Query 010956
Match_columns 497
No_of_seqs 316 out of 1193
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03547 Mem_trans: Membrane t 100.0 1.4E-31 3E-36 272.1 21.6 279 7-492 107-385 (385)
2 TIGR00946 2a69 he Auxin Efflux 99.9 1.2E-24 2.5E-29 218.9 19.9 152 339-496 170-321 (321)
3 PRK09903 putative transporter 99.9 1.9E-23 4.1E-28 210.3 18.7 148 342-496 164-311 (314)
4 COG0679 Predicted permeases [G 99.9 1.3E-20 2.8E-25 190.5 19.1 151 339-494 156-307 (311)
5 KOG2722 Predicted membrane pro 99.1 4.2E-11 9.1E-16 124.2 6.0 149 342-491 239-400 (408)
6 TIGR00841 bass bile acid trans 99.1 1.8E-09 4E-14 108.6 13.1 107 388-494 12-119 (286)
7 TIGR00832 acr3 arsenical-resis 98.7 1.2E-06 2.5E-11 90.5 18.0 141 345-491 4-152 (328)
8 PF01758 SBF: Sodium Bile acid 98.6 7.8E-07 1.7E-11 84.0 13.4 107 389-495 3-111 (187)
9 COG0385 Predicted Na+-dependen 98.6 1.6E-06 3.4E-11 89.6 15.2 107 387-493 41-148 (319)
10 PF13593 DUF4137: SBF-like CPA 98.0 9.8E-05 2.1E-09 75.9 13.5 138 351-493 1-144 (313)
11 COG0798 ACR3 Arsenite efflux p 97.5 0.0035 7.6E-08 65.5 15.3 146 343-496 10-166 (342)
12 PRK04288 antiholin-like protei 96.6 0.14 3.1E-06 51.3 17.0 139 346-492 32-171 (232)
13 PRK10711 hypothetical protein; 96.6 0.13 2.8E-06 51.6 16.5 140 345-492 26-166 (231)
14 TIGR00659 conserved hypothetic 96.5 0.18 3.9E-06 50.4 16.8 138 345-490 25-163 (226)
15 PF04172 LrgB: LrgB-like famil 96.5 0.16 3.5E-06 50.4 16.3 141 342-491 12-154 (215)
16 COG1346 LrgB Putative effector 96.3 0.1 2.2E-06 52.2 14.0 137 341-487 24-163 (230)
17 PF03601 Cons_hypoth698: Conse 95.0 0.5 1.1E-05 49.0 13.8 143 349-497 25-171 (305)
18 PRK03659 glutathione-regulated 94.7 1.3 2.9E-05 49.6 17.1 133 351-491 238-372 (601)
19 PRK03562 glutathione-regulated 94.4 1.6 3.5E-05 49.2 17.0 113 376-490 260-374 (621)
20 PRK03562 glutathione-regulated 93.3 2.3 5.1E-05 47.9 15.6 117 341-465 20-138 (621)
21 KOG2718 Na+-bile acid cotransp 92.2 0.2 4.4E-06 53.4 5.1 109 388-496 117-227 (371)
22 TIGR00932 2a37 transporter, mo 92.1 11 0.00024 37.4 17.0 93 341-441 7-101 (273)
23 PLN03159 cation/H(+) antiporte 91.9 5.2 0.00011 46.8 16.5 91 342-437 59-157 (832)
24 PRK10669 putative cation:proto 91.7 6.6 0.00014 43.4 16.3 115 342-464 22-138 (558)
25 PRK10669 putative cation:proto 91.1 9.3 0.0002 42.2 16.7 134 351-492 249-384 (558)
26 COG2855 Predicted membrane pro 90.9 2.4 5.1E-05 44.9 11.2 136 352-496 39-179 (334)
27 PF03812 KdgT: 2-keto-3-deoxyg 90.5 3.8 8.3E-05 43.0 12.2 119 354-476 16-143 (314)
28 TIGR00844 c_cpa1 na(+)/h(+) an 90.3 7.1 0.00015 45.8 15.3 90 347-440 35-129 (810)
29 COG0475 KefB Kef-type K+ trans 90.2 7.3 0.00016 41.6 14.5 128 344-479 24-155 (397)
30 PRK12460 2-keto-3-deoxyglucona 90.2 1.9 4.1E-05 45.2 9.7 81 353-443 169-249 (312)
31 PRK03659 glutathione-regulated 89.8 14 0.00031 41.5 16.9 115 343-465 22-138 (601)
32 TIGR00698 conserved hypothetic 88.4 5.3 0.00012 42.2 11.6 90 349-443 30-120 (335)
33 PRK05326 potassium/proton anti 86.8 17 0.00037 40.4 14.9 124 342-474 22-152 (562)
34 PRK12460 2-keto-3-deoxyglucona 82.5 4.7 0.0001 42.3 7.7 87 387-476 48-138 (312)
35 TIGR03082 Gneg_AbrB_dup membra 81.7 45 0.00098 31.1 16.0 117 348-476 16-137 (156)
36 PRK15060 L-dehydroascorbate tr 81.0 62 0.0013 35.4 15.8 92 371-478 294-397 (425)
37 PF05982 DUF897: Domain of unk 81.0 31 0.00067 36.6 13.1 105 340-451 166-274 (327)
38 TIGR00832 acr3 arsenical-resis 78.8 13 0.00029 38.8 9.6 112 380-491 210-324 (328)
39 PF05684 DUF819: Protein of un 78.5 93 0.002 33.4 16.0 131 350-486 25-159 (378)
40 COG3329 Predicted permease [Ge 77.5 16 0.00035 38.8 9.6 63 339-404 205-267 (372)
41 TIGR00793 kdgT 2-keto-3-deoxyg 74.9 6 0.00013 41.5 5.8 86 388-476 49-143 (314)
42 PF03222 Trp_Tyr_perm: Tryptop 73.7 1.3E+02 0.0029 32.1 15.7 50 447-496 184-241 (394)
43 PF05145 AmoA: Putative ammoni 67.8 95 0.0021 32.4 12.7 108 356-475 5-114 (318)
44 PRK05326 potassium/proton anti 66.2 89 0.0019 34.8 12.8 85 376-464 266-351 (562)
45 TIGR02123 TRAP_fused TRAP tran 65.8 1.8E+02 0.0038 33.5 15.2 42 433-474 462-509 (613)
46 PRK03818 putative transporter; 65.1 1.7E+02 0.0037 33.0 14.8 91 354-448 34-126 (552)
47 TIGR00844 c_cpa1 na(+)/h(+) an 64.7 82 0.0018 37.4 12.5 84 381-464 292-379 (810)
48 TIGR03802 Asp_Ala_antiprt aspa 64.7 71 0.0015 36.0 11.8 81 356-448 41-123 (562)
49 KOG4821 Predicted Na+-dependen 64.0 16 0.00034 37.2 5.8 91 394-487 64-159 (287)
50 COG1593 DctQ TRAP-type C4-dica 63.1 1.9E+02 0.0042 31.4 14.1 101 357-477 238-350 (379)
51 TIGR00841 bass bile acid trans 62.6 1.3E+02 0.0028 30.6 12.4 53 414-466 196-248 (286)
52 PF05145 AmoA: Putative ammoni 61.5 2.1E+02 0.0046 29.9 16.4 117 349-477 174-295 (318)
53 COG0475 KefB Kef-type K+ trans 60.9 2.4E+02 0.0052 30.3 16.4 49 350-404 243-293 (397)
54 TIGR00400 mgtE Mg2+ transporte 60.6 1.7E+02 0.0037 31.8 13.5 33 449-482 398-430 (449)
55 COG0385 Predicted Na+-dependen 58.2 1.4E+02 0.003 31.8 11.8 107 374-480 184-290 (319)
56 COG3180 AbrB Putative ammonia 57.4 2.4E+02 0.0051 30.5 13.4 81 392-476 62-148 (352)
57 TIGR00819 ydaH p-Aminobenzoyl- 55.6 2.8E+02 0.006 31.4 14.2 66 432-497 420-500 (513)
58 PRK04972 putative transporter; 55.6 2.9E+02 0.0062 31.3 14.5 81 356-448 43-125 (558)
59 TIGR00831 a_cpa1 Na+/H+ antipo 53.6 3.6E+02 0.0078 30.1 17.3 113 349-472 20-137 (525)
60 PF12971 NAGLU_N: Alpha-N-acet 51.2 16 0.00034 31.1 3.0 45 48-98 3-47 (86)
61 PLN03159 cation/H(+) antiporte 51.0 3.5E+02 0.0075 32.2 14.8 63 378-442 315-380 (832)
62 TIGR03109 exosortase_1 exosort 50.4 27 0.00058 35.8 5.1 109 352-460 95-219 (267)
63 PF02447 GntP_permease: GntP f 50.1 3.9E+02 0.0085 29.5 14.2 37 451-490 152-188 (441)
64 PRK12585 putative monovalent c 50.0 37 0.00079 33.7 5.6 78 357-435 13-90 (197)
65 KOG2532 Permease of the major 49.0 1.3E+02 0.0028 33.1 10.3 39 345-383 251-290 (466)
66 PF03956 DUF340: Membrane prot 48.7 2.7E+02 0.0059 27.2 13.4 42 355-404 3-44 (191)
67 PRK10472 low affinity gluconat 47.7 4.3E+02 0.0093 29.3 16.7 37 451-490 156-192 (445)
68 TIGR00783 ccs citrate carrier 45.6 2.1E+02 0.0046 30.8 10.9 93 350-447 204-300 (347)
69 PRK05274 2-keto-3-deoxyglucona 42.7 66 0.0014 34.0 6.7 85 355-449 178-262 (326)
70 PF11992 DUF3488: Domain of un 42.2 4.2E+02 0.0091 27.6 12.5 20 476-495 158-177 (325)
71 TIGR03113 exosortase_2 exosort 40.7 58 0.0013 33.5 5.7 108 353-460 90-218 (268)
72 PF05684 DUF819: Protein of un 39.0 3.8E+02 0.0083 28.9 11.8 96 381-482 264-359 (378)
73 PF03547 Mem_trans: Membrane t 38.6 4.6E+02 0.01 27.0 13.3 99 352-456 8-106 (385)
74 PRK15132 tyrosine transporter 37.2 5.7E+02 0.012 27.7 13.3 48 449-496 183-238 (403)
75 TIGR00840 b_cpa1 sodium/hydrog 36.7 6.4E+02 0.014 28.6 13.6 125 353-484 38-186 (559)
76 TIGR00955 3a01204 The Eye Pigm 36.0 5.8E+02 0.013 28.9 13.2 28 339-366 345-378 (617)
77 KOG2568 Predicted membrane pro 35.7 5.7E+02 0.012 29.1 12.7 68 415-482 273-345 (518)
78 TIGR00698 conserved hypothetic 34.6 2.9E+02 0.0063 29.4 9.9 45 373-418 269-313 (335)
79 COG2855 Predicted membrane pro 33.0 2.9E+02 0.0064 29.6 9.5 44 372-416 270-313 (334)
80 TIGR00931 antiport_nhaC Na+/H+ 32.9 7.1E+02 0.015 27.5 16.1 112 374-496 89-206 (454)
81 KOG3626 Organic anion transpor 32.3 1.6E+02 0.0035 34.7 8.1 51 330-380 370-421 (735)
82 PF06826 Asp-Al_Ex: Predicted 31.8 4.7E+02 0.01 25.1 14.7 89 356-448 29-120 (169)
83 COG0814 SdaC Amino acid permea 31.1 5.8E+02 0.013 27.5 11.7 47 444-490 190-244 (415)
84 COG2978 AbgT Putative p-aminob 30.6 8.4E+02 0.018 27.7 12.7 43 430-472 423-474 (516)
85 COG3180 AbrB Putative ammonia 30.4 7.3E+02 0.016 26.9 16.0 120 345-476 203-327 (352)
86 PF00999 Na_H_Exchanger: Sodiu 29.6 38 0.00082 34.9 2.4 127 350-484 234-366 (380)
87 PF03806 ABG_transport: AbgT p 29.3 7.7E+02 0.017 28.0 12.4 43 430-472 411-462 (502)
88 TIGR00341 conserved hypothetic 28.6 7.5E+02 0.016 26.4 14.2 50 438-487 229-278 (325)
89 TIGR03802 Asp_Ala_antiprt aspa 28.3 9.1E+02 0.02 27.3 13.8 88 356-448 421-514 (562)
90 PRK04972 putative transporter; 27.8 9.3E+02 0.02 27.3 13.7 18 65-82 215-233 (558)
91 PF03390 2HCT: 2-hydroxycarbox 27.7 8E+02 0.017 27.2 12.0 92 351-447 272-367 (414)
92 PF09515 Thia_YuaJ: Thiamine t 27.4 3.5E+02 0.0076 26.3 8.4 101 350-468 41-151 (177)
93 PRK14984 high-affinity glucona 25.9 9.4E+02 0.02 26.7 15.6 135 350-490 22-188 (438)
94 PF04156 IncA: IncA protein; 25.0 94 0.002 29.3 4.0 26 377-402 35-60 (191)
95 PRK10654 dcuC C4-dicarboxylate 24.8 9.8E+02 0.021 26.5 12.5 50 435-484 384-439 (455)
96 PF10766 DUF2592: Protein of u 24.6 1.1E+02 0.0023 23.4 3.3 25 342-366 3-27 (41)
97 PRK12586 putative monovalent c 24.4 2.3E+02 0.005 26.9 6.4 79 356-435 15-93 (145)
98 PRK06814 acylglycerophosphoeth 24.1 3.6E+02 0.0078 32.1 9.4 41 341-381 214-255 (1140)
99 TIGR00840 b_cpa1 sodium/hydrog 23.9 9.1E+02 0.02 27.4 12.0 88 377-466 287-378 (559)
100 TIGR00793 kdgT 2-keto-3-deoxyg 23.6 6.4E+02 0.014 27.0 10.0 56 376-432 189-244 (314)
101 PF05313 Pox_P21: Poxvirus P21 23.3 6.4E+02 0.014 25.1 9.2 139 269-429 12-156 (189)
102 PRK12587 putative monovalent c 23.2 4.3E+02 0.0092 24.2 7.6 80 356-436 13-92 (118)
103 PRK08633 2-acyl-glycerophospho 23.0 5.5E+02 0.012 30.3 10.5 23 341-363 221-243 (1146)
104 PF01219 DAGK_prokar: Prokaryo 23.0 2.9E+02 0.0064 24.5 6.5 63 430-492 28-103 (104)
105 PF06808 DctM: DctM-like trans 22.9 9.8E+02 0.021 25.8 14.5 89 372-476 295-395 (416)
106 PF01988 VIT1: VIT family; In 22.8 4.2E+02 0.009 25.9 8.1 78 351-438 130-211 (213)
107 PF04024 PspC: PspC domain; I 22.4 1.9E+02 0.004 23.4 4.6 24 461-484 19-42 (61)
108 PRK12674 putative monovalent c 22.3 2.9E+02 0.0063 24.2 6.2 77 357-436 11-87 (99)
109 TIGR02602 8TM_EpsH eight trans 22.3 1.7E+02 0.0036 29.5 5.3 109 351-459 66-193 (241)
110 PRK12670 putative monovalent c 22.1 2.5E+02 0.0055 24.8 5.8 76 357-435 10-85 (99)
111 COG1983 PspC Putative stress-r 22.0 1.7E+02 0.0036 24.7 4.4 24 461-484 20-43 (70)
112 COG4176 ProW ABC-type proline/ 21.8 6.6E+02 0.014 26.6 9.5 87 372-463 88-178 (290)
113 cd02435 CCC1 CCC1. CCC1: This 20.6 3.7E+02 0.0081 27.2 7.4 51 385-437 187-237 (241)
114 PRK12675 putative monovalent c 20.5 4.5E+02 0.0097 23.6 7.1 77 357-435 7-83 (104)
115 TIGR00914 2A0601 heavy metal e 20.4 1.5E+03 0.033 27.5 13.6 32 39-70 20-51 (1051)
116 PRK12671 putative monovalent c 20.4 3.4E+02 0.0074 25.0 6.4 78 357-435 19-96 (120)
117 COG2239 MgtE Mg/Co/Ni transpor 20.4 1.2E+03 0.026 25.9 12.6 38 444-482 393-430 (451)
No 1
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.98 E-value=1.4e-31 Score=272.09 Aligned_cols=279 Identities=32% Similarity=0.431 Sum_probs=231.7
Q ss_pred eEeccchhhhcccccccCchhhhhHHHHHHHHHHHHHHHHhhhhhHhhhhcCCCCCcceEEEEECCCccccCCCCccccc
Q 010956 7 FSINFTKHSRMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETD 86 (497)
Q Consensus 7 ~~~~ipl~~~myg~~~gslmvqiVVLQcIIWYTLlLflfE~r~ak~li~~qfp~~a~si~s~~vd~dv~sl~g~~~l~t~ 86 (497)
..+|+|++.++||+..-...+...++++++||++..+|+|+|.++.-..||.++++.++.+.+.|+|..++||+++.++|
T Consensus 107 ~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T PF03547_consen 107 GFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTE 186 (385)
T ss_pred hhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccccccccccccccccCCccccCCcccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcEEEEEEecCCCCcchhccccCCCCCCCCCCCCCCccceecccCCCCCCCCCCCCCcccccccccCCCCCCCC
Q 010956 87 AEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHADFYSMMAGGRSSNFG 166 (497)
Q Consensus 87 ae~~~dg~~~v~vr~s~~s~~~~~~~~~~~~~~~tpr~snlt~~eiys~~ss~~~tpr~s~f~~~d~~~~~~~~~~s~~~ 166 (497)
.|+++||+.|...+++.+++.+...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 211 (385)
T PF03547_consen 187 EEIDEDGSPSSTPSQSSASAPSSVS------------------------------------------------------- 211 (385)
T ss_pred cccccCCcccccccccccccchhhc-------------------------------------------------------
Confidence 9999998866544332221111000
Q ss_pred CcccccccCCCCCCCCCCCCchhhhhhcCCCCCCCCCCCCCCCCCCCCCCcccccchhhhhhcccccccCCCCCCCCCCC
Q 010956 167 ATDVYGLSATSRGPTPRPSNYEDEANNANKSRFHHYPAPNPGMFSPTNNNTRVNASANKKAINGQAQQKGEDGAGAGAGA 246 (497)
Q Consensus 167 ~~~~~~~~~~s~~~tpr~s~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (497)
.+|++++
T Consensus 212 -------------~~~~~~~------------------------------------------------------------ 218 (385)
T PF03547_consen 212 -------------TSPSPSN------------------------------------------------------------ 218 (385)
T ss_pred -------------cCCcccc------------------------------------------------------------
Confidence 0000000
Q ss_pred ccceEEEecCCCCCCccccCCCCCCCCcccccccccCCCCCCCCCCCCCcccccccccccCccccCccCCCCCCCCCCCC
Q 010956 247 RDLHMFVWSSSASPVSDVFGGHDYNNNDHKEVRLAVSPQGGKGEGGGGHEEYMEREDFSFGNRRGLESNNNEGEKVGDEK 326 (497)
Q Consensus 247 ~~~hmfvws~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 326 (497)
.... . .
T Consensus 219 ------------------------------------------~~~~---~-----~------------------------ 224 (385)
T PF03547_consen 219 ------------------------------------------STGA---E-----Q------------------------ 224 (385)
T ss_pred ------------------------------------------cchh---h-----h------------------------
Confidence 0000 0 0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchh
Q 010956 327 PKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPR 406 (497)
Q Consensus 327 ~~~mp~~~v~tr~ilk~vlkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k 406 (497)
...-+++..+++.+++.++||+++|.++|+++.+++....+.+|.++.++++++|++++|++||++|+.|+..++
T Consensus 225 -----~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~ 299 (385)
T PF03547_consen 225 -----KSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPR 299 (385)
T ss_pred -----hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc
Confidence 000155666778889999999999999999999996544555669999999999999999999999999997644
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHH
Q 010956 407 IIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALP 486 (497)
Q Consensus 407 ~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLP 486 (497)
...+.++.....+++|++++|++++++++++++++....++++++++|+|++.+++|++||.+++.++.+++++|+++++
T Consensus 300 ~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~ 379 (385)
T PF03547_consen 300 KSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIP 379 (385)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34456777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 010956 487 ITLVYY 492 (497)
Q Consensus 487 i~lv~~ 492 (497)
++.+|+
T Consensus 380 ~~~~~~ 385 (385)
T PF03547_consen 380 TLPLWI 385 (385)
T ss_pred HHHHHC
Confidence 888774
No 2
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.93 E-value=1.2e-24 Score=218.93 Aligned_cols=152 Identities=47% Similarity=0.711 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHH
Q 010956 339 LILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFS 418 (497)
Q Consensus 339 ~ilk~vlkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~ 418 (497)
..+++.+|++++||++||+++|++++++ ++++|+++.++++++|++++|++||++|+.++.. ..++.++.++..
