consensus 345 ~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L 416 (497)
+.|++++|.+... .+..+ ..+++|+.|++++|.++. .....+..+++|+.|++++|.+.+..+ ..+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 6666666665543 12233 567777777777777763 222334567788888888888777542 334456888
Q ss_pred CeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCHH
Q 010952 417 TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 478 (497)
Q Consensus 417 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 478 (497)
++|++++| .++. +|..+. ++|+.|++++|++++. +. +..+++|++|++++|+++++
T Consensus 256 ~~L~Ls~N-~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 256 NSLNLSFT-GLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEECTTS-CCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CEEECCCC-ccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 88888888 6763 444443 7899999999988876 33 78889999999999988753
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.5e-22 Score=197.57 Aligned_cols=212 Identities=18% Similarity=0.215 Sum_probs=102.4
Q ss_pred CCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCC
Q 010952 199 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLD 278 (497)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 278 (497)
+|++|++++|.+....+..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.+... ...++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEEECc
Confidence 56666666666665555556666666666666666554332 55566666666666655431 122555666665
Q ss_pred CCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhc-CCCCCcEEEcCCCCCCHh
Q 010952 279 SCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDT 357 (497)
Q Consensus 279 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~ 357 (497)
+|.+....+ ..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+. .+++|+.|++++|.++..
T Consensus 108 ~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 555543322 1234555555555554444333444445555555555544443333332 344455555555444432
Q ss_pred HHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 358 GLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 358 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
.....+++|+.|++++|.+++.++. +..+++|+.|++++|.+++. +..+..+++|+.|++++|
T Consensus 185 --~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 185 --KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp --ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC
T ss_pred --cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC
Confidence 1122344444444444444433222 33444444444444444432 222333344444444444
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.6e-21 Score=181.97 Aligned_cols=252 Identities=17% Similarity=0.211 Sum_probs=194.8
Q ss_pred EEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHH----HHhhCCC-CcCEEeCCCCCCCHhHHHHHhCC-----CC
Q 010952 226 YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECL----VHLKGLT-NLESLNLDSCGIGDEGLVNLTGL-----CN 295 (497)
Q Consensus 226 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~l~~~~~~~l~~~-----~~ 295 (497)
++.++++.+.+..+..+...++|+.|++++|.+....+ ..+..++ +|+.|++++|.+.+..+..+... ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888777777767779999999999887555 6677888 89999999998877655555543 89
Q ss_pred CCEeeccCcccchHHHH----hhcCC-CCCCEEeccCCCCChHHHHH----hcC-CCCCcEEEcCCCCCCHhHH----HH
Q 010952 296 LKCLELSDTQVGSSGLR----HLSGL-TNLESINLSFTGISDGSLRK----LAG-LSSLKSLNLDARQITDTGL----AA 361 (497)
Q Consensus 296 L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~~----~~ 361 (497)
|++|++++|.++..... .+..+ ++|++|++++|.+++..... +.. .++|++|++++|.+++.+. ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999998765444 34455 89999999999887655544 334 3699999999999986444 33
Q ss_pred hcCCC-CCcEEEecCCCcChHHHHH----hhcc-CCCCeeeecCCCCChhhHH----hhhh-cCCCCeecccCCCCCChh
Q 010952 362 LTSLT-GLTHLDLFGARITDSGAAY----LRNF-KNLRSLEICGGGLTDAGVK----HIKD-LSSLTLLNLSQNCNLTDK 430 (497)
Q Consensus 362 ~~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~l~~~~~~----~~~~-l~~L~~L~l~~~~~l~~~ 430 (497)
+...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+++.+.. .+.. .++|++|++++| .+++.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 240 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGP 240 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcH
Confidence 45565 9999999999988765544 3455 5999999999999885444 3333 469999999999 78775
Q ss_pred HH----HHhhcCCCCcEEEeeCCc---cChhHH----HhhcCCcccceeecccCCCCHH
Q 010952 431 TL----ELISGLTGLVSLNVSNSR---ITSAGL----RHLKPLKNLRSLTLESCKVTAN 478 (497)
Q Consensus 431 ~~----~~l~~~~~L~~L~l~~~~---l~~~~~----~~l~~~~~L~~L~l~~~~~~~~ 478 (497)
.+ ..+..+++|+.|++++|. ++.... ..+..+++|+.|++++|.+.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 44 344678999999999998 333322 3456788999999999999876
No 74
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.5e-22 Score=184.86 Aligned_cols=231 Identities=17% Similarity=0.089 Sum_probs=109.4
Q ss_pred CCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCC
Q 010952 98 GLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLK 177 (497)
Q Consensus 98 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 177 (497)
..+++++|+++++.. . .+|..+.++++|++|++++|. +...+..+..+++|++|++++|... ..+..+..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l-~-~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPL-P-QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCC-S-SCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCc-h-hcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence 356777788877763 3 445556667777777777754 3355556667777777777764432 3445566667777
Q ss_pred EEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCC
Q 010952 178 SLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNE 257 (497)
Q Consensus 178 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 257 (497)
+|++++|.+....+..+.. ..+ ...+..+++|++|++++|.+. ..+..++.+++|+.|++++|.
T Consensus 154 ~L~L~~n~~~~~~p~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EEEEEEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC
T ss_pred EEECCCCCCccccChhHhh------ccc---------hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC
Confidence 7777665544444333322 000 001122344444444444433 222333444444444444444
Q ss_pred CChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHH
Q 010952 258 ITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRK 337 (497)
Q Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 337 (497)
+... +..+..+++|+.|++++|.+....+..+..+++|++|++++|......+..+..+++|++|++++|.+....+..
T Consensus 218 l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 218 LSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 3321 112333444444444444333333333333444444444444333333333344444444444444433333344
Q ss_pred hcCCCCCcEEEcC
Q 010952 338 LAGLSSLKSLNLD 350 (497)
Q Consensus 338 l~~~~~L~~L~l~ 350 (497)
+.++++++.+.+.
T Consensus 297 l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 297 IAQLPANCIILVP 309 (328)
T ss_dssp GGGSCTTCEEECC
T ss_pred HhhccCceEEeCC
Confidence 4444444444443
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=7.4e-24 Score=195.06 Aligned_cols=206 Identities=20% Similarity=0.191 Sum_probs=105.0
Q ss_pred CCCCCcEEEcCCCCCChhHhHhh--hcCCCCCEEEccCCCCChhHHHHhhCC-----CCcCEEeCCCCCCCHhHHHHHhC
Q 010952 220 ALGSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDECLVHLKGL-----TNLESLNLDSCGIGDEGLVNLTG 292 (497)
Q Consensus 220 ~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~l~~~~~~~l~~ 292 (497)
++++|++|++++|.+.+..+..+ +.+++|+.|++++|.+... +..+..+ ++|+.|++++|.+....+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56677777777777665555443 6677777777777766643 2222222 56666666666555444444555
Q ss_pred CCCCCEeeccCcccchH--HHHhh--cCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCC
Q 010952 293 LCNLKCLELSDTQVGSS--GLRHL--SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGL 368 (497)
Q Consensus 293 ~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 368 (497)
+++|++|++++|.+... .+..+ ..+++|++|++++|.+.... ......+..+++|
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~~~~~~~l~~L 230 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS---------------------GVCSALAAARVQL 230 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH---------------------HHHHHHHHTTCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH---------------------HHHHHHHhcCCCC
Confidence 55555555555554332 11122 34445555555555444111 1111222234444
Q ss_pred cEEEecCCCcChHHH-HHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEee
Q 010952 369 THLDLFGARITDSGA-AYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 447 (497)
Q Consensus 369 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~ 447 (497)
+.|++++|.+.+..+ ..+..+++|+.|++++|.++.. +..+. ++|++|++++| .+++. +. +..+++|++|+++
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~--~~L~~L~Ls~N-~l~~~-p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLSYN-RLDRN-PS-PDELPQVGNLSLK 304 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--SEEEEEECCSS-CCCSC-CC-TTTSCEEEEEECT
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--CCceEEECCCC-CCCCC-hh-HhhCCCCCEEecc
Confidence 444444444443221 1222345555555555555532 22222 56666666666 55554 22 5566666666666
Q ss_pred CCccCh
Q 010952 448 NSRITS 453 (497)
Q Consensus 448 ~~~l~~ 453 (497)
+|++++
T Consensus 305 ~N~l~~ 310 (312)
T 1wwl_A 305 GNPFLD 310 (312)
T ss_dssp TCTTTC
T ss_pred CCCCCC
Confidence 666554
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=3.8e-21 Score=191.28 Aligned_cols=266 Identities=20% Similarity=0.114 Sum_probs=201.8
Q ss_pred CCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEE
Q 010952 149 MKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLN 228 (497)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 228 (497)
.+++.|+++++. +. ..+..+. ++|++|++++|.++.... .+++|++|++++|.++. ++. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~-L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCC-cC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 468999999855 33 2334343 799999999998885332 57899999999998875 332 678999999
Q ss_pred cCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccch
Q 010952 229 LNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGS 308 (497)
Q Consensus 229 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 308 (497)
+++|.+..... .+++|+.|++++|.+.... ..+++|+.|++++|.+.... ..+++|+.|++++|.+..
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp----~~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLP----VLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCcCC----CCCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC
Confidence 99998876432 5688999999999887522 23588999999999776532 245789999999988776
Q ss_pred HHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhc
Q 010952 309 SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRN 388 (497)
Q Consensus 309 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 388 (497)
.. ..+++|+.|++++|.+.... ...++|+.|++++|.++... ..+++|+.|++++|.++... ..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~ 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence 32 45688999999998876421 23578999999998887532 23578999999999887642 45
Q ss_pred cCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhc
Q 010952 389 FKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLK 460 (497)
Q Consensus 389 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~ 460 (497)
+++|+.|++++|.++.... .+++|+.|++++| .++. +|..+.++++|+.|++++|++++..+..+.
T Consensus 240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N-~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN-QLTR-LPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC-CCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 7889999999998886543 4688999999998 7774 467788889999999999998887776654
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=9.2e-23 Score=198.98 Aligned_cols=243 Identities=18% Similarity=0.179 Sum_probs=193.8
Q ss_pred HHHHhhCC----CCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHH
Q 010952 214 CLDSLSAL----GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVN 289 (497)
Q Consensus 214 ~~~~l~~l----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 289 (497)
++..+..+ ++|+.|++++|.+....+..++.+++|++|++++|.+.+..+ +..+++|+.|++++|.+....
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---
Confidence 35555444 489999999999988777889999999999999998875443 788899999999998776432
Q ss_pred HhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhc-CCCCC
Q 010952 290 LTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGL 368 (497)
Q Consensus 290 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L 368 (497)
..++|++|++++|.+..... ..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+. .+++|
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 34889999999998876533 3468899999999988877776777889999999999988876666654 68899
Q ss_pred cEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeC
Q 010952 369 THLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSN 448 (497)
Q Consensus 369 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~ 448 (497)
+.|++++|.+++.. ....+++|+.|++++|.+++..+. +..+++|+.|++++| .++. +|..+..+++|+.|++++
T Consensus 172 ~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 172 EHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVL-IEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCE-ECTTCCCCTTCCEEECTT
T ss_pred cEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC-cCcc-cchhhccCCCCCEEEcCC
Confidence 99999999888752 233588999999999998887544 777899999999998 7775 456677888999999999
Q ss_pred CccC-hhHHHhhcCCcccceeecc
Q 010952 449 SRIT-SAGLRHLKPLKNLRSLTLE 471 (497)
Q Consensus 449 ~~l~-~~~~~~l~~~~~L~~L~l~ 471 (497)
|++. +..+..+..++.|+.+++.
T Consensus 247 N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 247 NGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcCcchHHHHHhCCCCcEEecc
Confidence 9887 5566677788888888775
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=5.6e-21 Score=190.06 Aligned_cols=268 Identities=21% Similarity=0.117 Sum_probs=212.2
Q ss_pred CCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEE
Q 010952 125 INLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLN 204 (497)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 204 (497)
.++++|+++++. +...+..+. ++|++|++++|. +... +. .+++|++|++++|.++.... .+++|++|+
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~l-p~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSL-PA---LPPELRTLEVSGNQLTSLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCC-CC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCC-cCccChhhC--CCCcEEEecCCC-CCCC-CC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence 369999999864 556665554 799999999965 4322 22 67899999999999885332 679999999
Q ss_pred ccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCH
Q 010952 205 LEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGD 284 (497)
Q Consensus 205 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 284 (497)
+++|.+... +. .+++|+.|++++|.+..... .+++|+.|++++|.+.... ...++|+.|++++|.+..
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC
Confidence 999988763 22 67899999999998876322 3589999999999887532 245789999999998876
Q ss_pred hHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcC
Q 010952 285 EGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTS 364 (497)
Q Consensus 285 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 364 (497)
.. ..+++|+.|++++|.+.... ...++|+.|++++|.+.... ..+++|+.|++++|.++... ..
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp----~~ 239 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VL 239 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC----CC
T ss_pred Cc----ccCCCCcEEECCCCCCCCCC----CccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC----CC
Confidence 43 45789999999999887522 23579999999999887432 23589999999999988743 56
Q ss_pred CCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC
Q 010952 365 LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL 438 (497)
Q Consensus 365 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~ 438 (497)
+++|+.|++++|.++.... .+++|+.|++++|.++.+ +..+..+++|+.|+|++| .+++..+..+..+
T Consensus 240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~L 307 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQALREI 307 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHHHHHhc
Confidence 7999999999999886432 578999999999999966 667888999999999999 7998888776643
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=1.4e-21 Score=176.82 Aligned_cols=204 Identities=22% Similarity=0.244 Sum_probs=102.8
Q ss_pred CCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEecc
Q 010952 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 326 (497)
Q Consensus 247 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 326 (497)
++++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------- 97 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS----------- 97 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-----------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-----------
Confidence 455566655555543333445555555555555555443333444445555555555544443333344
Q ss_pred CCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChH-HHHHhhccCCCCeeeecCCCCChh
Q 010952 327 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS-GAAYLRNFKNLRSLEICGGGLTDA 405 (497)
Q Consensus 327 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~ 405 (497)
++++|+.|++++|.+.......+..+++|+.|++++|.+... .+..+..+++|++|++++|.+++.
