Query 010956
Match_columns 497
No_of_seqs 316 out of 1193
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 17:48:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010956.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010956hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w5fa2 d.79.2.1 (A:216-336) C 29.6 36 0.0026 27.5 5.3 40 44-99 69-108 (121)
2 d1u00a2 b.130.1.1 (A:389-503) 29.3 26 0.0019 28.0 4.4 41 64-104 62-102 (115)
3 d1dkza2 b.130.1.1 (A:389-506) 23.0 36 0.0026 27.3 4.1 43 63-105 64-106 (118)
4 d3elga1 d.98.2.1 (A:20-146) Pu 21.1 31 0.0023 28.0 3.3 45 49-99 15-66 (127)
5 d1rq2a2 d.79.2.1 (A:206-312) C 17.8 70 0.0051 25.1 4.7 30 44-73 64-93 (107)
6 d2vapa2 d.79.2.1 (A:232-354) C 15.9 90 0.0066 24.9 5.1 30 44-73 66-95 (123)
7 d1ofua2 d.79.2.1 (A:209-317) C 15.4 99 0.0072 24.1 5.1 30 44-73 65-94 (109)
8 d1f00i1 b.1.14.1 (I:658-752) I 12.2 62 0.0045 24.8 2.8 32 63-94 1-32 (95)
9 d1d6za4 d.82.1.1 (A:7-90) Copp 10.6 44 0.0032 24.7 1.3 35 64-99 31-66 (84)
10 d1kska3 d.66.1.5 (A:1-59) Pseu 8.8 31 0.0023 24.1 -0.2 34 47-80 15-52 (59)
No 1
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}
Probab=29.60 E-value=36 Score=27.54 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=32.3
Q ss_pred HHHhhhhhHhhhhcCCCCCcceEEEEECCCccccCCCCccccccccccCCcEEEEE
Q 010956 44 MFEYRGARLLISEQFPDTAGSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTV 99 (497)
Q Consensus 44 lfE~r~ak~li~~qfp~~a~si~s~~vd~dv~sl~g~~~l~t~ae~~~dg~~~v~v 99 (497)
|.|+..|--.|.|++.+.|--|--..+|++. .+++++|||
T Consensus 69 l~ei~~~~~~i~~~~~~da~ii~G~~~d~~l----------------~~~~i~Vti 108 (121)
T d1w5fa2 69 MEEVHEAAMIIRQNSSEDADVKFGLIFDDEV----------------PDDEIRVIF 108 (121)
T ss_dssp HHHHHHHHHHHHTTSCTTSEEEEEEEECTTS----------------CTTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeeEECCCC----------------CCCeEEEEE
Confidence 6799999999999998888778888888752 235788887
No 2
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=29.30 E-value=26 Score=28.01 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=30.8
Q ss_pred ceEEEEECCCccccCCCCccccccccccCCcEEEEEEecCC
Q 010956 64 SIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNA 104 (497)
Q Consensus 64 si~s~~vd~dv~sl~g~~~l~t~ae~~~dg~~~v~vr~s~~ 104 (497)
-|-.|+++.--=.-.|..+++..-++++||.|||+++--.+
T Consensus 62 ~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGiL~V~A~d~~t 102 (115)
T d1u00a2 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKST 102 (115)
T ss_dssp EEEEEEECCCCCCSTTCSCEEEEEEECTTCCEEEEEEETTT
T ss_pred EeeEEEEeCcccCccccccEEEEEEccCCceEEEEEEECCC
Confidence 46667776544344677789999999999999999986544
No 3
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=23.02 E-value=36 Score=27.31 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=32.4
Q ss_pred cceEEEEECCCccccCCCCccccccccccCCcEEEEEEecCCC
Q 010956 63 GSIVSIHVDSDIMSLDGRQPLETDAEIKEDGKLHVTVRKSNAS 105 (497)
Q Consensus 63 ~si~s~~vd~dv~sl~g~~~l~t~ae~~~dg~~~v~vr~s~~s 105 (497)
-.|-.|+++..--.--|...++-.-++++||.|||+++--.+.