T Consensus 170 ~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~--~~~~~~~~~~~~ 243 (321)
T TIGR00946 170 LMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTPMALFSLGLALSPR--KIKLGVRDAILA 243 (321)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChh--hhccChHHHHHH
Confidence 4466789999999999999999999999 8999999999999999999999999999999863 345667889999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 010956 419 MAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 496 (497)
Q Consensus 419 ~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~~iLLg 496 (497)
+++|+++.|++++++..++++++...+++++++|||+|.+++++|++||.|++++++++++||++|++++.+|..++|
T Consensus 244 ~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~~ 321 (321)
T TIGR00946 244 LIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321 (321)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888886
No 3
>PRK09903 putative transporter YfdV; Provisional
Probab=99.91 E-value=1.9e-23 Score=210.30 Aligned_cols=148 Identities=17% Similarity=0.294 Sum_probs=134.7
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHH
Q 010956 342 IMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAV 421 (497)
Q Consensus 342 k~vlkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lv 421 (497)
++.+|++++||+++|+++|++++++ ++++|+++.++++++|++++|++||++|++|+.... ...+..+..+++
T Consensus 164 ~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~---~~~~~~~~~~~~ 236 (314)
T PRK09903 164 LSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKF---EFSAEIAYNTFL 236 (314)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cccHHHHHHHHH
Confidence 4668889999999999999999999 999999999999999999999999999999987531 224677888999
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 010956 422 RFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 496 (497)
Q Consensus 422 RLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~~iLLg 496 (497)
|+++.|++++++++++++++...+++++++|||+|++++++|++||.|++.++.+|.+||++|+.++.+|.+++.
T Consensus 237 Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~~ 311 (314)
T PRK09903 237 KLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSR 311 (314)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998889999999999999999999999999999999999999999999999999777766666653
No 4
>COG0679 Predicted permeases [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=190.48 Aligned_cols=151 Identities=25% Similarity=0.515 Sum_probs=135.1
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHH
Q 010956 339 LILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFS 418 (497)
Q Consensus 339 ~ilk~vlkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~ 418 (497)
...+++.|++++||+++|.++|+++++. ++++|+.+++++++++++++|++|+++|+.|+.. +......+.++..
T Consensus 156 ~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~-~~~~~~~~~~~~~ 230 (311)
T COG0679 156 KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIALGLSLAFL-KLKGSKPPIILIA 230 (311)
T ss_pred hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh-hhccccchhHHHH
Confidence 5677889999999999999999999999 9999999999999999999999999999999983 2223334556666
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHH-HHHHHH
Q 010956 419 MAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPIT-LVYYIL 494 (497)
Q Consensus 419 ~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~-lv~~iL 494 (497)
..+|+++.|++++++.+++|+++....++++++|||+|++++++|++||.|++.+++.+++||++|+.++ .+++++
T Consensus 231 ~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 231 LSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999999999999999999999999999999999999999999999999997766 444443
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=99.14 E-value=4.2e-11 Score=124.20 Aligned_cols=149 Identities=18% Similarity=0.175 Sum_probs=122.8
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHhhhc----CCCC-CcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHH
Q 010956 342 IMVWRKLIRNPNTYSSLIGLVWSLVSFR----WNVQ-MPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAA 416 (497)
Q Consensus 342 k~vlkkLLrNP~IiAiILGLIlsLl~fr----~gI~-LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il 416 (497)
+..+|. +.+|++||.++|+++...++- .+-. .-.++.+++.++|+.++|+.|+++|..|....+....+.+.++
T Consensus 239 ~~~L~~-i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~ii 317 (408)
T KOG2722|consen 239 KVILKE-IFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVII 317 (408)
T ss_pred HhhHHH-hcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEE
Confidence 444555 679999999999999887541 1111 2258999999999999999999999999986665566677888
Q ss_pred HHHHHHHHHHHHHHHHHHHH------hC-CchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHH-HHHH
Q 010956 417 FSMAVRFLTGPAVMAAASIA------VG-LRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIA-LPIT 488 (497)
Q Consensus 417 ~~~lvRLLV~PLLal~l~~l------Lg-Ld~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLS-LPi~ 488 (497)
.+++.|+++.|++.+++... +. -|+....|+++|.++|+|++...+|+.+|..++++|.+.+|+.+++ ++++
T Consensus 318 giii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~lt 397 (408)
T KOG2722|consen 318 GIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLT 397 (408)
T ss_pred EEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHH
Confidence 88999999999999887653 23 4789999999999999999999999999999999999999999865 4555
Q ss_pred HHH
Q 010956 489 LVY 491 (497)
Q Consensus 489 lv~ 491 (497)
+|.
T Consensus 398 vw~ 400 (408)
T KOG2722|consen 398 VWS 400 (408)
T ss_pred HHH
Confidence 443
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=99.05 E-value=1.8e-09 Score=108.57 Aligned_cols=107 Identities=14% Similarity=0.074 Sum_probs=92.2
Q ss_pred hHHHHHHHHHhHhcccch-hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHHh
Q 010956 388 AGLGMAMFSLGLFMALQP-RIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY 466 (497)
Q Consensus 388 AatPLALf~LGlsLa~~~-k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eY 466 (497)
..+.++||.+|+.+.... +....+.+....+.+.|++++|++++++..++++++.....+++++++|++..++++++.|
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHh
Confidence 347889999999998742 2223344677888899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 010956 467 NVHPDILSTGVIFGMLIALPITLVYYIL 494 (497)
Q Consensus 467 g~d~elASs~V~~STLLSLPi~lv~~iL 494 (497)
|+|.++++..+.++|++++.++.+|..+
T Consensus 92 ~gn~~la~~~~~~stlls~vt~Pl~l~~ 119 (286)
T TIGR00841 92 KGDMALSISMTTCSTLLALGMMPLLLYI 119 (286)
T ss_pred CCCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987666555444
No 7
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.66 E-value=1.2e-06 Score=90.46 Aligned_cols=141 Identities=10% Similarity=-0.016 Sum_probs=104.8
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhH------HHHHHHHHhHhcccc-hhhhhcchhHHHH
Q 010956 345 WRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAG------LGMAMFSLGLFMALQ-PRIIACGNSIAAF 417 (497)
Q Consensus 345 lkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~Aa------tPLALf~LGlsLa~~-~k~i~~~~k~il~ 417 (497)
+.+.+....++++++|+++.+. .-....++... .+.... ..+.||.+|+.+..+ .+...++.|....
T Consensus 4 ~~~~~~~~~~~~~i~~~~~g~~----~P~~~~~~~~~--~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~ 77 (328)
T TIGR00832 4 LERYLTLWIFLAIAAGVGLGVL----FPSVFQALAAL--EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLIL 77 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHH--HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHH
Confidence 3444555667777788887765 11111222111 111222 234677777877663 2455567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHH
Q 010956 418 SMAVRFLTGPAVMAAASIAV-GLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY 491 (497)
Q Consensus 418 ~~lvRLLV~PLLal~l~~lL-gLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~ 491 (497)
+.+..++++|++++++.+++ ++++....-+++.+++|.+..+.+++...|+|..++-+.+.++|++++.++..+
T Consensus 78 ~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l 152 (328)
T TIGR00832 78 SLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPL 152 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 999999999999999999999999999999999999999999999886665443
No 8
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.60 E-value=7.8e-07 Score=84.02 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=83.5
Q ss_pred HHHHHHHHHhHhcccch-hhhhcchhHHHHHHHHHHHHHHHHHHHHH-HHhCCchHHHHHHHHhhccchhhHHHHHHHHh
Q 010956 389 GLGMAMFSLGLFMALQP-RIIACGNSIAAFSMAVRFLTGPAVMAAAS-IAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY 466 (497)
Q Consensus 389 atPLALf~LGlsLa~~~-k~i~~~~k~il~~~lvRLLV~PLLal~l~-~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eY 466 (497)
.+.+.||.+|+.+.... +...++.+.+..+.+.+++++|++++++. .++++++.....+++++++|.|..+.+++...
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~ 82 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLA 82 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHT
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 45678999999988742 33345567788899999999999999999 88999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 010956 467 NVHPDILSTGVIFGMLIALPITLVYYILL 495 (497)
Q Consensus 467 g~d~elASs~V~~STLLSLPi~lv~~iLL 495 (497)
|+|..++.+.+.++|++++.++.++..++
T Consensus 83 ~Gd~~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 83 GGDVALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccceeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999998866655554443
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.55 E-value=1.6e-06 Score=89.57 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=93.5
Q ss_pred HhHHHHHHHHHhHhcccch-hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHH
Q 010956 387 DAGLGMAMFSLGLFMALQP-RIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKE 465 (497)
Q Consensus 387 ~AatPLALf~LGlsLa~~~-k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~e 465 (497)
.....+.||..|+.|..+. +....+++..+.+.+.-++++|++++++.+++.++++...-+++.+++|.++.+.+++..
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~l 120 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYL 120 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHH
Confidence 5667788888888887743 444567889999999999999999999999999999999999999999999999999999
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010956 466 YNVHPDILSTGVIFGMLIALPITLVYYI 493 (497)
Q Consensus 466 Yg~d~elASs~V~~STLLSLPi~lv~~i 493 (497)
+++|...+-+...+||+++..++.++..
T Consensus 121 AkGnValsV~~tsvStll~~f~tPllv~ 148 (319)
T COG0385 121 AKGNVALSVCSTSVSTLLGPFLTPLLVG 148 (319)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998665554433
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.99 E-value=9.8e-05 Score=75.87 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=105.9
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCcHHHHHHH--HHHHHhHHHHHHHHHhHhcccch-hhhhcchhHHHHHHHHHHHHHH
Q 010956 351 NPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSI--SILSDAGLGMAMFSLGLFMALQP-RIIACGNSIAAFSMAVRFLTGP 427 (497)
Q Consensus 351 NP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL--~iLG~AatPLALf~LGlsLa~~~-k~i~~~~k~il~~~lvRLLV~P 427 (497)
|+.++++++++++... ++-|......+ +.....++.+.+|.-|+.|.... +.-..++|....+.+.-+++.|
T Consensus 1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4556777778777765 34443333333 24556668899999999998732 2234567888889999999999
Q ss_pred HHHHHHHHHh--CCchHHHHHHHHhhccchhhHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010956 428 AVMAAASIAV--GLRGVLLHVAIVQAALPQGIVP-FVFAKEYNVHPDILSTGVIFGMLIALPITLVYYI 493 (497)
Q Consensus 428 LLal~l~~lL--gLd~~ll~VaIL~AAmP~Ai~s-~VfA~eYg~d~elASs~V~~STLLSLPi~lv~~i 493 (497)
++++++..++ .++++...-+++.++||+.+.+ .++.+..|+|...+-....+++++++.+++.|..
T Consensus 76 ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~ 144 (313)
T PF13593_consen 76 LLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLL 144 (313)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 9999999887 4688899999999999999665 5799999999999999999999988666554443
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.0035 Score=65.54 Aligned_cols=146 Identities=14% Similarity=0.137 Sum_probs=103.8
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHH--HHHHhHHHHHH----HHHhHhcccch---hhhhcchh
Q 010956 343 MVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSIS--ILSDAGLGMAM----FSLGLFMALQP---RIIACGNS 413 (497)
Q Consensus 343 ~vlkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~--iLG~AatPLAL----f~LGlsLa~~~---k~i~~~~k 413 (497)
..+.|.+.-=+++++++|+.+... .|. +.+.+. ..++..+|++. +.--..+.-.. +....+.|
T Consensus 10 ~~~dk~l~~wv~l~i~~Gi~lG~~-------~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k 81 (342)
T COG0798 10 SFLDKYLTLWVFLAIAIGILLGVH-------FPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPK 81 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-------ccc-hhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcch
Confidence 445555555578899999887654 343 233333 33444444432 22222222211 33345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHH-HHH
Q 010956 414 IAAFSMAVRFLTGPAVMAAASIAV-GLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPIT-LVY 491 (497)
Q Consensus 414 ~il~~~lvRLLV~PLLal~l~~lL-gLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~-lv~ 491 (497)
.....+++-.++.|++|+++++++ +..++.+.-+++....|+-....++...-++|.++++..|.++.++.+.+. .+.
T Consensus 82 ~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~ 161 (342)
T COG0798 82 PLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLG 161 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999998865 666789999999999999999999999999999999999999999987665 444
Q ss_pred HHHhc
Q 010956 492 YILLG 496 (497)
Q Consensus 492 ~iLLg 496 (497)
+++||
T Consensus 162 ~~~l~ 166 (342)
T COG0798 162 KFFLG 166 (342)
T ss_pred HHHHh
Confidence 44443
No 12
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=96.59 E-value=0.14 Score=51.32 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=97.4
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHH
Q 010956 346 RKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLT 425 (497)
Q Consensus 346 kkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV 425 (497)
|..+.||.+++.++-+.+-++. +++..++ .+.-++|... ..-|-.+++.=|.++.+.+++.++.+...+++=-++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~~---~i~Y~~Y-~~g~~~l~~l-LgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKLT---GISYEEY-NIGGDIISFF-LEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHHh---CCCHHHH-HhhhHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5556899999888776665541 5555444 2233444433 333556778888888788888899999999998888
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHhhc-cchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010956 426 GPAVMAAASIAVGLRGVLLHVAIVQAA-LPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYY 492 (497)
Q Consensus 426 ~PLLal~l~~lLgLd~~ll~VaIL~AA-mP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~~ 492 (497)
.-+..+.+++++|++......+.--+. .|. +.-.+++.|+++.+++..|+++=++...+-..++
T Consensus 107 ~i~s~~~la~~lgl~~~~~~Sl~pKSVTtPI---Am~is~~iGG~psLtA~~ViitGi~Gai~g~~ll 171 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMASMLPQAATTAI---ALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFL 171 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhhHhhhHHH---HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999875554433322 232 2346899999999999999998887654444433
No 13
>PRK10711 hypothetical protein; Provisional
Probab=96.55 E-value=0.13 Score=51.56 Aligned_cols=140 Identities=12% Similarity=0.088 Sum_probs=100.1
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHH
Q 010956 345 WRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFL 424 (497)
Q Consensus 345 lkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLL 424 (497)
++..+.||.++++++-+++-++. +++..++-. .-++|...- .-|-.+++.=|.++.+.+++.++.+...+++=-+
T Consensus 26 ~~~~~l~Pll~s~~~ii~~L~~~---~i~Y~~Y~~-g~~~l~~lL-gPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~ 100 (231)
T PRK10711 26 FKFPLLNPLLVAMVVIIPFLLLT---GIPYEHYFK-GSEVLNDLL-QPAVVALAFPLYEQLHQIRARWKSIISICFIGSV 100 (231)
T ss_pred cCCCcccHHHHHHHHHHHHHHHh---CCCHHHHHh-ccHHHHhhh-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 36677899999987666555441 665555533 335555333 3356677888888877888889999999999889
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHhhc-cchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010956 425 TGPAVMAAASIAVGLRGVLLHVAIVQAA-LPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYY 492 (497)
Q Consensus 425 V~PLLal~l~~lLgLd~~ll~VaIL~AA-mP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~~ 492 (497)
+.-+..+.++.++|++.+....+.--+. +|.| .-.+++.|+++.+++..|+++=++...+-..++
T Consensus 101 v~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIA---m~is~~iGG~~sLta~~ViitGi~Ga~~g~~ll 166 (231)
T PRK10711 101 VAMVTGTAVALWMGATPEIAASILPKSVTTPIA---MAVGGSIGGIPAISAVCVIFVGILGAVFGHTLL 166 (231)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHH---HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876665544332 3333 345899999999999999998887644443333
No 14
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=96.47 E-value=0.18 Score=50.41 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=97.3
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHH
Q 010956 345 WRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFL 424 (497)
Q Consensus 345 lkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLL 424 (497)
++..+.||.+++.++-+.+-++. +++-.++- +--+++. ....-+-.+++.=|.++.+.+++.++.+...+++=-+
T Consensus 25 ~~~~~lnPvl~~~~~ii~~L~~~---~i~Y~~Y~-~g~~~l~-~lLgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~ 99 (226)
T TIGR00659 25 FKRPYLNPLLLTPLVLVGILLLV---GIPYESYM-LGGGVIN-DLLGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSV 99 (226)
T ss_pred cCCccccHHHHHHHHHHHHHHHh---CCCHHHHH-HhhHHHH-HhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 47778899999988776665542 56554542 3334444 3444466777888888877788888888888888888
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHhhc-cchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHH
Q 010956 425 TGPAVMAAASIAVGLRGVLLHVAIVQAA-LPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLV 490 (497)
Q Consensus 425 V~PLLal~l~~lLgLd~~ll~VaIL~AA-mP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv 490 (497)
+.-+..+.+++++|++......+.--+. +|.| .-.+++.|+++.+++..++++=++.-.+-..