T Consensus 98 -------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 98 -------------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp -------------TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred -------------CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 444555555544444433322344455555555555555432 234455555566666655555554
Q ss_pred hHHhhhhcCCCC----eecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCC
Q 010952 406 GVKHIKDLSSLT----LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVT 476 (497)
Q Consensus 406 ~~~~~~~l~~L~----~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 476 (497)
.+..+..+++|+ +|++++| .++...+..+ ...+|+.|++++|.+++.....+..+++|+.|++++|+++
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CHHHhhhhhhccccceeeecCCC-cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 444444444444 5556665 4544332222 2235666666666655544444555666666666665554
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=3.8e-21 Score=173.14 Aligned_cols=201 Identities=19% Similarity=0.211 Sum_probs=115.5
Q ss_pred CCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEecc
Q 010952 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 326 (497)
Q Consensus 247 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 326 (497)
..+.++++++.++.. +..+ .++++.|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 456777777666532 2111 2467777777776665554456666677777777666655444445556666666666
Q ss_pred CCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhh
Q 010952 327 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 406 (497)
Q Consensus 327 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 406 (497)
+|.+.......+.++++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 66655444444555666666666666655544444555566666666666555544444555566666666666555554
Q ss_pred HHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCcc
Q 010952 407 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 451 (497)
Q Consensus 407 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 451 (497)
+..+..+++|++|++++| .++...+..+..+++|+.|++++|++
T Consensus 174 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 444555555666666655 45544444455555555555555554
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=3.1e-20 Score=167.96 Aligned_cols=203 Identities=23% Similarity=0.214 Sum_probs=95.8
Q ss_pred ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEe
Q 010952 52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLD 131 (497)
Q Consensus 52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 131 (497)
++++|+++++.+++..+..+.++++|++|++++| .+....+..|..+++|++|++++|. +....+..+.++++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEE
Confidence 4556666655555433334555555555555555 3444334445555555555555554 2333334445555555555
Q ss_pred ccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCch-hHHhhhcCCCCcEEEccCCCC
Q 010952 132 LERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDS-GIAYLKGLQKLTLLNLEGCPV 210 (497)
Q Consensus 132 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 210 (497)
+++|.........+..+++|++|+++ +|.+... .+..+.++++|++|++++|.+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~-------------------------~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVA-------------------------HNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECC-------------------------SSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCccccCchhcccCCCCCEEECc-------------------------CCccceecCchhhccCCCCCEEECCCCCC
Confidence 55543222222234444445555544 4444432 233444445555555555544
Q ss_pred ChHHHHHhhCCCCCc----EEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCC
Q 010952 211 TAACLDSLSALGSLF----YLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGI 282 (497)
Q Consensus 211 ~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 282 (497)
....+..+..+++|+ .|++++|.+....+..+. ..+|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 433222333333333 455555555443332222 23555555555555543333345555666666655544
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.1e-20 Score=168.26 Aligned_cols=212 Identities=20% Similarity=0.167 Sum_probs=131.8
Q ss_pred hHHHHHHhcCCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHH
Q 010952 41 KWMDVIASQGSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKA 120 (497)
Q Consensus 41 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 120 (497)
.|.+..|.....++.++++++.++. +|..+. +++++|++++| .+....+..|.++++|++|++++|. +....+..
T Consensus 6 ~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~ 80 (270)
T 2o6q_A 6 KKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI 80 (270)
T ss_dssp GGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTT
T ss_pred CCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhh
Confidence 3555555444578899999988763 443332 57899999887 5666556678888888888888886 34444445
Q ss_pred HhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCC
Q 010952 121 FAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKL 200 (497)
Q Consensus 121 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 200 (497)
+.++++|++|++++|......+..+..+++|++|+++++. +....+..+..+++|++|++++|.+.......+..+++|
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 6777888888887754332223445667777777777633 333444455666666666666666665544455666666
Q ss_pred cEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCC
Q 010952 201 TLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEI 258 (497)
Q Consensus 201 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 258 (497)
++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 6666666665554444455556666666666655544444455555555555555543
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=2.2e-20 Score=171.83 Aligned_cols=231 Identities=17% Similarity=0.083 Sum_probs=135.1
Q ss_pred CCCcEEEcCCCCCChhHhHh---hhcCCCCCEEEccCCCCChhHHHHh--hCCCCcCEEeCCCCCCCHhHHHHHhCCCCC
Q 010952 222 GSLFYLNLNRCQLSDDGCEK---FSKIGSLKVLNLGFNEITDECLVHL--KGLTNLESLNLDSCGIGDEGLVNLTGLCNL 296 (497)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 296 (497)
..++.+.+.++.+....... +..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+....+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--------- 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS--------- 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence 34666666666554332211 1223456666666555544333333 444555555555554432110
Q ss_pred CEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHH----HHhcCCCCCcEEE
Q 010952 297 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGL----AALTSLTGLTHLD 372 (497)
Q Consensus 297 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ 372 (497)
......+..+++|++|++++|.+....+..+.++++|+.|++++|.+..... ..+..+++|+.|+
T Consensus 135 -----------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 135 -----------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp -----------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred -----------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 0011222345556666666665554444455566666666666666544211 1124567777777
Q ss_pred ecCCCcChHHH--H-HhhccCCCCeeeecCCCCChhhHHhhhhc---CCCCeecccCCCCCChhHHHHhhcCCCCcEEEe
Q 010952 373 LFGARITDSGA--A-YLRNFKNLRSLEICGGGLTDAGVKHIKDL---SSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV 446 (497)
Q Consensus 373 l~~~~~~~~~~--~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~l---~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l 446 (497)
+++|.++.... . .+..+++|++|++++|.+.+..+..+..+ ++|++|++++| .++. +|..+ .++|+.|++
T Consensus 204 Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~-lp~~~--~~~L~~L~L 279 (310)
T 4glp_A 204 LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ-VPKGL--PAKLRVLDL 279 (310)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS-CCSCC--CSCCSCEEC
T ss_pred CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCc-hhhhh--cCCCCEEEC
Confidence 77777764322 2 24667888888888888877655555444 68888888888 6774 34444 378889999
Q ss_pred eCCccChhHHHhhcCCcccceeecccCCCCHH
Q 010952 447 SNSRITSAGLRHLKPLKNLRSLTLESCKVTAN 478 (497)
Q Consensus 447 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 478 (497)
++|++++.. .+..+++|+.|++++|+++++
T Consensus 280 s~N~l~~~~--~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 280 SSNRLNRAP--QPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CSCCCCSCC--CTTSCCCCSCEECSSTTTSCC
T ss_pred CCCcCCCCc--hhhhCCCccEEECcCCCCCCC
Confidence 988888642 256788899999999988754
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=2.6e-20 Score=167.80 Aligned_cols=211 Identities=20% Similarity=0.196 Sum_probs=144.7
Q ss_pred hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952 242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 321 (497)
Q Consensus 242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 321 (497)
...+++|+.|+++++.+... ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.......+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44667888888888776642 2366778888888888776653 2566777888888888777665555566777788
Q ss_pred EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952 322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 401 (497)
Q Consensus 322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 401 (497)
+|++++|.+....+..+.++++|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 88887777765555556677777777777777776555556667777777777777776655556667777777777777
Q ss_pred CChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcc
Q 010952 402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKN 464 (497)
Q Consensus 402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 464 (497)
+.+..+..+..+++|+.|++++| .+. +.+++|+.|+++.|.+++.++..++.++.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHhCCcCCCEEEccCC-Ccc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 77665555666777777777777 333 23566777777777766666555544433
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.9e-20 Score=168.64 Aligned_cols=207 Identities=21% Similarity=0.203 Sum_probs=140.0
Q ss_pred hCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCE
Q 010952 219 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 298 (497)
Q Consensus 219 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 298 (497)
..+++|+.|+++++.+... ..++.+++|++|++++|.+... ..+..+++|+.|++++|.+....+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 4556777777777766542 3466677777777777776643 24667777777777777776555555666777777
Q ss_pred eeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCc
Q 010952 299 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 378 (497)
Q Consensus 299 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 378 (497)
|++++|.+.......+..+++|++|++++|.+....+..+.++++|+.|++++|.++...+..+..+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 77777777665555566777777777777776655555566777777777777777765555566677777777777777
Q ss_pred ChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhc
Q 010952 379 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISG 437 (497)
Q Consensus 379 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~ 437 (497)
.+..+..+..+++|+.|++++|++... +++|+.++++.| .+++.+|..++.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n-~~~g~ip~~~~~ 244 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN-KHSGVVRNSAGS 244 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHH-HTGGGBBCTTSC
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHH-hCCCcccCcccc
Confidence 766555566777777777777766532 456777777766 565555554443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=2.3e-19 Score=164.42 Aligned_cols=196 Identities=28% Similarity=0.377 Sum_probs=159.7
Q ss_pred hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952 242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 321 (497)
Q Consensus 242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 321 (497)
.+.+++|+.|+++++.+.... .+..+++|+.|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 345788999999999887532 47788999999999998876555 78889999999999987764 3577889999
Q ss_pred EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952 322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 401 (497)
Q Consensus 322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 401 (497)
+|++++|.+.... .+..+++|+.|++++|.++.... +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 9999999887643 37888999999999998887543 7788999999999998887544 7788999999999999
Q ss_pred CChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh
Q 010952 402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 454 (497)
Q Consensus 402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~ 454 (497)
+.+..+ +..+++|++|++++| .+++.. .+..+++|+.|++++|+++..
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cCcChh--hcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCeeecC
Confidence 887654 677899999999999 777654 378889999999999988763
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=7.6e-19 Score=160.99 Aligned_cols=194 Identities=28% Similarity=0.399 Sum_probs=160.8
Q ss_pred hCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCE
Q 010952 219 SALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKC 298 (497)
Q Consensus 219 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 298 (497)
..+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.... .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCE
Confidence 4567899999999987763 357889999999999998886544 888999999999999887643 5778899999
Q ss_pred eeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCc
Q 010952 299 LELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARI 378 (497)
Q Consensus 299 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 378 (497)
|++++|.+.... .+..+++|++|++++|.+..... +..+++|+.|++++|.++.... +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 999999887643 37889999999999998876543 7788999999999998887543 78899999999999998
Q ss_pred ChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952 379 TDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 429 (497)
Q Consensus 379 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 429 (497)
.+..+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++| .++.