T Consensus 64 ~~lg~~~i~~ip~~p~G~~~I~Vtf~iD~nGiL~V~a~d~~tg 106 (118)
T d1dkza2 64 KSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 106 (118)
T ss_dssp EEEEEEEEECCCSCCTTCSCEEEEEEECTTCCEEEEEEETTTC
T ss_pred eEEEEEEEcCCccCCCCCcEEEEEEEecCCCeEEEEEEECCCC
Confidence 3577888875544446776688899999999999999765443
No 4
>d3elga1 d.98.2.1 (A:20-146) Putative periplasmic protein BVU2443 {Bacteroides vulgatus [TaxId: 821]}
Probab=21.11 E-value=31 Score=28.00 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=33.8
Q ss_pred hhhHhhhhcCCCCCcceEEEEECCCc-------cccCCCCccccccccccCCcEEEEE
Q 010956 49 GARLLISEQFPDTAGSIVSIHVDSDI-------MSLDGRQPLETDAEIKEDGKLHVTV 99 (497)
Q Consensus 49 ~ak~li~~qfp~~a~si~s~~vd~dv-------~sl~g~~~l~t~ae~~~dg~~~v~v 99 (497)
.||-.|.+.|| .+.|+..+.|.|. |.|+. .+|+|.+.+|..+=+-
T Consensus 15 ~a~~fi~~~Fp--~a~I~~~~~e~~~~~~~~YeV~l~n----g~ei~F~~~G~W~~i~ 66 (127)
T d3elga1 15 AAREMIGKHFS--QTKVAYIKIEKDLFQTTSYDVKLAD----GIELEFNSKGEWLEID 66 (127)
T ss_dssp HHHHHHHHHCT--TSCEEEEEEEECTTCCEEEEEEETT----SCEEEECTTSCEEEEE
T ss_pred HHHHHHHHHCC--CCceEEEEEecCCccccEEEEEecC----CeEEEEcCCCCEEEEe
Confidence 68899999999 5779999998873 23332 2578899999876654
No 5
>d1rq2a2 d.79.2.1 (A:206-312) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.75 E-value=70 Score=25.08 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=25.7
Q ss_pred HHHhhhhhHhhhhcCCCCCcceEEEEECCC
Q 010956 44 MFEYRGARLLISEQFPDTAGSIVSIHVDSD 73 (497)
Q Consensus 44 lfE~r~ak~li~~qfp~~a~si~s~~vd~d 73 (497)
|.|+..+.-.|.+++-+.+--|--..+|.+
T Consensus 64 l~e~~~~~~~i~~~~~~da~ii~G~~~d~~ 93 (107)
T d1rq2a2 64 LFEINEAASLVQDAAHPDANIIFGTVIDDS 93 (107)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEEECGG
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEEEECCC
Confidence 679999999999999878777888888864
No 6
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=15.93 E-value=90 Score=24.91 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=25.2
Q ss_pred HHHhhhhhHhhhhcCCCCCcceEEEEECCC
Q 010956 44 MFEYRGARLLISEQFPDTAGSIVSIHVDSD 73 (497)
Q Consensus 44 lfE~r~ak~li~~qfp~~a~si~s~~vd~d 73 (497)
|.|+..|.-.|.+++.+.+--|--..+|++
T Consensus 66 l~e~~~~~~~i~~~~~~da~ii~G~~~d~~ 95 (123)
T d2vapa2 66 LEEAREVVATVSSRLDPNATIIWGATIDEN 95 (123)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHhcCCCccEEEEEEECCc
Confidence 679999999999999777777888888864
No 7
>d1ofua2 d.79.2.1 (A:209-317) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.44 E-value=99 Score=24.11 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=25.1
Q ss_pred HHHhhhhhHhhhhcCCCCCcceEEEEECCC
Q 010956 44 MFEYRGARLLISEQFPDTAGSIVSIHVDSD 73 (497)
Q Consensus 44 lfE~r~ak~li~~qfp~~a~si~s~~vd~d 73 (497)
|.|+..|.-.|.+++.+.+--|--..+|++
T Consensus 65 l~e~~~~~~~i~~~~~~~a~ii~G~~~d~~ 94 (109)
T d1ofua2 65 LGEYSDVGNIIEQFASEHATVKVGTVIDAD 94 (109)
T ss_dssp HHHHHHHHHHHHHHSCTTSEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHhhccCcEEEEEEEEcCc
Confidence 678888889999999888777888888874
No 8
>d1f00i1 b.1.14.1 (I:658-752) Intimin {Escherichia coli [TaxId: 562]}
Probab=12.21 E-value=62 Score=24.80 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=25.5
Q ss_pred cceEEEEECCCccccCCCCccccccccccCCc
Q 010956 63 GSIVSIHVDSDIMSLDGRQPLETDAEIKEDGK 94 (497)
Q Consensus 63 ~si~s~~vd~dv~sl~g~~~l~t~ae~~~dg~ 94 (497)
|.|.++.+|.+-+--||.+..+-.|-+.|+|.
T Consensus 1 A~i~~l~~~k~~~~AdG~~~~t~tatv~D~gn 32 (95)
T d1f00i1 1 ASITEIKADKTTAVANGQDAITYTVKVMKGDK 32 (95)
T ss_dssp CEEEEEEESCSEEESSSCCCEEEEEEEEETTE
T ss_pred CeEEEEEECCCcEEecCcceEEEEEEEEECCc
Confidence 57899999999888899887776676666665
No 9
>d1d6za4 d.82.1.1 (A:7-90) Copper amine oxidase, domain N {Escherichia coli [TaxId: 562]}
Probab=10.64 E-value=44 Score=24.65 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=27.8
Q ss_pred ceEEEEECCCccccCCCC-ccccccccccCCcEEEEE
Q 010956 64 SIVSIHVDSDIMSLDGRQ-PLETDAEIKEDGKLHVTV 99 (497)
Q Consensus 64 si~s~~vd~dv~sl~g~~-~l~t~ae~~~dg~~~v~v 99 (497)
....++++++...+||+. .|++.+++. ||++.|=+
T Consensus 31 ~~i~l~~gs~~a~vNg~~v~l~~~p~~~-~g~~yVPl 66 (84)
T d1d6za4 31 AYVKVKPGAQTAIVNGQPLALQVPVVMK-DNKAWVSD 66 (84)
T ss_dssp EEEEECTTCSEEEETTEEEECSSCCEEE-TTEEEECT
T ss_pred EEEEEECCCeeeEECCeEEEcCCCCEEE-CCEEEEEH
Confidence 467899999999999975 777777774 68888744
No 10
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.84 E-value=31 Score=24.12 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=17.4
Q ss_pred hhhhhHhhhhcCCCCCcce---EEEEEC-CCccccCCC
Q 010956 47 YRGARLLISEQFPDTAGSI---VSIHVD-SDIMSLDGR 80 (497)
Q Consensus 47 ~r~ak~li~~qfp~~a~si---~s~~vd-~dv~sl~g~ 80 (497)
-|.|+-||.+.-=--.+.+ -+++|+ .|+|++||+
T Consensus 15 R~~a~~lI~~g~V~Vng~~v~~~~~~V~~~d~I~~dg~ 52 (59)
T d1kska3 15 RAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN 52 (59)
T ss_dssp HHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE
T ss_pred HHHHHHHHHcCcEEECCEEeecCCcCcCCCCEEEECCE
Confidence 4788888886532211221 134444 345555554
Done!