T Consensus 100 ~~~~s~~~la~~lg~~~~i~~Sl~pkSvTtpiA---m~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ 163 (226)
T TIGR00659 100 IAIISGTLLALLLGLGPEIIASLLPKSVTTPIA---MHVSEMIGGIPAVTAVFVILTGLLGTVFGPM 163 (226)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHhhhHHhhHHHH---HHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999876554433221 2322 3358999999999999999988876443333
No 15
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=96.47 E-value=0.16 Score=50.37 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=100.6
Q ss_pred HHHHHHHhhchhHHHHHHHHHH-HHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHH
Q 010956 342 IMVWRKLIRNPNTYSSLIGLVW-SLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMA 420 (497)
Q Consensus 342 k~vlkkLLrNP~IiAiILGLIl-sLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~l 420 (497)
.+-+++.+.||.++++++=+++ .++ +++..++.. .-+++. ....-+-.+++.=|.++.+.++++++.++..++
T Consensus 12 ~~r~~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y~~-gg~~l~-~lLgPatVALAvPLY~~~~~l~~~~~~il~~~~ 85 (215)
T PF04172_consen 12 YKRFKSPFLNPLLIAIVLIIAFLLLT----GIPYEDYMQ-GGDILS-FLLGPATVALAVPLYRQRRLLKKNWIPILVGVL 85 (215)
T ss_pred HHHcCCCcccHHHHHHHHHHHHHHHH----CCCHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666789999998875444 444 666555543 335553 444455788899999887778888888998888
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHhh-ccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHH
Q 010956 421 VRFLTGPAVMAAASIAVGLRGVLLHVAIVQA-ALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY 491 (497)
Q Consensus 421 vRLLV~PLLal~l~~lLgLd~~ll~VaIL~A-AmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~ 491 (497)
+=-++.-...+.+++++|+++.....+.--+ .+|.| .-++++.|+++.+++..|+++=++...+-.++
T Consensus 86 ~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiA---i~is~~iGG~~sLta~~VvitGi~Ga~~g~~l 154 (215)
T PF04172_consen 86 VGSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPIA---IEISEQIGGIPSLTAVFVVITGILGAVLGPPL 154 (215)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHH---HHHHHHhCChHHHHHHHHHHHhhHHHHhHHHH
Confidence 8888888888999999999987655544332 23433 34589999999999999999887764443333
No 16
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=96.30 E-value=0.1 Score=52.25 Aligned_cols=137 Identities=12% Similarity=0.045 Sum_probs=100.6
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHH
Q 010956 341 LIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMA 420 (497)
Q Consensus 341 lk~vlkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~l 420 (497)
+.+-+|+.+.||.+++.++.+.+-+.. +++-.+.... -++|...--| |-.++..=|..|.+.+++.|+.++..++
T Consensus 24 l~~r~~~~~l~PlLv~~~~li~~L~~~---~i~Y~~Y~~g-~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~ 98 (230)
T COG1346 24 LYKRTKSPFLNPLLVATVLLIAFLLLF---GISYEDYMKG-GQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVL 98 (230)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHHHc---CCCHHHHhcc-cHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344467788899999999887776652 6655444332 2444444445 7777888888888888889999999998
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHH---HHHHHhCCChhhHHHHHHHHHHHHHHH
Q 010956 421 VRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPF---VFAKEYNVHPDILSTGVIFGMLIALPI 487 (497)
Q Consensus 421 vRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~---VfA~eYg~d~elASs~V~~STLLSLPi 487 (497)
+=-++.=...+.+.++||++++....+ +|-.+.+. -.+++.|+-|++++..|+++=++.-.+
T Consensus 99 vGs~~ai~s~~llak~~g~~~~~~~Sl-----~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavl 163 (230)
T COG1346 99 VGSVVAIISGVLLAKLFGLSPELILSL-----LPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVL 163 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHh-----cccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 888888888889999999999755543 45544333 358889999999999999988876433
No 17
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.03 E-value=0.5 Score=49.02 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=82.7
Q ss_pred hhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHH
Q 010956 349 IRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPA 428 (497)
Q Consensus 349 LrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PL 428 (497)
..++.++|+++|+++.-+ -+..|+....-++.-.+....++...+|..+.... ...-+.+.+....+ =.++.-+
T Consensus 25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~-i~~~G~~~~~~~~~-~v~~~~~ 98 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSD-ILALGWKGLLIIII-VVILTFL 98 (305)
T ss_pred CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHH-HHHhCccHHHHHHH-HHHHHHH
Confidence 456889999999999831 26788999999999999999999999999998742 22333333333333 3333333
Q ss_pred HHHHHH-HHhCCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHH---HHHHHHHHHHHHhcC
Q 010956 429 VMAAAS-IAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGML---IALPITLVYYILLGL 497 (497)
Q Consensus 429 Lal~l~-~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STL---LSLPi~lv~~iLLgl 497 (497)
+.+.+. ..+++|......+-.-.+.--+....-.+---+.+++..+..+..-++ +++.+.++.+-.+||
T Consensus 99 ~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~l 171 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALGL 171 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445 788998764333222222211222222223334444444444443333 445555666655553
No 18
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.71 E-value=1.3 Score=49.58 Aligned_cols=133 Identities=13% Similarity=0.095 Sum_probs=80.6
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHH
Q 010956 351 NPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVM 430 (497)
Q Consensus 351 NP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLa 430 (497)
++.+-|+++|+++. +-+.-..+...+..+.+...|+-.+.+|+.+... .....+..++..+++.+++-++.+
T Consensus 238 s~~LGAFlaGl~l~------~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~--~l~~~~~~il~~~~~~l~~K~~~~ 309 (601)
T PRK03659 238 SMALGTFIAGVLLA------ESEYRHELEIAIEPFKGLLLGLFFISVGMALNLG--VLYTHLLWVLISVVVLVAVKGLVL 309 (601)
T ss_pred cHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHH--HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 2223355666777778899999999999998863 223334455556666777778888
Q ss_pred HHHHHHhCCchHHH-HH-HHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHH
Q 010956 431 AAASIAVGLRGVLL-HV-AIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY 491 (497)
Q Consensus 431 l~l~~lLgLd~~ll-~V-aIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~ 491 (497)
++.+..++++.... .+ +.+...-..+.+.+.++.++|.=.+...+.++..+++|+.+++++
T Consensus 310 ~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l 372 (601)
T PRK03659 310 YLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLL 372 (601)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888875332 22 222223344444455567777666656666666666665444443
No 19
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.43 E-value=1.6 Score=49.18 Aligned_cols=113 Identities=11% Similarity=0.066 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHH--HHHHHHhhcc
Q 010956 376 AIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVL--LHVAIVQAAL 453 (497)
Q Consensus 376 ~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~l--l~VaIL~AAm 453 (497)
..+...+.-+.+.-.|+-.+.+|+.+... .....+..++..+++.+++-++.+++.+.+++++... ...+.+...-
T Consensus 260 ~~le~~i~pf~~lll~lFFi~vG~~id~~--~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~G 337 (621)
T PRK03562 260 HALESDIEPFKGLLLGLFFIAVGMSIDFG--TLLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGG 337 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccc
Confidence 45677777777888999999999999873 2222344445555667788888888888888886432 2222232334
Q ss_pred chhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHH
Q 010956 454 PQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLV 490 (497)
Q Consensus 454 P~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv 490 (497)
..+.+.+-++.+.|.=.+...+.+++.+++|+.++.+
T Consensus 338 ef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~ 374 (621)
T PRK03562 338 EFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPL 374 (621)
T ss_pred cHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566667654444555555566666544443
No 20
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.29 E-value=2.3 Score=47.90 Aligned_cols=117 Identities=14% Similarity=0.139 Sum_probs=68.4
Q ss_pred HHHHHHHHhhchhHHHHHH-HHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHH
Q 010956 341 LIMVWRKLIRNPNTYSSLI-GLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSM 419 (497)
Q Consensus 341 lk~vlkkLLrNP~IiAiIL-GLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~ 419 (497)
...+.|+ ++-|.+++.++ |+++.-.++ ++- +. .+.+..++..++.+-||.+|+.+... ..+...+.++...
T Consensus 20 ~~~l~~r-l~lp~vlgyilaGillGP~~l--g~i-~~--~~~i~~laelGvv~LlF~iGLEl~~~--~l~~~~~~~~~~g 91 (621)
T PRK03562 20 IVPIAVR-LGLGSVLGYLIAGCIIGPWGL--RLV-TD--VESILHFAEFGVVLMLFVIGLELDPQ--RLWKLRRSIFGGG 91 (621)
T ss_pred HHHHHHH-hCCChHHHHHHHHHHhCcccc--cCC-CC--HHHHHHHHHHHHHHHHHHHHhCcCHH--HHHHHHHHHHHHH
Confidence 3444555 68888888764 666654322 221 11 23577899999999999999999863 3334345555555
Q ss_pred HHHHHHHHHHHHHHHHHhCCchHHHH-HHHHhhccchhhHHHHHHHH
Q 010956 420 AVRFLTGPAVMAAASIAVGLRGVLLH-VAIVQAALPQGIVPFVFAKE 465 (497)
Q Consensus 420 lvRLLV~PLLal~l~~lLgLd~~ll~-VaIL~AAmP~Ai~s~VfA~e 465 (497)
+.-+++.-++.+++.+++|++..... +.+..+...+++..-++.+.
T Consensus 92 ~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~ 138 (621)
T PRK03562 92 ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNER 138 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555566677777653322 22223334455555555543
No 21
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=92.21 E-value=0.2 Score=53.39 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhHhcccch-hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH-HHHHHhhccchhhHHHHHHHH
Q 010956 388 AGLGMAMFSLGLFMALQP-RIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLL-HVAIVQAALPQGIVPFVFAKE 465 (497)
Q Consensus 388 AatPLALf~LGlsLa~~~-k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll-~VaIL~AAmP~Ai~s~VfA~e 465 (497)
.....-|+++|+.+..+. +...+.-+....+.+.+++++|+..+.+...+.++.... ..+++.+..|.+...++.++.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~ 196 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKR 196 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeec
Confidence 455667888898887643 222233455566666799999999999998888888774 555555666777888888887
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 010956 466 YNVHPDILSTGVIFGMLIALPITLVYYILLG 496 (497)
Q Consensus 466 Yg~d~elASs~V~~STLLSLPi~lv~~iLLg 496 (497)
-+.|..++..+..++|+.++.+++++-++++
T Consensus 197 ~~g~v~lsilmT~~stv~avi~~pl~s~~l~ 227 (371)
T KOG2718|consen 197 LPGDVTLSILMTTISTVLAVILTPLLSILLG 227 (371)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7888888888888888888777777766654
No 22
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=92.10 E-value=11 Score=37.39 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=56.7
Q ss_pred HHHHHHHHhhchhHHHH-HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHH
Q 010956 341 LIMVWRKLIRNPNTYSS-LIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSM 419 (497)
Q Consensus 341 lk~vlkkLLrNP~IiAi-ILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~ 419 (497)
...+.|+ ++-|.+.+. ++|+++.-..+ ++--+. +.++.+++.+..+.||..|+.+.. +..++..+......
T Consensus 7 ~~~l~~~-l~lP~~v~~il~GillGp~~l--g~i~~~---~~~~~l~~igl~~llF~~Gl~~d~--~~l~~~~~~~~~~~ 78 (273)
T TIGR00932 7 AVPLSRR-LGIPSVLGYLLAGVLIGPSGL--GLISNV---EGVNHLAEFGVILLMFLIGLELDL--ERLWKLRKAAFGVG 78 (273)
T ss_pred HHHHHHH-hCCCHHHHHHHHHHHhCcccc--cCCCCh---HHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHH
Confidence 3455666 577766655 56777763311 221122 468889999999999999999986 33445556666665
Q ss_pred HHHHHHH-HHHHHHHHHHhCCch
Q 010956 420 AVRFLTG-PAVMAAASIAVGLRG 441 (497)
Q Consensus 420 lvRLLV~-PLLal~l~~lLgLd~ 441 (497)
+.-+++- =++.+.+.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~ 101 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLAL 101 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCH
Confidence 5555543 222333456677654
No 23
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=91.93 E-value=5.2 Score=46.84 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=53.1
Q ss_pred HHHHHHHhhchhHHHHH-HHHHHHHhhhcCCCC-------CcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchh
Q 010956 342 IMVWRKLIRNPNTYSSL-IGLVWSLVSFRWNVQ-------MPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNS 413 (497)
Q Consensus 342 k~vlkkLLrNP~IiAiI-LGLIlsLl~fr~gI~-------LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k 413 (497)
..++|+ ++-|.+++-+ +|+++.-..+ +.- +|.--...++.++..+.-+-||.+|+.+... .+++..+
T Consensus 59 ~~ll~r-l~~P~ivgeIlaGIlLGPs~l--g~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~--~lr~~~k 133 (832)
T PLN03159 59 VFILKP-FRQPRVISEILGGVILGPSVL--GQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDIS--VIRRTGK 133 (832)
T ss_pred HHHHHh-cCCChhHHHHHHHHhcCHhhh--CcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHH--HHHhcch
Confidence 334444 6888888865 5566543221 221 2333335789999999999999999999863 3444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 010956 414 IAAFSMAVRFLTGPAVMAAASIAV 437 (497)
Q Consensus 414 ~il~~~lvRLLV~PLLal~l~~lL 437 (497)
..+...+.-+++--++.+++.+++
T Consensus 134 ~a~~ia~~~~ilpf~lg~~~~~~l 157 (832)
T PLN03159 134 KALAIAIAGMALPFCIGLAFSFIF 157 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444433322333343333
No 24
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.73 E-value=6.6 Score=43.38 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=63.0
Q ss_pred HHHHHHHhhchhHHHHH-HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHH
Q 010956 342 IMVWRKLIRNPNTYSSL-IGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMA 420 (497)
Q Consensus 342 k~vlkkLLrNP~IiAiI-LGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~l 420 (497)
..+.|+ ++-|.+++-+ +|+++.-..+ ++ ++. ...+..++..+..+-||.+|+.+... .++...+..+...+
T Consensus 22 ~~l~~r-l~~P~ivg~IlaGillGp~~l--g~-~~~--~~~~~~la~lGli~llF~~Gle~d~~--~l~~~~~~~~~~~~ 93 (558)
T PRK10669 22 GMLANR-LRISPLVGYLLAGVLAGPFTP--GF-VAD--TKLAPELAELGVILLMFGVGLHFSLK--DLMAVKSIAIPGAI 93 (558)
T ss_pred HHHHHH-cCCCHHHHHHHHHHhhCcccc--cc-ccc--hHHHHHHHHHHHHHHHHHhHhcCCHH--HHHHHhhHHHHHHH
Confidence 444555 6888887765 5566543311 22 111 24578899999999999999999863 23332233333444
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHH-HHHHHhhccchhhHHHHHHH
Q 010956 421 VRFLTGPAVMAAASIAVGLRGVLL-HVAIVQAALPQGIVPFVFAK 464 (497)
Q Consensus 421 vRLLV~PLLal~l~~lLgLd~~ll-~VaIL~AAmP~Ai~s~VfA~ 464 (497)
.-+++.-++.+++.+.++.+.... ...+.++...++++.-++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e 138 (558)
T PRK10669 94 AQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEE 138 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455544445555556677653222 12223333344444444433
No 25
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.07 E-value=9.3 Score=42.22 Aligned_cols=134 Identities=13% Similarity=0.069 Sum_probs=77.3
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHH
Q 010956 351 NPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVM 430 (497)
Q Consensus 351 NP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLa 430 (497)
++.+-|+++|+++.-. +.-..+.+...-+.+...|+-.+.+|+.+.... .......++..+++.++.-++..
T Consensus 249 s~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~--l~~~~~~~~~~~~~~~v~K~~~~ 320 (558)
T PRK10669 249 SFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMI--LIQQPLAVLATLAIIVFGKSLAA 320 (558)
T ss_pred cHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666665421 222333333334567789999999999987631 11222333445556666677777
Q ss_pred HHHHHHhCCch--HHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHH
Q 010956 431 AAASIAVGLRG--VLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYY 492 (497)
Q Consensus 431 l~l~~lLgLd~--~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~~ 492 (497)
++.+..++.+. -....+.+..--..+.....++.++|.=.+...+.+++.++++..++.+++
T Consensus 321 ~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~ 384 (558)
T PRK10669 321 FFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF 384 (558)
T ss_pred HHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777653 222222232334555666666677776666666677777777765554443
No 26
>COG2855 Predicted membrane protein [Function unknown]
Probab=90.85 E-value=2.4 Score=44.91 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHH
Q 010956 352 PNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMA 431 (497)
Q Consensus 352 P~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal 431 (497)
++++|+++|+++..+ .+.|+-...-++.=.+.-..++...+|..+..+. ...-+. ..+...+.-+...-++++
T Consensus 39 al~lAIllGi~l~~l-----~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~-i~~~G~-~~v~~~~~~l~~t~~~~~ 111 (334)
T COG2855 39 ALTLAILLGILLGIL-----PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSD-IADVGG-SGVLIIAITLSSTFLFAY 111 (334)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhhccchhhhHHHHHHHHHHHHcceeeHHH-HHHcCc-cHHHHHHHHHHHHHHHHH
Confidence 899999999999954 4667777778888888899999999999998742 212222 223333344444445566
Q ss_pred HHHHHhCCchHHHHHHHHhhccchhhHHHHHHH--HhCCChhhHHHHHHHHHHHH---HHHHHHHHHHhc
Q 010956 432 AASIAVGLRGVLLHVAIVQAALPQGIVPFVFAK--EYNVHPDILSTGVIFGMLIA---LPITLVYYILLG 496 (497)
Q Consensus 432 ~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~--eYg~d~elASs~V~~STLLS---LPi~lv~~iLLg 496 (497)
.+..++|+|.... +++-++.-.--.+.+.|. --+.+++..+.+|..-++++ +.+.++.|-+++
T Consensus 112 ~lg~~lgld~~~a--~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 112 FLGKLLGLDKKLA--LLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred HHHHHhCCCHHHH--HHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 6667889886432 222222222222333333 34566666666665555543 455566666655
No 27
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=90.52 E-value=3.8 Score=43.03 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhhhcCCC-CCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 010956 354 TYSSLIGLVWSLVSFRWNV-QMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAA 432 (497)
Q Consensus 354 IiAiILGLIlsLl~fr~gI-~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~ 432 (497)
++=+++|.+++-+- + ++ +.=....+.+-.=...-+.+-+|+.|.++.. |......|+-...++.|+++.-++.++
T Consensus 16 vVPLllgalinTf~-P-~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~--k~~~~~lkkg~~ll~~K~~~~~~lgl~ 91 (314)
T PF03812_consen 16 VVPLLLGALINTFF-P-NALEIIGGFTTALFTGANPIIGVFLFCMGAQIDL--KSAGKVLKKGGVLLLVKFIIGALLGLL 91 (314)
T ss_pred HHHHHHHHHHHhcC-C-ChhhccCcHHHHHHcchHHHHHHHHHHhccccch--hhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 55566676666551 0 11 1001122222222345566778999999987 344456788888899999999999999
Q ss_pred HHHHhCCchH------HHHHHHHhhccchhhHH--HHHHHHhCCChhhHHHH
Q 010956 433 ASIAVGLRGV------LLHVAIVQAALPQGIVP--FVFAKEYNVHPDILSTG 476 (497)
Q Consensus 433 l~~lLgLd~~------ll~VaIL~AAmP~Ai~s--~VfA~eYg~d~elASs~ 476 (497)
+.+++|.++. -...+.+.+||-..... .-+..+||-+.|..+..
T Consensus 92 ~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~~ 143 (314)
T PF03812_consen 92 VGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGAFS 143 (314)
T ss_pred HHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHHH
Confidence 9999998874 24455555666544333 33467898776665443
No 28
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=90.34 E-value=7.1 Score=45.79 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=52.7
Q ss_pred HHhhchhHHHHHHHHHHHHhhhcCCCCCcHHH---HHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHH
Q 010956 347 KLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIV---AKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRF 423 (497)
Q Consensus 347 kLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I---~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRL 423 (497)
++-..-+++.+++|+++...++ ++--|.-. ...+-.+...++.+.||..|+.|.. +..+..++.++..+++=+
T Consensus 35 Rl~Ls~~~v~Ll~GiilGP~~l--~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~--~~Lrr~wrsV~rLl~~~M 110 (810)
T TIGR00844 35 KLYIGESMVASIFGLIVGPHCL--NWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPR--KYMLKHWVSVTMLLVPVM 110 (810)
T ss_pred hcCCcHHHHHHHHHHHhhhhhh--ccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHhHHHHHHHHHHHH
Confidence 3344567888999999887633 22112111 1222237888999999999999986 334455555555554444
Q ss_pred HHHHHHHHHHHH-H-hCCc
Q 010956 424 LTGPAVMAAASI-A-VGLR 440 (497)
Q Consensus 424 LV~PLLal~l~~-l-LgLd 440 (497)
.+.=+++.++++ + ++++
T Consensus 111 ~lT~livAL~a~~Li~GL~ 129 (810)
T TIGR00844 111 TSGWLVIALFVWILVPGLN 129 (810)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 444444444443 2 3555
No 29
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=90.24 E-value=7.3 Score=41.63 Aligned_cols=128 Identities=15% Similarity=0.195 Sum_probs=72.1
Q ss_pred HHHHHhhchhHHHHHHH-HHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHH
Q 010956 344 VWRKLIRNPNTYSSLIG-LVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVR 422 (497)
Q Consensus 344 vlkkLLrNP~IiAiILG-LIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvR 422 (497)
..++ ++-|++++.+++ +++.-. +.-.+..-.+.++.++..+.-+-||.+|+..+.. ..++..+.+....+.-
T Consensus 24 l~~r-l~lp~vlg~llaGiilGp~----~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~--~l~~~~~~~~~~~~~~ 96 (397)
T COG0475 24 LFKR-LGLPPVLGYLLAGIILGPW----GLLLIIESSEIIELLAELGVVFLLFLIGLEFDLE--RLKKVGRSVGLGVAQV 96 (397)
T ss_pred HHHH-cCCchHHHHHHHHHhcCcc----cccccCCchHHHHHHHHHhHHHHHHHHHHCcCHH--HHHHhchhhhhhHHHH
Confidence 3444 788998887754 444421 2333444567888999999999999999999873 3333344434445555
Q ss_pred HHHHHHHHHH-HHH-HhCCchHHHHH-HHHhhccchhhHHHHHHHHhCCChhhHHHHHHH
Q 010956 423 FLTGPAVMAA-ASI-AVGLRGVLLHV-AIVQAALPQGIVPFVFAKEYNVHPDILSTGVIF 479 (497)
Q Consensus 423 LLV~PLLal~-l~~-lLgLd~~ll~V-aIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~ 479 (497)
.+..|.+... ... .++++....-. ....+..-+++..-++. ++|.......+.++.
T Consensus 97 ~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~-e~~~~~~~~g~~~l~ 155 (397)
T COG0475 97 GLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILM-ELGLLKTREGQLILG 155 (397)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHH-HhccccchHHHHHHH
Confidence 5566644433 222 36776554333 33333344445555544 454444444444333
No 30
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=90.19 E-value=1.9 Score=45.20 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 010956 353 NTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAA 432 (497)
Q Consensus 353 ~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~ 432 (497)
.++++++|+++.-+ .-.+|+.+...+.. .+|+.-|.+|..+..+ .....+..-++..+++=.+...+. +.
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~-~I~~~G~~GIlL~v~vv~~t~~~~-~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLS-MLLQAGLAGILLGVLVTIVTGFFN-IF 238 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHH-HHHHhChHHHHHHHHHHHHHHHHH-HH
Confidence 67888888888644 22466776666665 8899999999999885 334455555555555544444433 44
Q ss_pred HHHHhCCchHH
Q 010956 433 ASIAVGLRGVL 443 (497)
Q Consensus 433 l~~lLgLd~~l 443 (497)
+..+++.++..
T Consensus 239 i~rllg~~~~~ 249 (312)
T PRK12460 239 ADRLVGGTGIA 249 (312)
T ss_pred HHHHhCCChhH
Confidence 44777887654
No 31
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.77 E-value=14 Score=41.51 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=64.3
Q ss_pred HHHHHHhhchhHHHHH-HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHH
Q 010956 343 MVWRKLIRNPNTYSSL-IGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAV 421 (497)
Q Consensus 343 ~vlkkLLrNP~IiAiI-LGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lv 421 (497)
.+.++ ++-|.+++.+ +|+++.-.++ ++ ++. .+.+..++..+..+.||.+|+.+... ..+...+.++.....