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eeec
Confidence 87543 788999999999999998875 3778899999999999 5544
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=9.2e-20 Score=165.35 Aligned_cols=203 Identities=21% Similarity=0.166 Sum_probs=135.0
Q ss_pred hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952 242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 321 (497)
Q Consensus 242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 321 (497)
++.+++++.++++++.++... ..+ .++++.|++++|.+....+..+..+++|++|++++|.+..... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCC-CCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 456678888888887776432 111 2578888888887776666667778888888888877665322 25677778
Q ss_pred EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952 322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 401 (497)
Q Consensus 322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 401 (497)
+|++++|.+.. .+..+..+++|+.|++++|+++...+..+..+++|+.|++++|++....+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 88887776653 23344566777777777777766554556667777777777777666555555666777777777777
Q ss_pred CChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
++......+..+++|+.|++++| .++. ++..+...++|+.|++++|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~-ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQEN-SLYT-IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCC-cCCc-cChhhcccccCCeEEeCCCCcc
Confidence 76665555566677777777777 5553 3444555666777777766654
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=4.6e-19 Score=162.92 Aligned_cols=202 Identities=17% Similarity=0.098 Sum_probs=116.5
Q ss_pred CCCcEEEcCCCCCChhHhHhh--hcCCCCCEEEccCCCCChh----HHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCC
Q 010952 222 GSLFYLNLNRCQLSDDGCEKF--SKIGSLKVLNLGFNEITDE----CLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCN 295 (497)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 295 (497)
++|++|++++|.+.+..+..+ +.+++|++|++++|.+... ....+..+++|+.|++++|.+....+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555544444433 4455555555555554431 1122334556666666666555444445555666
Q ss_pred CCEeeccCcccchHH--H--HhhcCCCCCCEEeccCCCCChHHH--H-HhcCCCCCcEEEcCCCCCCHhHHHHhcCC---
Q 010952 296 LKCLELSDTQVGSSG--L--RHLSGLTNLESINLSFTGISDGSL--R-KLAGLSSLKSLNLDARQITDTGLAALTSL--- 365 (497)
Q Consensus 296 L~~L~l~~~~~~~~~--~--~~l~~~~~L~~L~l~~~~~~~~~~--~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--- 365 (497)
|++|++++|.+.... . ..+..+++|++|++++|.++.... . .+..+++|++|++++|.++...+..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 666666666543321 1 112456677777777776653221 1 23566777777777777766533334433
Q ss_pred CCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952 366 TGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 429 (497)
Q Consensus 366 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 429 (497)
++|+.|++++|.++.. |..+ +++|+.|++++|++++... +..+++|+.|++++| .+++
T Consensus 251 ~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp TTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSST-TTSC
T ss_pred CcCCEEECCCCCCCch-hhhh--cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCC-CCCC
Confidence 6788888888877743 3333 3788888888888876522 456788888888888 5543
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=2e-19 Score=163.15 Aligned_cols=201 Identities=24% Similarity=0.231 Sum_probs=169.2
Q ss_pred hhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCC
Q 010952 218 LSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLK 297 (497)
Q Consensus 218 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 297 (497)
+.++++++.++++++.+..... .+ .+.++.|++++|.+....+..+..+++|+.|++++|.+...... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4678899999999998876432 22 36899999999999877777789999999999999988765432 6789999
Q ss_pred EeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCC
Q 010952 298 CLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGAR 377 (497)
Q Consensus 298 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 377 (497)
+|++++|.+... +..+..+++|++|++++|.++...+..+.++++|+.|++++|+++......+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 999999988743 4456788999999999999887666778899999999999999988766677889999999999999
Q ss_pred cChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCC
Q 010952 378 ITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNC 425 (497)
Q Consensus 378 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 425 (497)
++...+..+..+++|+.|++++|.+... +..+...++|+.+++++|+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCC
Confidence 9987666778899999999999999966 4555567899999999994
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=4.2e-19 Score=157.84 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=84.9
Q ss_pred CcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcC
Q 010952 271 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLD 350 (497)
Q Consensus 271 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 350 (497)
+.+.++++++.+...+. . -.++++.|+++++.+.......+..+++|++|++++|.+....+..+.++++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~-~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS-G--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCS-C--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCC-C--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34555555554432221 1 12345555555555544444444555555555555555544433444445555555555
Q ss_pred CCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChh
Q 010952 351 ARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDK 430 (497)
Q Consensus 351 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 430 (497)
+|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++| .++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCcc
Confidence 55554433334444555555555555544443333444455555555555554443334444455555555555 44443
Q ss_pred HHHHhhcCCCCcEEEeeCCccC
Q 010952 431 TLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 431 ~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
.+..+..+++|+.|++++|++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 3334444445555555554443
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=8.8e-20 Score=161.10 Aligned_cols=197 Identities=17% Similarity=0.177 Sum_probs=115.5
Q ss_pred CcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcc-cchHHHHhhcCCCCCCEEeccC-CCCChHHHHHhcCCCCCcEEE
Q 010952 271 NLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-VGSSGLRHLSGLTNLESINLSF-TGISDGSLRKLAGLSSLKSLN 348 (497)
Q Consensus 271 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~ 348 (497)
+++.|+++++.+....+..+..+++|++|++++|. +.......+..+++|++|++++ |.+.......+.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444443333334444555555555553 4333333445555555555555 555443334455556666666
Q ss_pred cCCCCCCHhHHHHhcCCCCCc---EEEecCC-CcChHHHHHhhccCCCC-eeeecCCCCChhhHHhhhhcCCCCeecccC
Q 010952 349 LDARQITDTGLAALTSLTGLT---HLDLFGA-RITDSGAAYLRNFKNLR-SLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 423 (497)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 423 (497)
+++|.++... .+..+++|+ .|++++| .+....+..+..+++|+ .|++++|++.......+.. ++|++|++++
T Consensus 112 l~~n~l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSCC--CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcccc--ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 6665555422 144555665 7777777 66665555566677777 7777777777554444443 6777788877
Q ss_pred CCCCChhHHHHhhcC-CCCcEEEeeCCccChhHHHhhcCCcccceeecccC
Q 010952 424 NCNLTDKTLELISGL-TGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESC 473 (497)
Q Consensus 424 ~~~l~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 473 (497)
|+.++...+..+.++ ++|+.|++++|+++..... .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 733666555666777 7788888888877654322 5667777777766
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=3.8e-19 Score=157.04 Aligned_cols=196 Identities=15% Similarity=0.109 Sum_probs=94.2
Q ss_pred CCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCC-CChhHhHhhhcCCCCCEEEccC-CCCChhHHHHhhCCCCcCEEe
Q 010952 199 KLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQ-LSDDGCEKFSKIGSLKVLNLGF-NEITDECLVHLKGLTNLESLN 276 (497)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~ 276 (497)
++++|+++++.+....+..+..+++|++|++++|. +....+..|+.+++|++|++++ |.+....+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665444455566666666666664 5444444555555666666655 555433333344444444444
Q ss_pred CCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC---EEeccCC-CCChHHHHHhcCCCCCc-EEEcCC
Q 010952 277 LDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE---SINLSFT-GISDGSLRKLAGLSSLK-SLNLDA 351 (497)
Q Consensus 277 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~ 351 (497)
+++|.+...+ . +..+++|+ +|++++| .+.......+.++++|+ .|++++
T Consensus 112 l~~n~l~~lp-------------------------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNTGLKMFP-------------------------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEECCCSCC-------------------------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCCCCcccc-------------------------c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 4444333211 1 22333333 4555444 44433333344445555 555555
Q ss_pred CCCCHhHHHHhcCCCCCcEEEecCCC-cChHHHHHhhcc-CCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 352 RQITDTGLAALTSLTGLTHLDLFGAR-ITDSGAAYLRNF-KNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 352 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
|.++......+.. ++|+.|++++|+ ++...+..+..+ ++|+.|++++|.++..... .+++|+.|+++++
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 5444322222222 455555555553 444333444444 5555555555555443221 2345555555444
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=2.9e-18 Score=152.38 Aligned_cols=179 Identities=20% Similarity=0.245 Sum_probs=120.6
Q ss_pred CCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEecc
Q 010952 247 SLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLS 326 (497)
Q Consensus 247 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 326 (497)
..+.++++++.+.... ..+ .++++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p-~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVP-SGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCC-SCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccC-CCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556677666655322 111 2567777777777666555566677777777777777766555556677777777777
Q ss_pred CCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhh
Q 010952 327 FTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 406 (497)
Q Consensus 327 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 406 (497)
+|.+....+..+..+++|+.|++++|.++......+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77776555555667777777777777777655555666777777777777777665555667777777777777777666
Q ss_pred HHhhhhcCCCCeecccCCCCCCh
Q 010952 407 VKHIKDLSSLTLLNLSQNCNLTD 429 (497)
Q Consensus 407 ~~~~~~l~~L~~L~l~~~~~l~~ 429 (497)
+..+..+++|+.|++++| .+..
T Consensus 172 ~~~~~~l~~L~~L~l~~N-~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGN-QFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSC-CBCT
T ss_pred HHHHhCCCCCCEEEeeCC-ceeC
Confidence 556666777777777777 4443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=5.7e-17 Score=147.12 Aligned_cols=173 Identities=25% Similarity=0.312 Sum_probs=136.5
Q ss_pred CCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEE
Q 010952 268 GLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSL 347 (497)
Q Consensus 268 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 347 (497)
.+++|+.|+++++.+.... .+..+++|++|++++|.+..... +..+++|++|++++|.+... ..+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 4578899999988776542 36778899999999988876543 77888999999998887763 347788899999
Q ss_pred EcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCC
Q 010952 348 NLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNL 427 (497)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l 427 (497)
++++|.++.. ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++| .+
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i 190 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HI 190 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cC
Confidence 9998888774 4567788899999998888775 457788889999999888887754 777888888999888 77
Q ss_pred ChhHHHHhhcCCCCcEEEeeCCccChhH
Q 010952 428 TDKTLELISGLTGLVSLNVSNSRITSAG 455 (497)
Q Consensus 428 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 455 (497)
++. ..+..+++|+.|++++|+++...
T Consensus 191 ~~l--~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 191 SDL--RALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CBC--GGGTTCTTCSEEEEEEEEEECCC
T ss_pred CCC--hhhccCCCCCEEECcCCcccCCc
Confidence 764 34778888888988888877643
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=8.4e-17 Score=145.99 Aligned_cols=173 Identities=28% Similarity=0.351 Sum_probs=131.6
Q ss_pred hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952 242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 321 (497)
Q Consensus 242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 321 (497)
++.+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 34567888888888877653 236678888888888887776544 77788888888888887663 3477788888
Q ss_pred EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952 322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 401 (497)
Q Consensus 322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 401 (497)
+|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 888888877653 3567788888888888888764 456778888888888888877644 6778888888888888
Q ss_pred CChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952 402 LTDAGVKHIKDLSSLTLLNLSQNCNLTD 429 (497)
Q Consensus 402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 429 (497)
+++.. .+..+++|+.|++++| .++.
T Consensus 190 i~~l~--~l~~l~~L~~L~l~~n-~i~~ 214 (291)
T 1h6t_A 190 ISDLR--ALAGLKNLDVLELFSQ-ECLN 214 (291)
T ss_dssp CCBCG--GGTTCTTCSEEEEEEE-EEEC
T ss_pred CCCCh--hhccCCCCCEEECcCC-cccC
Confidence 88753 3677888888888888 4443
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=7.1e-17 Score=137.63 Aligned_cols=152 Identities=21% Similarity=0.296 Sum_probs=92.8
Q ss_pred CCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeee
Q 010952 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 397 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 397 (497)
++|++|+++++.+.+.. .+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45555555555554321 345556666666666655442 24556666777777776666555555666677777777
Q ss_pred cCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCCCCH
Q 010952 398 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 398 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 477 (497)
++|.+++..+..+..+++|++|++++|..+++.. .+..+++|+.|++++|++++.. .+..+++|+.|++++|++.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 7777766556666667777777777772255432 4667777777777777766632 56667777777777777643
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=3.9e-16 Score=133.04 Aligned_cols=152 Identities=22% Similarity=0.312 Sum_probs=101.0
Q ss_pred CCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEE
Q 010952 293 LCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLD 372 (497)
Q Consensus 293 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 372 (497)
+++|++|+++++.+.... .+..+++|++|++++|.+... ..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345666666666555322 355566666666666654432 2456677777777777777665555666777788888
Q ss_pred ecCCCcChHHHHHhhccCCCCeeeecCCC-CChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCcc
Q 010952 373 LFGARITDSGAAYLRNFKNLRSLEICGGG-LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 451 (497)
Q Consensus 373 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 451 (497)
+++|.+++..+..+..+++|++|++++|. ++... .+..+++|++|++++| .+++.. .+..+++|+.|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCccc
Confidence 87777777666677777888888888876 66552 5667788888888888 666632 577788888888888876
Q ss_pred Ch
Q 010952 452 TS 453 (497)
Q Consensus 452 ~~ 453 (497)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 54
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=4.2e-16 Score=154.92 Aligned_cols=187 Identities=25% Similarity=0.307 Sum_probs=142.8
Q ss_pred hCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcE
Q 010952 267 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKS 346 (497)
Q Consensus 267 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 346 (497)
..+++|+.|+++++.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 34578888899888776543 46778899999999988776543 77888999999999887653 35778888999
Q ss_pred EEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCC
Q 010952 347 LNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCN 426 (497)
Q Consensus 347 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 426 (497)
|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++| .
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~ 186 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-H 186 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-C
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-C
Confidence 99998888763 4577788899999999888775 457788889999999888887755 777888999999888 7
Q ss_pred CChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCccccee
Q 010952 427 LTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 468 (497)
Q Consensus 427 l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 468 (497)
+++. ..+..+++|+.|++++|++.......+..+..+..+
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l 226 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecccc
Confidence 7764 457788889999998888776544443433333333
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=3.2e-16 Score=155.78 Aligned_cols=173 Identities=28% Similarity=0.359 Sum_probs=142.5
Q ss_pred hhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCC
Q 010952 242 FSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLE 321 (497)
Q Consensus 242 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 321 (497)
+..+++|+.|+++++.+.... .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 456788999999988877532 47788999999999998876554 77899999999999988763 3677889999
Q ss_pred EEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCC
Q 010952 322 SINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGG 401 (497)
Q Consensus 322 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 401 (497)
.|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999988763 4577889999999999988875 567789999999999999887655 7889999999999999
Q ss_pred CChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952 402 LTDAGVKHIKDLSSLTLLNLSQNCNLTD 429 (497)
Q Consensus 402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 429 (497)
+.+. ..+..+++|+.|+|++| .+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred CCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 8876 35778899999999998 5544
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=5.6e-17 Score=139.74 Aligned_cols=161 Identities=18% Similarity=0.171 Sum_probs=85.4
Q ss_pred CCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEec
Q 010952 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 374 (497)
Q Consensus 295 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 374 (497)
++++|+++++.+.......+..+++|++|++++|.+.......+..+++|++|++++|.++......+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444555555555554443333334455555555555555554433344555666666666
Q ss_pred CCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChh
Q 010952 375 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSA 454 (497)
Q Consensus 375 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~ 454 (497)
+|.++...+..+..+++|++|++++|.+++.....+..+++|++|++++| .+. ..+++|+.|+++.|.+++.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC-Cee-------cCCCCHHHHHHHHHhCCce
Confidence 66655544444555666666666666666554444555666666666666 222 2345666666666666655
Q ss_pred HHHhhcCCc
Q 010952 455 GLRHLKPLK 463 (497)
Q Consensus 455 ~~~~l~~~~ 463 (497)
++..++.++
T Consensus 181 ip~~~~~l~ 189 (208)
T 2o6s_A 181 VRNSAGSVA 189 (208)
T ss_dssp BBCTTSSBC
T ss_pred eeccCcccc
Confidence 555544443
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=2.5e-16 Score=135.70 Aligned_cols=173 Identities=17% Similarity=0.129 Sum_probs=135.2
Q ss_pred CEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCC
Q 010952 297 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 376 (497)
Q Consensus 297 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 376 (497)
+.++..++.+.... ....++|++|++++|.+.......+.++++|+.|++++|.++......+..+++|+.|++++|
T Consensus 10 ~~v~c~~~~l~~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45555555444322 123468999999999888666666788899999999999888765566778899999999999
Q ss_pred CcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHH
Q 010952 377 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGL 456 (497)
Q Consensus 377 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 456 (497)
.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++| .+++..+..+..+++|+.|++++|++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec---
Confidence 988766666788899999999999998876666788899999999999 7877666667888999999999997653
Q ss_pred HhhcCCcccceeecccCCCCHHHH
Q 010952 457 RHLKPLKNLRSLTLESCKVTANDI 480 (497)
Q Consensus 457 ~~l~~~~~L~~L~l~~~~~~~~~~ 480 (497)
.+++|+.|+++.|.++....
