BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010960
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 123/461 (26%), Positives = 207/461 (44%), Gaps = 36/461 (7%)
Query: 40 MTVDHLHRFLIEVQKEDK--------ASKEDAQAIIDSLRELKHLNIFQRRGLNLEAFFK 91
MT +HL +F+ + Q++ + A + Q +ID E +N QR L+ E
Sbjct: 236 MTKEHLTKFINQKQRDSRLNSLLFPPARPDQVQGLIDKY-EPSGINA-QRGQLSPEGMVW 293
Query: 92 YLFGDINPPLSPTPVV-HHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGV 150
+L G N L+ ++ HHDMT P++HYFI + HN+YLT Q + S + L G
Sbjct: 294 FLCGPENSVLAQDKLLLHHDMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQVLLSGC 353
Query: 151 RVIELDIWPNSKKDNVDVL-HGGTMTAPVELIKCLRSIKEYAFVASEYPVVITLEDHL-T 208
R +ELD W D ++ HG TMT + + + +I E AF S YP++++ E+H+ +
Sbjct: 354 RCVELDCWKGKPPDEEPIITHGFTMTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDS 413
Query: 209 PDLQAKVAEMVTQTLGEILFTPGSECLKEF--------PSPESLKRRIIISTXXXXXXXX 260
P QAK+AE G++L T E L++F PSPE L+ +I+I
Sbjct: 414 PRQQAKMAEYCRTIFGDMLLT---EPLEKFPLKPGVPLPSPEDLRGKILIKNKKNQFSGP 470
Query: 261 XXXXXXXXNDSQRGKGSADEEAWG---KEVPNLKSLNNSACXXXXXXXXXXXXXXXSDDK 317
+++ + W + + SD+
Sbjct: 471 TSSSKDTGGEAEGSSPPSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEG 530
Query: 318 SQHNEAPEYRKLIA-IHAGKPKGGLKECLKVDPDKVRRL-SLSEQQLENAVGTYGNDIVR 375
+ E Y ++ + ++ +P + ++ + S +E + + + V
Sbjct: 531 TAGLEVTAYEEMSSLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQFVD 590
Query: 376 FTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQGHGRSLWLMHGMFRANGGCGY 435
+ +R + RIYPKG R+DSSNY P + W+ G QMVA N Q + +F NG GY
Sbjct: 591 YNKRQMSRIYPKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQQNMAVFEFNGQSGY 650
Query: 436 VKKPNFLLQTGPHNEVFDP----KVKLPAKKTLKVTVYMGE 472
+ K F+ + ++ F+P ++ + TL +TV G+
Sbjct: 651 LLKHEFMRRP---DKQFNPFSVDRIDVVVATTLSITVISGQ 688
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 5/206 (2%)
Query: 39 TMTVDHLHRFLIEVQKEDKASKEDAQAIIDSLRELKHLNIFQRRGLNLEAFFKYLF-GDI 97
T++V+ L FL Q+E++A A ++I+ + +R + + F YL D
Sbjct: 95 TLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKA--QRQMTKDGFLMYLLSADG 152
Query: 98 NPPLSPTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDI 157
N V+ DM P+SHY + + HN+YL +QL S IRAL KG R +ELD
Sbjct: 153 NAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDC 212
Query: 158 WPNSKKDNVDVLHGGTMTAPVELIKCLRSIKEYAFVASEYPVVITLEDHLTPDLQAKVAE 217
W ++ + + HG T T+ + LR+I++YAF AS YPV+++LE+H + + Q +A
Sbjct: 213 WDGPNQEPI-IYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMAR 271
Query: 218 MVTQTLGEILF-TPGSECLKEFPSPE 242
+ LG IL P PSPE
Sbjct: 272 HLRAILGPILLDQPLDGVTTSLPSPE 297
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 50/87 (57%)
Query: 356 SLSEQQLENAVGTYGNDIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQG 415
S SE + + GN VR L RIYP G R DSSNY+P+ W+ G Q+VA N Q
Sbjct: 390 SFSESRALRLLQESGNGFVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQT 449
Query: 416 HGRSLWLMHGMFRANGGCGYVKKPNFL 442
G + + G F+ NGGCGYV KP FL
Sbjct: 450 PGPEMDVYLGCFQDNGGCGYVLKPAFL 476
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 5/206 (2%)
Query: 39 TMTVDHLHRFLIEVQKEDKASKEDAQAIIDSLRELKHLNIFQRRGLNLEAFFKYLF-GDI 97
T++V+ L FL Q+E++A A ++I+ + +R + + F YL D
Sbjct: 93 TLSVERLVTFLQHQQREEEAGPALALSLIERYEPSETAKA--QRQMTKDGFLMYLLSADG 150