T Consensus 22 ~l~~r-l~~p~ilg~ilaGillGP~~l--g~-i~~--~~~i~~laelGvv~LLF~iGLel~~~--~l~~~~~~~~~~g~~ 93 (601)
T PRK03659 22 PLAQR-LGIGAVLGYLLAGIAIGPWGL--GF-ISD--VDEILHFSELGVVFLMFIIGLELNPS--KLWQLRRSIFGVGAA 93 (601)
T ss_pred HHHHH-hCCChHHHHHHHHHHhccccc--cC-CCc--HHHHHHHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHH
Confidence 34455 6788888875 4666643211 22 111 13466889999999999999999873 233334444444455
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHH-HHHhhccchhhHHHHHHHH
Q 010956 422 RFLTGPAVMAAASIAVGLRGVLLHV-AIVQAALPQGIVPFVFAKE 465 (497)
Q Consensus 422 RLLV~PLLal~l~~lLgLd~~ll~V-aIL~AAmP~Ai~s~VfA~e 465 (497)
-+++.-++..++.+++|++.....+ .+..+...+++..-++.++
T Consensus 94 ~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~ 138 (601)
T PRK03659 94 QVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREK 138 (601)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5544444444555567776432222 2223334555555555443
No 32
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=88.41 E-value=5.3 Score=42.19 Aligned_cols=90 Identities=10% Similarity=0.023 Sum_probs=54.6
Q ss_pred hhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHH
Q 010956 349 IRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPA 428 (497)
Q Consensus 349 LrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PL 428 (497)
-.++.++|+++|+++.-. .....|+....-++.-.+-..=++...+|..+..+. ...-+.+.+...+++ ++..=+
T Consensus 30 ~l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~-i~~~G~~~l~~~~~~-v~~~~~ 104 (335)
T TIGR00698 30 ALSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPY-IADVGPNEIVADTLI-LTSTFF 104 (335)
T ss_pred CCcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHH-HHHhhHHHHHHHHHH-HHHHHH
Confidence 367788999999998743 012466666777788888888899999999998742 222233332222222 222222
Q ss_pred HHHHHH-HHhCCchHH
Q 010956 429 VMAAAS-IAVGLRGVL 443 (497)
Q Consensus 429 Lal~l~-~lLgLd~~l 443 (497)
+.+.+. ..+++|...
T Consensus 105 ~~~~~g~k~l~l~~~~ 120 (335)
T TIGR00698 105 LTVFLGSSRLKLDKQM 120 (335)
T ss_pred HHHHHHHHHhCCChhH
Confidence 223333 578888653
No 33
>PRK05326 potassium/proton antiporter; Reviewed
Probab=86.75 E-value=17 Score=40.37 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=66.3
Q ss_pred HHHHHHHhhchhHHHH-HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHH
Q 010956 342 IMVWRKLIRNPNTYSS-LIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMA 420 (497)
Q Consensus 342 k~vlkkLLrNP~IiAi-ILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~l 420 (497)
....++ ++-|.+++. ++|+++.-.++. .+.... .+.++.++..+.++.||..|+.+.. +..+...+.++....
T Consensus 22 ~~l~~r-~~~P~ll~~il~GillGp~~lg-~i~~~~--~~~~~~i~~l~L~~iLF~~Gl~~~~--~~l~~~~~~~~~la~ 95 (562)
T PRK05326 22 SRLSSR-LGIPSLLLFLAIGMLAGEDGLG-GIQFDN--YPLAYLVGNLALAVILFDGGLRTRW--SSFRPALGPALSLAT 95 (562)
T ss_pred HHHHHH-cCCcHHHHHHHHHHHhCccccC-CcccCc--HHHHHHHHHHHHHHHHHcCccCCCH--HHHHHHHHHHHHHHH
Confidence 444555 577766665 467776654221 022221 2467889999999999999999886 334444555554444
Q ss_pred HHHHHHHHHH--HHHHHHhCCchHHH--HHHHHhhccchhhHHHHHHHHhC--CChhhHH
Q 010956 421 VRFLTGPAVM--AAASIAVGLRGVLL--HVAIVQAALPQGIVPFVFAKEYN--VHPDILS 474 (497)
Q Consensus 421 vRLLV~PLLa--l~l~~lLgLd~~ll--~VaIL~AAmP~Ai~s~VfA~eYg--~d~elAS 474 (497)
+-.++ |.+. +++.++++++.... -.+++.+.-|+++.. +-++.+ .+.+..+
T Consensus 96 ~gv~~-t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~--iL~~~~l~l~~~v~~ 152 (562)
T PRK05326 96 LGVLI-TAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFS--LLRGKGLNLKERVAS 152 (562)
T ss_pred HHHHH-HHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHH--HHhccCCCcchhHHh
Confidence 44433 3333 33445677754322 222222333333333 234566 5555443
No 34
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=82.51 E-value=4.7 Score=42.35 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=59.8
Q ss_pred HhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHH-HHHHHHhhccchhhHHHHH---
Q 010956 387 DAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVL-LHVAIVQAALPQGIVPFVF--- 462 (497)
Q Consensus 387 ~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~l-l~VaIL~AAmP~Ai~s~Vf--- 462 (497)
..-+.+-+|+.|.++..+ ......++-....+.|+++.-++.+++..++|.++.. ...+.+.+||=- .|.-+|
T Consensus 48 ~~il~~~~~~~Ga~I~~k--~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~~-~Ng~ly~al 124 (312)
T PRK12460 48 APLLGAFLLCMGAQISLK--AAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMSN-SNGGLYAAL 124 (312)
T ss_pred HHHHHHHHHHhcCeeecc--ccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHhc-CcHHHHHHH
Confidence 345556789999999873 3334467777788899999999999999999988753 344444455433 334444
Q ss_pred HHHhCCChhhHHHH
Q 010956 463 AKEYNVHPDILSTG 476 (497)
Q Consensus 463 A~eYg~d~elASs~ 476 (497)
+.+||-+.|..+..
T Consensus 125 ~~~yG~~~d~gA~~ 138 (312)
T PRK12460 125 MGEFGDERDVGAIS 138 (312)
T ss_pred HHHcCCHhhhhHHh
Confidence 78998776655443
No 35
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=81.67 E-value=45 Score=31.05 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=61.3
Q ss_pred Hhhch--hHHH-HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhhcchhHHHHHHHHHH
Q 010956 348 LIRNP--NTYS-SLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIACGNSIAAFSMAVRF 423 (497)
Q Consensus 348 LLrNP--~IiA-iILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~~~~k~il~~~lvRL 423 (497)
.++-| .+++ ++++.++++.+. .++++|..+....+.+-. ..+|..+.... +..++.....+...++=+
T Consensus 16 ~l~~Pa~~llG~mi~~~~~~~~~~-~~~~~P~~~~~~~qviiG-------~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l 87 (156)
T TIGR03082 16 LLGLPAAWLLGPLLAGAVLSLAGG-LEITLPPWLLALAQVVIG-------ILIGSRFTREVLAELKRLWPAALLSTVLLL 87 (156)
T ss_pred HHCCCcHHHHHHHHHHHHHHhcCC-ccCCCCHHHHHHHHHHHH-------HHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 3443 445555565521 246788766655443322 23455554321 111222222333333333
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHH-HHHHHHhCCChhhHHHH
Q 010956 424 LTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVP-FVFAKEYNVHPDILSTG 476 (497)
Q Consensus 424 LV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s-~VfA~eYg~d~elASs~ 476 (497)
++.=+..+.+.++.++|.. ..+.+.+|-|... .++|+++|.|+...+..
T Consensus 88 ~~~~~~~~~l~~~~~~~~~----ta~La~~PGGl~~m~~~A~~~gad~~~V~~~ 137 (156)
T TIGR03082 88 ALSALLAWLLARLTGVDPL----TAFLATSPGGASEMAALAAELGADVAFVAAM 137 (156)
T ss_pred HHHHHHHHHHHHHHCCCHH----HHHHHhCCchHHHHHHHHHHhCCCHHHHHHH
Confidence 4444444455556676653 3356789988554 55799999998877654
No 36
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=80.96 E-value=62 Score=35.40 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=56.4
Q ss_pred CCCCcHHHHHHHHHHHHh------HHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Q 010956 371 NVQMPAIVAKSISILSDA------GLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLL 444 (497)
Q Consensus 371 gI~LP~~I~~sL~iLG~A------atPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll 444 (497)
...+|+.+.+.+.-++.. .+-+.++.+|++|+.. ..=+++.|++ +.+...+|+|+.+.
T Consensus 294 ~~gvp~~i~~~i~~~~~~~~~~Ll~i~~~~lvlGmfld~~---------------a~ili~~Pil-~Pi~~~~Gidpv~f 357 (425)
T PRK15060 294 IAELPMMVSDLLQPLVDSPRLLFIVIMVAIMVVGMVMDLT---------------PTVLILTPVL-MPLVKEAGIDPIYF 357 (425)
T ss_pred HcChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhHH---------------HHHHHHHHHH-HHHHHHcCCChHHH
Confidence 346787777777666532 2223445556655431 1223455554 34455689999887
Q ss_pred HHHHHhh------ccchhhHHHHHHHHhCCChhhHHHHHH
Q 010956 445 HVAIVQA------ALPQGIVPFVFAKEYNVHPDILSTGVI 478 (497)
Q Consensus 445 ~VaIL~A------AmP~Ai~s~VfA~eYg~d~elASs~V~ 478 (497)
.++++.. .=|.|.+.++.+.-.+.+.+.....+.
T Consensus 358 gii~~~~~~ig~iTPPvG~~lfv~~~ia~~~~~~i~~~~~ 397 (425)
T PRK15060 358 GVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGVF 397 (425)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHhcCCCHHHHHHHHH
Confidence 7765543 347889999988888877766554443
No 37
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=80.95 E-value=31 Score=36.64 Aligned_cols=105 Identities=15% Similarity=0.050 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHH
Q 010956 340 ILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSM 419 (497)
Q Consensus 340 ilk~vlkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~ 419 (497)
.++++++..++|+-++..+-|+++-++.-..++ +.+......+=+...-+-|+-+|+.-+++-+ .+|+.-...
T Consensus 166 ~~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~---~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~----~l~~~g~~l 238 (327)
T PF05982_consen 166 SWGELLHESLTNKSVVLLLGGLIIGFLAGPEGV---ESIKPFFVDLFKGVLCLFLLEMGLVAARRLR----DLRKVGWFL 238 (327)
T ss_pred cHHHHHHHHHcCchHHHHHHHHHHhheeCccch---hhccchhhccHHHHHHHHHHHhhHHHHHhhH----HHHhhhHHH
Confidence 488999999999999999999999877322122 1222333333334455555666666554322 233333333
Q ss_pred HHHHHHHHHHH----HHHHHHhCCchHHHHHHHHhh
Q 010956 420 AVRFLTGPAVM----AAASIAVGLRGVLLHVAIVQA 451 (497)
Q Consensus 420 lvRLLV~PLLa----l~l~~lLgLd~~ll~VaIL~A 451 (497)
+.==+++|++. +++.+++|++.--...+.+++
T Consensus 239 i~Fgi~~Pli~a~ig~~lg~~~gls~Gg~~llavLa 274 (327)
T PF05982_consen 239 IAFGILMPLINALIGIGLGWLLGLSPGGAVLLAVLA 274 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHH
Confidence 33334555554 444566777653333333333
No 38
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=78.83 E-value=13 Score=38.79 Aligned_cols=112 Identities=18% Similarity=0.089 Sum_probs=74.2
Q ss_pred HHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHH---HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchh
Q 010956 380 KSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIA---AFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQG 456 (497)
Q Consensus 380 ~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~i---l~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~A 456 (497)
+....++..+....++.+-...+.+.+.+......+ ...+++=.++.-.+.+.+...++++....+++.++.++=-+
T Consensus 210 ~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~ 289 (328)
T TIGR00832 210 VFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNF 289 (328)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhH
Confidence 344444444444333333333333322233332222 22445667777788888888999999999999999999888
Q ss_pred hHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHH
Q 010956 457 IVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY 491 (497)
Q Consensus 457 i~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~ 491 (497)
..+..+|..+=.+++.++...+.+.++=+|.++.+
T Consensus 290 ~lai~lA~~~f~~~~~~a~~~~~~~l~e~~~~~~~ 324 (328)
T TIGR00832 290 ELAIAVAISLFGLNSGAALATVVGPLIEVPVMLSL 324 (328)
T ss_pred HHHHHHHHHhCCCCcccHHHHHhhhhhehhhhhee
Confidence 88888888775556788888888888888876554
No 39
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=78.55 E-value=93 Score=33.45 Aligned_cols=131 Identities=17% Similarity=0.110 Sum_probs=74.4
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHH--HHHHHHHHHHH
Q 010956 350 RNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAA--FSMAVRFLTGP 427 (497)
Q Consensus 350 rNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il--~~~lvRLLV~P 427 (497)
..|++++++++++++-++ -++.|. -...-+.+.+-.+|++++.+=+..+.+ +..+...|... ....+=.+++-
T Consensus 25 l~~~vl~~~~~~~lsnlg---li~~p~-~s~~y~~v~~~~vPlai~LlLl~~Dlr-~i~~~g~~~l~~F~~~~~g~viG~ 99 (378)
T PF05684_consen 25 LPGAVLCYLLGMLLSNLG---LIDSPA-SSPVYDFVWTYLVPLAIPLLLLSADLR-RILRLGGRLLLAFLIGAVGTVIGA 99 (378)
T ss_pred cCHHHHHHHHHHHHHHCC---CcCCCC-cchHHHHHHHHHHHHHHHHHHHHccHH-HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 578999999999999873 131231 233445566777888877766666553 23333333222 22223333333
Q ss_pred HHHHHHHHHhCCchHHHHHHHHhhccchh--hHHHHHHHHhCCChhhHHHHHHHHHHHHHH
Q 010956 428 AVMAAASIAVGLRGVLLHVAIVQAALPQG--IVPFVFAKEYNVHPDILSTGVIFGMLIALP 486 (497)
Q Consensus 428 LLal~l~~lLgLd~~ll~VaIL~AAmP~A--i~s~VfA~eYg~d~elASs~V~~STLLSLP 486 (497)
++++.+.... +.++..+++-.+++.=+| +|-.-+++.++.+++..+.++..-.+++-+
T Consensus 100 ~va~~l~~~~-l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~ 159 (378)
T PF05684_consen 100 VVAFLLFGGF-LGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMAL 159 (378)
T ss_pred HHHHHHHhhc-ccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3333332222 223444444444443333 666777888999998888888888877643
No 40
>COG3329 Predicted permease [General function prediction only]
Probab=77.51 E-value=16 Score=38.77 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccc
Q 010956 339 LILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQ 404 (497)
Q Consensus 339 ~ilk~vlkkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~ 404 (497)
...|++++..+.||-+..++.|+++.++. +-+--+.++.+..-+=+-..-+-|+.+|+.-..+
T Consensus 205 v~~~ell~Esflnpal~lllggl~iGlit---Ge~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rr 267 (372)
T COG3329 205 VKIWELLQESFLNPALVLLLGGLAIGLIT---GEQGESVLKPFFDPLFQGVLCLFLLDMGMTAGRR 267 (372)
T ss_pred hhhHHHHHHHHcCchHHHHHHHHHHhhee---ccCchhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 56788999999999999999999998873 3344455666777777788888899999987653
No 41
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=74.93 E-value=6 Score=41.55 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCch-----H-HHHHHHHhhccchhhHHHH
Q 010956 388 AGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRG-----V-LLHVAIVQAALPQGIVPFV 461 (497)
Q Consensus 388 AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~-----~-ll~VaIL~AAmP~Ai~s~V 461 (497)
.-+.+-+|+.|.++..+ ......++-....+.|+++.-++.+++..++|.++ . -...+.+.+||=- .|.-+
T Consensus 49 ~il~~~l~~~Ga~I~~k--~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~n-sNggL 125 (314)
T TIGR00793 49 PILAVWFFCMGASIDLS--ATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDM-TNGGL 125 (314)
T ss_pred HHHHHHHHHhCCeeeec--ccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhC-CcHHH
Confidence 44556688999999873 22344566677778999999999999999999876 2 2344444455533 33334
Q ss_pred H---HHHhCCChhhHHHH
Q 010956 462 F---AKEYNVHPDILSTG 476 (497)
Q Consensus 462 f---A~eYg~d~elASs~ 476 (497)
| +.+||-+.|..+..
T Consensus 126 Y~aL~~qyGd~~D~gA~~ 143 (314)
T TIGR00793 126 YASIMQQYGTKEEAGAFV 143 (314)
T ss_pred HHHHHHHcCCHhhhhhhh
Confidence 4 88998776655433
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=73.74 E-value=1.3e+02 Score=32.15 Aligned_cols=50 Identities=30% Similarity=0.553 Sum_probs=36.3
Q ss_pred HHHhhccchhhHHHHH-------HHHhCCChhhHHHHHHHHHHHHHHHHHHH-HHHhc
Q 010956 447 AIVQAALPQGIVPFVF-------AKEYNVHPDILSTGVIFGMLIALPITLVY-YILLG 496 (497)
Q Consensus 447 aIL~AAmP~Ai~s~Vf-------A~eYg~d~elASs~V~~STLLSLPi~lv~-~iLLg 496 (497)
-.+..++|..+.++.+ ++.|+.|++....++.+++++.+.+.++| +.++|
T Consensus 184 ~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg 241 (394)
T PF03222_consen 184 SYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILG 241 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344778887776654 77899999999999999999876655444 34444
No 43
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=67.84 E-value=95 Score=32.41 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 010956 356 SSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIACGNSIAAFSMAVRFLTGPAVMAAAS 434 (497)
Q Consensus 356 AiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~~~~k~il~~~lvRLLV~PLLal~l~ 434 (497)
++++..++.+.+ +..+++|..+.+....+-. ..+|..+.... ......+.......++=+++.-+..+.+.
T Consensus 5 ~~ia~~~~~~~~-~~~~~~p~~~r~~~q~ilG-------~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (318)
T PF05145_consen 5 PMIAVIIAALFG-PLPLRVPRRLRNAGQAILG-------VSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLR 76 (318)
T ss_pred HHHHHHHHHHhC-CCccCCCHHHHHHHHHHHH-------HHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555552 2356777765543222111 22344443211 11111122222333333333333334444
Q ss_pred HHhCCchHHHHHHHHhhccchhh-HHHHHHHHhCCChhhHHH
Q 010956 435 IAVGLRGVLLHVAIVQAALPQGI-VPFVFAKEYNVHPDILST 475 (497)
Q Consensus 435 ~lLgLd~~ll~VaIL~AAmP~Ai-~s~VfA~eYg~d~elASs 475 (497)
..-++|.. .-+.+++|-|. -..++|+++|.|.+..+.
T Consensus 77 r~~~~d~~----TA~~~~~PGg~s~m~~la~~~gad~~~Va~ 114 (318)
T PF05145_consen 77 RISGLDRA----TAFFASMPGGLSEMVALAEEYGADTRRVAL 114 (318)
T ss_pred HHcCCChh----HHHHHcCCccHHHHHHHHHHcCCChhhhHH
Confidence 44455533 45568899884 455679999999876643
No 44
>PRK05326 potassium/proton antiporter; Reviewed
Probab=66.17 E-value=89 Score=34.81 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcch-hHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccc
Q 010956 376 AIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGN-SIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALP 454 (497)
Q Consensus 376 ~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~-k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP 454 (497)
..+.+..+.++....++..+.+|+.+... ...... ..+....++-++.-|+..++....++++. ...+++-.+.|
T Consensus 266 ~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~--~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~--~e~~~i~~~g~ 341 (562)
T PRK05326 266 HSILRFFDGLAWLAQIGMFLVLGLLVTPS--RLLDIALPALLLALFLILVARPLAVFLSLLPFRFNL--REKLFISWVGL 341 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCH--hhhheeeeecc
Confidence 35667777788888888889999988652 111111 11222223334444555555555555543 33344444567
Q ss_pred hhhHHHHHHH
Q 010956 455 QGIVPFVFAK 464 (497)
Q Consensus 455 ~Ai~s~VfA~ 464 (497)
-|.++.++|.
T Consensus 342 RG~v~i~lA~ 351 (562)
T PRK05326 342 RGAVPIVLAT 351 (562)
T ss_pred hhHHHHHHHH
Confidence 7777777764
No 45
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=65.77 E-value=1.8e+02 Score=33.49 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=29.4
Q ss_pred HHHHhCCchHHHHHHHHhhc-----c-chhhHHHHHHHHhCCChhhHH
Q 010956 433 ASIAVGLRGVLLHVAIVQAA-----L-PQGIVPFVFAKEYNVHPDILS 474 (497)
Q Consensus 433 l~~lLgLd~~ll~VaIL~AA-----m-P~Ai~s~VfA~eYg~d~elAS 474 (497)
+...+|+|+...++.++..+ + |.|.+.++.+.--|.++....