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBB
T ss_pred ----CCCCHHHHHHHHHhCCceee
Confidence 46788888888887765433
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=3.5e-16 Score=146.74 Aligned_cols=155 Identities=22% Similarity=0.280 Sum_probs=69.9
Q ss_pred CCEEeccCCCCChHHHHHhc-CCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeec
Q 010952 320 LESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEIC 398 (497)
Q Consensus 320 L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 398 (497)
++.|++++|.++......+. ++++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444333323333 44444444444444444333334444444444444444444333334444555555555
Q ss_pred CCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHh---hcCCCCcEEEeeCCccChhHHHhhcCCcc--cceeecccC
Q 010952 399 GGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELI---SGLTGLVSLNVSNSRITSAGLRHLKPLKN--LRSLTLESC 473 (497)
Q Consensus 399 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l---~~~~~L~~L~l~~~~l~~~~~~~l~~~~~--L~~L~l~~~ 473 (497)
+|.+....+..+..+++|+.|+|++| .++......+ ..+++|+.|++++|.++......+..++. ++.|++++|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 55544444444444455555555555 4443322222 33455555555555555444444444444 255555555
Q ss_pred CC
Q 010952 474 KV 475 (497)
Q Consensus 474 ~~ 475 (497)
++
T Consensus 200 ~~ 201 (361)
T 2xot_A 200 PL 201 (361)
T ss_dssp CE
T ss_pred Cc
Confidence 44
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=3.1e-16 Score=135.95 Aligned_cols=133 Identities=21% Similarity=0.310 Sum_probs=74.9
Q ss_pred CCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeee
Q 010952 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 397 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 397 (497)
++++.|++++|.+.......+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45666666666655544444555566666666666655544455555566666666666555544444455555666666
Q ss_pred cCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCcc
Q 010952 398 CGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 451 (497)
Q Consensus 398 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 451 (497)
++|.+....+..+..+++|+.|+|++| .++...+..+..+++|+.|++++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 665555554555555555555555555 45544444455555555555555554
No 105
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=136.13 Aligned_cols=185 Identities=22% Similarity=0.283 Sum_probs=130.3
Q ss_pred CCCCCEeeccCcccchHHHHhhc-----CCCCCCEEeccCCCCChHHHHHhc-CCCCCcEEEcCCCCCCHhHHHHhc---
Q 010952 293 LCNLKCLELSDTQVGSSGLRHLS-----GLTNLESINLSFTGISDGSLRKLA-GLSSLKSLNLDARQITDTGLAALT--- 363 (497)
Q Consensus 293 ~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~--- 363 (497)
.++|+.|++++|.++......+. ..++|++|++++|.+++.....+. .+++|+.|++++|.+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788999999888765444432 236899999999988876554443 456888999999988877665542
Q ss_pred --CCCCCcEEEecCCCcChHHHHH----hhccCCCCeeeecCCCCChhhHH----hhhhcCCCCeecccCCCCCChhHHH
Q 010952 364 --SLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAGVK----HIKDLSSLTLLNLSQNCNLTDKTLE 433 (497)
Q Consensus 364 --~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~l~~~~~~ 433 (497)
..++|++|++++|.+++..... +..+++|++|++++|.+++.+.. .+...++|++|+|++| .+++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence 4678999999999887654433 46788899999999888876643 3455678889999888 78875443
Q ss_pred ----HhhcCCCCcEEEeeCCccChhHHHhhcCC---c--ccceee--cccCCCCHH
Q 010952 434 ----LISGLTGLVSLNVSNSRITSAGLRHLKPL---K--NLRSLT--LESCKVTAN 478 (497)
Q Consensus 434 ----~l~~~~~L~~L~l~~~~l~~~~~~~l~~~---~--~L~~L~--l~~~~~~~~ 478 (497)
.+..+++|++|++++|++++.....+... . .|+.+. +..+.+++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 44467888999999888887776665332 2 277777 777777665
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=6.3e-16 Score=134.01 Aligned_cols=152 Identities=19% Similarity=0.267 Sum_probs=89.2
Q ss_pred CEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHH-HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecC
Q 010952 297 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSL-RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFG 375 (497)
Q Consensus 297 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 375 (497)
+.++++++.++... .. -.+.+++|++++|.+....+ ..+.++++|+.|++++|.++......+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP-~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-EH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCC-SC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCc-cC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46666666654421 11 12345667777666654422 2345566666666666666655444555666666666666
Q ss_pred CCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 376 ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 376 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666555555556666666666666666655555555666666666666 555555555556666666666666554
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=3.1e-16 Score=145.22 Aligned_cols=285 Identities=13% Similarity=0.134 Sum_probs=122.2
Q ss_pred CCCCCEEEeeccccCchhHHhhhc-CCCCcEEEccCCCCC--hHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhc-----
Q 010952 173 LTNLKSLQISCSKVTDSGIAYLKG-LQKLTLLNLEGCPVT--AACLDSLSALGSLFYLNLNRCQLSDDGCEKFSK----- 244 (497)
Q Consensus 173 l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~----- 244 (497)
+++++.|.+.+. +.......+.. +++|+.|++++|++. .... +..+.++.+.+..+.+ ....|..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccccc---CHHHhccccccc
Confidence 446777777653 33344445554 677777777777664 1110 1111223333333322 1233444
Q ss_pred ---CCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCccc----chHHHHhhcCC
Q 010952 245 ---IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQV----GSSGLRHLSGL 317 (497)
Q Consensus 245 ---l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~----~~~~~~~l~~~ 317 (497)
+++|+.+++.. .+.......|..+++|+.+.+..+.+.......|..+.++..+....... .......+..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 66666666655 44444444556666666666666555444444444444444444332110 00001112223
Q ss_pred CCCC-EEeccCCCC-ChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhc-CCCCCcEEEecCCCcChHHHHHhhccCCCCe
Q 010952 318 TNLE-SINLSFTGI-SDGSLRKLAGLSSLKSLNLDARQITDTGLAALT-SLTGLTHLDLFGARITDSGAAYLRNFKNLRS 394 (497)
Q Consensus 318 ~~L~-~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 394 (497)
..|+ .+.+..... .......-....+++.+.+.+. +.......+. .+++|+.+++.+|.++.....+|..|++|+.
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 3333 233322111 0101111112233444444332 1111111111 2445555555554444444444444555555
Q ss_pred eeecCCCCChhhHHhhhhcCCCC-eecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceee
Q 010952 395 LEICGGGLTDAGVKHIKDLSSLT-LLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLT 469 (497)
Q Consensus 395 L~l~~~~l~~~~~~~~~~l~~L~-~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 469 (497)
+++.+| +..++...|..+++|+ .+++.+ .++.....++.+|++|+.++++++.++.....+|..+++|+.++
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 555444 4444444444445554 455444 23333344444455555555544444444444444444454443
No 108
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=3.1e-16 Score=145.23 Aligned_cols=289 Identities=16% Similarity=0.087 Sum_probs=198.7
Q ss_pred CCCCcEEEccCCCCChHHHHHhhC-CCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhC-------
Q 010952 197 LQKLTLLNLEGCPVTAACLDSLSA-LGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKG------- 268 (497)
Q Consensus 197 l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~------- 268 (497)
+.+++.|.+++.- .......+.. +++|+.|++++|.+...... -+.++.+..+.+..+.+. ...|..
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMANFVP---AYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCc-cccccccccccccccccC---HHHhccccccccc
Confidence 3467888888752 2223344555 78899999998887611110 112222444555555443 234667
Q ss_pred -CCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCC----CChHHHHHhcCCCC
Q 010952 269 -LTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTG----ISDGSLRKLAGLSS 343 (497)
Q Consensus 269 -~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~l~~~~~ 343 (497)
+++|+.+.+.. .+......+|..+++|+.+++..+.+.......+..+.++..+...... .......++.++..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 89999999988 7777777788889999999999887766656667776666666654421 11111122345556
Q ss_pred Cc-EEEcCCCCC-CHhHHHHhcCCCCCcEEEecCCCcChHHHHHh-hccCCCCeeeecCCCCChhhHHhhhhcCCCCeec
Q 010952 344 LK-SLNLDARQI-TDTGLAALTSLTGLTHLDLFGARITDSGAAYL-RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 420 (497)
Q Consensus 344 L~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 420 (497)
|+ .+.+..... ............+++.+.+.+.-. ......+ ..+++|+.+++.+|.++.+....|..|++|++++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeec-HHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 66 444443221 111111111356777787776633 3333333 4599999999999999999888999999999999
Q ss_pred ccCCCCCChhHHHHhhcCCCCc-EEEeeCCccChhHHHhhcCCcccceeecccCCCCHHHHHHHhhcCCCCCccCCCC
Q 010952 421 LSQNCNLTDKTLELISGLTGLV-SLNVSNSRITSAGLRHLKPLKNLRSLTLESCKVTANDIKRLQSRDLPNLVSFRPE 497 (497)
Q Consensus 421 l~~~~~l~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~p~L~~l~~~ 497 (497)
+.+| ++.....++.++++|+ .+++.+ .++.....+|..|++|+.+++.++.++..+-..+. .|++|+.++.+
T Consensus 257 l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~--~~~~L~~ly~k 329 (329)
T 3sb4_A 257 LPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG--NGVPSKLIYKK 329 (329)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC--TTCCCCEEECC
T ss_pred CCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc--CCcchhhhccC
Confidence 9997 7777778899999999 999998 77777778999999999999999999988887776 89999988753
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=1.2e-15 Score=133.20 Aligned_cols=153 Identities=24% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEec
Q 010952 295 NLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLF 374 (497)
Q Consensus 295 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 374 (497)
..+.++.+++.+.... . ...++|++|++++|.+....+..+.++++|+.|++++|.+.......+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~~ip-~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVP-A--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCC-S--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccC-C--CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3456666665544332 1 123567777777776665545555666666666666666655444445556666666666
Q ss_pred CCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 375 GARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 375 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
+|.++...+..+..+++|+.|++++|.+... +..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6666655444455566666666666666543 334455566666666666 555444444555566666666666554
No 110
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=3.4e-14 Score=132.87 Aligned_cols=185 Identities=23% Similarity=0.359 Sum_probs=137.2
Q ss_pred CCCcCEEeCCCCCCCHhHHHHHhC-----CCCCCEeeccCcccchHHHHhhc-CCCCCCEEeccCCCCChHHHHHhc---
Q 010952 269 LTNLESLNLDSCGIGDEGLVNLTG-----LCNLKCLELSDTQVGSSGLRHLS-GLTNLESINLSFTGISDGSLRKLA--- 339 (497)
Q Consensus 269 ~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~--- 339 (497)
.+.|+.|++++|.++......+.. .++|++|++++|.++......+. .+++|++|++++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 367899999999988766655543 26899999999988776544443 457899999999999876665542
Q ss_pred --CCCCCcEEEcCCCCCCHhHHHHh----cCCCCCcEEEecCCCcChHH----HHHhhccCCCCeeeecCCCCChhhHHh
Q 010952 340 --GLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARITDSG----AAYLRNFKNLRSLEICGGGLTDAGVKH 409 (497)
Q Consensus 340 --~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~~~~ 409 (497)
..++|+.|++++|.+++.+...+ ..+++|++|++++|.+++.. +..+..+++|++|++++|.+++.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 46889999999999887655443 57889999999999988765 344567889999999999998876554
Q ss_pred h----hhcCCCCeecccCCCCCChhHHHHhhcCCC-----CcEEE--eeCCccChh
Q 010952 410 I----KDLSSLTLLNLSQNCNLTDKTLELISGLTG-----LVSLN--VSNSRITSA 454 (497)
Q Consensus 410 ~----~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~-----L~~L~--l~~~~l~~~ 454 (497)
+ ...++|++|+|++| .+++.....+..... |+.+. +..+.+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 4 34689999999999 788887777764422 66666 666666554
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1.6e-15 Score=142.31 Aligned_cols=173 Identities=18% Similarity=0.178 Sum_probs=99.2
Q ss_pred CEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHh-CCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccC
Q 010952 249 KVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT-GLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 327 (497)
Q Consensus 249 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 327 (497)
++++++++.+... |..+ .+.++.|++++|.+.......+. .+++|++|++++|.+.......+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4566666655532 1111 23466777777766655544454 566677777766666655445556666666666666
Q ss_pred CCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHh---hccCCCCeeeecCCCCCh
Q 010952 328 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYL---RNFKNLRSLEICGGGLTD 404 (497)
Q Consensus 328 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~l~~ 404 (497)
|.+.......+.++++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+ ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66655444455566666666666666665544555566666666666666555433333 345666666666666665
Q ss_pred hhHHhhhhcCC--CCeecccCC
Q 010952 405 AGVKHIKDLSS--LTLLNLSQN 424 (497)
Q Consensus 405 ~~~~~~~~l~~--L~~L~l~~~ 424 (497)
.....+..++. ++.|++++|
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSS
T ss_pred cCHHHhhhccHhhcceEEecCC
Confidence 55445555544 255666665
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.9e-15 Score=141.21 Aligned_cols=239 Identities=18% Similarity=0.119 Sum_probs=147.5
Q ss_pred eEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEecc
Q 010952 54 LSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLE 133 (497)
Q Consensus 54 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (497)
++++-++++++ .+|..+ .+++++|++++| .+......+|.++++|++|++++|.......+.+|.++++++++...
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46677777765 344433 357888888887 67766566788888888888888875443444567778887766555
Q ss_pred Cccccccc-cccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeec-cccCchhHHhhhcC-CCCcEEEccCCCC
Q 010952 134 RCTRIHGG-LVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISC-SKVTDSGIAYLKGL-QKLTLLNLEGCPV 210 (497)
Q Consensus 134 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 210 (497)
++..+... +..+..+++|++|++++|. +.......+....++..+++.+ +.+.......+..+ ..++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 44444444 4567788888888888754 3333333444555666777754 44554444445554 3577788888877
Q ss_pred ChHHHHHhhCCCCCcEEEcCC-CCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCC-CCCHhHHH
Q 010952 211 TAACLDSLSALGSLFYLNLNR-CQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC-GIGDEGLV 288 (497)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~ 288 (497)
... +.......+|+.+.+.+ +.+.......|+.+++|++|++++|.++..... .+.+|+.|.+.++ .+... +
T Consensus 167 ~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~l-P- 240 (350)
T 4ay9_X 167 QEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKL-P- 240 (350)
T ss_dssp CEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCC-C-
T ss_pred cCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcC-C-
Confidence 653 33333445777787764 445554445677778888888888877643322 2455666665444 22221 1
Q ss_pred HHhCCCCCCEeeccC
Q 010952 289 NLTGLCNLKCLELSD 303 (497)
Q Consensus 289 ~l~~~~~L~~L~l~~ 303 (497)
.+..+++|+.+++..