Query: 98 NPPLSPTPVVHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRVIELDI 157
N V+ DM P+SHY + + HN+YL +QL S IRAL KG R +ELD
Sbjct: 151 NAFSLAHRRVYQDMDQPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDC 210
Query: 158 WPNSKKDNVDVLHGGTMTAPVELIKCLRSIKEYAFVASEYPVVITLEDHLTPDLQAKVAE 217
W ++ + + HG T T+ + LR+I++YAF AS YPV+++LE+H + + Q +A
Sbjct: 211 WDGPNQEPI-IYHGYTFTSKILFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMAR 269
Query: 218 MVTQTLGEILF-TPGSECLKEFPSPE 242
+ LG IL P PSPE
Sbjct: 270 HLRAILGPILLDQPLDGVTTSLPSPE 295
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 50/87 (57%)
Query: 356 SLSEQQLENAVGTYGNDIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQG 415
S SE + + GN VR L RIYP G R DSSNY+P+ W+ G Q+VA N Q
Sbjct: 388 SFSESRALRLLQESGNGFVRHNVSCLSRIYPAGWRTDSSNYSPVEMWNGGCQIVALNFQT 447
Query: 416 HGRSLWLMHGMFRANGGCGYVKKPNFL 442
G + + G F+ NGGCGYV KP FL
Sbjct: 448 PGPEMDVYLGCFQDNGGCGYVLKPAFL 474
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 16/186 (8%)
Query: 77 NIFQRRGLNLEAFFKYLFGDINPPLSPTPV-VHHDMTAPVSHYFIYTGHNSYLTGNQLNS 135
+R +++E F +YL G+ N L + + DMT P+S YFI + HN+YLT QL
Sbjct: 285 QFLERDQMSMEGFSRYLGGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAG 344
Query: 136 DCSDVPIIRALQKGVRVIELDIWPNSKKDNVD-VLHGGTMTAPVELIKCLRSIKEYAFVA 194
S +AL G R +ELD+W + + HG TMT V L L +I E AF
Sbjct: 345 TSSVEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKT 404
Query: 195 SEYPVVITLEDHL-TPDLQAKVAEMVTQTLGEIL---------FTPGSECLKEFPSPESL 244
S YPV+++ E+H+ + QAK+AE G+ L PG PSP+ L
Sbjct: 405 SPYPVILSFENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGV----PLPSPQDL 460
Query: 245 KRRIII 250
RI++
Sbjct: 461 MGRILV 466
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 372 DIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQGHGRSLWLMHGMFRANG 431
+ V + ++ L RIYPKG RVDSSNY P + W+ G Q+VA N Q ++ L G+F NG
Sbjct: 636 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNG 695
Query: 432 GCGYVKKPNFLLQTGPHNEVFDP 454
GY+ KP F+ + ++ FDP
Sbjct: 696 RSGYLLKPEFMRRP---DKSFDP 715
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 20/228 (8%)
Query: 40 MTVDHLHRFLIEVQKEDKASK------EDAQAIIDSLRELKHLNIFQRRGLNLEAFFKYL 93
+T++ L F+ + Q++ + ++ +QA + + + +R +++E F +YL
Sbjct: 240 LTLEQLMDFINQKQRDPRLNEVLYPPLRPSQARLLIEKYEPNQQFLERDQMSMEGFSRYL 299
Query: 94 FGDINPPLSPTPV-VHHDMTAPVSHYFIYTGHNSYLTGNQLNSDCSDVPIIRALQKGVRV 152
G+ N L + + DMT P+S YFI + HN+YLT QL S +AL G R
Sbjct: 300 GGEENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQALLWGCRC 359
Query: 153 IELDIWPNS-KKDNVDVLHGGTMTAPVELIKCLRSIKEYAFVASEYPVVITLEDHL-TPD 210
+ELD+W ++ + HG TMT V L L +I E AF S YPV+++ E+H+ +
Sbjct: 360 VELDVWKGRPPEEEPFITHGFTMTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAK 419
Query: 211 LQAKVAEMVTQTLGEILFTPGSECLKEF--------PSPESLKRRIII 250
QAK+AE G+ L E L ++ PSP+ L RI++
Sbjct: 420 QQAKMAEYCRSIFGDALLI---EPLDKYPLAPGVPLPSPQDLMGRILV 464
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 372 DIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQGHGRSLWLMHGMFRANG 431
+ V + ++ L RIYPKG RVDSSNY P + W+ G Q+VA N Q ++ L G+F NG
Sbjct: 634 EFVEYNKQQLSRIYPKGTRVDSSNYMPQLFWNVGCQLVALNFQTLDVAMQLNAGVFEYNG 693
Query: 432 GCGYVKKPNFLLQTGPHNEVFDP 454
GY+ KP F+ + ++ FDP
Sbjct: 694 RSGYLLKPEFMRRP---DKSFDP 713
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 32/247 (12%)