T Consensus 462 ~l~~lGidpi~~~~~v~~~~~ig~iTPPvgl~lfvaa~Ia~~~~~~~~ 509 (613)
T TIGR02123 462 ALIALGVPPIAAHMFVFYFGILADITPPVALAAFAAAGIAGADPMKTG 509 (613)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHHhhcCCCHHHHH
Confidence 33457999987776665433 3 778888888888888866554
No 46
>PRK03818 putative transporter; Validated
Probab=65.13 E-value=1.7e+02 Score=32.98 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhh-cchhHHHHHHHHHHHHHHHHHH
Q 010956 354 TYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIA-CGNSIAAFSMAVRFLTGPAVMA 431 (497)
Q Consensus 354 IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~-~~~k~il~~~lvRLLV~PLLal 431 (497)
.-.++.|+++..++.+.++++|......++ +...-+=++++|+.-..+. ...+ .+++..+..++ =.++..++.+
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~---~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~-~~~~~~~~~~ 109 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQ---EFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVL-IVILGGLVTA 109 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHH---HHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHH
Confidence 345566777666221126677776555544 4445555666777665433 1222 23344443333 2333344556
Q ss_pred HHHHHhCCchHHHHHHH
Q 010956 432 AASIAVGLRGVLLHVAI 448 (497)
Q Consensus 432 ~l~~lLgLd~~ll~VaI 448 (497)
++.++++++.....-++
T Consensus 110 ~~~~~~~~~~~~~~G~~ 126 (552)
T PRK03818 110 ILHKLFGIPLPVMLGIF 126 (552)
T ss_pred HHHHHhCCCHHHHHHHh
Confidence 66778899876443333
No 47
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=64.71 E-value=82 Score=37.36 Aligned_cols=84 Identities=12% Similarity=-0.033 Sum_probs=54.3
Q ss_pred HHHHHHHhHHHHHHHHHhHhcccchh----hhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchh
Q 010956 381 SISILSDAGLGMAMFSLGLFMALQPR----IIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQG 456 (497)
Q Consensus 381 sL~iLG~AatPLALf~LGlsLa~~~k----~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~A 456 (497)
+...+......+.++.+|+.+....- .....++.+++++++=|+.-|++++++..+++....+...+++--.=|-|
T Consensus 292 f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWFGpRG 371 (810)
T TIGR00844 292 VSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHFGPIG 371 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheeecccc
Confidence 44455556667788899999864210 00123555666777777888877776655555444567777888888888
Q ss_pred hHHHHHHH
Q 010956 457 IVPFVFAK 464 (497)
Q Consensus 457 i~s~VfA~ 464 (497)
+.+.+|+.
T Consensus 372 IGSIyyl~ 379 (810)
T TIGR00844 372 VGAVFAAI 379 (810)
T ss_pred HHHHHHHH
Confidence 77776643
No 48
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=64.66 E-value=71 Score=35.98 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhhc-chhHHHHHHHHHHHHHHHHHHHH
Q 010956 356 SSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIAC-GNSIAAFSMAVRFLTGPAVMAAA 433 (497)
Q Consensus 356 AiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~~-~~k~il~~~lvRLLV~PLLal~l 433 (497)
..++|+++..+ ++++|+.+. ....-|=++++|+....++ +..++ +++..+.++++ .++.-++++++
T Consensus 41 vLfvgl~~G~~----g~~i~~~v~-------~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~-~~~~~~~~~~~ 108 (562)
T TIGR03802 41 SLIVAVLIGQL----GIQIDPGVK-------AVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVF-AVSGLITVYAL 108 (562)
T ss_pred HHHHHHHHHhc----CCCCChHHH-------HHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHH
Confidence 44555555555 667776533 3445555667777776543 22233 34555444433 44555677788
Q ss_pred HHHhCCchHHHHHHH
Q 010956 434 SIAVGLRGVLLHVAI 448 (497)
Q Consensus 434 ~~lLgLd~~ll~VaI 448 (497)
.++++++.....-++
T Consensus 109 ~~~~g~~~~~~~Gl~ 123 (562)
T TIGR03802 109 AKIFGLDKGTAAGLA 123 (562)
T ss_pred HHHhCCCHHHHHHHH
Confidence 889999865444333
No 49
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=64.00 E-value=16 Score=37.18 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=61.1
Q ss_pred HHHHhHhcccch-hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh---CCchHHHHHHHHhhccchhhHHHH-HHHHhCC
Q 010956 394 MFSLGLFMALQP-RIIACGNSIAAFSMAVRFLTGPAVMAAASIAV---GLRGVLLHVAIVQAALPQGIVPFV-FAKEYNV 468 (497)
Q Consensus 394 Lf~LGlsLa~~~-k~i~~~~k~il~~~lvRLLV~PLLal~l~~lL---gLd~~ll~VaIL~AAmP~Ai~s~V-fA~eYg~ 468 (497)
.|.-|+.|.... -....+|+.-+++...-+++.|...++++.+. +.+..+..-+.+.++||+.+.+.+ +.+..|+
T Consensus 64 F~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGG 143 (287)
T KOG4821|consen 64 FLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGG 143 (287)
T ss_pred EeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCc
Confidence 344465554311 11124577778888899999999999988765 356678899999999999976655 4556666
Q ss_pred ChhhHHHHHHHHHHHHHHH
Q 010956 469 HPDILSTGVIFGMLIALPI 487 (497)
Q Consensus 469 d~elASs~V~~STLLSLPi 487 (497)
++ +++.+.|.++++-+
T Consensus 144 Na---~A~~v~S~f~g~L~ 159 (287)
T KOG4821|consen 144 NA---SALCVCSVFIGNLL 159 (287)
T ss_pred cH---HHHHHHHHHHHHHh
Confidence 64 44555555555433
No 50
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=63.07 E-value=1.9e+02 Score=31.43 Aligned_cols=101 Identities=24% Similarity=0.385 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh------HHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHH
Q 010956 357 SLIGLVWSLVSFRWNVQMPAIVAKSISILSDA------GLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVM 430 (497)
Q Consensus 357 iILGLIlsLl~fr~gI~LP~~I~~sL~iLG~A------atPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLa 430 (497)
....+.|.+. .-++|+.+.+.+..+.+. .+-+.++.+|++|+..+ .=+++.|.++
T Consensus 238 ~a~~f~~~lt----~~~vp~~la~~~~~~~~~~~~~ll~inl~llvvG~fmd~~a---------------~ilil~Pil~ 298 (379)
T COG1593 238 AAAAFAWLLT----VEQVPQQLADWLLSLSDSPLVVLLVINLLLLVVGTFMDLTA---------------AILILTPILL 298 (379)
T ss_pred HHHHHHHHHH----HhccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccHHH---------------HHHHHHHHHH
Confidence 3333444454 557899998888877654 44566788899887632 2245556543
Q ss_pred HHHHHHhCCchHHHHHHHHhhc------cchhhHHHHHHHHhCCChhhHHHHH
Q 010956 431 AAASIAVGLRGVLLHVAIVQAA------LPQGIVPFVFAKEYNVHPDILSTGV 477 (497)
Q Consensus 431 l~l~~lLgLd~~ll~VaIL~AA------mP~Ai~s~VfA~eYg~d~elASs~V 477 (497)
.+...+|+|+....+.++... =|.|.+-++-+.--+...+.....+
T Consensus 299 -Pi~~~~GIDPvhfGvv~v~Nl~IGliTPPvG~~Lfv~s~V~~~~~~~~~k~i 350 (379)
T COG1593 299 -PIAAALGIDPVHFGVVFVLNLSIGLITPPVGMVLFVASAVGKVPIEAVIKAI 350 (379)
T ss_pred -HHHHHhCCCceeeHHHHHHHHHhhCCCCCcchhHHHHHhhcCCCHHHHHHHH
Confidence 445567999987777666543 3788888888888887776665544
No 51
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=62.62 E-value=1.3e+02 Score=30.64 Aligned_cols=53 Identities=9% Similarity=-0.035 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHHh
Q 010956 414 IAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEY 466 (497)
Q Consensus 414 ~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eY 466 (497)
.+...+++=.++.-++.+.+..+++++....+++.++.++==...+..+|..+
T Consensus 196 ~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~lal~la~~~ 248 (286)
T TIGR00841 196 LLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQLCSTIAQLS 248 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHHHHHHHHHh
Confidence 33444444445555556666667889988888889999998887888888876
No 52
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=61.52 E-value=2.1e+02 Score=29.88 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=63.6
Q ss_pred hhch--hHHHH-HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhhcchhHHHHHHHHHHH
Q 010956 349 IRNP--NTYSS-LIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIACGNSIAAFSMAVRFL 424 (497)
Q Consensus 349 LrNP--~IiAi-ILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~~~~k~il~~~lvRLL 424 (497)
++-| .+++. +++.+++.++. ....+|.++....+.+-. ..+|..+.... +..++.....+...++=++
T Consensus 174 l~iPa~~llGpml~~a~~~~~~~-~~~~~P~~l~~~aqv~iG-------~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~ 245 (318)
T PF05145_consen 174 LRIPAPWLLGPMLVSAILNLFGG-PSFSLPPWLVNAAQVLIG-------ASIGSRFTRETLRELRRLLPPALLSTLLLLA 245 (318)
T ss_pred hCCCcHHHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH-------HHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544 34444 44455555421 246778766555443322 23455554422 2222222333344444444
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHH-HHHHHhCCChhhHHHHH
Q 010956 425 TGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPF-VFAKEYNVHPDILSTGV 477 (497)
Q Consensus 425 V~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~-VfA~eYg~d~elASs~V 477 (497)
+.-++++++.++.++|-. ..+.+..|-|+... ++|...|.|+.+.+..=
T Consensus 246 ~~~~~a~~l~~~~~~~~~----t~~La~aPGGl~eM~l~A~~l~~d~~~V~~~q 295 (318)
T PF05145_consen 246 LCALFAWLLSRLTGIDFL----TALLATAPGGLAEMALIALALGADVAFVAAHQ 295 (318)
T ss_pred HHHHHHHHHHHHHCCCHH----HHHHHhCCccHHHHHHHHHHcCCChHHHHHHH
Confidence 555555666666777754 55667889996654 45889999988776543
No 53
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=60.94 E-value=2.4e+02 Score=30.31 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=37.2
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHH-hHHHHHHHHHhHhcccc
Q 010956 350 RNPNTYSSLIGLVWSLVSFRWNVQMP-AIVAKSISILSD-AGLGMAMFSLGLFMALQ 404 (497)
Q Consensus 350 rNP~IiAiILGLIlsLl~fr~gI~LP-~~I~~sL~iLG~-AatPLALf~LGlsLa~~ 404 (497)
-++.+=|.++|++++-. ..= .-+++-++.+++ .-+|+=.+.+|+.++..
T Consensus 243 ls~ilGAFlaGl~ls~~------~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~ 293 (397)
T COG0475 243 LSMILGAFLAGLLLSES------EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLG 293 (397)
T ss_pred hhHHHHHHHHHHHhccc------ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHH
Confidence 35666677777777654 222 478888899998 99999999999999873
No 54
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=60.60 E-value=1.7e+02 Score=31.80 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=23.1
Q ss_pred HhhccchhhHHHHHHHHhCCChhhHHHHHHHHHH
Q 010956 449 VQAALPQGIVPFVFAKEYNVHPDILSTGVIFGML 482 (497)
Q Consensus 449 L~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STL 482 (497)
+..+.=.|....++.+++|.||+.++.-++ ||+
T Consensus 398 ~~~~~~~G~~lp~~~~k~~~DPa~~s~p~i-tt~ 430 (449)
T TIGR00400 398 LTVAKILGGLLPIVAKLLKLDPALMSGPLI-TTI 430 (449)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhhhhhhHH-HHH
Confidence 344445567778889999999997766554 554
No 55
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=58.17 E-value=1.4e+02 Score=31.80 Aligned_cols=107 Identities=9% Similarity=0.017 Sum_probs=71.5
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhcc
Q 010956 374 MPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAAL 453 (497)
Q Consensus 374 LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAm 453 (497)
+|+++...-+.+.....-..++++....+............+...+.+-.+++=++.+.....+|+|....+++.++.+|
T Consensus 184 ~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~ 263 (319)
T COG0385 184 LPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGM 263 (319)
T ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeecc
Confidence 45666666666666666666666666665422111111224455556666777777788888899999999999999999
Q ss_pred chhhHHHHHHHHhCCChhhHHHHHHHH
Q 010956 454 PQGIVPFVFAKEYNVHPDILSTGVIFG 480 (497)
Q Consensus 454 P~Ai~s~VfA~eYg~d~elASs~V~~S 480 (497)
=.......+|..|-.++..+--.++++
T Consensus 264 qn~~lg~alA~~f~~~~~~alP~aif~ 290 (319)
T COG0385 264 QNLGLGAALAAAFFGNPLMALPLAIFS 290 (319)
T ss_pred ccHHHHHHHHHhcCCCchhHhHHHHHH
Confidence 999999999998755454443333333
No 56
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=57.37 E-value=2.4e+02 Score=30.53 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=42.3
Q ss_pred HHHHHHhHhcccch-----hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhh-HHHHHHHH
Q 010956 392 MAMFSLGLFMALQP-----RIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGI-VPFVFAKE 465 (497)
Q Consensus 392 LALf~LGlsLa~~~-----k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai-~s~VfA~e 465 (497)
++..++|+++.... ...+..+......++.=+++.-++.|.+...-.+|+. .-+.+++|-|. .-..+|++
T Consensus 62 ~~q~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~----Ta~~gs~PGgas~m~~iA~d 137 (352)
T COG3180 62 AGQVILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGN----TAFLGSSPGGASAMVSIAQD 137 (352)
T ss_pred HHHHHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----hhhHhcCCchHHHHHHHHHH
Confidence 34555666665421 1112223333334444444444444444443345543 23457788874 45567999
Q ss_pred hCCChhhHHHH
Q 010956 466 YNVHPDILSTG 476 (497)
Q Consensus 466 Yg~d~elASs~ 476 (497)
||.|....|-+
T Consensus 138 ~gAd~~~VAl~ 148 (352)
T COG3180 138 YGADLRLVALM 148 (352)
T ss_pred hCCChhHHHHH
Confidence 99998776543
No 57
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=55.64 E-value=2.8e+02 Score=31.40 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=37.5
Q ss_pred HHHHHhCCchHHHHHHHHh------hccchh---hHHHHHHHHhCCChhhH---HHHHHHHHH--HH-HHHHHHHHHHhc
Q 010956 432 AASIAVGLRGVLLHVAIVQ------AALPQG---IVPFVFAKEYNVHPDIL---STGVIFGML--IA-LPITLVYYILLG 496 (497)
Q Consensus 432 ~l~~lLgLd~~ll~VaIL~------AAmP~A---i~s~VfA~eYg~d~elA---Ss~V~~STL--LS-LPi~lv~~iLLg 496 (497)
.+..++|+++...+.+.=. ...|+. .....++++|+.|..+. |.++=.+.. ++ ..++++||.+||
T Consensus 420 Pm~~~lGisp~~t~~AyriGDs~tNiItP~~~y~~lil~~~~~y~k~~g~Gtl~s~mlPysi~~l~~w~~l~~~w~~~~g 499 (513)
T TIGR00819 420 PMFMLAGFAPAFAQAAFRIADSSTLIIAPMMPFFGLFLAFLMKYKKDAGLGTLISLMLPYPAFFLIAWIALFCAWVFVLG 499 (513)
T ss_pred HHHHHcCCCHHHHHHHHHHhchHHHhhccCcchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3345678888776665432 345766 77788899998875432 222222221 22 344556666656
Q ss_pred C
Q 010956 497 L 497 (497)
Q Consensus 497 l 497 (497)
|
T Consensus 500 l 500 (513)
T TIGR00819 500 L 500 (513)
T ss_pred C
Confidence 5
No 58
>PRK04972 putative transporter; Provisional
Probab=55.56 E-value=2.9e+02 Score=31.30 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhh-cchhHHHHHHHHHHHHHHHHHHHH
Q 010956 356 SSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIA-CGNSIAAFSMAVRFLTGPAVMAAA 433 (497)
Q Consensus 356 AiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~-~~~k~il~~~lvRLLV~PLLal~l 433 (497)
.+++|+++..+ +..+|..+. +...-+=++++|+.-..++ ...+ .+++..+.++ +=.++.-++++++
T Consensus 43 ~L~vgl~~g~~----~~~~~~~~~-------~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~ 110 (558)
T PRK04972 43 VLVVSLLLGQQ----HFSINTDAL-------NLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLAL-VMVGSALVIALGL 110 (558)
T ss_pred HHHHHHHHHhC----CCCCChHHH-------HHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHH
Confidence 34455555555 555665542 3344444555666655433 2222 2334444332 3333334555666
Q ss_pred HHHhCCchHHHHHHH
Q 010956 434 SIAVGLRGVLLHVAI 448 (497)
Q Consensus 434 ~~lLgLd~~ll~VaI 448 (497)
.++++++.....-++
T Consensus 111 ~~~~~~~~~~~~G~~ 125 (558)
T PRK04972 111 GKLFGWDIGLTAGML 125 (558)
T ss_pred HHHhCCCHHHHHHHh
Confidence 678999876444433
No 59
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=53.61 E-value=3.6e+02 Score=30.08 Aligned_cols=113 Identities=16% Similarity=0.104 Sum_probs=55.1
Q ss_pred hhchh-HHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHH
Q 010956 349 IRNPN-TYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGP 427 (497)
Q Consensus 349 LrNP~-IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~P 427 (497)
++-|. +.-+++|+++...+....+++... .+-....|..||.-|..+... ..++..+.+....+.= ++.+
T Consensus 20 ~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~------~~~~~~Lp~lLF~~g~~~~~~--~l~~~~~~i~~la~~~-vlit 90 (525)
T TIGR00831 20 IRLPYPIALILAGLLLGLAGLLPEVPLDRE------IVLFLFLPPLLFEAAMNTDLR--ELRENFRPIALIAFLL-VVVT 90 (525)
T ss_pred cCCCHHHHHHHHHHHHHhccccCCCCCCHH------HHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHH-HHHH
Confidence 46665 444556888775432222333332 223368899999999998863 3334344444333333 3333
Q ss_pred HHHH--HHHHHhCCch--HHHHHHHHhhccchhhHHHHHHHHhCCChhh
Q 010956 428 AVMA--AASIAVGLRG--VLLHVAIVQAALPQGIVPFVFAKEYNVHPDI 472 (497)
Q Consensus 428 LLal--~l~~lLgLd~--~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~el 472 (497)
.+.. ++.++++++- .....+++.+.-|+++.+. .++.+...+.
T Consensus 91 ~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~i--l~~~~~p~rl 137 (525)
T TIGR00831 91 TVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGT--FKSIRAPKKL 137 (525)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHH--HhcCCCCHHH
Confidence 3332 2223445442 2333333333334443332 4556665443
No 60
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=51.25 E-value=16 Score=31.13 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=29.7
Q ss_pred hhhhHhhhhcCCCCCcceEEEEECCCccccCCCCccccccccccCCcEEEE
Q 010956 48 RGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVT 98 (497)
Q Consensus 48 r~ak~li~~qfp~~a~si~s~~vd~dv~sl~g~~~l~t~ae~~~dg~~~v~ 98 (497)
.+||-||...+|+-++. ..|++.++- +|.|-.|.++ +++|||.|+
T Consensus 3 ~a~~~li~Rll~~~~~~-f~~~~~~~~---~~~d~F~l~~--~~~gki~I~ 47 (86)
T PF12971_consen 3 SAARGLIERLLPEHASQ-FTFELIPSS---NGKDVFELSS--ADNGKIVIR 47 (86)
T ss_dssp HHHHHHHHHHC-GGGGG-EEEEE---B---TTBEEEEEEE---SSS-EEEE
T ss_pred HHHHHHHHhhcccccce-EEEEEecCC---CCCCEEEEEe--CCCCeEEEE
Confidence 47899999999999999 778887763 3777655554 688996653
No 61
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=50.97 E-value=3.5e+02 Score=32.16 Aligned_cols=63 Identities=8% Similarity=-0.084 Sum_probs=33.6
Q ss_pred HHHHHHHH-HHhHHHHHHHHHhHhcccchhhhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Q 010956 378 VAKSISIL-SDAGLGMAMFSLGLFMALQPRIIACG--NSIAAFSMAVRFLTGPAVMAAASIAVGLRGV 442 (497)
Q Consensus 378 I~~sL~iL-G~AatPLALf~LGlsLa~~~k~i~~~--~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ 442 (497)
+.+-++.+ .+.-+|+-.+.+|+.+... .+... +..+...+++.++.--+..++.+.+++++..