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 245566677776654
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=1.2e-15 Score=132.30 Aligned_cols=131 Identities=23% Similarity=0.254 Sum_probs=84.3
Q ss_pred CCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEe
Q 010952 294 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 373 (497)
Q Consensus 294 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 373 (497)
++++.|++++|.+.......+..+++|++|++++|.+....+..+.++++|+.|++++|.++......+..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45666666666666554445566666677777666666555555666666777777666666554444556666777777
Q ss_pred cCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 374 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 766666655555666666777777766666665555666666666766666
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=1.1e-15 Score=136.44 Aligned_cols=169 Identities=23% Similarity=0.292 Sum_probs=130.9
Q ss_pred CCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEc
Q 010952 270 TNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNL 349 (497)
Q Consensus 270 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 349 (497)
.++..+.+..+.+.+.. .+..+++|++|++++|.+.... .+..+++|++|++++|.+.+..+ +.++++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555666666665433 3566788999999998877543 57778999999999998876554 788899999999
Q ss_pred CCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952 350 DARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 429 (497)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 429 (497)
++|.++... .+.. ++|+.|++++|.+++. ..+..+++|+.|++++|.+++.. .+..+++|++|++++| .+++
T Consensus 93 ~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N-~i~~ 164 (263)
T 1xeu_A 93 NRNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN-EITN 164 (263)
T ss_dssp CSSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTS-CCCB
T ss_pred CCCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCC-cCcc
Confidence 999887642 2334 8899999999988874 34778899999999999888763 5777889999999998 7777
Q ss_pred hHHHHhhcCCCCcEEEeeCCccChh
Q 010952 430 KTLELISGLTGLVSLNVSNSRITSA 454 (497)
Q Consensus 430 ~~~~~l~~~~~L~~L~l~~~~l~~~ 454 (497)
. ..+..+++|+.|++++|+++..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 6677888999999999887764
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=2.3e-15 Score=130.44 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=93.8
Q ss_pred CEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHH-HHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCC
Q 010952 273 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSG-LRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDA 351 (497)
Q Consensus 273 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 351 (497)
+.++++++.++..+. . -.+.+++|++++|.+.... ...+..+++|++|++++|.+....+..+.++++|+.|++++
T Consensus 14 ~~l~~s~n~l~~iP~-~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-H--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCS-C--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCcc-C--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666665543221 1 1234567777776665542 23355666777777777766655555566667777777777
Q ss_pred CCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 352 RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 352 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 7666655555666677777777777766665566666677777777777776665666666677777777776
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=5.7e-15 Score=145.10 Aligned_cols=188 Identities=15% Similarity=0.139 Sum_probs=134.1
Q ss_pred CCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEec
Q 010952 246 GSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINL 325 (497)
Q Consensus 246 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 325 (497)
.+++.|+++++.+.. .+..+ .++|+.|++++|.+...+ ..+++|++|++++|.++.. +. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEEC
Confidence 389999999888775 22222 378999999988877433 4578899999988887763 22 332 8888999
Q ss_pred cCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChh
Q 010952 326 SFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 405 (497)
Q Consensus 326 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 405 (497)
++|.++... . .+++|+.|++++|.++..+. .+++|+.|++++|.++.. |. +. ++|+.|++++|.++.+
T Consensus 128 s~N~l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLP-E---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCC-C---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCCch
Confidence 888876522 2 57888888888888876322 567888888888887774 33 43 7888888888888755
Q ss_pred hHHhhhhcCCC-------CeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCC
Q 010952 406 GVKHIKDLSSL-------TLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPL 462 (497)
Q Consensus 406 ~~~~~~~l~~L-------~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~ 462 (497)
.. +.. +| +.|++++| .++. +|..+..+++|+.|++++|++++..+..+..+
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCREN-RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC--CC----------CCEEEECCSS-CCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCC-ccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 33 332 56 88888888 6775 45566678888888888888888777666543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=3.6e-15 Score=133.03 Aligned_cols=169 Identities=23% Similarity=0.342 Sum_probs=130.9
Q ss_pred CCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEe
Q 010952 245 IGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESIN 324 (497)
Q Consensus 245 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 324 (497)
+.++..++++.+.+.+.. .+..+++|+.|++++|.+.... .+..+++|++|++++|.+..... +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555666767666433 3456788999999998876543 57788999999999998877544 78889999999
Q ss_pred ccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCCh
Q 010952 325 LSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTD 404 (497)
Q Consensus 325 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 404 (497)
+++|.+.... .+.. ++|+.|++++|.++.. ..+..+++|+.|++++|++++.. .+..+++|+.|++++|.+.+
T Consensus 92 L~~N~l~~l~--~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLN--GIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCT--TCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcC--cccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence 9999877532 2333 8899999999988874 35778899999999999988752 57888999999999999887
Q ss_pred hhHHhhhhcCCCCeecccCCCCCCh
Q 010952 405 AGVKHIKDLSSLTLLNLSQNCNLTD 429 (497)
Q Consensus 405 ~~~~~~~~l~~L~~L~l~~~~~l~~ 429 (497)
. ..+..+++|+.|++++| .++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N-~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQ-KCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEE-EEEC
T ss_pred h--HHhccCCCCCEEeCCCC-cccC
Confidence 7 56777899999999998 5544
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=2.7e-15 Score=147.36 Aligned_cols=189 Identities=21% Similarity=0.138 Sum_probs=146.6
Q ss_pred CCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeec
Q 010952 222 GSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLEL 301 (497)
Q Consensus 222 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 301 (497)
.+++.|++++|.+.+ .+..+ .++|+.|++++|.+... + ..+++|+.|++++|.+...+. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch--hhc--CCCEEEC
Confidence 489999999998876 33333 37899999999998843 3 457899999999998876433 333 8999999
Q ss_pred cCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChH
Q 010952 302 SDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDS 381 (497)
Q Consensus 302 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 381 (497)
++|.+.... . .+++|+.|++++|.++.... .+++|+.|++++|.++..+. +. ++|+.|++++|.++..
T Consensus 128 s~N~l~~lp-~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTMLP-E---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCCCC-C---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCch
Confidence 999887632 2 67899999999998875322 57899999999999887433 44 8999999999998854
Q ss_pred HHHHhhccCCC-------CeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCC
Q 010952 382 GAAYLRNFKNL-------RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 439 (497)
Q Consensus 382 ~~~~l~~~~~L-------~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~ 439 (497)
.. +.. +| +.|++++|.++.+ +..+..+++|+.|+|++| .+++..|..+..+.
T Consensus 196 p~--~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA--VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDN-PLSSRIRESLSQQT 254 (571)
T ss_dssp CC--CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSS-SCCHHHHHHHHHHH
T ss_pred hh--HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCC-cCCCcCHHHHHHhh
Confidence 32 322 66 9999999999976 555666999999999999 89988888877543
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=1.4e-15 Score=142.04 Aligned_cols=225 Identities=15% Similarity=0.082 Sum_probs=162.4
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCCCCCCEEEc-CCCCCCChHHHHHHhCCCCCC
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGLSNLTSLSF-RRNNAITAQGMKAFAGLINLV 128 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~l~~l~~L~ 128 (497)
.+++++|+|+++.++.....+|+++++|++|++++|.........+|.++++++++.. .++. +....+..|..+++|+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhccccc
Confidence 3689999999999975444568999999999999984334344567888988887554 4555 5666677899999999
Q ss_pred EEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCC-CCCEEEeeccccCchhHHhhhcCCCCcEEEccC
Q 010952 129 KLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLT-NLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEG 207 (497)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 207 (497)
+|++++|.........+....++..+++.++..+.......+..+. .++.|++++|.++......+ ...+|+++.+.+
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~ 186 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSD 186 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTT
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhcc
Confidence 9999997533333344556678889999877767665556666654 68899999999986554444 346799999986
Q ss_pred -CCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCC
Q 010952 208 -CPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSC 280 (497)
Q Consensus 208 -~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 280 (497)
+.+.......|..+++|+.|++++|.+....... +.+|+.|.+..+.-....+ .+..+++|+.+++.+.
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 5665544457789999999999999988765444 4556666654442221222 3667889999998753
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=6.9e-15 Score=128.37 Aligned_cols=130 Identities=23% Similarity=0.229 Sum_probs=76.0
Q ss_pred CCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEe
Q 010952 294 CNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDL 373 (497)
Q Consensus 294 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 373 (497)
++|++|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.++......+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45666666666655544455555666666666666655444444555666666666666665544444555666666666
Q ss_pred cCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 374 FGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
++|.+... |..+..+++|+.|++++|.+.......+..+++|+.|++++|
T Consensus 120 s~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 120 CCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 66665532 344455666666666666666554444555666666666666
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=2e-14 Score=116.39 Aligned_cols=127 Identities=26% Similarity=0.270 Sum_probs=70.6
Q ss_pred CCCcEEEcCCCCCC-HhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeec
Q 010952 342 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 420 (497)
Q Consensus 342 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 420 (497)
++++.|++++|.++ ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555554444 11222334455555555555555543 3345556666666666666554444555566666666
Q ss_pred ccCCCCCChh-HHHHhhcCCCCcEEEeeCCccChhHH---HhhcCCcccceeecc
Q 010952 421 LSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLE 471 (497)
Q Consensus 421 l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l~ 471 (497)
+++| .+++. .+..+..+++|+.|++++|++++... ..+..+++|+.|+++
T Consensus 95 ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666 55553 23556666666667666666665443 355666777777665
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.48 E-value=1.4e-14 Score=119.91 Aligned_cols=132 Identities=24% Similarity=0.248 Sum_probs=83.0
Q ss_pred CCCcEEEcCCCCCC-HhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeec
Q 010952 342 SSLKSLNLDARQIT-DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLN 420 (497)
Q Consensus 342 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 420 (497)
++|+.|++++|.++ ...+..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 11222334556666666666666554 4455666777777777776664455555567777777
Q ss_pred ccCCCCCChhH-HHHhhcCCCCcEEEeeCCccChhHH---HhhcCCcccceeecccCCCC
Q 010952 421 LSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTLESCKVT 476 (497)
Q Consensus 421 l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l~~~~~~ 476 (497)
+++| .+++.. +..+..+++|+.|++++|++++... ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777 566532 2566677777777777777766543 46677778888888877654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=5e-14 Score=114.04 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=66.3
Q ss_pred CCCCEEeccCCCCC-hHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeee
Q 010952 318 TNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLE 396 (497)
Q Consensus 318 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 396 (497)
++|+.|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444443 12222334455555555555555443 3444555666666666655554444445566666666
Q ss_pred ecCCCCChhh-HHhhhhcCCCCeecccCCCCCChhHH---HHhhcCCCCcEEEee
Q 010952 397 ICGGGLTDAG-VKHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVS 447 (497)
Q Consensus 397 l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~---~~l~~~~~L~~L~l~ 447 (497)
+++|.+++.. +..+..+++|++|++++| .+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 6666665542 244555666666666666 4544333 345556666666554
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=3.3e-14 Score=117.76 Aligned_cols=134 Identities=20% Similarity=0.193 Sum_probs=90.4
Q ss_pred CCCCCEEeccCCCCC-hHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCee
Q 010952 317 LTNLESINLSFTGIS-DGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSL 395 (497)
Q Consensus 317 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 395 (497)
.++|++|++++|.+. ...+..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 355666666666554 22233345566677777777766654 455667778888888877776555566667888888
Q ss_pred eecCCCCChhhH-HhhhhcCCCCeecccCCCCCChhHH---HHhhcCCCCcEEEeeCCccCh
Q 010952 396 EICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTL---ELISGLTGLVSLNVSNSRITS 453 (497)
Q Consensus 396 ~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~---~~l~~~~~L~~L~l~~~~l~~ 453 (497)
++++|.+++... ..+..+++|++|++++| .++...+ ..+..+++|+.|++++|.+.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 888888777532 56667788888888888 5655443 467778888888888887654
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=1.3e-15 Score=150.58 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=49.8
Q ss_pred CcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEee
Q 010952 368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVS 447 (497)
Q Consensus 368 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~ 447 (497)
|+.|++++|.+++. |. +..+++|+.|++++|.++.. |..++.+++|+.|+|++| .++. +| .++.+++|+.|+++
T Consensus 443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N-~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDN-ALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCCCC-cC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCC-CCCC-Cc-ccCCCCCCcEEECC
Confidence 44455555544442 22 44445555555555554432 334444555555555555 4443 22 44455555555555
Q ss_pred CCccChhH-HHhhcCCcccceeecccCCCCH
Q 010952 448 NSRITSAG-LRHLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 448 ~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~ 477 (497)
+|.+++.. +..+..+++|+.|++++|+++.
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 55554443 4444555555555555554433
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=1.4e-15 Score=150.36 Aligned_cols=197 Identities=19% Similarity=0.169 Sum_probs=151.6
Q ss_pred hCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcc-------------cchHHHHhhcCCCCCCEEe-ccCCCCCh
Q 010952 267 KGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQ-------------VGSSGLRHLSGLTNLESIN-LSFTGISD 332 (497)
Q Consensus 267 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~~ 332 (497)
..+++|+.|+++++.+. ..|..++.+++|+.|++.++. .....+..++.+++|+.|+ ++.+.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45789999999998775 456778888899999986653 2334445566777888887 45443221
Q ss_pred HHHH-----HhcC--CCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChh
Q 010952 333 GSLR-----KLAG--LSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDA 405 (497)
Q Consensus 333 ~~~~-----~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 405 (497)
.... .+.. ...|+.|++++|.++..+ .+..+++|+.|++++|.++. .|..+..+++|+.|++++|.+++.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp--~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCc--CccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCCC
Confidence 1110 1111 246999999999998753 38889999999999999984 467889999999999999999986
Q ss_pred hHHhhhhcCCCCeecccCCCCCChhH-HHHhhcCCCCcEEEeeCCccChhHH---HhhcCCcccceeec
Q 010952 406 GVKHIKDLSSLTLLNLSQNCNLTDKT-LELISGLTGLVSLNVSNSRITSAGL---RHLKPLKNLRSLTL 470 (497)
Q Consensus 406 ~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~L~l 470 (497)
+ .+..+++|+.|++++| .++... |..+..+++|+.|++++|++++..+ ..+..+|+|+.|++
T Consensus 502 -p-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 -D-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -G-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -c-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 4 7888999999999999 888876 8899999999999999999887543 23345888988864
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=1.6e-13 Score=114.39 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=79.9
Q ss_pred CCCCCcEEEcCCCCCCHhHHHHhcC-CCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCe
Q 010952 340 GLSSLKSLNLDARQITDTGLAALTS-LTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTL 418 (497)
Q Consensus 340 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 418 (497)
++++|+.|++++|.++.. ..+.. .++|+.|++++|.+++. ..+..+++|+.|++++|.++...+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344555555555554432 11222 23666666666666553 34556666777777777666654444466677777
Q ss_pred ecccCCCCCChhHH-HHhhcCCCCcEEEeeCCccChhHHH---hhcCCcccceeecccCCCCHHH
Q 010952 419 LNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR---HLKPLKNLRSLTLESCKVTAND 479 (497)
Q Consensus 419 L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~L~~L~l~~~~~~~~~ 479 (497)
|++++| .+++... ..+..+++|+.|++++|+++..... .+..+++|+.|++++|...+..
