Query 010956
Match_columns 497
No_of_seqs 316 out of 1193
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:47:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.1 6.6E-10 2.3E-14 112.5 16.3 141 346-494 13-154 (332)
2 2zy9_A Mg2+ transporter MGTE; 77.2 72 0.0025 33.2 16.5 91 391-482 357-453 (473)
3 3zux_A Transporter, ASBTNM; tr 65.2 1.1E+02 0.0038 30.4 14.1 58 416-473 231-289 (332)
4 3rlb_A THIT; S-component, ECF 18.8 1.8E+02 0.0061 27.1 6.0 20 349-368 59-78 (192)
5 2kdc_A Diacylglycerol kinase; 18.6 2.6E+02 0.0088 24.3 6.6 22 470-491 94-115 (121)
6 3if4_A Integron cassette prote 15.7 42 0.0014 29.2 0.7 17 83-99 26-42 (119)
7 3db7_A Putative calcium-regula 10.4 1.7E+02 0.0057 25.2 3.0 41 49-96 16-63 (127)
8 1q5l_A Chaperone protein DNAK; 10.3 2.9E+02 0.0099 23.8 4.5 40 62-101 79-118 (135)
9 3o7q_A L-fucose-proton symport 10.0 6.5E+02 0.022 23.8 7.3 24 342-365 248-271 (438)
10 2op6_A Heat shock 70 kDa prote 9.5 3E+02 0.01 23.8 4.4 38 63-100 63-100 (152)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=99.14 E-value=6.6e-10 Score=112.48 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=112.9
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhHhcccch-hhhhcchhHHHHHHHHHHH
Q 010956 346 RKLIRNPNTYSSLIGLVWSLVSFRWNVQMPAIVAKSISILSDAGLGMAMFSLGLFMALQP-RIIACGNSIAAFSMAVRFL 424 (497)
Q Consensus 346 kkLLrNP~IiAiILGLIlsLl~fr~gI~LP~~I~~sL~iLG~AatPLALf~LGlsLa~~~-k~i~~~~k~il~~~lvRLL 424 (497)
.+.+.++.++.+++++++.++ .|.... .++..-..++++.||..|+.+.... +...++.+......+.+++
T Consensus 13 ~~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v 84 (332)
T 3zux_A 13 SSFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA 84 (332)
T ss_dssp HHHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence 345678888888888888776 232111 1233344678899999999998742 2233556777888999999
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 010956 425 TGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYIL 494 (497)
Q Consensus 425 V~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~eYg~d~elASs~V~~STLLSLPi~lv~~iL 494 (497)
++|++++++..++++++.....+++.+++|++..+.+++..+|+|.+++...+.++|++++.++.++..+
T Consensus 85 i~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l 154 (332)
T 3zux_A 85 IMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLM 154 (332)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999886655554443
No 2
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=77.15 E-value=72 Score=33.18 Aligned_cols=91 Identities=12% Similarity=-0.028 Sum_probs=51.7
Q ss_pred HHHHHHHhHhcccch-h-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHhhccchhhHHHHHHH
Q 010956 391 GMAMFSLGLFMALQP-R-IIACGNSIAAFSMAVRFLTGPAVMAAASIAVGLR----GVLLHVAIVQAALPQGIVPFVFAK 464 (497)
Q Consensus 391 PLALf~LGlsLa~~~-k-~i~~~~k~il~~~lvRLLV~PLLal~l~~lLgLd----~~ll~VaIL~AAmP~Ai~s~VfA~ 464 (497)
-.++++=|+.+.... + ..+.-+|.+..+++.=++++.+++....++++.. -....++.+..|.=.|....++.+
T Consensus 357 ~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~a~~~g~~~p~~~~ 436 (473)
T 2zy9_A 357 SATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPFLLR 436 (473)
T ss_dssp HHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566665421 1 1122345666666666666666665555555511 112233344455666777788899
Q ss_pred HhCCChhhHHHHHHHHHH
Q 010956 465 EYNVHPDILSTGVIFGML 482 (497)
Q Consensus 465 eYg~d~elASs~V~~STL 482 (497)
++|.||..+++-+ +||+
T Consensus 437 ~~~~DPa~~s~p~-itt~ 453 (473)
T 2zy9_A 437 RLGVDPALVSNPL-VATL 453 (473)
T ss_dssp HHTCCGGGSCHHH-HHHH
T ss_pred HcCCCccccccch-HHHH
Confidence 9999999886654 4554
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=65.23 E-value=1.1e+02 Score=30.40 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhccchhhHHHHHHHH-hCCChhhH
Q 010956 416 AFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKE-YNVHPDIL 473 (497)
Q Consensus 416 l~~~lvRLLV~PLLal~l~~lLgLd~~ll~VaIL~AAmP~Ai~s~VfA~e-Yg~d~elA 473 (497)
...+++=.+++-++.+.+...++++.....++.+.+++==...+..+|.. |+.++..+
T Consensus 231 ~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~a 289 (332)
T 3zux_A 231 FAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVA 289 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHH
Confidence 33344444555556666677789998888888887776555555656654 44456444
No 4
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=18.85 E-value=1.8e+02 Score=27.15 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=14.9
Q ss_pred hhchhHHHHHHHHHHHHhhh
Q 010956 349 IRNPNTYSSLIGLVWSLVSF 368 (497)
Q Consensus 349 LrNP~IiAiILGLIlsLl~f 368 (497)
++-=+..++++|+++.++.+
T Consensus 59 ~~~Gp~~G~~~g~i~gll~~ 78 (192)
T 3rlb_A 59 LRRGLTAGLVGGLIWGILSM 78 (192)
T ss_dssp HHHCHHHHHHHHHHHHHHHH
T ss_pred HHHChHHHHHHHHHHHHHHH
Confidence 45566788888888888744
No 5
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=18.62 E-value=2.6e+02 Score=24.33 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 010956 470 PDILSTGVIFGMLIALPITLVY 491 (497)
Q Consensus 470 ~elASs~V~~STLLSLPi~lv~ 491 (497)
.|.+|.+|+++.++++.++.++
T Consensus 94 KD~aaaAVlv~~~~a~~v~~~i 115 (121)
T 2kdc_A 94 KDMGSAAVLIAIIVAVITWCIL 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999988877655443
No 6
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=15.66 E-value=42 Score=29.18 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.3
Q ss_pred cccccccccCCcEEEEE
Q 010956 83 LETDAEIKEDGKLHVTV 99 (497)
Q Consensus 83 l~t~ae~~~dg~~~v~v 99 (497)
+-+.-||+++|+||||-
T Consensus 26 ~ia~IEvd~~Grihv~p 42 (119)
T 3if4_A 26 FVAAIEIDGTGRIHVTP 42 (119)
T ss_dssp EEEEEEECTTSCEEEEE
T ss_pred HHHHeeeccCCcEEEee
Confidence 44567999999999987
No 7
>3db7_A Putative calcium-regulated periplasmic protein; structural genomics, joint center for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1 PDB: 3due_A*
Probab=10.43 E-value=1.7e+02 Score=25.25 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=30.7
Q ss_pred hhhHhhhhcCCCCCcceEEEEECCC-------ccccCCCCccccccccccCCcEE
Q 010956 49 GARLLISEQFPDTAGSIVSIHVDSD-------IMSLDGRQPLETDAEIKEDGKLH 96 (497)
Q Consensus 49 ~ak~li~~qfp~~a~si~s~~vd~d-------v~sl~g~~~l~t~ae~~~dg~~~ 96 (497)
.|+-+|.+.|| .+.|+.++.|.+ |.=.|| +|.|.+.+|...
T Consensus 16 ~a~~fi~~~Fp--~~~i~~ve~~~~~~~~~YeV~~~~G-----~ei~Fd~~G~W~ 63 (127)
T 3db7_A 16 LAQQFIKQHFS--DSKVALAKMESDFLYKSYEVIFTNG-----NKVEFDKKGNWE 63 (127)
T ss_dssp HHHHHHHHHCT--TSCEEEEEEEEETTEEEEEEEETTS-----CEEEECTTSCEE
T ss_pred HHHHHHHHHCC--CCceEEEEEecCCccceEEEEECCC-----cEEEEeCCCCEE
Confidence 68899999999 678999999886 222355 457777888743
No 8
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=10.31 E-value=2.9e+02 Score=23.84 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=26.8
Q ss_pred CcceEEEEECCCccccCCCCccccccccccCCcEEEEEEe
Q 010956 62 AGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRK 101 (497)
Q Consensus 62 a~si~s~~vd~dv~sl~g~~~l~t~ae~~~dg~~~v~vr~ 101 (497)
.-.|-+|+++.---.=.|...++..-+++.||-|+|+++-
T Consensus 79 n~~Lg~f~l~gipp~p~G~~~IeVtf~iD~nGiL~V~a~d 118 (135)
T 1q5l_A 79 NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKD 118 (135)
T ss_dssp SEEEEEEECCCCCSCCSSSCCEEEEEEECTTSEEEEEEEE
T ss_pred CcEEEEEEEeCCCCCCCceeEEEEEEEECCCCEEEEEEEE
Confidence 3456777765321111344458888999999999999974
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=10.00 E-value=6.5e+02 Score=23.77 Aligned_cols=24 Identities=8% Similarity=-0.016 Sum_probs=16.3
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHH
Q 010956 342 IMVWRKLIRNPNTYSSLIGLVWSL 365 (497)
Q Consensus 342 k~vlkkLLrNP~IiAiILGLIlsL 365 (497)
++.+++++++|.++..+++..+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T 3o7q_A 248 SASLSRLARIRHWRWAVLAQFCYV 271 (438)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHhChHHHHHHHHHHHHH
Confidence 345677888988877776655443
No 10
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=9.53 E-value=3e+02 Score=23.84 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=26.3
Q ss_pred cceEEEEECCCccccCCCCccccccccccCCcEEEEEE
Q 010956 63 GSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVR 100 (497)
Q Consensus 63 ~si~s~~vd~dv~sl~g~~~l~t~ae~~~dg~~~v~vr 100 (497)
-.|-+|+++.---.-.|...++..-+++.||-|||+++
T Consensus 63 ~~lg~~~l~gipp~p~G~~~I~V~f~id~nGiL~V~a~ 100 (152)
T 2op6_A 63 HKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAE 100 (152)
T ss_dssp EEEEEEEECCCCCCCTTCSCEEEEEEECTTSCEEEEEE
T ss_pred CEeEEEEEECCCCCCCCCceEEEEEEECCCcEEEEEEE
Confidence 35777777642111234445888889999999999987
Done!