T Consensus 315 l~ekle~~~~~lflPlFFv~vGl~idl~--~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~ 380 (832)
T PLN03159 315 LIEKLEDFVSGLLLPLFFAISGLKTNVT--KIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFR 380 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 34444444 5778899999999988762 22111 1222222333333333344555666777653
No 62
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=50.40 E-value=27 Score=35.79 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHhhhc-------------CCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhh---cchhHH
Q 010956 352 PNTYSSLIGLVWSLVSFR-------------WNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIA---CGNSIA 415 (497)
Q Consensus 352 P~IiAiILGLIlsLl~fr-------------~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~---~~~k~i 415 (497)
=-++.++.|+++.+.|.+ .-+++|+.+...++.+..-.+-..+-..|.-.......+. ......
T Consensus 95 ~sl~~~l~g~~~~~~G~~~~r~~~fPl~~Llf~vP~p~~l~~pLq~~ta~~~~~~L~~~Gipv~~eG~~I~l~~g~~~Va 174 (267)
T TIGR03109 95 LSLVALLVFSVIALLGPRVARALAFPLAFLLFAVPVGDFLIPPLQDITAFFTVALLSATGIPVYREGVFIHIPSGTFEVA 174 (267)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHcCCCEEEeeeEEEECCEEEEEe
Confidence 345666677777666542 1578899999999999988888888888987766321111 112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHH
Q 010956 416 AFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPF 460 (497)
Q Consensus 416 l~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~ 460 (497)
-.+..+|.++.=+....+...+-......+++++.++.|.++..-
T Consensus 175 ~aCSGlr~l~~~~~l~~l~~~l~~~~~~~r~~l~~~ai~iai~aN 219 (267)
T TIGR03109 175 EACSGLRYLIASLAIGALYAYLNFRSIKRRLLFFLVSIIVPILAN 219 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 446678877654444333333445566678899999999987653
No 63
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=50.05 E-value=3.9e+02 Score=29.50 Aligned_cols=37 Identities=24% Similarity=0.520 Sum_probs=30.3
Q ss_pred hccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHH
Q 010956 451 AALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLV 490 (497)
Q Consensus 451 AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv 490 (497)
+-+|+--.+...|..+|.| ....++++.++++|.+++
T Consensus 152 ~lvPPtPgpla~a~~lg~d---lG~~il~Gl~vaip~~~i 188 (441)
T PF02447_consen 152 ALVPPTPGPLAAAGALGAD---LGLVILYGLIVAIPAMLI 188 (441)
T ss_pred hccCCCCcHHHHHHHhCCC---hhHHHHHhHHHHHHHHHH
Confidence 4578888888899999987 446788999999997755
No 64
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=49.98 E-value=37 Score=33.73 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010956 357 SLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASI 435 (497)
Q Consensus 357 iILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~ 435 (497)
+++|.++.+++---=+++|++....=..--..+.++.++.+|..+....... .....+++++++=++..|+.+.++..
T Consensus 13 LliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~~~~~~-~~slklLLiIvFllLTaPVaSHaIAR 90 (197)
T PRK12585 13 ILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYFFHSGE-GFNARVLLAVLFIFLTTPVASHLINR 90 (197)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544211024788877665333334455666667775543211000 11223444455557788887777664
No 65
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=49.01 E-value=1.3e+02 Score=33.11 Aligned_cols=39 Identities=10% Similarity=0.271 Sum_probs=27.9
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhc-CCCCCcHHHHHHHH
Q 010956 345 WRKLIRNPNTYSSLIGLVWSLVSFR-WNVQMPAIVAKSIS 383 (497)
Q Consensus 345 lkkLLrNP~IiAiILGLIlsLl~fr-~gI~LP~~I~~sL~ 383 (497)
||+++++|++||+.++-.....++- .-..+|.++.+.++
T Consensus 251 ~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~ 290 (466)
T KOG2532|consen 251 YKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLG 290 (466)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC
Confidence 9999999999999998776654332 12357777776554
No 66
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=48.73 E-value=2.7e+02 Score=27.24 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccc
Q 010956 355 YSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQ 404 (497)
Q Consensus 355 iAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~ 404 (497)
.+.++|+++..+. ..+ .+..+.+.....-+-||.+|+.+...
T Consensus 3 ~~li~Gi~lG~~~-----~~~---~~~~~~~~~~~L~lLLF~VGi~lG~~ 44 (191)
T PF03956_consen 3 IALILGILLGYFL-----RPP---FSLIDKISTYALYLLLFLVGIDLGSN 44 (191)
T ss_pred eeHHHHHHHHHHh-----ccc---ccccccHHHHHHHHHHHHHHHHhcCC
Confidence 4567777777661 122 22226677788999999999999875
No 67
>PRK10472 low affinity gluconate transporter; Provisional
Probab=47.73 E-value=4.3e+02 Score=29.29 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=31.9
Q ss_pred hccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHH
Q 010956 451 AALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLV 490 (497)
Q Consensus 451 AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv 490 (497)
+-+|+--.+...|..+|.| ...+++++.++++|.+++
T Consensus 156 ~~vPP~Pgp~a~a~~l~ad---lG~~il~Glivaip~~~i 192 (445)
T PRK10472 156 AFLLPGPAPMLLASQMNAD---FGWMILIGLCAAIPGMII 192 (445)
T ss_pred cccCCCcHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHH
Confidence 3489999999999999998 678899999999998655
No 68
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=45.61 E-value=2.1e+02 Score=30.75 Aligned_cols=93 Identities=12% Similarity=0.005 Sum_probs=52.5
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHH----HhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHH
Q 010956 350 RNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILS----DAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLT 425 (497)
Q Consensus 350 rNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG----~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV 425 (497)
.++.+|.++++.++..+ ++ +|+-+.+-.+..+ ...++..|..+|+....-......-....+..++.=.+.
T Consensus 204 Ih~~v~mII~~vi~k~~----gl-lp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg 278 (347)
T TIGR00783 204 IPAYAFMILIAAALKAF----GL-VPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVA 278 (347)
T ss_pred CCHHHHHHHHHHHHHHh----CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHH
Confidence 37899999999999999 55 6777666666666 444455555566653321111111112223333333333
Q ss_pred HHHHHHHHHHHhCCchHHHHHH
Q 010956 426 GPAVMAAASIAVGLRGVLLHVA 447 (497)
Q Consensus 426 ~PLLal~l~~lLgLd~~ll~Va 447 (497)
.-+..+++.+++|+-+.+..+.
T Consensus 279 ~ii~s~lvGKllG~YPiE~aIt 300 (347)
T TIGR00783 279 MILGGAFLGKLMGMYPVESAIT 300 (347)
T ss_pred HHHHHHHHHHHhCCChHHHHHH
Confidence 3444456667788777654433
No 69
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=42.71 E-value=66 Score=34.02 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 010956 355 YSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAAS 434 (497)
Q Consensus 355 iAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~ 434 (497)
+++++|.++.-+ .-.+++.....+.. .+|..-+.+|..+..+. ....+..-++..+.+-+ +.+.+.+.+.
T Consensus 178 lplliG~~lgnl----~~~l~~~~~~Gi~~----lLp~~~~~lG~~l~lq~-i~~~G~~GilL~~~~~~-~t~~~~~~~~ 247 (326)
T PRK05274 178 LPLLVGFILGNL----DPELRQFLGKAVPV----LIPFFAFALGNGIDLGT-IITAGLSGILLGVAVVA-VTGIPLYLAD 247 (326)
T ss_pred HHHHHHHHHHhH----HHhhHHHhcCCcEE----EHHHHHHHHhcceeHhH-HHhcCCcchhhhhhHhh-ccchhhHhHh
Confidence 666666666543 22233333333333 77888888999998853 33444555555444433 3344455555
Q ss_pred HHhCCchHHHHHHHH
Q 010956 435 IAVGLRGVLLHVAIV 449 (497)
Q Consensus 435 ~lLgLd~~ll~VaIL 449 (497)
.+++.++...+..++
T Consensus 248 Rl~~~~~g~~g~a~~ 262 (326)
T PRK05274 248 RLIGGGNGVAGAAAG 262 (326)
T ss_pred heeecCCCcchHHHH
Confidence 777554443333333
No 70
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=42.15 E-value=4.2e+02 Score=27.57 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010956 476 GVIFGMLIALPITLVYYILL 495 (497)
Q Consensus 476 ~V~~STLLSLPi~lv~~iLL 495 (497)
....-++.++|++++.++++
T Consensus 158 ~~~~l~l~alpl~~vlFl~f 177 (325)
T PF11992_consen 158 RALKLLLQALPLALVLFLLF 177 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334456788888777764
No 71
>TIGR03113 exosortase_2 exosortase 2. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this relatively uncommon proteobacterial type to be type 2. We propose the gene symbol xrtB. Most species encountered so far with xrtB also contain xrtA (TIGR03109).
Probab=40.69 E-value=58 Score=33.54 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHhhhcC-------------CCCCcHHHHHH----HHHHHHhHHHHHHHHHhHhcccchhhh---hcch
Q 010956 353 NTYSSLIGLVWSLVSFRW-------------NVQMPAIVAKS----ISILSDAGLGMAMFSLGLFMALQPRII---ACGN 412 (497)
Q Consensus 353 ~IiAiILGLIlsLl~fr~-------------gI~LP~~I~~s----L~iLG~AatPLALf~LGlsLa~~~k~i---~~~~ 412 (497)
-++.++.|+++.+.|.+. -+++|.++.+. ++.+....+-..+-..|+-..+....+ ....
T Consensus 90 slv~~l~g~~l~~~G~~~~r~~~fPL~~Llf~vP~p~~l~~~lt~pLq~~~s~~a~~~L~~~Gipv~reG~~i~lp~~~l 169 (268)
T TIGR03113 90 SQIPVIAGLLLITRGWRALRALWFPLFFLLFMIPLPGFVVDALTLPMKQAVSYVAEQILYWAGYPIARSGVILQVGQYQL 169 (268)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCcHHHHhhhHHHHHHHHHHHHHHHHHHcCCCEEEeeeEEEECCeeE
Confidence 456777888887776531 46788776665 565555555566777787766532111 1112
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHhCCchHHHHHHHHhhccchhhHHH
Q 010956 413 SIAAFSMAVRFLTGPAVMAAA-SIAVGLRGVLLHVAIVQAALPQGIVPF 460 (497)
Q Consensus 413 k~il~~~lvRLLV~PLLal~l-~~lLgLd~~ll~VaIL~AAmP~Ai~s~ 460 (497)
..+=.+..+|.++.=+....+ ..++......++++++.++.|.++.+-
T Consensus 170 ~Va~aCSGlr~L~~l~~l~~l~~~l~~~~~~~r~~~l~~~avpiai~aN 218 (268)
T TIGR03113 170 LVADACAGLHTLFSLEAMGLLYLNLVRHDSIARNVILAIAIIPISFTAN 218 (268)
T ss_pred EEeccCCcHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 233446678886643333222 334555566788888899999986653
No 72
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=38.98 E-value=3.8e+02 Score=28.87 Aligned_cols=96 Identities=15% Similarity=0.031 Sum_probs=65.6
Q ss_pred HHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHH
Q 010956 381 SISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPF 460 (497)
Q Consensus 381 sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~ 460 (497)
..+-+|...+-+-+-++|...+.. .+.. -...+...++=+.++=++++++..++++|-....++-....-= +..+.
T Consensus 264 g~~~lg~~lly~ffa~IGa~a~i~--~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~AnIGG-paTA~ 339 (378)
T PF05684_consen 264 GASELGTFLLYLFFAVIGASADIS--ELLD-APSLFLFGFIILAIHLLLMLILGKLFKIDLFELLVASNANIGG-PATAP 339 (378)
T ss_pred chHHHHHHHHHHHHHHHccccCHH--HHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhhcccCC-cchHH
Confidence 446666666666666788866542 2222 3444555667788888888999999999876665555444332 34467
Q ss_pred HHHHHhCCChhhHHHHHHHHHH
Q 010956 461 VFAKEYNVHPDILSTGVIFGML 482 (497)
Q Consensus 461 VfA~eYg~d~elASs~V~~STL 482 (497)
++|.-|| ++++.-.|+++++
T Consensus 340 a~A~a~~--~~Lv~pgvL~gvl 359 (378)
T PF05684_consen 340 AVAAAKG--PSLVPPGVLMGVL 359 (378)
T ss_pred HHHHhcC--CccHHHHHHHHHH
Confidence 7899898 7888888888776
No 73
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=38.58 E-value=4.6e+02 Score=27.05 Aligned_cols=99 Identities=13% Similarity=0.011 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHH
Q 010956 352 PNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMA 431 (497)
Q Consensus 352 P~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal 431 (497)
|++.-+++|.++.-. ++=-++.....-++.-+.+.|+.+|.-=..-.. .... ..+..+....++=.++.-++.+
T Consensus 8 ~i~~ii~~G~~~~~~----~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 81 (385)
T PF03547_consen 8 PIFLIILLGYLLGRF----GILDPEASKGLSKLVFNVFLPALIFSSIANTDT-LEDL-LSLWFIPVFAFIIFILGLLLGF 81 (385)
T ss_pred HHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 677778888777654 555566677777777889999988874333111 1111 1223333333333444445555
Q ss_pred HHHHHhCCchHHHHHHHHhhccchh
Q 010956 432 AASIAVGLRGVLLHVAIVQAALPQG 456 (497)
Q Consensus 432 ~l~~lLgLd~~ll~VaIL~AAmP~A 456 (497)
++..+++.+.....+.++.++.+-.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~N~ 106 (385)
T PF03547_consen 82 LLSRLFRLPKEWRGVFVLAASFGNT 106 (385)
T ss_pred HHHHhcCCCcccceEEEecccCCcc
Confidence 5566677787777777766655433
No 74
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=37.21 E-value=5.7e+02 Score=27.72 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=34.8
Q ss_pred HhhccchhhHHH-------HHHHHhCCChhhHHHHHHHHHHHHHHHH-HHHHHHhc
Q 010956 449 VQAALPQGIVPF-------VFAKEYNVHPDILSTGVIFGMLIALPIT-LVYYILLG 496 (497)
Q Consensus 449 L~AAmP~Ai~s~-------VfA~eYg~d~elASs~V~~STLLSLPi~-lv~~iLLg 496 (497)
+..++|.-+.++ .+++.|+.|++.+..++.+++++.+.+. +|.+.++|
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg 238 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLG 238 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677766554 4578889999999999999999876544 44444443
No 75
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=36.74 E-value=6.4e+02 Score=28.59 Aligned_cols=125 Identities=19% Similarity=0.169 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHhhhc-CCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHH
Q 010956 353 NTYSSLIGLVWSLVSFR-WNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMA 431 (497)
Q Consensus 353 ~IiAiILGLIlsLl~fr-~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal 431 (497)
.++.+++|+++..+... .+++.+. +.. ++.-...+|..+|--|..+.. +..+..++.++....+=.++.-+++.
T Consensus 38 s~llil~GlllG~i~~~~~~~~~~~-l~~--~lf~~~~LPpIlFe~g~~l~~--~~f~~n~~~Il~lAv~Gvlit~~~ig 112 (559)
T TIGR00840 38 SVLLIVYGLLVGGIIKASPHIDPPT-LDS--SYFFLYLLPPIVLDAGYFMPQ--RNFFENLGSILIFAVVGTLINAFVIG 112 (559)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCC-cCH--HHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677776643110 0111111 111 344446889999999999986 33344445444433333333333332
Q ss_pred HHHH----Hh-------CCchHHHHHHHHhhccchhhHHHHHHHHhCCChh------------hHHHHHHHHHHHH
Q 010956 432 AASI----AV-------GLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPD------------ILSTGVIFGMLIA 484 (497)
Q Consensus 432 ~l~~----lL-------gLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~e------------lASs~V~~STLLS 484 (497)
.+.+ .. ++...+...+++.+.=|+++.+. -++++.+++ .+.+++++.++++
T Consensus 113 ~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai--~~~~~v~~~L~~ll~gESllNDavaIVLf~~~~~ 186 (559)
T TIGR00840 113 LSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAV--FEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIK 186 (559)
T ss_pred HHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHH--HHhcCCCcchhhheehhhhhhccHHHHHHHHHHH
Confidence 2222 11 12234455556666667777754 467777653 3455666665544
No 76
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=36.00 E-value=5.8e+02 Score=28.89 Aligned_cols=28 Identities=18% Similarity=0.466 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhchhH------HHHHHHHHHHHh
Q 010956 339 LILIMVWRKLIRNPNT------YSSLIGLVWSLV 366 (497)
Q Consensus 339 ~ilk~vlkkLLrNP~I------iAiILGLIlsLl 366 (497)
..+++.++..+|||.. .++++|+++..+
T Consensus 345 ~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~ 378 (617)
T TIGR00955 345 ALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLI 378 (617)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777788843 345555555554
No 77
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=35.66 E-value=5.7e+02 Score=29.14 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHH
Q 010956 415 AAFSMAVRFLTGPAVMAAASIAVG-----LRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGML 482 (497)
Q Consensus 415 il~~~lvRLLV~PLLal~l~~lLg-----Ld~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STL 482 (497)
+.....+|.-+.=++.+.+++..| |.+.+.+++.+-+..=.+.-...+++.+|...+.++..+.+..+
T Consensus 273 a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g~~se~~~~~~lf~~i 345 (518)
T KOG2568|consen 273 ASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLARVIGNISELSSLLILFAAL 345 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHHHHhcCcccccchhhHHHHH
Confidence 344556677776666666666554 56778888888877777888888899999988888776665554
No 78
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=34.63 E-value=2.9e+02 Score=29.39 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHH
Q 010956 373 QMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFS 418 (497)
Q Consensus 373 ~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~ 418 (497)
.+|+.+.+.++.+++...-++|..+|+..... +..+.+.|..+..
T Consensus 269 ~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~-~l~~~G~kp~~~g 313 (335)
T TIGR00698 269 LLPGEVVQALVPLDTFLLATAMAALGLTTNVS-AVKKAGVKPLFAS 313 (335)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHH-HHHHcCchHHHHH
Confidence 47888999999999999999999999999874 2333445555443
No 79
>COG2855 Predicted membrane protein [Function unknown]
Probab=32.96 E-value=2.9e+02 Score=29.63 Aligned_cols=44 Identities=30% Similarity=0.321 Sum_probs=34.2
Q ss_pred CCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHH
Q 010956 372 VQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAA 416 (497)
Q Consensus 372 I~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il 416 (497)
..+|+.+.+.+..++....-++|..+|+..... +..+.+.|..+
T Consensus 270 ~~iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~-~l~~~G~kpl~ 313 (334)
T COG2855 270 GLIPAEVVSALVTLSTFLLAMAMAALGLTTHIK-ALKKAGGKPLL 313 (334)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhccccCHH-HHHHcCccHHH
Confidence 348999999999999999999999999999873 33334444433
No 80
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=32.86 E-value=7.1e+02 Score=27.48 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=63.2
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhc-
Q 010956 374 MPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAA- 452 (497)
Q Consensus 374 LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AA- 452 (497)
+|..+.-.++++.....+...|.++..++..- +......+ .++|+++ .+...+|.++.....+++..|
T Consensus 89 i~~l~~~g~~~i~p~~~~~~~Fl~~~~~s~~~-----Gss~gt~~-----~~g~~l~-~i~~~~g~~~~~~agai~sGa~ 157 (454)
T TIGR00931 89 VPTLIYYGLSIISPEWFAVSTLLICMIVSSFT-----GTSWGTVG-----TIGVAMM-GIGTGLGIDLAIAAGAVVCGAY 157 (454)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHh-----ccHHHHHH-----HHHHHHH-HHHHHcCCCHHHHHHHHHHHHH
Confidence 55555555555555555555566555555411 00000000 1122221 133456777766666666543
Q ss_pred -----cchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 010956 453 -----LPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLG 496 (497)
Q Consensus 453 -----mP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~~iLLg 496 (497)
.|..-.+.+-|..-|.|.-.--...+.+++.+..+.++.|+++|
T Consensus 158 fGD~~sP~Sdtt~l~a~~~~~~~~~~v~~~~~~~~~a~~i~~v~~~i~g 206 (454)
T TIGR00931 158 FGDKLSPLSDTTNFASGIVGVDLFDHIRHLLYTTVPSFVITAILFLVIG 206 (454)
T ss_pred HcCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47777777777777777666666777777777777777777766
No 81
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.33 E-value=1.6e+02 Score=34.68 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=33.1
Q ss_pred CCCcchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhc-CCCCCcHHHHH
Q 010956 330 MPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFR-WNVQMPAIVAK 380 (497)
Q Consensus 330 mp~~~v~tr~ilk~vlkkLLrNP~IiAiILGLIlsLl~fr-~gI~LP~~I~~ 380 (497)
+.+.-...-..+-+.+|++++||+.+..+++-++-+..+. .-.=+|++|++
T Consensus 370 ~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~ 421 (735)
T KOG3626|consen 370 SDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLET 421 (735)
T ss_pred CCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHH
Confidence 3344444556677889999999999998888777655331 01225666653
No 82
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=31.84 E-value=4.7e+02 Score=25.09 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhh-cchhHHHHHHHHHHHHHHHHHHHH
Q 010956 356 SSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIA-CGNSIAAFSMAVRFLTGPAVMAAA 433 (497)
Q Consensus 356 AiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~-~~~k~il~~~lvRLLV~PLLal~l 433 (497)
..+.|+++..++-+..+.+|..+... +.+...-+=+.++|+.-..+. ...+ ..++.... .++=.++..++.+.+
T Consensus 29 ~L~vgL~~G~~~~~~~~~~~~~~~~~---l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~-~~~i~~~~~~~~~~~ 104 (169)
T PF06826_consen 29 VLFVGLILGALGRTGPIFLPISAPSF---LRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLL-GVIITLVPLLIALVI 104 (169)
T ss_pred HHHHHHHHHHhhhccCCCCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHH
Confidence 45566666665322222355544444 444445555666777654432 1112 22333333 333334455555666
Q ss_pred HH-HhCCchHHHHHHH
Q 010956 434 SI-AVGLRGVLLHVAI 448 (497)
Q Consensus 434 ~~-lLgLd~~ll~VaI 448 (497)
.+ +++++.....-++
T Consensus 105 ~~~~~~l~~~~~~G~~ 120 (169)
T PF06826_consen 105 GRYLFKLNPGIAAGIL 120 (169)
T ss_pred HHHHcCCCHHHHHHHH
Confidence 66 8899865544443
No 83
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=31.10 E-value=5.8e+02 Score=27.53 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=30.6
Q ss_pred HHHHHHhhccchhhHHHH-------HHHHhCCChhh-HHHHHHHHHHHHHHHHHH
Q 010956 444 LHVAIVQAALPQGIVPFV-------FAKEYNVHPDI-LSTGVIFGMLIALPITLV 490 (497)
Q Consensus 444 l~VaIL~AAmP~Ai~s~V-------fA~eYg~d~el-ASs~V~~STLLSLPi~lv 490 (497)
....-+..+.|..+.++. +.++|+.+.+. .-.++..++++++.+.+.