T Consensus 93 L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~ 156 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156 (176)
T ss_dssp EECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred EECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHH
Confidence 777777 5654321 2566777777777777776643322 3667777888888777655543
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=1.4e-13 Score=129.90 Aligned_cols=240 Identities=13% Similarity=0.134 Sum_probs=140.4
Q ss_pred CCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeecc
Q 010952 223 SLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELS 302 (497)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 302 (497)
+|+.+.+..+ +......+|.. .+|+.+.+.. .+.......|..|++|+.+.+..+.+.......|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4444444433 33333333433 2455555543 22222233455555555555555544444333343 3556666654
Q ss_pred CcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcC---
Q 010952 303 DTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARIT--- 379 (497)
Q Consensus 303 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--- 379 (497)
.+ +.......+..+++|+.+.+..+ +......++.+ .+|+.+.+.. .++..+..+|..|++|+.+.+.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 32 33333344556666666666543 33333333444 5677777733 344444566777778888877776543
Q ss_pred --hHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHH
Q 010952 380 --DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLR 457 (497)
Q Consensus 380 --~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~ 457 (497)
.....++..|++|+.+.+. +.+..++...|..|.+|+.+.|.++ ++.....++.++ +|+.+.+.+|........
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 3345567778888888887 3466666677788888888888664 666666677788 888888888876665556
Q ss_pred hhcCCc-ccceeecccCC
Q 010952 458 HLKPLK-NLRSLTLESCK 474 (497)
Q Consensus 458 ~l~~~~-~L~~L~l~~~~ 474 (497)
.|..++ +++.|.+-.+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SCCCSCTTCCEEEECGGG
T ss_pred cccCCCCCccEEEeCHHH
Confidence 666664 67888887654
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.37 E-value=4.3e-13 Score=126.67 Aligned_cols=128 Identities=11% Similarity=0.157 Sum_probs=66.9
Q ss_pred CCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCC-----HhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCC
Q 010952 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQIT-----DTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNL 392 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 392 (497)
.+|+.+.+.. .+......++.++++|+.+.+.++... ..+..+|..|++|+.+.+.+ .+......++..|.+|
T Consensus 248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 3444444422 233333334445555555555444332 22234555666666666663 3444444556666666
Q ss_pred CeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCC-CCcEEEeeCCc
Q 010952 393 RSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT-GLVSLNVSNSR 450 (497)
Q Consensus 393 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~-~L~~L~l~~~~ 450 (497)
+.+.+..+ +..+....|..+ +|+.+++.+| .........+.+++ +++.|.+..+.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 66666433 555555566666 6777777666 44443334444553 56777776554
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=1.1e-13 Score=117.20 Aligned_cols=128 Identities=17% Similarity=0.235 Sum_probs=78.8
Q ss_pred CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHH-HhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecC
Q 010952 321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLA-ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 399 (497)
Q Consensus 321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 399 (497)
++++++++.+.... ..+ .++++.|++++|.++..... .+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56666666654321 111 23667777777766654332 255666677777777766665555666666677777776
Q ss_pred CCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 400 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 400 ~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
|.+.+..+..+..+++|++|++++| .++...+..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 6666665555666666666666666 566655556666666666666666655
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.37 E-value=1.6e-13 Score=130.30 Aligned_cols=237 Identities=16% Similarity=0.137 Sum_probs=121.8
Q ss_pred hhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCCEEEccCCCCChhHHHHhhCCCCc
Q 010952 193 YLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLKVLNLGFNEITDECLVHLKGLTNL 272 (497)
Q Consensus 193 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 272 (497)
.+.++++|+.+.+.++. ......+|.++.+|+.+.+..+ +.......|..+..|+.+.+..+.... ........+|
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL--GDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTTCCC
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEe--ehhhcccCCC
Confidence 34455555555554331 1111233445555555555433 222223344455555555443332110 1112233456
Q ss_pred CEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCC
Q 010952 273 ESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDAR 352 (497)
Q Consensus 273 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 352 (497)
+.+.+... ........+..+..++.+.+..+.. ......+..++.++.+......+.+ ..+..+.+|+.+.+..+
T Consensus 233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT
T ss_pred ceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecc---ccccccccccccccccc
Confidence 66655432 2222223344556666666654322 1222334555666666655443222 23455667777776543
Q ss_pred CCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHH
Q 010952 353 QITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTL 432 (497)
Q Consensus 353 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 432 (497)
+...+..++..|.+|+.+.+..+ ++.....++..|.+|+.+++..+ +..++...|..|.+|+.+++..+ +... .
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~-~ 381 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQY-R 381 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGG-G
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEh-h
Confidence 44344456667777777777543 44444556677778888877654 66666667777888888888664 3322 2
Q ss_pred HHhhcCCCCcEE
Q 010952 433 ELISGLTGLVSL 444 (497)
Q Consensus 433 ~~l~~~~~L~~L 444 (497)
..+.++++|+.+
T Consensus 382 ~~F~~c~~L~~I 393 (394)
T 4fs7_A 382 YDFEDTTKFKWI 393 (394)
T ss_dssp GGBCTTCEEEEE
T ss_pred heecCCCCCcEE
Confidence 346666666654
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.37 E-value=5.4e-13 Score=126.68 Aligned_cols=335 Identities=16% Similarity=0.171 Sum_probs=168.8
Q ss_pred cChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccCccccccccccccCCCCCCEEeccCCCCCCcccc
Q 010952 88 ISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDM 167 (497)
Q Consensus 88 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 167 (497)
++..+..+|.+|.+|+.+.+... +......+|.+|++|+.+++.++ ...-...++..+..|+.+.+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~--------- 126 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL--------- 126 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT---------
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC---------
Confidence 44445566777777777777643 34444556667777777776542 1111223444455554443332
Q ss_pred ccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCC
Q 010952 168 KPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGS 247 (497)
Q Consensus 168 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 247 (497)
+ +.......+.++..+......... .....+|.++.+|+.+.+.++. .......|..+.+
T Consensus 127 ----------------~-l~~i~~~aF~~~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~ 186 (394)
T 4fs7_A 127 ----------------M-LKSIGVEAFKGCDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGK 186 (394)
T ss_dssp ----------------T-CCEECTTTTTTCCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTT
T ss_pred ----------------c-eeeecceeeecccccccccCcccc--ccchhhhcccCCCcEEecCCcc-ceeccccccCCCC
Confidence 1 111111223333222222111111 1112356778888888886542 3333455667777
Q ss_pred CCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccC
Q 010952 248 LKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSF 327 (497)
Q Consensus 248 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 327 (497)
|+.+.+..+ +.......+.++..|+.+.+..+... ... ......+|+.+.+.... .......+..+..++.+.+..
T Consensus 187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~-~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGD-FALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECT-TTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECC
T ss_pred ceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eeh-hhcccCCCceEEECCCc-eecccccccccccceeEEcCC
Confidence 777777544 33233344666777777766544211 111 11223566666664321 112223445566677776654
Q ss_pred CCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhH
Q 010952 328 TGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGV 407 (497)
Q Consensus 328 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 407 (497)
+. .......+..+..++.+......+.+ ..+..+.+|+.+.+..+ +......++..|.+|+.+++.. .++.++.
T Consensus 263 ~~-~~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~ 336 (394)
T 4fs7_A 263 NK-LRIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGK 336 (394)
T ss_dssp TT-CEECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECT
T ss_pred Cc-ceeeccccccccccceeccCceeecc---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhH
Confidence 42 12222334455666666655443322 34555666666666543 3333344556666666666643 2444545
Q ss_pred HhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCccccee
Q 010952 408 KHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSL 468 (497)
Q Consensus 408 ~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 468 (497)
..|..|.+|+.+++..+ ++.....++.+|++|+.+++..+- .. ...+|..|++|+.+
T Consensus 337 ~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~-~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKRL-EQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGG-GG-GGGGBCTTCEEEEE
T ss_pred HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCC-EE-hhheecCCCCCcEE
Confidence 55666666666666543 444444556666666666665431 11 12345556666554
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=1.1e-14 Score=124.00 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=100.0
Q ss_pred HhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCC
Q 010952 337 KLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 416 (497)
Q Consensus 337 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L 416 (497)
.+..+++|+.|++++|.++... .+..+++|+.|++++|.+... +..+..+++|+.|++++|.+++.. .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 5667778888888887776632 556678888888888887743 445566788999999999888753 57778899
Q ss_pred CeecccCCCCCChhHH-HHhhcCCCCcEEEeeCCccChhHHH----------hhcCCcccceeecccCCCCH
Q 010952 417 TLLNLSQNCNLTDKTL-ELISGLTGLVSLNVSNSRITSAGLR----------HLKPLKNLRSLTLESCKVTA 477 (497)
Q Consensus 417 ~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~----------~l~~~~~L~~L~l~~~~~~~ 477 (497)
+.|++++| .++.... ..+..+++|++|++++|++.+..+. .+..+++|+.|+ ++++++
T Consensus 118 ~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999998 7776433 5788889999999999988665432 367788999887 665554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=7.2e-13 Score=110.63 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=68.9
Q ss_pred CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCC
Q 010952 321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 400 (497)
Q Consensus 321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 400 (497)
+.++++++.+..... ...++|+.|++++|.++......+..+++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 455555555443211 12345666666666655443344455566666666666655544444455566666666666
Q ss_pred CCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccCh
Q 010952 401 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITS 453 (497)
Q Consensus 401 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~ 453 (497)
.++...+..+..+++|++|++++| .++...+..+..+++|+.|++++|++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 655554444455556666666655 4554433334455555555555555543
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=7.5e-13 Score=111.85 Aligned_cols=126 Identities=22% Similarity=0.243 Sum_probs=65.4
Q ss_pred CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCC
Q 010952 321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 400 (497)
Q Consensus 321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 400 (497)
+.++++++.+.... .. -.++++.|++++|.++... ..+..+++|+.|++++|.++...+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555544321 11 1245666666665555332 34455555666666555555544444555555555555555
Q ss_pred CCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCcc
Q 010952 401 GLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRI 451 (497)
Q Consensus 401 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l 451 (497)
.++...+..+..+++|++|+|++| .++...+..+..+++|+.|++++|++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 555554444555555555555555 45544334444555555555555554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=1.2e-12 Score=109.05 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=84.6
Q ss_pred CCCCCCEEeccCCCCChHHHHHhcCC-CCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCe
Q 010952 316 GLTNLESINLSFTGISDGSLRKLAGL-SSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 394 (497)
Q Consensus 316 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 394 (497)
.+++|+.|++++|.+... ..+..+ ++|+.|++++|.++.. ..+..+++|+.|++++|.++...+..+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 455666666666655532 112232 3677777777766653 45566777777777777777654444566777777
Q ss_pred eeecCCCCChhhH-HhhhhcCCCCeecccCCCCCChhHHH---HhhcCCCCcEEEeeCCccCh
Q 010952 395 LEICGGGLTDAGV-KHIKDLSSLTLLNLSQNCNLTDKTLE---LISGLTGLVSLNVSNSRITS 453 (497)
Q Consensus 395 L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~---~l~~~~~L~~L~l~~~~l~~ 453 (497)
|++++|.+..... ..+..+++|+.|++++| .++..... .+..+++|+.|++++|...+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7777777766532 25666777888888877 55443221 46677888888888887554
No 137
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.26 E-value=1.1e-11 Score=100.52 Aligned_cols=101 Identities=20% Similarity=0.415 Sum_probs=74.3
Q ss_pred CCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcC----CCCcEEEeeCCc-cChhHHHhhcCCccc
Q 010952 391 NLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGL----TGLVSLNVSNSR-ITSAGLRHLKPLKNL 465 (497)
Q Consensus 391 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~----~~L~~L~l~~~~-l~~~~~~~l~~~~~L 465 (497)
.|+.|++++|.+++.+...+..+++|++|+|++|..+++.....++.+ ++|+.|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 567777777777777676777778888888888877787777777764 468888888884 787777777778888
Q ss_pred ceeecccC-CCCHHH--HHHHhhcCCCCCc
Q 010952 466 RSLTLESC-KVTAND--IKRLQSRDLPNLV 492 (497)
Q Consensus 466 ~~L~l~~~-~~~~~~--~~~l~~~~~p~L~ 492 (497)
++|++++| .+++.+ ...+. ..+|+++
T Consensus 142 ~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~ 170 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKEKIVQAFK-TSLPSLE 170 (176)
T ss_dssp CEEEEESCTTCCCHHHHHHHHH-HHCTTCE
T ss_pred CEEECCCCCCCCchHHHHHHHH-HHCCCcE
Confidence 88888888 577765 34454 6677765
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=3.7e-12 Score=106.29 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=55.3
Q ss_pred CCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeee
Q 010952 318 TNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEI 397 (497)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 397 (497)
++|++|++++|.+.......+.++++|+.|++++|.++......+..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45555555555554433333445555555555555555433333445555555555555555444444445555555555
Q ss_pred cCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 398 CGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 398 ~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
++|.++......+..+++|++|++++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCC
Confidence 555555444433444555555555555
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=2.5e-12 Score=108.59 Aligned_cols=124 Identities=18% Similarity=0.203 Sum_probs=79.0
Q ss_pred CEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCC
Q 010952 297 KCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGA 376 (497)
Q Consensus 297 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 376 (497)
+.++++++.+.... .. ..++|++|++++|.+... +..+.++++|+.|++++|.++......+..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~~ip-~~--~~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KG--IPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SC--CCTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CC--CCCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666665554322 11 124677777777766532 245666677777777777766655555666777777777777
Q ss_pred CcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 377 RITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 377 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
.++...+..+..+++|+.|++++|.+.......+..+++|+.|++++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 776665556666777777777777776665555666677777777776
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=1.5e-11 Score=103.82 Aligned_cols=89 Identities=24% Similarity=0.234 Sum_probs=41.3
Q ss_pred ccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcCCCCCChhHhHhhhcCCCCC
Q 010952 170 LSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNLEGCPVTAACLDSLSALGSLFYLNLNRCQLSDDGCEKFSKIGSLK 249 (497)
Q Consensus 170 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 249 (497)
+..+++|++|++++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..++.+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 44444455555544444444444444444455555554444443333344444444444444444444344444444444
Q ss_pred EEEccCCCC
Q 010952 250 VLNLGFNEI 258 (497)
Q Consensus 250 ~L~l~~~~~ 258 (497)
.|++++|.+
T Consensus 130 ~L~L~~N~l 138 (192)
T 1w8a_A 130 SLNLASNPF 138 (192)
T ss_dssp EEECTTCCB
T ss_pred EEEeCCCCc
Confidence 444444443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=2e-13 Score=116.26 Aligned_cols=129 Identities=26% Similarity=0.262 Sum_probs=104.9
Q ss_pred HhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCC
Q 010952 361 ALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTG 440 (497)
Q Consensus 361 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~ 440 (497)
.+..+++|+.|++++|.+... + .+..+++|+.|++++|.+... +..+..+++|++|++++| .++.. + .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N-~l~~l-~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYN-QIASL-S-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEE-ECCCH-H-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCC-cCCcC-C-ccccCCC
Confidence 677899999999999998874 4 778899999999999999865 445666799999999999 78873 3 6888999
Q ss_pred CcEEEeeCCccChhHH-HhhcCCcccceeecccCCCCHHHH--------HHHhhcCCCCCccCC
Q 010952 441 LVSLNVSNSRITSAGL-RHLKPLKNLRSLTLESCKVTANDI--------KRLQSRDLPNLVSFR 495 (497)
Q Consensus 441 L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~--------~~l~~~~~p~L~~l~ 495 (497)
|+.|++++|.+++... ..+..+++|+.|++++|+++.... .......+|+|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999999987543 678899999999999998866422 111124788888764
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=8.6e-13 Score=134.61 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=47.1
Q ss_pred hhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCc
Q 010952 266 LKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLK 345 (497)
Q Consensus 266 l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 345 (497)
+..++.|+.|++++|.+.... ..+..+++|++|++++|.+. ..+..+..+++|++|++++|.++ ..+..+.++++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 344444555555544443211 11223444444444444444 22233344444444444444444 2233334444444
Q ss_pred EEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHH
Q 010952 346 SLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAA 384 (497)
Q Consensus 346 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 384 (497)
.|++++|.++.. +..+..+++|+.|++++|.+++..+.