Query: 27 VKSMFDQYSEN-GTMTVDHLHRFLIEVQKEDKASKE------DAQ--AIIDSLRELKHLN 77
++ +F + S+N G +T FL ++Q+ K DAQ A+I+ +
Sbjct: 231 IEGIFKELSKNKGNITTVMFRDFLNDMQRHPSLHKTLFPLYTDAQCEALINDYESAVNKK 290
Query: 78 IFQRRGLNLEAFFKYLFGDINPPLSPTPVVHHDMTA----PVSHYFIYTGHNSYLTGNQL 133
++ L E +L + N + TP+ D+ A ++ Y+I + HN+YLTG+QL
Sbjct: 291 GKKKGQLTKEGLLYFLMCEEN---NLTPMHRLDLGANMKLTLAAYYINSSHNTYLTGHQL 347
Query: 134 NSDCSDVPIIR-ALQKGVRVIELDIWPNSKKDNVDVLHGGTMTAPVELIKCLRSIKEYAF 192
S V I R L G R +ELD W + + + HG TM V + +I E AF
Sbjct: 348 TGK-SSVEIYRQVLLTGCRCLELDCWDGKDGEPI-ITHGFTMCTEVLFKDVVYAIAESAF 405
Query: 193 VASEYPVVITLEDHLTPDLQAKVAEMVTQTLGEIL---------FTPGSECLKEFPSPES 243
S+YPV+++ E+H + Q +A+ + GE+L PG P+P
Sbjct: 406 KVSDYPVILSFENHCSVAQQKLLAQYCNEAFGELLLDKPIDGHPLKPGV----PLPTPYD 461
Query: 244 LKRRIII 250
L+++I+I
Sbjct: 462 LRKKILI 468
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 356 SLSEQQLENAVGTYGNDIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQG 415
S+ E Q N + D V + ++ + RIYPKG RVDSSNY P I W+ G Q+VA N Q
Sbjct: 543 SMVETQALNKLKDNPEDFVDYNKKQITRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQC 602
Query: 416 HGRSLWLMHGMFRANGGCGYVKKPNFLLQTGPHNEVFDP 454
++ + G+F NG GY+ KP F+ + ++ FDP
Sbjct: 603 FDIAMCVNLGVFEYNGCSGYLLKPEFMRKL---DKRFDP 638
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 19/216 (8%)
Query: 27 VKSMFDQYSEN-GTMTVDHLHRFLIEVQKEDKASKE------DAQ--AIIDSLRELKHLN 77
++ +F + S+N G +T FL ++Q+ K D+Q A+I+ +
Sbjct: 231 IEGIFKELSQNKGNITTVMFRDFLNDMQRHPSLHKTLFPLYTDSQCDALINEYESAVNKK 290
Query: 78 IFQRRGLNLEAFFKYLFGDINPPLSPTPVVHHDMTA----PVSHYFIYTGHNSYLTGNQL 133
++ L E +L + N + TP+ D+ A ++ Y+I + HN+YLTG+QL
Sbjct: 291 GKKKGQLTKEGLLYFLMCEEN---NLTPMHRLDLGANMKLSLAAYYINSSHNTYLTGHQL 347
Query: 134 NSDCSDVPIIR-ALQKGVRVIELDIWPNSKKDNVDVLHGGTMTAPVELIKCLRSIKEYAF 192
S V I R L G R +ELD W + + + HG TM V+ + +I E AF
Sbjct: 348 TGK-SSVEIYRQVLLTGCRCLELDCWDGKDGEPI-ITHGFTMCTEVQFKDVVHAIAECAF 405
Query: 193 VASEYPVVITLEDHLTPDLQAKVAEMVTQTLGEILF 228
SEYPV+++ E+H + Q +A+ + GE+L
Sbjct: 406 KVSEYPVILSFENHCSVPQQKLLAQYCHEAFGELLL 441
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 356 SLSEQQLENAVGTYGNDIVRFTQRNLLRIYPKGIRVDSSNYNPLIGWSHGAQMVAFNMQG 415
S+ E Q N + D V + ++ L RIYPKG RVDSSNY P I W+ G Q+VA N Q
Sbjct: 543 SMVETQALNKLKDNPEDFVDYNKKQLTRIYPKGTRVDSSNYVPQIYWNAGCQLVALNFQC 602
Query: 416 HGRSLWLMHGMFRANGGCGYVKKPNFLLQTGPHNEVFDP 454
++ + G+F NG GY+ KP F+ + ++ FDP
Sbjct: 603 FDVAMCVNLGVFEYNGCSGYLLKPEFMRKL---DKRFDP 638
>pdb|4FWW|A Chain A, Crystal Structure Of The Sema-Psi Extracellular Domains Of
Human Ron Receptor Tyrosine Kinase
Length = 527
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 133 LNSDCSDVPIIRALQKGVRVIELDIWPNSKKDNVDVLHGGTMTAPVELIKCLRSIKEYAF 192
++S S V + L V+V L + ++ DNV V H GTM + ++ +RS+ +
Sbjct: 388 VSSSFSRVDLFNGLLGPVQVTALYV---TRLDNVTVAHMGTMDGRILQVELVRSLNYLLY 444
Query: 193 VA------SEYPV---VITLEDHLTPDLQAKVAEMVTQTLGEILFTPGSECLKEF 238
V+ S PV V L DHL +V ++ Q G F CL+ +
Sbjct: 445 VSNFSLGDSGQPVQRDVSRLGDHLLFASGDQVFQVPIQGPGCRHFLTCGRCLRAW 499
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,870,405
Number of Sequences: 62578
Number of extensions: 612314
Number of successful extensions: 1442
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 15
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)