T Consensus 190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~ 244 (415)
T COG0814 190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYIL 244 (415)
T ss_pred hhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 444566678888887765 46778877766 556666666666554433
No 84
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=30.57 E-value=8.4e+02 Score=27.71 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHHHHhCCchHHHHHHH---------HhhccchhhHHHHHHHHhCCChhh
Q 010956 430 MAAASIAVGLRGVLLHVAI---------VQAALPQGIVPFVFAKEYNVHPDI 472 (497)
Q Consensus 430 al~l~~lLgLd~~ll~VaI---------L~AAmP~Ai~s~VfA~eYg~d~el 472 (497)
......++|.+++..+++. +.--||--.....++++|+.|...
T Consensus 423 fVPMlMllGysPe~tQaayRigDS~tniiTPlm~yfpLil~~~~kY~k~~Gv 474 (516)
T COG2978 423 FVPMLMLLGYSPEFTQAAYRIGDSVTNIITPLMPYFPLILAYAQKYDKDAGV 474 (516)
T ss_pred HHHHHHHhcCCHHHHHHHHHhcccccccccchhhhHHHHHHHHHHhCcCccH
Confidence 3344556788888777663 333445556667789999888654
No 85
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=30.40 E-value=7.3e+02 Score=26.90 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=72.0
Q ss_pred HHHHhhchh---HHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhhcchhHHHHHHH
Q 010956 345 WRKLIRNPN---TYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIACGNSIAAFSMA 420 (497)
Q Consensus 345 lkkLLrNP~---IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~~~~k~il~~~l 420 (497)
+-+.+|.|. .-++++|.+++..+ ..++++|+++....+.+-. -.+|..++... +..++.....+...+
T Consensus 203 l~~~lr~Pa~~ll~~l~l~a~v~~~~-~~~~~lP~wl~~va~~~iG-------~~IG~~f~~~~l~~~~r~~~~~~v~ii 274 (352)
T COG3180 203 LGKLLRFPAPTLLGPLLLGAIVHFGG-GITIQLPAWLLAVAQALIG-------ALIGSRFDRSILREAKRLLPAILVSII 274 (352)
T ss_pred HHHHHcCCcHHHHHHHHHHHHhhccc-ceeeeCCHHHHHHHHHHHH-------HHHcccccHHHHHHhHhhcchHHHHHH
Confidence 445577774 45566777777653 3467899887755444332 34566666532 222233344455555
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHH-HHHHHhCCChhhHHHH
Q 010956 421 VRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPF-VFAKEYNVHPDILSTG 476 (497)
Q Consensus 421 vRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~-VfA~eYg~d~elASs~ 476 (497)
.=+++.-.+++++.+..++|.. ..+.+..|-|+... ..|..-+.|+.+..+.
T Consensus 275 ~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma~~A~~l~ad~a~V~a~ 327 (352)
T COG3180 275 ALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMAAIAAALGADPAFVMAL 327 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHHHHHHHcCCChHHHHHH
Confidence 5555666666666777777754 45567889886654 4466777787666544
No 86
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=29.65 E-value=38 Score=34.89 Aligned_cols=127 Identities=12% Similarity=0.108 Sum_probs=8.8
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHH-HhHHHHHHHHHhHhcccchhh-hhcchhHHHHHHHHHHHHHH
Q 010956 350 RNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILS-DAGLGMAMFSLGLFMALQPRI-IACGNSIAAFSMAVRFLTGP 427 (497)
Q Consensus 350 rNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG-~AatPLALf~LGlsLa~~~k~-i~~~~k~il~~~lvRLLV~P 427 (497)
.++.+-+.++|+++.-. +..+-+.+-++.+. ....|+-.+.+|+.+....-. ....+.......+.+++.-+
T Consensus 234 ~s~~l~af~~Gl~~~~~------~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~ 307 (380)
T PF00999_consen 234 LSGILGAFIAGLILSNS------PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKF 307 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeeeeehccccc------cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhh
Confidence 46777888899998833 22222444566666 888999999999999852100 02233444444555555666
Q ss_pred HHHHHHHHHhCCchHHHHHHHHhhcc-chhhHHHHHH---HHhCCChhhHHHHHHHHHHHH
Q 010956 428 AVMAAASIAVGLRGVLLHVAIVQAAL-PQGIVPFVFA---KEYNVHPDILSTGVIFGMLIA 484 (497)
Q Consensus 428 LLal~l~~lLgLd~~ll~VaIL~AAm-P~Ai~s~VfA---~eYg~d~elASs~V~~STLLS 484 (497)
+..+......+.+. .....+-.++ |.+....+++ .++|.-.+....+++...+++
T Consensus 308 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t 366 (380)
T PF00999_consen 308 IGVYLASRLFGIPW--KEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLT 366 (380)
T ss_dssp -----------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------
T ss_pred ceeehhhhhccccc--chhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeH
Confidence 66666665555443 3333333444 4665555554 344433332344444444444
No 87
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=29.27 E-value=7.7e+02 Score=27.97 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=29.0
Q ss_pred HHHHHHHhCCchHHHHHHH---------HhhccchhhHHHHHHHHhCCChhh
Q 010956 430 MAAASIAVGLRGVLLHVAI---------VQAALPQGIVPFVFAKEYNVHPDI 472 (497)
Q Consensus 430 al~l~~lLgLd~~ll~VaI---------L~AAmP~Ai~s~VfA~eYg~d~el 472 (497)
......++|+++...+++. +.--+|--.....++++|+.+...
T Consensus 411 fVPM~m~lg~sP~~tQ~aYRigDS~TN~ItPl~~yf~lil~~~qkY~k~~gi 462 (502)
T PF03806_consen 411 FVPMFMLLGYSPALTQAAYRIGDSSTNIITPLMPYFPLILGFAQKYDKKAGI 462 (502)
T ss_pred HHHHHHHcCCCHHHHHHHHHhccccccccCccHHHHHHHHHHHHHhCcCccH
Confidence 3444456788888877764 334455556777889999877543
No 88
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=28.61 E-value=7.5e+02 Score=26.45 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=35.1
Q ss_pred CCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHH
Q 010956 438 GLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPI 487 (497)
Q Consensus 438 gLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi 487 (497)
+....+..|+|=.+-+|++.+.-+.......+.-..|...++..+++|-+
T Consensus 229 ~~s~aLvGVaIAvaLvPPa~~~Gi~la~g~~~~a~ga~~L~~~Nl~~I~l 278 (325)
T TIGR00341 229 GILESLAGVAISASLLPPAVATGILLVISPLPLAVKSLILTLINVAGLMA 278 (325)
T ss_pred ccccchHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888899998887766655555555666666666766543
No 89
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=28.33 E-value=9.1e+02 Score=27.35 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhc--CCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhhc-chhHHHHHHHHHHHHHH-HHH
Q 010956 356 SSLIGLVWSLVSFR--WNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIAC-GNSIAAFSMAVRFLTGP-AVM 430 (497)
Q Consensus 356 AiILGLIlsLl~fr--~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~~-~~k~il~~~lvRLLV~P-LLa 430 (497)
+.+.|+++..++-+ .-+.+|......+ .+...-+=+.++|+.-..+. ...+. +++..+.. +=..+.| +++
T Consensus 421 ~l~~gl~~g~~~~~~~~~~~~p~~a~~~l---~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g--~~~~~~~~~~~ 495 (562)
T TIGR03802 421 ALISGLVFGWLRSKHPTFGNIPSSASWLL---KDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG--IVVTILPLIIT 495 (562)
T ss_pred HHHHHHHHHHhcccCCcceecCHHHHHHH---HHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH--HHHHHHHHHHH
Confidence 44556666655321 1224676544444 44445555566676554322 11111 23333332 2233344 444
Q ss_pred HHHH-HHhCCchHHHHHHH
Q 010956 431 AAAS-IAVGLRGVLLHVAI 448 (497)
Q Consensus 431 l~l~-~lLgLd~~ll~VaI 448 (497)
+.+. ++++++.....-++
T Consensus 496 ~~~~~~~~~~~~~~~~G~~ 514 (562)
T TIGR03802 496 MLIGKYVLKYDPALLLGAL 514 (562)
T ss_pred HHHHHHHhCCCHHHHHHHh
Confidence 5555 57899876554443
No 90
>PRK04972 putative transporter; Provisional
Probab=27.76 E-value=9.3e+02 Score=27.28 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=13.7
Q ss_pred eEEEEECCCcccc-CCCCc
Q 010956 65 IVSIHVDSDIMSL-DGRQP 82 (497)
Q Consensus 65 i~s~~vd~dv~sl-~g~~~ 82 (497)
...++|+.+.+++ +|+.-
T Consensus 215 ~r~~~V~~~~~~~~~Gktl 233 (558)
T PRK04972 215 IRAYRVGPELVAWTDGKNL 233 (558)
T ss_pred eeEEEECCccccCcCCCCH
Confidence 7889999987665 68763
No 91
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=27.69 E-value=8e+02 Score=27.18 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHH----HhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHH
Q 010956 351 NPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILS----DAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTG 426 (497)
Q Consensus 351 NP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG----~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~ 426 (497)
.+..|-+++..++..+ ++ +|+.+++..+.+. ...++..|+.+|+.+-.-.+....-...-+..++.-.+..
T Consensus 272 h~~a~mIi~~~i~K~~----~l-vP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~ 346 (414)
T PF03390_consen 272 HAYAWMIILVAIVKAF----GL-VPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGA 346 (414)
T ss_pred cHHHHHHHHHHHHHHh----Cc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhCCchHHHHHH
Q 010956 427 PAVMAAASIAVGLRGVLLHVA 447 (497)
Q Consensus 427 PLLal~l~~lLgLd~~ll~Va 447 (497)
-+..+.+.+++|+-+.+..+.
T Consensus 347 ~~~a~~vG~l~g~YPvEsAIt 367 (414)
T PF03390_consen 347 VIGAFLVGKLVGFYPVESAIT 367 (414)
T ss_pred HHHHHHHHHHhCCChHHHHHH
No 92
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=27.41 E-value=3.5e+02 Score=26.26 Aligned_cols=101 Identities=19% Similarity=0.294 Sum_probs=45.8
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-h-----hhhcch----hHHHHHH
Q 010956 350 RNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-R-----IIACGN----SIAAFSM 419 (497)
Q Consensus 350 rNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k-----~i~~~~----k~il~~~ 419 (497)
|-=..++++.|+++.++++-.+ |..+...++.+=|--.|.+.+.+...+.... + ..+... .-.+.+.
T Consensus 41 r~G~~~G~~~G~l~Gll~~~~g---~~~~~~p~q~llDY~laf~~lGlaGlf~~~~~~~~~~~~~~~~~~~i~~g~~i~~ 117 (177)
T PF09515_consen 41 RRGWKAGILAGFLYGLLQFLLG---PAYIVHPVQVLLDYPLAFGALGLAGLFAKPLQKTLKNNRYKKSYLNIILGTFIAV 117 (177)
T ss_dssp HH-HHHHHHHHHHHHHHHHHTT----S--SSHHHHHHHHTHHHHHGGGGGGG-----------SSS--HHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHhC---CceehhHHHHHHHHHHHHHHHHHHHhcccccchhhhhcccchhHHHHHHHHHHHH
Confidence 4445678888888887743222 2244455555555555555555544444411 0 000111 1223344
Q ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHHhCC
Q 010956 420 AVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNV 468 (497)
Q Consensus 420 lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~ 468 (497)
+.|++..-+- .+.+-..-.|.+.++.+++--||.
T Consensus 118 ~~r~~~h~is---------------Gvif~~~yAp~g~~~~~YS~~yN~ 151 (177)
T PF09515_consen 118 FLRYFCHFIS---------------GVIFFGSYAPEGMNPWLYSFIYNG 151 (177)
T ss_dssp HHHHHHHHHH---------------HHHH-GGG--TT--HHHHHHHHHH
T ss_pred HHHHHHHHHH---------------HHHHHHHhCcCcccHHHHHHHHHH
Confidence 5555544332 233333457888899999988875
No 93
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=25.90 E-value=9.4e+02 Score=26.67 Aligned_cols=135 Identities=13% Similarity=0.215 Sum_probs=77.0
Q ss_pred hchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHH-HHHHhHhcccch-----------hhh-hcchhH-H
Q 010956 350 RNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMA-MFSLGLFMALQP-----------RII-ACGNSI-A 415 (497)
Q Consensus 350 rNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLA-Lf~LGlsLa~~~-----------k~i-~~~~k~-i 415 (497)
.||.+-.++.++++.++. +.++.+.+....+-.|+...-++ +|.+|..+...- ..+ +.+.|+ .
T Consensus 22 l~pf~alli~a~~~gl~~---Gm~~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G~kr~~ 98 (438)
T PRK14984 22 MNGFIALVLVALAVGLMQ---GMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQ 98 (438)
T ss_pred HhHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhCccchH
Confidence 488888888888888777 78777777666665555444433 455566554210 000 111222 2
Q ss_pred HHHHHHHHHH-HHHHH-HHH----------HHHhCCchHH------HHHHHHhhccchhhHHHHHHHHhCCChhhHHHHH
Q 010956 416 AFSMAVRFLT-GPAVM-AAA----------SIAVGLRGVL------LHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGV 477 (497)
Q Consensus 416 l~~~lvRLLV-~PLLa-l~l----------~~lLgLd~~l------l~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V 477 (497)
+...+.-+++ .|+.. .++ ..-.+.+... ....+..+.+|+.-.+...|..+|.| ...++
T Consensus 99 ~a~~l~~~il~ipvF~dv~fvil~Pi~~~lak~~~~~~~~~~~~l~~gl~~th~~vPP~Pgpla~a~~lgad---lG~~i 175 (438)
T PRK14984 99 WAVVLTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGPTAIATIFNAD---MGKTL 175 (438)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCC---HHHHH
Confidence 2222222222 23222 111 1112333222 22233444679999999999999988 67889
Q ss_pred HHHHHHHHHHHHH
Q 010956 478 IFGMLIALPITLV 490 (497)
Q Consensus 478 ~~STLLSLPi~lv 490 (497)
+++.++++|..++
T Consensus 176 l~Glivaip~~~i 188 (438)
T PRK14984 176 LYGTILAIPTVIL 188 (438)
T ss_pred HHhHHHHHHHHHH
Confidence 9999999998543
No 94
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.99 E-value=94 Score=29.33 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHhcc
Q 010956 377 IVAKSISILSDAGLGMAMFSLGLFMA 402 (497)
Q Consensus 377 ~I~~sL~iLG~AatPLALf~LGlsLa 402 (497)
.+..++-.++..++++.||+.|+...
T Consensus 35 ~~~s~~lg~~~lAlg~vL~~~g~~~~ 60 (191)
T PF04156_consen 35 ALISFILGIALLALGVVLLSLGLLCL 60 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666677777777543
No 95
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=24.76 E-value=9.8e+02 Score=26.50 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=32.2
Q ss_pred HHhCCchHHHHHHHHhhc-----c-chhhHHHHHHHHhCCChhhHHHHHHHHHHHH
Q 010956 435 IAVGLRGVLLHVAIVQAA-----L-PQGIVPFVFAKEYNVHPDILSTGVIFGMLIA 484 (497)
Q Consensus 435 ~lLgLd~~ll~VaIL~AA-----m-P~Ai~s~VfA~eYg~d~elASs~V~~STLLS 484 (497)
..+|.|+......+.+++ + |.+.+.++-|.--|.++.....-..+-++++
T Consensus 384 ~~lG~~pv~~~~~~~~~~~~G~~~sPvs~~ii~~ag~a~~~~~~ivKrt~ip~ii~ 439 (455)
T PRK10654 384 HSSGINPAYLTIPMLQASNLGRTISPVSGVVVAVAGMAKISPFEVVKRTSVPVLVG 439 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCcCCcchhhHhhhhcccCCCHHHHHHhhhHHHHHH
Confidence 457888877666555543 3 6667777777777778877666644444444
No 96
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=24.59 E-value=1.1e+02 Score=23.38 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=19.6
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHh
Q 010956 342 IMVWRKLIRNPNTYSSLIGLVWSLV 366 (497)
Q Consensus 342 k~vlkkLLrNP~IiAiILGLIlsLl 366 (497)
+...-.++.-|.++|+++|+++.+-
T Consensus 3 kSl~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777999999999999874
No 97
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.44 E-value=2.3e+02 Score=26.90 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010956 356 SSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASI 435 (497)
Q Consensus 356 AiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~ 435 (497)
-+++|.++.+++---=+++|++..+.=..=-..+.++.++.+|..+...... ......+++++++=++..|+....+..
T Consensus 15 ll~lG~~f~ligaIGllRfPD~ytRlHAatKa~TlG~~liLlg~~l~~~~~~-~~~~~k~lLii~fl~lTaPVaah~iaR 93 (145)
T PRK12586 15 MILLGSIIALISAIGIVKFQDVFLRSHAATKSSTLSVLLTLIGVLIYFIVNT-GFFSVRLLLSLVFINLTSPVGMHLIAR 93 (145)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHccccccchhhHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445665555532102478887766533333456677778888777542110 011345666777778888888877764
No 98
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=24.13 E-value=3.6e+02 Score=32.10 Aligned_cols=41 Identities=12% Similarity=0.282 Sum_probs=24.5
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHhhhc-CCCCCcHHHHHH
Q 010956 341 LIMVWRKLIRNPNTYSSLIGLVWSLVSFR-WNVQMPAIVAKS 381 (497)
Q Consensus 341 lk~vlkkLLrNP~IiAiILGLIlsLl~fr-~gI~LP~~I~~s 381 (497)
.+..++.+.+||.++..+++.++..+.+- ...-+|.++.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 255 (1140)
T PRK06814 214 TITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET 255 (1140)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44567888899999888887665433110 012356555544
No 99
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=23.94 E-value=9.1e+02 Score=27.40 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh----CCchHHHHHHHHhhc
Q 010956 377 IVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAV----GLRGVLLHVAIVQAA 452 (497)
Q Consensus 377 ~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~lL----gLd~~ll~VaIL~AA 452 (497)
.+....+.++...-.+..+.+|+.+...... ..+..++.+.++-++.=|+.++.+.++. +..-.+....++.-+
T Consensus 287 ~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~--~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~ 364 (559)
T TIGR00840 287 TIKYFMKMLSSLSETLIFIFLGVSLVTENHE--WNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYA 364 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheeee
Confidence 3556788888888889999999977432111 1122232333333334444444333322 222244555666666
Q ss_pred cchhhHHHHHHHHh
Q 010956 453 LPQGIVPFVFAKEY 466 (497)
Q Consensus 453 mP~Ai~s~VfA~eY 466 (497)
=|-|++++.+|..-
T Consensus 365 GlRGaVa~aLAl~l 378 (559)
T TIGR00840 365 GLRGAVAFALALLL 378 (559)
T ss_pred ccccHHHHHHHHhC
Confidence 67888888777654
No 100
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=23.63 E-value=6.4e+02 Score=26.98 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHH
Q 010956 376 AIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAA 432 (497)
Q Consensus 376 ~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~ 432 (497)
+-+.+.++--....+|.--|.+|..+... ..++.+..-+++.+++=++.+....++
T Consensus 189 ~~~r~fl~~~~~~lIpFf~FaLGaginl~-~i~~aGl~GIlLGl~v~~vtG~~~~~~ 244 (314)
T TIGR00793 189 PELRDFFSKAVQTLIPFFAFALGNTIDLG-VIIQTGLLGILLGVSVIILTGIPLILA 244 (314)
T ss_pred HHHHHHhccCCCeeeehhhhhhcCCCCHH-HHHHhCcchHHHHHHHHHHHhHHHHHH
Confidence 45556666666778899999999999874 344555666666666666666555444
No 101
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=23.32 E-value=6.4e+02 Score=25.11 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCcccccccccccCccccCccCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 010956 269 DYNNNDHKEVRLAVSPQGGKGEGGGGHEEYMEREDFSFGNRRGLESNNNEGEKVGDEKPKAMPPTSVMTRLILIMVWRKL 348 (497)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~mp~~~v~tr~ilk~vlkkL 348 (497)
||.+ ..|.+|. +=+.++|+-+|-+|...+.+..+.|...+..+.-.-...+-+..-+......