T Consensus 297 ~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 297 YFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp EEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred EEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChH
Confidence 444444444322 22234444444444444444443333
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=2.5e-12 Score=131.25 Aligned_cols=163 Identities=16% Similarity=0.075 Sum_probs=90.0
Q ss_pred CCceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCcc----ccChhHHHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCC
Q 010952 50 GSSLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCI----QISDGGLEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLI 125 (497)
Q Consensus 50 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 125 (497)
.+.+++|+++++.+.. .+..+.....|+.+.+.... .+. ..+..+..++.|++|+|++|.. . .++..+..++
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l-~-~l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI-F-NISANIFKYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCC-S-CCCGGGGGCC
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCC-C-CCChhhcCCC
Confidence 4678889998877653 34344344445544443311 121 3456677888899999988874 3 4455566888
Q ss_pred CCCEEeccCccccccccccccCCCCCCEEeccCCCCCCccccccccCCCCCCEEEeeccccCchhHHhhhcCCCCcEEEc
Q 010952 126 NLVKLDLERCTRIHGGLVNLKGLMKLESLNIKWCNCITDSDMKPLSGLTNLKSLQISCSKVTDSGIAYLKGLQKLTLLNL 205 (497)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 205 (497)
+|++|++++|. +...+..+..+++|++|++++|. +. ..+..+..+++|++|++++|.++ ..+..+.++++|+.|++
T Consensus 248 ~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 248 FLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp SCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEEC
T ss_pred CCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeC
Confidence 89999998864 55667778888889999988865 33 35677888888888888888887 44556888888888888
Q ss_pred cCCCCChHHHHHhhC
Q 010952 206 EGCPVTAACLDSLSA 220 (497)
Q Consensus 206 ~~~~~~~~~~~~l~~ 220 (497)
++|.+.+..+..+..
T Consensus 324 ~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 324 EGNPLEKQFLKILTE 338 (727)
T ss_dssp TTSCCCSHHHHHHHH
T ss_pred CCCccCCCChHHHhh
Confidence 888888766666543
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.11 E-value=5.2e-10 Score=103.59 Aligned_cols=178 Identities=19% Similarity=0.201 Sum_probs=87.3
Q ss_pred hCCCCCCEeeccCcccch---------HHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHH
Q 010952 291 TGLCNLKCLELSDTQVGS---------SGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAA 361 (497)
Q Consensus 291 ~~~~~L~~L~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 361 (497)
..+++|+.|.+.+..... .....+..+|+|+.|.++++..... ..+ ..++|+.|.+..+.+.......
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l--~~~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI--GKK-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC--CSC-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee--ccc-cCCCCcEEEEecCCCChHHHHH
Confidence 346788888876542210 1223445566777777766521110 111 2566666666666666554444
Q ss_pred hc--CCCCCcEEEecCC--Cc-Ch----HHHHHh--hccCCCCeeeecCCCCChhhHHhhh---hcCCCCeecccCCCCC
Q 010952 362 LT--SLTGLTHLDLFGA--RI-TD----SGAAYL--RNFKNLRSLEICGGGLTDAGVKHIK---DLSSLTLLNLSQNCNL 427 (497)
Q Consensus 362 ~~--~~~~L~~L~l~~~--~~-~~----~~~~~l--~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~L~~L~l~~~~~l 427 (497)
+. .+|+|+.|+++.+ .. .. .....+ ..+|+|+.|++++|.+.+.....+. .+++|++|+|+.| .+
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L 291 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VL 291 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CC
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CC
Confidence 43 4666666666421 10 00 000111 1356666666666665544333332 2456666666655 55
Q ss_pred ChhHHHHh----hcCCCCcEEEeeCCccChhHHHhhcC-CcccceeecccCC
Q 010952 428 TDKTLELI----SGLTGLVSLNVSNSRITSAGLRHLKP-LKNLRSLTLESCK 474 (497)
Q Consensus 428 ~~~~~~~l----~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~L~~L~l~~~~ 474 (497)
++.....+ ..+++|+.|++++|++++.....+.. + ...+++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 55433322 23455666666666655555444432 2 2335555544
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.07 E-value=3.5e-10 Score=91.65 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=73.3
Q ss_pred ceeEEEeeCCCCChHHHHHhcCCCCcCEEEccCccccChhHHHHhhCC----CCCCEEEcCCCCCCChHHHHHHhCCCCC
Q 010952 52 SLLSVDLSGSDVTDSGLIHLKDCSNLQSLDFNFCIQISDGGLEHLRGL----SNLTSLSFRRNNAITAQGMKAFAGLINL 127 (497)
Q Consensus 52 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~l~~l~~L 127 (497)
.|++|+++++.+++.....+..|++|++|++++|..+++.....++.+ ++|++|++++|..+++.....++++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 588888888888888888888888888888888887888888888764 4788888888877788888888888888
Q ss_pred CEEeccCccccccc
Q 010952 128 VKLDLERCTRIHGG 141 (497)
Q Consensus 128 ~~L~l~~~~~~~~~ 141 (497)
++|++++|+.+++.
T Consensus 142 ~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 142 KYLFLSDLPGVKEK 155 (176)
T ss_dssp CEEEEESCTTCCCH
T ss_pred CEEECCCCCCCCch
Confidence 88888888766543
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=4.5e-11 Score=98.65 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=69.2
Q ss_pred CcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccC
Q 010952 344 LKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQ 423 (497)
Q Consensus 344 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 423 (497)
.+.++++++.++... ..+ .++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777777666532 111 36677777777777766566666677777777777777766555566677777777777
Q ss_pred CCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 424 NCNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 424 ~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
| .++...+..+..+++|+.|++++|++.
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 N-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7 666655555666777777777777654
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.07 E-value=1.9e-10 Score=109.04 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=69.7
Q ss_pred HHHhCCCCCCEeeccCcccchHHHHhhcCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCC
Q 010952 288 VNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTG 367 (497)
Q Consensus 288 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 367 (497)
.+|..+.+|+.+.+..... ......+..++.|+.+.+.. .+......++.++.+|+.+.+..+ ++..+..+|.+|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 3455566666666644321 12233455666677776653 333334455666777777777543 44444456677777
Q ss_pred CcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 368 LTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 368 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
|+++.+..+ ++.....+|..|.+|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 777777543 44444556777777777777765322 123445667777766554
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=2.5e-09 Score=98.98 Aligned_cols=160 Identities=20% Similarity=0.205 Sum_probs=82.6
Q ss_pred hhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHh--CCCCCCEeeccCc--ccc-hHHHHhhc
Q 010952 241 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLT--GLCNLKCLELSDT--QVG-SSGLRHLS 315 (497)
Q Consensus 241 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~--~~~~L~~L~l~~~--~~~-~~~~~~l~ 315 (497)
.+..+|+|+.|.++++...... . + ..++|+.|.+..+.+.......+. .+|+|++|+++.+ ... ......+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~-~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIG-K-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCC-S-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCceec-c-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3455666777766655211110 0 1 256677777766666555544444 4666776666421 100 00000000
Q ss_pred CCCCCCEEeccCCCCChHHHHHh--cCCCCCcEEEcCCCCCCHhHHHHhc---CCCCCcEEEecCCCcChHHHHHh----
Q 010952 316 GLTNLESINLSFTGISDGSLRKL--AGLSSLKSLNLDARQITDTGLAALT---SLTGLTHLDLFGARITDSGAAYL---- 386 (497)
Q Consensus 316 ~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l---- 386 (497)
..+ ..+|+|+.|.+.+|.+.+.+...+. .+++|+.|+++.|.+.+.++..+
T Consensus 244 --------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L 303 (362)
T 2ra8_A 244 --------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV 303 (362)
T ss_dssp --------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred --------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence 001 1355666666655555543332222 35667777777776666544333
Q ss_pred hccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 387 RNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 387 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
..+++|+.|++++|.+++.....+...- ...++++++
T Consensus 304 ~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~ 340 (362)
T 2ra8_A 304 DKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDS 340 (362)
T ss_dssp HHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSB
T ss_pred ccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCC
Confidence 3457777777777777776666555411 345677666
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=8.1e-11 Score=97.42 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=67.4
Q ss_pred cEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 345 KSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 345 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
+.++++++.++... ..+ .++|+.|++++|.+.+..+..+..+++|+.|++++|++....+..+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56677776665432 111 266777777777776665666666777777777777777665555566677777777777
Q ss_pred CCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 425 CNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 425 ~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
.++...+..+..+++|+.|++++|++.
T Consensus 92 -~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 -HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666554445666677777777777655
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.03 E-value=3.2e-10 Score=107.50 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=74.0
Q ss_pred HHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCC
Q 010952 336 RKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSS 415 (497)
Q Consensus 336 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~ 415 (497)
.++.++..|+.+.+.... ...+..++.++++|+.+.+.. .+......++..|.+|+.+++..+ ++.++...|..|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 345566667777665432 222334566677777777653 333333455666777777777543 55555556777777
Q ss_pred CCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccChhHHHhhcCCcccceeecccCC
Q 010952 416 LTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRITSAGLRHLKPLKNLRSLTLESCK 474 (497)
Q Consensus 416 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 474 (497)
|+.+.|..+ ++.....++.+|.+|+.+++.++... ...+..+.+|+.+.+..+.
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 777777553 55555566777777777777766422 2456667777777776553
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.02 E-value=2.7e-09 Score=89.12 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=59.9
Q ss_pred HHhcCCCCCcEEEcCCC-CCCHhHHHH----hcCCCCCcEEEecCCCcChHHHHH----hhccCCCCeeeecCCCCChhh
Q 010952 336 RKLAGLSSLKSLNLDAR-QITDTGLAA----LTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDAG 406 (497)
Q Consensus 336 ~~l~~~~~L~~L~l~~~-~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~~ 406 (497)
..+...++|++|++++| .+.+.+... +...++|++|++++|.+.+.+... +...++|++|++++|.+++.+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44445566666666665 665544322 223455555555555555443322 233344555555555554443
Q ss_pred HHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEe--eCCccChhHH----HhhcCCcccceeecccCCCCHHH
Q 010952 407 VKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNV--SNSRITSAGL----RHLKPLKNLRSLTLESCKVTAND 479 (497)
Q Consensus 407 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l--~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~~~~~ 479 (497)
...+ ...+...++|++|++ ++|.+++... +.+...++|++|++++|.+.+.+
T Consensus 110 ~~~l---------------------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 110 ILAL---------------------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHH---------------------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHH---------------------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 3222 223334445555555 4455554332 23344456666666666655543
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.1e-10 Score=96.23 Aligned_cols=105 Identities=23% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecC
Q 010952 320 LESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 399 (497)
Q Consensus 320 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 399 (497)
.+.++++++.+.... ..+ .++++.|++++|.++...+..+..+++|+.|++++|+++...+..+..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777776655422 111 36677777777777766555666777777777777777766555566777777777777
Q ss_pred CCCChhhHHhhhhcCCCCeecccCCCCCC
Q 010952 400 GGLTDAGVKHIKDLSSLTLLNLSQNCNLT 428 (497)
Q Consensus 400 ~~l~~~~~~~~~~l~~L~~L~l~~~~~l~ 428 (497)
|.+....+..+..+++|+.|+|++| .+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN-PWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC-CCC
Confidence 7777665555666777777777777 443
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.95 E-value=1.2e-08 Score=85.17 Aligned_cols=117 Identities=21% Similarity=0.160 Sum_probs=85.2
Q ss_pred hHHHHhhcCCCCCCEEeccCC-CCChHHHH----HhcCCCCCcEEEcCCCCCCHhHHHHh----cCCCCCcEEEecCCCc
Q 010952 308 SSGLRHLSGLTNLESINLSFT-GISDGSLR----KLAGLSSLKSLNLDARQITDTGLAAL----TSLTGLTHLDLFGARI 378 (497)
Q Consensus 308 ~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~ 378 (497)
......+...+.|++|++++| .+++.... .+...++|++|++++|.+.+.+...+ ...++|++|++++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 344556778899999999999 99876543 45567999999999999998775444 4568999999999999
Q ss_pred ChHHHHH----hhccCCCCeeee--cCCCCChhhHHhhh----hcCCCCeecccCC
Q 010952 379 TDSGAAY----LRNFKNLRSLEI--CGGGLTDAGVKHIK----DLSSLTLLNLSQN 424 (497)
Q Consensus 379 ~~~~~~~----l~~~~~L~~L~l--~~~~l~~~~~~~~~----~l~~L~~L~l~~~ 424 (497)
++.+... +...++|++|++ ++|.+++.+...+. ..++|++|++++|
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 9876544 455677777777 66777766544332 2345555555555
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.2e-10 Score=94.74 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=74.3
Q ss_pred CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecCC
Q 010952 321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICGG 400 (497)
Q Consensus 321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 400 (497)
+.++++++.+.... ..+ .++|+.|++++|.++...+..+..+++|+.|++++|+++...+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777665422 212 367888888888877765666777888888888888877765555677788888888888
Q ss_pred CCChhhHHhhhhcCCCCeecccCCCCCC
Q 010952 401 GLTDAGVKHIKDLSSLTLLNLSQNCNLT 428 (497)
Q Consensus 401 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~ 428 (497)
.+....+..+..+++|+.|++++| .+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N-~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN-PWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS-CBC
T ss_pred ccceeCHHHhccccCCCEEEeCCC-Ccc
Confidence 887765555777788888888888 444
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=6e-09 Score=97.03 Aligned_cols=102 Identities=25% Similarity=0.278 Sum_probs=59.1
Q ss_pred EEcCCC-CCCHhHHHHhcCCCCCcEEEecC-CCcChHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 347 LNLDAR-QITDTGLAALTSLTGLTHLDLFG-ARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 347 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
++++++ .++... . +..+++|+.|++++ |.+....+..+..+++|+.|++++|.+.+..+..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 555432 2 55566666666664 6666655555666666666666666666665555666666666666666
Q ss_pred CCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 425 CNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 425 ~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
.++...+..+..++ |+.|++.+|++.