T Consensus 12 dF~A--------------GAGV~D~--ELFT~EEq~sFlPk~~~~~~~~~~~~~~~~~~~Il~~nDir~LiglIlFVLA- 74 (189)
T PF05313_consen 12 DFSA--------------GAGVSDE--ELFTEEEQESFLPKDGGGPGGPDFPGIKNLFPNILMNNDIRSLIGLILFVLA- 74 (189)
T ss_pred hccc--------------CCCCChh--hhcCHHHHHccCCCCCCCCCCCCCccccccchHHHhcccHHHHHHHHHHHHh-
Q ss_pred hhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHH------HHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHH
Q 010956 349 IRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISIL------SDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVR 422 (497)
Q Consensus 349 LrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iL------G~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvR 422 (497)
++.|+++|++.=.+-+++ +++|..+..-.-.+ ....+.++++++-+++-..--.....++.+...+.+-
T Consensus 75 l~s~p~ialimi~iAs~l-----lP~PsLVIaYCl~mqi~~~~~~~~~gMsIvcv~~Si~ti~~~~~s~s~~~~ti~yIi 149 (189)
T PF05313_consen 75 LTSTPLIALIMIIIASLL-----LPFPSLVIAYCLSMQIYNPGANNNVGMSIVCVIMSIITIIVNSVSGSSGAYTISYII 149 (189)
T ss_pred ccCccHHHHHHHHHHHHH-----cCccHHHHHHHHHheeecCCCcceehhHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH
Q ss_pred HHHHHHH
Q 010956 423 FLTGPAV 429 (497)
Q Consensus 423 LLV~PLL 429 (497)
+.+.-.+
T Consensus 150 L~iLf~~ 156 (189)
T PF05313_consen 150 LAILFCI 156 (189)
T ss_pred HHHHHHH
No 102
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.18 E-value=4.3e+02 Score=24.23 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010956 356 SSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASI 435 (497)
Q Consensus 356 AiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~ 435 (497)
-+++|.++.+++---=+++|++..+.=..=-..+.++.++.+|..+...... .......+...++=++..|+....+..
T Consensus 13 ll~~G~~~~ligaiGllR~PD~y~RlHAatk~~TlG~~lil~g~~l~~~~~~-~~~~~k~ll~~~f~~lT~Pvaah~iaR 91 (118)
T PRK12587 13 FVIIGALISALAAIGLLRLEDVYSRAHAAGKASTLGAMSLLFGTFLYFIATQ-GYVNMQLIVGIIFVLITGPLSSHMIMK 91 (118)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhHhhHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555421102478888776644444566778888888877542110 011234566666777788887777764
Q ss_pred H
Q 010956 436 A 436 (497)
Q Consensus 436 l 436 (497)
.
T Consensus 92 A 92 (118)
T PRK12587 92 A 92 (118)
T ss_pred H
Confidence 3
No 103
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=23.04 E-value=5.5e+02 Score=30.33 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=15.5
Q ss_pred HHHHHHHHhhchhHHHHHHHHHH
Q 010956 341 LIMVWRKLIRNPNTYSSLIGLVW 363 (497)
Q Consensus 341 lk~vlkkLLrNP~IiAiILGLIl 363 (497)
.+..++.++++|.++..+++.++
T Consensus 221 ~~~~~~~l~~~~~~~~~~~~~~~ 243 (1146)
T PRK08633 221 LWRNLKLLRSDRVLWLAIIGLSY 243 (1146)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH
Confidence 34557778888887776665444
No 104
>PF01219 DAGK_prokar: Prokaryotic diacylglycerol kinase; InterPro: IPR000829 Diacylglycerol kinase (2.7.1.107 from EC) (DAGK) is an enzyme that catalyses the formation of phosphatidic acid from diacylglycerol and ATP, an important step in phospholipid biosynthesis. In bacteria DAGK is very small (13 to 15 kD) membrane protein which seems to contain three transmembrane domains []. The best conserved region, is a stretch of 12 residues which are located in a cytoplasmic loop between the second and third transmembrane domains.; GO: 0004143 diacylglycerol kinase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2KDC_B.
Probab=23.03 E-value=2.9e+02 Score=24.48 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=31.6
Q ss_pred HHHHHHHhCCchHHHHHHHHhhccchh---hHHHH------HHHHhCCC----hhhHHHHHHHHHHHHHHHHHHHH
Q 010956 430 MAAASIAVGLRGVLLHVAIVQAALPQG---IVPFV------FAKEYNVH----PDILSTGVIFGMLIALPITLVYY 492 (497)
Q Consensus 430 al~l~~lLgLd~~ll~VaIL~AAmP~A---i~s~V------fA~eYg~d----~elASs~V~~STLLSLPi~lv~~ 492 (497)
+..+.++++++......+++...+... +|+.+ ...+|+-. .|.+|.+|+++.+.++.+..+++
T Consensus 28 v~~~~~~l~~s~~ew~~li~~~~~Vl~~EllNTAIE~~vD~v~~~~~~~ak~aKD~aAaAVlv~~i~a~~v~~~i~ 103 (104)
T PF01219_consen 28 VLIAAFFLGLSPWEWALLILAIFLVLIAELLNTAIERLVDLVSPEYHPLAKRAKDIAAAAVLVAAIFAVIVGLIIF 103 (104)
T ss_dssp HHHHHHH-----SHHHHHHHHHHHHHHHHTHHHHHHHHHTT----S-TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455567766555555555444433 23322 23444433 47889999999998877666554
No 105
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=22.88 E-value=9.8e+02 Score=25.83 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHHHhH------HHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Q 010956 372 VQMPAIVAKSISILSDAG------LGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLH 445 (497)
Q Consensus 372 I~LP~~I~~sL~iLG~Aa------tPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~ 445 (497)
..+|+.+.+.+..++... +-+.++.+|+.|... ..-+++.|++. .+...+|+|+.+..
T Consensus 295 ~g~~~~i~~~i~~l~~~~~~~l~l~~l~~lilG~~m~~~---------------a~~ii~~pi~~-P~~~~~Gidpi~~g 358 (416)
T PF06808_consen 295 TGVPQAIAEFILSLSGSPWLVLLLIMLILLILGMFMDTT---------------AAIIIVAPILA-PIAQALGIDPIHFG 358 (416)
T ss_pred cCccHHHHHHHHhcCcchHHHHHHHHHHHHHHhccccHH---------------HHHHHHHHHHH-HHHHHhCcchhhHH
Confidence 356777777776665332 223334455555431 12233455443 33356799998888
Q ss_pred HHHHhhc-----c-chhhHHHHHHHHhCCChhhHHHH
Q 010956 446 VAIVQAA-----L-PQGIVPFVFAKEYNVHPDILSTG 476 (497)
Q Consensus 446 VaIL~AA-----m-P~Ai~s~VfA~eYg~d~elASs~ 476 (497)
++++..+ . |.|.+.++-+.--+.+.+.....
T Consensus 359 ~~~~~~~~ig~iTPPvgl~lfva~~ia~~~~~~i~~~ 395 (416)
T PF06808_consen 359 VFMFYNAEIGLITPPVGLNLFVAAGIAGVPMEKIFRG 395 (416)
T ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHhCCCHHHHHHH
Confidence 8777654 3 66888888777666555544443
No 106
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=22.77 E-value=4.2e+02 Score=25.87 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHHHHhhhcCCCC-CcHHHHH---HHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHH
Q 010956 351 NPNTYSSLIGLVWSLVSFRWNVQ-MPAIVAK---SISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTG 426 (497)
Q Consensus 351 NP~IiAiILGLIlsLl~fr~gI~-LP~~I~~---sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~ 426 (497)
||..-|...|+.+.+.+. ++ +|-++.. ..-.++-..+-++|+++|...+... ..-++-..+|+++.
T Consensus 130 ~p~~~al~~~~sf~lg~l---iPllp~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~~-------~~~~~~~~l~~~~~ 199 (213)
T PF01988_consen 130 SPWKAALATFLSFILGGL---IPLLPYFFLPSVSEAFIASIAVTILALFILGYFKARIS-------GQSWWRSGLEMLLI 199 (213)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCcHHHHHHHHHHH
Confidence 566555555544444321 11 2333332 3344556677788888898876521 12233455667777
Q ss_pred HHHHHHHHHHhC
Q 010956 427 PAVMAAASIAVG 438 (497)
Q Consensus 427 PLLal~l~~lLg 438 (497)
=+++.++.+++|
T Consensus 200 G~~aa~~~~~iG 211 (213)
T PF01988_consen 200 GLIAAAVTYLIG 211 (213)
T ss_pred HHHHHHHHHHHh
Confidence 677766666654
No 107
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=22.37 E-value=1.9e+02 Score=23.38 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=14.3
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHH
Q 010956 461 VFAKEYNVHPDILSTGVIFGMLIA 484 (497)
Q Consensus 461 VfA~eYg~d~elASs~V~~STLLS 484 (497)
=+|+.+|.|+...--+.++.++++
T Consensus 19 GlA~~~gid~~~vRl~~v~l~~~~ 42 (61)
T PF04024_consen 19 GLAEYFGIDPTLVRLIFVVLTFFT 42 (61)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHH
Confidence 356777777666655555555544
No 108
>PRK12674 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.35 E-value=2.9e+02 Score=24.23 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010956 357 SLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIA 436 (497)
Q Consensus 357 iILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~l 436 (497)
+++|.++.+.+---=+++|++..+.=..=-..+.++.++.+|..+.... ....-+.+...++=++..|+....+...
T Consensus 11 l~~G~~f~~~gaiGllR~pD~y~RlHa~tk~~tlG~~lil~g~~l~~~~---~~~~~k~ll~~~~~~lt~pv~sh~iara 87 (99)
T PRK12674 11 LLLGAFFALVGAIGLVRLPDVYTRLHAATKATTLGLGLVLLASALYFAG---GGNSLKALLIILFLFLTAPVAAHLLARA 87 (99)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHhhhcchhhHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544211024788887776444445667778888888775421 1223355666677777888877776643
No 109
>TIGR02602 8TM_EpsH eight transmembrane protein EpsH (proposed exosortase). Members of this family are integral membrane proteins with eight predicted transmembrane helices in common. Some members of this family have long trailing sequences past the region described by this model. This model does not include the region of the first predicted transmembrane region. The best characterized member is EpsH of Methylobacillus sp. 12S, where it is part of a locus associated with biosynthesis of the exopolysaccharide methanolan.
Probab=22.26 E-value=1.7e+02 Score=29.55 Aligned_cols=109 Identities=16% Similarity=0.169 Sum_probs=64.1
Q ss_pred chhHHHHHHHHHHHHhhhcC-------------CCCCc---HHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhh---cc
Q 010956 351 NPNTYSSLIGLVWSLVSFRW-------------NVQMP---AIVAKSISILSDAGLGMAMFSLGLFMALQPRIIA---CG 411 (497)
Q Consensus 351 NP~IiAiILGLIlsLl~fr~-------------gI~LP---~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~---~~ 411 (497)
+--++.+++|+++.+.|.+. -+++| +.+...++.+..-.+-..+=..|.-.......+. ..
T Consensus 66 ~~sl~~~l~g~~~~~~G~~~~r~~~fpl~~L~f~~P~p~l~~~l~~~Lq~~ta~~a~~~L~~~Gipv~~~G~~I~l~~~~ 145 (241)
T TIGR02602 66 SLSLVALLAGSVLALFGFRAFRLLLFPLLLLLFAIPPPGYYAILTIPLQHLTAFAAVGLLDATGIPVYVEGNVIHLPSGT 145 (241)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHCCcchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeEEEECCEE
Confidence 34456677787777776531 35677 4455557777777777777777776655321111 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHH
Q 010956 412 NSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVP 459 (497)
Q Consensus 412 ~k~il~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s 459 (497)
....-.+..+|.++.=+....+...+-......+++++..+.|.++..
T Consensus 146 ~~V~~aCSGlr~l~~~~~l~~l~a~~~~~~~~~r~~l~~~av~iai~~ 193 (241)
T TIGR02602 146 LEVVEACSGLRSLFTSLALGTLFAYLNLRSLWRRAIFLSVAILIAVAA 193 (241)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Confidence 223344667887555443333333334555667788888889988643
No 110
>PRK12670 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.15 E-value=2.5e+02 Score=24.79 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010956 357 SLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASI 435 (497)
Q Consensus 357 iILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~ 435 (497)
+++|.++.+.+---=+++|++..+.=..=-..+.++.++.+|..+..... ....+.+...++=++..|+....+..
T Consensus 10 l~~G~~f~l~g~iGllR~pD~y~RlHA~tk~~TlG~~lil~g~~l~~~~~---~~~~k~lli~~f~~lT~Pvaah~iar 85 (99)
T PRK12670 10 LGLGIFLIVISVIGVIRFPDFYTRLHAAGITDSLGAALILIGLAMQCGFS---VFTVKVLLLICLLWITSTTASYALAR 85 (99)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHhhccccchhhhHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566555543110247888877664433445667777888876643211 01123344444447777777766654
No 111
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=21.98 E-value=1.7e+02 Score=24.73 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=16.9
Q ss_pred HHHHHhCCChhhHHHHHHHHHHHH
Q 010956 461 VFAKEYNVHPDILSTGVIFGMLIA 484 (497)
Q Consensus 461 VfA~eYg~d~elASs~V~~STLLS 484 (497)
=+|+.||.|+.+.--..++.+++.
T Consensus 20 Gla~yf~id~tlVRll~vl~~~~~ 43 (70)
T COG1983 20 GLAEYFGIDPTLVRLLFVLLTLFG 43 (70)
T ss_pred hHHHHhCCChHHHHHHHHHHHHHh
Confidence 357777888777777776666664
No 112
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=21.75 E-value=6.6e+02 Score=26.57 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHHHHhHHHHHHH--HHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHH--HHHhCCchHHHHHH
Q 010956 372 VQMPAIVAKSISILSDAGLGMAMF--SLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAA--SIAVGLRGVLLHVA 447 (497)
Q Consensus 372 I~LP~~I~~sL~iLG~AatPLALf--~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l--~~lLgLd~~ll~Va 447 (497)
..+.+.-.+++.++-.++.-...+ -+|+.++..++ ...+..-++==+=.+|..+|++ ..+||+-....-++
T Consensus 88 ~GlW~~tM~TLaLVl~a~~isivIGiPlGI~~ar~~~-----~~~i~~PiLDlMQTmP~FVYLIPav~lFGlG~VPg~iA 162 (290)
T COG4176 88 LGLWDQTMQTLALVLTATLISIVIGIPLGIWAARSPR-----VYRIVRPILDLMQTMPTFVYLIPAVMLFGLGNVPGLIA 162 (290)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHcchHHHHHhccHH-----HHHHHhHHHHHHhccchHHHHHHHHHHcCCCCCceeee
Confidence 344555555555554333322221 24555554321 1222222222233566666665 45688888888888
Q ss_pred HHhhccchhhHHHHHH
Q 010956 448 IVQAALPQGIVPFVFA 463 (497)
Q Consensus 448 IL~AAmP~Ai~s~VfA 463 (497)
.+..|+|+.+=-..+.
T Consensus 163 tvIfA~PP~IRlT~LG 178 (290)
T COG4176 163 TVIFAMPPMIRLTNLG 178 (290)
T ss_pred eeeeecCchHHHhhcc
Confidence 9999999998766654
No 113
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=20.56 E-value=3.7e+02 Score=27.19 Aligned_cols=51 Identities=22% Similarity=0.126 Sum_probs=31.3
Q ss_pred HHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010956 385 LSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASIAV 437 (497)
Q Consensus 385 LG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~lL 437 (497)
++-..+.++||.+|+..+...+. ..++.-..-..+|+++.=+++.++.+++
T Consensus 187 ~si~l~~~aL~ilG~~~s~~s~~--~~~~~~~~~s~lrml~~G~~aa~vty~l 237 (241)
T cd02435 187 LSVIVTLVALFVFGYVKTWFTGG--WGGAGGGVWGAVQMLVVGGLAAGAAWGL 237 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999988752110 1112224457788888877777776554
No 114
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.50 E-value=4.5e+02 Score=23.57 Aligned_cols=77 Identities=13% Similarity=0.002 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010956 357 SLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASI 435 (497)
Q Consensus 357 iILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~ 435 (497)
+++|.++.+++---=+++|++..+.=.-=-..+.++.++.+|..+..... .....+.+...++=++..|+....+..
T Consensus 7 ll~G~~f~l~g~iGllR~PD~ytRlHAatk~~TlG~~lil~g~~l~~~~~--~~~~~k~lli~~f~~lt~Pvaah~iar 83 (104)
T PRK12675 7 LLFGYSIMFFGALGLLRFPDVYTRLHAATKCDTGGAMGIILALALASDAS--LLIKLKFLVLAFLIAMINPMVSHAIAR 83 (104)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhhhhHHHHHHHHHHHhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44565555543110247898877765444556777888888887754211 011224455555556667776666654
No 115
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.41 E-value=1.5e+03 Score=27.49 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhhhHhhhhcCCCCCcceEEEEE
Q 010956 39 TLMLFMFEYRGARLLISEQFPDTAGSIVSIHV 70 (497)
Q Consensus 39 TLlLflfE~r~ak~li~~qfp~~a~si~s~~v 70 (497)
.++|+++=+-+...|=.|.||+-.--.+.+.+
T Consensus 20 ~~~l~~~G~~~~~~lp~~~~P~~~~~~i~V~~ 51 (1051)
T TIGR00914 20 TLVMAILGIWSYNRLPIDAVPDITNVQVQINT 51 (1051)
T ss_pred HHHHHHHHHHHHhhCCcccCCCCCCcEEEEEE
Confidence 34555566667778888999986555555554
No 116
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.37 E-value=3.4e+02 Score=25.04 Aligned_cols=78 Identities=9% Similarity=0.005 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 010956 357 SLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIAAFSMAVRFLTGPAVMAAASI 435 (497)
Q Consensus 357 iILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~k~i~~~~k~il~~~lvRLLV~PLLal~l~~ 435 (497)
+++|.++.+++---=+++|++..+.=.-=-..+.++.++.+|..+...... .....+.+...++=++..|+.+.++..
T Consensus 19 ll~G~~f~l~gaiGllR~PD~ytRlHAatKa~TlG~~liL~g~~l~~~~~~-~~~~~k~lli~~Fl~lTaPvaaH~iaR 96 (120)
T PRK12671 19 LVLGAGLTLIGTIGLVRLKSFYERLHAPTLGTSWGAGGILIASILYFSVLQ-SRPVLHEVLIGVFVVVTTPVTLMLLSR 96 (120)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHhhcchhhhhhhHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554421102478888776544444556777888888776542110 011224566666777778877777654
No 117
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=20.36 E-value=1.2e+03 Score=25.95 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=27.0
Q ss_pred HHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHH
Q 010956 444 LHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGML 482 (497)
Q Consensus 444 l~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STL 482 (497)
.-.+.+..|.=.|+...++.+++|.||..+|+ .+++|+
T Consensus 393 al~~~~~~A~l~G~~iP~ll~kl~~DPAvaS~-p~iTTl 430 (451)
T COG2239 393 ALLLNILFAALVGVLIPILLKKLGLDPAVASG-PLITTL 430 (451)
T ss_pred HHHHHHHHHHHhhchHHHHHHHcCCCchhhcc-chHHhh
Confidence 44444555566778888889999999997654 555665
Done!