T Consensus 91 -~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 -ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55544333333333 666666666554
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.69 E-value=1.2e-08 Score=96.35 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=61.4
Q ss_pred cCCCCCCEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCe
Q 010952 315 SGLTNLESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRS 394 (497)
Q Consensus 315 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 394 (497)
..+..|+.+.+..+ +......++.++.+|+.+.+... +...+..++..|.+|+.+.+.++.+......++..|.+|+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 34444444444432 22222233444555555555432 22223344555666666666655555444555666666666
Q ss_pred eeecCCCCChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCC
Q 010952 395 LEICGGGLTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLT 439 (497)
Q Consensus 395 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~ 439 (497)
+.+..+ ++.++...|..|.+|+++.+..+ ++.....++.+++
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~ 356 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSS 356 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSS
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCC
Confidence 666432 44444556666777777766543 4444444455543
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.69 E-value=2.1e-08 Score=94.60 Aligned_cols=145 Identities=18% Similarity=0.168 Sum_probs=90.2
Q ss_pred hhhcCCCCCEEEccCCCCChhHHHHhhCCCCcCEEeCCCCCCCHhHHHHHhCCCCCCEeeccCcccchHHHHhhcCCCCC
Q 010952 241 KFSKIGSLKVLNLGFNEITDECLVHLKGLTNLESLNLDSCGIGDEGLVNLTGLCNLKCLELSDTQVGSSGLRHLSGLTNL 320 (497)
Q Consensus 241 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 320 (497)
.+.....++.+.+..+ +.......+..+..|+.+.+..+ +.......+..+.+|+.+.+..+ +.......+..+++|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445566666666433 22222334566777777777654 44444455666777888777543 333334456778888
Q ss_pred CEEeccCCCCChHHHHHhcCCCCCcEEEcCCCCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccC
Q 010952 321 ESINLSFTGISDGSLRKLAGLSSLKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFK 390 (497)
Q Consensus 321 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 390 (497)
+.+.+..+.+......++.++.+|+.+.+..+ ++..+..+|.+|.+|+.+.+..+ ++.....++..++
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 88888777666656667778888888888653 55545567778888888887654 4433344555553
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.63 E-value=1.4e-08 Score=94.45 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=83.6
Q ss_pred EEeccCC-CCChHHHHHhcCCCCCcEEEcCC-CCCCHhHHHHhcCCCCCcEEEecCCCcChHHHHHhhccCCCCeeeecC
Q 010952 322 SINLSFT-GISDGSLRKLAGLSSLKSLNLDA-RQITDTGLAALTSLTGLTHLDLFGARITDSGAAYLRNFKNLRSLEICG 399 (497)
Q Consensus 322 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 399 (497)
.++.+++ .+.. ++. +..+++|+.|++++ |.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566766 6665 344 78888999999986 888887667788899999999999999988788888899999999999
Q ss_pred CCCChhhHHhhhhcCCCCeecccCCCCCCh
Q 010952 400 GGLTDAGVKHIKDLSSLTLLNLSQNCNLTD 429 (497)
Q Consensus 400 ~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 429 (497)
|.+....+..+..++ |+.|+|.+| .+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N-~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGN-PLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSS-CCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCC-CccC
Confidence 999887655555454 999999998 5653
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.23 E-value=1.4e-05 Score=65.96 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=66.9
Q ss_pred HHHhcCCCCCcEEEcCCC-CCCHhHHH----HhcCCCCCcEEEecCCCcChHHHHH----hhccCCCCeeeecCCCCChh
Q 010952 335 LRKLAGLSSLKSLNLDAR-QITDTGLA----ALTSLTGLTHLDLFGARITDSGAAY----LRNFKNLRSLEICGGGLTDA 405 (497)
Q Consensus 335 ~~~l~~~~~L~~L~l~~~-~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~l~~~ 405 (497)
...+.+-+.|+.|+++++ .+.+.+.. ++..-..|+.|++++|.+.+..... +.....|++|+++.|.|++.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 344455677777777774 77665543 3334566777777777777655433 34556777777777777766
Q ss_pred hHHhhhh----cCCCCeecccCCC--CCChh----HHHHhhcCCCCcEEEeeCCc
Q 010952 406 GVKHIKD----LSSLTLLNLSQNC--NLTDK----TLELISGLTGLVSLNVSNSR 450 (497)
Q Consensus 406 ~~~~~~~----l~~L~~L~l~~~~--~l~~~----~~~~l~~~~~L~~L~l~~~~ 450 (497)
+...+.. -..|++|+|++|. .+.+. +.+.+...+.|+.|+++.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 6554432 2556666666541 23332 23344445555556555544
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.20 E-value=2.5e-05 Score=64.53 Aligned_cols=109 Identities=16% Similarity=0.211 Sum_probs=47.7
Q ss_pred CCCCCcEEEecCC-CcChHHHH----HhhccCCCCeeeecCCCCChhhHHhhh----hcCCCCeecccCCCCCChhHHH-
Q 010952 364 SLTGLTHLDLFGA-RITDSGAA----YLRNFKNLRSLEICGGGLTDAGVKHIK----DLSSLTLLNLSQNCNLTDKTLE- 433 (497)
Q Consensus 364 ~~~~L~~L~l~~~-~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~~~~~~~----~l~~L~~L~l~~~~~l~~~~~~- 433 (497)
.-+.|++|+++++ .+.+.+.. .+.....|+.|++++|.+.+.+...+. .-.+|++|+|++| .+.+....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence 3445555555543 44443322 223344555555555555544433332 2245555555555 45444332
Q ss_pred ---HhhcCCCCcEEEeeCC---ccChh----HHHhhcCCcccceeecccC
Q 010952 434 ---LISGLTGLVSLNVSNS---RITSA----GLRHLKPLKNLRSLTLESC 473 (497)
Q Consensus 434 ---~l~~~~~L~~L~l~~~---~l~~~----~~~~l~~~~~L~~L~l~~~ 473 (497)
.+...+.|++|++++| .+... +.+.+...+.|+.|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2223344555555433 23322 2233334445555555444
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=1.2e-06 Score=76.65 Aligned_cols=81 Identities=25% Similarity=0.305 Sum_probs=44.0
Q ss_pred hccCCCCeeeecCCCCChhh--HHhhhhcCCCCeecccCCCCCChh-HHHHhhcCCCCcEEEeeCCccChhH-------H
Q 010952 387 RNFKNLRSLEICGGGLTDAG--VKHIKDLSSLTLLNLSQNCNLTDK-TLELISGLTGLVSLNVSNSRITSAG-------L 456 (497)
Q Consensus 387 ~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~l~~~~-------~ 456 (497)
..+++|+.|++++|.+.+.. +..+..+++|+.|+|++| .+++. ....+..+ +|++|++++|++.+.. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 34666666666666666532 233445666777777666 55543 11222222 6666666666665311 1
Q ss_pred HhhcCCcccceee
Q 010952 457 RHLKPLKNLRSLT 469 (497)
Q Consensus 457 ~~l~~~~~L~~L~ 469 (497)
..+..+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2345566666655
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=1.7e-06 Score=75.74 Aligned_cols=83 Identities=24% Similarity=0.347 Sum_probs=63.4
Q ss_pred hhcCCCCeecccCCCCCCh--hHHHHhhcCCCCcEEEeeCCccChh-HHHhhcCCcccceeecccCCCCH-----HHHHH
Q 010952 411 KDLSSLTLLNLSQNCNLTD--KTLELISGLTGLVSLNVSNSRITSA-GLRHLKPLKNLRSLTLESCKVTA-----NDIKR 482 (497)
Q Consensus 411 ~~l~~L~~L~l~~~~~l~~--~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~ 482 (497)
..+++|++|+|++| .++. .++..+..+++|+.|+|++|.+.+. ....+..+ +|++|++++|+++. .....
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 46899999999999 7877 3445667899999999999999875 22344444 99999999999985 23333
Q ss_pred HhhcCCCCCccCC
Q 010952 483 LQSRDLPNLVSFR 495 (497)
Q Consensus 483 l~~~~~p~L~~l~ 495 (497)
.....+|+|+.|.
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3336889998874
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.18 E-value=0.026 Score=43.24 Aligned_cols=52 Identities=19% Similarity=0.127 Sum_probs=31.2
Q ss_pred EEEecCCCcC--hHHHHHhhccCCCCeeeecCCCCChhhHHhhhhcCCCCeecccCC
Q 010952 370 HLDLFGARIT--DSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSLTLLNLSQN 424 (497)
Q Consensus 370 ~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 424 (497)
.++.++..++ .. |.. -.++|+.|++++|.|+.+....|..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~v-P~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTS-CSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccC-CCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555555554 22 221 1345777777777776665556666667777777776
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.41 E-value=0.038 Score=42.28 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=36.5
Q ss_pred eeeecCCCCC--hhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCCccC
Q 010952 394 SLEICGGGLT--DAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNSRIT 452 (497)
Q Consensus 394 ~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~l~ 452 (497)
.++-++++++ .+ +..+ .++|++|+|++| .++......+..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTS-CSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccC-CCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 4555666665 33 3222 256888888888 777766666777788888888877754
No 165
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=83.45 E-value=1.5 Score=26.84 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=24.2
Q ss_pred CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHH
Q 010952 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIA 47 (497)
Q Consensus 1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (497)
.||+|++..||.++ ....+.. |. .+|..|...+.
T Consensus 11 ~LP~eil~~I~~~L------~~~dl~~---~~----~Vck~w~~~~~ 44 (53)
T 1fs1_A 11 SLPDELLLGIFSCL------CLPELLK---VS----GVCKRWYRLAS 44 (53)
T ss_dssp SSCHHHHHHHHTTS------CGGGHHH---HH----TTCHHHHHHHT
T ss_pred HCCHHHHHHHHHcC------CHHHHHH---HH----HHHHHHHHHhC
Confidence 38999999999997 3333332 33 67888887665
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.44 E-value=2.7 Score=30.02 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=26.5
Q ss_pred CChhhHHhhhhcCCCCeecccCCCCCChhHHHHhhcCCCCcEEEeeCC
Q 010952 402 LTDAGVKHIKDLSSLTLLNLSQNCNLTDKTLELISGLTGLVSLNVSNS 449 (497)
Q Consensus 402 l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 449 (497)
++.+....|..|.+|+.+.|-.. ++.....++.+|.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence 34444445556666666666553 44444555666666666666543
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.12 E-value=2.4 Score=30.28 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=21.0
Q ss_pred HHHhhCCCCCCEEEcCCCCCCChHHHHHHhCCCCCCEEeccC
Q 010952 93 LEHLRGLSNLTSLSFRRNNAITAQGMKAFAGLINLVKLDLER 134 (497)
Q Consensus 93 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (497)
..+|.+|..|+.+.+... ++.....+|.+|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555543 3333444555566666665554
No 168
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=33.50 E-value=30 Score=30.31 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=24.6
Q ss_pred CCchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHH
Q 010952 1 MLPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIA 47 (497)
Q Consensus 1 ~lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (497)
.||+|++.+||.+| .+..+. .+|. .+|..|...+.
T Consensus 53 ~LP~ell~~Il~~L------p~~~L~--~r~~----~VCk~Wr~l~~ 87 (297)
T 2e31_A 53 ELPEPLLLRVLAEL------PATELV--QACR----LVCLRWKELVD 87 (297)
T ss_dssp SSCHHHHHHHHHTS------CHHHHH--HTGG----GTCHHHHHHHT
T ss_pred hCCHHHHHHHHHcC------CHHHHH--HHHH----HHhHHHHHHhc
Confidence 38999999999997 443332 1354 77888876654
No 169
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=22.02 E-value=86 Score=27.45 Aligned_cols=15 Identities=33% Similarity=0.374 Sum_probs=13.3
Q ss_pred CchHHHHHHHHhhhh
Q 010952 2 LPRDISQQIFNELVY 16 (497)
Q Consensus 2 lp~~~~~~~~~~l~~ 16 (497)
||.|++.+||++|..
T Consensus 8 LP~ei~l~IlsfL~p 22 (312)
T 3l2o_B 8 LPIDVQLYILSFLSP 22 (312)
T ss_dssp SCHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHhcCCH
Confidence 899999999999833
No 170
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=21.11 E-value=70 Score=29.70 Aligned_cols=33 Identities=36% Similarity=0.589 Sum_probs=22.7
Q ss_pred CchHHHHHHHHhhhhhhccChhhHHHHhhhhcCCCCCchhHHHHHH
Q 010952 2 LPRDISQQIFNELVYSRCLTEVSLEAFRDCALQYPGVNDKWMDVIA 47 (497)
Q Consensus 2 lp~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (497)
||+|++.+||.+| ++..+.. |. .++..|...+.
T Consensus 18 lp~~~~~~i~~~l------~~~~l~~---~~----~v~~~w~~~~~ 50 (464)
T 3v7d_B 18 LPFEISLKIFNYL------QFEDIIN---SL----GVSQNWNKIIR 50 (464)
T ss_dssp SCHHHHHHHHTTS------CHHHHHH---HH----TTCHHHHHHHT
T ss_pred CCHHHHHHHHhcC------CHHHHHH---HH----HHHHHHHHHHc
Confidence 8999999999997 4444333 33 66666765544
Done!